1554 215 74 51 chr9 662 1173 -117861454 - L1MD3 LINE L1 0 7995 7473 * 1668 202 18 9 chr9 1169 1496 -117861131 - L1MD3 LINE L1 -958 7037 6708 1853 98 0 0 chr9 1808 2072 -117860555 - AluSc SINE Alu 0 309 46 2226 112 3 16 chr9 3277 3589 -117859038 + AluSx SINE Alu 1 308 -4 217 250 0 0 chr9 3831 3879 -117858748 - MIR SINE MIR -2 260 213 1858 153 109 52 chr9 3881 4156 -117858471 + MSTA LTR MaLR 1 308 -120 1994 130 14 0 chr9 4156 4440 -117858187 + AluSx SINE Alu 1 288 -24 1858 153 109 52 chr9 4440 4569 -117858058 + MSTA LTR MaLR 308 428 0 2275 105 3 0 chr9 4629 4925 -117857702 + AluSg SINE Alu 2 298 -12 233 355 64 41 chr9 4998 5170 -117857457 - L2 LINE L2 -183 3089 2914 323 121 17 0 chr9 5748 5806 -117856821 + (CA)n Simple_repeat Simple_repeat 2 60 0 39 38 0 0 chr9 5806 5859 -117856768 + AT_rich Low_complexity Low_complexity 1 53 0 2217 108 3 0 chr9 5876 6164 -117856463 + AluSq SINE Alu 5 293 -20 226 222 0 0 chr9 6193 6238 -117856389 + (TATG)n Simple_repeat Simple_repeat 4 48 0 405 269 56 0 chr9 6374 6482 -117856145 - L2 LINE L2 -1 3312 3199 2189 124 3 0 chr9 6790 7089 -117855538 + AluSx SINE Alu 6 305 -7 1809 171 47 22 chr9 7486 7848 -117854779 + L1MB2 LINE L1 5801 6171 0 257 315 100 30 chr9 7863 8008 -117854619 + L1MC/D LINE L1 5614 5778 -2030 1098 219 8 60 chr9 8008 8259 -117854368 + MER8 DNA MER2_type 1 238 -1 257 315 100 30 chr9 8259 8313 -117854314 + L1MC/D LINE L1 5778 5827 -1981 2768 213 30 14 chr9 8539 8561 -117854066 + L1MB5 LINE L1 4316 4336 -1810 2257 112 3 0 chr9 8561 8856 -117853771 + AluSp SINE Alu 2 297 -16 2768 213 30 14 chr9 8856 8945 -117853682 + L1MB5 LINE L1 4336 4422 -1724 2259 113 7 3 chr9 8945 9254 -117853373 + AluSx SINE Alu 1 310 -2 2768 213 30 14 chr9 9254 9908 -117852719 + L1MB5 LINE L1 4422 5054 -1092 2267 108 3 13 chr9 9910 10225 -117852402 + AluSx SINE Alu 1 312 0 4024 179 72 11 chr9 10236 11142 -117851485 + L1MB5 LINE L1 5215 6173 -1 2496 131 6 0 chr9 11615 11974 -117850653 + MER46B DNA MER2_type 1 236 0 1971 162 13 0 chr9 12051 12359 -117850268 + AluJo SINE Alu 1 312 0 761 188 0 0 chr9 12623 12740 -117849887 - FLAM_A SINE Alu -16 117 1 30 0 0 0 chr9 13101 13131 -117849496 + AT_rich Low_complexity Low_complexity 1 30 0 310 294 34 62 chr9 15065 15242 -117847385 + L1ME LINE L1 4887 5058 -1088 2618 145 88 47 chr9 15300 15789 -117846838 - LTR22 LTR ERVK 0 509 1 299 317 14 41 chr9 15798 15913 -117846714 - L2 LINE L2 -52 3261 3149 1977 121 31 7 chr9 15913 16202 -117846425 + AluSq SINE Alu 1 296 -17 299 317 14 41 chr9 16202 16231 -117846396 - L2 LINE L2 -164 3149 3121 370 327 96 6 chr9 16260 16531 -117846096 - L2 LINE L2 -309 2963 2653 22 35 0 0 chr9 16600 16629 -117845998 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr9 16672 16714 -117845913 + AT_rich Low_complexity Low_complexity 1 42 0 349 222 178 10 chr9 16721 16977 -117845650 + L1ME LINE L1 5281 5594 -527 280 138 92 62 chr9 17651 17716 -117844911 - MIR3 SINE MIR -17 191 125 485 257 75 70 chr9 18671 18912 -117843715 + MIR SINE MIR 18 259 -3 300 213 516 7 chr9 19137 19292 -117843335 - MIR SINE MIR -8 254 21 894 241 63 69 chr9 19453 19801 -117842826 + L1ME4a LINE L1 5490 5835 -286 535 295 106 10 chr9 19852 19927 -117842700 + MIR SINE MIR 26 92 -170 2284 122 0 0 chr9 19927 20238 -117842389 - AluSx SINE Alu -1 311 1 535 295 106 10 chr9 20238 20369 -117842258 + MIR SINE MIR 92 252 -10 250 288 182 25 chr9 21785 21983 -117840644 + MIR SINE MIR 31 259 -3 269 315 178 36 chr9 22870 23146 -117839481 - L2 LINE L2 -1229 2085 1771 21 0 0 0 chr9 23559 23580 -117839047 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr9 24094 24137 -117838490 + AT_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr9 24323 24351 -117838276 + AT_rich Low_complexity Low_complexity 1 28 0 4611 115 134 31 chr9 26694 28058 -117834569 + pTR5 LTR ERV1 726 2606 0 207 0 0 0 chr9 29711 29734 -117832893 + (CA)n Simple_repeat Simple_repeat 2 24 0 1055 208 33 0 chr9 30257 30440 -117832187 - MER5A DNA MER1_type 0 189 1 4988 66 194 27 chr9 30492 31200 -117831427 + LTR12 LTR ERV1 1 826 0 866 213 38 16 chr9 31833 32016 -117830611 - MER5A DNA MER1_type -1 188 2 2002 153 0 3 chr9 32030 32324 -117830303 - AluSx SINE Alu -19 293 1 1897 154 3 10 chr9 32385 32677 -117829950 - AluJb SINE Alu -22 290 1 183 237 26 92 chr9 32720 32796 -117829831 + MIR SINE MIR 56 126 -136 2237 108 10 3 chr9 33183 33488 -117829139 - AluSx SINE Alu -5 307 1 460 36 0 0 chr9 34552 34608 -117828019 + AluY SINE Alu 3 58 -252 7479 138 40 6 chr9 34714 36021 -117826606 - L1PBa LINE L1 -4274 2589 1093 2550 158 22 9 chr9 36198 36647 -117825980 + L1MB1 LINE L1 5714 6168 0 1250 140 10 24 chr9 36659 36866 -117825761 - Tigger3(Golem) DNA MER2_type -15 3014 2811 331 153 333 0 chr9 36864 36936 -117825691 - Tigger3(Golem) DNA MER2_type -2932 97 2 * 1844 175 0 7 chr9 37251 37542 -117825085 - AluJb SINE Alu -23 289 1 367 297 72 0 chr9 38882 38993 -117823634 + L1ME3 LINE L1 5965 6083 -79 2031 105 28 65 chr9 39050 39373 -117823254 + AluSx SINE Alu 1 311 -1 1006 225 114 76 chr9 39488 39990 -117822637 + MER39 LTR ERV1 1 707 0 187 227 0 23 chr9 40095 40139 -117822488 - MER5A DNA MER1_type -21 168 126 398 250 30 54 chr9 40281 40449 -117822178 + L1MC5 LINE L1 7773 7936 -25 194 270 139 70 chr9 40449 40564 -117822063 - MER5B DNA MER1_type -53 125 3 188 311 115 0 chr9 40569 40630 -117821997 - L2 LINE L2 -1 3271 3204 1623 163 20 24 chr9 43566 43860 -117818767 + AluJo SINE Alu 2 294 -18 1682 195 7 3 chr9 43888 44195 -117818432 + AluJb SINE Alu 1 308 -4 193 222 143 0 chr9 45075 45138 -117817489 + MIR SINE MIR 78 149 -113 188 67 33 0 chr9 45186 45216 -117817411 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1843 168 10 16 chr9 45425 45735 -117816892 + AluJo SINE Alu 1 308 -4 2917 146 17 2 chr9 45879 46346 -117816281 + L1MB1 LINE L1 5695 6168 0 43739 31 21 6 chr9 46457 52521 -117810106 + L1PA3 LINE L1 1 6155 0 25 0 0 0 chr9 52539 52564 -117810063 + AT_rich Low_complexity Low_complexity 1 25 0 2259 85 10 19 chr9 53702 54009 -117808618 + AluSc SINE Alu 1 304 -5 1679 126 72 4 chr9 54573 54836 -117807791 + AluSx SINE Alu 5 285 -27 257 27 54 0 chr9 54858 54895 -117807732 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr9 55387 55412 -117807215 + (A)n Simple_repeat Simple_repeat 1 25 0 185 331 145 8 chr9 56019 56143 -117806484 + L2 LINE L2 2718 2858 -456 222 297 55 78 chr9 56209 56337 -117806290 + L2 LINE L2 2948 3072 -200 193 270 206 40 chr9 56424 56550 -117806077 + L2 LINE L2 3122 3268 -4 2620 55 0 0 chr9 56925 57234 -117805393 - AluY SINE Alu -2 309 1 225 0 0 0 chr9 58246 58271 -117804356 + (A)n Simple_repeat Simple_repeat 1 25 0 587 246 181 0 chr9 60203 60418 -117802209 - MIR SINE MIR 0 262 9 21 0 0 0 chr9 61088 61109 -117801518 + AT_rich Low_complexity Low_complexity 1 21 0 801 175 0 0 chr9 62114 62240 -117800387 + FLAM_A SINE Alu 1 126 -7 1751 78 48 117 chr9 62630 62939 -117799688 + AluSx SINE Alu 1 288 -24 38 22 0 0 chr9 62939 62984 -117799643 + AT_rich Low_complexity Low_complexity 1 45 0 290 164 91 0 chr9 64989 65044 -117797583 + L2 LINE L2 3250 3309 -4 27 0 0 0 chr9 65908 65935 -117796692 + AT_rich Low_complexity Low_complexity 1 27 0 1377 113 120 21 chr9 66098 66381 -117796246 + L1MA9 LINE L1 5997 6307 -5 202 151 0 75 chr9 66470 66523 -117796104 + GA-rich Low_complexity Low_complexity 4 52 0 2355 96 3 0 chr9 67995 68296 -117794331 + AluSx SINE Alu 1 302 -10 259 86 0 0 chr9 68607 68642 -117793985 - U2 snRNA snRNA -153 35 1 809 56 47 0 chr9 68715 68822 -117793805 - L1PA10 LINE L1 -3 6165 6054 31 44 0 0 chr9 69507 69552 -117793075 + AT_rich Low_complexity Low_complexity 1 45 0 2203 115 0 28 chr9 70443 70764 -117791863 + AluSx SINE Alu 1 312 0 1233 168 28 5 chr9 72333 72547 -117790080 + MER20 DNA MER1_type 1 219 0 214 158 0 0 chr9 72581 72619 -117790008 + A-rich Low_complexity Low_complexity 5 42 0 742 251 143 72 chr9 73648 74173 -117788454 + HAL1b LINE L1 77 638 -710 * 745 234 104 57 chr9 74172 74488 -117788139 + HAL1b LINE L1 439 769 -579 12781 95 39 8 chr9 74491 75050 -117787577 + Tigger1 DNA MER2_type 388 928 -1490 2052 103 4 4 chr9 75050 75360 -117787267 - AluSg SINE Alu 0 310 1 12781 95 39 8 chr9 75360 76663 -117785964 + Tigger1 DNA MER2_type 928 2309 -109 1028 134 79 12 chr9 76663 76827 -117785800 - FRAM SINE Alu -4 172 1 691 183 0 0 chr9 76831 76946 -117785681 + Tigger1 DNA MER2_type 2304 2418 0 705 167 30 8 chr9 76950 77082 -117785545 - MER5A DNA MER1_type -23 166 32 456 123 0 0 chr9 77144 77217 -117785410 + (TG)n Simple_repeat Simple_repeat 2 74 0 1929 120 4 4 chr9 77219 77494 -117785133 - AluSx SINE Alu -37 275 1 1451 145 9 0 chr9 78346 78574 -117784053 - MER2 DNA MER2_type -115 230 1 299 189 68 14 chr9 79597 79671 -117782956 - L2 LINE L2 -4 3309 3232 2009 82 0 0 chr9 80714 80970 -117781657 + AluY SINE Alu 41 296 -15 2253 107 0 3 chr9 81906 82214 -117780413 + AluSc SINE Alu 2 308 -1 26 64 0 0 chr9 82594 82641 -117779986 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 82780 82801 -117779826 + AT_rich Low_complexity Low_complexity 1 21 0 328 183 112 52 chr9 83162 83332 -117779295 - L1ME LINE L1 -356 5806 5638 233 288 137 0 chr9 83695 83768 -117778859 - L2 LINE L2 -32 3281 3199 390 306 133 43 chr9 83988 84243 -117778384 - L2 LINE L2 -475 2839 2562 212 325 12 12 chr9 85278 85358 -117777269 - MIR SINE MIR -58 150 71 926 272 99 10 chr9 86777 87210 -117775417 - L1ME3A LINE L1 -337 5833 5357 190 106 21 106 chr9 87242 87289 -117775338 - MIR SINE MIR -136 126 84 1258 171 0 18 chr9 87938 88155 -117774472 - AluJo SINE Alu -18 294 82 2104 158 53 44 chr9 88270 88725 -117773902 + L1MB8 LINE L1 5715 6173 -5 2227 117 3 0 chr9 88984 89291 -117773336 - AluSg SINE Alu -2 308 1 743 274 58 14 chr9 89516 89724 -117772903 - MIR SINE MIR -31 231 15 585 189 25 16 chr9 89727 89849 -117772778 - MER58 DNA MER1_type -4 2416 2294 830 196 111 69 chr9 89870 90137 -117772490 + LTR54B LTR ERV1 1 288 -210 1891 143 4 0 chr9 90137 90403 -117772224 + AluSx SINE Alu 1 267 -45 830 196 111 69 chr9 90403 90497 -117772130 + LTR54B LTR ERV1 288 377 -121 433 172 0 133 chr9 90497 90625 -117772002 + MER57A-int LTR ERV1 7425 7535 -2 1000 153 55 92 chr9 90626 90937 -117771690 + MER57A LTR ERV1 1 403 0 378 213 71 50 chr9 90937 91041 -117771586 - MER58 DNA MER1_type -2276 144 38 24 0 0 0 chr9 91722 91746 -117770881 + AT_rich Low_complexity Low_complexity 1 24 0 820 206 28 22 chr9 92613 92793 -117769834 - MLT1A1 LTR MaLR 0 365 185 1700 188 0 0 chr9 92932 93214 -117769413 + AluJo SINE Alu 1 282 -30 287 161 0 16 chr9 93222 93284 -117769343 + (TA)n Simple_repeat Simple_repeat 1 61 0 317 271 48 91 chr9 93631 93750 -117768877 - L1MC4a LINE L1 -1873 5935 5827 2256 119 0 0 chr9 93750 94053 -117768574 - AluSq SINE Alu -10 303 1 317 271 48 91 chr9 94053 94143 -117768484 - L1MC4a LINE L1 -1981 5827 5735 22 35 0 0 chr9 94332 94361 -117768266 + AT_rich Low_complexity Low_complexity 1 29 0 2020 153 3 3 chr9 94646 94954 -117767673 + AluSx SINE Alu 1 308 -4 2006 108 142 16 chr9 95270 95593 -117767034 - THE1B LTR MaLR 0 364 1 11143 90 25 15 chr9 95593 97157 -117765470 - THE1B-int LTR MaLR 0 1580 1 2199 114 76 15 chr9 97157 97500 -117765127 - THE1B LTR MaLR 0 364 1 253 253 0 36 chr9 97733 97816 -117764811 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr9 97960 97986 -117764641 + AT_rich Low_complexity Low_complexity 1 26 0 371 253 110 38 chr9 97986 98223 -117764404 + L1ME LINE L1 5546 5799 -322 2515 197 80 11 chr9 99197 99831 -117762796 - L1MC4a LINE L1 -5 7803 7126 595 302 45 5 chr9 99830 100044 -117762583 - L1ME1 LINE L1 0 6184 5947 * 186 121 35 35 chr9 100425 100483 -117762144 + T-rich Low_complexity Low_complexity 4 61 0 432 252 67 118 chr9 100632 100870 -117761757 + MER102a DNA MER1_type 96 321 -9 235 170 19 0 chr9 100872 100925 -117761702 + (TA)n Simple_repeat Simple_repeat 1 54 0 1637 243 62 51 chr9 101222 101830 -117760797 - HAL1 LINE L1 -296 2211 1597 317 270 26 12 chr9 101837 101940 -117760687 - MLT1I LTR MaLR -5 445 324 2301 106 0 0 chr9 102233 102536 -117760091 - AluSg SINE Alu -7 303 1 1015 91 8 0 chr9 102536 102668 -117759959 - AluSg SINE Alu -177 133 1 3482 262 68 63 chr9 102668 102828 -117759799 - HAL1 LINE L1 -935 1572 1414 2151 165 12 54 chr9 102828 103233 -117759394 + MLT1B LTR MaLR 3 390 0 3482 262 68 63 chr9 103233 103719 -117758908 - HAL1 LINE L1 -1093 1414 932 4926 106 26 16 chr9 103719 103772 -117758855 - L1MA3 LINE L1 -1 6304 6253 2405 74 7 0 chr9 103772 104070 -117758557 - AluSp SINE Alu -12 301 2 4926 106 26 16 chr9 104070 104759 -117757868 - L1MA3 LINE L1 -52 6253 5555 3482 262 68 63 chr9 104759 105674 -117756953 - HAL1 LINE L1 -1575 932 1 610 254 17 86 chr9 106036 106128 -117756499 - MIR SINE MIR -12 250 153 2299 84 0 0 chr9 106128 106432 -117756195 + AluSx SINE Alu 1 304 0 610 254 17 86 chr9 106432 106570 -117756057 - MIR SINE MIR -109 153 35 2964 6 0 0 chr9 106940 107257 -117755370 + AluYb8 SINE Alu 1 317 -1 548 259 41 14 chr9 107257 107404 -117755223 + L2 LINE L2 3122 3272 0 2387 187 24 2 chr9 107433 107850 -117754777 + MSTB LTR MaLR 1 426 0 2389 68 122 12 chr9 107858 108194 -117754433 - THE1C LTR MaLR -2 373 1 1097 230 149 9 chr9 109003 109325 -117753302 + L1ME3A LINE L1 5781 6147 -23 1775 151 3 40 chr9 110570 110894 -117751733 - AluJb SINE Alu 0 312 1 270 311 150 36 chr9 111260 111427 -117751200 + MER5A DNA MER1_type 4 189 0 2710 39 0 3 chr9 112041 112353 -117750274 + AluY SINE Alu 1 311 0 25 0 0 0 chr9 112644 112669 -117749958 + AT_rich Low_complexity Low_complexity 1 25 0 421 170 0 85 chr9 112732 112826 -117749801 - L1MC4 LINE L1 -159 7883 7798 2508 189 9 5 chr9 112838 113271 -117749356 - MER41D LTR ERV1 -7 550 116 24 32 0 0 chr9 113370 113401 -117749226 + AT_rich Low_complexity Low_complexity 1 31 0 711 274 112 70 chr9 113465 113939 -117748688 + MLT1L LTR MaLR 122 615 0 648 281 87 5 chr9 113979 114175 -117748452 - MIR SINE MIR -49 213 2 712 292 72 8 chr9 114379 114615 -117748012 + MIR SINE MIR 2 252 -10 622 301 104 20 chr9 114623 114922 -117747705 - MLT1K LTR MaLR -150 438 115 266 288 104 40 chr9 116471 116596 -117746031 + L2 LINE L2 3180 3312 -1 25 31 0 0 chr9 116758 116790 -117745837 + AT_rich Low_complexity Low_complexity 1 32 0 2403 80 3 0 chr9 116823 117124 -117745503 - AluSp SINE Alu -11 302 1 896 223 129 41 chr9 117485 117803 -117744824 - L2 LINE L2 0 3313 2968 259 315 83 19 chr9 118535 118643 -117743984 - MIR SINE MIR -64 144 30 517 244 93 52 chr9 118843 119015 -117743612 + MIR SINE MIR 63 241 -21 1286 181 49 61 chr9 120184 120510 -117742117 - MER33 DNA MER1_type -2 322 1 2345 51 10 3 chr9 120540 120834 -117741793 - AluSc SINE Alu -13 296 1 1714 153 32 23 chr9 123056 123364 -117739263 + AluJo SINE Alu 1 311 -1 587 283 34 34 chr9 123669 123874 -117738753 + MIR SINE MIR 2 206 -56 542 207 18 0 chr9 123874 123985 -117738642 + Charlie5 DNA MER1_type 2364 2476 -136 479 257 102 58 chr9 124503 124729 -117737898 - MIR SINE MIR -9 253 18 925 261 56 8 chr9 125625 125874 -117736753 - MIR SINE MIR 0 262 2 259 289 48 0 chr9 125897 125980 -117736647 - MIR SINE MIR 0 262 176 2187 126 3 3 chr9 125996 126306 -117736321 + AluSx SINE Alu 1 310 -2 1989 157 0 0 chr9 126423 126722 -117735905 + AluJo SINE Alu 1 299 -13 1784 79 9 0 chr9 127519 127748 -117734879 - AluSg/x SINE Alu 0 312 82 1520 100 27 9 chr9 128118 128338 -117734289 - MER2 DNA MER2_type 0 345 122 2220 97 0 39 chr9 128338 128646 -117733981 + AluSx SINE Alu 1 296 -16 610 286 43 78 chr9 128687 128780 -117733847 - L1ME LINE L1 -298 5823 5728 1768 158 0 29 chr9 128780 129090 -117733537 + AluJo SINE Alu 1 301 -11 610 286 43 78 chr9 129090 129370 -117733257 - L1ME LINE L1 -393 5728 5463 205 355 56 19 chr9 130115 130222 -117732405 - L2 LINE L2 0 3272 3162 264 278 70 35 chr9 130293 130408 -117732219 - MARNA DNA Mariner -91 495 377 384 321 62 33 chr9 130793 131033 -117731594 - MARNA DNA Mariner -321 265 19 1253 280 159 25 chr9 132373 132854 -117729773 - L2 LINE L2 0 3313 2898 2616 100 43 6 chr9 132854 133205 -117729422 - THE1B LTR MaLR 0 364 1 1253 280 159 25 chr9 133205 133666 -117728961 - L2 LINE L2 -415 2898 2228 24 0 0 0 chr9 133760 133784 -117728843 + AT_rich Low_complexity Low_complexity 1 24 0 349 208 38 28 chr9 133802 133908 -117728719 + L1ME4a LINE L1 5942 6048 -73 652 286 156 4 chr9 134208 134439 -117728188 + MLT1I LTR MaLR 137 402 -7 392 313 43 24 chr9 134763 134974 -117727653 - L2 LINE L2 -1369 1945 1731 28 0 0 0 chr9 135253 135281 -117727346 + AT_rich Low_complexity Low_complexity 1 28 0 663 226 14 20 chr9 135375 135521 -117727106 + MLT1C LTR MaLR 321 465 -2 * 1384 228 49 62 chr9 135521 136003 -117726624 - MLT1H LTR MaLR -28 521 1 196 358 74 12 chr9 136187 136268 -117726359 + L3b LINE CR1 1478 1563 -20 321 211 22 56 chr9 136592 136682 -117725945 - MLT1J LTR MaLR 0 511 425 26 0 0 0 chr9 136686 136712 -117725915 + AT_rich Low_complexity Low_complexity 1 26 0 45335 36 2 1 chr9 136712 142859 -117719768 - L1PA4 LINE L1 0 6155 2 663 320 50 60 chr9 142862 143299 -117719328 - MLT1J LTR MaLR -74 437 5 931 275 71 75 chr9 143454 143905 -117718722 - MLT1J2 LTR MaLR -1 449 1 2148 141 0 0 chr9 144181 144487 -117718140 + AluJb SINE Alu 1 306 -6 3564 152 37 19 chr9 145377 145969 -117716658 - MER6A DNA MER2_type -2 603 1 233 236 0 18 chr9 146001 146056 -117716571 + (CA)n Simple_repeat Simple_repeat 2 55 0 704 275 101 9 chr9 146550 146877 -117715750 - L1ME4a LINE L1 -150 5971 5615 553 210 114 54 chr9 147482 147649 -117714978 - L2 LINE L2 0 3313 3137 244 257 100 0 chr9 147647 147717 -117714910 + MIR SINE MIR 116 192 -70 * 4574 122 18 1 chr9 147902 148580 -117714047 - L1MA5A LINE L1 -3 6294 5606 372 219 0 0 chr9 148657 148721 -117713906 - FLAM_A SINE Alu -69 64 1 297 274 88 39 chr9 148893 148995 -117713632 + MIR3 SINE MIR 82 188 -20 30 0 0 0 chr9 149283 149313 -117713314 + AT_rich Low_complexity Low_complexity 1 30 0 314 306 209 29 chr9 149317 149523 -117713104 - MIR SINE MIR -12 250 8 2569 42 0 13 chr9 150712 151018 -117711609 + AluY SINE Alu 2 303 -8 340 236 165 16 chr9 151021 151085 -117711542 + MER112 DNA MER1_type 4 57 -203 213 39 0 0 chr9 151085 151111 -117711516 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 236 165 16 chr9 151111 151228 -117711399 + MER112 DNA MER1_type 57 212 -48 323 296 80 65 chr9 151277 151476 -117711151 + L2 LINE L2 3112 3313 0 2076 119 0 10 chr9 151995 152316 -117710311 - AluSx SINE Alu 0 312 1 1825 161 10 3 chr9 152746 153038 -117709589 + AluSx SINE Alu 1 294 -18 1511 154 60 39 chr9 153047 153332 -117709295 + AluJo SINE Alu 1 291 -21 746 191 0 0 chr9 153583 153721 -117708906 - FLAM_A SINE Alu 0 140 3 2235 60 0 14 chr9 154339 154620 -117708007 - AluY SINE Alu -9 302 26 725 189 0 9 chr9 155219 155449 -117707178 + CT-rich Low_complexity Low_complexity 1 227 0 2082 105 0 52 chr9 156411 156736 -117705891 - AluSx SINE Alu -4 308 1 187 315 39 85 chr9 157441 157746 -117704881 - L2 LINE L2 -1218 2096 1806 551 191 29 0 chr9 158460 158565 -117704062 + MIR SINE MIR 89 196 -66 2269 112 0 3 chr9 158776 159081 -117703546 - AluSg SINE Alu -6 304 1 275 276 17 0 chr9 159160 159227 -117703400 - MIR SINE MIR -89 119 51 2248 83 21 3 chr9 159329 159619 -117703008 + AluSx SINE Alu 1 295 -17 409 272 61 50 chr9 161634 161814 -117700813 + MER5A DNA MER1_type 8 189 0 2456 88 0 0 chr9 162194 162502 -117700125 + AluSx SINE Alu 1 308 -4 285 245 158 50 chr9 163155 163294 -117699333 + MIR SINE MIR 36 189 -73 399 246 146 9 chr9 163593 163703 -117698924 + L2 LINE L2 3189 3313 0 967 115 23 152 chr9 164252 164320 -117698307 - MER5A DNA MER1_type 0 189 114 2351 88 3 0 chr9 164320 164625 -117698002 - AluSc SINE Alu -3 306 1 967 115 23 152 chr9 164625 164773 -117697854 - MER5A DNA MER1_type -75 114 1 2417 95 0 0 chr9 165401 165706 -117696921 - AluSx SINE Alu -7 305 1 1735 164 24 7 chr9 165833 166125 -117696502 + AluJo SINE Alu 1 297 -15 420 272 239 9 chr9 166260 166473 -117696154 + MIR SINE MIR 1 262 0 421 271 51 0 chr9 166929 167047 -117695580 + L2 LINE L2 2234 2357 -957 681 238 157 20 chr9 167302 167606 -117695021 + L1MC4a LINE L1 5531 5829 -341 460 213 28 0 chr9 167605 167713 -117694914 + L1ME2 LINE L1 5751 5861 -303 * 811 61 0 0 chr9 167816 167915 -117694712 + AluY SINE Alu 204 302 -9 22 0 0 0 chr9 168118 168140 -117694487 + AT_rich Low_complexity Low_complexity 1 22 0 1410 251 80 20 chr9 168207 168793 -117693834 - L1MEc LINE L1 -3288 2927 2307 386 0 0 39 chr9 168794 168845 -117693782 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 370 157 0 0 chr9 168848 168918 -117693709 + L1PA15 LINE L1 6096 6165 0 2161 206 140 27 chr9 168931 169517 -117693110 + L1ME1 LINE L1 5379 6030 -136 487 196 47 0 chr9 169517 169624 -117693003 + L1MA10 LINE L1 6216 6327 -7 287 290 103 30 chr9 169631 169733 -117692894 - L1MEc LINE L1 -4039 2357 2264 2214 113 0 0 chr9 169733 170033 -117692594 + AluSx SINE Alu 1 300 -12 287 290 103 30 chr9 170033 170863 -117691764 - L1MEc LINE L1 -4132 2264 1248 275 287 0 0 chr9 171407 171494 -117691133 + (TA)n Simple_repeat Simple_repeat 2 88 0 2393 88 0 0 chr9 171735 172040 -117690587 - AluSq SINE Alu -8 305 1 344 364 8 8 chr9 172620 172752 -117689875 - MIR3 SINE MIR -19 189 58 279 0 0 0 chr9 173173 173204 -117689423 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 466 290 45 28 chr9 173233 173409 -117689218 - MER5A DNA MER1_type 0 189 11 2199 130 0 3 chr9 174007 174314 -117688313 - AluJb SINE Alu -6 306 1 408 312 58 56 chr9 174482 174982 -117687645 - L1ME4a LINE L1 -238 5883 5385 4037 169 28 27 chr9 175870 176361 -117686266 - L1MB8 LINE L1 -14 6164 5670 2260 115 0 7 chr9 176361 176666 -117685961 - AluSx SINE Alu -9 303 1 4037 169 28 27 chr9 176666 176924 -117685703 - L1MB8 LINE L1 -508 5670 5414 269 259 0 12 chr9 178922 178946 -117683681 - L1MA10 LINE L1 0 6334 6311 673 264 48 39 chr9 178946 179177 -117683450 - L1ME1 LINE L1 -14 6152 5920 1958 126 10 14 chr9 179199 179492 -117683135 - AluJo SINE Alu -20 292 1 29 47 0 0 chr9 180222 180265 -117682362 + AT_rich Low_complexity Low_complexity 1 43 0 2145 102 3 58 chr9 180489 180814 -117681813 - AluSp SINE Alu -6 307 1 264 122 0 0 chr9 181271 181312 -117681315 + (T)n Simple_repeat Simple_repeat 1 41 0 424 300 40 27 chr9 181819 181969 -117680658 + MIR SINE MIR 20 171 -91 523 197 311 0 chr9 182237 182369 -117680258 + MER5B DNA MER1_type 5 177 -1 25 0 0 0 chr9 182381 182406 -117680221 + AT_rich Low_complexity Low_complexity 1 25 0 2259 97 0 0 chr9 182409 182697 -117679930 - AluSx SINE Alu -24 288 1 2123 127 0 0 chr9 182700 182999 -117679628 - AluSx SINE Alu -13 299 1 1924 138 7 7 chr9 183611 183917 -117678710 - AluJb SINE Alu 0 306 1 1799 153 0 32 chr9 183941 184249 -117678378 + AluJo SINE Alu 1 298 -14 349 20 40 0 chr9 184249 184299 -117678328 + (GAGAA)n Simple_repeat Simple_repeat 1 52 0 183 204 0 0 chr9 184349 184393 -117678234 + GA-rich Low_complexity Low_complexity 3 46 0 2233 283 114 20 chr9 185188 186276 -117676351 - L2 LINE L2 0 3313 2120 301 260 68 0 chr9 186315 186388 -117676239 + MER81 DNA DNA 1 78 -36 438 193 175 0 chr9 186412 186526 -117676101 - L2 LINE L2 -1297 2017 1884 270 179 36 0 chr9 186706 186762 -117675865 + MIR SINE MIR 84 141 -121 181 143 163 20 chr9 187133 187182 -117675445 + L2 LINE L2 3216 3271 -1 409 242 80 106 chr9 187189 187528 -117675099 - MLT2C1 LTR ERVL -1 396 67 * 664 179 23 37 chr9 187383 187566 -117675061 - MLT1E1 LTR MaLR -376 278 46 * 717 207 14 7 chr9 187565 187710 -117674917 - MLT2F LTR ERVL -517 146 1 2029 128 21 0 chr9 187780 188069 -117674558 + AluSx SINE Alu 1 295 -17 270 143 0 0 chr9 188426 188475 -117674152 + (TG)n Simple_repeat Simple_repeat 2 50 0 191 254 110 85 chr9 188973 189091 -117673536 + L2 LINE L2 3187 3307 -6 1476 181 26 32 chr9 189217 189526 -117673101 - AluJo SINE Alu 0 312 6 476 244 122 0 chr9 189932 190055 -117672572 + MIR SINE MIR 11 148 -114 1868 155 0 24 chr9 190055 190209 -117672418 + MER46B DNA MER2_type 1 19 -2712 2216 157 23 0 chr9 190209 190560 -117672067 - L1PB4 LINE L1 0 6156 5798 1868 155 0 24 chr9 190560 190734 -117671893 + MER46B DNA MER2_type 19 196 -40 307 235 133 10 chr9 190752 190850 -117671777 + MIR SINE MIR 148 257 -5 4138 83 13 0 chr9 191382 191913 -117670714 + L1PA14 LINE L1 5624 6161 0 336 228 238 0 chr9 193705 193806 -117668821 + MIR SINE MIR 16 140 -122 233 200 0 0 chr9 193905 193945 -117668682 - MIR SINE MIR -6 256 217 796 191 0 22 chr9 194701 194837 -117667790 + FLAM_A SINE Alu 1 133 0 773 308 76 0 chr9 195129 195366 -117667261 + MIR SINE MIR 6 260 -2 733 276 43 30 chr9 195377 195609 -117667018 - MIR SINE MIR -22 240 6 23 0 0 0 chr9 196416 196439 -117666188 + AT_rich Low_complexity Low_complexity 1 23 0 2072 143 56 30 chr9 196444 196941 -117665686 - L1MC2 LINE L1 0 6344 5752 1482 123 45 18 chr9 196978 197198 -117665429 - MER30 DNA MER1_type 0 230 5 580 278 88 10 chr9 198265 198571 -117664056 - L1ME4a LINE L1 -202 5919 5590 1887 155 3 26 chr9 198590 198899 -117663728 + AluJo SINE Alu 2 303 -9 2374 71 6 52 chr9 198899 199222 -117663405 + AluSp SINE Alu 1 309 -4 346 274 110 51 chr9 199338 199630 -117662997 - L1ME4a LINE L1 -748 5398 5090 183 42 0 0 chr9 200252 200276 -117662351 + (GGAGAA)n Simple_repeat Simple_repeat 3 26 0 398 315 144 27 chr9 200956 201254 -117661373 - L1ME LINE L1 -311 5810 5478 1767 193 34 70 chr9 201379 201686 -117660941 + L1ME1 LINE L1 5594 5880 -286 2418 102 0 0 chr9 201686 201990 -117660637 + AluSx SINE Alu 1 304 -8 1767 193 34 70 chr9 201990 202154 -117660473 + L1ME1 LINE L1 5880 6048 -118 230 243 71 0 chr9 203905 203975 -117658652 + GA-rich Low_complexity Low_complexity 2 76 0 470 322 38 17 chr9 203982 204178 -117658449 - MIR SINE MIR -59 203 3 2174 132 0 0 chr9 204951 205261 -117657366 + AluSx SINE Alu 1 310 -2 244 237 103 52 chr9 205300 205397 -117657230 - MIR3 SINE MIR -10 198 97 324 0 0 0 chr9 205427 205463 -117657164 + (TG)n Simple_repeat Simple_repeat 2 37 0 1370 142 0 5 chr9 206167 206371 -117656256 - AluJb SINE Alu -109 203 1 2413 64 7 3 chr9 206548 206844 -117655783 + AluY SINE Alu 1 297 -14 10681 213 63 13 chr9 207245 209655 -117652972 + L1PA16 LINE L1 3078 5566 -600 1746 152 6 108 chr9 209655 209990 -117652637 + AluJo SINE Alu 1 301 -1 10681 213 63 13 chr9 209990 210624 -117652003 + L1PA16 LINE L1 5566 6166 0 734 303 49 12 chr9 211825 212069 -117650558 + MIR SINE MIR 10 262 0 2494 62 0 10 chr9 212085 212393 -117650234 - AluY SINE Alu -6 305 1 725 188 17 15 chr9 212597 212870 -117649757 + L1MB3 LINE L1 5657 6123 -60 199 267 67 0 chr9 212875 212935 -117649692 - MIR SINE MIR -118 144 81 389 229 59 20 chr9 213264 213417 -117649210 - LTR33A LTR ERVL -25 498 340 843 190 49 33 chr9 213424 213608 -117649019 - MER5A DNA MER1_type 0 189 3 773 236 170 66 chr9 213614 214058 -117648569 - LTR50 LTR ERVL -210 585 17 2541 77 6 0 chr9 214155 214466 -117648161 - AluSp SINE Alu 0 313 1 4660 115 27 3 chr9 214487 215156 -117647471 + L1MA5 LINE L1 5609 6293 -7 529 307 63 31 chr9 215361 215470 -117647157 - L1ME4a LINE L1 -179 5942 5838 2225 98 0 7 chr9 215470 215765 -117646862 - AluSc SINE Alu -16 293 1 529 307 63 31 chr9 215765 216004 -117646623 - L1ME4a LINE L1 -283 5838 5583 264 150 0 0 chr9 216741 216781 -117645846 - Alu SINE Alu -19 283 244 2258 105 3 0 chr9 216794 217089 -117645538 + AluSq SINE Alu 1 296 -17 2199 86 0 7 chr9 217278 217556 -117645071 - AluSq SINE Alu -24 289 14 589 218 58 13 chr9 217625 217781 -117644846 + MLT1E LTR MaLR 1 163 -430 1952 135 7 3 chr9 217812 218108 -117644519 + AluSx SINE Alu 1 297 -15 1222 186 4 52 chr9 218112 218360 -117644267 - AluJo SINE Alu -76 236 1 1699 158 63 26 chr9 220315 220664 -117641963 + L1MA7 LINE L1 5880 6241 -50 525 141 10 10 chr9 220659 220758 -117641869 + L1MA7 LINE L1 6192 6290 -1 * 266 160 64 85 chr9 221865 221959 -117640668 - MLT1K LTR MaLR -16 572 481 1407 205 45 40 chr9 222166 222600 -117640027 + L1MC5 LINE L1 7499 7917 -44 791 274 45 0 chr9 224233 224434 -117638193 - MER63A DNA MER1_type 0 210 1 398 304 142 28 chr9 224489 224736 -117637891 - Charlie8 DNA MER1_type -2141 276 2 314 227 23 34 chr9 224867 224955 -117637672 - Charlie7 DNA MER1_type -2500 112 26 183 333 32 11 chr9 225206 225299 -117637328 + MIR3 SINE MIR 108 202 -6 1691 156 53 11 chr9 225823 226105 -117636522 + AluJo SINE Alu 1 294 -18 324 285 27 97 chr9 226717 226903 -117635724 - MER5A DNA MER1_type -11 178 6 460 344 81 9 chr9 229234 229455 -117633172 + MIR SINE MIR 20 256 -6 2128 136 0 0 chr9 229619 229921 -117632706 + AluSq SINE Alu 1 302 -11 2984 114 21 44 chr9 229993 230027 -117632600 - L1MB3 LINE L1 -11 6172 6139 2380 93 3 0 chr9 230027 230329 -117632298 - AluSg SINE Alu -7 303 1 2984 114 21 44 chr9 230329 230776 -117631851 - L1MB3 LINE L1 -44 6139 5702 327 328 39 56 chr9 230779 230959 -117631668 - MIR SINE MIR -39 223 47 2916 105 36 27 chr9 231637 232075 -117630552 - L1PB3 LINE L1 0 6154 5713 682 260 136 41 chr9 233174 233225 -117629402 - MLT1J1 LTR MaLR -10 440 395 1345 128 11 0 chr9 233225 233412 -117629215 - MER5A DNA MER1_type 0 189 1 682 260 136 41 chr9 233412 233734 -117628893 - MLT1J1 LTR MaLR -55 395 64 1885 155 3 13 chr9 234201 234505 -117628122 - AluJb SINE Alu -11 301 1 472 297 34 7 chr9 235162 235310 -117627317 + MIR SINE MIR 29 180 -82 2270 109 3 6 chr9 235747 236060 -117626567 - AluSq SINE Alu -1 312 1 205 233 233 58 chr9 237283 237455 -117625172 + MIR SINE MIR 49 250 -12 221 240 180 80 chr9 237940 238040 -117624587 + L2 LINE L2 3153 3262 -10 535 239 127 29 chr9 238860 239174 -117623453 - L1ME4a LINE L1 -6 6115 5771 1778 184 3 3 chr9 239457 239766 -117622861 - AluJo SINE Alu -3 309 1 2413 81 0 0 chr9 240128 240424 -117622203 + AluY SINE Alu 1 296 -15 2208 109 3 3 chr9 241612 241914 -117620713 + AluSx SINE Alu 5 306 -6 474 283 17 52 chr9 243617 243640 -117618987 + MIR SINE MIR 93 115 -147 2623 144 60 0 chr9 243640 244042 -117618585 - MSTC LTR MaLR -2 426 1 474 283 17 52 chr9 244042 244191 -117618436 + MIR SINE MIR 115 259 -3 1162 172 8 64 chr9 244481 244682 -117617945 + L1MB2 LINE L1 5933 6119 -52 2327 94 7 0 chr9 244682 244980 -117617647 + AluSx SINE Alu 1 300 -12 1162 172 8 64 chr9 244980 245028 -117617599 + L1MB2 LINE L1 6119 6168 -3 182 270 160 50 chr9 245092 245192 -117617435 + L3 LINE CR1 1098 1208 -369 232 242 129 73 chr9 245212 245336 -117617291 + MIR SINE MIR 73 203 -59 348 351 179 0 chr9 245448 245616 -117617011 + L3 LINE CR1 1272 1469 -108 2302 94 0 3 chr9 246325 246622 -117616005 - AluSc SINE Alu -13 296 1 206 304 0 14 chr9 246685 246754 -117615873 - MIR3 SINE MIR -6 202 135 1998 148 3 0 chr9 247148 247452 -117615175 + AluSx SINE Alu 1 305 -7 735 229 71 0 chr9 247863 248046 -117614581 + MER3 DNA MER1_type 9 204 -5 3879 108 19 23 chr9 248514 249043 -117613584 + MER1A DNA MER1_type 1 527 0 234 105 0 0 chr9 249089 249127 -117613500 + (T)n Simple_repeat Simple_repeat 1 38 0 2318 106 0 0 chr9 249270 249572 -117613055 - AluSg SINE Alu -4 306 5 449 304 130 20 chr9 249578 249877 -117612750 - L1ME3 LINE L1 -337 5825 5494 258 225 8 150 chr9 249904 250024 -117612603 - MIR3 SINE MIR -28 180 78 1285 199 68 14 chr9 250026 250307 -117612320 + AluJo SINE Alu 1 296 -16 2081 111 3 24 chr9 251574 251871 -117610756 + AluSq SINE Alu 1 291 -22 234 0 0 0 chr9 252578 252605 -117610022 - MADE1 DNA Mariner 0 80 54 1917 141 7 7 chr9 254032 254331 -117608296 + AluJb SINE Alu 3 301 -11 1523 193 4 7 chr9 256917 257192 -117605435 - AluJo SINE Alu -10 302 29 2244 90 7 3 chr9 259270 259558 -117603069 + AluSg SINE Alu 1 289 -21 248 258 32 0 chr9 259805 259867 -117602760 - L2 LINE L2 0 3272 3209 1962 112 0 0 chr9 260858 261118 -117601509 + AluSq SINE Alu 1 260 -53 1260 215 72 99 chr9 261274 261828 -117600799 - MLT1F1 LTR MaLR 0 567 29 2321 104 3 3 chr9 262001 262310 -117600317 - AluSc SINE Alu 0 309 1 2507 69 0 7 chr9 263055 263361 -117599266 + AluY SINE Alu 1 304 -7 234 91 0 0 chr9 264260 264293 -117598334 + (TC)n Simple_repeat Simple_repeat 2 34 0 1820 128 21 52 chr9 264879 265198 -117597429 - AluJo SINE Alu 0 314 5 2303 122 0 0 chr9 265375 265687 -117596940 + AluSx SINE Alu 1 312 0 276 242 333 0 chr9 265790 265910 -117596717 - MER5A DNA MER1_type 0 189 30 410 276 35 8 chr9 266071 266226 -117596401 + MIR SINE MIR 8 169 -62 189 0 0 0 chr9 266612 266633 -117595994 + (A)n Simple_repeat Simple_repeat 1 21 0 2315 112 0 10 chr9 266842 267154 -117595473 + AluSx SINE Alu 1 309 -3 1551 188 3 30 chr9 267686 267984 -117594643 + AluJo SINE Alu 1 290 -22 339 255 0 21 chr9 270431 270525 -117592102 + MIR3 SINE MIR 95 186 -22 412 239 99 59 chr9 270922 271144 -117591483 + L1ME4a LINE L1 5685 5915 -206 1903 168 0 13 chr9 271159 271468 -117591159 + AluJb SINE Alu 1 305 -7 305 329 264 3 chr9 271718 272099 -117590528 - L2 LINE L2 -223 3049 2575 315 268 12 0 chr9 272474 272556 -117590071 - MIR SINE MIR -149 113 31 849 242 19 53 chr9 273753 274017 -117588610 + MIR SINE MIR 8 262 0 530 183 23 53 chr9 274065 274196 -117588431 - L2 LINE L2 0 3313 3187 30 45 0 0 chr9 275447 275491 -117587136 + AT_rich Low_complexity Low_complexity 1 44 0 2167 96 55 0 chr9 275616 275907 -117586720 - AluSq SINE Alu 0 313 7 445 279 85 42 chr9 276093 276258 -117586369 + MER91A DNA MER1_type 1 172 -24 1943 148 7 3 chr9 276613 276910 -117585717 - AluJb SINE Alu -14 298 1 664 154 36 0 chr9 279599 279709 -117582918 + AluSq SINE Alu 41 154 -159 2156 79 0 8 chr9 279710 280001 -117582626 + AluSx SINE Alu 21 309 0 878 203 89 54 chr9 280092 280408 -117582219 - L1MC5 LINE L1 -182 7779 7453 380 278 71 35 chr9 280764 280933 -117581694 + MIR SINE MIR 34 208 -54 1296 164 80 42 chr9 281032 281261 -117581366 + MER33 DNA MER1_type 1 247 -2338 1996 154 0 13 chr9 281261 281573 -117581054 - AluJo SINE Alu -4 308 1 1296 164 80 42 chr9 281573 281654 -117580973 + MER33 DNA MER1_type 247 323 -1 596 312 63 28 chr9 281671 281988 -117580639 - MER102b DNA MER1_type -8 333 6 244 261 22 80 chr9 282381 282519 -117580108 - MIR3 SINE MIR -3 205 76 2055 137 3 0 chr9 282522 282807 -117579820 + AluJb SINE Alu 1 286 -26 720 183 92 0 chr9 284444 284586 -117578041 - L1MB7 LINE L1 -44 6140 5986 343 285 51 0 chr9 285762 285899 -117576728 - L2 LINE L2 -212 3060 2917 240 192 51 51 chr9 286198 286276 -117576351 - MER5A DNA MER1_type -98 91 14 406 249 92 43 chr9 286814 287197 -117575430 + AluSx SINE Alu 2 197 -105 427 256 110 42 chr9 287197 287628 -117574999 + AluSx SINE Alu 2 204 -98 1795 164 0 11 chr9 287628 287908 -117574719 + AluJo SINE Alu 6 282 -30 225 0 0 0 chr9 287911 287936 -117574691 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2044 143 0 13 chr9 288481 288781 -117573846 + AluJb SINE Alu 1 296 -16 597 254 54 22 chr9 288934 289119 -117573508 + Charlie8 DNA MER1_type 75 265 -2152 2365 93 3 19 chr9 289925 290060 -117572567 + AluSq SINE Alu 1 137 -176 2242 108 10 0 chr9 290060 290356 -117572271 + AluSq SINE Alu 1 299 -14 2365 93 3 19 chr9 290356 290533 -117572094 + AluSq SINE Alu 137 308 -5 1677 185 83 0 chr9 290635 290998 -117571629 - L1MC3 LINE L1 0 7785 7393 318 169 0 101 chr9 291005 291094 -117571533 - L1MB7 LINE L1 -19 6165 6086 229 330 10 0 chr9 291272 291372 -117571255 + MIR SINE MIR 35 135 -73 2513 68 0 0 chr9 291442 291750 -117570877 + AluY SINE Alu 1 308 -3 226 241 0 0 chr9 291793 291847 -117570780 + MER116 DNA Mariner 2 55 -25 785 173 20 0 chr9 291852 292002 -117570625 - MER63B DNA MER1_type 0 434 282 1042 188 73 0 chr9 292002 292220 -117570407 + L1MD3 LINE L1 7730 7963 -32 956 235 91 30 chr9 292222 292520 -117570107 - MER63B DNA MER1_type -118 318 3 24 53 0 0 chr9 292618 292656 -117569971 + AT_rich Low_complexity Low_complexity 1 38 0 1056 140 62 6 chr9 293427 293606 -117569021 - MER5A DNA MER1_type 0 189 1 2271 112 3 0 chr9 293969 294273 -117568354 + AluSx SINE Alu 1 305 -7 2127 127 3 13 chr9 295361 295661 -117566966 - AluSx SINE Alu -15 297 1 413 333 0 0 chr9 295909 296023 -117566604 + MER81 DNA DNA 1 114 0 357 256 23 38 chr9 296319 296372 -117566255 - MIR3 SINE MIR -2 206 154 647 185 204 0 chr9 296372 296400 -117566227 + MER5A DNA MER1_type 1 22 -167 261 0 0 0 chr9 296400 296429 -117566198 + (CAG)n Simple_repeat Simple_repeat 1 29 0 647 185 204 0 chr9 296429 296541 -117566086 + MER5A DNA MER1_type 22 178 -11 1654 134 37 50 chr9 296541 296840 -117565787 + AluJb SINE Alu 1 295 -17 647 185 204 0 chr9 296840 296855 -117565772 + MER5A DNA MER1_type 178 189 0 357 256 23 38 chr9 296855 296934 -117565693 - MIR3 SINE MIR -54 154 76 686 302 122 26 chr9 297456 298256 -117564371 + L2 LINE L2 2432 3304 -9 207 0 0 0 chr9 298629 298652 -117563975 + (T)n Simple_repeat Simple_repeat 1 23 0 2203 121 3 0 chr9 298664 298961 -117563666 + AluSq SINE Alu 1 298 -15 1283 152 5 0 chr9 299725 299922 -117562705 + AluJo SINE Alu 114 311 -1 376 191 35 71 chr9 300157 300298 -117562329 - MIR SINE MIR 0 262 127 706 320 39 48 chr9 300596 301111 -117561516 - LTR33 LTR ERVL -4 517 8 315 0 0 0 chr9 302339 302374 -117560253 + (TAG)n Simple_repeat Simple_repeat 1 35 0 230 179 0 15 chr9 302664 302731 -117559896 + (TA)n Simple_repeat Simple_repeat 2 67 0 298 147 0 44 chr9 303747 303815 -117558812 + L1ME4a LINE L1 6056 6120 -1 1597 128 4 32 chr9 303930 304179 -117558448 + AluSx SINE Alu 62 303 -9 1150 222 15 11 chr9 304194 304214 -117558413 + L1MC4 LINE L1 7775 7793 -249 2117 123 0 3 chr9 304214 304506 -117558121 + AluSx SINE Alu 1 291 -21 1150 222 15 11 chr9 304506 304751 -117557876 + L1MC4 LINE L1 7793 8041 -1 255 335 49 18 chr9 304856 305020 -117557607 - MIR SINE MIR -40 222 54 23 33 0 0 chr9 305343 305373 -117557254 + AT_rich Low_complexity Low_complexity 1 30 0 358 205 134 0 chr9 305647 305759 -117556868 + L1ME4a LINE L1 5879 6005 -116 1113 156 0 8 chr9 306698 307001 -117555626 + (CCA)n Simple_repeat Simple_repeat 1 477 0 933 140 0 0 chr9 307001 307179 -117555448 + (CCA)n Simple_repeat Simple_repeat 2 179 0 1092 106 0 0 chr9 307196 307375 -117555252 + (CCA)n Simple_repeat Simple_repeat 1 179 0 1113 117 0 0 chr9 307536 307901 -117554726 + (CCA)n Simple_repeat Simple_repeat 1 365 0 226 354 13 0 chr9 308097 308176 -117554451 + MIR SINE MIR 66 145 -63 1873 219 54 46 chr9 308177 308717 -117553910 - LTR55 LTR ERV -4 544 1 262 167 0 0 chr9 308766 308808 -117553819 + 5S rRNA rRNA 1 42 -79 286 290 9 19 chr9 309160 309267 -117553360 + CT-rich Low_complexity Low_complexity 2 107 0 328 333 57 0 chr9 309290 309413 -117553214 + MIR3 SINE MIR 31 160 -48 2128 122 3 0 chr9 309867 310161 -117552466 - AluSx SINE Alu -17 295 1 1964 110 15 15 chr9 310574 310831 -117551796 + AluSx SINE Alu 21 277 -35 315 0 0 0 chr9 310831 310866 -117551761 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 870 83 0 0 chr9 310865 310985 -117551642 + (TA)n Simple_repeat Simple_repeat 1 120 0 1964 110 15 15 chr9 310866 310999 -117551628 + AluSx SINE Alu 276 292 -20 301 205 70 123 chr9 312378 312549 -117550078 + MER103 DNA DNA 3 164 -2 1803 159 23 7 chr9 313184 313486 -117549141 + AluSx SINE Alu 1 307 -5 219 292 22 0 chr9 313707 313796 -117548831 + MIR SINE MIR 81 171 -91 398 174 61 98 chr9 314718 314850 -117547777 - L2 LINE L2 0 3313 3187 345 140 0 0 chr9 315834 315891 -117546736 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 57 0 0 chr9 316511 316546 -117546081 + AT_rich Low_complexity Low_complexity 1 35 0 3550 43 86 0 chr9 316554 316975 -117545652 - L1PA5 LINE L1 0 6154 5698 491 36 0 0 chr9 316975 317031 -117545596 + L1PA5 LINE L1 5654 5709 -445 544 256 145 0 chr9 317099 317306 -117545321 - L1ME3 LINE L1 -2 6160 5924 569 251 74 39 chr9 317307 317538 -117545089 - L1ME3 LINE L1 -279 5883 5645 8724 196 42 51 chr9 317633 318103 -117544524 + L1MB7 LINE L1 3077 3550 -2634 2143 114 0 0 chr9 318103 318384 -117544243 + AluSq SINE Alu 1 281 -32 198 0 0 0 chr9 318387 318409 -117544218 + (TAA)n Simple_repeat Simple_repeat 2 23 0 8724 196 42 51 chr9 318409 319093 -117543534 + L1MB7 LINE L1 3552 4240 -1944 1976 159 0 6 chr9 319093 319407 -117543220 + AluJb SINE Alu 1 312 0 8724 196 42 51 chr9 319407 320830 -117541797 + L1MB7 LINE L1 4240 5624 -560 2105 101 38 7 chr9 320830 321118 -117541509 + AluSq SINE Alu 1 297 -16 8724 196 42 51 chr9 321118 321368 -117541259 + L1MB7 LINE L1 5624 5875 -309 238 266 78 0 chr9 321371 321435 -117541192 - MIR SINE MIR -192 70 2 185 293 86 0 chr9 321511 321569 -117541058 - MIR SINE MIR -198 64 2 202 276 86 0 chr9 321578 321636 -117540991 - MIR SINE MIR -198 64 2 247 271 18 53 chr9 322045 322150 -117540477 - Charlie7 DNA MER1_type -1 2611 2513 213 39 0 0 chr9 322150 322176 -117540451 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 247 271 18 53 chr9 322176 322240 -117540387 - Charlie7 DNA MER1_type -99 2513 2448 204 206 0 0 chr9 322632 322666 -117539961 + (CGTG)n Simple_repeat Simple_repeat 4 37 0 353 338 54 39 chr9 323598 323802 -117538825 + MIR SINE MIR 19 225 -37 1803 130 45 0 chr9 323985 324278 -117538349 + AluSx SINE Alu 1 305 0 2111 109 26 13 chr9 325236 325540 -117537087 - AluSx SINE Alu -4 308 1 748 226 164 47 chr9 329464 329686 -117532941 + L1ME4a LINE L1 5666 5861 -260 2283 96 0 0 chr9 329686 329979 -117532648 + AluSx SINE Alu 12 304 -8 748 226 164 47 chr9 329979 330164 -117532463 + L1ME4a LINE L1 5861 6121 0 22 70 0 0 chr9 330564 330607 -117532020 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 331098 331119 -117531508 + AT_rich Low_complexity Low_complexity 1 21 0 729 229 38 0 chr9 331179 331336 -117531291 + MER5B DNA MER1_type 1 163 -15 2138 152 0 0 chr9 331372 331682 -117530945 - AluJb SINE Alu -2 310 1 646 142 21 57 chr9 331683 331824 -117530803 + L1MB4 LINE L1 6045 6180 0 1475 173 51 19 chr9 331858 332171 -117530456 + MER33 DNA MER1_type 2 324 0 2509 68 0 0 chr9 332223 332531 -117530096 + AluYb8 SINE Alu 1 308 -10 271 100 0 0 chr9 332540 332580 -117530047 + L1MB3 LINE L1 6133 6172 -11 1124 123 59 0 chr9 332581 332751 -117529876 + AluJo SINE Alu 125 304 -8 280 304 109 38 chr9 334275 334459 -117528168 + MER117 DNA MER1_type 1 197 0 2052 120 3 0 chr9 335933 336239 -117526388 - AluSx SINE Alu 0 307 1 2030 157 3 0 chr9 337065 337371 -117525256 + AluSx SINE Alu 1 307 -5 1867 126 55 14 chr9 337374 337667 -117524960 + AluSx SINE Alu 3 307 -5 1750 164 7 20 chr9 337841 338146 -117524481 - AluJo SINE Alu -11 301 1 1843 134 22 0 chr9 338487 338763 -117523864 - AluSx SINE Alu -18 294 13 228 204 20 0 chr9 339351 339400 -117523227 + (TA)n Simple_repeat Simple_repeat 1 50 0 29 47 0 0 chr9 341150 341193 -117521434 + AT_rich Low_complexity Low_complexity 1 43 0 1243 142 32 41 chr9 341977 342196 -117520431 + MER20 DNA MER1_type 1 217 -2 304 245 135 74 chr9 342283 342446 -117520181 - MIR SINE MIR -5 257 85 21 0 0 0 chr9 343507 343528 -117519099 + AT_rich Low_complexity Low_complexity 1 21 0 928 261 97 44 chr9 344092 344505 -117518122 - MLT1K LTR MaLR -25 563 129 263 232 58 29 chr9 345108 345177 -117517450 + 7SK RNA RNA 7 77 -116 732 296 16 0 chr9 345179 345368 -117517259 + MER117 DNA MER1_type 5 196 -1 528 289 16 0 chr9 345486 345607 -117517020 + MER96 DNA MER1_type? 50 172 -3 308 274 12 12 chr9 346623 346707 -117515920 - MIR SINE MIR -111 151 68 2100 132 0 3 chr9 346992 347288 -117515339 - AluSx SINE Alu -13 299 5 22 0 0 0 chr9 347442 347464 -117515163 + AT_rich Low_complexity Low_complexity 1 22 0 1704 174 23 7 chr9 347702 348006 -117514621 - AluJo SINE Alu -3 309 1 198 404 11 9 chr9 349881 350017 -117512610 - MIR3 SINE MIR -89 119 13 770 302 60 8 chr9 350675 350923 -117511704 - MIR SINE MIR 0 262 2 1113 268 140 49 chr9 351117 351308 -117511319 - MER21B LTR ERV1 -154 709 537 270 0 0 0 chr9 351308 351338 -117511289 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1113 268 140 49 chr9 351338 351796 -117510831 - MER21B LTR ERV1 -326 537 1 1620 218 40 17 chr9 352480 352999 -117509628 - L1ME1 LINE L1 -28 6138 5441 38 107 0 0 chr9 353777 353927 -117508700 + AT_rich Low_complexity Low_complexity 1 150 0 203 0 37 0 chr9 355008 355035 -117507592 + (TTTCC)n Simple_repeat Simple_repeat 2 29 0 1646 156 13 49 chr9 355067 355375 -117507252 - AluJo SINE Alu -10 302 6 2226 131 12 72 chr9 355435 355840 -117506787 - MLT1B LTR MaLR -7 383 3 2142 117 3 0 chr9 356041 356323 -117506304 + AluSp SINE Alu 1 309 0 214 39 0 0 chr9 356323 356349 -117506278 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 394 307 136 6 chr9 356396 356572 -117506055 + MIR SINE MIR 20 218 -44 2172 128 7 0 chr9 358004 358310 -117504317 + AluSx SINE Alu 2 309 -3 1822 162 7 3 chr9 358314 358611 -117504016 + AluJb SINE Alu 1 298 -14 315 167 0 62 chr9 358847 358943 -117503684 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr9 358950 358975 -117503652 + (T)n Simple_repeat Simple_repeat 1 25 0 1096 176 11 0 chr9 359124 359311 -117503316 + MER5A DNA MER1_type 1 189 0 461 253 15 32 chr9 359393 359551 -117503076 - MIR SINE MIR -56 152 28 2142 148 0 0 chr9 360395 360699 -117501928 - AluSx SINE Alu -8 304 1 444 132 15 0 chr9 360701 360769 -117501858 - AluJo SINE Alu -178 134 66 31 26 0 0 chr9 360781 360819 -117501808 + AT_rich Low_complexity Low_complexity 1 38 0 1556 135 135 17 chr9 361174 361470 -117501157 + MER44D DNA MER2_type 1 601 -8 574 203 104 12 chr9 362125 362185 -117500442 - MER5A DNA MER1_type -3 186 133 2001 111 3 51 chr9 362185 362501 -117500126 + AluJb SINE Alu 1 301 -11 574 203 104 12 chr9 362501 362603 -117500024 - MER5A DNA MER1_type -56 133 9 213 65 0 0 chr9 362740 362771 -117499856 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 298 113 75 0 chr9 362883 362936 -117499691 - L2 LINE L2 0 3313 3257 392 216 18 9 chr9 363081 363192 -117499435 + L1MB8 LINE L1 6064 6175 -3 760 249 72 17 chr9 364171 364408 -117498219 + MIR SINE MIR 2 251 -11 366 275 36 22 chr9 364557 364695 -117497932 + MIR3 SINE MIR 30 169 -39 932 263 22 0 chr9 364785 365013 -117497614 - MIR SINE MIR -29 233 1 813 234 202 55 chr9 365023 365458 -117497169 - MLT1J LTR MaLR -12 499 1 1832 156 10 10 chr9 365501 365789 -117496838 + AluJb SINE Alu 1 288 -24 311 150 62 0 chr9 366414 366484 -117496143 - MLT1G LTR MaLR -5 590 482 577 267 241 12 chr9 366675 367028 -117495599 - MLT1G LTR MaLR -196 394 1 270 192 55 27 chr9 367064 367137 -117495490 - MIR SINE MIR -70 192 118 646 238 70 70 chr9 368220 368500 -117494127 - L1MEd LINE L1 -4897 1222 940 2030 159 0 6 chr9 368500 368814 -117493813 - AluJb SINE Alu 0 312 1 646 238 70 70 chr9 368814 368861 -117493766 - L1MEd LINE L1 -5178 941 895 578 308 81 65 chr9 368881 369785 -117492842 - L1MEd LINE L1 -5191 928 11 435 303 86 6 chr9 369835 370010 -117492617 + MIR SINE MIR 49 237 -25 908 181 6 6 chr9 370083 370243 -117492384 + FRAM SINE Alu 1 160 -6 387 302 0 9 chr9 370271 370387 -117492240 - MER5B DNA MER1_type -58 120 6 197 95 0 24 chr9 370915 370957 -117491670 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr9 372154 372178 -117490449 + AT_rich Low_complexity Low_complexity 1 24 0 319 222 72 105 chr9 372949 373102 -117489525 + L2 LINE L2 3166 3313 0 1321 158 59 65 chr9 373127 373204 -117489423 - MER33 DNA MER1_type -2263 322 246 2037 137 0 14 chr9 373204 373496 -117489131 + AluJb SINE Alu 1 288 -24 1321 158 59 65 chr9 373496 373740 -117488887 - MER33 DNA MER1_type -2339 246 3 2347 86 0 0 chr9 374507 374797 -117487830 - AluSx SINE Alu -10 302 13 2259 56 3 25 chr9 374853 375183 -117487444 + AluY SINE Alu 2 325 0 1871 158 36 7 chr9 375187 375490 -117487137 + AluJo SINE Alu 1 312 0 269 307 70 26 chr9 375948 376062 -117486565 + MIR SINE MIR 29 147 -61 1090 221 45 5 chr9 378594 378816 -117483811 + AluJo SINE Alu 2 232 -80 581 186 57 44 chr9 379484 379650 -117482977 + MLT1H LTR MaLR 66 242 -307 570 226 17 0 chr9 379651 379766 -117482861 - MER45A DNA AcHobo -1 177 61 283 340 107 15 chr9 380077 380274 -117482353 - MIR SINE MIR -23 239 25 2281 103 0 0 chr9 380675 380965 -117481662 - AluSc SINE Alu -14 295 6 354 313 157 35 chr9 381268 381498 -117481129 + MIR SINE MIR 5 262 0 3671 162 15 5 chr9 381894 382485 -117480142 + MER50 LTR ERV1 1 597 -137 2248 90 66 0 chr9 382485 382817 -117479810 + MER4E LTR ERV1 1 354 -425 1639 143 0 8 chr9 382819 383086 -117479541 - AluSx SINE Alu 0 306 42 325 43 0 0 chr9 383086 383133 -117479494 + AluSp/q SINE Alu 253 299 -4 2363 90 0 7 chr9 383211 383511 -117479116 + AluSx SINE Alu 1 298 -14 885 125 42 0 chr9 385894 386038 -117476589 - AluSq SINE Alu -12 301 152 280 221 26 13 chr9 386213 386290 -117476337 - MLT1K LTR MaLR -2 586 509 207 271 21 42 chr9 386441 386537 -117476090 - MIR SINE MIR -101 161 68 186 365 129 0 chr9 387669 387754 -117474873 + L3 LINE CR1 1432 1527 -50 2180 136 48 8 chr9 387895 388247 -117474380 - MER47A DNA MER2_type 0 366 1 203 27 0 81 chr9 388253 388290 -117474337 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 845 107 0 0 chr9 388721 388833 -117473794 + FRAM SINE Alu 52 163 -13 358 305 94 24 chr9 389368 389581 -117473046 - MIR SINE MIR -3 259 32 2454 169 69 9 chr9 389785 390246 -117472381 + MER44D DNA MER2_type 59 602 -3 472 262 7 35 chr9 390266 390407 -117472220 - MER5B DNA MER1_type -22 156 20 287 349 0 0 chr9 390459 390568 -117472059 + MIR SINE MIR 84 192 -70 418 253 108 6 chr9 391238 391404 -117471223 + MIR SINE MIR 60 242 -20 793 261 48 102 chr9 392069 392267 -117470360 + MLT1K LTR MaLR 74 281 -307 563 173 58 14 chr9 392267 392406 -117470221 - L1MB8 LINE L1 -1 6177 6033 793 261 48 102 chr9 392406 392563 -117470064 + MLT1K LTR MaLR 281 395 -193 2357 101 10 0 chr9 392563 392870 -117469757 + AluSx SINE Alu 1 310 -2 793 261 48 102 chr9 392870 393033 -117469594 + MLT1K LTR MaLR 395 565 -23 192 125 0 0 chr9 393315 393347 -117469280 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1064 245 4 16 chr9 393353 393602 -117469025 - MIR SINE MIR -15 247 2 2223 133 23 8 chr9 394146 394498 -117468129 + MER47A DNA MER2_type 1 357 -9 277 319 81 56 chr9 395450 395610 -117467017 + MIR SINE MIR 34 197 -65 276 233 200 25 chr9 395874 395994 -117466633 + MIR3 SINE MIR 6 146 -62 262 316 34 34 chr9 396040 396157 -117466470 + L2 LINE L2 3197 3313 0 564 149 0 0 chr9 396334 396421 -117466206 + MER53 DNA DNA 3 89 -100 476 188 0 0 chr9 396354 396439 -117466188 - MER53 DNA DNA -12 177 93 * 241 271 156 0 chr9 396613 396709 -117465918 + MIR SINE MIR 152 262 0 1515 189 7 28 chr9 397192 397507 -117465120 + AluJo SINE Alu 1 309 0 1065 224 74 82 chr9 397692 397931 -117464696 - L2 LINE L2 -1 3312 3073 1854 178 0 3 chr9 397931 398229 -117464398 - AluJo SINE Alu -11 301 5 1065 224 74 82 chr9 398229 398243 -117464384 - L2 LINE L2 -240 3073 3060 2306 95 0 3 chr9 398243 398539 -117464088 - AluSc SINE Alu -14 295 1 1065 224 74 82 chr9 398539 398677 -117463950 - L2 LINE L2 -253 3060 2922 2440 130 5 19 chr9 398677 399046 -117463581 + THE1B LTR MaLR 1 364 0 1065 224 74 82 chr9 399046 399139 -117463488 - L2 LINE L2 -391 2922 2830 482 215 30 122 chr9 399359 399596 -117463031 + MIR SINE MIR 48 262 0 2448 83 3 13 chr9 399715 400028 -117462599 + AluSp SINE Alu 1 310 -3 1701 210 81 79 chr9 400052 400527 -117462100 + MLT1F LTR MaLR 35 513 -29 2248 92 31 0 chr9 400527 400819 -117461808 - AluSx SINE Alu -11 301 1 1701 210 81 79 chr9 400819 400848 -117461779 + MLT1F LTR MaLR 513 540 -2 2337 102 0 0 chr9 400859 401152 -117461475 - AluSg SINE Alu -16 294 2 835 218 107 55 chr9 401431 401697 -117460930 + MLT1F1 LTR MaLR 73 363 -204 198 0 0 0 chr9 402941 402963 -117459664 + (CA)n Simple_repeat Simple_repeat 2 23 0 513 285 77 27 chr9 403010 403231 -117459396 + MIR SINE MIR 29 260 -2 1945 143 0 11 chr9 403244 403582 -117459045 + AluSx SINE Alu 1 335 0 222 233 33 33 chr9 403730 403790 -117458837 + L2 LINE L2 3213 3272 0 25 65 0 0 chr9 403887 403933 -117458694 + AT_rich Low_complexity Low_complexity 1 46 0 195 69 0 0 chr9 404403 404432 -117458195 + (CA)n Simple_repeat Simple_repeat 1 29 0 1679 134 4 4 chr9 404581 404827 -117457800 + AluJb SINE Alu 39 284 -28 183 42 0 0 chr9 404832 404856 -117457771 + (CA)n Simple_repeat Simple_repeat 1 24 0 254 287 0 46 chr9 405080 405167 -117457460 - MIR SINE MIR -74 188 106 2872 166 23 32 chr9 405464 405868 -117456759 + L1MB7 LINE L1 5202 5600 -578 2420 74 0 3 chr9 405868 406165 -117456462 + AluY SINE Alu 1 296 -15 2872 166 23 32 chr9 406165 406397 -117456230 + L1MB7 LINE L1 5600 5833 -345 2720 157 48 0 chr9 406665 407142 -117455485 - MER34 LTR ERV1 -16 526 27 294 73 0 0 chr9 408573 408614 -117454013 + (CA)n Simple_repeat Simple_repeat 1 41 0 568 190 52 35 chr9 408703 408819 -117453808 - FLAM_C SINE Alu -15 118 1 1662 171 67 3 chr9 408995 409340 -117453287 + L1MB7 LINE L1 5818 6184 0 2075 111 20 10 chr9 409501 409798 -117452829 - AluSx SINE Alu -12 300 1 1604 162 33 46 chr9 409808 410111 -117452516 - AluJb SINE Alu -13 299 1 300 385 7 28 chr9 410230 410373 -117452254 - MIR3 SINE MIR -33 175 36 21 57 0 0 chr9 411735 411770 -117450857 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 412057 412078 -117450549 + GC_rich Low_complexity Low_complexity 1 21 0 661 198 99 28 chr9 412977 413159 -117449468 - L1MB7 LINE L1 -2 6182 5988 237 65 0 0 chr9 413500 413531 -117449096 + (TG)n Simple_repeat Simple_repeat 1 31 0 1355 130 0 10 chr9 414139 414331 -117448296 + AluJo SINE Alu 97 286 -26 923 142 7 13 chr9 414363 414381 -117448246 - AluSx SINE Alu -158 154 137 1977 113 7 18 chr9 414381 414529 -117448098 - AluSq SINE Alu -32 281 136 2380 85 0 3 chr9 414529 414823 -117447804 - AluSc SINE Alu -11 298 6 1977 113 7 18 chr9 414823 414958 -117447669 - AluSq SINE Alu -177 136 1 923 142 7 13 chr9 414958 415094 -117447533 - AluSx SINE Alu -175 137 1 2451 77 6 0 chr9 415098 415409 -117447218 - AluSp SINE Alu 0 313 1 1567 267 68 34 chr9 415416 416007 -117446620 - L1ME3A LINE L1 -44 6126 5516 2194 96 7 0 chr9 416072 416363 -117446264 - AluSc SINE Alu -12 297 5 1740 157 0 51 chr9 416773 417085 -117445542 - AluJo SINE Alu -16 296 1 629 200 45 7 chr9 418370 418525 -117444102 + MIR SINE MIR 39 199 -63 1163 248 74 76 chr9 418784 419161 -117443466 - MLT1H1 LTR MaLR -4 622 207 999 231 54 30 chr9 419165 419203 -117443424 - MLT2D LTR ERVL 0 414 378 195 42 0 0 chr9 419203 419227 -117443400 + (TG)n Simple_repeat Simple_repeat 2 25 0 999 231 54 30 chr9 419227 419521 -117443106 - MLT2D LTR ERVL -36 378 74 557 229 83 13 chr9 419560 419717 -117442910 - MLT1H1 LTR MaLR -400 190 23 331 238 38 23 chr9 419741 419878 -117442749 - HAL1b LINE L1 -199 2308 785 1933 113 0 4 chr9 420741 420997 -117441630 + AluSx SINE Alu 36 290 -22 1188 111 0 0 chr9 421073 421253 -117441374 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1856 236 158 2 chr9 421435 421974 -117440653 - L1ME3A LINE L1 -159 6011 5389 2499 69 0 7 chr9 422034 422340 -117440287 + AluY SINE Alu 1 304 -7 261 0 0 0 chr9 423971 424000 -117438627 + (CA)n Simple_repeat Simple_repeat 2 30 0 2088 112 20 3 chr9 424080 424375 -117438252 - AluSg SINE Alu -10 300 1 2137 129 3 0 chr9 424708 425010 -117437617 - AluSx SINE Alu -9 303 1 2339 97 3 0 chr9 425862 426160 -117436467 - AluSp SINE Alu -12 301 3 2021 150 0 10 chr9 427028 427335 -117435292 + AluJb SINE Alu 1 304 -8 264 271 85 42 chr9 427355 427473 -117435154 - MLT1I LTR MaLR -232 177 55 2219 112 3 3 chr9 428535 428840 -117433787 - AluSx SINE Alu -7 305 1 23 0 0 0 chr9 429198 429221 -117433406 + AT_rich Low_complexity Low_complexity 1 23 0 1268 276 173 28 chr9 429970 430997 -117431630 + L2 LINE L2 2131 3307 -6 2040 143 3 0 chr9 431488 431789 -117430838 - AluSx SINE Alu -10 302 1 2316 96 0 26 chr9 431955 432267 -117430360 - AluSx SINE Alu -8 304 1 306 0 0 0 chr9 432323 432357 -117430270 + (TG)n Simple_repeat Simple_repeat 2 35 0 1721 115 4 27 chr9 432358 432619 -117430008 - AluSx SINE Alu -23 289 35 916 141 7 0 chr9 433403 433538 -117429089 + AluJo SINE Alu 1 136 -176 259 241 0 0 chr9 433704 433758 -117428869 + MER116 DNA Mariner 5 58 -22 708 251 137 38 chr9 433760 434182 -117428445 - HAL1 LINE L1 -167 2340 1877 1083 233 149 73 chr9 434185 434255 -117428372 - HAL1 LINE L1 -719 1788 1725 1874 151 3 0 chr9 434255 434573 -117428054 - AluSq SINE Alu 0 319 1 1083 233 149 73 chr9 434573 434839 -117427788 - HAL1 LINE L1 -782 1725 1481 2119 73 59 21 chr9 434839 435128 -117427499 + AluY SINE Alu 1 300 -11 1083 233 149 73 chr9 435128 435432 -117427195 - HAL1 LINE L1 -1026 1481 1097 2307 89 3 22 chr9 435442 435755 -117426872 - AluSx SINE Alu 0 312 6 1929 157 7 0 chr9 435778 436071 -117426556 - AluJb SINE Alu -17 295 1 402 100 0 0 chr9 436207 436267 -117426360 + (CA)n Simple_repeat Simple_repeat 2 61 0 434 83 0 4 chr9 436267 436471 -117426156 - AluSc SINE Alu -17 292 1 1152 309 100 17 chr9 436486 437075 -117425552 - L1MC4a LINE L1 -1847 5961 5324 21 0 0 0 chr9 437272 437293 -117425334 + AT_rich Low_complexity Low_complexity 1 21 0 273 241 114 32 chr9 437293 437451 -117425176 - L1P LINE L1 -1090 5056 4886 1450 169 126 0 chr9 437679 437940 -117424687 + AluJb SINE Alu 1 294 -18 1690 182 31 3 chr9 438129 438420 -117424207 + AluJo SINE Alu 1 299 -13 185 0 40 0 chr9 438817 438842 -117423785 + (TG)n Simple_repeat Simple_repeat 1 26 0 962 86 0 0 chr9 439204 439332 -117423295 - AluSp/q SINE Alu -3 310 183 198 0 0 0 chr9 439337 439359 -117423268 + (T)n Simple_repeat Simple_repeat 1 22 0 1096 151 13 23 chr9 439359 439586 -117423041 - L1MB3 LINE L1 -36 6147 5917 300 297 97 0 chr9 440290 440435 -117422192 + MIR SINE MIR 72 230 -32 199 250 44 0 chr9 442396 442464 -117420163 - MIR SINE MIR -3 259 189 1003 235 12 20 chr9 442714 442969 -117419658 - MLT1D-int LTR MaLR -1118 253 1 1803 181 37 103 chr9 442971 443032 -117419595 - MLT1D LTR MaLR -4 501 438 2010 124 7 14 chr9 443032 443322 -117419305 + AluSx SINE Alu 5 292 -20 1803 181 37 103 chr9 443322 443796 -117418831 - MLT1D LTR MaLR -67 438 1 866 126 161 60 chr9 444628 444827 -117417800 + MER20 DNA MER1_type 1 219 0 197 274 36 48 chr9 445111 445195 -117417432 + MIR SINE MIR 96 178 -84 195 290 65 0 chr9 445702 445764 -117416863 + MIR SINE MIR 117 182 -80 2166 131 7 0 chr9 445847 446153 -117416474 - AluSx SINE Alu -4 308 1 7331 171 100 16 chr9 446185 446466 -117416161 - L1 LINE L1 -1446 4700 4444 1903 164 17 3 chr9 446466 446759 -117415868 - AluJo SINE Alu -15 297 1 7331 171 100 16 chr9 446759 448089 -117414538 - L1 LINE L1 -1702 4444 2954 2175 201 21 70 chr9 448108 448412 -117414215 + L1MA9 LINE L1 4695 5012 -1172 243 108 0 0 chr9 448412 448449 -117414178 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 2175 201 21 70 chr9 448449 448780 -117413847 + L1MA9 LINE L1 5012 5322 -862 2752 10 0 0 chr9 448780 449073 -117413554 + AluY SINE Alu 1 293 -18 2175 201 21 70 chr9 449073 449188 -117413439 + L1MA9 LINE L1 5322 5441 -743 932 113 8 15 chr9 449189 449322 -117413305 + AluSq/x SINE Alu 1 132 -180 3930 164 91 17 chr9 449322 450140 -117412487 + L1MA9 LINE L1 5432 6309 -3 2311 108 0 10 chr9 450246 450552 -117412075 + AluSq SINE Alu 1 303 -10 257 27 54 0 chr9 450971 451008 -117411619 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1831 151 18 7 chr9 451011 451295 -117411332 - AluJo SINE Alu -25 287 1 193 333 86 37 chr9 451794 451956 -117410671 - L2 LINE L2 -491 2823 2654 327 282 189 18 chr9 452202 452535 -117410092 - L2 LINE L2 -881 2433 2044 2299 84 3 34 chr9 452697 453019 -117409608 - AluSx SINE Alu 0 312 1 340 352 101 6 chr9 453021 453180 -117409447 - MER91A DNA MER1_type -19 177 4 1107 203 28 24 chr9 453196 453408 -117409219 + MER20 DNA MER1_type 7 219 0 24 67 0 0 chr9 455688 455733 -117406894 + AT_rich Low_complexity Low_complexity 1 45 0 895 137 0 30 chr9 455769 455900 -117406727 + AluJo SINE Alu 1 127 -185 863 191 19 0 chr9 457436 457593 -117405034 + AluJo SINE Alu 137 296 -6 546 318 68 79 chr9 458583 458738 -117403889 - L2 LINE L2 -35 3237 3082 1972 142 13 26 chr9 458738 459041 -117403586 + AluJo SINE Alu 1 299 -13 546 318 68 79 chr9 459041 459225 -117403402 - L2 LINE L2 -190 3082 2902 248 303 15 0 chr9 459227 459293 -117403334 - L2 LINE L2 -626 2688 2622 2037 116 3 14 chr9 459835 460128 -117402499 + AluJo SINE Alu 1 290 -22 316 281 174 20 chr9 460297 460493 -117402134 - MIR SINE MIR -17 245 20 22 0 0 0 chr9 460853 460875 -117401752 + AT_rich Low_complexity Low_complexity 1 22 0 698 200 14 14 chr9 460876 461021 -117401606 - MER5A DNA MER1_type 0 189 45 1965 155 63 86 chr9 461025 461421 -117401206 - MLT2B2 LTR ERVL -10 505 122 3258 107 40 0 chr9 461421 461915 -117400712 - MER75 DNA T2_type 0 514 1 1965 155 63 86 chr9 461915 462029 -117400598 - MLT2B2 LTR ERVL -393 122 7 298 180 0 0 chr9 462035 462085 -117400542 - MER5A DNA MER1_type -138 51 2 931 189 6 6 chr9 464010 464179 -117398448 + AluJb SINE Alu 139 307 -5 323 269 51 30 chr9 464191 464388 -117398239 + L1MC5 LINE L1 7713 7913 -48 1566 171 91 0 chr9 464718 464993 -117397634 + AluJb SINE Alu 1 300 -12 2140 210 25 30 chr9 465273 465797 -117396830 + MER82 DNA MER2_type 11 531 -122 698 93 21 0 chr9 465798 465895 -117396732 + U6 snRNA snRNA 1 99 -8 466 217 130 0 chr9 465917 466032 -117396595 + MER82 DNA MER2_type 524 653 0 380 346 65 34 chr9 467071 467334 -117395293 + L3 LINE CR1 278 548 -1029 540 306 210 32 chr9 467687 468125 -117394502 + L3 LINE CR1 687 1202 -375 509 247 82 58 chr9 468261 468589 -117394038 - L1ME4a LINE L1 -216 5905 5570 224 298 60 0 chr9 468619 468703 -117393924 + L3 LINE CR1 1462 1550 -27 2916 6 0 0 chr9 469011 469327 -117393300 - AluYb8 SINE Alu -2 316 1 302 333 94 19 chr9 469539 469698 -117392929 + MIR SINE MIR 90 260 -2 238 289 144 0 chr9 469761 469858 -117392769 + L2 LINE L2 3198 3308 -5 2409 62 0 10 chr9 471028 471335 -117391292 - AluY SINE Alu -7 304 1 2811 167 84 71 chr9 472371 472841 -117389786 - LTR8A LTR ERV1 0 727 243 5529 113 25 1 chr9 472841 474289 -117388338 - L1PA13 LINE L1 -11 6152 4681 2811 167 84 71 chr9 474289 474536 -117388091 - LTR8A LTR ERV1 -484 243 1 259 218 128 0 chr9 474987 475065 -117387562 - MIR SINE MIR -91 171 84 286 163 0 0 chr9 475442 475491 -117387136 - Alu SINE Alu -20 282 234 1530 175 46 15 chr9 475492 475755 -117386872 - AluJo SINE Alu -41 271 1 2518 103 83 2 chr9 476240 476636 -117385991 + MSTC LTR MaLR 1 428 0 310 278 25 102 chr9 477847 478092 -117384535 - L1ME LINE L1 -384 5737 5512 28 0 0 0 chr9 478534 478562 -117384065 + AT_rich Low_complexity Low_complexity 1 28 0 1757 161 13 26 chr9 479125 479301 -117383326 - AluJo SINE Alu -6 306 134 1858 80 0 8 chr9 479301 479539 -117383088 + AluY SINE Alu 57 292 -19 1757 161 13 26 chr9 479539 479672 -117382955 - AluJo SINE Alu -178 134 1 468 70 0 0 chr9 480239 480319 -117382308 - Alu SINE Alu 0 307 228 1994 31 0 0 chr9 480419 480648 -117381979 - AluYb8 SINE Alu -73 245 17 27 73 0 0 chr9 481543 481598 -117381029 + AT_rich Low_complexity Low_complexity 1 55 0 1724 177 7 0 chr9 531834 532117 -117330510 - AluJo SINE Alu -27 285 1 2166 184 71 113 chr9 532236 532985 -117329642 - LTR8A LTR ERV1 -24 685 1 432 277 44 22 chr9 532986 533123 -117329504 - MLT1L LTR MaLR -128 487 348 340 289 44 0 chr9 533155 533269 -117329358 - MLT1L LTR MaLR -339 276 158 1977 115 83 0 chr9 533853 534141 -117328486 - AluSx SINE Alu 0 312 1 432 275 67 13 chr9 534243 534392 -117328235 - MER5B DNA MER1_type -16 162 6 2186 108 10 3 chr9 534752 535057 -117327570 + AluSg SINE Alu 1 307 -3 879 231 16 11 chr9 535624 535806 -117326821 - MER5A DNA MER1_type -6 183 1 181 125 25 0 chr9 535963 536003 -117326624 + MER5C DNA MER1_type 234 274 -50 480 292 26 13 chr9 536052 536206 -117326421 - MLT1L LTR MaLR -113 502 347 723 194 52 0 chr9 536345 536479 -117326148 - MSTC LTR MaLR -2 426 286 1985 139 30 0 chr9 537482 537783 -117324844 - AluSx SINE Alu -2 310 1 1866 189 36 25 chr9 537859 538219 -117324408 - MLT1A1 LTR MaLR -1 364 1 1070 133 36 0 chr9 538403 538569 -117324058 - AluSg/x SINE Alu -7 305 134 2070 129 3 0 chr9 538569 538863 -117323764 - AluSx SINE Alu -17 295 1 2291 95 0 0 chr9 538866 539162 -117323465 - AluY SINE Alu -15 296 1 1022 157 8 81 chr9 539966 540214 -117322413 - L1MB8 LINE L1 0 6178 5949 752 163 39 16 chr9 541716 541845 -117320782 - FLAM_C SINE Alu 0 133 2 2228 107 0 10 chr9 541860 542169 -117320458 - AluSx SINE Alu -6 306 1 2824 103 56 15 chr9 542521 542929 -117319698 - MSTA LTR MaLR -3 425 1 2077 127 3 13 chr9 543008 543316 -117319311 + AluSx SINE Alu 4 308 -4 1903 168 3 0 chr9 543331 543628 -117318999 + AluSx SINE Alu 7 304 -8 26 50 0 0 chr9 543692 543732 -117318895 + AT_rich Low_complexity Low_complexity 1 40 0 1284 95 0 18 chr9 543766 543935 -117318692 + AluSq SINE Alu 1 166 -147 504 121 0 0 chr9 543939 544005 -117318622 + AluS SINE Alu 221 286 -24 25 53 0 18 chr9 544353 544378 -117318249 + AT_rich Low_complexity Low_complexity 1 25 -31 821 143 0 53 chr9 544378 544511 -117318116 + FLAM_C SINE Alu 2 127 -6 25 53 0 18 chr9 544511 544542 -117318085 + AT_rich Low_complexity Low_complexity 25 56 0 2018 114 9 44 chr9 544841 545158 -117317469 - AluSx SINE Alu 0 312 7 201 154 0 0 chr9 545383 545422 -117317205 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2340 93 0 10 chr9 546166 546468 -117316159 - AluSc SINE Alu -10 299 1 189 359 0 0 chr9 546741 546794 -117315833 - L2 LINE L2 -87 3185 3133 235 287 109 20 chr9 546854 546955 -117315672 + MIR SINE MIR 107 216 -46 405 206 103 48 chr9 547423 547549 -117315078 - MER94 DNA DNA 0 134 2 339 270 20 10 chr9 548618 548718 -117313909 - MER5A DNA MER1_type -80 109 9 233 298 0 48 chr9 549174 549296 -117313331 + MIR SINE MIR 63 178 -30 271 284 56 128 chr9 550190 550404 -117312223 + L1ME4a LINE L1 5529 5714 -2094 2167 120 0 7 chr9 550404 550703 -117311924 + AluSq SINE Alu 1 297 -16 271 284 56 128 chr9 550703 550808 -117311819 + L1ME4a LINE L1 5714 5825 -1983 256 181 133 133 chr9 550870 550975 -117311652 + L1ME4a LINE L1 5945 6049 -72 355 274 128 34 chr9 551317 551496 -117311131 - MIR3 SINE MIR -9 199 4 587 218 68 0 chr9 552313 552446 -117310181 - MER5A DNA MER1_type -47 142 1 317 273 24 24 chr9 552476 552579 -117310048 + MER5A DNA MER1_type 3 116 -73 312 70 0 0 chr9 552980 553023 -117309604 + (GA)n Simple_repeat Simple_repeat 1 43 0 342 158 18 0 chr9 553056 553113 -117309514 - MER5A DNA MER1_type -131 58 1 472 250 57 10 chr9 553121 553247 -117309380 - MER5B DNA MER1_type 0 178 56 2257 109 0 3 chr9 553253 553557 -117309070 + AluSq SINE Alu 1 303 -10 477 244 179 19 chr9 553650 553806 -117308821 - MER5A DNA MER1_type 0 189 9 3351 176 48 42 chr9 555046 555791 -117306836 - L1MB2 LINE L1 0 6171 5422 726 161 154 0 chr9 556072 556202 -117306425 - FAM SINE Alu -34 151 2 225 293 67 60 chr9 556425 556575 -117306052 + L2 LINE L2 2717 2867 -447 977 213 65 54 chr9 556628 556999 -117305628 - L1MB2 LINE L1 -967 5179 4805 577 291 56 67 chr9 557001 557358 -117305269 + L2 LINE L2 2961 3313 0 909 178 16 27 chr9 557489 557674 -117304953 - MER5A DNA MER1_type -1 188 6 1448 185 240 9 chr9 557674 558020 -117304607 - MSTB LTR MaLR 0 426 1 7108 63 0 0 chr9 559310 560210 -117302417 - L1PA5 LINE L1 -20 6134 5235 4755 82 16 0 chr9 560199 560831 -117301796 + L1P LINE L1 4347 4988 -1158 * 2404 84 0 0 chr9 560831 561127 -117301500 - AluSx SINE Alu -16 296 1 1057 113 33 0 chr9 562373 562524 -117300103 + THE1C LTR MaLR 4 159 -216 1996 140 26 0 chr9 562525 562867 -117299760 - L1MA4 LINE L1 -181 6301 5951 657 125 0 21 chr9 562870 562966 -117299661 - AluJo SINE Alu -177 135 42 12963 177 41 21 chr9 562966 564308 -117298319 - L1MA4 LINE L1 -521 5961 4647 1568 164 40 43 chr9 564308 564607 -117298020 + AluJo SINE Alu 1 298 -14 12963 177 41 21 chr9 564607 566145 -117296482 - L1MA4 LINE L1 -1835 4647 3011 2145 122 34 0 chr9 566145 566441 -117296186 - AluSx SINE Alu -6 306 1 12963 177 41 21 chr9 566441 566810 -117295817 - L1MA4 LINE L1 -3471 3011 2651 583 84 122 0 chr9 566801 566908 -117295719 - L1MA4 LINE L1 -4203 1125 1006 * 7096 180 31 33 chr9 566915 567141 -117295486 - L1M1 LINE L1 -4031 2297 2072 1913 164 105 3 chr9 567141 567446 -117295181 - MER1B DNA MER1_type -1 336 1 7096 180 31 33 chr9 567446 569518 -117293109 - L1M1 LINE L1 -4256 2072 27 1938 72 110 0 chr9 569773 570037 -117292590 + AluY SINE Alu 1 293 -18 1763 79 0 0 chr9 570158 570372 -117292255 + AluSg/x SINE Alu 84 297 -15 240 277 88 22 chr9 570403 570540 -117292087 + MARNA DNA Mariner 424 569 -17 590 297 52 9 chr9 570546 570758 -117291869 + MIR SINE MIR 25 245 -17 2161 125 3 6 chr9 571607 571919 -117290708 - AluSx SINE Alu -1 311 1 2122 114 7 3 chr9 573115 573414 -117289213 - AluSx SINE Alu -12 300 1 25 31 0 0 chr9 573414 573446 -117289181 + AT_rich Low_complexity Low_complexity 1 32 0 423 238 157 22 chr9 573448 573671 -117288956 - L1ME4a LINE L1 -65 6056 5804 4152 138 26 10 chr9 574075 574700 -117287927 - MER41B LTR ERV1 0 635 1 279 318 45 11 chr9 576225 576313 -117286314 + MIR SINE MIR 20 110 -98 364 253 80 49 chr9 576670 576832 -117285795 - MIR SINE MIR -1 261 95 1947 136 11 0 chr9 576864 577150 -117285477 + AluSx SINE Alu 9 297 -15 237 200 31 31 chr9 577689 577754 -117284873 + L1MC4 LINE L1 6636 6700 -1342 200 254 0 18 chr9 577757 577812 -117284815 + (TA)n Simple_repeat Simple_repeat 2 55 0 1978 124 32 3 chr9 577833 578116 -117284511 - AluSx SINE Alu -21 291 1 491 181 86 9 chr9 578971 579076 -117283551 - L2 LINE L2 -14 3299 3187 1828 150 10 26 chr9 579341 579647 -117282980 + AluJo SINE Alu 1 301 -11 219 241 17 121 chr9 579938 580054 -117282573 + MIR SINE MIR 128 231 -31 2263 110 0 0 chr9 580407 580707 -117281920 + AluSx SINE Alu 1 300 -12 508 287 66 26 chr9 580877 581149 -117281478 - L1ME4a LINE L1 -246 5875 5593 186 43 0 0 chr9 585431 585454 -117277173 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 281 263 61 30 chr9 586368 586467 -117276160 - L2 LINE L2 0 3272 3171 2141 111 24 0 chr9 586734 587023 -117275604 + AluSx SINE Alu 2 297 -15 192 77 0 0 chr9 588373 588399 -117274228 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2232 96 0 56 chr9 588415 588738 -117273889 + AluSx SINE Alu 1 305 -7 370 211 21 21 chr9 588852 588947 -117273680 + MIR SINE MIR 127 221 -41 890 155 0 14 chr9 589828 589970 -117272657 - FLAM_C SINE Alu -3 140 1 1810 163 3 17 chr9 590021 590322 -117272305 - AluJb SINE Alu -11 301 5 488 214 57 34 chr9 590925 591072 -117271555 - L1ME1 LINE L1 0 6178 6021 1598 176 54 7 chr9 591142 591420 -117271207 + AluJo SINE Alu 1 291 -21 429 237 215 0 chr9 594155 594290 -117268337 - MIR SINE MIR -87 175 12 2470 38 28 0 chr9 594420 594709 -117267918 + AluY SINE Alu 1 297 -14 180 266 53 96 chr9 594802 594990 -117267637 - L2 LINE L2 -159 3113 2934 248 240 173 58 chr9 595382 595486 -117267141 - L1MC4 LINE L1 -2 8040 7925 300 27 0 0 chr9 595486 595523 -117267104 + (TG)n Simple_repeat Simple_repeat 2 38 0 720 201 178 169 chr9 595531 596204 -117266423 - L1MC4 LINE L1 -403 7639 6961 382 309 94 34 chr9 597259 597408 -117265219 + L2 LINE L2 2684 2841 -473 458 286 105 65 chr9 597455 597780 -117264847 + L2 LINE L2 2935 3272 0 1399 149 0 5 chr9 598191 598399 -117264228 + AluJo SINE Alu 84 290 -22 1944 109 47 0 chr9 599534 599809 -117262818 - AluSp SINE Alu -21 292 5 964 172 39 39 chr9 599886 600090 -117262537 - MER20 DNA MER1_type 0 219 16 459 234 53 0 chr9 600794 600888 -117261739 + L2 LINE L2 3186 3284 -29 203 147 0 0 chr9 600905 600939 -117261688 + (GA)n Simple_repeat Simple_repeat 2 35 0 2147 114 0 13 chr9 601403 601701 -117260926 - AluSx SINE Alu -18 294 1 2258 102 0 29 chr9 602109 602423 -117260204 - AluSx SINE Alu -7 305 1 911 285 32 21 chr9 602567 602851 -117259776 - MLT1J LTR MaLR -1 510 224 1863 157 0 38 chr9 603108 603427 -117259200 + AluJo SINE Alu 1 307 -5 305 206 32 0 chr9 603447 603510 -117259117 - L1ME4a LINE L1 -56 6065 6001 1984 94 0 0 chr9 603613 603868 -117258759 + AluSx SINE Alu 1 255 -57 2084 106 0 11 chr9 604024 604306 -117258321 - AluSq SINE Alu -30 283 5 22 0 0 0 chr9 604309 604331 -117258296 + AT_rich Low_complexity Low_complexity 1 22 0 292 221 91 65 chr9 604878 605032 -117257595 + L1ME4a LINE L1 5962 6119 -2 2208 92 10 16 chr9 608020 608325 -117254302 - AluSq SINE Alu -10 303 1 970 211 18 44 chr9 608404 608632 -117253995 + L1PA16 LINE L1 5942 6163 -3 237 310 25 30 chr9 608661 608745 -117253882 - MIR SINE MIR -67 141 92 2262 110 10 3 chr9 608745 609055 -117253572 + AluSx SINE Alu 1 312 0 237 310 25 30 chr9 609055 609114 -117253513 - MIR SINE MIR -116 92 34 797 169 0 8 chr9 612367 612491 -117250136 + FLAM_A SINE Alu 1 123 -10 507 312 69 13 chr9 612508 612739 -117249888 - L2 LINE L2 -18 3295 3052 1941 135 14 0 chr9 612771 613067 -117249560 - AluSx SINE Alu -12 300 1 251 256 136 5 chr9 614594 614739 -117247888 + MIR SINE MIR 28 256 -6 979 163 25 64 chr9 615188 615391 -117247236 + AluJo SINE Alu 87 281 -31 1728 163 17 3 chr9 615419 615720 -117246907 + AluJb SINE Alu 7 311 -1 23 33 0 0 chr9 616020 616050 -117246577 + AT_rich Low_complexity Low_complexity 1 30 0 240 337 36 60 chr9 616636 616708 -117245919 + MIR3 SINE MIR 17 89 -119 1857 161 10 6 chr9 616708 617019 -117245608 - AluJb SINE Alu 0 312 1 240 337 36 60 chr9 617019 617112 -117245515 + MIR3 SINE MIR 89 178 -30 2122 99 0 29 chr9 617363 617676 -117244951 - AluSg SINE Alu -6 304 1 23 0 0 0 chr9 618000 618023 -117244604 + AT_rich Low_complexity Low_complexity 1 23 0 625 125 0 118 chr9 618153 618289 -117244338 - FRAM SINE Alu -12 164 45 1339 193 7 43 chr9 618760 619065 -117243562 - AluJo SINE Alu -18 294 1 635 190 22 51 chr9 619067 619204 -117243423 - AluJo/FLAM SINE Alu -169 133 1 365 134 15 30 chr9 619411 619478 -117243149 - MER5B DNA MER1_type 0 178 113 3033 169 74 47 chr9 619478 620411 -117242216 + LTR8-int LTR ERV1 5043 6257 -6 1029 186 142 9 chr9 620421 620647 -117241980 + LTR8 LTR ERV1 1 256 -435 23 0 0 0 chr9 620662 620685 -117241942 + AT_rich Low_complexity Low_complexity 1 23 0 297 125 0 0 chr9 620723 620779 -117241848 + (TC)n Simple_repeat Simple_repeat 1 56 0 234 155 14 127 chr9 620803 620874 -117241753 + MER5B DNA MER1_type 116 178 0 190 260 20 0 chr9 621204 621254 -117241373 - MIR SINE MIR -11 251 201 602 232 49 32 chr9 621695 621880 -117240747 + L1ME2 LINE L1 5943 6130 -34 797 151 8 16 chr9 621909 622035 -117240592 + FRAM SINE Alu 21 145 -31 668 226 82 62 chr9 622109 622224 -117240403 + L1MC5 LINE L1 7489 7600 -361 1450 180 10 37 chr9 622224 622519 -117240108 + AluJb SINE Alu 5 291 -21 668 226 82 62 chr9 622519 622806 -117239821 + L1MC5 LINE L1 7600 7899 -62 2109 98 0 14 chr9 622925 623222 -117239405 + AluSx SINE Alu 1 293 -19 264 230 148 82 chr9 623570 623679 -117238948 + MIR3 SINE MIR 37 158 -50 1706 106 0 16 chr9 623679 623925 -117238702 + AluSx SINE Alu 60 301 -11 264 230 148 82 chr9 623925 623950 -117238677 + MIR3 SINE MIR 158 180 -28 301 319 35 9 chr9 624046 624159 -117238468 + MER5A DNA MER1_type 50 165 -24 2005 119 3 0 chr9 624766 625059 -117237568 + AluSx SINE Alu 1 294 -18 1864 136 3 17 chr9 625087 625389 -117237238 + AluSq SINE Alu 1 298 -15 316 319 176 32 chr9 625439 625655 -117236972 - L1ME4a LINE L1 -246 5875 5629 2064 100 21 3 chr9 625732 626023 -117236604 - AluSx SINE Alu -14 298 3 429 20 0 0 chr9 626090 626140 -117236487 + (TG)n Simple_repeat Simple_repeat 1 50 0 241 284 0 0 chr9 626157 626231 -117236396 - L1ME LINE L1 -205 5916 5843 5227 115 29 62 chr9 626258 626591 -117236036 + MER4D LTR ERV1 1 344 -559 1994 107 9 28 chr9 626591 626908 -117235719 - AluSx SINE Alu -1 311 1 5227 115 29 62 chr9 626908 627508 -117235119 + MER4D LTR ERV1 344 903 0 2059 112 0 3 chr9 628819 629106 -117233521 + AluSx SINE Alu 1 286 -26 1132 183 100 0 chr9 631951 632180 -117230447 + AluJo SINE Alu 40 291 -21 26 0 0 0 chr9 632205 632231 -117230396 + AT_rich Low_complexity Low_complexity 1 26 0 1874 135 26 13 chr9 632240 632543 -117230084 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr9 632768 632790 -117229837 + AT_rich Low_complexity Low_complexity 1 22 0 2105 101 0 0 chr9 632799 633085 -117229542 + AluSx SINE Alu 7 292 -20 991 163 180 85 chr9 633980 634121 -117228506 + MER2 DNA MER2_type 36 162 -183 1824 145 0 3 chr9 634121 634411 -117228216 + AluSx SINE Alu 1 289 -23 1865 74 0 8 chr9 634411 634668 -117227959 - AluY SINE Alu -55 256 1 991 163 180 85 chr9 634668 634808 -117227819 + MER2 DNA MER2_type 161 345 0 1615 142 42 21 chr9 634833 635121 -117227506 + AluJb SINE Alu 3 296 -16 500 266 97 7 chr9 636307 636461 -117226166 - MIR SINE MIR -75 187 20 194 133 67 22 chr9 637994 638039 -117224588 + L2 LINE L2 2677 2723 -591 1498 143 23 37 chr9 639735 639897 -117222730 - AluSx SINE Alu -16 296 138 2235 92 0 0 chr9 639897 640191 -117222436 - AluY SINE Alu -12 299 6 1498 143 23 37 chr9 640191 640328 -117222299 - AluSx SINE Alu -174 138 1 234 196 78 0 chr9 641764 641815 -117220812 - L1PA15-16 LINE L1 -6208 641 587 1628 151 36 4 chr9 641992 642271 -117220356 + AluJo SINE Alu 1 288 -24 2307 92 0 3 chr9 644869 645172 -117217455 - AluY SINE Alu -9 302 1 221 115 0 19 chr9 645723 645775 -117216852 + (GA)n Simple_repeat Simple_repeat 1 51 0 1635 186 20 0 chr9 646271 646567 -117216060 + AluJo SINE Alu 5 306 -6 713 180 0 43 chr9 646716 646855 -117215772 + FLAM_A SINE Alu 1 133 0 1419 129 126 16 chr9 647289 647567 -117215060 + AluSg SINE Alu 1 306 0 203 222 0 22 chr9 647577 647622 -117215005 - MER5A DNA MER1_type -108 81 38 646 226 97 0 chr9 649227 649422 -117213205 + L1ME3A LINE L1 5944 6157 -13 652 307 68 43 chr9 649616 650013 -117212614 + MLT1I LTR MaLR 3 409 0 664 181 22 14 chr9 650098 650236 -117212391 - MER105 DNA DNA -28 176 38 1065 190 16 0 chr9 650305 650489 -117212138 - MER5A DNA MER1_type -2 187 1 2273 100 0 0 chr9 650891 651192 -117211435 + AluSq SINE Alu 1 301 -12 2050 129 0 0 chr9 651781 652075 -117210552 - AluSx SINE Alu -17 295 2 1982 97 0 33 chr9 652296 652596 -117210031 + AluSx SINE Alu 1 290 -22 595 350 45 8 chr9 653151 653397 -117209230 - MLT1H LTR MaLR -273 276 22 1986 125 7 0 chr9 653798 654087 -117208540 - AluSx SINE Alu -21 291 1 2182 97 0 25 chr9 654894 655214 -117207413 - AluSx SINE Alu 0 312 1 2114 99 3 3 chr9 655488 655780 -117206847 - AluSg SINE Alu -15 295 4 197 273 13 39 chr9 655798 655875 -117206752 + L3 LINE CR1 1245 1319 -258 1977 122 7 7 chr9 656196 656499 -117206128 - AluSx SINE Alu -9 303 1 246 32 0 0 chr9 656629 656660 -117205967 + (TG)n Simple_repeat Simple_repeat 2 32 0 1013 177 74 5 chr9 656694 656897 -117205730 - AluJb SINE Alu -13 299 83 2061 189 16 2 chr9 657006 657430 -117205197 - L1MB4 LINE L1 0 6180 5751 1583 141 82 4 chr9 657445 657714 -117204913 - AluJb SINE Alu -22 290 1 665 254 78 20 chr9 657899 658143 -117204484 - MIR SINE MIR -3 259 2 1370 230 60 7 chr9 659262 659706 -117202921 - MLT2B1 LTR ERVL 0 520 1 323 305 29 0 chr9 660569 660674 -117201953 + L2 LINE L2 2560 2667 -647 2428 81 0 0 chr9 661563 661871 -117200756 + AluY SINE Alu 1 308 -3 1771 140 0 11 chr9 661913 662184 -117200443 + AluSx SINE Alu 1 268 -44 26 98 0 0 chr9 662215 662297 -117200330 + AT_rich Low_complexity Low_complexity 1 82 0 452 303 26 7 chr9 662761 662913 -117199714 + MIR SINE MIR 21 175 -87 758 136 0 0 chr9 663004 663114 -117199513 + AluSq/x SINE Alu 2 111 -202 4168 125 86 26 chr9 663116 663850 -117198777 + MER4E LTR ERV1 2 779 0 690 123 38 0 chr9 663850 663956 -117198671 + MER50 LTR ERV1 595 704 -30 30328 114 20 56 chr9 664880 671284 -117191343 + L1PA8 LINE L1 12 6172 0 2205 118 26 3 chr9 671441 671746 -117190881 + AluSx SINE Alu 1 312 0 261 0 0 0 chr9 671749 671778 -117190849 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1823 109 13 63 chr9 671935 672237 -117190390 - AluSx SINE Alu 0 312 26 1775 135 60 0 chr9 672297 672564 -117190063 + AluSq SINE Alu 21 303 -10 1121 146 0 0 chr9 672732 672896 -117189731 - AluSq SINE Alu -15 298 135 2140 131 0 0 chr9 672898 673188 -117189439 - AluSx SINE Alu -22 290 1 2036 132 7 0 chr9 673260 673549 -117189078 + AluSp SINE Alu 9 299 -14 264 30 0 0 chr9 673551 673584 -117189043 + (TA)n Simple_repeat Simple_repeat 1 33 0 656 209 67 53 chr9 673597 673757 -117188870 + MLT1E LTR MaLR 1 166 -427 1726 148 36 43 chr9 673757 674061 -117188566 - AluSx SINE Alu -10 302 1 656 209 67 53 chr9 674061 674125 -117188502 + MLT1E LTR MaLR 166 228 -365 1341 290 52 44 chr9 674148 674690 -117187937 + L1MA6 LINE L1 160 705 -6144 240 35 0 0 chr9 675016 675045 -117187582 + (CA)n Simple_repeat Simple_repeat 1 29 0 4016 219 57 26 chr9 675064 675704 -117186923 + L1MA6 LINE L1 1383 2002 -4847 1711 184 0 0 chr9 675704 675971 -117186656 + AluJb SINE Alu 1 267 -45 4016 219 57 26 chr9 675971 676161 -117186466 + L1MA6 LINE L1 2002 2185 -4664 1451 197 49 21 chr9 676161 676445 -117186182 + AluJo SINE Alu 1 292 -20 4016 219 57 26 chr9 676445 676752 -117185875 + L1MA6 LINE L1 2185 2556 -4293 12058 169 52 26 chr9 676762 678145 -117184482 + L1MA6 LINE L1 3434 4780 -2222 8892 50 8 2 chr9 678145 679208 -117183419 + MER11C LTR ERVK 1 1070 -1 12058 169 52 26 chr9 679208 679846 -117182781 + L1MA6 LINE L1 4780 5400 -1602 2196 124 0 7 chr9 679846 680144 -117182483 - AluSx SINE Alu -12 300 5 12058 169 52 26 chr9 680144 680588 -117182039 + L1MA6 LINE L1 5400 5831 -1171 2158 102 0 11 chr9 680588 680872 -117181755 - AluSx SINE Alu -31 281 1 12058 169 52 26 chr9 680872 681764 -117180863 + L1MA6 LINE L1 5831 7002 0 1316 150 184 83 chr9 681775 682182 -117180445 - LTR47A LTR ERVL 0 452 5 1155 229 62 13 chr9 682291 682597 -117180030 - L1MA6 LINE L1 -13 6287 5967 3375 168 66 138 chr9 682683 683066 -117179561 - MER21A LTR ERV1 -16 915 506 2347 102 0 7 chr9 683066 683371 -117179256 + AluSx SINE Alu 1 303 -9 3375 168 66 138 chr9 683371 683958 -117178669 - MER21A LTR ERV1 -425 506 15 1428 248 18 33 chr9 684541 684868 -117177759 + MLT1I LTR MaLR 9 330 -79 1236 220 40 24 chr9 684868 685164 -117177463 + AluJb SINE Alu 1 301 -11 1428 248 18 33 chr9 685164 685235 -117177392 + MLT1I LTR MaLR 330 401 -8 1596 174 32 76 chr9 685541 685765 -117176862 - MLT1B LTR MaLR 0 390 191 2122 109 24 0 chr9 685765 686058 -117176569 - AluSq SINE Alu -13 300 1 1596 174 32 76 chr9 686058 686241 -117176386 - MLT1B LTR MaLR -199 191 1 347 303 103 0 chr9 686843 686998 -117175629 + MIR SINE MIR 89 259 -3 2012 136 18 0 chr9 687443 687729 -117174898 + AluSc SINE Alu 1 291 -18 1921 172 13 0 chr9 687737 688067 -117174560 + AluJb SINE Alu 1 334 0 1545 158 71 128 chr9 688330 688694 -117173933 - MLT1C LTR MaLR -2 465 135 1850 137 34 10 chr9 688694 688987 -117173640 - AluJb SINE Alu -12 300 1 1545 158 71 128 chr9 688987 689115 -117173512 - MLT1C LTR MaLR -332 135 1 372 252 72 14 chr9 689228 689367 -117173260 - MIR SINE MIR -18 244 98 2181 98 3 20 chr9 689577 689874 -117172753 - AluSx SINE Alu -20 292 1 2300 84 3 0 chr9 690303 690589 -117172038 - AluSg SINE Alu -23 287 1 216 320 68 10 chr9 690793 691007 -117171620 - L2 LINE L2 -74 3198 3002 1512 147 9 0 chr9 691742 691960 -117170667 - AluJb SINE Alu -19 293 74 279 203 16 31 chr9 691960 692015 -117170612 + LTR67 LTR ERVL 494 549 -8 371 232 11 17 chr9 692120 692213 -117170414 - AluS SINE Alu -228 75 1 1140 166 5 0 chr9 692480 692667 -117169960 - MER5A DNA MER1_type 0 189 2 521 219 80 22 chr9 692712 692849 -117169778 + LTR67 LTR ERVL 405 549 -8 2313 104 0 16 chr9 693303 693619 -117169008 - AluSq SINE Alu -2 311 1 1872 109 106 0 chr9 694015 694280 -117168347 - AluSg SINE Alu -17 293 1 373 202 326 8 chr9 694443 694572 -117168055 + MER5B DNA MER1_type 5 174 -4 300 207 49 0 chr9 694580 694672 -117167955 - MIR SINE MIR -73 135 32 1163 186 0 69 chr9 694992 695176 -117167451 - AluJo SINE Alu -23 289 94 2393 88 0 0 chr9 695176 695471 -117167156 - AluSg SINE Alu -15 295 1 297 0 0 0 chr9 695471 695504 -117167123 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1163 186 0 69 chr9 695504 695565 -117167062 - AluJo SINE Alu -216 96 60 1900 136 11 7 chr9 695694 695981 -117166646 + AluSg SINE Alu 1 288 -22 2603 51 0 10 chr9 696016 696330 -117166297 - AluY SINE Alu 0 311 1 428 239 162 9 chr9 696391 696568 -117166059 - L1MC4a LINE L1 -219 5902 5708 2259 112 3 0 chr9 696571 696875 -117165752 + AluSx SINE Alu 1 305 -7 2558 48 0 0 chr9 697315 697610 -117165017 - AluY SINE Alu -16 295 1 338 266 70 8 chr9 697661 697789 -117164838 + L1ME4a LINE L1 5548 5683 -438 546 309 85 0 chr9 697789 698012 -117164615 + MIR SINE MIR 20 261 -1 21 36 0 0 chr9 698130 698158 -117164469 + AT_rich Low_complexity Low_complexity 1 28 0 1857 159 29 35 chr9 698236 698538 -117164089 - MER2 DNA MER2_type 0 344 43 2261 98 0 16 chr9 698538 698843 -117163784 + AluSx SINE Alu 1 300 -12 1857 159 29 35 chr9 698843 698886 -117163741 - MER2 DNA MER2_type -301 43 1 1753 144 4 4 chr9 699357 699621 -117163006 + AluSx SINE Alu 39 302 -10 1560 156 64 14 chr9 701712 701995 -117160632 - MLT1C LTR MaLR 0 467 171 2226 113 0 10 chr9 702010 702321 -117160306 - AluSx SINE Alu -4 308 1 283 254 56 16 chr9 702370 702496 -117160131 + L1ME4a LINE L1 5758 5888 -233 552 320 135 24 chr9 702571 703030 -117159597 + L2 LINE L2 2804 3313 0 2322 87 10 3 chr9 703040 703351 -117159276 + AluSq SINE Alu 1 313 0 1008 156 12 0 chr9 704111 704271 -117158356 - AluSg/x SINE Alu -8 304 143 434 154 121 0 chr9 704380 704457 -117158170 + MLT1A1 LTR MaLR 1 92 -273 2255 109 0 7 chr9 704457 704759 -117157868 + AluSq SINE Alu 1 300 -13 434 154 121 0 chr9 704759 704772 -117157855 + MLT1A1 LTR MaLR 92 102 -263 367 127 18 0 chr9 704805 704860 -117157767 + MSTD LTR MaLR 341 396 0 217 173 19 0 chr9 705049 705101 -117157526 + A-rich Low_complexity Low_complexity 6 58 0 618 221 128 0 chr9 705540 705735 -117156892 - MIR SINE MIR -35 227 8 1371 275 57 15 chr9 705838 706310 -117156317 + LTR33 LTR ERVL 24 515 -6 446 252 122 0 chr9 706653 706800 -117155827 + MIR SINE MIR 49 213 -49 1463 102 13 35 chr9 706807 707033 -117155594 + AluSc SINE Alu 81 301 -8 991 9 58 21 chr9 707109 707551 -117155076 + (TG)n Simple_repeat Simple_repeat 1 458 0 608 198 27 0 chr9 707591 707702 -117154925 + MER106B DNA MER1_type 42 155 -904 21 36 0 0 chr9 707705 707733 -117154894 + AT_rich Low_complexity Low_complexity 1 28 0 362 179 0 0 chr9 707812 707868 -117154759 + MLT1A2 LTR MaLR 1 56 -318 2580 59 0 0 chr9 707869 708172 -117154455 + AluSg SINE Alu 1 303 -7 803 213 63 19 chr9 708172 708379 -117154248 + MLT1A2 LTR MaLR 159 374 0 1629 170 21 24 chr9 708472 708760 -117153867 + AluJo SINE Alu 11 297 -15 1987 143 3 19 chr9 709307 709614 -117153013 - AluSx SINE Alu -10 302 1 254 323 104 53 chr9 709833 710170 -117152457 + L2 LINE L2 2945 3298 -15 198 103 0 0 chr9 710286 710315 -117152312 + (A)n Simple_repeat Simple_repeat 1 29 0 1829 284 59 38 chr9 710817 711525 -117151102 + L1MEd LINE L1 1 723 -5396 2189 127 0 19 chr9 711617 711933 -117150694 + AluSx SINE Alu 1 310 -2 516 130 0 0 chr9 711858 711935 -117150692 + Alu SINE Alu 236 312 0 2188 119 3 3 chr9 712065 712375 -117150252 + AluSx SINE Alu 1 310 -2 478 291 179 14 chr9 712533 712756 -117149871 + MIR SINE MIR 3 262 0 1517 185 35 3 chr9 712888 713175 -117149452 + AluJo SINE Alu 2 297 -15 2296 183 71 54 chr9 713235 713381 -117149246 + L1MD1 LINE L1 5061 5203 -1039 1675 167 0 26 chr9 713381 713687 -117148940 + AluJo SINE Alu 1 298 -14 2296 183 71 54 chr9 713687 713766 -117148861 + L1MD1 LINE L1 5203 5279 -963 2082 121 0 16 chr9 713766 714079 -117148548 - AluSx SINE Alu -4 308 1 1876 132 10 3 chr9 714081 714370 -117148257 - AluJb SINE Alu -9 303 13 2296 183 71 54 chr9 714370 714676 -117147951 + L1MD1 LINE L1 5279 5578 -664 2236 109 0 0 chr9 714676 714989 -117147638 - AluSq SINE Alu 0 313 1 2296 183 71 54 chr9 714989 715420 -117147207 + L1MD1 LINE L1 5578 6070 -172 1158 243 28 12 chr9 715210 715535 -117147092 + L1MB8 LINE L1 5843 6172 -6 * 1505 178 7 17 chr9 715551 715838 -117146789 + AluJo SINE Alu 11 294 -18 2185 98 0 0 chr9 715838 716124 -117146503 + AluSg SINE Alu 1 286 -24 2187 76 26 7 chr9 716138 716429 -117146198 + AluSg1 SINE Alu 1 300 -9 270 115 0 0 chr9 716429 716481 -117146146 + (TA)n Simple_repeat Simple_repeat 2 53 0 2187 76 26 7 chr9 716481 716492 -117146135 + AluSg1 SINE Alu 300 309 0 263 286 118 17 chr9 716827 716946 -117145681 - L2 LINE L2 -21 3251 3121 482 250 24 18 chr9 717744 717889 -117144738 + L1ME3 LINE L1 5998 6146 -16 1848 116 61 0 chr9 717889 718166 -117144461 - AluSx SINE Alu -18 294 1 482 250 24 18 chr9 718166 718184 -117144443 + L1ME3 LINE L1 6146 6162 0 644 130 43 9 chr9 718195 718310 -117144317 + L1MB3 LINE L1 6063 6181 -2 910 174 6 6 chr9 718368 718529 -117144098 + AluJb SINE Alu 1 161 -151 207 0 0 0 chr9 718554 718577 -117144050 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 503 300 62 12 chr9 718966 719126 -117143501 - MIR3 SINE MIR -9 199 32 1915 148 7 0 chr9 719223 719533 -117143094 - AluJo SINE Alu 0 312 1 2252 69 0 0 chr9 719568 719881 -117142746 - AluY SINE Alu 0 313 1 1492 191 68 3 chr9 719886 720195 -117142432 - L1MB8 LINE L1 -11 6167 5839 273 228 0 0 chr9 720248 720327 -117142300 + GA-rich Low_complexity Low_complexity 3 81 0 335 307 114 55 chr9 720383 720585 -117142042 - MIR SINE MIR -29 233 20 628 243 80 57 chr9 720747 721048 -117141579 + L1MC4a LINE L1 5697 6004 -1804 1996 136 3 0 chr9 721058 721366 -117141261 + AluSx SINE Alu 1 309 -3 194 264 28 42 chr9 721366 721438 -117141189 - L2 LINE L2 -20 3252 3182 1040 146 6 0 chr9 721475 721640 -117140987 - FRAM SINE Alu -15 161 1 252 161 0 61 chr9 722015 722209 -117140418 + AluJo SINE Alu 38 300 -2 436 280 84 0 chr9 722214 722357 -117140270 + MIR SINE MIR 47 201 -61 1778 174 7 0 chr9 722387 722691 -117139936 + AluJb SINE Alu 1 306 -6 953 197 55 24 chr9 723239 723493 -117139134 - MER58B DNA MER1_type 0 341 80 1334 126 37 5 chr9 723494 723709 -117138918 + AluJb SINE Alu 79 300 -12 1319 191 20 20 chr9 723712 724016 -117138611 + AluJb SINE Alu 1 304 -8 754 166 45 85 chr9 724128 724351 -117138276 - AluJo SINE Alu -11 301 88 2124 95 10 3 chr9 724351 724657 -117137970 - AluSx SINE Alu -4 308 1 449 140 40 30 chr9 724716 724816 -117137811 + MER53 DNA DNA 1 101 -88 245 363 0 7 chr9 724878 725024 -117137603 + C-rich Low_complexity Low_complexity 2 146 0 1471 132 8 31 chr9 726000 726257 -117136370 + AluSx SINE Alu 32 282 -30 2208 97 0 0 chr9 726899 727198 -117135429 + AluSc SINE Alu 1 299 -10 2094 117 0 0 chr9 727206 727505 -117135122 + AluSx SINE Alu 1 299 -13 2015 117 0 3 chr9 727540 727845 -117134782 + AluSx SINE Alu 3 306 0 1277 156 5 9 chr9 727862 728086 -117134541 + AluJb SINE Alu 1 223 -89 1795 57 0 4 chr9 728088 728315 -117134312 - AluY SINE Alu -85 226 1 1898 121 47 13 chr9 728372 728537 -117134090 - AluSx SINE Alu 0 312 131 1911 101 21 21 chr9 728537 728849 -117133778 - AluSx SINE Alu 0 312 2 1898 121 47 13 chr9 728849 728981 -117133646 - AluSx SINE Alu -181 131 5 2059 93 4 0 chr9 729143 729459 -117133168 + AluSg SINE Alu 1 317 0 2240 80 7 7 chr9 729463 729764 -117132863 + AluSc SINE Alu 1 301 -8 2417 37 0 7 chr9 729952 730247 -117132380 + AluY SINE Alu 6 298 -13 2162 96 6 10 chr9 730715 731028 -117131599 + AluSp SINE Alu 1 312 -1 794 313 64 0 chr9 731051 731284 -117131343 - MIR SINE MIR 0 262 15 331 262 121 56 chr9 731683 731929 -117130698 + L2 LINE L2 2735 2998 -274 763 214 26 0 chr9 732431 732585 -117130042 - MIR SINE MIR -26 236 79 1693 97 0 4 chr9 732699 732937 -117129690 + AluSq SINE Alu 1 237 -76 834 141 0 15 chr9 732937 733066 -117129561 + AluSg/x SINE Alu 168 294 -18 3210 176 71 69 chr9 733238 733379 -117129248 - L1MB7 LINE L1 -5 6179 6040 309 26 0 0 chr9 733379 733417 -117129210 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2054 110 7 3 chr9 733420 733711 -117128916 - AluSc SINE Alu -17 292 1 1052 156 0 0 chr9 733714 733874 -117128753 - FRAM SINE Alu -6 160 1 3210 176 71 69 chr9 733874 734198 -117128429 - L1MB7 LINE L1 -146 6038 5716 2025 92 14 17 chr9 734198 734334 -117128293 + AluSq SINE Alu 1 136 -177 2244 94 3 0 chr9 734334 734633 -117127994 + AluSp SINE Alu 1 300 -13 2025 92 14 17 chr9 734633 734790 -117127837 + AluSq SINE Alu 136 293 -20 3210 176 71 69 chr9 734790 735111 -117127516 - L1MB7 LINE L1 -468 5716 5397 1712 159 28 0 chr9 735111 735400 -117127227 - AluJo SINE Alu -15 297 1 3210 176 71 69 chr9 735400 735561 -117127066 - L1MB7 LINE L1 -787 5397 5238 2090 125 3 0 chr9 735561 735873 -117126754 - AluSq SINE Alu 0 313 1 3210 176 71 69 chr9 735873 735964 -117126663 - L1MB7 LINE L1 -946 5238 5117 1918 136 3 3 chr9 735964 736266 -117126361 - AluSx SINE Alu -10 302 1 3210 176 71 69 chr9 736266 736311 -117126316 - L1MB7 LINE L1 -1067 5117 5074 2094 113 3 0 chr9 736511 736803 -117125824 - AluSx SINE Alu -17 295 3 2090 112 0 3 chr9 736805 737100 -117125527 - AluSg SINE Alu -16 294 1 2076 103 3 7 chr9 737102 737402 -117125225 - AluSq SINE Alu -14 299 1 1523 207 0 7 chr9 737713 737851 -117124776 + AluJo SINE Alu 1 138 -174 2300 74 0 0 chr9 737851 738147 -117124480 + AluY SINE Alu 1 296 -15 1523 207 0 7 chr9 738147 738312 -117124315 + AluJo SINE Alu 138 302 -10 396 0 0 0 chr9 739126 739170 -117123457 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 139 93 0 chr9 739171 739257 -117123370 - L1ME2 LINE L1 -12 6152 6059 2365 69 0 3 chr9 740632 740936 -117121691 - AluSx SINE Alu -8 304 2 27 29 0 0 chr9 742952 742986 -117119641 + AT_rich Low_complexity Low_complexity 1 34 0 2355 80 0 6 chr9 743109 743423 -117119204 - AluSx SINE Alu 0 312 1 2006 124 7 0 chr9 743610 743909 -117118718 - AluSx SINE Alu -11 301 1 2041 113 7 10 chr9 744425 744734 -117117893 - AluSx SINE Alu -4 308 1 885 194 0 0 chr9 744981 745146 -117117481 - FRAM SINE Alu -11 165 1 332 224 116 68 chr9 745177 745324 -117117303 + MER5A DNA MER1_type 9 162 -27 183 237 17 51 chr9 745791 745850 -117116777 - MIR3 SINE MIR -18 190 134 795 234 66 5 chr9 746191 746388 -117116239 - MER3 DNA MER1_type 0 209 1 357 264 28 38 chr9 746619 746725 -117115902 + MIR3 SINE MIR 69 173 -35 2210 119 0 3 chr9 746945 747256 -117115371 - AluSx SINE Alu -2 310 1 493 289 76 25 chr9 747448 747645 -117114982 - MIR SINE MIR -54 208 2 2063 93 21 3 chr9 748231 748520 -117114107 - AluSp SINE Alu -19 294 1 2315 104 0 0 chr9 749148 749457 -117113170 + AluSx SINE Alu 1 309 -3 2082 128 3 0 chr9 749635 749939 -117112688 - AluSx SINE Alu -7 305 1 2051 100 17 0 chr9 750339 750638 -117111989 - AluSx SINE Alu -8 304 1 1681 153 23 17 chr9 751488 751788 -117110839 - L1MC1 LINE L1 -16 6317 6016 33 25 0 0 chr9 751837 751877 -117110750 + AT_rich Low_complexity Low_complexity 1 40 0 1454 140 21 103 chr9 751877 752206 -117110421 - AluYb8 SINE Alu -16 302 1 1484 154 3 55 chr9 752207 752499 -117110128 - AluJo SINE Alu -22 290 14 964 144 0 20 chr9 752514 752667 -117109960 - FRAM SINE Alu -11 165 16 1357 141 14 0 chr9 752691 752904 -117109723 - AluSg/x SINE Alu -15 295 80 2354 58 0 7 chr9 753174 753468 -117109159 - AluY SINE Alu -19 292 1 295 297 123 22 chr9 753755 753893 -117108734 + L2 LINE L2 3162 3313 0 1633 159 10 7 chr9 754025 754320 -117108307 - AluJo SINE Alu -16 296 1 2352 72 0 0 chr9 754326 754616 -117108011 - AluSx SINE Alu -20 292 3 2608 196 77 15 chr9 754666 755273 -117107354 - L1MB7 LINE L1 -20 6164 5520 1995 110 28 0 chr9 755434 755716 -117106911 + AluSx SINE Alu 1 290 -22 190 116 47 0 chr9 755716 755759 -117106868 + (TA)n Simple_repeat Simple_repeat 1 45 0 4109 31 0 0 chr9 756027 756506 -117106121 - L1PA4 LINE L1 0 6155 5677 23 33 0 0 chr9 756914 756944 -117105683 + AT_rich Low_complexity Low_complexity 1 30 0 963 147 47 47 chr9 756947 756993 -117105634 - L1MB4 LINE L1 0 6180 6135 2029 90 75 0 chr9 756993 757272 -117105355 + AluSq SINE Alu 1 300 -13 219 36 0 0 chr9 757272 757300 -117105327 + (TA)n Simple_repeat Simple_repeat 2 29 0 963 147 47 47 chr9 757300 757443 -117105184 - L1MB4 LINE L1 -43 6137 5990 2305 77 0 13 chr9 758420 758732 -117103895 + AluSx SINE Alu 5 312 0 1031 248 74 60 chr9 758889 759321 -117103306 - L2 LINE L2 -1 3312 2875 9401 57 12 81 chr9 759457 760904 -117101723 - SVA Other Other 0 1386 40 240 35 0 0 chr9 760913 760942 -117101685 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 1900 221 72 70 chr9 761242 761436 -117101191 + MLT1E2 LTR MaLR 2 194 -432 1573 181 7 16 chr9 761436 761739 -117100888 + AluJo SINE Alu 3 302 -10 1900 221 72 70 chr9 761739 762168 -117100459 + MLT1E2 LTR MaLR 194 626 0 508 190 60 9 chr9 762172 762288 -117100339 - L1MB7 LINE L1 -2374 5434 5313 286 313 55 16 chr9 762373 762501 -117100126 - L2 LINE L2 -1099 2215 2083 1891 119 51 0 chr9 762599 762894 -117099733 - AluSx SINE Alu -2 310 1 2443 67 0 7 chr9 762901 763198 -117099429 - AluY SINE Alu -13 298 4 271 285 97 24 chr9 763653 763802 -117098825 + MIR SINE MIR 18 185 -64 2396 98 0 0 chr9 764283 764588 -117098039 + AluSx SINE Alu 1 305 -7 468 295 109 19 chr9 765876 766086 -117096541 - MIR SINE MIR -12 250 22 2007 125 17 3 chr9 766390 766679 -117095948 - AluJb SINE Alu -19 293 1 1893 175 0 3 chr9 767129 767438 -117095189 + AluJb SINE Alu 1 308 -4 2299 91 0 3 chr9 768518 768830 -117093797 + AluSq SINE Alu 2 312 0 1673 163 31 17 chr9 769111 769405 -117093222 - AluJb SINE Alu -10 302 5 1536 157 48 11 chr9 769459 769727 -117092900 - AluJb SINE Alu -34 278 1 2327 57 3 30 chr9 769740 770041 -117092586 - AluY SINE Alu -18 293 1 1200 45 0 0 chr9 770041 770175 -117092452 - AluY SINE Alu -177 134 1 2310 199 127 16 chr9 770420 770472 -117092155 - L1MB7 LINE L1 0 6184 6139 2310 79 0 3 chr9 770472 770762 -117091865 - AluSg SINE Alu -21 289 1 2310 199 127 16 chr9 770762 771291 -117091336 - L1MB7 LINE L1 -45 6139 5538 1049 157 47 5 chr9 771314 771505 -117091122 - MLT2B3 LTR ERVL -355 199 1 781 178 16 26 chr9 771505 771696 -117090931 - L1MB7 LINE L1 -717 5467 5279 2283 81 0 42 chr9 771712 772020 -117090607 - AluSq SINE Alu -18 295 1 196 289 125 20 chr9 772319 772471 -117090156 + L3b LINE CR1 1179 1346 -237 2441 81 0 10 chr9 773203 773511 -117089116 - AluY SINE Alu -6 305 1 250 140 53 0 chr9 774164 774221 -117088406 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1696 177 7 10 chr9 774930 775229 -117087398 - AluJo SINE Alu -12 300 3 293 203 76 0 chr9 777151 777230 -117085397 - MIR SINE MIR 0 262 178 5078 197 63 79 chr9 777576 778846 -117083781 - Charlie1a DNA MER1_type -1311 1450 206 2340 110 7 0 chr9 778846 779155 -117083472 + AluSx SINE Alu 1 311 -1 5078 197 63 79 chr9 779155 779358 -117083269 - Charlie1a DNA MER1_type -2555 206 1 285 289 0 25 chr9 779436 779557 -117083070 - MER5B DNA MER1_type -60 118 1 2267 100 6 10 chr9 781162 781473 -117081154 - AluSq SINE Alu -3 310 1 1851 136 17 10 chr9 781913 782208 -117080419 + AluJo SINE Alu 3 299 -13 2280 93 3 13 chr9 783090 783390 -117079237 + AluSx SINE Alu 1 297 -15 3981 163 35 49 chr9 783431 784227 -117078400 - LTR1 LTR ERV1 0 785 1 2108 110 13 10 chr9 784648 784957 -117077670 - AluSx SINE Alu -2 310 1 24 32 0 0 chr9 785071 785102 -117077525 + AT_rich Low_complexity Low_complexity 1 31 0 1069 107 6 47 chr9 785442 785611 -117077016 + AluSq SINE Alu 133 294 -19 241 180 0 20 chr9 786482 786532 -117076095 + L2 LINE L2 3263 3311 -2 1841 143 27 7 chr9 786701 787001 -117075626 - AluJb SINE Alu -6 306 1 795 189 16 63 chr9 787214 787246 -117075381 - MER5A DNA MER1_type -7 182 150 888 133 0 15 chr9 787246 787381 -117075246 + FLAM_C SINE Alu 1 133 0 795 189 16 63 chr9 787381 787539 -117075088 - MER5A DNA MER1_type -39 150 1 814 138 57 13 chr9 788488 788647 -117073980 - FRAM SINE Alu 0 166 1 2117 107 0 49 chr9 789105 789432 -117073195 - AluSx SINE Alu -1 311 1 895 147 0 14 chr9 789459 789602 -117073025 + FLAM_C SINE Alu 1 141 -2 1660 141 0 16 chr9 789622 789877 -117072750 + AluSx SINE Alu 57 307 -5 2143 111 0 32 chr9 789910 790225 -117072402 - AluY SINE Alu -6 305 1 218 200 150 0 chr9 790295 790355 -117072272 - L2 LINE L2 -9 3263 3195 427 257 46 4 chr9 791661 791811 -117070816 + MER58A DNA MER1_type 1 216 -8 315 303 0 10 chr9 792641 792740 -117069887 + (CA)n Simple_repeat Simple_repeat 1 98 0 222 62 0 0 chr9 793188 793220 -117069407 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2205 104 0 3 chr9 793228 793516 -117069111 - AluSx SINE Alu -25 287 1 216 268 94 71 chr9 793672 793799 -117068828 + L3 LINE CR1 1445 1574 -3 1649 137 13 48 chr9 793923 794203 -117068424 - L1MA9 LINE L1 -1 6311 6042 2395 83 0 0 chr9 794203 794504 -117068123 - AluSc SINE Alu -8 301 1 1649 137 13 48 chr9 794504 794538 -117068089 - L1MA9 LINE L1 -270 6042 6008 1189 102 60 0 chr9 794682 794848 -117067779 - AluSg/x SINE Alu -4 306 131 350 195 78 0 chr9 794848 794925 -117067702 - L1MA9 LINE L1 -296 6016 5934 2344 98 0 0 chr9 794934 795229 -117067398 + AluSg SINE Alu 1 295 -15 2020 88 0 22 chr9 795492 795802 -117066825 - AluSc SINE Alu 0 319 16 660 131 0 0 chr9 795912 796011 -117066616 + FRAM SINE Alu 66 164 -12 2211 118 3 13 chr9 796505 796820 -117065807 - AluSx SINE Alu 0 312 1 1372 133 90 8 chr9 797260 797516 -117065111 - L1 LINE L1 -1577 4569 4293 1648 161 20 43 chr9 799088 799393 -117063234 - AluJo SINE Alu -14 298 1 1860 165 3 19 chr9 799402 799718 -117062909 - AluJb SINE Alu -1 311 1 2440 84 0 0 chr9 799720 800028 -117062599 - AluSx SINE Alu -4 308 1 2391 75 10 0 chr9 800313 800606 -117062021 - AluSx SINE Alu -11 301 6 2175 121 0 7 chr9 800893 801190 -117061437 - AluSx SINE Alu -17 295 1 194 158 0 0 chr9 802965 803003 -117059624 - L2 LINE L2 -20 3252 3215 2321 84 10 0 chr9 803064 803360 -117059267 + AluSp SINE Alu 1 299 -14 543 247 102 24 chr9 803464 803630 -117058997 - MER97a DNA MER1_type? -715 179 1 327 25 0 0 chr9 803876 803916 -117058711 + (TG)n Simple_repeat Simple_repeat 1 40 0 256 283 34 0 chr9 804188 804296 -117058331 - MIR SINE MIR -62 146 31 294 50 0 0 chr9 804422 804462 -117058165 + (CA)n Simple_repeat Simple_repeat 2 41 0 388 256 62 74 chr9 806013 806189 -117056438 + MER112 DNA MER1_type 3 176 -84 261 0 0 0 chr9 806231 806260 -117056367 + (TG)n Simple_repeat Simple_repeat 2 30 0 1804 155 7 17 chr9 806572 806863 -117055764 + AluJo SINE Alu 1 288 -24 1734 180 7 7 chr9 808110 808415 -117054212 - AluJb SINE Alu -7 305 1 702 260 18 27 chr9 809496 809715 -117052912 - MER20 DNA MER1_type -2 217 1 2355 98 7 3 chr9 809882 810189 -117052438 - AluSx SINE Alu 0 312 5 1673 154 44 65 chr9 810355 810738 -117051889 - THE1C LTR MaLR 0 375 1 549 220 54 30 chr9 811164 811332 -117051295 + MER5B DNA MER1_type 1 172 -6 348 137 61 34 chr9 811348 811474 -117051153 + MER58 DNA MER1_type 169 2420 0 1894 135 11 0 chr9 812015 812297 -117050330 + AluSx SINE Alu 1 285 -27 2572 66 0 0 chr9 812694 812998 -117049629 + AluY SINE Alu 1 304 -7 27 29 0 0 chr9 814113 814147 -117048480 + AT_rich Low_complexity Low_complexity 1 34 0 2313 87 0 3 chr9 814147 814434 -117048193 - AluY SINE Alu -25 286 1 199 328 52 17 chr9 814454 814570 -117048057 - MIR SINE MIR -79 183 64 1742 178 0 17 chr9 814775 815073 -117047554 - AluJo SINE Alu -19 293 1 3605 246 51 54 chr9 817927 819251 -117043376 - L2 LINE L2 -457 2857 1537 396 220 220 0 chr9 819231 819404 -117043223 + MER5C DNA MER1_type 11 221 -103 * 3653 145 73 16 chr9 819409 820056 -117042571 - L1MB5 LINE L1 0 6174 5491 1136 130 52 42 chr9 820077 820269 -117042358 + AluJo SINE Alu 85 278 -34 1639 176 8 0 chr9 820313 820580 -117042047 - AluJb SINE Alu -43 269 1 448 195 0 76 chr9 820600 820718 -117041909 + MER5C DNA MER1_type 215 323 -1 240 190 103 0 chr9 820720 820778 -117041849 - L2 LINE L2 -1750 1564 1501 229 253 67 67 chr9 821553 821628 -117040999 - MIR3 SINE MIR -18 190 116 2185 120 0 0 chr9 822472 822773 -117039854 - AluSx SINE Alu -11 301 1 207 211 0 0 chr9 824041 824079 -117038548 + T-rich Low_complexity Low_complexity 3 40 0 309 224 214 0 chr9 824108 824206 -117038421 - MIR SINE MIR -34 228 110 279 0 0 0 chr9 825089 825120 -117037507 + (GA)n Simple_repeat Simple_repeat 2 32 0 596 166 103 34 chr9 827104 827230 -117035397 - MER53 DNA DNA -1 188 72 350 0 44 0 chr9 827230 827275 -117035352 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1858 134 0 4 chr9 827278 827540 -117035087 - AluSx SINE Alu -51 261 1 596 166 103 34 chr9 827540 827584 -117035043 - MER53 DNA DNA -118 71 2 640 134 0 10 chr9 827701 827798 -117034829 - FLAM_A SINE Alu -12 130 35 1375 153 27 135 chr9 828617 828818 -117033809 - AluJo SINE Alu -14 298 146 2409 69 10 0 chr9 828818 829109 -117033518 - AluY SINE Alu -17 294 1 1375 153 27 135 chr9 829109 829241 -117033386 - AluJo SINE Alu -166 146 1 2208 163 39 5 chr9 829250 829636 -117032991 - L1MB7 LINE L1 0 6184 5786 1394 166 101 93 chr9 829874 830259 -117032368 - MLT1B LTR MaLR -2 388 1 180 0 0 0 chr9 830568 830588 -117032039 + (CATTT)n Simple_repeat Simple_repeat 2 21 0 1266 217 50 34 chr9 830968 831290 -117031337 - MER21B LTR ERV1 -124 739 413 2282 94 0 13 chr9 831316 831614 -117031013 - AluSx SINE Alu -14 298 5 878 210 24 54 chr9 831617 831822 -117030805 - MER21B LTR ERV1 -664 199 1 755 235 96 0 chr9 832013 832200 -117030427 - MER3 DNA MER1_type 0 209 5 623 204 0 72 chr9 832602 832783 -117029844 - L1MB7 LINE L1 -893 5253 5086 1009 169 0 12 chr9 832785 832945 -117029682 + FRAM SINE Alu 1 157 -19 919 165 20 42 chr9 832964 833178 -117029449 - L1M4 LINE L1 -1055 5091 4867 2337 86 3 7 chr9 834871 835172 -117027455 + AluSq SINE Alu 1 300 -13 5255 189 57 13 chr9 835215 837302 -117025325 - L1MB4 LINE L1 0 6180 3989 2605 176 6 6 chr9 838279 838762 -117023865 + L1M3 LINE L1 5310 5792 -388 * 4310 164 55 37 chr9 838755 840127 -117022500 + L1MB3 LINE L1 4787 6183 0 600 308 50 32 chr9 840147 840649 -117021978 - L1MB4 LINE L1 -2203 3943 3416 1865 169 3 0 chr9 840672 840974 -117021653 - AluJb SINE Alu -9 303 1 181 339 62 0 chr9 841309 841374 -117021253 - MIR SINE MIR -162 100 32 413 274 58 58 chr9 842363 842622 -117020005 + MIR SINE MIR 2 260 -2 2075 120 0 14 chr9 843541 843857 -117018770 - AluSx SINE Alu 0 312 1 367 290 166 50 chr9 844323 844788 -117017839 - L1MC4a LINE L1 -1877 5931 5413 1557 122 32 5 chr9 845554 845775 -117016852 - MER30 DNA MER1_type 0 230 4 184 234 78 47 chr9 845956 846020 -117016607 - MIR3 SINE MIR -1 207 142 736 102 0 0 chr9 846021 846119 -117016508 - AluSg/x SINE Alu -8 304 207 317 54 161 18 chr9 846120 846176 -117016451 - MIR SINE MIR -55 153 90 1993 150 17 0 chr9 847180 847305 -117015322 + AluSx SINE Alu 6 127 -185 387 0 0 0 chr9 847305 847348 -117015279 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1993 150 17 0 chr9 847348 847516 -117015111 + AluSx SINE Alu 127 304 -8 1317 155 163 26 chr9 847525 847789 -117014838 + AluJo SINE Alu 2 301 -1 3772 170 28 21 chr9 847794 848513 -117014114 - L1MA10 LINE L1 -7 6327 5604 486 249 191 11 chr9 848813 849002 -117013625 + MIR SINE MIR 40 262 0 33 25 0 0 chr9 849586 849626 -117013001 + AT_rich Low_complexity Low_complexity 1 40 0 505 309 124 5 chr9 850335 850545 -117012082 - MIR SINE MIR -8 254 20 385 272 54 0 chr9 850550 850642 -117011985 + L2 LINE L2 3168 3264 -8 2200 103 20 0 chr9 853040 853341 -117009286 - AluSg SINE Alu -3 307 1 230 282 24 12 chr9 853359 853444 -117009183 - L2 LINE L2 -1030 2284 2199 1716 163 14 7 chr9 853829 854112 -117008515 + AluJb SINE Alu 6 290 -22 3690 151 44 27 chr9 854140 854817 -117007810 + L1MB3 LINE L1 5450 6138 -45 1171 144 0 0 chr9 854819 854993 -117007634 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr9 855121 855143 -117007484 + AT_rich Low_complexity Low_complexity 1 22 0 1304 127 84 14 chr9 855341 855554 -117007073 - L1PA16 LINE L1 0 6166 5939 2033 143 3 0 chr9 856129 856436 -117006191 + AluSx SINE Alu 1 308 -4 2118 122 0 3 chr9 856774 857069 -117005558 - AluSx SINE Alu -18 294 1 2160 122 3 0 chr9 857925 858229 -117004398 - AluSx SINE Alu -7 305 1 212 246 138 0 chr9 858335 858400 -117004227 - L2 LINE L2 -2 3270 3197 292 237 92 0 chr9 858921 858997 -117003630 - MIR SINE MIR -75 187 105 384 199 32 12 chr9 859448 859556 -117003071 - MIR SINE MIR -61 147 36 284 262 37 0 chr9 860284 860362 -117002265 - MIR SINE MIR -58 150 76 194 0 0 37 chr9 860947 860974 -117001653 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 457 324 62 6 chr9 863150 863326 -116999301 - L1ME LINE L1 -462 5659 5474 23 0 0 0 chr9 864744 864767 -116997860 + AT_rich Low_complexity Low_complexity 1 23 0 205 161 0 0 chr9 866341 866372 -116996255 + polypyrimidine Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 866917 866947 -116995680 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 869275 869296 -116993331 + GC_rich Low_complexity Low_complexity 1 21 0 1839 101 63 7 chr9 869554 869840 -116992787 + AluSx SINE Alu 3 304 -8 208 53 53 0 chr9 873885 873923 -116988704 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 201 288 18 45 chr9 874917 875028 -116987599 + G-rich Low_complexity Low_complexity 3 110 0 326 222 9 19 chr9 875690 875798 -116986829 + (CCG)n Simple_repeat Simple_repeat 3 109 0 238 152 0 0 chr9 878986 879032 -116983595 - LTR66 LTR ERVL -168 442 397 437 209 9 9 chr9 880435 880540 -116982087 + MER53 DNA DNA 84 188 -1 229 220 17 17 chr9 881209 881268 -116981359 + CT-rich Low_complexity Low_complexity 3 61 0 220 299 46 46 chr9 881939 882026 -116980601 + L2 LINE L2 3186 3272 0 2081 88 10 10 chr9 882861 883158 -116979469 - AluY SINE Alu -14 297 1 2153 105 0 0 chr9 885012 885307 -116977320 + AluSg SINE Alu 1 295 -15 2852 137 46 0 chr9 885435 885814 -116976813 - L1MB3 LINE L1 -1 6182 5775 405 0 0 0 chr9 885814 885859 -116976768 + (TG)n Simple_repeat Simple_repeat 2 46 0 2852 137 46 0 chr9 885859 885955 -116976672 - L1MB3 LINE L1 -408 5775 5685 319 214 0 0 chr9 890333 890389 -116972238 - L2 LINE L2 0 3272 3217 1646 182 34 0 chr9 891202 891493 -116971134 + AluJb SINE Alu 1 301 -11 2263 107 0 0 chr9 891955 892263 -116970364 + AluSx SINE Alu 1 308 -4 239 310 200 0 chr9 892794 892939 -116969688 + MER5A DNA MER1_type 10 183 -6 365 361 67 0 chr9 894610 894790 -116967837 + MER91A DNA MER1_type 4 195 -1 2267 102 0 0 chr9 895230 895534 -116967093 - AluSc SINE Alu -5 304 1 2093 96 7 0 chr9 895867 896202 -116966425 + AluSq SINE Alu 1 313 0 1533 156 23 0 chr9 896288 896544 -116966083 + AluJo SINE Alu 1 262 -50 601 209 155 39 chr9 896554 896760 -116965867 - MIR SINE MIR 0 262 33 196 333 25 37 chr9 897860 897941 -116964686 - MER5A DNA MER1_type -29 160 81 201 149 0 64 chr9 898415 898462 -116964165 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 370 200 44 0 chr9 899243 899333 -116963294 - MER53 DNA DNA -15 174 81 279 0 0 0 chr9 899341 899372 -116963255 + (TG)n Simple_repeat Simple_repeat 2 32 0 499 163 24 65 chr9 899473 899596 -116963031 - MER53 DNA DNA -71 118 1 508 260 46 35 chr9 899677 899850 -116962777 + Charlie8 DNA MER1_type 2 176 -2241 237 238 32 16 chr9 900106 900169 -116962458 + MIR SINE MIR 85 148 -60 619 158 10 0 chr9 900264 900365 -116962262 - U6 snRNA snRNA -5 102 1 319 188 58 0 chr9 900567 900636 -116961991 - MLT1I LTR MaLR -11 398 326 1773 126 33 4 chr9 900700 900970 -116961657 - AluSx SINE Alu -12 300 23 293 287 53 0 chr9 901067 901161 -116961466 - MLT1J2 LTR MaLR -306 144 46 2170 107 3 0 chr9 901393 901692 -116960935 - AluSq SINE Alu -13 300 1 258 254 0 0 chr9 901713 901772 -116960855 - MIR SINE MIR -58 204 146 1636 170 0 56 chr9 902516 902839 -116959788 - AluJb SINE Alu -7 305 1 779 266 71 77 chr9 902857 903466 -116959161 - L1MC4a LINE L1 -1845 5963 5359 1763 152 0 23 chr9 903901 904210 -116958417 + AluJb SINE Alu 1 302 -10 451 290 127 56 chr9 904211 904769 -116957858 - L1MC5 LINE L1 -38 7923 7326 233 198 23 70 chr9 904975 905018 -116957609 - L1MC4 LINE L1 -835 7207 7168 2185 87 13 10 chr9 905018 905327 -116957300 - AluSx SINE Alu -1 311 2 233 198 23 70 chr9 905327 905369 -116957258 - L1MC4 LINE L1 -874 7168 7126 641 279 153 5 chr9 906265 906480 -116956147 + MIR SINE MIR 3 249 -13 4924 121 16 15 chr9 906705 907500 -116955127 + L1MA4A LINE L1 5507 6302 -1 371 253 40 0 chr9 908335 908434 -116954193 + MER5A DNA MER1_type 13 115 -74 468 257 48 0 chr9 908493 908598 -116954029 + MER5B DNA MER1_type 1 110 -68 1505 187 3 20 chr9 909028 909327 -116953300 - AluJo SINE Alu -18 294 1 310 258 0 0 chr9 909331 909393 -116953234 + MER5A DNA MER1_type 128 189 0 2040 103 0 48 chr9 909794 910105 -116952522 - AluSx SINE Alu -16 296 1 499 237 8 38 chr9 910716 910847 -116951780 - Charlie8 DNA MER1_type -2214 203 77 192 77 0 0 chr9 910857 910883 -116951744 + (A)n Simple_repeat Simple_repeat 1 26 0 2230 85 3 0 chr9 911005 911298 -116951329 + AluSx SINE Alu 1 294 -18 497 251 71 51 chr9 911802 912113 -116950514 + HAL1b LINE L1 658 974 -374 3407 233 40 7 chr9 912236 913124 -116949503 - L1ME3A LINE L1 -18 6152 5237 2106 266 74 17 chr9 913186 913815 -116948812 - L1ME3A LINE L1 -1121 5025 4343 2058 128 0 0 chr9 913815 914113 -116948514 + AluJb SINE Alu 1 298 -14 2106 266 74 17 chr9 914113 914254 -116948373 - L1ME3A LINE L1 -1803 4343 4211 55 0 0 0 chr9 914588 914643 -116947984 + AT_rich Low_complexity Low_complexity 1 55 0 2021 112 3 3 chr9 914643 914937 -116947690 - AluSx SINE Alu -18 294 1 1874 150 0 0 chr9 914946 915233 -116947394 - AluSx SINE Alu -25 287 1 2216 178 22 10 chr9 915243 915805 -116946822 - L1M4 LINE L1 -704 5480 4911 457 303 198 17 chr9 916941 917103 -116945524 - L2 LINE L2 -1 3271 3140 1916 112 11 4 chr9 917103 917371 -116945256 + AluSq SINE Alu 1 270 -43 457 303 198 17 chr9 917371 917672 -116944955 - L2 LINE L2 -132 3140 2709 1809 159 18 0 chr9 918677 918960 -116943667 - AluJb SINE Alu -24 288 1 223 156 67 0 chr9 919132 919177 -116943450 - L2 LINE L2 -93 3220 3173 582 281 95 33 chr9 920039 920281 -116942346 + MIR SINE MIR 6 262 0 3051 201 60 31 chr9 920421 920583 -116942044 - L1ME1 LINE L1 -126 6040 5884 2260 122 0 0 chr9 920583 920878 -116941749 - AluSx SINE Alu -17 295 1 3051 201 60 31 chr9 920878 921530 -116941097 - L1ME1 LINE L1 -282 5884 5200 234 278 204 12 chr9 922206 922368 -116940259 - MIR SINE MIR -58 204 12 2073 140 3 0 chr9 923123 923415 -116939212 + AluSx SINE Alu 1 293 -19 222 80 60 0 chr9 924288 924338 -116938289 + CT-rich Low_complexity Low_complexity 1 53 0 1702 167 14 24 chr9 924338 924626 -116938001 - AluJb SINE Alu -27 285 1 398 279 84 19 chr9 924687 924841 -116937786 - L1ME LINE L1 -345 5776 5613 687 217 24 18 chr9 924846 925012 -116937615 + MIR SINE MIR 75 241 -21 2239 117 0 7 chr9 925634 925932 -116936695 - AluSx SINE Alu -16 296 1 658 291 78 21 chr9 926274 926720 -116935907 - L1MC/D LINE L1 -328 5793 5337 231 197 13 26 chr9 926799 926875 -116935752 + CT-rich Low_complexity Low_complexity 2 76 0 861 191 33 6 chr9 928652 928835 -116933792 + MER5A DNA MER1_type 2 189 0 1564 184 28 31 chr9 928902 929256 -116933371 - L1MA9 LINE L1 -2 6310 5958 186 287 223 0 chr9 929285 929379 -116933248 - MIR SINE MIR -121 141 27 1993 112 64 14 chr9 929402 929697 -116932930 + AluSx SINE Alu 1 310 -2 530 208 69 39 chr9 929786 929916 -116932711 - MER63A DNA MER1_type -1 209 76 292 175 15 153 chr9 931272 931351 -116931276 + L1ME2 LINE L1 6038 6092 -72 1574 194 17 10 chr9 931351 931644 -116930983 + AluJb SINE Alu 1 295 -17 292 175 15 153 chr9 931644 931701 -116930926 + L1ME2 LINE L1 6092 6155 -9 222 185 19 0 chr9 932251 932305 -116930322 + MIR3 SINE MIR 153 207 -1 1932 139 33 3 chr9 933208 933510 -116929117 - AluJb SINE Alu -1 311 1 368 231 108 0 chr9 933600 933730 -116928897 - MER117 DNA MER1_type -50 147 4 295 155 0 34 chr9 934090 934162 -116928465 + Alu SINE Alu 244 302 0 1738 172 37 3 chr9 934335 934631 -116927996 - AluJb SINE Alu -6 306 1 410 310 43 27 chr9 934949 935133 -116927494 + MIR SINE MIR 11 197 -65 256 86 0 0 chr9 935184 935219 -116927408 - U2 snRNA snRNA -153 35 1 521 278 98 8 chr9 935333 935597 -116927030 + L2 LINE L2 2719 3017 -296 37 62 0 0 chr9 935663 935728 -116926899 + AT_rich Low_complexity Low_complexity 1 65 0 1879 164 3 13 chr9 938924 939236 -116923391 - AluJb SINE Alu -3 309 1 291 268 0 0 chr9 940079 940150 -116922477 - MIR SINE MIR -110 152 82 200 216 134 82 chr9 941687 941784 -116920843 - MIR3 SINE MIR -54 154 53 258 290 11 32 chr9 942683 942776 -116919851 - MIR3 SINE MIR -35 173 83 22 0 0 0 chr9 942830 942852 -116919775 + GC_rich Low_complexity Low_complexity 1 22 0 2611 32 3 10 chr9 943558 943869 -116918758 - AluY SINE Alu -2 309 1 24 0 0 0 chr9 944869 944893 -116917734 + AT_rich Low_complexity Low_complexity 1 24 0 1567 130 0 20 chr9 944984 945238 -116917389 - AluJb SINE Alu -34 278 30 210 209 0 90 chr9 945318 945385 -116917242 + G-rich Low_complexity Low_complexity 6 66 0 268 180 107 41 chr9 945764 945886 -116916741 - MIR SINE MIR -98 164 35 211 280 97 21 chr9 947158 947251 -116915376 + MIR SINE MIR 108 207 -55 218 111 0 44 chr9 947687 947732 -116914895 - L2 LINE L2 -9 3304 3262 26 64 0 0 chr9 950059 950106 -116912521 + GC_rich Low_complexity Low_complexity 1 47 0 233 270 0 0 chr9 950106 950180 -116912447 + (CGA)n Simple_repeat Simple_repeat 2 75 0 1030 133 0 0 chr9 950465 950608 -116912019 - AluSg SINE Alu -165 145 3 335 278 9 26 chr9 950806 950921 -116911706 - L1MC4a LINE L1 -1866 5942 5830 252 308 11 0 chr9 950961 951052 -116911575 - MIR3 SINE MIR -28 180 89 217 204 20 0 chr9 951226 951275 -116911352 - MIR SINE MIR -125 137 88 278 332 58 13 chr9 952528 952809 -116909818 + L3 LINE CR1 1075 1416 -161 193 296 74 25 chr9 952930 953011 -116909616 - MER5B DNA MER1_type -72 106 22 209 196 0 39 chr9 953427 953478 -116909149 - MIR3 SINE MIR -13 195 147 230 339 16 0 chr9 953483 953545 -116909082 - MIR SINE MIR -112 96 34 389 337 17 6 chr9 954030 954202 -116908425 - MER5A DNA MER1_type -9 180 7 346 276 142 0 chr9 955541 955766 -116906861 - L1MC4a LINE L1 -1847 5961 5705 629 226 25 25 chr9 956039 956198 -116906429 + L1ME1 LINE L1 5938 6096 -70 * 1392 194 39 51 chr9 956192 956548 -116906079 + L1MA10 LINE L1 5976 6327 -7 302 127 0 0 chr9 956573 956628 -116905999 + L1MB8 LINE L1 6108 6162 -16 198 0 0 0 chr9 957742 957764 -116904863 + (T)n Simple_repeat Simple_repeat 1 22 0 259 207 69 0 chr9 959882 959940 -116902687 + U6 snRNA snRNA 1 62 -45 180 77 0 0 chr9 960174 960200 -116902427 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 25 0 0 0 chr9 960631 960656 -116901971 + AT_rich Low_complexity Low_complexity 1 25 0 207 69 0 0 chr9 961447 961476 -116901151 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 227 255 0 64 chr9 961544 961638 -116900989 + T-rich Low_complexity Low_complexity 5 92 0 203 77 0 26 chr9 961890 961929 -116900698 + (CAA)n Simple_repeat Simple_repeat 2 39 0 678 167 0 24 chr9 964260 964386 -116898241 - AluJb SINE Alu -22 290 168 2431 36 0 0 chr9 965137 965449 -116897178 + AluY SINE Alu 1 312 0 2144 105 14 0 chr9 966003 966299 -116896328 - AluSq SINE Alu -13 300 1 1748 119 85 107 chr9 966441 966843 -116895784 - L1MB3 LINE L1 -2 6181 5789 180 179 0 0 chr9 966844 966883 -116895744 + (TG)n Simple_repeat Simple_repeat 2 40 0 276 235 11 49 chr9 967219 967402 -116895225 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 587 238 0 2 chr9 967402 967558 -116895069 - L1MB3 LINE L1 -378 5796 5643 23 0 0 0 chr9 968131 968154 -116894473 + AT_rich Low_complexity Low_complexity 1 23 0 269 385 0 8 chr9 968688 968818 -116893809 + LTR16B LTR ERVL 102 230 -234 1524 330 123 29 chr9 969658 970645 -116891982 + L3 LINE CR1 355 1433 -144 2320 98 3 0 chr9 970964 971259 -116891368 - AluSp SINE Alu -17 296 1 1291 159 89 63 chr9 971266 971404 -116891223 - AluJo SINE Alu -16 296 163 195 0 27 54 chr9 971404 971441 -116891186 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 15724 91 5 11 chr9 971448 974334 -116888293 - L1PA7 LINE L1 -13 6141 3268 2151 134 0 0 chr9 974334 974641 -116887986 - AluSc SINE Alu -1 308 2 15724 91 5 11 chr9 974641 974809 -116887818 - L1PA7 LINE L1 -2886 3268 3100 1291 159 89 63 chr9 974809 974932 -116887695 - AluJo SINE Alu -154 158 20 2216 123 21 39 chr9 974951 975334 -116887293 - Tigger2a DNA MER2_type -58 376 1 1881 175 46 9 chr9 975379 975704 -116886923 - MER1B DNA MER1_type 0 337 1 191 265 15 44 chr9 976611 976679 -116885948 - L2 LINE L2 0 3313 3248 1249 199 0 5 chr9 976734 976945 -116885682 + AluJo SINE Alu 84 293 -19 729 261 97 39 chr9 977151 977534 -116885093 + MLT1J LTR MaLR 6 410 -101 2338 135 103 97 chr9 977585 978245 -116884382 - MER4A LTR ERV1 0 664 1 657 281 63 28 chr9 978799 979052 -116883575 - MIR SINE MIR 0 262 1 534 132 0 0 chr9 979594 979670 -116882957 - AluS SINE Alu -13 296 221 1030 120 7 0 chr9 979670 979820 -116882807 - AluJb SINE Alu -161 151 1 2330 78 17 0 chr9 979829 980122 -116882505 - AluY SINE Alu -13 298 1 2408 85 13 3 chr9 980137 980443 -116882184 - AluY SINE Alu 0 311 3 30 0 0 78 chr9 980872 980902 -116881725 + AT_rich Low_complexity Low_complexity 1 25 -34 1999 142 0 13 chr9 980902 981204 -116881423 - AluSx SINE Alu -14 298 1 30 0 0 78 chr9 981204 981237 -116881390 + AT_rich Low_complexity Low_complexity 25 59 0 2293 94 3 10 chr9 981308 981605 -116881022 - AluSg SINE Alu -15 295 1 720 217 39 10 chr9 983669 983876 -116878751 - L1MB3 LINE L1 -3 6180 5968 304 271 141 40 chr9 984041 984201 -116878426 - L1ME LINE L1 -545 5579 5397 237 322 22 11 chr9 984204 984384 -116878243 - L1ME LINE L1 -750 5396 5215 1884 149 4 0 chr9 984596 984877 -116877750 - AluJo SINE Alu -30 282 1 751 297 119 33 chr9 984877 985967 -116876660 - L1ME LINE L1 -1089 5057 3874 669 249 94 26 chr9 986223 986456 -116876171 - MIR SINE MIR -13 249 1 1209 211 39 24 chr9 986570 986907 -116875720 + L1MC4 LINE L1 6806 7147 -895 801 234 85 60 chr9 987059 987494 -116875133 + L1MC4 LINE L1 7587 8032 -10 1268 124 119 0 chr9 987555 987756 -116874871 + AluJo SINE Alu 87 311 -1 260 62 42 0 chr9 988340 988388 -116874239 - L1MB3 LINE L1 -7 6176 6127 894 188 42 16 chr9 988397 988589 -116874038 + Tigger2 DNA MER2_type 1 197 -2521 2584 125 48 2 chr9 988689 989129 -116873498 + Tigger2 DNA MER2_type 57 516 -2202 2446 64 0 6 chr9 989137 989448 -116873179 - AluSg SINE Alu 0 310 2 1367 235 76 53 chr9 989448 990133 -116872494 - MER49 LTR ERV1 -41 881 5 1163 119 0 0 chr9 990141 990309 -116872318 + Tigger2 DNA MER2_type 577 744 -1974 1457 146 4 15 chr9 990364 990625 -116872002 + Tigger2 DNA MER2_type 2461 2718 0 3139 145 31 22 chr9 990627 991283 -116871344 - L1MB3 LINE L1 -64 6119 5417 757 224 75 0 chr9 991560 991734 -116870893 - MER5A DNA MER1_type 0 189 3 21 0 0 0 chr9 991762 991783 -116870844 + AT_rich Low_complexity Low_complexity 1 21 0 379 240 72 72 chr9 993663 993788 -116868839 + MLT1D LTR MaLR 1 125 -380 297 143 0 0 chr9 993789 993838 -116868789 + MLT1D LTR MaLR 457 505 0 438 257 179 14 chr9 993936 994076 -116868551 - MER5A DNA MER1_type 0 189 27 308 184 88 79 chr9 994515 994629 -116867998 - L1ME4a LINE L1 -1 6120 6006 985 156 22 0 chr9 994825 995004 -116867623 + MER20 DNA MER1_type 33 215 -4 819 205 5 60 chr9 995014 995214 -116867413 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr9 996360 996388 -116866239 + AT_rich Low_complexity Low_complexity 1 28 0 400 257 122 15 chr9 996454 996604 -116866023 - MIR SINE MIR -60 148 20 890 219 11 0 chr9 998138 998321 -116864306 - MER5A DNA MER1_type -1 188 4 229 321 80 51 chr9 999038 999175 -116863452 - MIR3 SINE MIR -65 143 3 180 0 0 0 chr9 999807 999827 -116862800 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 231 167 0 0 chr9 1000180 1000222 -116862405 + (CATA)n Simple_repeat Simple_repeat 2 43 0 6413 86 7 12 chr9 1000248 1001547 -116861080 - L1PA13 LINE L1 -19 6144 4849 414 37 0 0 chr9 1001553 1001607 -116861020 - MLT2A1 LTR ERVL 0 444 391 183 42 0 0 chr9 1001615 1001639 -116860988 + (TA)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr9 1001727 1001750 -116860877 + (TA)n Simple_repeat Simple_repeat 1 23 0 439 201 22 39 chr9 1001804 1001983 -116860644 + (TA)n Simple_repeat Simple_repeat 1 176 0 316 253 101 0 chr9 1001984 1002083 -116860544 + L1MC4 LINE L1 6583 6691 -1351 2905 94 0 5 chr9 1002083 1002489 -116860138 - MLT2A1 LTR ERVL -40 404 1 10235 158 16 19 chr9 1002551 1003703 -116858924 - L1P LINE L1 -1295 4851 3698 369 0 0 0 chr9 1003703 1003744 -116858883 + (TG)n Simple_repeat Simple_repeat 1 41 0 10235 158 16 19 chr9 1003744 1003961 -116858666 - L1P LINE L1 -2448 3698 3482 1077 63 0 7 chr9 1003961 1004103 -116858524 - L1PA5 LINE L1 -7 6147 6007 10235 158 16 19 chr9 1004103 1004761 -116857866 - L1P LINE L1 -2664 3482 2828 6170 88 1 4 chr9 1004761 1005615 -116857012 - L1PA8 LINE L1 0 6172 5314 2269 102 7 0 chr9 1005615 1005918 -116856709 - AluSq SINE Alu -8 305 1 6170 88 1 4 chr9 1005918 1006588 -116856039 - L1PA8 LINE L1 -858 5314 4644 4243 216 46 11 chr9 1006592 1007747 -116854880 - L1M4 LINE L1 -1551 4595 3401 444 153 28 0 chr9 1057748 1057820 -116804807 - AluJ/FLAM SINE Alu -238 74 1 334 299 84 24 chr9 1057820 1057987 -116804640 + L2 LINE L2 1945 2121 -1193 201 191 44 103 chr9 1057977 1058045 -116804582 + MER5B DNA MER1_type 9 72 -106 * 327 296 87 0 chr9 1058033 1058148 -116804479 + L2 LINE L2 2250 2374 -940 3872 156 21 0 chr9 1058555 1059265 -116803362 - L1MA7 LINE L1 -10 6485 5761 1261 108 36 115 chr9 1059265 1059544 -116803083 - Tigger7 DNA MER2_type -1 2486 2230 11004 166 33 18 chr9 1059578 1059814 -116802813 - L1MA7 LINE L1 -728 5767 5536 212 77 26 0 chr9 1059814 1059853 -116802774 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6542 34 12 1 chr9 1059854 1061380 -116801247 - L1PA5 LINE L1 -13 6141 4547 11004 166 33 18 chr9 1061380 1063630 -116798997 - L1MA7 LINE L1 -959 5536 3236 2535 11 0 0 chr9 1063630 1063906 -116798721 - AluYa5 SINE Alu 0 311 36 11004 166 33 18 chr9 1063906 1064013 -116798614 - L1MA7 LINE L1 -3259 3236 3132 3558 261 31 34 chr9 1064350 1066018 -116796609 - L1MA7 LINE L1 -3213 3137 1465 1819 176 7 0 chr9 1066018 1066313 -116796314 - AluSx SINE Alu -15 297 1 3558 261 31 34 chr9 1066313 1066893 -116795734 - L1MA7 LINE L1 -4885 1465 1329 2064 143 0 29 chr9 1066893 1067201 -116795426 - AluSx SINE Alu -11 301 3 3558 261 31 34 chr9 1067201 1067930 -116794697 - L1MA7 LINE L1 -5021 1329 599 2952 244 9 23 chr9 1067907 1067992 -116794635 - L1MA7 LINE L1 -5543 738 653 * 2431 70 0 19 chr9 1067992 1068304 -116794323 + AluY SINE Alu 1 306 -5 2952 244 9 23 chr9 1068304 1068965 -116793662 - L1MA7 LINE L1 -5628 653 2 200 205 0 0 chr9 1069035 1069074 -116793553 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 309 148 26 chr9 1069153 1069681 -116792946 - L2 LINE L2 -949 2365 1774 313 309 71 52 chr9 1069735 1069945 -116792682 + L1ME LINE L1 51 264 -5855 1078 302 25 24 chr9 1070363 1071144 -116791483 + L1ME LINE L1 742 1564 -4746 3388 163 34 34 chr9 1071168 1071782 -116790845 - L1MB1 LINE L1 -225 5943 5330 2201 108 0 3 chr9 1071782 1072079 -116790548 - AluSg SINE Alu -14 296 1 3388 163 34 34 chr9 1072079 1072938 -116789689 - L1MB1 LINE L1 -838 5330 3734 22135 48 2 0 chr9 1073084 1073730 -116788897 + L1PA5 LINE L1 2562 3205 -2949 2377 81 0 0 chr9 1073730 1074026 -116788601 - AluY SINE Alu -15 296 1 22135 48 2 0 chr9 1074026 1076975 -116785652 + L1PA5 LINE L1 3205 6153 -1 254 274 67 12 chr9 1077030 1077194 -116785433 + L1ME LINE L1 3267 3439 -2690 * 285 353 55 0 chr9 1077170 1077388 -116785239 + L1ME LINE L1 3365 3594 -2535 1062 282 78 32 chr9 1079129 1079383 -116783244 + L1ME LINE L1 3608 3849 -2280 2289 104 0 13 chr9 1079383 1079700 -116782927 + AluSq SINE Alu 1 313 0 1062 282 78 32 chr9 1079700 1080155 -116782472 + L1ME LINE L1 3849 4349 -1780 428 238 37 18 chr9 1080261 1080425 -116782202 - L1M4 LINE L1 -2107 4039 3873 646 277 140 15 chr9 1080429 1080887 -116781740 + L1ME LINE L1 4493 5007 -1122 1268 194 4 9 chr9 1081068 1081300 -116781327 + MER8 DNA MER2_type 1 231 -8 274 302 53 36 chr9 1081674 1081899 -116780728 - HAL1 LINE L1 -846 1661 1433 351 113 0 0 chr9 1082669 1082722 -116779905 + (CA)n Simple_repeat Simple_repeat 1 53 0 223 254 14 0 chr9 1083128 1083199 -116779428 + (CA)n Simple_repeat Simple_repeat 1 72 0 986 215 24 0 chr9 1083910 1084119 -116778508 - MER58A DNA MER1_type 0 224 11 354 45 0 0 chr9 1085711 1085755 -116776872 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 901 174 0 0 chr9 1085765 1085903 -116776724 - FRAM SINE Alu -38 138 1 419 292 65 53 chr9 1087004 1087401 -116775226 + MLT1J LTR MaLR 79 480 -31 388 223 10 29 chr9 1087433 1087536 -116775091 + MIR SINE MIR 86 186 -76 411 296 0 9 chr9 1087694 1087809 -116774818 + MER81 DNA DNA 1 114 0 242 310 0 0 chr9 1087817 1087888 -116774739 + MER81 DNA DNA 44 114 0 303 297 83 48 chr9 1089742 1089887 -116772740 + MIR SINE MIR 110 259 -3 234 375 75 25 chr9 1090417 1090577 -116772050 - L2 LINE L2 -222 3050 2883 306 182 0 0 chr9 1090711 1090777 -116771850 + CT-rich Low_complexity Low_complexity 1 66 0 695 162 7 0 chr9 1090942 1091084 -116771543 + CT-rich Low_complexity Low_complexity 2 144 0 300 333 8 33 chr9 1091606 1091726 -116770901 - MIR SINE MIR -134 128 12 1510 224 259 23 chr9 1091944 1092472 -116770155 + MER82 DNA MER2_type 1 653 0 392 246 272 15 chr9 1092475 1092670 -116769957 - MIR SINE MIR -10 252 8 223 332 82 0 chr9 1092675 1092776 -116769851 - MIR SINE MIR -77 131 22 309 200 66 0 chr9 1093304 1093393 -116769234 + L1MC/D LINE L1 5715 5808 -313 430 283 61 20 chr9 1093707 1093905 -116768722 - L1MDa LINE L1 -3949 2591 2386 744 261 106 11 chr9 1094090 1094439 -116768188 - L1MDa LINE L1 -4573 2148 1767 497 345 133 15 chr9 1094645 1094984 -116767643 + L1MEd LINE L1 472 850 -5269 204 202 0 36 chr9 1095686 1095770 -116766857 + GA-rich Low_complexity Low_complexity 1 81 0 270 303 18 36 chr9 1096122 1096287 -116766340 - L2 LINE L2 -224 3048 2887 282 29 0 0 chr9 1098042 1098077 -116764550 + (TG)n Simple_repeat Simple_repeat 1 35 0 272 145 290 0 chr9 1101247 1101309 -116761318 - MADE1 DNA Mariner 0 80 1 890 201 48 0 chr9 1101475 1101664 -116760963 + MER58 DNA MER1_type 4 201 -2219 2007 151 6 10 chr9 1101664 1101975 -116760652 + AluJb SINE Alu 1 310 -2 21 0 0 0 chr9 1102341 1102362 -116760265 + AT_rich Low_complexity Low_complexity 1 21 0 809 259 59 4 chr9 1102426 1102665 -116759962 - L1ME1 LINE L1 -8 6158 5907 21 0 0 0 chr9 1102881 1102902 -116759725 + AT_rich Low_complexity Low_complexity 1 21 0 4179 85 51 22 chr9 1104723 1105348 -116757279 + L1PA11 LINE L1 5529 6171 -3 216 0 0 0 chr9 1105938 1105962 -116756665 + (T)n Simple_repeat Simple_repeat 1 24 0 429 275 129 23 chr9 1106807 1106978 -116755649 - MER5A DNA MER1_type 0 189 1 323 246 32 24 chr9 1107187 1107313 -116755314 - L1ME4a LINE L1 -17 6104 5978 250 260 41 24 chr9 1107745 1107868 -116754759 - LTR67 LTR ERVL 0 557 433 635 243 55 141 chr9 1108004 1108044 -116754583 - L2 LINE L2 0 3313 3271 2477 146 50 2 chr9 1108044 1108463 -116754164 - L1PA16 LINE L1 -11 6155 5717 635 243 55 141 chr9 1108463 1108825 -116753802 - L2 LINE L2 -42 3271 2946 * 1191 223 208 29 chr9 1108812 1108856 -116753771 - L2 LINE L2 -581 2733 2698 2220 84 3 17 chr9 1108856 1109153 -116753474 + AluY SINE Alu 1 293 -18 1191 223 208 29 chr9 1109153 1109634 -116752993 - L2 LINE L2 -616 2698 2061 249 375 77 0 chr9 1110031 1110135 -116752492 + L2 LINE L2 3149 3260 -12 649 184 18 9 chr9 1110154 1110268 -116752359 - FLAM_A SINE Alu -17 116 2 1322 283 109 13 chr9 1110353 1110887 -116751740 - MLT1K LTR MaLR -2 586 2 22 35 0 0 chr9 1112366 1112395 -116750232 + AT_rich Low_complexity Low_complexity 1 29 0 359 155 0 28 chr9 1112395 1112466 -116750161 + Charlie5 DNA MER1_type 2233 2301 -311 672 142 9 9 chr9 1112475 1112588 -116750039 - L1MC1 LINE L1 -5 6328 6216 12333 95 10 10 chr9 1112588 1114433 -116748194 - L1P LINE L1 -4301 1845 1 2450 142 11 47 chr9 1114432 1114905 -116747722 - L1MC1 LINE L1 -104 6229 5774 * 267 322 47 53 chr9 1115157 1115328 -116747299 + MIR SINE MIR 20 189 -73 450 127 0 0 chr9 1115374 1115445 -116747182 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2009 138 17 0 chr9 1115445 1115736 -116746891 - AluSx SINE Alu -16 296 1 32172 45 3 2 chr9 1116497 1119445 -116743182 - L1PA4 LINE L1 -9 6146 3201 2378 86 3 0 chr9 1119445 1119746 -116742881 + AluY SINE Alu 1 302 -9 32172 45 3 2 chr9 1119746 1122939 -116739688 - L1PA4 LINE L1 -2954 3201 3 207 215 62 46 chr9 1122989 1123054 -116739573 + L2 LINE L2 3184 3249 -64 300 274 0 0 chr9 1123521 1123605 -116739022 + MER103 DNA DNA 80 163 -3 2289 95 0 25 chr9 1123808 1124124 -116738503 + AluSx SINE Alu 1 308 -4 584 283 99 9 chr9 1124643 1124855 -116737772 - MIR SINE MIR -18 244 14 198 103 0 0 chr9 1124875 1124904 -116737723 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 230 118 0 0 chr9 1125083 1125117 -116737510 + Charlie8 DNA MER1_type 1374 1407 -1010 323 333 21 0 chr9 1125284 1125380 -116737247 - L3 LINE CR1 -54 1523 1426 300 376 68 14 chr9 1125611 1125832 -116736795 - L3 LINE CR1 -480 1097 865 687 256 23 6 chr9 1126938 1127114 -116735513 + MIR SINE MIR 13 191 -71 356 266 7 65 chr9 1128832 1128986 -116733641 + L1ME4a LINE L1 5571 5715 -406 237 75 25 25 chr9 1129049 1129089 -116733538 + L1ME4a LINE L1 5725 5764 -357 301 312 27 32 chr9 1129115 1129301 -116733326 + L1ME4a LINE L1 5861 6045 -76 368 314 50 0 chr9 1130804 1130925 -116731702 - MIR3 SINE MIR -41 167 41 1917 180 0 0 chr9 1131572 1131877 -116730750 - AluJo SINE Alu -7 305 1 313 234 49 12 chr9 1132271 1132376 -116730251 - MIR SINE MIR -79 129 20 1152 153 0 0 chr9 1132621 1132797 -116729830 + L1PA16 LINE L1 5980 6155 -11 486 259 94 18 chr9 1132822 1132992 -116729635 + MIR SINE MIR 59 241 -21 262 318 116 8 chr9 1133226 1133355 -116729272 - MIR SINE MIR -71 191 49 312 320 17 10 chr9 1134111 1134283 -116728344 + GA-rich Low_complexity Low_complexity 2 293 0 653 281 69 16 chr9 1135833 1136139 -116726488 - LTR33 LTR ERVL -20 501 180 754 22 0 0 chr9 1136139 1136230 -116726397 - L1PA5 LINE L1 -1322 4824 4734 7649 51 0 23 chr9 1136230 1137575 -116725052 + L1PA5 LINE L1 4831 6154 0 580 214 115 50 chr9 1137576 1137758 -116724869 - LTR33 LTR ERVL -327 194 1 882 133 0 8 chr9 1139433 1139561 -116723066 + AluJb SINE Alu 1 127 -185 293 296 125 6 chr9 1140578 1140754 -116721873 - L1ME LINE L1 -531 5590 5394 558 108 26 25 chr9 1140982 1141173 -116721454 - L1MA4A LINE L1 -24 6279 6028 288 277 40 0 chr9 1141406 1141507 -116721120 - LTR67 LTR ERVL -2 555 451 2742 146 5 34 chr9 1141893 1142337 -116720290 - Tigger2a DNA MER2_type -2 432 2 388 297 55 25 chr9 1142416 1142827 -116719800 - L1ME LINE L1 -1445 4701 4274 25 75 0 0 chr9 1144867 1144920 -116717707 + AT_rich Low_complexity Low_complexity 1 53 0 1227 269 63 41 chr9 1146099 1146419 -116716208 - LTR33 LTR ERVL -2 519 184 195 42 0 0 chr9 1146419 1146443 -116716184 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1227 269 63 41 chr9 1146443 1146583 -116716044 - LTR33 LTR ERVL -337 184 49 1448 175 126 7 chr9 1147126 1147395 -116715232 - AluJo SINE Alu -1 301 1 477 321 134 13 chr9 1147530 1147754 -116714873 - MIR SINE MIR -1 261 11 22 0 0 0 chr9 1147865 1147887 -116714740 + AT_rich Low_complexity Low_complexity 1 22 0 1853 167 49 71 chr9 1148553 1149020 -116713607 - LTR16A1 LTR ERVL 0 457 1 1834 213 3 42 chr9 1149043 1149423 -116713204 + MLT1A1 LTR MaLR 1 365 0 227 269 30 15 chr9 1149523 1149590 -116713037 - MER112 DNA MER1_type -189 71 4 2024 123 0 7 chr9 1150286 1150602 -116712025 - AluSx SINE Alu 0 314 1 43715 34 23 1 chr9 1150652 1156673 -116705954 + L1PA2 LINE L1 1 6155 0 189 74 0 0 chr9 1156701 1156728 -116705899 + (A)n Simple_repeat Simple_repeat 1 27 0 734 279 169 24 chr9 1156731 1156862 -116705765 + L1ME3A LINE L1 4015 4126 -2020 210 91 0 0 chr9 1156862 1156895 -116705732 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 734 279 169 24 chr9 1156895 1157508 -116705119 + L1ME3A LINE L1 4126 4867 -1279 528 272 36 15 chr9 1157592 1157787 -116704840 + L1ME3A LINE L1 5749 5947 -223 273 249 85 58 chr9 1157860 1158049 -116704578 + L1ME3A LINE L1 5963 6156 -14 480 190 0 0 chr9 1160091 1160170 -116702457 - FLAM_A SINE Alu -43 99 21 658 276 117 26 chr9 1160252 1160603 -116702024 - L1ME4a LINE L1 -218 5903 5521 22 0 0 0 chr9 1160651 1160673 -116701954 + AT_rich Low_complexity Low_complexity 1 22 0 404 260 164 71 chr9 1161021 1161567 -116701060 - L1ME4a LINE L1 -34 6087 5462 1775 170 0 16 chr9 1161567 1161884 -116700743 - AluJb SINE Alu 0 312 1 404 260 164 71 chr9 1161884 1162059 -116700568 - L1ME4a LINE L1 -659 5462 5305 21 0 0 0 chr9 1162372 1162393 -116700234 + AT_rich Low_complexity Low_complexity 1 21 0 392 289 133 8 chr9 1162691 1162819 -116699808 + MLT1J LTR MaLR 9 152 -359 593 231 8 0 chr9 1162918 1163035 -116699592 + LTR16A1 LTR ERVL 3 120 -337 334 278 44 0 chr9 1163071 1163161 -116699466 + MLT1J LTR MaLR 292 385 -126 2591 187 18 66 chr9 1163432 1163591 -116699036 - LTR27 LTR ERV1 0 636 471 1961 168 60 26 chr9 1163591 1163942 -116698685 - THE1B LTR MaLR -1 363 1 2591 187 18 66 chr9 1163942 1164449 -116698178 - LTR27 LTR ERV1 -165 471 2 224 264 36 45 chr9 1164457 1164567 -116698060 + MIR SINE MIR 100 208 -54 409 296 41 21 chr9 1165062 1165266 -116697361 - ERVL LTR ERVL -1923 3562 3357 255 323 40 0 chr9 1165420 1165519 -116697108 - ERVL LTR ERVL -2584 3180 3078 1059 232 147 4 chr9 1165596 1165868 -116696759 + LTR16C LTR ERVL 79 389 -102 312 235 0 49 chr9 1165893 1165995 -116696632 - L1MC4a LINE L1 -1860 5948 5852 627 125 0 0 chr9 1166027 1166123 -116696504 - L1PA16 LINE L1 0 6166 6071 1018 166 11 6 chr9 1166188 1166369 -116696258 - L1PA15 LINE L1 -100 6065 5884 300 191 16 0 chr9 1166369 1166432 -116696195 + LTR16C LTR ERVL 428 491 0 987 310 82 43 chr9 1166448 1167624 -116695003 - ERVL LTR ERVL -2462 3023 1787 2011 136 10 3 chr9 1167699 1167993 -116694634 - AluSg SINE Alu -14 296 1 1309 180 18 9 chr9 1168681 1168903 -116693724 + MSTB1 LTR MaLR 5 228 -204 529 299 48 11 chr9 1168907 1169094 -116693533 - MIR SINE MIR -19 243 50 479 343 94 9 chr9 1169551 1169784 -116692843 + MIR SINE MIR 10 262 0 2093 130 10 0 chr9 1170685 1170984 -116691643 + AluSq SINE Alu 1 302 -11 24 32 0 0 chr9 1171047 1171078 -116691549 + AT_rich Low_complexity Low_complexity 1 31 0 2171 115 138 26 chr9 1171503 1171887 -116690740 + MSTC LTR MaLR 2 428 0 357 294 39 39 chr9 1171969 1172149 -116690478 + MLT1J LTR MaLR 1 180 -331 2676 49 0 0 chr9 1172201 1172566 -116690061 + L1PA5 LINE L1 5812 6176 0 239 177 38 51 chr9 1172726 1172805 -116689822 + MLT1J LTR MaLR 403 480 -31 1906 171 11 22 chr9 1172923 1173291 -116689336 + MLT1A1 LTR MaLR 1 364 -1 192 343 0 0 chr9 1174325 1174392 -116688235 + MIR SINE MIR 182 248 -14 371 278 28 0 chr9 1174624 1174732 -116687895 + MIR SINE MIR 3 113 -149 225 139 0 0 chr9 1174787 1174823 -116687804 - L1P4 LINE L1 -532 5642 5607 375 269 156 6 chr9 1174826 1174986 -116687641 + MIR SINE MIR 79 262 0 207 0 0 0 chr9 1175896 1175919 -116686708 + (TG)n Simple_repeat Simple_repeat 2 24 0 33 56 0 0 chr9 1175919 1175973 -116686654 + AT_rich Low_complexity Low_complexity 1 54 0 452 72 14 0 chr9 1175974 1176043 -116686584 + (TA)n Simple_repeat Simple_repeat 1 70 0 292 292 36 105 chr9 1177667 1177886 -116684741 + MIR SINE MIR 48 251 -11 391 326 62 26 chr9 1177899 1178126 -116684501 + MIR SINE MIR 18 252 -10 228 233 0 0 chr9 1178775 1178818 -116683809 + polypurine Low_complexity Low_complexity 2 44 0 485 267 2 42 chr9 1179473 1179616 -116683011 + MIR SINE MIR 53 190 -68 507 246 266 10 chr9 1181300 1181503 -116681124 + MIR SINE MIR 3 257 -5 864 221 57 12 chr9 1181873 1182117 -116680510 - L1ME2 LINE L1 -199 5965 5711 304 281 0 12 chr9 1182973 1183055 -116679572 + MER81 DNA DNA 17 97 -17 291 218 173 64 chr9 1183268 1183378 -116679249 - MIR3 SINE MIR -47 161 40 5428 142 30 25 chr9 1183450 1185146 -116677481 + L1MA4 LINE L1 4563 6281 -19 218 273 18 0 chr9 1185185 1185240 -116677387 - MER5A DNA MER1_type -98 91 36 301 275 171 31 chr9 1189414 1189568 -116673059 + MIR SINE MIR 5 193 -69 366 23 0 0 chr9 1189568 1189611 -116673016 + (TG)n Simple_repeat Simple_repeat 2 44 0 301 275 171 31 chr9 1189611 1189649 -116672978 + MIR SINE MIR 193 224 -38 241 122 24 0 chr9 1189695 1189736 -116672891 - L2 LINE L2 -4 3309 3268 425 264 86 6 chr9 1189737 1189900 -116672727 - L2 LINE L2 -1907 1407 1232 282 239 54 33 chr9 1190419 1190511 -116672116 - MLT1H LTR MaLR -16 533 433 383 311 146 0 chr9 1191295 1191446 -116671181 - L3 LINE CR1 -8 1569 1397 210 239 103 65 chr9 1192560 1192715 -116669912 - L3 LINE CR1 -381 1196 1036 296 24 0 24 chr9 1193791 1193833 -116668794 + (TA)n Simple_repeat Simple_repeat 2 42 0 764 332 118 13 chr9 1193836 1194546 -116668081 + ERVL LTR ERVL 3305 4089 -1675 283 341 90 20 chr9 1194575 1194918 -116667709 + ERVL LTR ERVL 4296 4662 -992 495 347 46 28 chr9 1194964 1195422 -116667205 + ERVL LTR ERVL 4770 5235 -529 841 251 132 30 chr9 1195725 1196128 -116666499 + LTR16A1 LTR ERVL 14 457 0 263 267 11 0 chr9 1196263 1196353 -116666274 - LTR16A1 LTR ERVL -339 118 28 257 233 0 12 chr9 1196801 1196887 -116665740 + CT-rich Low_complexity Low_complexity 2 86 0 368 300 130 34 chr9 1198668 1198896 -116663731 - MIR SINE MIR 0 262 3 2168 125 0 0 chr9 1198942 1199231 -116663396 - AluSx SINE Alu -23 289 1 224 402 39 0 chr9 1199383 1199485 -116663142 - L2 LINE L2 -16 3256 3151 215 100 0 25 chr9 1201319 1201359 -116661268 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 4608 170 6 30 chr9 1201597 1202861 -116659766 + L1MB3 LINE L1 4903 6138 -45 1226 188 62 62 chr9 1202861 1202937 -116659690 + AluJo SINE Alu 44 119 -193 180 0 0 0 chr9 1202937 1202957 -116659670 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1226 188 62 62 chr9 1202957 1203136 -116659491 + AluJo SINE Alu 118 299 -13 331 131 0 0 chr9 1203136 1203197 -116659430 + L1MB2 LINE L1 6111 6171 0 1001 237 113 47 chr9 1203999 1204505 -116658122 - L1ME4a LINE L1 -17 6104 5566 317 289 26 46 chr9 1204679 1204831 -116657796 - L1ME4a LINE L1 -786 5360 5212 1169 167 8 71 chr9 1204906 1205158 -116657469 + MER46A DNA MER2_type 1 236 0 1233 160 60 14 chr9 1205298 1205357 -116657270 - L1MA7 LINE L1 -6 6285 6230 318 26 0 0 chr9 1205357 1205396 -116657231 + (CA)n Simple_repeat Simple_repeat 2 40 0 1233 160 60 14 chr9 1205396 1205617 -116657010 - L1MA7 LINE L1 -61 6230 5992 455 265 87 99 chr9 1206046 1206215 -116656412 - HAL1 LINE L1 -1 2506 2336 2447 45 0 19 chr9 1206215 1206524 -116656103 - AluY SINE Alu -8 303 1 455 265 87 99 chr9 1206524 1206758 -116655869 - HAL1 LINE L1 -171 2336 2108 1914 195 29 43 chr9 1206921 1207413 -116655214 - HAL1 LINE L1 -1959 548 64 26 30 0 0 chr9 1207624 1207657 -116654970 + AT_rich Low_complexity Low_complexity 1 33 0 2381 90 0 0 chr9 1208379 1208680 -116653947 - AluY SINE Alu -10 301 1 433 301 78 41 chr9 1208778 1208997 -116653630 - MIR SINE MIR -16 246 20 241 183 14 28 chr9 1209414 1209485 -116653142 + GA-rich Low_complexity Low_complexity 2 71 0 258 321 71 18 chr9 1209594 1209706 -116652921 + L2 LINE L2 3196 3313 0 208 121 0 0 chr9 1210662 1210695 -116651932 + (CA)n Simple_repeat Simple_repeat 2 34 0 343 96 0 0 chr9 1212990 1213042 -116649585 + L1 LINE L1 5197 5248 -898 996 127 6 11 chr9 1213710 1213891 -116648736 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 584 230 58 40 chr9 1214413 1214587 -116648040 + MER5B DNA MER1_type 2 178 0 261 268 16 71 chr9 1215172 1215299 -116647328 - MER5B DNA MER1_type 0 178 59 554 217 118 80 chr9 1215340 1215719 -116646908 + L1MC4a LINE L1 5523 5823 -298 243 309 18 36 chr9 1215739 1215849 -116646778 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 1516 206 22 43 chr9 1216124 1216493 -116646134 + MLT1A1 LTR MaLR 3 363 -2 273 292 75 50 chr9 1216766 1216927 -116645700 + MIR SINE MIR 70 234 -28 29 78 0 0 chr9 1217560 1217624 -116645003 + AT_rich Low_complexity Low_complexity 1 64 0 1224 189 45 89 chr9 1218098 1218480 -116644147 - MLT1A1 LTR MaLR 0 365 1 694 300 27 5 chr9 1218653 1218873 -116643754 - MIR SINE MIR -13 249 25 1898 161 6 3 chr9 1219033 1219344 -116643283 - AluJb SINE Alu 0 312 1 234 237 34 0 chr9 1222073 1222132 -116640495 + MIR3 SINE MIR 97 157 -51 463 175 88 0 chr9 1222218 1222332 -116640295 - Charlie8 DNA MER1_type -2257 160 37 536 265 21 48 chr9 1222341 1222530 -116640097 + L1MEc LINE L1 36 219 -6177 1932 152 7 0 chr9 1222573 1222869 -116639758 + AluSx SINE Alu 1 298 -14 5646 147 27 6 chr9 1223070 1224968 -116637659 - L1MA8 LINE L1 -137 6154 4213 1171 280 71 32 chr9 1225043 1225639 -116636988 + L2 LINE L2 2694 3313 0 15356 51 2 1 chr9 1226502 1229214 -116633413 - L1PA8 LINE L1 -6 6166 3441 10780 83 21 1 chr9 1229214 1230804 -116631823 + L1P LINE L1 2856 4478 -1668 470 276 37 22 chr9 1230965 1231099 -116631528 - L2 LINE L2 -1 3271 3136 195 316 76 59 chr9 1231387 1231624 -116631003 - L2 LINE L2 -485 2829 2589 259 266 141 0 chr9 1231632 1231760 -116630867 - MER117 DNA MER1_type -1 196 51 204 271 121 72 chr9 1231865 1232072 -116630555 - L2 LINE L2 -791 2523 2307 190 238 57 76 chr9 1232159 1232264 -116630363 - L2 LINE L2 -1017 2297 2195 478 206 46 69 chr9 1233135 1233674 -116628953 + L1ME1 LINE L1 5929 6099 -67 1929 148 107 3 chr9 1233288 1233653 -116628974 - MER57A LTR ERV1 0 403 1 319 152 22 196 chr9 1233653 1233770 -116628857 + L1MA10 LINE L1 6190 6326 -8 441 54 0 0 chr9 1233774 1233830 -116628797 + (CA)n Simple_repeat Simple_repeat 2 57 0 540 313 19 6 chr9 1235772 1235932 -116626695 - MIR SINE MIR -23 239 78 515 239 67 35 chr9 1236066 1236321 -116626306 + L1ME3A LINE L1 4774 5036 -1110 719 279 146 18 chr9 1236494 1237103 -116625524 + L1ME3A LINE L1 5258 5944 -226 312 304 87 36 chr9 1237148 1237286 -116625341 + L1ME3A LINE L1 5953 6097 -73 979 248 94 46 chr9 1238700 1239135 -116623492 - MLT1C LTR MaLR -8 459 4 335 302 86 17 chr9 1240337 1240453 -116622174 + L2 LINE L2 3141 3264 -8 343 307 69 35 chr9 1240540 1240830 -116621797 - LTR16C LTR ERVL 0 491 192 889 178 28 134 chr9 1241399 1241866 -116620761 + MLT1B LTR MaLR 1 444 -23 238 150 0 0 chr9 1241892 1241932 -116620695 + MLT1B LTR MaLR 349 388 -2 197 317 10 109 chr9 1241993 1242094 -116620533 + MIR SINE MIR 21 111 -97 432 308 83 0 chr9 1242960 1243080 -116619547 + MIR SINE MIR 17 146 -62 270 308 175 21 chr9 1243116 1243259 -116619368 + MIR SINE MIR 81 245 -17 2133 127 0 0 chr9 1243601 1243884 -116618743 - AluSx SINE Alu -27 285 3 302 325 25 44 chr9 1244494 1244654 -116617973 - MIR SINE MIR 0 262 106 487 210 70 38 chr9 1244852 1245009 -116617618 - MER112 DNA MER1_type -6 254 93 42 15 0 44 chr9 1245011 1245079 -116617548 + AT_rich Low_complexity Low_complexity 1 65 0 338 183 61 12 chr9 1245079 1245161 -116617466 - MER112 DNA MER1_type -174 86 1 272 314 97 57 chr9 1245277 1245649 -116616978 - L2 LINE L2 -412 2902 2516 250 273 281 7 chr9 1247369 1247508 -116615119 - MIR SINE MIR -27 235 59 183 323 71 0 chr9 1247613 1247712 -116614915 - L3b LINE CR1 -242 1341 1236 227 299 0 52 chr9 1249851 1249928 -116612699 - L2 LINE L2 0 3313 3241 1803 150 58 0 chr9 1251506 1251799 -116610828 - AluSx SINE Alu -2 310 1 535 330 42 0 chr9 1251825 1252016 -116610611 - MIR SINE MIR -8 254 56 503 256 173 0 chr9 1252857 1252990 -116609637 + MER5A DNA MER1_type 32 187 -2 400 168 0 161 chr9 1253796 1253814 -116608813 + L1M2 LINE L1 5407 5426 -865 2185 117 3 13 chr9 1253814 1254148 -116608479 + AluSx SINE Alu 1 312 0 400 168 0 161 chr9 1254148 1254174 -116608453 + L1M2 LINE L1 5426 5455 -836 1852 156 12 23 chr9 1254174 1254520 -116608107 + L1PB4 LINE L1 5815 6156 0 400 168 0 161 chr9 1254520 1254611 -116608016 + L1M2 LINE L1 5455 5521 -770 502 245 129 31 chr9 1254632 1254795 -116607832 - L2 LINE L2 0 3313 3135 191 382 83 0 chr9 1254939 1255083 -116607544 + MIR3 SINE MIR 38 193 -15 1566 228 52 29 chr9 1255241 1255726 -116606901 + MLT1D LTR MaLR 6 386 -4 303 212 71 12 chr9 1255728 1255813 -116606814 + MLT1I LTR MaLR 61 150 -259 2126 185 15 37 chr9 1256023 1256487 -116606140 - MLT2B1 LTR ERVL -64 456 3 248 281 53 35 chr9 1256492 1256606 -116606021 + MLT1I LTR MaLR 256 371 -38 248 288 91 23 chr9 1256808 1256940 -116605687 + MER103 DNA DNA 2 142 -24 891 250 29 16 chr9 1258976 1259220 -116603407 + MLT1H1 LTR MaLR 307 553 -2 192 167 0 0 chr9 1259457 1259487 -116603140 + L2 LINE L2 3233 3262 -51 731 272 83 48 chr9 1259496 1259954 -116602673 - L2 LINE L2 -117 3196 2719 673 167 233 17 chr9 1262021 1262201 -116600426 + MER20 DNA MER1_type 1 219 0 4391 155 37 34 chr9 1262202 1263092 -116599535 - MER54A LTR ERVL -1 900 8 243 61 0 0 chr9 1263149 1263182 -116599445 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 187 316 26 26 chr9 1263264 1263340 -116599287 + L2 LINE L2 2712 2787 -527 431 297 116 7 chr9 1263458 1263613 -116599014 + MIR SINE MIR 10 181 -81 182 301 86 49 chr9 1264246 1264409 -116598218 + L2 LINE L2 2841 3009 -263 247 286 163 7 chr9 1264896 1265043 -116597584 + MIR SINE MIR 93 262 0 479 307 49 13 chr9 1265800 1266025 -116596602 - Charlie8 DNA MER1_type -2184 233 1 2196 115 36 39 chr9 1266067 1266431 -116596196 + THE1B LTR MaLR 1 363 -1 274 284 7 97 chr9 1267068 1267223 -116595404 + MLT1J LTR MaLR 136 276 -235 2327 289 42 24 chr9 1267225 1268234 -116594393 - MER69B DNA AcHobo -199 1027 1 674 321 91 19 chr9 1268536 1269010 -116593617 - MLT1G1 LTR MaLR -13 582 75 196 279 0 0 chr9 1269117 1269160 -116593467 + L2 LINE L2 3261 3303 -10 1761 179 3 38 chr9 1269250 1269569 -116593058 + AluJo SINE Alu 1 308 -4 264 261 43 54 chr9 1270631 1270723 -116591904 - L3 LINE CR1 -12 1565 1475 3476 265 106 35 chr9 1272771 1272935 -116589692 - L2 LINE L2 0 3313 3162 2333 163 89 0 chr9 1272935 1273153 -116589474 - MSTA LTR MaLR 0 428 231 273 57 0 0 chr9 1273153 1273188 -116589439 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2333 163 89 0 chr9 1273188 1273362 -116589265 - MSTA LTR MaLR -197 231 1 3476 265 106 35 chr9 1273362 1274865 -116587762 - L2 LINE L2 -151 3162 1518 222 37 0 0 chr9 1274912 1274939 -116587688 + (TG)n Simple_repeat Simple_repeat 2 28 0 184 344 122 28 chr9 1275304 1275696 -116586931 + L2 LINE L2 2829 3257 -15 493 263 73 39 chr9 1275713 1275918 -116586709 + HAL1 LINE L1 1 212 -2295 2543 264 145 57 chr9 1275986 1276209 -116586418 + HAL1 LINE L1 602 804 -1703 1580 170 7 7 chr9 1276209 1276479 -116586148 - L1PA16 LINE L1 0 6166 5897 2543 264 145 57 chr9 1276479 1277991 -116584636 + HAL1 LINE L1 804 2491 -16 324 272 120 27 chr9 1279242 1279379 -116583248 - MIR3 SINE MIR -23 185 33 1076 316 74 20 chr9 1279887 1280374 -116582253 - LTR33 LTR ERVL -8 513 1 1741 216 48 11 chr9 1280450 1280802 -116581825 + MLT1A1 LTR MaLR 1 365 0 4343 145 2 3 chr9 1281435 1282071 -116580556 - MER41B LTR ERV1 0 635 1 473 151 151 0 chr9 1282175 1282281 -116580346 - MIR SINE MIR -85 177 56 268 290 107 30 chr9 1282361 1282492 -116580135 + MIR SINE MIR 117 257 -5 * 630 256 113 10 chr9 1282482 1282677 -116579950 + MIR SINE MIR 11 225 -37 1039 313 35 28 chr9 1282914 1283314 -116579313 + LTR16A LTR ERVL 26 428 -22 5611 301 70 57 chr9 1283326 1284963 -116577664 + HERV16 LTR ERVL 1 1830 -3166 742 181 7 29 chr9 1284963 1285101 -116577526 + FLAM_A SINE Alu 8 142 0 5611 301 70 57 chr9 1285101 1286377 -116576250 + HERV16 LTR ERVL 1830 3089 -1907 858 286 107 39 chr9 1286525 1287214 -116575413 + HERV16 LTR ERVL 3328 4063 -1701 891 350 68 29 chr9 1287551 1288425 -116574202 + HERV16 LTR ERVL 4419 5326 -328 1031 324 58 15 chr9 1288592 1289002 -116573625 + LTR16A LTR ERVL 23 450 0 331 338 60 25 chr9 1289328 1289529 -116573098 - MIR SINE MIR -26 236 29 1218 231 86 52 chr9 1291125 1291510 -116571117 + MER93a LTR ERV1 1 398 -4 656 225 96 28 chr9 1292537 1292715 -116569912 + MER58C DNA MER1_type 26 215 0 487 281 97 17 chr9 1292718 1292956 -116569671 + MIR SINE MIR 5 261 -1 365 254 21 14 chr9 1292978 1293120 -116569507 + (TA)n Simple_repeat Simple_repeat 1 143 0 216 0 0 0 chr9 1293222 1293246 -116569381 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 398 25 88 0 chr9 1293245 1293325 -116569302 + (TA)n Simple_repeat Simple_repeat 2 88 0 2460 76 0 0 chr9 1294731 1295033 -116567594 + AluSc SINE Alu 1 302 -7 3498 124 24 10 chr9 1295037 1295546 -116567081 - L1PA15 LINE L1 -13 6152 5637 4307 155 65 21 chr9 1295550 1296314 -116566313 - L1MA7 LINE L1 0 6291 5485 2106 122 10 0 chr9 1296314 1296609 -116566018 - AluSp SINE Alu -13 300 3 4307 155 65 21 chr9 1296609 1296687 -116565940 - L1MA7 LINE L1 -806 5485 5412 1350 152 5 9 chr9 1296758 1296968 -116565659 + AluJb SINE Alu 86 294 -18 22 0 0 0 chr9 1296973 1296995 -116565632 + AT_rich Low_complexity Low_complexity 1 22 0 243 205 0 121 chr9 1297272 1297355 -116565272 + LTR67 LTR ERVL 468 540 -17 206 268 56 28 chr9 1297893 1297964 -116564663 + L2 LINE L2 3183 3255 -17 26 0 0 0 chr9 1298718 1298744 -116563883 + AT_rich Low_complexity Low_complexity 1 26 0 30930 114 20 57 chr9 1298794 1305197 -116557430 + L1PA8 LINE L1 12 6166 -6 1551 191 150 24 chr9 1305727 1306140 -116556487 - MLT1C LTR MaLR 0 467 3 319 308 51 51 chr9 1306584 1306740 -116555887 + MER5A DNA MER1_type 33 188 -1 5549 195 38 1 chr9 1308169 1309172 -116553455 - MER45B DNA AcHobo 0 1040 1 227 313 88 0 chr9 1309290 1309370 -116553257 + L2 LINE L2 3006 3092 -221 686 211 0 0 chr9 1309416 1309539 -116553088 - MER5A DNA MER1_type -66 123 1 359 321 60 28 chr9 1309539 1309752 -116552875 + L2 LINE L2 3094 3313 0 1771 191 38 24 chr9 1310242 1310614 -116552013 - MLT1B LTR MaLR -6 384 8 204 314 0 29 chr9 1310620 1310690 -116551937 - MER5A DNA MER1_type -103 86 19 221 56 0 28 chr9 1312993 1313029 -116549598 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 16372 31 1 6 chr9 1313029 1313802 -116548825 - L1PA3 LINE L1 -24 6131 5356 2892 10 0 0 chr9 1313802 1314112 -116548515 - AluYa5 SINE Alu -1 310 1 16372 31 1 6 chr9 1314112 1316035 -116546592 - L1PA3 LINE L1 -799 5356 3441 4538 37 0 3 chr9 1316026 1316593 -116546034 + L1PA3 LINE L1 2848 3412 -2734 * 327 322 49 63 chr9 1316835 1316978 -116545649 - L2 LINE L2 -3 3269 3129 1213 122 0 0 chr9 1317980 1318144 -116544483 + AluSg/x SINE Alu 131 294 -16 250 200 57 43 chr9 1318361 1318431 -116544196 - MIR SINE MIR -9 253 183 236 237 158 26 chr9 1318529 1318643 -116543984 + LTR33 LTR ERVL 116 244 -277 775 259 138 50 chr9 1318814 1319134 -116543493 - MLT1J LTR MaLR -102 409 62 318 276 150 8 chr9 1319220 1319347 -116543280 - MIR SINE MIR -93 169 25 260 325 43 17 chr9 1319646 1319763 -116542864 + MIR SINE MIR 16 135 -73 221 286 25 99 chr9 1321700 1321861 -116540766 + L3 LINE CR1 1139 1287 -290 199 315 69 81 chr9 1321857 1322032 -116540595 + L2 LINE L2 3023 3230 -83 * 23 54 0 0 chr9 1322032 1322069 -116540558 + AT_rich Low_complexity Low_complexity 1 37 0 199 315 69 81 chr9 1322069 1322152 -116540475 + L2 LINE L2 3230 3313 0 22 0 0 0 chr9 1324222 1324244 -116538383 + AT_rich Low_complexity Low_complexity 1 22 0 261 320 67 5 chr9 1325574 1325768 -116536859 - L1MEd LINE L1 -4915 1204 999 826 164 15 0 chr9 1325775 1325909 -116536718 - FRAM SINE Alu -3 173 38 283 352 141 12 chr9 1327060 1327316 -116535311 + L2 LINE L2 2982 3270 -2 7300 40 28 0 chr9 1327602 1328915 -116533712 - L1PA4 LINE L1 0 6155 4824 12067 72 15 0 chr9 1328915 1330551 -116532076 - L1P LINE L1 -4485 1661 1 338 245 71 0 chr9 1331303 1331401 -116531226 - MIR3 SINE MIR -6 202 98 43 47 0 0 chr9 1332544 1332608 -116530019 + AT_rich Low_complexity Low_complexity 1 64 0 327 270 155 34 chr9 1333080 1333228 -116529399 + MIR SINE MIR 90 255 -7 246 182 0 0 chr9 1334492 1334536 -116528091 - MER66B LTR ERV1 -142 344 301 1885 251 45 38 chr9 1335937 1336361 -116526266 - HsTC2a DNA Tc2 -1157 743 310 1668 187 33 3 chr9 1336361 1336661 -116525966 - AluJo SINE Alu -3 309 1 1885 251 45 38 chr9 1336661 1336948 -116525679 - HsTC2a DNA Tc2 -1590 310 27 262 299 46 0 chr9 1336989 1337076 -116525551 - L2 LINE L2 -231 3041 2951 326 340 70 22 chr9 1337761 1337946 -116524681 - L2 LINE L2 -406 2908 2715 2121 125 0 0 chr9 1338416 1338712 -116523915 + AluSx SINE Alu 1 296 -16 2110 126 3 0 chr9 1338923 1339224 -116523403 - AluSc SINE Alu -7 302 1 779 249 120 34 chr9 1339333 1339566 -116523061 - MIR SINE MIR -1 261 9 187 31 62 0 chr9 1341392 1341424 -116521203 + A-rich Low_complexity Low_complexity 2 35 0 495 311 119 11 chr9 1341534 1341711 -116520916 + MIR SINE MIR 23 218 -44 2085 128 0 13 chr9 1342521 1342825 -116519802 - AluSx SINE Alu -10 302 3 2364 101 3 0 chr9 1342966 1343274 -116519353 + AluSc SINE Alu 1 309 0 530 277 42 45 chr9 1343855 1344144 -116518483 + Charlie7 DNA MER1_type 1245 1532 -1080 1000 245 61 114 chr9 1344697 1344837 -116517790 - LTR16C LTR ERVL -2 489 343 2255 98 3 0 chr9 1344837 1345133 -116517494 + AluSx SINE Alu 1 297 -15 1000 245 61 114 chr9 1345133 1345481 -116517146 - LTR16C LTR ERVL -148 343 27 978 304 122 29 chr9 1345815 1346298 -116516329 + MLT1G1 LTR MaLR 1 528 -67 417 177 124 9 chr9 1346427 1346540 -116516087 + L1MD3 LINE L1 7670 7795 -200 413 352 82 15 chr9 1346778 1346974 -116515653 - MIR SINE MIR -52 210 2 225 224 40 7 chr9 1347162 1347317 -116515310 + (TA)n Simple_repeat Simple_repeat 1 160 0 2105 189 88 24 chr9 1347455 1348009 -116514618 - L1MD3 LINE L1 -10 7985 7396 409 189 14 0 chr9 1348009 1348083 -116514544 - MLT1F1 LTR MaLR -457 110 36 2009 138 3 3 chr9 1348449 1348746 -116513881 - AluJb SINE Alu -15 297 1 236 223 53 0 chr9 1348817 1348911 -116513716 + (TA)n Simple_repeat Simple_repeat 1 99 0 465 311 53 24 chr9 1348939 1349148 -116513479 - MIR SINE MIR -1 261 47 2705 94 13 5 chr9 1349448 1349820 -116512807 - THE1C LTR MaLR 0 375 1 465 62 0 0 chr9 1350078 1350143 -116512484 + (GA)n Simple_repeat Simple_repeat 2 66 0 224 364 91 8 chr9 1352096 1352228 -116510399 + MIR3 SINE MIR 60 202 -6 203 286 76 59 chr9 1353516 1353635 -116508992 - L3 LINE CR1 -31 1546 1426 432 274 35 30 chr9 1353662 1353863 -116508764 - Charlie8 DNA MER1_type -9 2408 2207 913 239 85 96 chr9 1353909 1354357 -116508270 - Charlie8 DNA MER1_type -1973 444 2 1181 206 0 26 chr9 1354367 1354595 -116508032 + MER58A DNA MER1_type 2 223 -1 262 267 13 13 chr9 1354631 1354706 -116507921 - L3 LINE CR1 -180 1397 1323 612 327 88 22 chr9 1355100 1355552 -116507075 + L2 LINE L2 2832 3313 0 351 277 119 0 chr9 1355908 1356009 -116506618 - MIR SINE MIR -62 146 34 6506 83 3 28 chr9 1356116 1356933 -116505694 - L1PA10 LINE L1 0 6168 5332 2274 103 0 3 chr9 1356933 1357233 -116505394 - AluY SINE Alu -12 299 1 6506 83 3 28 chr9 1357233 1358336 -116504291 - L1PA10 LINE L1 -836 5332 4284 1117 154 18 0 chr9 1358343 1358512 -116504115 + AluSg/x SINE Alu 132 303 -9 909 225 22 13 chr9 1358515 1358746 -116503881 + L1ME1 LINE L1 5891 6123 -43 202 319 26 73 chr9 1358815 1359007 -116503620 - MIR SINE MIR -57 205 19 741 273 80 8 chr9 1359118 1359356 -116503271 - MIR SINE MIR 0 262 8 831 249 131 24 chr9 1360057 1360386 -116502241 - L2 LINE L2 -1 3312 2949 650 378 114 0 chr9 1360533 1360927 -116501700 - L3 LINE CR1 -1104 473 35 332 285 115 6 chr9 1361011 1361176 -116501451 - L1ME4a LINE L1 -4 6117 5935 266 247 55 0 chr9 1362077 1362150 -116500477 + L2 LINE L2 3197 3273 -40 1038 315 57 25 chr9 1362194 1362670 -116499957 - L2 LINE L2 0 3313 2823 980 235 111 60 chr9 1362667 1363080 -116499547 - L2 LINE L2 -876 2438 2005 * 241 313 107 0 chr9 1363855 1363967 -116498660 - MIR SINE MIR -70 192 69 239 222 0 0 chr9 1364640 1364703 -116497924 - LTR66 LTR ERVL -149 461 399 186 43 0 0 chr9 1364711 1364734 -116497893 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 27 29 0 0 chr9 1365465 1365499 -116497128 + AT_rich Low_complexity Low_complexity 1 34 0 351 362 74 23 chr9 1366320 1366804 -116495823 - L2 LINE L2 -914 2400 1892 204 367 22 11 chr9 1367139 1367229 -116495398 + L2 LINE L2 3168 3258 -14 260 333 55 56 chr9 1367269 1367470 -116495157 - MIR SINE MIR -5 203 1 468 286 64 71 chr9 1368163 1368446 -116494181 + L2 LINE L2 2992 3272 0 470 287 6 43 chr9 1368563 1368727 -116493900 - MIR SINE MIR -40 222 65 296 188 14 0 chr9 1368806 1368875 -116493752 + CT-rich Low_complexity Low_complexity 4 73 0 262 306 41 10 chr9 1368907 1369005 -116493622 + MIR SINE MIR 54 154 -108 424 137 1 35 chr9 1369093 1369182 -116493445 - L1MC3 LINE L1 -15 7770 6238 508 261 113 54 chr9 1369185 1369388 -116493239 - MIR SINE MIR -46 216 2 1577 201 35 32 chr9 1370595 1370968 -116491659 + MLT1A2 LTR MaLR 1 374 0 21 57 0 0 chr9 1372757 1372792 -116489835 + AT_rich Low_complexity Low_complexity 1 35 0 1000 294 70 25 chr9 1372882 1373610 -116489017 + HAL1b LINE L1 89 849 -499 343 212 26 26 chr9 1373638 1373751 -116488876 - HAL1b LINE L1 -341 1007 895 1434 208 91 32 chr9 1373760 1374168 -116488459 - Charlie4a DNA MER1_type -63 445 14 1537 174 68 50 chr9 1376133 1376455 -116486172 + MLT2D LTR ERVL 73 480 -35 414 0 0 0 chr9 1376455 1376501 -116486126 + (CA)n Simple_repeat Simple_repeat 1 46 0 1537 174 68 50 chr9 1376501 1376538 -116486089 + MLT2D LTR ERVL 480 515 0 710 282 102 50 chr9 1376802 1377320 -116485307 + L2 LINE L2 527 1071 -2243 948 199 22 0 chr9 1377840 1378018 -116484609 - MER3 DNA MER1_type -19 190 9 831 196 136 11 chr9 1378018 1378202 -116484425 + MER58C DNA MER1_type 1 207 -8 206 379 70 9 chr9 1378574 1378788 -116483839 - L2 LINE L2 -234 3038 2812 201 39 0 0 chr9 1380853 1380879 -116481748 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3071 166 35 35 chr9 1380880 1381506 -116481121 - MER73 LTR ERVL -18 626 1 3613 119 11 0 chr9 1381678 1382216 -116480411 - L1PA13 LINE L1 -56 6107 5564 2583 32 0 10 chr9 1382482 1382795 -116479832 + AluY SINE Alu 1 310 -1 303 272 174 0 chr9 1382885 1382977 -116479650 + MIR SINE MIR 126 233 -29 216 261 0 46 chr9 1383186 1383251 -116479376 + MIR SINE MIR 157 218 -44 10298 183 48 18 chr9 1383579 1386164 -116476463 - L1MA4A LINE L1 -5 6161 3654 1083 45 0 0 chr9 1386164 1386296 -116476331 - L1PA3 LINE L1 -3 6152 6021 10298 183 48 18 chr9 1386296 1386504 -116476123 - L1MA4A LINE L1 -2512 3654 3454 2006 118 37 0 chr9 1386504 1386800 -116475827 - AluSx SINE Alu -5 307 1 10298 183 48 18 chr9 1386800 1387211 -116475416 - L1MA4A LINE L1 -2712 3454 2849 2184 238 70 57 chr9 1387238 1388378 -116474249 - L1ME LINE L1 -369 5866 4676 279 100 0 0 chr9 1388378 1388418 -116474209 + U5 snRNA snRNA 3 42 -74 2184 238 70 57 chr9 1388418 1388653 -116473974 - L1ME LINE L1 -1559 4676 4446 4690 220 72 32 chr9 1388666 1390399 -116472228 - L1 LINE L1 -2659 4906 3100 2854 272 42 11 chr9 1390411 1391456 -116471171 - L1ME LINE L1 -1802 4413 3337 460 155 0 21 chr9 1392065 1392162 -116470465 - L1MA10 LINE L1 0 6334 6240 268 185 77 0 chr9 1392170 1392235 -116470392 - L1P LINE L1 -2890 3256 3187 1667 248 83 17 chr9 1392248 1392997 -116469630 - L1ME LINE L1 -3143 3072 2275 665 167 32 24 chr9 1393024 1393150 -116469477 + FLAM_C SINE Alu 10 136 -7 2285 94 0 0 chr9 1393152 1393438 -116469189 + AluSp SINE Alu 1 286 -27 1936 83 0 0 chr9 1393438 1393702 -116468925 - THE1B-int LTR MaLR -1316 264 1 2014 132 79 15 chr9 1393702 1394044 -116468583 - THE1B LTR MaLR 0 364 1 480 272 230 25 chr9 1394142 1394643 -116467984 - L1ME LINE L1 -4925 1471 1074 1912 137 20 3 chr9 1394643 1394935 -116467692 - AluSx SINE Alu -15 297 1 480 272 230 25 chr9 1394935 1395149 -116467478 - L1ME LINE L1 -5322 1074 609 1802 211 87 27 chr9 1395295 1395849 -116466778 + L1MC4 LINE L1 7443 8029 -13 346 299 35 62 chr9 1397303 1397447 -116465180 - MIR SINE MIR -108 154 15 721 330 83 29 chr9 1397518 1398000 -116464627 - L2 LINE L2 -2 3311 2804 239 211 0 19 chr9 1398049 1398101 -116464526 + L2 LINE L2 2715 2765 -549 253 364 76 0 chr9 1398674 1398792 -116463835 + L2 LINE L2 3184 3310 -3 199 234 0 117 chr9 1398801 1398878 -116463749 + MIR SINE MIR 58 125 -83 612 283 31 22 chr9 1398949 1399175 -116463452 - MIR SINE MIR -17 245 18 2226 90 6 40 chr9 1399227 1399589 -116463038 - AluY SINE Alu 0 351 1 4276 178 79 13 chr9 1399687 1400954 -116461673 - L1MA8 LINE L1 -4 6287 4936 2462 136 45 12 chr9 1401952 1402370 -116460257 + MSTB1 LTR MaLR 1 432 0 221 344 0 0 chr9 1402421 1402485 -116460142 - MIR SINE MIR -60 148 85 251 222 19 0 chr9 1402557 1402667 -116459960 + CT-rich Low_complexity Low_complexity 1 112 0 210 147 13 53 chr9 1402700 1402775 -116459852 + CT-rich Low_complexity Low_complexity 2 73 0 27 73 0 0 chr9 1403018 1403073 -116459554 + AT_rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr9 1403121 1403152 -116459475 + AT_rich Low_complexity Low_complexity 1 31 0 1253 124 21 5 chr9 1403355 1403549 -116459078 - L1PA13 LINE L1 -58 6105 5909 1386 247 92 13 chr9 1403593 1404193 -116458434 + MER114 LTR ERV 1 647 -1 598 229 52 60 chr9 1404484 1404733 -116457894 - L1MD2 LINE L1 -17 6342 6096 1196 221 56 21 chr9 1404734 1405065 -116457562 - Tigger7 DNA MER2_type 0 2491 2 1621 246 78 32 chr9 1405066 1405563 -116457064 - L1MD2 LINE L1 -263 6096 5577 1127 233 31 24 chr9 1405766 1406054 -116456573 - L1MD2 LINE L1 -651 5591 5302 2121 50 28 7 chr9 1406056 1406338 -116456289 - L1PA4 LINE L1 0 6155 5868 559 0 15 0 chr9 1406338 1406404 -116456223 + L1PA4 LINE L1 5797 5863 -292 1758 259 56 17 chr9 1406409 1407072 -116455555 - L1MD2 LINE L1 -842 5304 4616 3349 191 59 76 chr9 1407100 1408158 -116454469 - L1MB8 LINE L1 0 6178 5115 183 42 0 0 chr9 1408158 1408182 -116454445 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3349 191 59 76 chr9 1408182 1408237 -116454390 - L1MB8 LINE L1 -1063 5115 5061 * 3382 200 35 15 chr9 1408233 1409422 -116453205 + L1MB5 LINE L1 4699 5953 -225 4357 152 53 13 chr9 1409422 1410216 -116452411 + LTR1B LTR ERV1 1 826 0 3382 200 35 15 chr9 1410216 1410428 -116452199 + L1MB5 LINE L1 5953 6159 -19 855 345 69 35 chr9 1411244 1411792 -116450835 - L3 LINE CR1 -1 1576 1010 386 325 24 16 chr9 1411814 1411937 -116450690 + L2 LINE L2 3141 3264 -8 181 347 0 14 chr9 1412450 1412522 -116450105 - MIR SINE MIR -118 90 20 1929 277 43 5 chr9 1414325 1414910 -116447717 - L1ME3A LINE L1 -23 6147 5541 1932 128 11 3 chr9 1415233 1415515 -116447112 + AluSx SINE Alu 4 287 -25 201 268 0 0 chr9 1415808 1415849 -116446778 - L2 LINE L2 -14 3258 3218 482 239 127 0 chr9 1417156 1417290 -116445337 + MER69 DNA AcHobo 6 156 -1070 1342 99 16 5 chr9 1417312 1417504 -116445123 - AluSc SINE Alu -12 297 104 230 304 64 60 chr9 1417538 1417788 -116444839 - L2 LINE L2 -205 3067 2817 950 88 22 15 chr9 1419389 1419526 -116443101 + MER85 DNA T2_type 1 138 -1 1726 168 42 3 chr9 1419554 1419840 -116442787 - MER50-int LTR ERV1 -6902 303 7 3891 129 32 71 chr9 1419840 1420591 -116442036 - MER50 LTR ERV1 -12 722 1 542 252 60 33 chr9 1420767 1420918 -116441709 + MIR SINE MIR 3 157 -105 21 36 0 0 chr9 1420986 1421014 -116441613 + AT_rich Low_complexity Low_complexity 1 28 0 775 195 15 135 chr9 1421079 1421413 -116441214 - TAR1 Satellite telomeric -1815 296 3 * 1459 186 49 34 chr9 1421208 1421558 -116441069 - LTR60 LTR ERV1 -3 583 229 709 169 83 156 chr9 1421558 1421859 -116440768 - LTR60 LTR ERV1 -307 279 1 792 142 0 8 chr9 1422524 1422644 -116439983 + THE1C LTR MaLR 1 119 -256 * 1049 82 0 0 chr9 1422639 1422773 -116439854 + THE1C LTR MaLR 242 375 0 1731 243 69 40 chr9 1424174 1424882 -116437745 - MER20B DNA MER1_type -5 778 24 1289 252 145 24 chr9 1424882 1425295 -116437332 - LTR16B LTR ERVL 0 464 2 3929 135 64 70 chr9 1426386 1427170 -116435457 + LTR1 LTR ERV1 7 785 0 348 234 58 88 chr9 1428523 1428660 -116433967 + L2 LINE L2 3122 3254 -18 667 329 82 47 chr9 1429089 1429448 -116433179 - MLT1K LTR MaLR -17 571 185 1663 155 59 98 chr9 1429448 1429854 -116432773 + MLT1B LTR MaLR 1 390 0 667 329 82 47 chr9 1429854 1430029 -116432598 - MLT1K LTR MaLR -403 185 18 3011 141 22 59 chr9 1430623 1430854 -116431773 + MER4B LTR ERV1 1 239 -371 1180 122 168 0 chr9 1430854 1431050 -116431577 + MER30 DNA MER1_type 1 229 -1 3011 141 22 59 chr9 1431050 1431414 -116431213 + MER4B LTR ERV1 239 574 -36 227 296 61 10 chr9 1431616 1431714 -116430913 + LTR33 LTR ERVL 112 214 -307 555 266 44 25 chr9 1431768 1431971 -116430656 + LTR33 LTR ERVL 308 514 -7 531 246 10 74 chr9 1432082 1432285 -116430342 + MIR SINE MIR 63 252 -10 930 303 92 10 chr9 1432331 1432731 -116429896 - LTR16A LTR ERVL 0 450 18 1694 310 63 31 chr9 1433050 1434087 -116428540 - HERV16 LTR ERVL -300 5026 4066 512 342 38 14 chr9 1434423 1434804 -116427823 - HERV16 LTR ERVL -2060 3704 3288 815 122 0 0 chr9 1485123 1485246 -116377381 + MLT2A2 LTR ERVL 301 423 -30 237 322 26 0 chr9 1485281 1485396 -116377231 - LTR40c LTR ERVL -177 288 171 6364 168 27 7 chr9 1486062 1488260 -116374367 + L1PB3 LINE L1 3911 6153 -1 288 301 76 51 chr9 1489321 1489504 -116373123 + MIR SINE MIR 37 220 -42 495 245 1 2 chr9 1490463 1490607 -116372020 + L1MA10 LINE L1 6003 6304 -23 809 233 38 38 chr9 1490612 1490904 -116371723 - LTR13 LTR ERVK -715 292 1 620 111 0 0 chr9 1490904 1490993 -116371634 + MER4E LTR ERV1 129 217 -562 788 93 0 0 chr9 1490991 1491098 -116371529 + MER4E LTR ERV1 660 766 0 898 226 19 33 chr9 1491142 1491354 -116371273 - MER63A DNA MER1_type 0 210 2 215 227 0 0 chr9 1491354 1491398 -116371229 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 197 211 18 0 chr9 1491415 1491472 -116371155 + (TG)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr9 1491633 1491656 -116370971 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr9 1491785 1491827 -116370800 + AT_rich Low_complexity Low_complexity 1 42 0 540 273 68 18 chr9 1492276 1492455 -116370172 - MIR SINE MIR -51 211 20 4199 189 40 9 chr9 1494156 1495506 -116367121 + L1MB5 LINE L1 4789 6174 0 244 182 18 36 chr9 1495860 1495915 -116366712 + (TAGG)n Simple_repeat Simple_repeat 4 57 0 2277 198 4 26 chr9 1495915 1496384 -116366243 - MLT2B2 LTR ERVL -48 467 9 308 102 0 17 chr9 1496384 1496443 -116366184 - ERVL-B2 LTR ERVL -8 5756 5699 * 1096 172 5 15 chr9 1496441 1496644 -116365983 - ERVL LTR ERVL -1423 4341 4141 41015 48 4 1 chr9 1497626 1503760 -116358867 + L1PA4 LINE L1 4 6155 0 302 300 100 19 chr9 1503907 1504067 -116358560 + L1ME4a LINE L1 5255 5427 -932 514 302 56 28 chr9 1504143 1504501 -116358126 + L1ME4a LINE L1 5566 5933 -188 759 195 7 7 chr9 1504855 1505004 -116357623 + MER106B DNA MER1_type 7 155 -904 4624 178 30 51 chr9 1505033 1505193 -116357434 - L1MA9 LINE L1 0 6548 6386 1720 99 114 33 chr9 1505193 1505466 -116357161 - AluSg SINE Alu -15 295 1 4624 178 30 51 chr9 1505466 1507478 -116355149 - L1MA9 LINE L1 -162 6386 4425 905 217 54 27 chr9 1507659 1508192 -116354435 - L1MA9 LINE L1 -4177 2206 1146 40511 38 21 1 chr9 1508210 1514239 -116348388 - L1PA3 LINE L1 -1 6154 3 2335 257 46 33 chr9 1514239 1515555 -116347072 - L1M3c LINE L1 -4739 2298 958 1359 193 0 7 chr9 1515555 1515829 -116346798 - L1M3c LINE L1 -6758 272 1 24 77 0 0 chr9 1515841 1515893 -116346734 + AT_rich Low_complexity Low_complexity 1 52 0 240 100 0 0 chr9 1516310 1516350 -116346277 + (CA)n Simple_repeat Simple_repeat 2 41 0 739 223 81 12 chr9 1517515 1517642 -116344985 - L1MD3 LINE L1 -2 7993 7876 2090 141 0 0 chr9 1517642 1517946 -116344681 + AluSx SINE Alu 1 304 -8 739 223 81 12 chr9 1517946 1518065 -116344562 - L1MD3 LINE L1 -119 7876 7730 462 303 8 8 chr9 1518364 1518486 -116344141 - MIR3 SINE MIR -29 179 58 236 170 19 0 chr9 1518549 1518602 -116344025 + (TA)n Simple_repeat Simple_repeat 2 55 0 314 341 8 38 chr9 1519490 1519622 -116343005 + MIR SINE MIR 8 135 -73 498 228 128 13 chr9 1520048 1520197 -116342430 + MLT1D LTR MaLR 1 166 -339 372 174 76 0 chr9 1520210 1520302 -116342325 + MLT1D LTR MaLR 407 505 0 325 325 118 14 chr9 1520607 1520819 -116341808 + MIR SINE MIR 14 247 -15 262 316 53 0 chr9 1520933 1521009 -116341618 - L2 LINE L2 -35 3278 3199 2276 101 29 9 chr9 1521739 1522087 -116340540 - L1PA7 LINE L1 -1 6153 5799 1157 266 91 54 chr9 1522130 1522645 -116339982 - L1M4 LINE L1 -5856 686 153 * 22100 50 19 1 chr9 1522643 1526901 -116335726 - L1PA5 LINE L1 0 6154 1834 373 205 13 0 chr9 1527001 1527079 -116335548 + L1 LINE L1 4138 4216 -1930 1426 183 9 68 chr9 1527102 1527425 -116335202 - MLT2A2 LTR ERVL -149 304 1 264 277 42 42 chr9 1527442 1527561 -116335066 + LTR40b LTR ERVL 305 423 -39 238 154 77 43 chr9 1528409 1528526 -116334101 + (TTAA)n Simple_repeat Simple_repeat 4 124 0 182 330 75 32 chr9 1528539 1528633 -116333994 - L2 LINE L2 -17 3255 3158 398 332 108 56 chr9 1528796 1529064 -116333563 + L2 LINE L2 2987 3268 -4 2711 210 46 48 chr9 1529162 1529996 -116332631 + L1ME1 LINE L1 5254 6243 -91 201 154 0 0 chr9 1530007 1530046 -116332581 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 86 0 0 chr9 1530804 1530874 -116331753 + AT_rich Low_complexity Low_complexity 1 70 0 207 100 0 0 chr9 1531088 1531118 -116331509 + (TG)n Simple_repeat Simple_repeat 1 30 0 266 296 0 0 chr9 1531118 1531216 -116331411 + GA-rich Low_complexity Low_complexity 2 99 0 467 360 7 7 chr9 1532047 1532200 -116330427 + MIR SINE MIR 33 185 -77 1194 131 23 0 chr9 1532844 1533106 -116329521 - L1MA10 LINE L1 -568 5766 5420 2527 184 19 25 chr9 1533106 1533672 -116328955 + L1MA10 LINE L1 5762 6324 -10 224 240 53 27 chr9 1533872 1533947 -116328680 - MIR SINE MIR -30 232 156 433 336 159 17 chr9 1534008 1534424 -116328203 - L2 LINE L2 0 3313 2839 758 263 56 117 chr9 1535059 1535596 -116327031 + LTR33 LTR ERVL 3 506 -15 398 236 154 0 chr9 1535678 1535788 -116326839 - MIR SINE MIR -99 163 37 1917 275 91 15 chr9 1536573 1537491 -116325136 - L1ME3A LINE L1 -5 6165 5175 376 183 238 16 chr9 1537636 1537762 -116324865 + MER21B LTR ERV1 662 815 -48 560 186 180 0 chr9 1537824 1537985 -116324642 + L1MC5 LINE L1 7712 7901 -60 481 335 17 30 chr9 1538003 1538239 -116324388 - L2 LINE L2 -1480 1834 1602 732 292 83 74 chr9 1538265 1538548 -116324079 - L2 LINE L2 -340 2974 2695 417 20 0 0 chr9 1538548 1538598 -116324029 + (TG)n Simple_repeat Simple_repeat 2 51 0 732 292 83 74 chr9 1538598 1538724 -116323903 - L2 LINE L2 -619 2695 2558 1583 249 46 20 chr9 1538724 1539177 -116323450 + MLT1C LTR MaLR 1 465 -2 732 292 83 74 chr9 1539177 1539211 -116323416 - L2 LINE L2 -756 2558 2526 58 102 0 0 chr9 1539211 1539416 -116323211 + AT_rich Low_complexity Low_complexity 1 205 0 403 267 91 91 chr9 1539546 1539864 -116322763 + L1ME4a LINE L1 4669 4986 -1160 42951 48 4 1 chr9 1539970 1546104 -116316523 + L1PA4 LINE L1 4 6155 0 228 300 9 9 chr9 1546301 1546411 -116316216 + L1P LINE L1 5318 5427 -724 597 304 50 22 chr9 1546487 1546845 -116315782 + L1ME4a LINE L1 5566 5933 -188 810 195 7 7 chr9 1547199 1547348 -116315279 + MER106B DNA MER1_type 7 155 -904 4951 178 30 51 chr9 1547377 1547537 -116315090 - L1MA9 LINE L1 0 6548 6386 1704 99 114 33 chr9 1547537 1547810 -116314817 - AluSg SINE Alu -15 295 1 4951 178 30 51 chr9 1547810 1549822 -116312805 - L1MA9 LINE L1 -162 6386 4425 972 227 66 32 chr9 1549810 1550536 -116312091 - L1MA9 LINE L1 -4177 2206 1146 * 40220 63 12 5 chr9 1550554 1556653 -116305974 - L1PA2 LINE L1 -1 6154 11 490 256 17 59 chr9 1556673 1556906 -116305721 - L1ME LINE L1 -690 5480 5256 314 304 81 40 chr9 1556915 1557063 -116305564 + MLT1D LTR MaLR 3 156 -349 1441 240 58 0 chr9 1557091 1557525 -116305102 + L1MB5 LINE L1 4114 4572 -1574 4433 179 21 26 chr9 1557535 1558441 -116304186 + L1MB5 LINE L1 5254 6154 -20 478 285 60 35 chr9 1558504 1558704 -116303923 - MLT1J2 LTR MaLR -241 209 5 242 297 66 22 chr9 1558707 1558798 -116303829 + MER5A DNA MER1_type 93 187 -2 359 21 21 0 chr9 1559767 1559815 -116302812 + (CA)n Simple_repeat Simple_repeat 2 50 0 3611 208 49 76 chr9 1559862 1559954 -116302673 + L1MB8 LINE L1 4021 4114 -2032 3625 72 4 6 chr9 1559954 1560441 -116302186 - L1PA8 LINE L1 -3 6169 5684 3611 208 49 76 chr9 1560441 1561645 -116300982 + L1MB8 LINE L1 4114 5282 -864 23 78 0 0 chr9 1561646 1561697 -116300930 + AT_rich Low_complexity Low_complexity 1 51 0 3187 192 74 44 chr9 1561752 1562618 -116300009 + L1MB8 LINE L1 5285 6176 -2 243 0 0 0 chr9 1562741 1562768 -116299859 + (TG)n Simple_repeat Simple_repeat 2 28 0 1496 208 38 38 chr9 1563372 1563719 -116298908 - MLT1A1 LTR MaLR 0 365 19 418 296 13 72 chr9 1563784 1563936 -116298691 + MIR SINE MIR 76 218 -44 5417 128 20 9 chr9 1564105 1564996 -116297631 - L1PB3 LINE L1 0 6154 5254 338 336 41 0 chr9 1565068 1565190 -116297437 - MIR3 SINE MIR -21 187 61 184 156 47 94 chr9 1565844 1565908 -116296719 + MIR SINE MIR 70 130 -132 193 311 0 0 chr9 1566268 1566313 -116296314 + MIR SINE MIR 196 240 -22 * 209 308 0 0 chr9 1566279 1566331 -116296296 + L2 LINE L2 3252 3303 -10 1958 145 7 0 chr9 1568059 1568355 -116294272 + AluSx SINE Alu 1 298 -14 411 196 38 0 chr9 1568359 1568517 -116294110 + (TA)n Simple_repeat Simple_repeat 2 165 0 469 211 11 0 chr9 1568532 1568622 -116294005 - LTR16C LTR ERVL -2 489 399 495 235 38 0 chr9 1571250 1571382 -116291245 - Charlie4 DNA MER1_type -1 1960 1824 911 182 21 42 chr9 1572344 1572536 -116290091 - MER5A DNA MER1_type -1 188 1 192 200 0 0 chr9 1572733 1572778 -116289849 + T-rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr9 1575160 1575185 -116287442 + AT_rich Low_complexity Low_complexity 1 25 0 595 242 149 6 chr9 1576085 1576246 -116286381 - MER5A DNA MER1_type 0 189 6 26 0 0 0 chr9 1576842 1576868 -116285759 + AT_rich Low_complexity Low_complexity 1 26 0 640 87 39 0 chr9 1577171 1577275 -116285352 + L1MA3 LINE L1 6198 6305 0 593 235 15 0 chr9 1577395 1577527 -116285100 + MER94 DNA DNA 1 134 0 2160 101 0 10 chr9 1577572 1577870 -116284757 + AluSg SINE Alu 6 300 -10 215 268 106 101 chr9 1577891 1578089 -116284538 - L3 LINE CR1 -100 1477 1279 434 292 5 103 chr9 1578259 1578454 -116284173 - L3 LINE CR1 -30 1547 1372 292 340 64 32 chr9 1579169 1579357 -116283270 + MIR3 SINE MIR 10 203 -5 1818 166 7 3 chr9 1580081 1580377 -116282250 - AluJb SINE Alu -15 297 1 339 308 89 0 chr9 1580881 1581027 -116281600 + Charlie8 DNA MER1_type 85 243 -2174 315 295 150 52 chr9 1582545 1582738 -116279889 + MIR SINE MIR 46 257 -5 205 325 163 12 chr9 1583200 1583360 -116279267 + L2 LINE L2 2157 2340 -974 2478 174 8 32 chr9 1583414 1583886 -116278741 - MER70B LTR ERVL -117 461 1 395 366 31 26 chr9 1584232 1584599 -116278028 + L2 LINE L2 2693 3053 -219 228 241 48 24 chr9 1584643 1584726 -116277901 + MLT1I LTR MaLR 130 214 -195 268 385 117 6 chr9 1584903 1585082 -116277545 + L2 LINE L2 3070 3268 -4 629 302 155 22 chr9 1585289 1585690 -116276937 - LTR33 LTR ERVL -2 519 66 408 261 137 70 chr9 1585832 1586073 -116276554 + L2 LINE L2 2980 3236 -36 199 283 0 0 chr9 1586561 1586614 -116276013 + MIR SINE MIR 76 128 -80 198 0 0 0 chr9 1587691 1587713 -116274914 + (CAG)n Simple_repeat Simple_repeat 1 22 0 420 284 43 7 chr9 1588229 1588370 -116274257 - L2 LINE L2 0 3313 3168 434 345 40 22 chr9 1588700 1588743 -116273884 - L2 LINE L2 -543 2771 2730 477 277 9 0 chr9 1588743 1588855 -116273772 - MER81 DNA DNA -1 113 1 434 345 40 22 chr9 1588855 1589037 -116273590 - L2 LINE L2 -584 2730 2542 1743 168 58 28 chr9 1589090 1589454 -116273173 - THE1C LTR MaLR 0 375 1 5122 132 11 19 chr9 1589454 1590302 -116272325 - THE1C-int LTR MaLR 0 1580 740 1817 116 21 0 chr9 1590306 1590591 -116272036 - THE1C-int LTR MaLR -1184 396 106 5342 108 13 12 chr9 1590591 1591411 -116271216 + HERVL-B3 LTR ERVL 4834 5654 0 1931 215 50 59 chr9 1591411 1591970 -116270657 + MLT2B3 LTR ERVL 1 554 0 807 309 139 14 chr9 1591993 1592498 -116270129 - L2 LINE L2 -826 2488 1921 452 111 0 0 chr9 1592499 1592562 -116270065 + AluJ/FRAM SINE Alu 233 295 -17 201 375 60 39 chr9 1592570 1592802 -116269825 - L2 LINE L2 -1391 1923 1687 250 276 43 43 chr9 1592978 1593094 -116269533 + L2 LINE L2 2595 2710 -604 735 224 37 8 chr9 1593100 1593345 -116269282 + L1MD2 LINE L1 2346 2597 -3943 3408 213 42 21 chr9 1593350 1593550 -116269077 + L1MD2 LINE L1 5482 5676 -1077 2068 84 7 15 chr9 1593550 1593824 -116268803 + AluY SINE Alu 22 293 -18 3408 213 42 21 chr9 1593824 1594642 -116267985 + L1MD2 LINE L1 5676 6538 -215 346 224 10 0 chr9 1594631 1594729 -116267898 + L1MC1 LINE L1 5204 5302 -844 * 271 203 0 0 chr9 1594770 1594829 -116267798 + L1MC1 LINE L1 5292 5350 -983 1019 153 20 10 chr9 1594839 1595035 -116267592 + L1MC1 LINE L1 5571 5768 -565 3065 180 38 19 chr9 1595039 1595637 -116266990 + L1MC1 LINE L1 5356 5941 -301 6220 57 1 1 chr9 1595637 1596412 -116266215 + L1PA6 LINE L1 5367 6141 -13 3065 180 38 19 chr9 1596412 1596437 -116266190 + L1MC1 LINE L1 5941 5964 -278 1671 205 19 3 chr9 1596437 1596803 -116265824 + L1MC1 LINE L1 5962 6333 0 3065 180 38 19 chr9 1596803 1597053 -116265574 + L1MC1 LINE L1 5964 6242 0 654 329 111 23 chr9 1597055 1597169 -116265458 + L2 LINE L2 2708 2811 -502 186 43 0 0 chr9 1597169 1597192 -116265435 + (TC)n Simple_repeat Simple_repeat 2 24 0 654 329 111 23 chr9 1597192 1597630 -116264997 + L2 LINE L2 2811 3312 -1 1075 149 97 154 chr9 1598339 1598722 -116263905 - MLT1A2 LTR MaLR -12 362 2 2897 6 0 0 chr9 1598967 1599281 -116263346 - AluYb8 SINE Alu -4 314 1 1635 264 128 38 chr9 1599380 1600331 -116262296 + L2 LINE L2 2032 3120 -193 2245 162 26 33 chr9 1600331 1600751 -116261876 + MER47B DNA MER2_type 1 417 -1 1635 264 128 38 chr9 1600751 1600960 -116261667 + L2 LINE L2 3120 3309 -4 197 200 25 0 chr9 1600963 1601003 -116261624 - MIR SINE MIR -63 145 105 2016 107 13 3 chr9 1601055 1601372 -116261255 - L1PA15 LINE L1 -582 5583 5264 3417 130 23 5 chr9 1601372 1601933 -116260694 + L1PA15 LINE L1 5595 6165 0 394 325 12 35 chr9 1603430 1603599 -116259028 - MER5B DNA MER1_type 0 178 14 302 274 51 45 chr9 1603766 1603923 -116258704 + MIR SINE MIR 80 237 -25 502 289 151 0 chr9 1604314 1604466 -116258161 + MER5A DNA MER1_type 9 183 -6 407 267 223 5 chr9 1606148 1606350 -116256277 - MER112 DNA MER1_type -7 253 8 1123 127 16 37 chr9 1606542 1606731 -116255896 + MER5A DNA MER1_type 5 189 0 237 248 23 39 chr9 1607591 1607720 -116254907 + (CA)n Simple_repeat Simple_repeat 1 127 0 304 118 29 0 chr9 1607753 1607821 -116254806 + (CA)n Simple_repeat Simple_repeat 1 70 0 2417 69 0 3 chr9 1607981 1608285 -116254342 + AluY SINE Alu 1 303 -8 1924 169 0 3 chr9 1608409 1608705 -116253922 + AluJb SINE Alu 3 297 -15 260 280 107 39 chr9 1608723 1609059 -116253568 + L1M4 LINE L1 3587 3945 -2201 4021 211 34 36 chr9 1609070 1610195 -116252432 - L1MB3 LINE L1 -3 6163 5036 1780 188 26 0 chr9 1610195 1610499 -116252128 - AluJb SINE Alu 0 312 1 4021 211 34 36 chr9 1610499 1611473 -116251154 - L1MB3 LINE L1 -1130 5036 4062 2795 239 71 2 chr9 1611460 1612332 -116250295 - L1MB3 LINE L1 -2319 3810 2879 * 2414 62 0 28 chr9 1612549 1612869 -116249758 - AluY SINE Alu 0 311 1 396 73 0 0 chr9 1612874 1612929 -116249698 + L1PA6 LINE L1 6094 6148 -6 1899 222 103 2 chr9 1613038 1613493 -116249134 + MLT1D LTR MaLR 1 501 -4 898 274 114 76 chr9 1613562 1614511 -116248116 - L1MB3 LINE L1 -4862 1257 335 2566 114 5 11 chr9 1614511 1614888 -116247739 - THE1C LTR MaLR 0 375 1 898 274 114 76 chr9 1614888 1615226 -116247401 - L1MB3 LINE L1 -5784 335 11 991 208 97 143 chr9 1615232 1615818 -116246809 - MLT1F1 LTR MaLR 0 567 17 1999 191 12 10 chr9 1615842 1616251 -116246376 - L1PA16 LINE L1 0 6166 5757 894 245 100 121 chr9 1616301 1617134 -116245493 + L1ME4a LINE L1 5307 6121 0 413 331 22 43 chr9 1617436 1617620 -116245007 - MIR SINE MIR -50 212 33 184 395 47 12 chr9 1617654 1617740 -116244887 - L2 LINE L2 -28 3244 3156 417 86 0 0 chr9 1618524 1618582 -116244045 + (TAA)n Simple_repeat Simple_repeat 3 60 0 200 257 57 14 chr9 1618698 1618768 -116243859 + MIR SINE MIR 58 130 -78 567 228 78 71 chr9 1618837 1619092 -116243535 - MIR SINE MIR -1 261 5 485 361 50 4 chr9 1619666 1619904 -116242723 + MIR SINE MIR 8 256 -6 239 279 15 0 chr9 1622014 1622082 -116240545 + MIR SINE MIR 178 246 -16 8312 198 31 17 chr9 1622451 1625322 -116237305 - L1PA16 LINE L1 -9 6157 3311 671 245 14 0 chr9 1626201 1626348 -116236279 - MIR SINE MIR -111 151 3 24 0 0 0 chr9 1626878 1626902 -116235725 + AT_rich Low_complexity Low_complexity 1 24 0 266 260 0 26 chr9 1627053 1627130 -116235497 + CT-rich Low_complexity Low_complexity 2 76 0 516 222 71 142 chr9 1629071 1629395 -116233232 + MLT1J2 LTR MaLR 150 450 0 27 0 0 0 chr9 1629526 1629553 -116233074 + AT_rich Low_complexity Low_complexity 1 27 0 255 300 0 0 chr9 1629624 1629694 -116232933 - L2 LINE L2 0 3313 3244 240 345 36 9 chr9 1629807 1629917 -116232710 - L2 LINE L2 -91 3222 3110 34 24 0 0 chr9 1630636 1630677 -116231950 + AT_rich Low_complexity Low_complexity 1 41 0 625 245 19 26 chr9 1631069 1631278 -116231349 - MIR SINE MIR 0 262 8 181 303 110 58 chr9 1632081 1632236 -116230391 + L3b LINE CR1 1225 1387 -196 321 260 20 82 chr9 1632329 1632475 -116230152 - MIR SINE MIR -56 206 70 279 0 0 0 chr9 1632786 1632817 -116229810 + (A)n Simple_repeat Simple_repeat 1 31 0 630 175 0 0 chr9 1632892 1633006 -116229621 - L1MB8 LINE L1 -2 6176 6063 307 331 97 36 chr9 1633381 1633795 -116228832 + L2 LINE L2 2267 2705 -609 3377 111 4 14 chr9 1633795 1634300 -116228327 + Charlie3 DNA MER1_type 1 500 -2210 404 119 0 0 chr9 1634294 1634353 -116228274 + Charlie3 DNA MER1_type 2242 2300 -410 * 3024 97 2 50 chr9 1634356 1634840 -116227787 + Charlie3 DNA MER1_type 2245 2705 -5 180 356 20 89 chr9 1634842 1635044 -116227583 + L2 LINE L2 2699 2886 -428 2505 61 0 0 chr9 1635119 1635430 -116227197 - AluY SINE Alu 0 311 1 261 290 0 0 chr9 1635658 1635727 -116226900 + L2 LINE L2 3196 3264 -8 1993 196 70 32 chr9 1635813 1636344 -116226283 + L1MB3 LINE L1 5625 6175 -8 2351 148 0 3 chr9 1636344 1636710 -116225917 + MLT1A1 LTR MaLR 1 365 0 348 359 27 29 chr9 1636720 1636889 -116225738 + MIR3 SINE MIR 20 191 -17 328 296 49 0 chr9 1637130 1637211 -116225416 - L2 LINE L2 -2 3270 3186 231 200 0 0 chr9 1638240 1638280 -116224347 - L2 LINE L2 -12 3301 3262 200 313 138 12 chr9 1638373 1638453 -116224174 - MIR SINE MIR -53 209 120 * 231 344 56 11 chr9 1638436 1638526 -116224101 + MIR SINE MIR 28 121 -87 1353 190 26 95 chr9 1638619 1639041 -116223586 - MSTD LTR MaLR 0 396 4 5602 237 84 27 chr9 1639058 1640684 -116221943 - MSTD-int LTR MaLR -15 1720 2 979 172 59 25 chr9 1640686 1640890 -116221737 - MSTD LTR MaLR 0 396 186 2298 125 0 0 chr9 1641243 1641555 -116221072 - AluSx SINE Alu 0 312 1 349 293 96 19 chr9 1642821 1642978 -116219649 - MIR3 SINE MIR 0 208 40 367 277 85 57 chr9 1643602 1643779 -116218848 + MIR SINE MIR 35 216 -46 932 303 92 10 chr9 1643781 1644193 -116218434 - LTR16A LTR ERVL -4 446 1 358 350 12 8 chr9 1644334 1644616 -116218011 - ERVL LTR ERVL -327 5327 5046 563 356 35 23 chr9 1644650 1645164 -116217463 - ERVL LTR ERVL -754 4900 4436 633 315 36 47 chr9 1645286 1645788 -116216839 - ERVL LTR ERVL -2020 3634 3137 738 317 75 13 chr9 1645824 1646130 -116216497 - ERVL LTR ERVL -1912 3084 2760 3779 290 51 11 chr9 1646131 1647437 -116215190 - HERV16 LTR ERVL -3480 1516 158 420 364 65 16 chr9 1648691 1648875 -116213752 + MIR3 SINE MIR 1 193 -15 345 345 39 97 chr9 1648895 1649309 -116213318 - L2 LINE L2 0 3272 2883 540 286 120 36 chr9 1649762 1650855 -116211772 - L1MDb LINE L1 -3660 2555 1398 315 278 7 48 chr9 1650867 1651127 -116211500 - L1MDb LINE L1 -5097 1108 857 305 339 36 9 chr9 1651785 1651897 -116210730 - L1MDb LINE L1 -5953 252 138 253 254 0 0 chr9 1653922 1653985 -116208642 + GA-rich Low_complexity Low_complexity 2 64 0 954 188 18 61 chr9 1654294 1654486 -116208141 + MER20 DNA MER1_type 1 183 -36 2067 212 125 64 chr9 1654486 1655263 -116207364 - LTR1B LTR ERV1 0 826 3 954 188 18 61 chr9 1655263 1655299 -116207328 + MER20 DNA MER1_type 183 219 0 2015 137 3 3 chr9 1655439 1655738 -116206889 - AluSx SINE Alu -11 301 3 21 36 0 0 chr9 1655870 1655898 -116206729 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 1655991 1656026 -116206601 + AT_rich Low_complexity Low_complexity 1 35 0 311 269 50 55 chr9 1656263 1656464 -116206163 - HAL1 LINE L1 -10 2497 2298 1266 298 109 10 chr9 1656476 1656989 -116205638 + Zaphod DNA AcHobo 44 607 -3424 2668 177 23 86 chr9 1656995 1657725 -116204902 - L1MC2 LINE L1 -2 6342 5659 642 254 83 99 chr9 1657723 1658583 -116204044 - L1ME LINE L1 -4968 1088 272 * 438 320 59 51 chr9 1658714 1659123 -116203504 - L1ME LINE L1 -5610 460 49 9598 224 46 29 chr9 1659175 1659687 -116202940 + L1MB2 LINE L1 1964 2466 -3941 12873 30 5 0 chr9 1659687 1662001 -116200626 + L1PA3 LINE L1 3833 6152 -3 9598 224 46 29 chr9 1662001 1665840 -116196787 + L1MB2 LINE L1 2466 6400 -7 1851 276 105 63 chr9 1665852 1666003 -116196624 - HAL1 LINE L1 -542 1965 1822 2512 74 3 0 chr9 1666003 1666312 -116196315 - AluSp SINE Alu -3 310 1 1851 276 105 63 chr9 1666312 1667942 -116194685 - HAL1 LINE L1 -685 1822 110 1034 184 23 122 chr9 1668551 1668894 -116193733 + MLT1A1 LTR MaLR 1 309 -56 196 29 0 57 chr9 1669851 1669886 -116192741 + (TTG)n Simple_repeat Simple_repeat 3 35 0 267 114 0 0 chr9 1670759 1670803 -116191824 + (CA)n Simple_repeat Simple_repeat 2 45 0 194 315 0 0 chr9 1671395 1671449 -116191178 - L2 LINE L2 -5 3308 3255 22 35 0 0 chr9 1671887 1671916 -116190711 + AT_rich Low_complexity Low_complexity 1 29 0 198 100 50 25 chr9 1672256 1672296 -116190331 + MIR SINE MIR 101 141 -67 2402 44 14 14 chr9 1672335 1672631 -116189996 + AluY SINE Alu 1 296 -15 777 193 0 40 chr9 1672709 1672885 -116189742 + MER3 DNA MER1_type 4 125 -84 248 148 19 56 chr9 1673590 1673644 -116188983 - MIR SINE MIR -79 183 132 242 253 53 13 chr9 1673871 1673946 -116188681 + L2 LINE L2 3194 3271 -1 5291 94 8 7 chr9 1673966 1674731 -116187896 + MER4E LTR ERV1 1 766 0 637 224 109 0 chr9 1675259 1675433 -116187194 + L1MC1 LINE L1 6141 6333 0 223 312 56 56 chr9 1675658 1675783 -116186844 + L2 LINE L2 3134 3258 -14 1240 180 25 109 chr9 1675885 1676279 -116186348 + MLT1A1 LTR MaLR 1 361 -4 669 269 55 43 chr9 1679969 1680225 -116182402 + MIR SINE MIR 4 262 0 23 54 0 0 chr9 1680574 1680611 -116182016 + AT_rich Low_complexity Low_complexity 1 37 0 243 220 0 34 chr9 1681440 1681499 -116181128 + (CATA)n Simple_repeat Simple_repeat 3 59 0 284 183 21 0 chr9 1681629 1681697 -116180930 - MER5A DNA MER1_type -116 73 4 640 196 0 0 chr9 1681721 1681828 -116180799 - AluSx SINE Alu -20 292 186 851 86 0 0 chr9 1681828 1681933 -116180694 - AluSx SINE Alu -207 105 1 657 350 60 53 chr9 1681988 1682761 -116179866 + L2 LINE L2 2481 3271 -1 1799 111 4 8 chr9 1682820 1683072 -116179555 + AluSq SINE Alu 12 262 -51 806 108 8 0 chr9 1683072 1683192 -116179435 + AluSp/q SINE Alu 190 310 -3 355 314 20 10 chr9 1683657 1683759 -116178868 + LTR67 LTR ERVL 115 217 -340 1238 251 5 64 chr9 1683790 1684180 -116178447 - L2 LINE L2 0 3313 2947 436 210 87 118 chr9 1684305 1684500 -116178127 + LTR67 LTR ERVL 361 549 -8 230 267 68 93 chr9 1684912 1684940 -116177687 + MER104 DNA Tc2 2 29 -1869 1853 145 0 30 chr9 1684940 1685260 -116177367 - AluSx SINE Alu 0 312 2 230 267 68 93 chr9 1685260 1685392 -116177235 + MER104 DNA Tc2 29 158 -22 3276 169 58 2 chr9 1685936 1686520 -116176107 - MER73 LTR ERVL 0 644 28 385 291 78 47 chr9 1687047 1687305 -116175322 - MLT1H LTR MaLR -204 345 80 207 321 43 62 chr9 1687473 1687635 -116174992 - MIR SINE MIR -6 256 98 216 0 0 0 chr9 1688467 1688491 -116174136 + (TA)n Simple_repeat Simple_repeat 2 25 0 241 224 20 0 chr9 1689157 1689206 -116173421 + GA-rich Low_complexity Low_complexity 4 53 0 838 246 212 15 chr9 1689811 1690136 -116172491 - MLT1J2 LTR MaLR -18 432 44 331 273 91 10 chr9 1690163 1690262 -116172365 - MIR SINE MIR -65 143 37 308 314 86 14 chr9 1691613 1691753 -116170874 + L2 LINE L2 3121 3270 -2 1745 226 12 0 chr9 1691846 1692183 -116170444 - MER58B DNA MER1_type 0 341 1 27 29 0 0 chr9 1692687 1692721 -116169906 + AT_rich Low_complexity Low_complexity 1 34 0 2075 113 44 10 chr9 1692812 1693105 -116169522 + AluSx SINE Alu 1 303 -9 614 328 70 29 chr9 1693291 1693532 -116169095 + MIR SINE MIR 12 262 0 259 357 134 0 chr9 1694443 1694555 -116168072 + MIR3 SINE MIR 55 181 -27 326 320 107 46 chr9 1694937 1695330 -116167297 + L2 LINE L2 2620 3034 -238 417 349 178 25 chr9 1695702 1696017 -116166610 - L2 LINE L2 -371 2943 2581 * 857 111 16 148 chr9 1696007 1696196 -116166431 - MER5A DNA MER1_type -25 164 1 238 370 0 0 chr9 1696196 1696286 -116166341 - L2 LINE L2 -724 2590 2501 2208 176 57 20 chr9 1696941 1697379 -116165248 + MLT1C LTR MaLR 11 464 -3 204 295 143 27 chr9 1697583 1697695 -116164932 + L2 LINE L2 3146 3270 -2 1573 202 76 9 chr9 1698386 1698728 -116163899 - MLT1A1 LTR MaLR 0 365 1 278 282 68 10 chr9 1698728 1698831 -116163796 + MER94 DNA DNA 26 134 0 2376 65 0 10 chr9 1699046 1699340 -116163287 - AluY SINE Alu -20 291 1 491 318 77 14 chr9 1699562 1699782 -116162845 + MIR SINE MIR 29 262 0 2169 106 0 0 chr9 1700901 1701184 -116161443 + AluSg SINE Alu 6 288 -22 595 281 54 0 chr9 1702204 1702389 -116160238 - LTR16A LTR ERVL -235 215 21 397 257 67 0 chr9 1702388 1702493 -116160134 + MER94 DNA DNA 22 133 -1 * 232 312 52 0 chr9 1703228 1703305 -116159322 + L2 LINE L2 3231 3311 -2 1600 328 17 17 chr9 1704466 1705048 -116157579 - HERV16 LTR ERVL -2764 2232 1651 1051 235 101 35 chr9 1705083 1705449 -116157178 - LTR16A LTR ERVL -1 449 60 388 257 67 0 chr9 1705480 1705585 -116157042 + MER94 DNA DNA 22 133 -1 2001 139 3 19 chr9 1706379 1706695 -116155932 + AluJb SINE Alu 1 311 -1 281 191 96 53 chr9 1707265 1707359 -116155268 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1707865 1708000 -116154627 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1708247 1708281 -116154346 + AT_rich Low_complexity Low_complexity 1 34 0 315 277 62 45 chr9 1708473 1708569 -116154058 + L1ME3 LINE L1 5747 5849 -313 2274 119 0 0 chr9 1708569 1708881 -116153746 - AluSx SINE Alu 0 312 1 315 277 62 45 chr9 1708881 1708961 -116153666 + L1ME3 LINE L1 5849 5926 -236 646 247 88 36 chr9 1709156 1709350 -116153277 - MLT1H LTR MaLR 0 549 364 646 233 124 71 chr9 1709371 1709637 -116152990 - MLT1H LTR MaLR -258 291 12 25 51 0 0 chr9 1709756 1709795 -116152832 + AT_rich Low_complexity Low_complexity 1 39 0 393 346 92 19 chr9 1713299 1713362 -116149265 - L3 LINE CR1 -31 1546 1489 2192 138 39 30 chr9 1713362 1713723 -116148904 + THE1B LTR MaLR 1 364 0 393 346 92 19 chr9 1713723 1713919 -116148708 - L3 LINE CR1 -88 1489 1268 354 228 184 56 chr9 1713946 1714266 -116148361 - L1ME4a LINE L1 -31 6090 5730 219 306 40 65 chr9 1714287 1714411 -116148216 - L2 LINE L2 0 3313 3193 279 278 38 45 chr9 1714569 1714702 -116147925 - L1ME4a LINE L1 -590 5531 5400 811 241 82 5 chr9 1715660 1715880 -116146747 - MIR SINE MIR 0 262 26 325 300 100 9 chr9 1715948 1716058 -116146569 - MIR3 SINE MIR -54 154 35 29 28 0 0 chr9 1716210 1716246 -116146381 + AT_rich Low_complexity Low_complexity 1 36 0 44120 44 6 3 chr9 1716983 1723112 -116139515 + L1PA3 LINE L1 8 6153 -2 222 118 0 0 chr9 1723205 1723239 -116139388 + (TC)n Simple_repeat Simple_repeat 2 35 0 902 358 47 12 chr9 1723580 1724152 -116138475 - L2 LINE L2 -1102 2212 1621 684 24 0 0 chr9 1724191 1724273 -116138354 + (TC)n Simple_repeat Simple_repeat 1 82 0 7738 52 9 6 chr9 1724739 1730250 -116132377 + L1PA4 LINE L1 628 6155 0 2786 16 0 0 chr9 1730253 1730558 -116132069 + AluYa5 SINE Alu 1 305 -6 29 0 0 0 chr9 1730728 1730757 -116131870 + AT_rich Low_complexity Low_complexity 1 29 0 3105 303 66 47 chr9 1731221 1732873 -116129754 + ERVL LTR ERVL 1012 2695 -3069 453 258 0 0 chr9 1732897 1732990 -116129637 + MER5A DNA MER1_type 9 101 -88 892 290 128 28 chr9 1733021 1733423 -116129204 + ERVL LTR ERVL 2675 3104 -2381 1253 127 0 0 chr9 1733540 1733713 -116128914 + AluJb SINE Alu 140 312 0 281 191 96 53 chr9 1734283 1734377 -116128250 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1734883 1735018 -116127609 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1735265 1735299 -116127328 + AT_rich Low_complexity Low_complexity 1 34 0 294 212 63 0 chr9 1735491 1735562 -116127065 + L1ME LINE L1 5747 5813 -349 2818 19 0 0 chr9 1735587 1735898 -116126729 - AluYa5 SINE Alu 0 311 1 35584 41 3 2 chr9 1735901 1740971 -116121656 - L1PA4 LINE L1 0 6155 1081 622 178 0 0 chr9 1740939 1741040 -116121587 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1741186 1741272 -116121355 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1742022 1742043 -116120584 + AT_rich Low_complexity Low_complexity 1 21 0 2642 287 119 14 chr9 1742298 1743543 -116119084 + L2 LINE L2 1378 2752 -562 232 273 130 63 chr9 1743543 1743781 -116118846 - LTR16A1 LTR ERVL -12 445 192 701 261 187 28 chr9 1743806 1744170 -116118457 + L2 LINE L2 2892 3313 0 1510 184 46 158 chr9 1745407 1745933 -116116694 - MLT1C LTR MaLR 0 467 1 512 321 29 24 chr9 1746650 1746896 -116115731 + MIR SINE MIR 2 248 -14 261 216 0 0 chr9 1747955 1748006 -116114621 - MADE1 DNA Mariner 0 80 30 2575 146 56 15 chr9 1748087 1748498 -116114129 + MSTA LTR MaLR 1 428 0 300 241 128 73 chr9 1748945 1749218 -116113409 + LTR16C LTR ERVL 163 483 -8 223 283 64 121 chr9 1749334 1749754 -116112873 + L2 LINE L2 2869 3264 -8 2089 110 40 3 chr9 1751067 1751366 -116111261 - AluSx SINE Alu -2 310 1 2459 161 32 19 chr9 1751382 1751853 -116110774 - L1MB7 LINE L1 -9 6175 5699 266 254 0 0 chr9 1754632 1754691 -116107936 + MIR SINE MIR 93 151 -111 313 282 10 58 chr9 1755616 1755719 -116106908 + MIR3 SINE MIR 90 187 -21 322 253 69 11 chr9 1756464 1756551 -116106076 - MIR SINE MIR -142 120 29 1139 226 11 90 chr9 1757621 1757998 -116104629 + MLT2B1 LTR ERVL 1 347 -173 1973 209 45 5 chr9 1758007 1758533 -116104094 + LTR69 LTR ERVL 1 588 0 659 176 0 135 chr9 1758533 1758726 -116103901 + MLT2B1 LTR ERVL 352 518 -2 579 245 108 44 chr9 1758863 1759067 -116103560 - MLT1C LTR MaLR 0 467 251 3700 198 32 26 chr9 1759072 1759874 -116102753 + L1MC3 LINE L1 5863 6669 -1116 743 198 32 0 chr9 1760031 1760157 -116102470 + FLAM_A SINE Alu 1 130 -3 536 165 157 58 chr9 1760582 1760703 -116101924 + FLAM_C SINE Alu 1 133 0 517 186 230 0 chr9 1761146 1761259 -116101368 - FLAM_C SINE Alu -2 141 3 24 53 0 0 chr9 1761904 1761942 -116100685 + AT_rich Low_complexity Low_complexity 1 38 0 851 192 47 5 chr9 1762248 1762441 -116100186 - L1MC4 LINE L1 -680 7362 7162 5365 133 23 52 chr9 1762562 1762713 -116099914 + L1MA9 LINE L1 5327 5481 -831 2169 115 7 0 chr9 1762713 1763018 -116099609 + AluSx SINE Alu 1 307 -5 5365 133 23 52 chr9 1763018 1763882 -116098745 + L1MA9 LINE L1 5481 6312 0 258 32 0 0 chr9 1764869 1764900 -116097727 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 611 219 15 7 chr9 1765651 1765788 -116096839 - MSTD LTR MaLR -258 138 1 397 332 57 17 chr9 1766397 1766698 -116095929 + HAL1 LINE L1 110 422 -2085 403 302 132 16 chr9 1767335 1767524 -116095103 - MIR SINE MIR -39 223 13 243 0 0 0 chr9 1767608 1767635 -116094992 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2076 112 0 10 chr9 1768922 1769236 -116093391 + AluY SINE Alu 1 311 0 7722 41 7 1 chr9 1770360 1771462 -116091165 + L1PA4 LINE L1 5037 6144 -11 222 118 0 0 chr9 1771566 1771600 -116091027 + (TC)n Simple_repeat Simple_repeat 2 35 0 871 356 47 14 chr9 1771942 1772515 -116090112 - L2 LINE L2 -1102 2212 1621 399 21 0 0 chr9 1772554 1772602 -116090025 + (TC)n Simple_repeat Simple_repeat 1 48 0 2007 206 104 50 chr9 1772890 1773464 -116089163 - MLT1E3 LTR MaLR 0 624 20 201 94 0 0 chr9 1773579 1773611 -116089016 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2317 98 0 0 chr9 1773615 1773911 -116088716 - AluY SINE Alu -15 296 1 854 78 0 0 chr9 1774150 1774252 -116088375 + L1PA8 LINE L1 6057 6158 -14 916 266 72 26 chr9 1774293 1774598 -116088029 + L1M4b LINE L1 1062 1380 -5479 502 264 119 6 chr9 1774896 1775249 -116087378 + MLT1H LTR MaLR 138 549 0 302 291 30 79 chr9 1776049 1776214 -116086413 + MIR SINE MIR 12 168 -94 417 259 118 30 chr9 1776313 1776448 -116086179 + MIR SINE MIR 14 160 -102 2090 56 0 0 chr9 1776457 1776708 -116085919 - L1PA2 LINE L1 -403 5752 5502 3836 21 0 0 chr9 1776708 1777126 -116085501 + L1PA2 LINE L1 5737 6155 0 2174 186 74 9 chr9 1777494 1777929 -116084698 - L1MB2 LINE L1 -23 6148 5686 359 292 62 9 chr9 1778566 1778679 -116083948 + L2 LINE L2 3179 3297 -16 1583 176 61 3 chr9 1779426 1779721 -116082906 + AluJb SINE Alu 1 312 0 3483 70 2 0 chr9 1779871 1780326 -116082301 - L1PA7 LINE L1 -785 5361 4903 6171 62 6 0 chr9 1780326 1781112 -116081515 + L1PA7 LINE L1 5363 6154 0 229 282 14 84 chr9 1781122 1781193 -116081434 - MIR SINE MIR -109 99 34 184 0 97 0 chr9 1783066 1783097 -116079530 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2154 221 46 15 chr9 1783448 1783974 -116078653 - MLT1F LTR MaLR 0 542 1 202 234 9 140 chr9 1784850 1784957 -116077670 - MER5B DNA MER1_type 0 178 86 265 275 63 21 chr9 1786023 1786165 -116076462 - ERVL LTR ERVL -8 5756 5609 27 49 0 0 chr9 1786323 1786364 -116076263 + AT_rich Low_complexity Low_complexity 1 41 0 1642 209 8 48 chr9 1786499 1786877 -116075750 - MLT1A1 LTR MaLR 0 365 3 7132 205 23 64 chr9 1786890 1788236 -116074391 - MLT1A1-int LTR MaLR -6 1729 425 356 43 0 0 chr9 1788236 1788283 -116074344 + MADE1 DNA Mariner 30 76 -4 7132 205 23 64 chr9 1788283 1788692 -116073935 - MLT1A1-int LTR MaLR -1310 425 1 1475 248 19 14 chr9 1788692 1789055 -116073572 - MLT1A1 LTR MaLR 0 365 1 4864 306 71 69 chr9 1789071 1791504 -116071123 - ERVL LTR ERVL -546 5218 2677 457 258 0 0 chr9 1791504 1791597 -116071030 - MER5A DNA MER1_type -88 101 9 4864 306 71 69 chr9 1791597 1793466 -116069161 - ERVL LTR ERVL -3087 2677 814 29 0 0 0 chr9 1793737 1793766 -116068861 + AT_rich Low_complexity Low_complexity 1 29 0 2749 16 0 0 chr9 1793936 1794241 -116068386 - AluYa5 SINE Alu -6 305 1 33215 41 3 2 chr9 1794244 1799314 -116063313 - L1PA4 LINE L1 0 6155 1081 578 178 0 0 chr9 1799282 1799383 -116063244 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1799529 1799615 -116063012 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1800365 1800386 -116062241 + AT_rich Low_complexity Low_complexity 1 21 0 2661 286 120 15 chr9 1800641 1801886 -116060741 + L2 LINE L2 1378 2752 -562 698 270 177 32 chr9 1802106 1802513 -116060114 + L2 LINE L2 2848 3313 0 1307 184 46 158 chr9 1803750 1804276 -116058351 - MLT1C LTR MaLR 0 467 1 518 321 29 24 chr9 1804993 1805239 -116057388 + MIR SINE MIR 2 248 -14 236 178 0 0 chr9 1806304 1806349 -116056278 - MADE1 DNA Mariner -6 74 30 2385 146 56 15 chr9 1806430 1806841 -116055786 + MSTA LTR MaLR 1 428 0 231 236 131 75 chr9 1807288 1807554 -116055073 + LTR16C LTR ERVL 163 476 -15 230 309 52 109 chr9 1807677 1808097 -116054530 + L2 LINE L2 2869 3264 -8 2086 110 40 3 chr9 1809410 1809709 -116052918 - AluSx SINE Alu -2 310 1 2235 161 32 19 chr9 1809725 1810196 -116052431 - L1MB7 LINE L1 -9 6175 5699 270 254 0 0 chr9 1812975 1813034 -116049593 + MIR SINE MIR 93 151 -111 309 282 10 58 chr9 1813959 1814062 -116048565 + MIR3 SINE MIR 90 187 -21 321 253 69 11 chr9 1814807 1814894 -116047733 - MIR SINE MIR -142 120 29 1009 225 11 91 chr9 1815964 1816338 -116046289 + MLT2B1 LTR ERVL 1 344 -176 1811 209 45 5 chr9 1816350 1816876 -116045751 + LTR69 LTR ERVL 1 588 0 584 176 0 135 chr9 1816876 1817069 -116045558 + MLT2B1 LTR ERVL 352 518 -2 500 250 108 44 chr9 1817206 1817410 -116045217 - MLT1C LTR MaLR 0 467 251 5996 176 94 75 chr9 1817415 1818639 -116043988 + L1MC3 LINE L1 5863 7219 -566 230 264 33 33 chr9 1818639 1818730 -116043897 + MLT1F1 LTR MaLR 35 125 -442 5996 176 94 75 chr9 1818730 1819111 -116043516 + L1MC3 LINE L1 7219 7591 -194 862 174 60 0 chr9 1819114 1819298 -116043329 + L1MC2 LINE L1 6137 6331 -13 604 248 8 0 chr9 1820092 1820217 -116042410 + FLAM_A SINE Alu 1 126 -16 24 0 0 0 chr9 1820235 1820259 -116042368 + AT_rich Low_complexity Low_complexity 1 24 0 321 169 17 0 chr9 1820506 1820565 -116042062 - L1MB7 LINE L1 -445 5721 5662 669 70 85 4 chr9 1820565 1820837 -116041790 + (TA)n Simple_repeat Simple_repeat 1 293 0 206 108 92 15 chr9 1820838 1820903 -116041724 + (TTATA)n Simple_repeat Simple_repeat 2 71 0 627 96 39 34 chr9 1820907 1821085 -116041542 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 188 35 35 0 chr9 1821105 1821134 -116041493 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 186 98 59 0 chr9 1821243 1821294 -116041333 + (TA)n Simple_repeat Simple_repeat 1 54 0 63 14 0 0 chr9 1821294 1821364 -116041263 + AT_rich Low_complexity Low_complexity 1 70 0 538 96 45 39 chr9 1821364 1821542 -116041085 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 352 184 42 24 chr9 1821542 1821710 -116040917 + (TTATA)n Simple_repeat Simple_repeat 2 172 0 5599 244 51 20 chr9 1821710 1821758 -116040869 - L1P3 LINE L1 -470 5702 5657 7290 36 0 0 chr9 1821758 1822719 -116039908 - L1PA5 LINE L1 -15 6139 5172 5599 244 51 20 chr9 1822719 1825017 -116037610 - L1P3 LINE L1 -515 5657 3269 2041 146 0 0 chr9 1825217 1825504 -116037123 + AluSx SINE Alu 1 287 -25 494 154 22 7 chr9 1825504 1825640 -116036987 + (TA)n Simple_repeat Simple_repeat 1 138 0 2739 3 0 3 chr9 1825696 1825998 -116036629 + AluYa5 SINE Alu 1 301 -10 2229 246 14 26 chr9 1826474 1827043 -116035584 - MLT1F1 LTR MaLR -2 565 4 1327 176 12 8 chr9 1827120 1827376 -116035251 - L1 LINE L1 -2316 3830 3574 1818 143 0 3 chr9 1827376 1827663 -116034964 + L1PA15 LINE L1 5876 6161 -4 647 317 45 8 chr9 1828223 1828466 -116034161 + MIR SINE MIR 8 259 -3 35 16 0 49 chr9 1829065 1829126 -116033501 + AT_rich Low_complexity Low_complexity 1 58 0 199 430 52 10 chr9 1829301 1829494 -116033133 - L2 LINE L2 -215 3057 2857 312 343 60 69 chr9 1830624 1830974 -116031653 + HAL1 LINE L1 1 347 -2160 703 267 133 39 chr9 1831260 1831747 -116030880 + HAL1 LINE L1 812 1344 -1163 2335 88 0 35 chr9 1833476 1833795 -116028832 - AluSg SINE Alu -2 308 1 216 298 0 0 chr9 1834602 1834659 -116027968 + GA-rich Low_complexity Low_complexity 1 57 0 2123 157 15 3 chr9 1835142 1835480 -116027147 - MER2 DNA MER2_type 0 344 3 313 268 0 57 chr9 1835626 1835749 -116026878 - L3 LINE CR1 -300 1277 1162 492 246 56 56 chr9 1835766 1835908 -116026719 - MER5A DNA MER1_type -21 168 27 485 285 163 36 chr9 1836083 1836444 -116026183 - L3 LINE CR1 -576 1001 595 385 95 0 119 chr9 1836463 1836547 -116026080 - MLT1D LTR MaLR -2 503 430 8551 97 7 8 chr9 1836553 1838502 -116024125 - L1PA7 LINE L1 0 6154 4188 7640 92 12 4 chr9 1838502 1839585 -116023042 - L1PA7 LINE L1 -3413 2733 1642 1424 207 153 26 chr9 1839589 1839976 -116022651 - MLT1D LTR MaLR -69 436 1 302 343 50 34 chr9 1840026 1840217 -116022410 - MIR SINE MIR -50 212 20 486 315 144 5 chr9 1840217 1840439 -116022188 - L3 LINE CR1 -1029 548 296 266 294 102 37 chr9 1841144 1841331 -116021296 + L2 LINE L2 2069 2267 -1047 982 174 35 6 chr9 1841643 1841815 -116020812 - MER5B DNA MER1_type 0 178 2 565 317 66 21 chr9 1842226 1842469 -116020158 + MIR SINE MIR 6 259 -3 184 294 29 29 chr9 1842563 1842631 -116019996 + L2 LINE L2 3244 3311 -2 219 139 0 0 chr9 1843376 1843402 -116019225 + (CA)n Simple_repeat Simple_repeat 2 30 -14 1514 180 115 49 chr9 1843402 1843768 -116018859 + MLT1B LTR MaLR 1 390 0 219 139 0 0 chr9 1843768 1843784 -116018843 + (CA)n Simple_repeat Simple_repeat 29 44 0 2164 111 7 0 chr9 1844001 1844289 -116018338 + AluSx SINE Alu 1 290 -22 28 29 0 0 chr9 1844289 1844324 -116018303 + AT_rich Low_complexity Low_complexity 1 35 0 480 302 135 14 chr9 1844607 1844829 -116017798 - MIR SINE MIR -3 259 11 5011 158 66 33 chr9 1845224 1845379 -116017248 + L1MC3 LINE L1 6709 6857 -928 225 0 0 0 chr9 1845379 1845404 -116017223 + (CA)n Simple_repeat Simple_repeat 2 26 0 5011 158 66 33 chr9 1845404 1846290 -116016337 + L1MC3 LINE L1 6857 7785 0 872 296 51 12 chr9 1846795 1847219 -116015408 - LTR16B LTR ERVL 0 464 1 293 109 0 0 chr9 1847887 1847933 -116014694 + MADE1 DNA Mariner 1 46 -34 268 179 0 71 chr9 1850326 1850382 -116012245 + L3 LINE CR1 1524 1575 -2 2156 117 0 0 chr9 1850591 1850874 -116011753 + AluSx SINE Alu 1 283 -29 1031 294 40 62 chr9 1851013 1851435 -116011192 - MER115 DNA AcHobo -271 422 10 268 380 23 8 chr9 1852012 1852141 -116010486 - MIR SINE MIR -62 146 16 253 253 11 46 chr9 1852218 1852305 -116010322 + L2 LINE L2 3229 3312 -1 256 247 101 0 chr9 1852993 1853082 -116009545 - MER113 DNA MER1_type? -420 101 4 395 277 107 0 chr9 1853086 1853198 -116009429 - MIR3 SINE MIR -49 159 36 267 306 0 0 chr9 1853463 1853555 -116009072 - MIR SINE MIR -62 146 66 321 251 156 52 chr9 1854299 1854354 -116008273 - MIR SINE MIR -18 244 196 1774 171 72 93 chr9 1854354 1854829 -116007798 - MLT1C LTR MaLR 0 467 3 321 251 156 52 chr9 1854829 1854984 -116007643 - MIR SINE MIR -66 196 12 798 253 30 47 chr9 1855110 1855205 -116007422 - MIR SINE MIR -8 254 159 1929 113 49 7 chr9 1855205 1855489 -116007138 - AluSx SINE Alu -16 296 1 798 253 30 47 chr9 1855489 1855626 -116007001 - MIR SINE MIR -103 159 26 576 232 99 72 chr9 1856921 1857130 -116005497 - MER102b DNA MER1_type -1093 335 116 468 0 0 0 chr9 1857130 1857182 -116005445 + (TG)n Simple_repeat Simple_repeat 2 53 0 576 232 99 72 chr9 1857182 1857235 -116005392 - MER102b DNA MER1_type -1312 116 66 356 198 214 57 chr9 1857249 1857441 -116005186 - MLT1H LTR MaLR -7 548 327 427 164 0 0 chr9 1857815 1857888 -116004739 + AluS SINE Alu 2 74 -238 550 275 38 30 chr9 1857906 1858182 -116004445 - MLT1H LTR MaLR -292 257 10 794 269 34 8 chr9 1858251 1858485 -116004142 + MIR SINE MIR 7 246 -16 1834 151 12 107 chr9 1858497 1858928 -116003699 - MLT1B LTR MaLR 0 390 1 315 280 27 13 chr9 1859014 1859164 -116003463 + (TA)n Simple_repeat Simple_repeat 2 153 0 1811 203 29 29 chr9 1859985 1860359 -116002268 + MLT1A2 LTR MaLR 1 374 0 668 280 114 4 chr9 1860684 1860920 -116001707 + MIR SINE MIR 1 262 0 353 316 186 0 chr9 1862659 1862874 -115999753 + MLT1L LTR MaLR 90 344 -271 2260 122 21 24 chr9 1863232 1863568 -115999059 - MER1B DNA MER1_type 0 337 3 4186 69 19 4 chr9 1863856 1864379 -115998248 + L1PA7 LINE L1 5624 6154 0 507 191 9 45 chr9 1864662 1864772 -115997855 + MER97b DNA MER1_type? 74 179 -874 2245 110 0 7 chr9 1865201 1865502 -115997125 + AluSx SINE Alu 1 299 -13 643 286 44 15 chr9 1865504 1865707 -115996920 + MLT1L LTR MaLR 394 602 -13 202 235 12 141 chr9 1866152 1866237 -115996390 - L2 LINE L2 -3 3269 3196 23 0 0 0 chr9 1867017 1867040 -115995587 + AT_rich Low_complexity Low_complexity 1 23 0 614 147 7 73 chr9 1867109 1867245 -115995382 - L1MB1 LINE L1 -26 6163 6037 276 289 133 16 chr9 1867522 1867650 -115994977 - L3 LINE CR1 -1 1576 1434 2535 175 17 7 chr9 1867739 1868161 -115994466 + MSTB LTR MaLR 1 426 0 2306 83 0 51 chr9 1868176 1868488 -115994139 + AluSc SINE Alu 1 296 -13 8357 189 41 22 chr9 1868489 1870105 -115992522 + MSTB-int LTR MaLR 6 1651 0 2228 188 57 5 chr9 1870105 1870510 -115992117 + MSTB LTR MaLR 1 426 0 798 69 0 0 chr9 1870545 1870647 -115991980 - L1PB1 LINE L1 0 6151 6050 257 274 0 14 chr9 1870653 1870726 -115991901 - L3 LINE CR1 -292 1285 1214 293 269 146 23 chr9 1871343 1871473 -115991154 - L3 LINE CR1 -426 1151 1006 900 316 39 31 chr9 1872255 1872670 -115989957 - LTR16C LTR ERVL -1 490 73 724 284 91 12 chr9 1873158 1873401 -115989226 + MIR SINE MIR 1 262 0 6351 216 52 28 chr9 1873851 1875091 -115987536 + L1MA5 LINE L1 13 1222 -5986 2091 58 0 0 chr9 1875091 1875334 -115987293 - L1PA5 LINE L1 0 6154 5912 6351 216 52 28 chr9 1875334 1875479 -115987148 + L1MA5 LINE L1 1222 1362 -5846 276 30 0 0 chr9 1875479 1875512 -115987115 + (CA)n Simple_repeat Simple_repeat 2 34 0 6351 216 52 28 chr9 1875512 1875879 -115986748 + L1MA5 LINE L1 1362 1719 -5489 2240 120 0 3 chr9 1875879 1876188 -115986439 + AluSx SINE Alu 1 308 -4 6351 216 52 28 chr9 1876188 1877319 -115985308 + L1MA5 LINE L1 1719 3845 -3363 * 25807 74 12 2 chr9 1877311 1881552 -115981075 + L1PA6 LINE L1 1872 6154 0 338 308 77 19 chr9 1881580 1881736 -115980891 + L1ME4a LINE L1 5956 6120 -1 2418 190 57 17 chr9 1881801 1882275 -115980352 + MER68 LTR ERV1 1 493 -69 6320 179 50 24 chr9 1882275 1885637 -115976990 + L1MA5 LINE L1 3822 7345 -17 1973 143 0 22 chr9 1885676 1885990 -115976637 + AluSx SINE Alu 1 307 -5 215 289 19 39 chr9 1886965 1887069 -115975558 + MIR3 SINE MIR 99 200 -8 240 255 170 21 chr9 1887169 1887263 -115975364 - L2 LINE L2 -5 3267 3160 1105 192 151 49 chr9 1889427 1889671 -115972956 + L1ME1 LINE L1 5753 6049 -117 469 261 18 0 chr9 1889671 1889782 -115972845 - MER81 DNA DNA 0 114 2 1105 192 151 49 chr9 1889782 1889907 -115972720 + L1ME1 LINE L1 6049 6160 -6 248 280 32 21 chr9 1889938 1890031 -115972596 + L2 LINE L2 3139 3232 -40 231 268 85 78 chr9 1890231 1890384 -115972243 - MER5A DNA MER1_type 0 189 36 * 285 379 7 7 chr9 1890250 1890395 -115972232 + MER5B DNA MER1_type 21 165 -13 278 193 72 60 chr9 1890770 1890853 -115971774 + MIR3 SINE MIR 118 201 -7 2054 129 0 10 chr9 1891248 1891551 -115971076 + AluSx SINE Alu 1 300 -12 1966 149 10 72 chr9 1891734 1892150 -115970477 - MLT1B LTR MaLR 0 390 1 234 258 161 32 chr9 1893301 1893425 -115969202 + MIR SINE MIR 122 261 -1 473 279 55 22 chr9 1893861 1894044 -115968583 - MIR SINE MIR -49 213 25 2293 107 0 3 chr9 1894672 1894972 -115967655 - AluSp SINE Alu -14 299 1 566 124 0 11 chr9 1894972 1895061 -115967566 - AluSc SINE Alu -5 304 217 286 391 50 11 chr9 1896318 1896497 -115966130 + L2 LINE L2 3085 3270 -2 646 309 34 27 chr9 1896634 1896896 -115965731 - LTR16A LTR ERVL -170 280 17 2189 272 79 49 chr9 1897062 1898155 -115964472 - L2 LINE L2 -4 3309 2175 207 204 0 37 chr9 1898392 1898446 -115964181 - L2 LINE L2 -1143 2171 2120 353 258 105 37 chr9 1898686 1899010 -115963617 + MLT1I LTR MaLR 53 542 0 296 395 7 7 chr9 1899033 1899180 -115963447 + MIR SINE MIR 111 257 -5 2052 171 25 3 chr9 1901169 1901526 -115961101 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr9 1901955 1901990 -115960637 + AT_rich Low_complexity Low_complexity 1 35 0 228 189 57 19 chr9 1902048 1902154 -115960473 + (TA)n Simple_repeat Simple_repeat 1 110 0 203 188 0 0 chr9 1902244 1902276 -115960351 - L2 LINE L2 -71 3242 3211 237 245 167 34 chr9 1902295 1902499 -115960128 - MARNA DNA Mariner -149 437 207 312 293 40 0 chr9 1903037 1903112 -115959515 - MIR SINE MIR -61 147 70 242 160 0 40 chr9 1903564 1903614 -115959013 - L2 LINE L2 -8 3305 3258 319 325 26 0 chr9 1903621 1903735 -115958892 - L1ME4a LINE L1 -254 5867 5751 195 389 11 0 chr9 1903950 1904040 -115958587 - L2 LINE L2 -2 3270 3180 2222 192 56 29 chr9 1904211 1904733 -115957894 - MLT1F LTR MaLR 0 542 7 236 274 116 0 chr9 1905653 1905748 -115956879 + MLT1K LTR MaLR 373 478 -110 1682 156 158 24 chr9 1905957 1906367 -115956260 + MLT1C LTR MaLR 3 467 0 195 69 0 0 chr9 1906490 1906519 -115956108 + (CA)n Simple_repeat Simple_repeat 2 30 0 274 245 39 0 chr9 1906589 1906691 -115955936 - L1ME3A LINE L1 -271 5899 5794 442 276 133 56 chr9 1907395 1907786 -115954841 + MLT1L LTR MaLR 195 615 0 194 304 0 0 chr9 1907916 1907962 -115954665 - MIR SINE MIR -69 139 94 180 111 0 0 chr9 1908354 1908381 -115954246 + (T)n Simple_repeat Simple_repeat 1 27 0 2144 128 0 19 chr9 1911448 1911761 -115950866 - AluSg SINE Alu -3 307 1 242 257 86 0 chr9 1912812 1912882 -115949745 - MIR3 SINE MIR -15 193 118 269 286 22 22 chr9 1913072 1913163 -115949464 - HAL1 LINE L1 -172 2335 2245 21 57 0 0 chr9 1913396 1913431 -115949196 + AT_rich Low_complexity Low_complexity 1 35 0 387 269 42 12 chr9 1913914 1914081 -115948546 - LTR33A LTR ERVL -2 521 350 474 235 55 67 chr9 1914503 1914758 -115947869 - HAL1 LINE L1 -803 1704 1453 195 114 0 0 chr9 1914760 1914795 -115947832 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 527 272 38 54 chr9 1914810 1915049 -115947578 + L2 LINE L2 2521 2755 -559 310 249 18 0 chr9 1915049 1915136 -115947491 - MLT1J2 LTR MaLR 0 550 461 184 299 221 31 chr9 1915573 1915700 -115946927 - L2 LINE L2 -1 3271 3121 231 281 65 69 chr9 1915719 1915950 -115946677 + HAL1b LINE L1 219 448 -900 7657 218 20 17 chr9 1916224 1916632 -115945995 + L1 LINE L1 2633 3038 -3108 2364 86 3 0 chr9 1916632 1916934 -115945693 + AluY SINE Alu 1 303 -8 7657 218 20 17 chr9 1916934 1918579 -115944048 + L1 LINE L1 3038 4693 -1453 4847 149 50 3 chr9 1918579 1919578 -115943049 + L1PA16 LINE L1 5116 6157 -9 21 36 0 0 chr9 1919578 1919606 -115943021 + AT_rich Low_complexity Low_complexity 1 28 0 1842 173 17 11 chr9 1919755 1920107 -115942520 + THE1A LTR MaLR 2 355 0 11404 101 14 0 chr9 1920107 1921665 -115940962 + THE1A-int LTR MaLR 1 1580 0 2038 153 14 11 chr9 1921665 1922019 -115940608 + THE1A LTR MaLR 1 355 0 2079 133 0 0 chr9 1922056 1922364 -115940263 - AluSc SINE Alu 0 308 1 195 114 0 0 chr9 1922509 1922544 -115940083 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 268 315 14 0 chr9 1922550 1922623 -115940004 - L2 LINE L2 -4 3309 3236 301 26 0 0 chr9 1922768 1922807 -115939820 + U5 snRNA snRNA 6 44 -72 813 261 86 34 chr9 1923106 1923489 -115939138 - MLT1J2 LTR MaLR -44 406 4 1932 143 71 13 chr9 1924632 1925011 -115937616 - L1MB3 LINE L1 -8 6175 5775 1569 56 0 0 chr9 1925097 1925292 -115937335 + L1PA11 LINE L1 5980 6174 0 533 297 78 47 chr9 1925337 1925745 -115936882 - LTR16C LTR ERVL -10 481 61 762 291 80 40 chr9 1925862 1926237 -115936390 - MLT1J2 LTR MaLR -57 393 4 410 251 64 35 chr9 1926797 1926869 -115935758 + L1ME LINE L1 5579 5647 -474 789 284 219 7 chr9 1926869 1927299 -115935328 + LTR33 LTR ERVL 1 521 0 410 251 64 35 chr9 1927299 1927397 -115935230 + L1ME LINE L1 5647 5754 -367 183 129 0 0 chr9 1927695 1927726 -115934901 + (A)n Simple_repeat Simple_repeat 1 31 0 250 281 231 0 chr9 1927869 1927990 -115934637 - MIR SINE MIR -8 254 106 678 283 197 49 chr9 1928218 1928784 -115933843 - L2 LINE L2 -4 3309 2669 189 0 0 0 chr9 1928871 1928892 -115933735 + (A)n Simple_repeat Simple_repeat 1 21 0 1202 224 131 57 chr9 1928919 1929424 -115933203 - MLT1F LTR MaLR 0 542 1 323 296 25 96 chr9 1980553 1980752 -115881875 + MIR SINE MIR 1 185 -77 523 202 9 9 chr9 1980913 1981022 -115881605 + L2 LINE L2 3205 3313 0 2431 68 0 3 chr9 1983123 1983415 -115879212 - AluY SINE Alu -20 291 1 220 158 35 35 chr9 1984238 1984295 -115878332 + A-rich Low_complexity Low_complexity 2 58 0 875 315 99 19 chr9 1985508 1985930 -115876697 - L2 LINE L2 0 3313 2858 241 338 151 0 chr9 1987385 1987524 -115875103 + MER91A DNA MER1_type 3 162 -34 701 307 48 35 chr9 1989468 1989865 -115872762 - L1MC5 LINE L1 -531 7430 7029 2258 91 35 0 chr9 1990080 1990366 -115872261 - AluSq SINE Alu -17 296 1 315 181 145 12 chr9 1990529 1990612 -115872015 - L1MC4 LINE L1 -136 7906 7813 498 327 77 4 chr9 1993309 1993551 -115869076 + MIR SINE MIR 3 261 -1 2182 128 3 3 chr9 1993686 1993992 -115868635 - AluSx SINE Alu -6 306 1 670 261 44 32 chr9 1994946 1995195 -115867432 + MIR SINE MIR 6 257 -5 204 329 92 40 chr9 1995202 1995354 -115867273 - L2 LINE L2 -8 3264 3105 2858 13 0 3 chr9 1995662 1995974 -115866653 - AluYa5 SINE Alu 0 311 1 264 281 135 52 chr9 1995986 1996237 -115866390 - L2 LINE L2 -248 3024 2753 248 137 0 20 chr9 1996753 1996804 -115865823 + LTR33A LTR ERVL 4 53 -470 22 0 0 0 chr9 1996824 1996846 -115865781 + AT_rich Low_complexity Low_complexity 1 22 0 559 301 56 10 chr9 1996847 1997043 -115865584 - MIR SINE MIR -56 206 2 270 344 11 11 chr9 1997524 1997617 -115865010 + MIR3 SINE MIR 67 159 -49 213 39 0 0 chr9 1997780 1997806 -115864821 + (TG)n Simple_repeat Simple_repeat 1 26 0 403 326 7 14 chr9 1997817 1997955 -115864672 - MIR SINE MIR -98 164 28 209 188 0 75 chr9 1998612 1998692 -115863935 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1588 175 58 7 chr9 1998726 1999017 -115863610 - AluJo SINE Alu -1 311 6 2446 74 0 3 chr9 1999113 1999409 -115863218 - AluY SINE Alu -16 295 1 686 301 122 34 chr9 1999677 2000145 -115862482 - LTR33A LTR ERVL -9 514 6 3585 39 15 2 chr9 2000205 2000664 -115861963 + L1PA5 LINE L1 5686 6150 -4 1058 193 0 14 chr9 2004061 2004268 -115858359 - L1MB3 LINE L1 -344 5839 5636 2593 102 5 8 chr9 2005587 2005961 -115856666 - THE1C LTR MaLR 0 375 3 251 188 42 0 chr9 2007703 2007751 -115854876 + MIR SINE MIR 94 143 -119 869 237 54 0 chr9 2011365 2011551 -115851076 + Tigger7 DNA MER2_type 7 202 -503 413 267 10 0 chr9 2011998 2012099 -115850528 + MLT1E2 LTR MaLR 518 619 -7 2200 122 0 10 chr9 2012656 2012960 -115849667 + AluSx SINE Alu 2 302 -10 2335 103 3 3 chr9 2014780 2015091 -115847536 - AluY SINE Alu 0 311 1 2246 128 0 3 chr9 2015258 2015564 -115847063 - AluSx SINE Alu -7 305 1 387 312 46 34 chr9 2016224 2016432 -115846195 - MIR SINE MIR -19 243 37 197 160 0 40 chr9 2017186 2017236 -115845391 + GA-rich Low_complexity Low_complexity 3 50 0 1430 216 96 35 chr9 2019260 2019750 -115842877 - MLT2B1 LTR ERVL 0 520 1 261 338 42 0 chr9 2020228 2020370 -115842257 + MER5A DNA MER1_type 40 187 -2 306 73 0 0 chr9 2020384 2020425 -115842202 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 340 327 7 4 chr9 2021196 2021485 -115841142 + (CA)n Simple_repeat Simple_repeat 1 290 0 238 216 98 49 chr9 2022269 2022371 -115840256 + LTR16C LTR ERVL 385 491 0 247 286 36 0 chr9 2022957 2023041 -115839586 - MIR SINE MIR -70 138 52 376 321 47 21 chr9 2024527 2024720 -115837907 - L1MEd LINE L1 -5920 199 2 239 312 128 0 chr9 2024838 2024963 -115837664 - L1M4 LINE L1 -1988 4158 4018 7596 17 0 0 chr9 2024969 2026304 -115836323 - L1PA3 LINE L1 0 6155 4821 6117 38 3 0 chr9 2026304 2027078 -115835549 + L1P LINE L1 3790 4565 -1581 220 320 70 55 chr9 2028460 2028588 -115834039 - L2 LINE L2 -1 3271 3142 1184 282 73 18 chr9 2029554 2030047 -115832580 - LTR33 LTR ERVL 0 521 2 391 252 137 33 chr9 2031120 2031349 -115831278 - MLT1G3 LTR MaLR -171 371 135 276 313 172 0 chr9 2032011 2032139 -115830488 + MIR SINE MIR 57 206 -56 583 203 0 34 chr9 2032201 2032319 -115830308 - MER58B DNA MER1_type -1 340 227 249 366 16 52 chr9 2033647 2033841 -115828786 + MIR SINE MIR 6 192 -70 930 247 113 53 chr9 2034120 2034342 -115828285 + MLT1L LTR MaLR 1 208 -303 850 252 61 0 chr9 2034342 2034588 -115828039 - MIR SINE MIR 0 262 2 930 247 113 53 chr9 2034588 2034921 -115827706 + MLT1L LTR MaLR 208 507 -4 204 313 38 12 chr9 2035014 2035094 -115827533 + L3 LINE CR1 1480 1561 -16 961 135 7 0 chr9 2035436 2035584 -115827043 + THE1B LTR MaLR 216 364 0 10081 98 37 40 chr9 2035584 2037169 -115825458 + THE1B-int LTR MaLR 1 1580 0 2616 110 0 0 chr9 2037169 2037533 -115825094 + THE1B LTR MaLR 1 364 0 303 378 58 29 chr9 2037543 2037784 -115824843 + L1 LINE L1 4531 4778 -1368 2550 66 0 3 chr9 2037971 2038272 -115824355 + AluY SINE Alu 2 301 -10 431 241 186 0 chr9 2038433 2038578 -115824049 + MER5A DNA MER1_type 10 181 -8 2316 235 51 46 chr9 2038815 2039569 -115823058 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 2039569 2039844 -115822783 - AluJb SINE Alu -18 294 1 2316 235 51 46 chr9 2039844 2039855 -115822772 - L1M4 LINE L1 -2538 3608 3599 673 249 80 20 chr9 2039850 2040051 -115822576 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 2040293 2040369 -115822258 - L1MD2 LINE L1 -543 5699 5606 * 478 242 113 36 chr9 2040368 2040562 -115822065 - L1M4 LINE L1 -2523 3623 3415 504 336 195 23 chr9 2041180 2042014 -115820613 + L2 LINE L2 1167 2144 -1170 5256 88 11 49 chr9 2042071 2043103 -115819524 + L1MA3 LINE L1 4182 6287 -18 5256 102 13 45 chr9 2043103 2043832 -115818795 + L1MA3 LINE L1 5423 6119 -186 2618 64 0 10 chr9 2043832 2044146 -115818481 + AluY SINE Alu 1 311 0 5256 102 13 45 chr9 2044146 2044327 -115818300 + L1MA3 LINE L1 6119 6304 -1 5256 88 11 49 chr9 2044327 2044345 -115818282 + L1MA3 LINE L1 6287 6304 -1 25 0 0 0 chr9 2044367 2044392 -115818235 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 2044558 2044583 -115818044 + AT_rich Low_complexity Low_complexity 1 25 0 1020 160 0 0 chr9 2044583 2044727 -115817900 - AluSg/x SINE Alu -23 289 146 2507 79 0 3 chr9 2047309 2047613 -115815014 + AluY SINE Alu 1 303 -8 1135 146 0 6 chr9 2047613 2047784 -115814843 + AluSp SINE Alu 134 303 -10 276 165 21 62 chr9 2048235 2048332 -115814295 + (CAGAGA)n Simple_repeat Simple_repeat 6 98 0 2545 237 43 42 chr9 2048445 2049233 -115813394 - L1ME1 LINE L1 -4 6162 5374 678 260 128 78 chr9 2050637 2051236 -115811391 + Charlie7 DNA MER1_type 48 676 -1936 472 346 15 5 chr9 2051985 2052190 -115810437 + MIR SINE MIR 53 259 -3 375 122 22 33 chr9 2052297 2052387 -115810240 + L1MA9 LINE L1 6207 6295 -17 3760 142 15 3 chr9 2059149 2059761 -115802866 + LTR31 LTR ERV1 1 619 0 2092 103 33 0 chr9 2059941 2060245 -115802382 + AluSx SINE Alu 1 313 0 38 61 0 0 chr9 2060408 2060474 -115802153 + AT_rich Low_complexity Low_complexity 1 66 0 2383 88 0 0 chr9 2063875 2064172 -115798455 + AluSg SINE Alu 1 297 -13 23 54 0 0 chr9 2064188 2064225 -115798402 + AT_rich Low_complexity Low_complexity 1 37 0 1974 141 39 33 chr9 2064249 2064611 -115798016 - THE1B LTR MaLR 0 364 1 311 0 26 0 chr9 2065582 2065621 -115797006 + (TG)n Simple_repeat Simple_repeat 2 41 0 604 292 23 88 chr9 2066173 2066604 -115796023 + L2 LINE L2 2649 3054 -218 940 215 21 0 chr9 2066613 2066799 -115795828 - MER58A DNA MER1_type 0 224 35 295 241 38 13 chr9 2066928 2067007 -115795620 + L2 LINE L2 3225 3305 -8 237 65 0 0 chr9 2067082 2067113 -115795514 + (TG)n Simple_repeat Simple_repeat 1 31 0 227 79 26 0 chr9 2067113 2067151 -115795476 + (GA)n Simple_repeat Simple_repeat 2 40 0 1869 203 29 61 chr9 2067277 2067547 -115795080 + L1MA9 LINE L1 5832 6109 -203 2632 49 0 3 chr9 2067547 2067851 -115794776 + AluY SINE Alu 1 303 -8 1869 203 29 61 chr9 2067851 2068026 -115794601 + L1MA9 LINE L1 6109 6262 -50 1854 166 0 7 chr9 2068026 2068315 -115794312 - AluJo SINE Alu -25 287 1 1869 203 29 61 chr9 2068315 2068360 -115794267 + L1MA9 LINE L1 6262 6307 -5 21 36 0 0 chr9 2068369 2068397 -115794230 + AT_rich Low_complexity Low_complexity 1 28 0 456 312 133 48 chr9 2068506 2068881 -115793746 - MLT1K LTR MaLR -33 555 149 245 279 58 0 chr9 2072080 2072184 -115790443 + MIR SINE MIR 29 138 -124 185 189 0 0 chr9 2072185 2072222 -115790405 + L2 LINE L2 3213 3249 -23 236 241 69 103 chr9 2072881 2072936 -115789691 - MLT1C LTR MaLR -15 452 397 1961 66 0 0 chr9 2072936 2073192 -115789435 + L1PA5 LINE L1 5898 6153 -1 236 241 69 103 chr9 2073192 2073310 -115789317 - MLT1C LTR MaLR -70 397 285 231 235 69 39 chr9 2073357 2073459 -115789168 - MLT1C LTR MaLR -273 194 90 1068 222 28 131 chr9 2074394 2074853 -115787774 - MLT2D LTR ERVL 0 414 3 538 26 26 93 chr9 2074975 2075168 -115787459 + (TA)n Simple_repeat Simple_repeat 1 180 0 324 252 52 102 chr9 2075172 2075545 -115787082 - L1MC5 LINE L1 -204 8037 1980 440 169 0 0 chr9 2076109 2076186 -115786441 + MLT1F1 LTR MaLR 491 567 0 2235 78 58 3 chr9 2077635 2077930 -115784697 + AluY SINE Alu 1 311 0 314 251 115 20 chr9 2078084 2078202 -115784425 - MIR SINE MIR -46 162 33 2206 246 46 26 chr9 2080154 2080286 -115782341 + MER67C LTR ERV1 1 129 -581 2179 103 13 3 chr9 2080286 2080588 -115782039 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 2080588 2081151 -115781476 + MER67C LTR ERV1 129 710 0 668 195 157 5 chr9 2082198 2082408 -115780219 + MLT1D LTR MaLR 107 348 -157 234 245 28 56 chr9 2084635 2084778 -115777849 + CT-rich Low_complexity Low_complexity 3 141 0 208 239 15 15 chr9 2086090 2086157 -115776470 + CT-rich Low_complexity Low_complexity 1 67 0 2123 101 7 3 chr9 2086531 2086828 -115775799 + AluSq SINE Alu 1 298 -15 505 149 0 28 chr9 2086839 2086946 -115775681 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 1072 101 12 0 chr9 2086959 2087128 -115775499 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 288 0 0 0 chr9 2087132 2087164 -115775463 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 610 315 0 28 chr9 2088254 2088432 -115774195 + MLT1G1 LTR MaLR 1 173 -422 756 269 14 5 chr9 2088577 2088789 -115773838 + MLT1G1 LTR MaLR 176 389 -206 2442 254 94 11 chr9 2092787 2093539 -115769088 - MER21B LTR ERV1 0 863 49 297 294 0 0 chr9 2093550 2093618 -115769009 - MER21B LTR ERV1 -777 86 19 321 185 48 23 chr9 2093725 2093813 -115768814 + MLT1E2 LTR MaLR 122 208 -329 265 259 0 0 chr9 2094135 2094193 -115768434 + MARNA DNA Mariner 436 493 -93 351 0 0 0 chr9 2095834 2095873 -115766754 + (TTA)n Simple_repeat Simple_repeat 2 40 0 439 234 43 0 chr9 2095998 2096092 -115766535 + MIR SINE MIR 87 184 -78 686 233 0 0 chr9 2096110 2096243 -115766384 + L1MD1 LINE L1 5599 5731 -511 1769 221 48 0 chr9 2096250 2096601 -115766026 - MER74A LTR ERVL 0 558 191 3573 137 103 46 chr9 2096601 2097403 -115765224 + MER21A LTR ERV1 1 915 -16 779 184 61 31 chr9 2097444 2097607 -115765020 - MER74A LTR ERVL -390 168 1 539 138 43 11 chr9 2097611 2097705 -115764922 + L1MD1 LINE L1 5764 5860 -499 491 233 153 25 chr9 2097716 2097879 -115764748 + L1MD1 LINE L1 5992 6175 -67 5488 166 58 28 chr9 2097984 2098436 -115764191 - L1M2 LINE L1 -819 5493 5056 1606 27 0 0 chr9 2098436 2098620 -115764007 - AluY SINE Alu -127 184 1 5488 166 58 28 chr9 2098620 2098710 -115763917 - L1M2 LINE L1 -1256 5056 4970 2384 171 17 2 chr9 2098710 2099132 -115763495 - MSTC LTR MaLR 0 428 1 5488 166 58 28 chr9 2099132 2099584 -115763043 - L1M2 LINE L1 -1342 4970 4533 2092 113 7 0 chr9 2099584 2099885 -115762742 - AluSq SINE Alu -10 303 1 5488 166 58 28 chr9 2099885 2100261 -115762366 - L1M2 LINE L1 -1779 4533 3998 316 275 50 33 chr9 2100415 2100535 -115762092 - L1MEd LINE L1 -5298 821 700 35420 52 6 3 chr9 2100711 2105114 -115757513 - L1P LINE L1 -1316 4830 414 198 24 24 49 chr9 2105188 2105229 -115757398 + (TA)n Simple_repeat Simple_repeat 1 40 0 465 302 9 0 chr9 2105362 2105468 -115757159 + MIR SINE MIR 45 151 -111 481 233 74 5 chr9 2105469 2105632 -115756995 + MER63 DNA MER1_type 1 1656 -32 401 246 18 45 chr9 2105634 2105744 -115756883 + MIR SINE MIR 156 262 0 231 190 0 0 chr9 2105900 2105958 -115756669 + T-rich Low_complexity Low_complexity 1 58 0 2942 169 5 46 chr9 2106835 2107425 -115755202 - L1MB3 LINE L1 -177 6006 5441 240 111 0 0 chr9 2111157 2111193 -115751434 + (A)n Simple_repeat Simple_repeat 1 36 0 653 270 61 22 chr9 2112193 2112423 -115750204 - MIR SINE MIR -16 246 8 22 35 0 0 chr9 2115314 2115343 -115747284 + AT_rich Low_complexity Low_complexity 1 29 0 832 273 164 49 chr9 2117141 2117629 -115744998 - LTR67 LTR ERVL -11 546 3 1809 147 7 0 chr9 2119062 2119341 -115743286 + AluJb SINE Alu 1 281 -31 1085 139 0 0 chr9 2120125 2120298 -115742329 - AluSq SINE Alu -4 309 137 208 322 34 93 chr9 2121696 2122019 -115740608 - L2 LINE L2 -7 3265 2962 522 264 31 8 chr9 2123086 2123215 -115739412 + MLT1I LTR MaLR 104 235 -174 288 0 0 0 chr9 2123592 2123624 -115739003 + (A)n Simple_repeat Simple_repeat 1 32 0 326 358 129 29 chr9 2123878 2124157 -115738470 + L2 LINE L2 2966 3272 0 23 0 0 0 chr9 2124633 2124656 -115737971 + AT_rich Low_complexity Low_complexity 1 23 0 227 296 14 0 chr9 2124660 2124731 -115737896 + L1ME LINE L1 5500 5571 -595 2282 78 0 0 chr9 2125045 2125339 -115737288 - AluSg SINE Alu -15 295 2 198 216 59 0 chr9 2125771 2125822 -115736805 - L2 LINE L2 -2 3311 3258 188 300 133 11 chr9 2126023 2126113 -115736514 - MIR SINE MIR -25 237 137 471 298 34 0 chr9 2126240 2126396 -115736231 - MER20B DNA MER1_type -23 196 30 31 0 0 0 chr9 2126513 2126544 -115736083 + AT_rich Low_complexity Low_complexity 1 31 0 280 285 53 53 chr9 2126644 2126872 -115735755 + L1MC5 LINE L1 7703 7930 -31 203 182 0 0 chr9 2127348 2127381 -115735246 + polypurine Low_complexity Low_complexity 2 34 0 329 185 0 0 chr9 2128527 2128592 -115734035 + L1MB3 LINE L1 6091 6155 -28 23 0 0 0 chr9 2128608 2128631 -115733996 + AT_rich Low_complexity Low_complexity 1 23 0 319 268 94 79 chr9 2129075 2129202 -115733425 - L2 LINE L2 -7 3265 3137 203 290 93 65 chr9 2133670 2133777 -115728850 - L2 LINE L2 -4 3309 3200 231 287 139 16 chr9 2133830 2133876 -115728751 - MER20B DNA MER1_type -604 179 140 1919 166 132 3 chr9 2133876 2134255 -115728372 + MSTA LTR MaLR 1 428 0 231 287 139 16 chr9 2134255 2134330 -115728297 - MER20B DNA MER1_type -643 140 43 252 363 98 0 chr9 2134389 2134491 -115728136 - MIR3 SINE MIR -3 205 94 553 211 11 58 chr9 2135211 2135401 -115727226 - L1MDb LINE L1 -2125 3955 3775 502 167 79 18 chr9 2135398 2135512 -115727115 - L1MB3 LINE L1 -2 6181 6061 * 1044 156 6 6 chr9 2135552 2135732 -115726895 - L1MB3 LINE L1 -89 6094 5915 3834 234 60 19 chr9 2135733 2136079 -115726548 - L1MDb LINE L1 -2292 3788 3458 1932 134 0 0 chr9 2136079 2136369 -115726258 + AluSx SINE Alu 3 292 -20 3834 234 60 19 chr9 2136369 2137213 -115725414 - L1MDb LINE L1 -2622 3458 2549 623 260 47 30 chr9 2137190 2137615 -115725012 - L1MDb LINE L1 -5170 900 463 * 276 279 93 8 chr9 2137738 2137867 -115724760 - L1MDb LINE L1 -5664 406 267 21 0 0 0 chr9 2138068 2138089 -115724538 + AT_rich Low_complexity Low_complexity 1 21 0 1869 150 0 16 chr9 2138445 2138759 -115723868 + AluJb SINE Alu 4 312 0 195 313 78 55 chr9 2138922 2139050 -115723577 - MER5B DNA MER1_type -21 157 27 333 262 24 0 chr9 2139356 2139440 -115723187 - L2 LINE L2 -4 3268 3183 408 250 22 0 chr9 2141068 2141160 -115721467 + MER58 DNA MER1_type 1 94 -247 223 317 158 17 chr9 2141699 2141819 -115720808 - L2 LINE L2 -17 3255 3119 521 228 70 82 chr9 2142164 2142493 -115720134 - L1ME4a LINE L1 -266 5855 5531 186 43 0 0 chr9 2142568 2142591 -115720036 + (TG)n Simple_repeat Simple_repeat 1 23 0 409 143 0 0 chr9 2144250 2144313 -115718314 - Tigger5 DNA MER2_type 0 2323 2261 444 200 0 12 chr9 2144344 2144424 -115718203 - Tigger5 DNA MER2_type -2244 79 1 2411 44 0 3 chr9 2145406 2145699 -115716928 - AluY SINE Alu -15 296 5 582 260 40 0 chr9 2146090 2146263 -115716364 + MER68 LTR ERV1 1 180 -382 428 200 124 119 chr9 2146298 2146508 -115716119 + MER68 LTR ERV1 351 603 -2 3451 200 64 9 chr9 2147470 2148398 -115714229 + L1M3 LINE L1 4509 5485 -698 330 196 0 0 chr9 2149168 2149260 -115713367 + (TGGA)n Simple_repeat Simple_repeat 1 92 0 231 36 0 0 chr9 2149547 2149575 -115713052 + (TG)n Simple_repeat Simple_repeat 2 29 0 2273 93 3 6 chr9 2149638 2149950 -115712677 + AluSp SINE Alu 1 311 -2 574 260 25 51 chr9 2151701 2151897 -115710730 - MIR3 SINE MIR -4 204 14 276 273 52 0 chr9 2153068 2153145 -115709482 + MER5A DNA MER1_type 5 85 -104 232 277 9 9 chr9 2153223 2153335 -115709292 + (CA)n Simple_repeat Simple_repeat 2 113 0 1284 189 0 26 chr9 2153652 2153942 -115708685 + AluJo SINE Alu 25 307 0 246 302 148 16 chr9 2154080 2154269 -115708358 - MIR SINE MIR -26 236 23 423 0 0 0 chr9 2155165 2155212 -115707415 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr9 2156306 2156329 -115706298 + AT_rich Low_complexity Low_complexity 1 23 0 298 274 71 0 chr9 2156983 2157096 -115705531 - Charlie8 DNA MER1_type -2253 164 44 239 298 21 21 chr9 2157352 2157446 -115705181 + MIR3 SINE MIR 113 206 -2 23 33 0 0 chr9 2159769 2159799 -115702828 + AT_rich Low_complexity Low_complexity 1 30 0 282 309 148 27 chr9 2160038 2160187 -115702440 - MIR SINE MIR -49 213 47 988 248 71 65 chr9 2160627 2160950 -115701677 + MER102a DNA MER1_type 1 325 -5 727 262 102 44 chr9 2161433 2161777 -115700850 - MLT1B LTR MaLR -26 364 1 652 260 39 14 chr9 2163626 2163834 -115698793 + MLT1A1 LTR MaLR 153 365 0 252 209 75 0 chr9 2164096 2164163 -115698464 - MLT1J LTR MaLR -341 170 99 27 29 0 0 chr9 2167050 2167084 -115695543 + AT_rich Low_complexity Low_complexity 1 34 0 71 106 0 0 chr9 2167166 2167307 -115695320 + AT_rich Low_complexity Low_complexity 1 141 0 195 311 59 37 chr9 2169148 2169283 -115693344 + MIR3 SINE MIR 30 167 -41 321 111 0 0 chr9 2169691 2169736 -115692891 + AluSg/x SINE Alu 206 250 -52 1208 158 0 21 chr9 2169736 2169958 -115692669 + AluSq SINE Alu 85 303 -10 2018 98 48 0 chr9 2169958 2170253 -115692374 + AluY SINE Alu 1 309 -2 1208 158 0 21 chr9 2170253 2170264 -115692363 + AluSq SINE Alu 303 313 0 388 270 79 101 chr9 2170264 2170631 -115691996 - Charlie7 DNA MER1_type -2253 359 1 370 225 163 31 chr9 2170631 2170760 -115691867 + MIR SINE MIR 89 234 -28 237 33 0 0 chr9 2170939 2170969 -115691658 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 184 280 264 8 chr9 2171161 2171286 -115691341 - L2 LINE L2 -33 3280 3124 2038 125 0 0 chr9 2171717 2172020 -115690607 + AluSx SINE Alu 1 303 -9 353 69 0 17 chr9 2173213 2173271 -115689356 + (TG)n Simple_repeat Simple_repeat 1 57 0 324 348 82 43 chr9 2173559 2173766 -115688861 + L3b LINE CR1 1366 1580 -3 691 239 0 7 chr9 2174378 2174520 -115688107 + MIR SINE MIR 58 198 -64 392 256 23 0 chr9 2175999 2176085 -115686542 + MIR SINE MIR 2 89 -173 2168 169 6 8 chr9 2176401 2176767 -115685860 + MLT1A1 LTR MaLR 1 365 0 678 121 0 0 chr9 2178151 2178267 -115684360 + (CTG)n Simple_repeat Simple_repeat 3 118 0 1176 150 59 24 chr9 2178863 2179117 -115683510 - MER33 DNA MER1_type -32 292 30 884 300 24 10 chr9 2179352 2179645 -115682982 - LTR16C LTR ERVL 0 491 195 475 303 45 11 chr9 2179818 2179996 -115682631 - MIR SINE MIR -59 203 20 2081 99 0 3 chr9 2185280 2185564 -115677063 + AluSx SINE Alu 1 283 -29 261 119 0 0 chr9 2185573 2185615 -115677012 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1823 192 72 43 chr9 2186269 2186357 -115676270 + MLT1C LTR MaLR 1 85 -382 2253 86 3 0 chr9 2186357 2186659 -115675968 - AluSc SINE Alu -6 303 1 1823 192 72 43 chr9 2186659 2187012 -115675615 + MLT1C LTR MaLR 85 455 -12 327 351 73 26 chr9 2187134 2187325 -115675302 + MIR SINE MIR 35 234 -28 278 26 26 0 chr9 2187872 2187911 -115674716 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 1455 191 44 86 chr9 2189869 2190277 -115672350 + MLT2B1 LTR ERVL 1 391 -129 4295 103 2 0 chr9 2243084 2243637 -115618990 - MER41A LTR ERV1 0 554 1 2233 89 0 7 chr9 2244142 2244435 -115618192 + AluSx SINE Alu 3 293 -19 724 183 8 38 chr9 2244443 2244574 -115618053 - FRAM SINE Alu -49 127 1 1080 32 0 0 chr9 2245070 2245194 -115617433 - L1PA4 LINE L1 -3 6152 6029 1042 173 6 0 chr9 2245217 2245385 -115617242 - AluJb SINE Alu -143 169 1 2583 102 8 25 chr9 2245629 2245812 -115616815 - THE1A LTR MaLR 0 355 179 2080 121 13 10 chr9 2245812 2246118 -115616509 + AluSx SINE Alu 1 307 -5 2583 102 8 25 chr9 2246118 2246295 -115616332 - THE1A LTR MaLR -176 179 1 180 245 0 0 chr9 2246584 2246637 -115615990 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 6396 163 53 103 chr9 2247167 2247260 -115615367 + Tigger6b DNA MER2_type 4 100 -1497 2052 184 71 0 chr9 2247260 2247624 -115615003 - MLT1B LTR MaLR 0 390 1 6396 163 53 103 chr9 2247624 2248026 -115614601 + Tigger6b DNA MER2_type 100 521 -1076 2031 141 3 7 chr9 2248026 2248325 -115614302 + AluSx SINE Alu 1 298 -14 6396 163 53 103 chr9 2248325 2248846 -115613781 + Tigger6b DNA MER2_type 521 1067 -530 1830 121 27 40 chr9 2248846 2249143 -115613484 + AluSx SINE Alu 1 293 -19 2094 122 6 28 chr9 2249146 2249465 -115613162 + AluSx SINE Alu 1 312 0 6396 163 53 103 chr9 2249465 2249831 -115612796 + Tigger6b DNA MER2_type 1069 1297 -300 1538 182 18 14 chr9 2249831 2250111 -115612516 + AluJo SINE Alu 1 281 -31 6396 163 53 103 chr9 2250111 2250387 -115612240 + Tigger6b DNA MER2_type 1297 1585 -12 820 264 37 16 chr9 2250588 2250834 -115611793 + MIR SINE MIR 3 253 -9 224 229 0 0 chr9 2250854 2250902 -115611725 + (TAG)n Simple_repeat Simple_repeat 2 49 0 2438 71 0 0 chr9 2251855 2252151 -115610476 - AluSg SINE Alu -8 302 7 342 0 0 0 chr9 2252297 2252335 -115610292 + (T)n Simple_repeat Simple_repeat 1 38 0 1115 156 145 46 chr9 2252946 2252993 -115609634 - L1MB3 LINE L1 0 6183 6142 2305 105 3 6 chr9 2252993 2253307 -115609320 - AluSp SINE Alu 0 313 1 1115 156 145 46 chr9 2253307 2253541 -115609086 - L1MB3 LINE L1 -41 6142 5874 216 0 0 0 chr9 2254737 2254761 -115607866 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr9 2255292 2255314 -115607313 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr9 2256071 2256106 -115606521 + AT_rich Low_complexity Low_complexity 1 35 0 1374 103 5 5 chr9 2259343 2259527 -115603100 - U2 snRNA snRNA -1 187 4 21 0 0 0 chr9 2259656 2259677 -115602950 + AT_rich Low_complexity Low_complexity 1 21 0 294 306 32 16 chr9 2260548 2260672 -115601955 + Charlie8 DNA MER1_type 148 273 -2144 300 206 41 14 chr9 2260725 2260798 -115601829 + Charlie8 DNA MER1_type 2343 2417 0 577 282 4 73 chr9 2260885 2261119 -115601508 + MIR SINE MIR 3 220 -42 1196 311 153 46 chr9 2262434 2263647 -115598980 - L3 LINE CR1 -22 1555 213 190 324 121 44 chr9 2264313 2264495 -115598132 - L2 LINE L2 0 3272 3077 2016 93 76 0 chr9 2264596 2264886 -115597741 - AluSq SINE Alu 0 313 2 331 244 138 50 chr9 2266526 2266686 -115595941 - MIR SINE MIR -20 242 69 271 239 65 43 chr9 2266901 2266993 -115595634 - MIR3 SINE MIR -106 102 9 221 371 124 12 chr9 2269477 2269736 -115592891 - L2 LINE L2 -643 2671 2384 201 308 0 0 chr9 2269742 2269794 -115592833 + (TG)n Simple_repeat Simple_repeat 2 53 0 * 214 194 0 0 chr9 2269759 2269795 -115592832 + (TATG)n Simple_repeat Simple_repeat 3 38 0 550 157 102 0 chr9 2270280 2270388 -115592239 - MER103 DNA DNA -46 120 2 1930 143 3 19 chr9 2271214 2271529 -115591098 + AluJb SINE Alu 1 310 -2 2366 100 0 3 chr9 2272446 2272757 -115589870 - AluSp SINE Alu -3 310 1 189 0 0 0 chr9 2272759 2272780 -115589847 + (T)n Simple_repeat Simple_repeat 1 21 0 1576 159 0 22 chr9 2273159 2273430 -115589197 - AluJb SINE Alu -43 269 5 2414 71 3 0 chr9 2274131 2274428 -115588199 - AluSp SINE Alu -15 298 1 302 290 0 40 chr9 2277700 2277800 -115584827 + L1MC4 LINE L1 6608 6703 -1339 2247 106 10 3 chr9 2279060 2279371 -115583256 - AluSq SINE Alu 0 313 1 2202 92 28 0 chr9 2279383 2279667 -115582960 - AluSx SINE Alu -20 292 1 631 169 36 90 chr9 2280813 2280930 -115581697 - L1MD2 LINE L1 -17 6342 6235 2207 104 7 10 chr9 2280930 2281228 -115581399 - AluSg SINE Alu -13 297 1 631 169 36 90 chr9 2281228 2281276 -115581351 - L1MD2 LINE L1 -124 6235 6186 3001 138 72 23 chr9 2281598 2282154 -115580473 - L1MB2 LINE L1 -2 6169 5587 227 276 0 0 chr9 2282733 2282791 -115579836 + GA-rich Low_complexity Low_complexity 2 59 0 269 346 13 26 chr9 2282865 2283018 -115579609 + MIR SINE MIR 10 160 -102 2062 116 0 80 chr9 2283066 2283402 -115579225 - AluSx SINE Alu -3 309 1 550 217 9 0 chr9 2283535 2283641 -115578986 - MER5A DNA MER1_type -80 109 3 632 209 98 33 chr9 2283691 2283906 -115578721 + MER96B DNA MER1_type? 189 417 0 1703 172 3 21 chr9 2283971 2284262 -115578365 + AluJo SINE Alu 6 291 -21 33 25 0 0 chr9 2284262 2284302 -115578325 + AT_rich Low_complexity Low_complexity 1 40 0 653 190 0 0 chr9 2284373 2284473 -115578154 + AluS SINE Alu 1 100 -213 1903 231 120 33 chr9 2285209 2285785 -115576842 - MLT1E2 LTR MaLR 0 626 1 435 236 47 66 chr9 2286819 2287031 -115575596 + L1MC4a LINE L1 5630 5837 -1971 359 244 34 34 chr9 2287625 2287744 -115574883 + MER94 DNA DNA 1 119 -15 305 258 100 74 chr9 2290488 2290906 -115571721 - L1MC5 LINE L1 0 8042 7611 2281 69 7 36 chr9 2290938 2291244 -115571383 - AluY SINE Alu -14 297 1 198 292 101 11 chr9 2292147 2292236 -115570391 - MIR SINE MIR -62 200 104 1102 168 50 0 chr9 2293452 2293631 -115568996 + MER5A DNA MER1_type 1 188 -1 2062 132 0 3 chr9 2294786 2295075 -115567552 + AluSx SINE Alu 6 293 -19 470 174 55 9 chr9 2295094 2295203 -115567424 - MER110A LTR ERV1 0 468 355 554 182 73 0 chr9 2295296 2295406 -115567221 - MER110A LTR ERV1 -350 118 1 236 304 0 22 chr9 2295453 2295545 -115567082 - L1MC/D LINE L1 -1906 5902 5813 254 174 221 0 chr9 2295575 2295661 -115566966 - L1ME4a LINE L1 -5 6116 6012 4082 209 63 46 chr9 2295782 2295935 -115566692 + L1ME LINE L1 6 155 -6409 1934 168 129 31 chr9 2295935 2296323 -115566304 - MSTA LTR MaLR 0 428 3 8177 153 76 51 chr9 2296326 2297660 -115564967 - MSTA-int LTR MaLR -1 1579 199 2279 110 0 0 chr9 2297660 2297970 -115564657 - AluY SINE Alu 0 311 2 8177 153 76 51 chr9 2297970 2298173 -115564454 - MSTA-int LTR MaLR -1381 199 3 2220 139 150 5 chr9 2298175 2298549 -115564078 - MSTA LTR MaLR 0 428 1 4082 209 63 46 chr9 2298549 2300775 -115561852 + L1ME LINE L1 156 2570 -3994 1819 172 0 10 chr9 2300775 2301077 -115561550 - AluJo SINE Alu -7 305 7 4082 209 63 46 chr9 2301077 2301386 -115561241 + L1ME LINE L1 2570 2872 -3692 1284 201 108 2 chr9 2301427 2301886 -115560741 - L1ME1 LINE L1 -20 6164 5589 1740 216 41 19 chr9 2301890 2302530 -115560097 + L1ME LINE L1 5339 5988 -596 265 254 4 44 chr9 2302522 2302659 -115559968 - L1ME LINE L1 -288 5833 5706 * 2187 132 0 0 chr9 2302736 2303046 -115559581 - AluSx SINE Alu -2 310 1 2190 120 10 0 chr9 2304049 2304349 -115558278 - AluSx SINE Alu -9 303 1 1642 163 20 27 chr9 2304671 2304972 -115557655 - AluJo SINE Alu -13 299 1 440 177 54 39 chr9 2305444 2305574 -115557053 + MER104 DNA Tc2 36 167 -13 522 223 32 38 chr9 2305579 2305736 -115556891 - L1MC4a LINE L1 -1869 5939 5784 816 273 0 6 chr9 2306538 2306721 -115555906 - MIR SINE MIR -69 193 12 182 335 88 59 chr9 2306880 2307119 -115555508 + L2 LINE L2 2583 2828 -486 1291 200 77 0 chr9 2307136 2307436 -115555191 - MER33 DNA MER1_type -1 323 1 1021 181 33 0 chr9 2307446 2307628 -115554999 - MER5A DNA MER1_type -1 188 1 537 330 45 5 chr9 2307636 2307857 -115554770 + Charlie8 DNA MER1_type 1 230 -2187 2545 32 0 23 chr9 2307857 2308166 -115554461 - AluY SINE Alu -8 303 2 709 244 84 121 chr9 2308268 2308673 -115553954 + L2 LINE L2 2883 3272 0 372 222 40 20 chr9 2309563 2309662 -115552965 + MIR3 SINE MIR 108 208 0 643 234 102 24 chr9 2311289 2311494 -115551133 - MIR SINE MIR -32 230 10 1401 152 19 60 chr9 2311843 2312076 -115550551 - Tigger2 DNA MER2_type 0 2718 2496 2223 117 0 0 chr9 2312076 2312376 -115550251 + AluSx SINE Alu 1 300 -12 1401 152 19 60 chr9 2312376 2312411 -115550216 - Tigger2 DNA MER2_type -222 2496 2461 4766 133 32 1 chr9 2312477 2313197 -115549430 - Tigger2 DNA MER2_type -1974 744 3 406 274 41 45 chr9 2313291 2313554 -115549073 + MER57B LTR ERV1 67 322 -80 378 222 0 0 chr9 2313716 2313797 -115548830 + MER57A LTR ERV1 323 403 0 1335 272 60 8 chr9 2313864 2314228 -115548399 - LTR16C LTR ERVL -10 481 99 211 64 21 43 chr9 2315432 2315479 -115547148 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1504 140 42 45 chr9 2316308 2316572 -115546055 - L1PA15 LINE L1 -14 6151 5889 6401 156 29 17 chr9 2316635 2317960 -115544667 - L1MC1 LINE L1 0 6613 5272 8051 31 1 0 chr9 2317973 2319575 -115543052 + L1PA4 LINE L1 4553 6155 0 2845 108 13 5 chr9 2319575 2319972 -115542655 - MSTA LTR MaLR -28 400 1 6168 233 21 38 chr9 2319974 2320849 -115541778 - L1MC1 LINE L1 -2179 4247 3359 1809 133 33 0 chr9 2320849 2321119 -115541508 - AluJb SINE Alu -25 287 9 6168 233 21 38 chr9 2321119 2321270 -115541357 - L1MC1 LINE L1 -3067 3359 3207 2761 23 0 0 chr9 2321270 2321572 -115541055 + AluY SINE Alu 1 302 -9 6168 233 21 38 chr9 2321572 2322715 -115539912 - L1MC1 LINE L1 -3219 3207 2115 22 70 0 0 chr9 2322715 2322758 -115539869 + AT_rich Low_complexity Low_complexity 1 43 0 318 226 263 27 chr9 2322782 2322968 -115539659 - L1ME3A LINE L1 -10 6160 5931 235 281 0 0 chr9 2323235 2323292 -115539335 - L2 LINE L2 -50 3222 3166 644 262 36 6 chr9 2323610 2323778 -115538849 + MIR3 SINE MIR 34 206 -2 271 252 225 0 chr9 2324566 2324677 -115537950 - MIR SINE MIR -70 192 57 1969 155 3 0 chr9 2325522 2325819 -115536808 - AluJb SINE Alu -14 298 1 181 329 73 0 chr9 2327182 2327264 -115535363 + MIR SINE MIR 3 90 -172 256 253 99 11 chr9 2327373 2327464 -115535163 + MIR SINE MIR 162 260 -2 897 304 30 49 chr9 2328049 2328378 -115534249 - MLT1K LTR MaLR -264 324 2 225 374 24 0 chr9 2328382 2328465 -115534162 + MIR SINE MIR 60 144 -118 935 235 11 0 chr9 2328484 2328671 -115533956 - MER5A DNA MER1_type 0 189 1 563 228 55 118 chr9 2329050 2329133 -115533494 + MIR SINE MIR 15 102 -160 2287 87 3 0 chr9 2329133 2329420 -115533207 + AluSp SINE Alu 1 288 -25 191 59 0 29 chr9 2329423 2329457 -115533170 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 563 228 55 118 chr9 2329457 2329623 -115533004 + MIR SINE MIR 104 252 -10 513 252 65 7 chr9 2329787 2329942 -115532685 + MER103 DNA DNA 2 165 -1 1770 152 3 42 chr9 2332391 2332701 -115529926 - AluJo SINE Alu -14 298 1 347 321 22 0 chr9 2332720 2332854 -115529773 - MIR SINE MIR -75 187 51 2034 158 0 0 chr9 2333017 2333327 -115529300 + AluSx SINE Alu 1 310 -2 30 45 0 0 chr9 2333468 2333512 -115529115 + AT_rich Low_complexity Low_complexity 1 44 0 771 130 39 137 chr9 2333850 2334114 -115528513 + MER106B DNA MER1_type 1 1059 0 734 198 23 29 chr9 2334129 2334301 -115528326 - MER5B DNA MER1_type -7 171 1 370 291 158 0 chr9 2334336 2334463 -115528164 - MER117 DNA MER1_type -50 147 1 246 62 0 0 chr9 2335186 2335218 -115527409 + (GA)n Simple_repeat Simple_repeat 1 32 0 1470 250 97 24 chr9 2335239 2335787 -115526840 + L1ME3A LINE L1 5364 5951 -219 2386 84 0 0 chr9 2337222 2337521 -115525106 - AluSx SINE Alu -13 299 1 189 74 0 0 chr9 2339491 2339518 -115523109 + (TG)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr9 2339533 2339557 -115523070 + (GA)n Simple_repeat Simple_repeat 1 24 0 3402 257 85 67 chr9 2340015 2340910 -115521717 + L1MC4a LINE L1 5889 6766 -1042 713 136 18 0 chr9 2340910 2341020 -115521607 - L1MB5 LINE L1 0 6174 6063 3402 257 85 67 chr9 2341020 2341279 -115521348 + L1MC4a LINE L1 6766 7019 -789 1809 188 50 19 chr9 2341279 2341657 -115520970 + MLT1B LTR MaLR 1 390 0 3402 257 85 67 chr9 2341657 2342195 -115520432 + L1MC4a LINE L1 7019 7613 -195 1667 238 100 40 chr9 2342199 2342728 -115519899 + MLT1F1 LTR MaLR 3 567 0 443 198 32 76 chr9 2342760 2342917 -115519710 + L1MC4 LINE L1 7737 7886 -156 200 229 0 16 chr9 2342939 2343000 -115519627 + (TA)n Simple_repeat Simple_repeat 1 60 0 254 295 13 13 chr9 2343000 2343078 -115519549 + GA-rich Low_complexity Low_complexity 2 79 0 233 181 58 69 chr9 2343088 2343194 -115519433 + L1MD3 LINE L1 7922 8018 -21 2235 116 7 0 chr9 2343194 2343496 -115519131 - AluSp SINE Alu -9 304 1 233 181 58 69 chr9 2343496 2343518 -115519109 + L1MD3 LINE L1 8018 8039 0 3051 197 5 17 chr9 2343835 2344424 -115518203 - L1MB7 LINE L1 -9 6175 5594 2256 98 10 0 chr9 2345861 2346158 -115516469 - AluSx SINE Alu -12 300 1 558 317 42 0 chr9 2346849 2347016 -115515611 + L2 LINE L2 2980 3153 -160 1225 151 14 9 chr9 2347025 2347237 -115515390 + AluJo SINE Alu 86 298 -14 400 257 125 56 chr9 2347239 2347358 -115515269 + L2 LINE L2 3158 3290 -23 2332 115 0 0 chr9 2347358 2347662 -115514965 - AluSx SINE Alu -8 304 1 400 257 125 56 chr9 2347662 2347686 -115514941 + L2 LINE L2 3290 3311 -2 194 327 59 30 chr9 2347989 2348090 -115514537 - L2 LINE L2 -244 3069 2966 1745 227 33 85 chr9 2348107 2348675 -115513952 - MER77 LTR ERV1 -4 601 85 1544 241 56 53 chr9 2349078 2349197 -115513430 - MLT1H LTR MaLR -5 544 427 2583 89 60 20 chr9 2349197 2349547 -115513080 + THE1B LTR MaLR 1 364 0 1544 241 56 53 chr9 2349547 2349926 -115512701 - MLT1H LTR MaLR -122 427 1 456 277 117 26 chr9 2351218 2351449 -115511178 - MIR SINE MIR 0 262 11 485 283 40 7 chr9 2351576 2351728 -115510899 - LTR33A LTR ERVL 0 523 367 731 273 157 37 chr9 2352075 2352540 -115510087 - LTR33 LTR ERVL 0 521 1 1597 123 0 0 chr9 2353242 2353462 -115509165 + AluSq SINE Alu 1 220 -93 21 36 0 0 chr9 2353476 2353504 -115509123 + AT_rich Low_complexity Low_complexity 1 28 0 365 241 15 131 chr9 2353792 2353929 -115508698 - MIR3 SINE MIR -3 205 85 268 324 65 36 chr9 2354584 2354723 -115507904 + MIR3 SINE MIR 59 201 -7 403 269 135 55 chr9 2355844 2356127 -115506500 + MLT1I LTR MaLR 85 370 -39 199 333 0 31 chr9 2356299 2356395 -115506232 + L2 LINE L2 2616 2708 -606 186 275 0 0 chr9 2356876 2356945 -115505682 + (TATG)n Simple_repeat Simple_repeat 4 72 0 278 253 20 40 chr9 2358448 2358547 -115504080 - MER113 DNA MER1_type? -115 406 310 373 213 0 13 chr9 2358734 2358809 -115503818 + MIR3 SINE MIR 120 193 -15 368 309 38 51 chr9 2358983 2359139 -115503488 - MIR SINE MIR -69 139 9 652 296 117 34 chr9 2360174 2360803 -115501824 - L1MEd LINE L1 -4455 1855 1107 5945 88 21 3 chr9 2360803 2361569 -115501058 - LTR17 LTR ERV1 0 780 1 652 296 117 34 chr9 2361569 2361776 -115500851 - L1MEd LINE L1 -5203 1107 919 191 341 12 12 chr9 2362859 2362941 -115499686 - L2 LINE L2 0 3313 3232 299 261 9 36 chr9 2363492 2363603 -115499024 + CT-rich Low_complexity Low_complexity 4 111 0 460 186 41 105 chr9 2364165 2364358 -115498269 + MER69A DNA AcHobo 1 177 0 1132 291 78 18 chr9 2364524 2364961 -115497666 + LTR16B LTR ERVL 2 464 0 282 255 97 41 chr9 2365413 2365558 -115497069 - MER103 DNA DNA -3 163 11 773 198 48 39 chr9 2366100 2366307 -115496320 - L2 LINE L2 -1 3312 3104 670 258 32 26 chr9 2367409 2367599 -115495028 - MIR SINE MIR -59 203 13 21 0 0 0 chr9 2368504 2368525 -115494102 + AT_rich Low_complexity Low_complexity 1 21 0 2641 35 0 16 chr9 2368525 2368841 -115493786 - AluY SINE Alu 0 311 1 220 310 0 23 chr9 2369895 2369982 -115492645 + CT-rich Low_complexity Low_complexity 3 87 0 2979 70 123 2 chr9 2372283 2372683 -115489944 + LTR7 LTR ERV1 1 448 -2 378 73 18 0 chr9 2372685 2372740 -115489887 + HERVH LTR ERV1 1 56 -7657 295 258 57 69 chr9 2373240 2373399 -115489228 + MIR SINE MIR 98 254 -8 475 141 0 0 chr9 2373498 2373569 -115489058 - THE1B LTR MaLR 0 375 305 7624 52 2 1 chr9 2373570 2374581 -115488046 + L1PA5 LINE L1 5132 6148 -6 26 0 0 0 chr9 2374815 2374841 -115487786 + AT_rich Low_complexity Low_complexity 1 26 0 2007 112 9 37 chr9 2374841 2375162 -115487465 - THE1B LTR MaLR -49 315 4 4543 183 159 6 chr9 2375343 2376419 -115486208 - MER52A LTR ERV1 -380 1375 46 314 158 0 0 chr9 2377158 2377215 -115485412 - MER52A LTR ERV1 -1697 58 2 578 325 104 21 chr9 2378665 2379139 -115483488 - MLT1K LTR MaLR -4 584 52 3402 190 25 40 chr9 2379580 2380328 -115482299 + L1PA14 LINE L1 5422 6158 -3 1817 183 37 0 chr9 2380389 2380711 -115481916 + L1MB1 LINE L1 5830 6163 -5 210 240 0 20 chr9 2381082 2381132 -115481495 + CT-rich Low_complexity Low_complexity 2 50 0 274 321 102 15 chr9 2381924 2382061 -115480566 + MER5B DNA MER1_type 4 152 -26 218 236 0 14 chr9 2382104 2382176 -115480451 + CT-rich Low_complexity Low_complexity 3 73 0 295 116 0 0 chr9 2382193 2382236 -115480391 - MADE1 DNA Mariner -37 43 1 7817 82 4 1 chr9 2382776 2384550 -115478077 - L1PA7 LINE L1 0 6154 4376 3234 83 30 0 chr9 2384550 2384982 -115477645 + L1PA7 LINE L1 3924 4368 -1778 218 272 25 49 chr9 2385475 2385556 -115477071 - MER5B DNA MER1_type -98 80 2 765 280 20 0 chr9 2385599 2385799 -115476828 - MIR SINE MIR -1 261 58 655 75 0 0 chr9 2385911 2385991 -115476636 + MADE1 DNA Mariner 1 80 0 378 257 6 26 chr9 2386002 2386176 -115476451 + MER63A DNA MER1_type 1 208 -2 1864 141 0 0 chr9 2386499 2386792 -115475835 - AluJb SINE Alu 0 306 14 200 211 0 0 chr9 2387159 2387197 -115475430 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 943 313 40 52 chr9 2387600 2388105 -115474522 - MLT1K LTR MaLR -13 575 77 306 0 0 0 chr9 2388137 2388171 -115474456 + (CA)n Simple_repeat Simple_repeat 2 35 0 184 217 150 0 chr9 2388240 2388300 -115474327 + MIR SINE MIR 194 262 0 479 261 49 35 chr9 2388718 2388860 -115473767 - MIR SINE MIR -111 151 8 225 303 30 0 chr9 2388935 2389001 -115473626 - MIR SINE MIR -9 253 186 951 332 47 3 chr9 2389331 2389714 -115472913 - MLT1I LTR MaLR -7 402 3 419 338 25 25 chr9 2389840 2390000 -115472627 - L2 LINE L2 -3 3269 3110 305 273 39 47 chr9 2390262 2390390 -115472237 - MIR SINE MIR -58 204 78 22 35 0 0 chr9 2392138 2392167 -115470460 + AT_rich Low_complexity Low_complexity 1 29 0 745 158 8 24 chr9 2392170 2392297 -115470330 + AluJo SINE Alu 83 207 -105 267 318 26 3 chr9 2392886 2393041 -115469586 + MIR SINE MIR 49 247 -15 2108 117 3 7 chr9 2393041 2393339 -115469288 - AluSg SINE Alu -13 297 1 326 209 30 0 chr9 2394293 2394360 -115468267 - L3 LINE CR1 -110 1467 1399 589 329 74 21 chr9 2394564 2394984 -115467643 - L1MC4a LINE L1 -1914 5894 5453 1154 350 119 25 chr9 2395085 2396104 -115466523 - L3 LINE CR1 -166 1411 298 228 262 35 64 chr9 2396222 2396363 -115466264 - L1MC4a LINE L1 -1858 5950 5814 228 286 0 0 chr9 2397150 2397206 -115465421 - L3 LINE CR1 -1266 311 256 207 100 0 0 chr9 2397206 2397236 -115465391 + (A)n Simple_repeat Simple_repeat 1 30 0 260 288 32 64 chr9 2397828 2397953 -115464674 + MIR SINE MIR 14 134 -128 260 248 8 34 chr9 2398498 2398615 -115464012 - Charlie7 DNA MER1_type -1 2611 2498 459 0 0 0 chr9 2398651 2398702 -115463925 + (CA)n Simple_repeat Simple_repeat 2 52 0 321 283 9 9 chr9 2398705 2398811 -115463816 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 22 56 0 0 chr9 2399596 2399632 -115462995 + AT_rich Low_complexity Low_complexity 1 36 0 1069 256 62 9 chr9 2399658 2399998 -115462629 - MLT1C LTR MaLR -104 363 6 1408 216 17 11 chr9 2401709 2401996 -115460631 + AluJo SINE Alu 4 292 -20 802 285 111 68 chr9 2401998 2402574 -115460053 + L1ME4a LINE L1 5519 6119 -2 378 280 61 23 chr9 2403513 2403645 -115458982 + MIR3 SINE MIR 50 186 -22 402 236 112 45 chr9 2404305 2404483 -115458144 + MIR SINE MIR 67 256 -6 214 203 188 16 chr9 2405008 2405072 -115457555 + MIR SINE MIR 178 252 -10 274 362 28 28 chr9 2405590 2405767 -115456860 - L2 LINE L2 -38 3275 3099 183 231 96 0 chr9 2406139 2406191 -115456436 + L2 LINE L2 3216 3272 0 402 262 28 19 chr9 2406402 2406509 -115456118 - L2 LINE L2 -1 3312 3205 1815 155 6 43 chr9 2406563 2406886 -115455741 + AluJb SINE Alu 1 311 -1 2390 225 53 47 chr9 2406949 2408170 -115454457 + L1ME1 LINE L1 4724 5967 -199 1264 184 0 0 chr9 2408170 2408376 -115454251 + AluJb SINE Alu 92 297 -15 569 205 29 35 chr9 2408383 2408554 -115454073 + L1ME1 LINE L1 5979 6148 -18 287 322 76 18 chr9 2408663 2408834 -115453793 - L2 LINE L2 -252 3061 2881 202 328 15 0 chr9 2408989 2409056 -115453571 + GA-rich Low_complexity Low_complexity 5 72 0 21 0 0 0 chr9 2410043 2410064 -115452563 + AT_rich Low_complexity Low_complexity 1 21 0 41371 43 3 11 chr9 2410085 2411998 -115450629 + L1PA4 LINE L1 3 1928 -4227 7425 36 4 0 chr9 2411998 2413017 -115449610 - L1PA3 LINE L1 -3 6152 5132 41371 43 3 11 chr9 2413017 2417305 -115445322 + L1PA4 LINE L1 1928 6155 0 453 312 35 70 chr9 2417856 2418225 -115444402 + L2 LINE L2 2917 3272 0 378 282 8 8 chr9 2418357 2418488 -115444139 - MER117 DNA MER1_type -54 143 13 1837 169 118 25 chr9 2418951 2419390 -115443237 + MLT2B1 LTR ERVL 1 480 -40 240 200 0 0 chr9 2419390 2419445 -115443182 + (TA)n Simple_repeat Simple_repeat 1 55 0 286 106 43 0 chr9 2419489 2419536 -115443091 + MLT2C2 LTR ERVL 416 464 0 536 240 60 21 chr9 2419809 2420019 -115442608 - MLT1L LTR MaLR -26 589 266 244 237 17 0 chr9 2420135 2420194 -115442433 - MIR SINE MIR -17 245 186 1480 178 73 0 chr9 2420317 2420592 -115442035 + AluJo SINE Alu 1 295 -17 2450 136 18 0 chr9 2420615 2421006 -115441621 - L1PA16 LINE L1 -9 6157 5760 12801 230 48 7 chr9 2421006 2424886 -115437741 - L1PA16 LINE L1 -645 5521 1485 680 228 64 0 chr9 2424889 2425060 -115437567 - MIR SINE MIR -64 198 17 454 243 29 0 chr9 2425080 2425216 -115437411 - MLT1L LTR MaLR -339 276 137 236 391 6 32 chr9 2425419 2425575 -115437052 + L2 LINE L2 3121 3272 0 252 254 0 0 chr9 2425879 2425934 -115436693 - MER45B DNA AcHobo 0 1040 986 * 1539 295 102 30 chr9 2425929 2426505 -115436122 - MER45C DNA AcHobo -320 633 16 2855 86 10 15 chr9 2426708 2427113 -115435514 + L1PA10 LINE L1 5761 6163 -5 1047 163 59 0 chr9 2427142 2427363 -115435264 + L1MA4 LINE L1 6062 6295 -5 1454 72 88 5 chr9 2427600 2427793 -115434834 - AluSc SINE Alu -16 293 85 344 319 125 7 chr9 2427853 2427997 -115434630 - MER45C DNA AcHobo -353 600 440 508 113 0 0 chr9 2427997 2428068 -115434559 - AluY SINE Alu -228 83 13 528 343 59 9 chr9 2428203 2428422 -115434205 + MIR SINE MIR 2 231 -31 201 147 0 0 chr9 2428815 2428849 -115433778 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 194 260 13 65 chr9 2429446 2429523 -115433104 + MER5A DNA MER1_type 3 75 -114 * 636 197 170 0 chr9 2429468 2429615 -115433012 - MER5A DNA MER1_type -9 180 9 335 260 67 0 chr9 2430013 2430117 -115432510 + MIR SINE MIR 104 214 -48 190 239 43 0 chr9 2430686 2430732 -115431895 - L2 LINE L2 -1 3312 3265 928 288 14 47 chr9 2430733 2431156 -115431471 + MLT1I LTR MaLR 1 409 0 406 276 124 39 chr9 2431179 2431436 -115431191 - L2 LINE L2 -112 3201 2923 1754 298 132 24 chr9 2431459 2432326 -115430301 - L2 LINE L2 -620 2694 1735 267 336 9 0 chr9 2433956 2434066 -115428561 + GA-rich Low_complexity Low_complexity 4 114 0 194 62 31 0 chr9 2436254 2436286 -115426341 + (TG)n Simple_repeat Simple_repeat 1 33 0 204 239 0 22 chr9 2436863 2436909 -115425718 + (CCTA)n Simple_repeat Simple_repeat 2 46 0 285 310 120 6 chr9 2437632 2437790 -115424837 - L2 LINE L2 -917 2397 2222 325 361 87 21 chr9 2437890 2438131 -115424496 - L3 LINE CR1 -48 1529 1273 188 273 23 0 chr9 2438219 2438263 -115424364 + L2 LINE L2 3142 3186 -86 383 314 36 6 chr9 2438322 2438493 -115424134 - MIR SINE MIR -49 213 40 351 323 43 18 chr9 2438965 2439045 -115423582 + MIR SINE MIR 63 140 -122 1598 140 23 57 chr9 2439045 2439345 -115423282 + AluJo SINE Alu 13 302 -10 351 323 43 18 chr9 2439345 2439428 -115423199 + MIR SINE MIR 140 230 -32 1777 100 46 0 chr9 2441981 2442242 -115420385 + L1PA15 LINE L1 5881 6153 -12 2267 87 10 10 chr9 2442242 2442542 -115420085 + AluSc SINE Alu 1 300 -9 180 0 0 0 chr9 2442549 2442569 -115420058 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1724 176 47 29 chr9 2442587 2442995 -115419632 + MLT1C LTR MaLR 51 465 -2 2131 91 0 70 chr9 2443819 2443962 -115418665 + AluSg SINE Alu 1 152 -158 207 0 0 0 chr9 2443962 2443985 -115418642 + (TA)n Simple_repeat Simple_repeat 1 23 0 2131 91 0 70 chr9 2443985 2444170 -115418457 + AluSg SINE Alu 152 306 -4 2654 92 20 8 chr9 2445964 2446357 -115416270 - L1PA13 LINE L1 -2 6161 5764 2495 152 16 28 chr9 2446421 2446854 -115415773 - MSTA LTR MaLR 0 428 1 252 311 67 17 chr9 2447852 2447971 -115414656 + L1ME3A LINE L1 6018 6142 -28 21 0 0 0 chr9 2448253 2448274 -115414353 + AT_rich Low_complexity Low_complexity 1 21 0 257 172 151 0 chr9 2448308 2448401 -115414226 + L1ME LINE L1 5682 5788 -374 180 262 24 0 chr9 2448736 2448778 -115413849 - L3 LINE CR1 -2 1575 1533 29 60 0 0 chr9 2448793 2448843 -115413784 + AT_rich Low_complexity Low_complexity 1 50 0 2287 94 0 3 chr9 2449079 2449376 -115413251 - AluSq SINE Alu -12 301 6 466 350 75 52 chr9 2449448 2449983 -115412644 - L3 LINE CR1 -51 1526 980 342 354 161 32 chr9 2450142 2450614 -115412013 - L3 LINE CR1 -1044 533 1 23 33 0 0 chr9 2450643 2450673 -115411954 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 2450723 2450746 -115411881 + AT_rich Low_complexity Low_complexity 1 23 0 213 163 0 0 chr9 2450774 2450823 -115411804 + (TA)n Simple_repeat Simple_repeat 1 49 0 1739 187 0 13 chr9 2450919 2451219 -115411408 - AluJo SINE Alu -13 299 4 258 56 0 0 chr9 2451444 2451480 -115411147 + (TA)n Simple_repeat Simple_repeat 2 37 0 39 22 0 0 chr9 2451482 2451528 -115411099 + AT_rich Low_complexity Low_complexity 1 46 0 2211 119 3 3 chr9 2451539 2451851 -115410776 - AluSq SINE Alu -1 312 1 200 315 0 0 chr9 2451867 2451921 -115410706 + A-rich Low_complexity Low_complexity 2 55 0 21 82 0 0 chr9 2451927 2451976 -115410651 + AT_rich Low_complexity Low_complexity 1 49 0 1115 242 11 0 chr9 2451993 2452266 -115410361 + Charlie4a DNA MER1_type 201 476 -32 1353 267 144 11 chr9 2453088 2453749 -115408878 + L2 LINE L2 2549 3311 -2 337 174 0 23 chr9 2454286 2454372 -115408255 + CT-rich Low_complexity Low_complexity 2 85 0 1761 162 10 23 chr9 2454372 2454674 -115407953 - AluJo SINE Alu -14 298 1 317 284 30 8 chr9 2454677 2454811 -115407816 + CT-rich Low_complexity Low_complexity 5 141 0 3351 153 23 22 chr9 2455922 2455985 -115406642 - MER7C DNA MER2_type -2426 602 541 2571 58 0 0 chr9 2455985 2456293 -115406334 + AluY SINE Alu 1 308 -3 3351 153 23 22 chr9 2456293 2456830 -115405797 - MER7C DNA MER2_type -2487 541 1 1246 276 53 29 chr9 2457153 2457606 -115405021 + LTR16C LTR ERVL 1 464 -27 1082 270 59 23 chr9 2457633 2458074 -115404553 + ERVL LTR ERVL 685 1141 -3855 689 287 7 6 chr9 2458094 2458381 -115404246 + ERVL LTR ERVL 2565 2912 -2852 1763 349 31 35 chr9 2458410 2459839 -115402788 + ERVL LTR ERVL 3979 4979 -17 762 364 24 12 chr9 2459904 2460330 -115402297 + LTR16B LTR ERVL 34 464 0 786 156 7 22 chr9 2460383 2460518 -115402109 + FLAM_C SINE Alu 1 133 0 5775 53 10 3 chr9 2460638 2461367 -115401260 - L1PA5 LINE L1 -1 6153 5420 2066 108 35 0 chr9 2462512 2462800 -115399827 + AluSx SINE Alu 1 298 -14 509 283 88 0 chr9 2462824 2462983 -115399644 + MER5B DNA MER1_type 4 176 -2 370 294 115 23 chr9 2463320 2463538 -115399089 + MLT1L LTR MaLR 360 597 -18 2134 118 7 3 chr9 2463542 2463847 -115398780 - AluSx SINE Alu -6 306 1 461 264 39 0 chr9 2463916 2464045 -115398582 - MIR SINE MIR -48 214 81 180 247 173 12 chr9 2464816 2464897 -115397730 + MIR SINE MIR 127 220 -42 968 226 102 37 chr9 2465121 2465524 -115397103 + MLT1C LTR MaLR 6 434 -33 191 77 0 0 chr9 2465525 2465551 -115397076 + MIR SINE MIR 120 145 -117 391 288 106 7 chr9 2465627 2465829 -115396798 - MIR SINE MIR 0 262 2 2682 36 0 0 chr9 2466435 2466742 -115395885 + AluY SINE Alu 1 307 -4 252 333 49 24 chr9 2467043 2467166 -115395461 - L2 LINE L2 -443 2871 2746 802 264 60 87 chr9 2467313 2467749 -115394878 - L2 LINE L2 -786 2528 2105 993 260 66 27 chr9 2468178 2468585 -115394042 + L1MC3 LINE L1 5863 6285 -1500 494 284 14 14 chr9 2468601 2468742 -115393885 + L1MD3 LINE L1 7154 7294 -701 1776 133 68 11 chr9 2468742 2469006 -115393621 - AluSx SINE Alu -27 285 7 2992 204 58 133 chr9 2469012 2469936 -115392691 + L1MD3 LINE L1 6291 7212 -596 331 269 65 0 chr9 2469936 2470044 -115392583 + MLT1F1 LTR MaLR 1 115 -452 2992 204 58 133 chr9 2470044 2470278 -115392349 + L1MD3 LINE L1 7212 7462 -346 501 134 47 12 chr9 2470305 2470475 -115392152 + L1MD3 LINE L1 7755 7982 -13 222 37 0 0 chr9 2473486 2473513 -115389114 + (CA)n Simple_repeat Simple_repeat 2 28 0 264 264 103 35 chr9 2473580 2473667 -115388960 - L2 LINE L2 -31 3241 3149 1868 151 13 23 chr9 2474883 2475182 -115387445 - AluJb SINE Alu -16 296 1 192 77 0 0 chr9 2475273 2475299 -115387328 + (T)n Simple_repeat Simple_repeat 1 26 0 593 296 35 6 chr9 2475568 2475737 -115386890 + MIR SINE MIR 48 221 -41 192 284 68 14 chr9 2477808 2477882 -115384745 - MIR SINE MIR 0 262 185 321 272 88 24 chr9 2477981 2478106 -115384521 + MIR SINE MIR 118 250 -12 301 215 89 13 chr9 2480178 2480257 -115382370 - MIR SINE MIR 0 262 178 1698 188 7 16 chr9 2481972 2482280 -115380347 + AluJo SINE Alu 1 305 -7 902 197 53 61 chr9 2482333 2482561 -115380066 + MIR SINE MIR 7 232 -30 22 35 0 0 chr9 2483454 2483483 -115379144 + AT_rich Low_complexity Low_complexity 1 29 0 2277 88 3 0 chr9 2484533 2484828 -115377799 + AluSg SINE Alu 1 296 -14 333 0 0 0 chr9 2486230 2486267 -115376360 + (CCCTAA)n Simple_repeat Simple_repeat 5 41 0 22 0 0 0 chr9 2486390 2486412 -115376215 + AT_rich Low_complexity Low_complexity 1 22 0 262 143 14 100 chr9 2487490 2487630 -115374997 + (TATAA)n Simple_repeat Simple_repeat 1 128 0 24 0 0 0 chr9 2487734 2487758 -115374869 + AT_rich Low_complexity Low_complexity 1 24 0 671 236 94 29 chr9 2487920 2488196 -115374431 - L1M4 LINE L1 -3356 2790 2497 961 289 66 29 chr9 2488286 2488846 -115373781 - L1MC4a LINE L1 -1899 5909 5324 2382 82 0 0 chr9 2488846 2489149 -115373478 - AluY SINE Alu -8 303 1 961 289 66 29 chr9 2489149 2489179 -115373448 - L1MC4a LINE L1 -2484 5324 5297 366 239 77 26 chr9 2489277 2489394 -115373233 + MARNA DNA Mariner 286 408 -178 206 261 31 0 chr9 2489738 2489803 -115372824 + (TATG)n Simple_repeat Simple_repeat 4 70 0 312 298 93 15 chr9 2492724 2492819 -115369808 - L1ME3A LINE L1 -223 5947 5861 843 240 34 5 chr9 2492819 2493027 -115369600 - MER58C DNA MER1_type 0 215 2 312 298 93 15 chr9 2493027 2493136 -115369491 - L1ME3A LINE L1 -309 5861 5727 588 138 62 8 chr9 2493776 2493906 -115368721 - L1MB2 LINE L1 -2 6169 6033 307 339 18 0 chr9 2494692 2494804 -115367823 - MIR SINE MIR -70 192 79 252 0 0 0 chr9 2495571 2495599 -115367028 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2195 118 3 0 chr9 2495800 2496096 -115366531 + AluSx SINE Alu 1 297 -15 243 329 24 0 chr9 2496386 2496468 -115366159 + MIR SINE MIR 179 262 0 216 329 200 0 chr9 2496751 2496891 -115365736 + MIR3 SINE MIR 20 187 -21 229 94 0 0 chr9 2497794 2497826 -115364801 + U6 snRNA snRNA 1 32 -75 188 148 0 0 chr9 2498293 2498320 -115364307 + L2 LINE L2 3263 3289 -24 210 143 0 0 chr9 2498493 2498528 -115364099 - MIR SINE MIR -14 248 214 1155 267 122 13 chr9 2501219 2501597 -115361030 - MLT1G1 LTR MaLR -176 419 1 1847 161 10 22 chr9 2502686 2502997 -115359630 - AluJo SINE Alu -5 307 1 2351 82 0 0 chr9 2503092 2503385 -115359242 - AluY SINE Alu -18 293 1 2200 92 0 0 chr9 2504099 2504381 -115358246 - AluY SINE Alu -29 282 1 319 338 76 6 chr9 2504470 2504627 -115358000 + MIR SINE MIR 40 207 -55 795 202 83 99 chr9 2504773 2505219 -115357408 + LTR37B LTR ERV1 6 444 -24 2061 117 45 48 chr9 2505300 2505676 -115356951 + THE1C LTR MaLR 1 375 0 391 305 22 48 chr9 2506771 2506938 -115355689 + MIR3 SINE MIR 5 177 -31 368 205 68 43 chr9 2506968 2507084 -115355543 + LTR8 LTR ERV1 1 119 -572 260 33 101 0 chr9 2507084 2507128 -115355499 - MLT2A1 LTR ERVL 0 444 402 481 247 0 23 chr9 2507243 2507417 -115355210 + (TATATG)n Simple_repeat Simple_repeat 3 172 0 353 39 19 0 chr9 2507418 2507470 -115355157 - MLT2A1 LTR ERVL -391 53 1 3011 74 0 7 chr9 2507535 2507548 -115355079 - MLT2A1 LTR ERVL -40 404 392 336 102 0 0 chr9 2507548 2507597 -115355030 + (TG)n Simple_repeat Simple_repeat 2 50 0 3011 74 0 7 chr9 2507597 2507990 -115354637 - MLT2A1 LTR ERVL -52 392 1 1853 156 49 138 chr9 2507990 2508649 -115353978 + LTR8A LTR ERV1 128 727 0 643 237 24 6 chr9 2508926 2509095 -115353532 + MER69A DNA AcHobo 3 174 -3 312 332 54 73 chr9 2509333 2509592 -115353035 + MIR SINE MIR 3 256 -6 370 353 62 12 chr9 2509746 2509987 -115352640 + MLT1J LTR MaLR 158 410 -101 840 191 26 0 chr9 2510015 2510167 -115352460 - MER5A DNA MER1_type -30 159 4 296 205 12 12 chr9 2510170 2510253 -115352374 + MLT1J LTR MaLR 416 498 -13 258 188 0 0 chr9 2510349 2510397 -115352230 - L2 LINE L2 -3 3310 3263 787 176 79 0 chr9 2510584 2510749 -115351878 - MER5B DNA MER1_type 0 178 1 187 217 196 33 chr9 2510760 2510852 -115351775 - MIR3 SINE MIR -90 118 12 313 288 136 33 chr9 2511236 2511479 -115351148 - L3 LINE CR1 -2 1575 1308 1333 273 53 68 chr9 2512172 2512851 -115349776 - MER21B LTR ERV1 -171 692 24 867 329 106 20 chr9 2513289 2513782 -115348845 - L3 LINE CR1 -78 1499 965 303 242 65 81 chr9 2514068 2514192 -115348435 + MLT1K LTR MaLR 380 501 -87 809 280 100 11 chr9 2514192 2514571 -115348056 - MER95 LTR ERV 0 431 19 518 290 54 67 chr9 2514579 2514910 -115347717 - MER57-int LTR ERV1 -479 7337 7011 405 190 13 0 chr9 2515115 2515194 -115347433 + Tigger5 DNA MER2_type 1 80 -2243 313 217 43 0 chr9 2515194 2515263 -115347364 - Tigger5 DNA MER2_type -5 2318 2247 272 262 0 36 chr9 2515259 2515343 -115347284 + Tigger5 DNA MER2_type 2243 2323 0 * 297 0 0 0 chr9 2516410 2516443 -115346184 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1484 162 68 54 chr9 2516448 2516726 -115345901 - AluJo SINE Alu -30 282 1 286 313 36 23 chr9 2516970 2517235 -115345392 - MER57-int LTR ERV1 -1390 6147 5018 655 293 34 81 chr9 2517435 2518347 -115344280 - MER57-int LTR ERV1 -1778 5759 2017 2445 138 74 5 chr9 2518685 2519105 -115343522 - LTR47A LTR ERVL 0 452 4 2489 68 3 3 chr9 2520306 2520616 -115342011 - AluY SINE Alu -1 310 1 348 316 13 19 chr9 2520798 2520953 -115341674 - MER57-int LTR ERV1 -5429 1372 1219 5344 143 21 25 chr9 2521246 2522003 -115340624 - L1PA15 LINE L1 -1 6164 5425 1924 149 0 17 chr9 2522003 2522331 -115340296 - AluSg SINE Alu 0 310 1 5344 143 21 25 chr9 2522331 2522739 -115339888 - L1PA15 LINE L1 -740 5425 5017 15252 142 11 26 chr9 2522747 2523992 -115338635 - L1PA10 LINE L1 0 6168 4906 2212 128 0 0 chr9 2523992 2524290 -115338337 + AluSx SINE Alu 1 298 -14 15252 142 11 26 chr9 2524290 2526618 -115336009 - L1PA10 LINE L1 -1262 4906 2645 705 189 0 8 chr9 2526618 2526745 -115335882 - THE1B LTR MaLR 0 364 239 878 314 116 16 chr9 2526776 2527209 -115335418 - L3 LINE CR1 -901 676 201 307 347 5 24 chr9 2528180 2528365 -115334262 + MIR SINE MIR 36 212 -50 1468 179 40 27 chr9 2528984 2529285 -115333342 + AluSx SINE Alu 1 305 -7 3363 144 47 66 chr9 2529499 2530071 -115332556 + LTR8A LTR ERV1 1 557 -170 1715 194 7 13 chr9 2530071 2530381 -115332246 + AluJb SINE Alu 1 308 -4 3363 144 47 66 chr9 2530381 2530549 -115332078 + LTR8A LTR ERV1 557 727 0 1107 228 72 79 chr9 2530853 2531272 -115331355 + L2 LINE L2 2636 3054 -259 1583 219 36 11 chr9 2531272 2531637 -115330990 + MLT1A2 LTR MaLR 1 374 0 1107 228 72 79 chr9 2531637 2531886 -115330741 + L2 LINE L2 3054 3303 -10 350 317 63 55 chr9 2531886 2532052 -115330575 - L1ME LINE L1 -404 5717 5554 1841 179 7 0 chr9 2532052 2532354 -115330273 + AluJb SINE Alu 1 304 -8 350 317 63 55 chr9 2532354 2532644 -115329983 - L1ME LINE L1 -567 5554 5257 447 339 28 24 chr9 2532860 2533108 -115329519 - L1ME LINE L1 -1124 5022 4774 2134 144 0 0 chr9 2533482 2533794 -115328833 - AluSx SINE Alu 0 312 1 1900 188 86 46 chr9 2533983 2534087 -115328540 - LTR49 LTR ERV1 0 595 497 2623 128 36 5 chr9 2534087 2534502 -115328125 + MSTA LTR MaLR 1 428 0 1900 188 86 46 chr9 2534502 2534957 -115327670 - LTR49 LTR ERV1 -98 497 14 2038 127 0 0 chr9 2534957 2535272 -115327355 - AluSx SINE Alu 0 315 1 2007 146 33 0 chr9 2535701 2536003 -115326624 - AluSx SINE Alu 0 312 1 185 41 41 122 chr9 2536330 2536379 -115326248 - MIR3 SINE MIR -32 176 132 2553 191 62 61 chr9 2536408 2537101 -115325526 + LTR8A LTR ERV1 34 727 0 262 236 28 47 chr9 2537140 2537246 -115325381 + L1MC4 LINE L1 7899 8002 -40 1191 171 19 27 chr9 2537389 2537511 -115325116 + MER34B LTR ERV1 1 122 -443 2478 148 130 11 chr9 2537511 2537719 -115324908 + LTR49 LTR ERV1 1 183 -412 249 33 0 0 chr9 2537719 2537749 -115324878 + (CA)n Simple_repeat Simple_repeat 2 31 0 2478 148 130 11 chr9 2537749 2538072 -115324555 + LTR49 LTR ERV1 183 595 0 1191 171 19 27 chr9 2538072 2538206 -115324421 + MER34B LTR ERV1 122 255 -310 2210 151 26 3 chr9 2538208 2538592 -115324035 - MER57A LTR ERV1 -3 400 8 267 91 23 0 chr9 2538593 2538637 -115323990 + MER34B LTR ERV1 251 295 -270 2418 179 33 81 chr9 2538771 2539414 -115323213 - LTR9 LTR ERV1 0 612 1 1557 170 44 11 chr9 2539414 2539684 -115322943 - AluJo SINE Alu -33 279 1 1309 124 21 8 chr9 2540156 2540386 -115322241 + MER34B LTR ERV1 303 535 -30 1257 195 112 57 chr9 2540386 2540825 -115321802 + LTR56 LTR ERV1 1 437 0 1963 188 91 117 chr9 2540972 2541717 -115320910 + LTR8A LTR ERV1 2 727 0 2726 144 43 34 chr9 2542180 2542750 -115319877 - LTR49 LTR ERV1 -17 636 1 * 2825 159 37 12 chr9 2542750 2543260 -115319367 - MER34C LTR ERV1 -24 561 39 2742 100 47 10 chr9 2543349 2543797 -115318830 + LTR56 LTR ERV1 6 437 0 2187 122 0 3 chr9 2543977 2544281 -115318346 - AluSg SINE Alu -7 303 1 848 229 92 42 chr9 2544375 2544615 -115318012 + MLT1B LTR MaLR 3 254 -136 9677 202 15 18 chr9 2544626 2547076 -115315551 - L1P4 LINE L1 -588 5578 3141 901 261 35 0 chr9 2547219 2547476 -115315151 + Charlie5 DNA MER1_type 2 267 -2345 197 65 32 0 chr9 2547477 2547508 -115315119 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 683 176 8 25 chr9 2547511 2547630 -115314997 - AluJb SINE Alu -194 118 2 1245 239 25 28 chr9 2547635 2547804 -115314823 + Charlie5 DNA MER1_type 256 425 -2199 1668 150 221 11 chr9 2547804 2547972 -115314655 - MSTA LTR MaLR 0 428 297 186 43 0 0 chr9 2547972 2547995 -115314632 + (GA)n Simple_repeat Simple_repeat 1 23 0 1668 150 221 11 chr9 2547995 2548179 -115314448 - MSTA LTR MaLR -131 297 2 1245 239 25 28 chr9 2548179 2548336 -115314291 + Charlie5 DNA MER1_type 425 581 -2043 1924 181 111 2 chr9 2548532 2549001 -115313626 + Charlie5 DNA MER1_type 924 1443 -1169 276 222 50 119 chr9 2549244 2549496 -115313131 - LTR37A LTR ERV1 -165 261 26 2449 124 55 6 chr9 2549496 2549843 -115312784 - THE1B LTR MaLR 0 364 1 2673 156 27 9 chr9 2550052 2550502 -115312125 - MER65C LTR ERV1 -2 459 2 2371 86 0 7 chr9 2550949 2551252 -115311375 + AluY SINE Alu 2 302 -9 268 167 21 0 chr9 2551298 2551346 -115311281 + MLT1E2 LTR MaLR 2 50 -604 2104 161 76 55 chr9 2551373 2551691 -115310936 + MER31A LTR ERV1 1 334 -151 2584 39 6 6 chr9 2551691 2552002 -115310625 - AluY SINE Alu 0 311 1 2104 161 76 55 chr9 2552002 2552155 -115310472 + MER31A LTR ERV1 334 482 -3 1569 214 122 57 chr9 2552164 2552640 -115309987 + MLT1E2 LTR MaLR 120 626 0 3836 110 15 19 chr9 2552737 2553263 -115309364 - MER1A DNA MER1_type -3 524 1 274 257 112 62 chr9 2553325 2553504 -115309123 - MIR SINE MIR -15 247 60 2052 175 77 44 chr9 2553560 2554012 -115308615 - MLT1C LTR MaLR 0 467 1 203 365 0 0 chr9 2554520 2554605 -115308022 - MIR SINE MIR -8 254 170 2429 86 0 0 chr9 2554822 2555123 -115307504 - AluSp SINE Alu -12 301 1 537 280 33 22 chr9 2555402 2555584 -115307043 - MIR SINE MIR -51 211 28 1906 249 50 21 chr9 2555693 2556214 -115306413 - MLT1F LTR MaLR 0 542 7 3843 131 24 15 chr9 2556216 2556805 -115305822 + LTR49 LTR ERV1 1 594 -1 267 208 10 146 chr9 2557062 2557158 -115305469 + MIR3 SINE MIR 96 178 -30 3349 130 45 2 chr9 2557239 2557730 -115304897 + MER41E LTR ERV1 1 512 0 211 321 38 38 chr9 2557766 2557897 -115304730 - MIR SINE MIR -58 150 20 232 250 17 0 chr9 2557975 2558035 -115304592 + (CTA)n Simple_repeat Simple_repeat 2 62 0 201 282 97 65 chr9 2558087 2558211 -115304416 - MIR SINE MIR -82 180 53 523 283 19 47 chr9 2558957 2559147 -115303480 - MIR SINE MIR -51 211 27 466 241 62 53 chr9 2559160 2559354 -115303273 - MIR SINE MIR -19 243 49 1461 231 89 100 chr9 2559424 2559723 -115302904 + L2 LINE L2 346 647 -2666 3643 158 82 32 chr9 2559723 2560415 -115302212 + LTR8A LTR ERV1 1 727 0 1461 231 89 100 chr9 2560415 2561194 -115301433 + L2 LINE L2 647 3308 -5 245 106 0 43 chr9 2561499 2561546 -115301081 + (CATA)n Simple_repeat Simple_repeat 1 45 0 243 216 0 54 chr9 2561547 2561597 -115301030 - L1MC4 LINE L1 -1342 6700 6654 1901 152 0 16 chr9 2561597 2561900 -115300727 - AluJo SINE Alu -6 306 9 243 216 0 54 chr9 2561900 2561923 -115300704 - L1MC4 LINE L1 -1388 6654 6631 605 292 11 11 chr9 2562592 2562770 -115299857 + MIR SINE MIR 8 185 -77 631 291 80 37 chr9 2563075 2563425 -115299202 - MLT1I LTR MaLR -38 371 7 268 326 121 7 chr9 2563494 2563635 -115298992 - MIR SINE MIR 0 262 106 1841 142 6 49 chr9 2563640 2563965 -115298662 + AluJb SINE Alu 1 311 -1 361 273 175 0 chr9 2564140 2564283 -115298344 + MER117 DNA MER1_type 4 171 -26 192 298 0 0 chr9 2564299 2564356 -115298271 + MIR SINE MIR 90 146 -62 2302 109 0 6 chr9 2564673 2564984 -115297643 - AluSx SINE Alu 0 312 4 801 302 67 27 chr9 2565125 2565453 -115297174 - LTR33 LTR ERVL -8 513 173 923 215 24 29 chr9 2566267 2566472 -115296155 - MER3 DNA MER1_type 0 209 6 413 294 123 0 chr9 2566636 2566806 -115295821 - MIR SINE MIR 0 262 72 232 234 62 0 chr9 2566810 2566874 -115295753 + MER116 DNA Mariner 11 78 -2 208 174 196 0 chr9 2566876 2566922 -115295705 - MIR SINE MIR -183 79 25 195 256 171 0 chr9 2566965 2567047 -115295580 + MIR SINE MIR 157 252 -10 761 111 151 58 chr9 2567649 2567789 -115294838 + MER53 DNA DNA 1 161 -28 1010 230 56 90 chr9 2567789 2568167 -115294460 + MLT1A1 LTR MaLR 1 365 0 761 111 151 58 chr9 2568167 2568198 -115294429 + MER53 DNA DNA 161 188 -1 753 212 35 6 chr9 2568364 2568534 -115294093 + MER5A DNA MER1_type 4 178 -11 413 306 50 25 chr9 2568544 2568704 -115293923 + MIR SINE MIR 25 188 -74 1042 204 37 28 chr9 2569239 2569455 -115293172 - MER20 DNA MER1_type -1 218 1 1026 203 20 15 chr9 2569565 2569793 -115292834 - AluJo SINE Alu 0 313 85 424 275 67 17 chr9 2569802 2569922 -115292705 - MIR SINE MIR -111 151 26 460 287 28 58 chr9 2571031 2571265 -115291362 + MIR SINE MIR 20 238 -24 221 311 59 42 chr9 2571269 2571388 -115291239 + MIR SINE MIR 106 226 -36 318 311 120 18 chr9 2571678 2571845 -115290782 + MER91B DNA MER1_type 1 184 -6 432 269 168 0 chr9 2572136 2572285 -115290342 + MIR SINE MIR 20 193 -69 22 0 0 0 chr9 2572307 2572329 -115290298 + AT_rich Low_complexity Low_complexity 1 22 0 1591 51 51 0 chr9 2572609 2572806 -115289821 - L1PA4 LINE L1 -2 6153 5947 2064 162 3 26 chr9 2573007 2573352 -115289275 - MER1B DNA MER1_type 0 337 1 327 257 95 19 chr9 2574400 2574505 -115288122 + MARNA DNA Mariner 66 178 -408 499 307 70 23 chr9 2574590 2574805 -115287822 + MARNA DNA Mariner 313 537 -49 423 264 75 87 chr9 2575133 2575688 -115286939 + LTR50 LTR ERVL 1 520 -3 351 221 75 29 chr9 2576928 2577085 -115285542 + MLT1H LTR MaLR 12 177 -334 385 245 47 63 chr9 2577194 2577380 -115285247 + MLT1H LTR MaLR 333 530 -19 125 81 0 0 chr9 2577406 2577736 -115284891 + AT_rich Low_complexity Low_complexity 1 300 0 111 89 0 0 chr9 2577740 2578033 -115284594 + AT_rich Low_complexity Low_complexity 1 293 0 566 277 135 31 chr9 2578177 2578466 -115284161 + L2 LINE L2 2995 3313 0 23 0 0 0 chr9 2579179 2579202 -115283425 + AT_rich Low_complexity Low_complexity 1 23 0 286 244 47 110 chr9 2579680 2579807 -115282820 - MIR3 SINE MIR -53 155 37 461 239 92 8 chr9 2580237 2580367 -115282260 + MIR SINE MIR 14 154 -108 215 326 76 22 chr9 2583263 2583355 -115279272 - L2 LINE L2 -44 3228 3132 819 284 47 0 chr9 2583779 2584015 -115278612 - L1MC/D LINE L1 -2045 5763 5517 496 263 56 15 chr9 2584018 2584264 -115278363 - L1MC/D LINE L1 -748 5398 5220 330 213 118 66 chr9 2584391 2584527 -115278100 - L1MC/D LINE L1 -1156 4990 4848 2085 142 0 16 chr9 2584865 2585175 -115277452 + AluSx SINE Alu 1 305 -7 2288 114 0 0 chr9 2585230 2585529 -115277098 - AluSx SINE Alu -13 299 1 264 299 123 75 chr9 2585767 2585824 -115276803 + L3 LINE CR1 1380 1433 -144 2899 89 5 5 chr9 2585824 2586204 -115276423 - L1PA8 LINE L1 -1 6171 5792 264 299 123 75 chr9 2586204 2586333 -115276294 + L3 LINE CR1 1433 1575 -2 301 211 132 0 chr9 2586678 2586754 -115275873 - MIR SINE MIR -75 187 102 189 74 0 0 chr9 2586785 2586812 -115275815 + (TTA)n Simple_repeat Simple_repeat 2 28 0 202 286 179 9 chr9 2586860 2586972 -115275655 + L2 LINE L2 3151 3281 -32 404 211 0 0 chr9 2586989 2587065 -115275562 + L1MD1 LINE L1 6156 6231 -11 262 177 39 21 chr9 2587255 2587328 -115275299 + MIR SINE MIR 91 169 -39 335 164 0 14 chr9 2587611 2587684 -115274943 + MER3 DNA MER1_type 96 167 -42 31 0 0 0 chr9 2587692 2587723 -115274904 + AT_rich Low_complexity Low_complexity 1 31 0 1549 188 7 24 chr9 2587723 2588015 -115274612 - AluJb SINE Alu -25 287 1 417 104 60 0 chr9 2588015 2588082 -115274545 + MER3 DNA MER1_type 139 209 0 191 319 149 11 chr9 2588962 2589056 -115273571 - MIR3 SINE MIR -47 161 55 395 269 41 58 chr9 2589362 2589533 -115273094 - MIR3 SINE MIR -25 183 16 24 0 0 0 chr9 2590653 2590677 -115271950 + AT_rich Low_complexity Low_complexity 1 24 0 628 284 38 38 chr9 2591082 2591346 -115271281 - MLT1J LTR MaLR -8 503 240 864 233 10 26 chr9 2591347 2591540 -115271087 + AluJo SINE Alu 122 311 -1 310 258 47 74 chr9 2592025 2592215 -115270412 - L1ME4a LINE L1 -2 6119 5935 3042 60 19 0 chr9 2592256 2592624 -115270003 - L1PA8 LINE L1 -7 6165 5791 564 283 30 18 chr9 2592995 2593161 -115269466 + MIR3 SINE MIR 34 201 -7 229 189 75 0 chr9 2593237 2593290 -115269337 + L2 LINE L2 3257 3313 0 322 292 62 59 chr9 2593398 2593546 -115269081 - L1M4 LINE L1 -1630 4516 4370 2028 138 0 10 chr9 2593546 2593844 -115268783 - AluSx SINE Alu -17 295 1 322 292 62 59 chr9 2593844 2594099 -115268528 - L1M4 LINE L1 -1776 4370 4112 869 265 73 83 chr9 2594104 2594631 -115267996 - L1M4 LINE L1 -996 5150 4632 1381 170 134 0 chr9 2594631 2594884 -115267743 - AluSx SINE Alu -25 287 1 869 265 73 83 chr9 2594884 2595138 -115267489 - L1M4 LINE L1 -1514 4632 4377 294 214 0 0 chr9 2595140 2595196 -115267431 + MLT1F1 LTR MaLR 3 58 -509 867 248 63 38 chr9 2595237 2595475 -115267152 + MLT1F1 LTR MaLR 50 293 -274 366 315 81 35 chr9 2595553 2595959 -115266668 - L1M4 LINE L1 -1757 4389 3965 411 21 0 0 chr9 2595973 2596021 -115266606 + (CA)n Simple_repeat Simple_repeat 2 49 0 308 313 15 37 chr9 2596029 2596192 -115266435 - L1ME4a LINE L1 -487 5634 5495 974 243 21 0 chr9 2596228 2596463 -115266164 - MIR SINE MIR 0 262 23 1438 195 47 0 chr9 2596465 2596742 -115265885 - AluJo SINE Alu -14 298 9 191 269 247 0 chr9 2596807 2596900 -115265727 - MIR SINE MIR -4 258 143 994 167 6 36 chr9 2597118 2597286 -115265341 - FRAM SINE Alu -3 163 1 500 307 98 19 chr9 2597348 2597563 -115265064 + MIR SINE MIR 20 251 -11 765 268 9 28 chr9 2597738 2597951 -115264676 - MIR SINE MIR -25 237 29 640 280 69 0 chr9 2598199 2598417 -115264210 + MIR SINE MIR 29 261 -1 258 244 144 11 chr9 2598983 2599073 -115263554 - MER5B DNA MER1_type -51 127 26 1047 171 15 20 chr9 2599753 2599952 -115262675 - AluJo SINE Alu -21 291 94 313 221 158 11 chr9 2599991 2600086 -115262541 + MIR3 SINE MIR 47 155 -53 255 297 30 20 chr9 2600890 2600991 -115261636 - MIR SINE MIR -50 212 111 34 0 0 0 chr9 2601180 2601214 -115261413 + AT_rich Low_complexity Low_complexity 1 34 0 1705 181 7 19 chr9 2601247 2601557 -115261070 - AluJo SINE Alu -6 306 1 200 244 22 0 chr9 2601565 2601610 -115261017 - MER5A DNA MER1_type -79 110 65 611 111 202 0 chr9 2602155 2602254 -115260373 + AluJb SINE Alu 182 300 -12 243 225 56 28 chr9 2602260 2602331 -115260296 + MER5A DNA MER1_type 117 189 0 1384 160 36 4 chr9 2603525 2603750 -115258877 - MER46A DNA MER2_type 0 236 5 321 276 43 9 chr9 2603956 2604072 -115258555 - MIR SINE MIR -48 214 95 800 219 48 28 chr9 2604095 2604169 -115258458 - L1MB4 LINE L1 -23 6157 6086 1487 122 5 0 chr9 2604169 2604374 -115258253 + AluSx SINE Alu 1 206 -106 800 219 48 28 chr9 2604374 2604586 -115258041 - L1MB4 LINE L1 -94 6086 5950 2701 23 0 0 chr9 2604896 2605195 -115257432 + AluY SINE Alu 3 301 -10 1858 130 38 17 chr9 2605293 2605585 -115257042 - AluJb SINE Alu -14 298 1 327 49 0 0 chr9 2605617 2605658 -115256969 + (CA)n Simple_repeat Simple_repeat 2 42 0 308 267 10 20 chr9 2606139 2606240 -115256387 + MIR SINE MIR 150 249 -13 370 237 51 70 chr9 2606331 2606361 -115256266 - MIR SINE MIR -102 160 131 333 0 0 0 chr9 2606361 2606398 -115256229 + (TG)n Simple_repeat Simple_repeat 2 38 0 370 237 51 70 chr9 2606398 2606523 -115256104 - MIR SINE MIR -131 131 8 2143 132 0 0 chr9 2607076 2607371 -115255256 + AluSx SINE Alu 1 295 -17 2381 164 10 10 chr9 2608984 2609373 -115253254 + MLT1B LTR MaLR 1 389 -1 2219 125 3 0 chr9 2610440 2610744 -115251883 + AluSp SINE Alu 1 305 -8 1753 246 87 24 chr9 2610769 2611310 -115251317 - MER90 LTR ERV1 0 575 1 213 167 42 0 chr9 2612327 2612375 -115250252 + CT-rich Low_complexity Low_complexity 3 52 0 180 77 0 0 chr9 2612620 2612646 -115249981 + (T)n Simple_repeat Simple_repeat 1 26 0 2086 121 20 0 chr9 2613647 2613945 -115248682 + AluSx SINE Alu 1 304 -8 327 203 0 0 chr9 2613945 2614014 -115248613 + (TA)n Simple_repeat Simple_repeat 1 69 0 276 30 0 0 chr9 2614014 2614047 -115248580 + (CA)n Simple_repeat Simple_repeat 2 34 0 492 260 0 0 chr9 2614155 2614255 -115248372 - MER58B DNA MER1_type 0 341 242 472 153 0 14 chr9 2614301 2614373 -115248254 + AluSg/x SINE Alu 86 156 -154 532 160 180 82 chr9 2614384 2614578 -115248049 - MER58B DNA MER1_type -128 213 1 315 313 53 33 chr9 2614611 2614761 -115247866 - L1MC4a LINE L1 -1845 5963 5811 915 197 0 38 chr9 2614833 2615016 -115247611 - AluJb SINE Alu -3 309 134 1969 130 3 10 chr9 2615016 2615317 -115247310 - AluSx SINE Alu -13 299 1 274 351 0 0 chr9 2615319 2615433 -115247194 - L1MC4a LINE L1 -379 5742 5629 336 278 41 0 chr9 2616089 2616186 -115246441 + MIR3 SINE MIR 96 196 -12 238 292 29 109 chr9 2616210 2616297 -115246330 + L2 LINE L2 3146 3220 -52 1638 169 14 27 chr9 2616297 2616592 -115246035 + AluJo SINE Alu 1 291 -21 238 292 29 109 chr9 2616592 2616641 -115245986 + L2 LINE L2 3220 3271 -1 722 285 94 84 chr9 2616690 2617273 -115245354 + MLT1L LTR MaLR 19 607 -8 2388 83 0 0 chr9 2618242 2618544 -115244083 + AluY SINE Alu 1 302 -9 302 291 127 63 chr9 2619011 2619169 -115243458 + MIR SINE MIR 20 187 -75 563 323 96 27 chr9 2619194 2619274 -115243353 - L2 LINE L2 0 3272 3199 1973 159 0 3 chr9 2619274 2619576 -115243051 + AluSx SINE Alu 1 301 -11 563 323 96 27 chr9 2619576 2619901 -115242726 - L2 LINE L2 -73 3199 2839 2446 89 0 0 chr9 2619923 2620225 -115242402 + AluSc SINE Alu 1 302 -7 183 330 8 93 chr9 2620237 2620355 -115242272 - MIR SINE MIR -126 136 29 298 263 61 35 chr9 2622382 2622496 -115240131 + L2 LINE L2 3197 3313 0 2697 145 20 57 chr9 2622713 2623258 -115239369 + L1MB4 LINE L1 5655 6179 -1 506 338 32 18 chr9 2623350 2623569 -115239058 + MIR SINE MIR 29 250 -12 2815 110 0 3 chr9 2623685 2624050 -115238577 - THE1B LTR MaLR 0 364 1 503 231 59 117 chr9 2624391 2624863 -115237764 - HAL1 LINE L1 -32 2475 2031 2313 250 80 57 chr9 2624868 2625982 -115236645 - HAL1 LINE L1 -838 1669 530 313 298 43 27 chr9 2626132 2626320 -115236307 + L1ME4a LINE L1 5725 5915 -206 2267 108 3 0 chr9 2626766 2627063 -115235564 - AluY SINE Alu -13 298 1 509 317 54 32 chr9 2627071 2627443 -115235184 - L1M4 LINE L1 -2055 4091 3712 3797 152 17 2 chr9 2627545 2628124 -115234503 - L1PA15 LINE L1 0 6165 5578 977 233 49 0 chr9 2628152 2628397 -115234230 + L1M4 LINE L1 2476 2732 -3414 3224 245 33 16 chr9 2628400 2629319 -115233308 - L1M4 LINE L1 -1694 4452 3519 2211 107 3 7 chr9 2629834 2630134 -115232493 + AluSg SINE Alu 1 299 -11 437 341 29 39 chr9 2630815 2631020 -115231607 - MIR SINE MIR -58 204 2 2312 109 69 29 chr9 2631991 2632341 -115230286 - THE1B LTR MaLR 0 364 1 11275 102 2 81 chr9 2632341 2634055 -115228572 - THE1B-int LTR MaLR 0 1580 1 2380 125 43 14 chr9 2634057 2634409 -115228218 - THE1B LTR MaLR -2 362 1 375 247 58 39 chr9 2634998 2635152 -115227475 - L2 LINE L2 -202 3070 2914 221 114 45 0 chr9 2636623 2636667 -115225960 + T-rich Low_complexity Low_complexity 2 47 0 207 265 20 0 chr9 2636836 2636885 -115225742 + L3 LINE CR1 1526 1575 -2 905 289 141 18 chr9 2637497 2638167 -115224460 + L2 LINE L2 2563 3308 -5 180 0 0 0 chr9 2639070 2639090 -115223537 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 187 297 164 16 chr9 2639127 2639255 -115223372 - MIR SINE MIR -50 212 66 236 273 141 41 chr9 2640838 2640959 -115221668 + MIR SINE MIR 112 244 -18 289 289 193 15 chr9 2641324 2641459 -115221168 - MIR SINE MIR -22 240 82 252 0 0 0 chr9 2643074 2643102 -115219525 + (T)n Simple_repeat Simple_repeat 1 28 0 1027 84 30 0 chr9 2643602 2643733 -115218894 - AluJb SINE Alu -177 135 1 869 192 34 0 chr9 2644899 2645076 -115217551 - MER5A DNA MER1_type 0 189 7 1636 166 42 93 chr9 2650202 2650367 -115212260 + MLT1B LTR MaLR 1 173 -217 2155 117 0 0 chr9 2650367 2650658 -115211969 + AluSx SINE Alu 15 305 -7 1636 166 42 93 chr9 2650658 2650901 -115211726 + MLT1B LTR MaLR 173 388 -2 2498 65 6 37 chr9 2655576 2655899 -115206728 + AluSq SINE Alu 1 313 0 1654 188 36 36 chr9 2660591 2660952 -115201675 + MLT1A1 LTR MaLR 1 361 -4 522 221 44 0 chr9 2661301 2661414 -115201213 + MER94 DNA DNA 1 118 -16 189 0 0 0 chr9 2662055 2662076 -115200551 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2484 71 0 7 chr9 2662076 2662385 -115200242 - AluY SINE Alu -4 307 1 751 304 24 0 chr9 2664761 2664968 -115197659 + MLT1J LTR MaLR 70 281 -230 333 0 0 0 chr9 2666956 2666993 -115195634 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr9 2666992 2667013 -115195614 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 4557 157 29 8 chr9 2668183 2669296 -115193331 - L1MA4A LINE L1 -6 6150 5062 2135 133 10 0 chr9 2669951 2670260 -115192367 + AluSq SINE Alu 1 312 -1 468 272 108 15 chr9 2670423 2670618 -115192009 - MIR SINE MIR -35 227 15 725 181 29 103 chr9 2670824 2671028 -115191599 - MER5A DNA MER1_type 0 189 1 2327 87 0 7 chr9 2672162 2672462 -115190165 - AluSg SINE Alu -12 298 1 244 294 151 8 chr9 2672921 2673047 -115189580 + L2 LINE L2 3122 3265 -7 2106 137 61 9 chr9 2673595 2673938 -115188689 + MER46B DNA MER2_type 1 236 0 181 355 16 0 chr9 2675015 2675077 -115187550 - L3 LINE CR1 -1460 117 55 225 0 0 0 chr9 2677867 2677892 -115184735 + (CCG)n Simple_repeat Simple_repeat 1 25 0 307 286 24 0 chr9 2677929 2678013 -115184614 + G-rich Low_complexity Low_complexity 2 87 0 205 122 0 41 chr9 2678125 2678174 -115184453 + (GGGGA)n Simple_repeat Simple_repeat 5 51 0 23 33 0 0 chr9 2678293 2678323 -115184304 + GC_rich Low_complexity Low_complexity 1 30 0 227 366 24 0 chr9 2680288 2680370 -115182257 + MIR SINE MIR 65 148 -60 186 338 13 0 chr9 2680681 2680758 -115181869 - L2 LINE L2 0 3272 3195 715 265 45 9 chr9 2680972 2681195 -115181432 + MLT1I LTR MaLR 39 269 -140 781 255 82 0 chr9 2681269 2681453 -115181174 + MER58C DNA MER1_type 2 200 -15 347 193 121 12 chr9 2681494 2681577 -115181050 + MLT1I LTR MaLR 318 409 0 1625 161 23 33 chr9 2681961 2682266 -115180361 + AluJb SINE Alu 1 302 -10 313 328 5 7 chr9 2682404 2682538 -115180089 - MER5A DNA MER1_type -43 146 1 1059 159 74 0 chr9 2682964 2683140 -115179487 - MER5A DNA MER1_type 0 189 1 444 332 89 43 chr9 2683192 2683584 -115179043 + MLT1K LTR MaLR 162 571 -17 852 232 32 41 chr9 2683953 2684173 -115178454 + MER20B DNA MER1_type 2 219 0 777 249 92 9 chr9 2685391 2685608 -115177019 + MIR SINE MIR 2 236 -26 518 247 45 32 chr9 2685676 2685830 -115176797 + MER5B DNA MER1_type 3 158 -20 2422 97 3 0 chr9 2686689 2686999 -115175628 + AluSx SINE Alu 1 311 -1 5020 139 19 1 chr9 2687885 2688683 -115173944 + L1MA4A LINE L1 5486 6297 -6 1422 161 24 69 chr9 2689939 2690274 -115172353 - L1MA7 LINE L1 -2 6289 5970 2231 93 0 42 chr9 2690279 2690591 -115172036 - AluSx SINE Alu -13 299 1 331 303 8 8 chr9 2692514 2692633 -115169994 + MIR SINE MIR 32 150 -112 1526 233 81 40 chr9 2693216 2693748 -115168879 - MER20B DNA MER1_type -1 782 229 1291 172 19 34 chr9 2693802 2694070 -115168557 - AluJo SINE Alu -7 305 42 417 225 78 56 chr9 2694074 2694216 -115168411 - MER20B DNA MER1_type -608 175 31 406 294 73 14 chr9 2694607 2694737 -115167890 + MIR SINE MIR 18 168 -94 1466 213 96 0 chr9 2694737 2695070 -115167557 - MLT1A1 LTR MaLR 0 365 1 406 294 73 14 chr9 2695070 2695157 -115167470 + MIR SINE MIR 168 248 -14 4764 106 1 7 chr9 2695219 2695891 -115166736 - L1PA13 LINE L1 -13 6150 5483 4719 107 1 0 chr9 2695230 2695906 -115166721 - L1PA13 LINE L1 -19 6144 5468 354 295 18 18 chr9 2697388 2697500 -115165127 - L1ME4a LINE L1 -48 6073 5962 789 193 0 0 chr9 2697541 2697681 -115164946 + FRAM SINE Alu 1 140 -36 2187 106 0 3 chr9 2698314 2698606 -115164021 - AluSx SINE Alu -21 291 1 190 154 51 0 chr9 2698775 2698814 -115163813 + L2 LINE L2 184 224 -3090 300 234 0 64 chr9 2700013 2700107 -115162520 + CT-rich Low_complexity Low_complexity 1 88 0 306 125 0 0 chr9 2701244 2701292 -115161335 + (TCC)n Simple_repeat Simple_repeat 1 48 0 1951 173 3 0 chr9 2701292 2701598 -115161029 - AluJb SINE Alu -5 307 1 322 274 121 40 chr9 2702273 2702435 -115160192 + MIR SINE MIR 16 179 -56 223 312 184 32 chr9 2702544 2702762 -115159865 + MIR SINE MIR 11 261 -1 28 0 0 0 chr9 2704293 2704321 -115158306 + AT_rich Low_complexity Low_complexity 1 28 0 457 235 176 15 chr9 2704539 2704743 -115157884 - L1ME4a LINE L1 -4 6117 5881 338 332 161 10 chr9 2704889 2705058 -115157569 - L1ME4a LINE L1 -452 5669 5466 437 253 11 79 chr9 2705058 2705248 -115157379 + MER5B DNA MER1_type 1 177 -1 338 332 161 10 chr9 2705248 2705271 -115157356 - L1ME4a LINE L1 -655 5466 5448 352 311 78 38 chr9 2706092 2706462 -115156165 + MLT1J LTR MaLR 108 492 -19 1873 169 28 104 chr9 2706706 2707169 -115155458 + MSTB1 LTR MaLR 1 428 -4 8865 173 40 7 chr9 2707173 2708771 -115153856 + MSTB-int LTR MaLR 1 1651 0 2104 188 39 12 chr9 2708771 2709186 -115153441 + MSTB LTR MaLR 1 426 0 2078 151 5 16 chr9 2710374 2710746 -115151881 - L1PB1 LINE L1 -2 6149 5782 424 174 23 0 chr9 2710746 2710832 -115151795 + L1PB1 LINE L1 5777 5864 -287 278 137 0 0 chr9 2710847 2710898 -115151729 - L1PB1 LINE L1 -597 5554 5504 300 289 0 22 chr9 2710922 2711012 -115151615 + L1MC4 LINE L1 6616 6703 -1339 13905 195 27 7 chr9 2711017 2713642 -115148985 - L1P5 LINE L1 -360 6507 3936 207 0 0 0 chr9 2713642 2713665 -115148962 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13905 195 27 7 chr9 2713665 2716633 -115145994 - L1P5 LINE L1 -2931 3936 653 402 21 0 0 chr9 2717204 2717251 -115145376 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 295 250 156 19 chr9 2718493 2718653 -115143974 - L1ME3A LINE L1 0 6170 5989 2869 80 22 59 chr9 2718757 2719218 -115143409 - MLT2A1 LTR ERVL 0 444 1 290 271 35 80 chr9 2719225 2719686 -115142941 - L1MEc LINE L1 -4917 1393 954 2411 69 0 0 chr9 2719714 2720020 -115142607 - AluY SINE Alu -5 306 1 292 184 51 20 chr9 2720301 2720399 -115142228 - L1MC5 LINE L1 -30 7931 7831 389 351 121 4 chr9 2720411 2720659 -115141968 - L1MEc LINE L1 -5292 827 551 762 282 194 5 chr9 2721240 2721652 -115140975 + LTR33A LTR ERVL 5 494 -29 429 301 21 43 chr9 2722717 2722903 -115139724 + MIR SINE MIR 11 192 -70 1456 204 29 50 chr9 2724282 2724664 -115137963 - MLT1A2 LTR MaLR 0 374 1 635 178 0 75 chr9 2724746 2724892 -115137735 - AluJo/FRAM SINE Alu -3 309 175 317 183 56 14 chr9 2724892 2724963 -115137664 - Alu SINE Alu -251 52 2 507 279 161 43 chr9 2725419 2725766 -115136861 + L2 LINE L2 2924 3311 -2 224 266 164 31 chr9 2725778 2725906 -115136721 - MIR SINE MIR -66 196 52 2242 120 0 7 chr9 2726172 2726471 -115136156 - AluSx SINE Alu -15 297 1 2094 131 108 10 chr9 2727454 2727842 -115134785 + MSTB LTR MaLR 1 426 0 1879 199 14 0 chr9 2728103 2728474 -115134153 + MLT1B LTR MaLR 15 390 0 264 276 0 0 chr9 2728673 2728731 -115133896 - L2 LINE L2 -2 3270 3213 381 22 0 0 chr9 2729499 2729545 -115133082 - MLT2C1 LTR ERVL 0 520 475 1125 128 0 0 chr9 2729546 2729726 -115132901 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 258 0 43 chr9 2729736 2729922 -115132705 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 405 0 0 0 chr9 2729923 2729968 -115132659 + (TG)n Simple_repeat Simple_repeat 1 45 0 1665 193 15 9 chr9 2730006 2730343 -115132284 - MLT2C1 LTR ERVL -58 339 1 405 309 11 56 chr9 2730435 2730613 -115132014 - L3 LINE CR1 -112 1465 1296 229 135 0 0 chr9 2730713 2730750 -115131877 - MER103 DNA DNA -1 165 129 939 249 111 47 chr9 2730938 2731343 -115131284 - MLT1H LTR MaLR 0 549 119 242 313 117 31 chr9 2731453 2731616 -115131011 - MER5B DNA MER1_type -1 177 1 1677 165 47 52 chr9 2732329 2732711 -115129916 - MLT1B LTR MaLR -10 380 1 854 236 64 40 chr9 2733244 2733276 -115129351 + MIR SINE MIR 7 37 -225 1107 202 52 0 chr9 2733276 2733489 -115129138 + MER58A DNA MER1_type 1 224 0 854 236 64 40 chr9 2733489 2733706 -115128921 + MIR SINE MIR 37 262 0 1764 167 20 0 chr9 2734600 2734893 -115127734 + AluJo SINE Alu 1 299 -13 3038 81 26 2 chr9 2735074 2735495 -115127132 + MLT2A2 LTR ERVL 23 453 0 5250 141 47 1 chr9 2735539 2736504 -115126123 - L1MC1 LINE L1 -1 6612 5604 2240 105 10 0 chr9 2736504 2736800 -115125827 - AluSp SINE Alu -14 299 1 4288 111 28 7 chr9 2736818 2737505 -115125122 - L1MA3 LINE L1 0 6305 5605 210 71 0 0 chr9 2737505 2737533 -115125094 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 998 148 0 0 chr9 2737534 2737696 -115124931 - L1PA15 LINE L1 -31 6134 5973 19445 134 29 10 chr9 2737705 2740933 -115121694 - L1M1 LINE L1 -4262 3303 14 1309 229 61 11 chr9 2740938 2741298 -115121329 - L1MC1 LINE L1 -823 5603 5216 201 39 0 0 chr9 2741298 2741324 -115121303 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1309 229 61 11 chr9 2741324 2741403 -115121224 - L1MC1 LINE L1 -1210 5216 5142 * 1603 267 6 0 chr9 2741402 2741892 -115120735 - L1MC1 LINE L1 -3420 3006 2514 2521 179 53 2 chr9 2741892 2742477 -115120150 + L1PBa LINE L1 1758 2372 -4491 5964 92 14 22 chr9 2742477 2743398 -115119229 - L1PA12 LINE L1 -4 6164 5236 4272 76 43 3 chr9 2743398 2743980 -115118647 + LTR14B LTR ERVK 4 608 0 5964 92 14 22 chr9 2743980 2744589 -115118038 - L1PA12 LINE L1 -932 5236 4638 2200 132 0 0 chr9 2744589 2744885 -115117742 + AluSx SINE Alu 1 296 -16 5964 92 14 22 chr9 2744885 2745137 -115117490 - L1PA12 LINE L1 -1530 4638 4385 559 239 22 0 chr9 2745138 2745272 -115117355 - L1MC1 LINE L1 -6284 142 6 447 246 44 11 chr9 2745699 2745882 -115116745 - L1ME4a LINE L1 -2 6119 5931 378 323 62 0 chr9 2745906 2746067 -115116560 - MIR SINE MIR -2 260 90 21 71 0 0 chr9 2746128 2746170 -115116457 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 2746247 2746268 -115116359 + AT_rich Low_complexity Low_complexity 1 21 0 2447 63 0 3 chr9 2746914 2747215 -115115412 - AluY SINE Alu -11 300 1 338 216 129 52 chr9 2747482 2747598 -115115029 - MIR3 SINE MIR -6 202 78 1565 268 26 35 chr9 2747830 2748400 -115114227 - L1MD3 LINE L1 -18 7977 7413 476 202 0 23 chr9 2748402 2748531 -115114096 + L1MD3 LINE L1 6938 7063 -932 3145 207 32 2 chr9 2748538 2749165 -115113462 + MER82 DNA MER2_type 8 653 0 725 214 61 31 chr9 2749170 2749399 -115113228 + L1MC4a LINE L1 7015 7250 -558 24 0 0 0 chr9 2749532 2749556 -115113071 + AT_rich Low_complexity Low_complexity 1 24 0 333 282 137 8 chr9 2749765 2749896 -115112731 + L2 LINE L2 3122 3269 -3 813 262 187 18 chr9 2750323 2750708 -115111919 - MLT1J2 LTR MaLR 0 450 1 226 301 70 24 chr9 2751401 2751614 -115111013 - L1ME4a LINE L1 -4 6117 5895 599 208 214 0 chr9 2751834 2752002 -115110625 + MIR SINE MIR 58 261 -1 952 173 9 61 chr9 2752056 2752287 -115110340 + MER20 DNA MER1_type 1 219 0 706 216 29 39 chr9 2752515 2752723 -115109904 - MER106A DNA MER1_type -2 234 29 205 347 95 11 chr9 2753684 2753779 -115108848 + L2 LINE L2 3161 3263 -9 1554 201 7 26 chr9 2754967 2755270 -115107357 - AluJb SINE Alu -15 297 1 464 295 70 8 chr9 2755490 2755619 -115107008 + L2 LINE L2 3136 3272 0 5846 83 30 52 chr9 2756214 2757827 -115104800 + L1PA10 LINE L1 4558 6152 -16 2242 117 0 13 chr9 2758494 2758811 -115103816 + AluSq SINE Alu 1 313 0 22 0 0 0 chr9 2759571 2759593 -115103034 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 2760439 2760460 -115102167 + (T)n Simple_repeat Simple_repeat 1 21 0 29 0 0 0 chr9 2761076 2761105 -115101522 + AT_rich Low_complexity Low_complexity 1 29 0 215 274 0 0 chr9 2761382 2761433 -115101194 + G-rich Low_complexity Low_complexity 6 56 0 340 263 53 45 chr9 2762329 2762462 -115100165 - MIR SINE MIR -18 244 111 580 261 141 5 chr9 2763299 2763498 -115099129 + MIR SINE MIR 29 254 -8 823 243 79 69 chr9 2765007 2765414 -115097213 + HsTC2a DNA Tc2 94 504 -240 455 156 22 11 chr9 2765415 2765505 -115097122 + HsTC2a DNA Tc2 651 741 -1 250 292 83 0 chr9 2766121 2766241 -115096386 - L3b LINE CR1 -351 1232 1103 258 225 56 11 chr9 2766253 2766342 -115096285 - MER94 DNA DNA -9 125 33 863 274 155 44 chr9 2766380 2766792 -115095835 - L3 LINE CR1 -492 1085 615 2203 92 0 3 chr9 2766792 2767114 -115095513 + AluSg SINE Alu 1 321 0 863 274 155 44 chr9 2767114 2767157 -115095470 - L3 LINE CR1 -962 615 578 1144 199 85 99 chr9 2767159 2767652 -115094975 - LTR29 LTR ERV1 0 622 137 276 283 23 48 chr9 2767627 2767774 -115094853 - MER34 LTR ERV1 -409 133 1 * 182 329 25 63 chr9 2767795 2767953 -115094674 - L3 LINE CR1 -1055 522 371 180 143 0 122 chr9 2768034 2768083 -115094544 + L2 LINE L2 3261 3303 -10 2182 111 20 3 chr9 2769251 2769549 -115093078 + AluSx SINE Alu 1 303 -9 603 293 102 5 chr9 2769554 2769759 -115092868 + MIR SINE MIR 28 252 -10 547 281 207 5 chr9 2769956 2770159 -115092468 + MIR SINE MIR 2 245 -17 396 312 28 7 chr9 2770422 2770563 -115092064 - MER117 DNA MER1_type -53 144 1 2234 116 0 13 chr9 2770659 2770970 -115091657 - AluSx SINE Alu -5 307 1 1958 130 14 0 chr9 2771360 2771645 -115090982 - AluSq SINE Alu -7 306 18 574 298 36 16 chr9 2771796 2772105 -115090522 + L1ME LINE L1 5316 5558 -604 2636 82 3 72 chr9 2772136 2772527 -115090100 - THE1B LTR MaLR 0 364 1 482 220 20 0 chr9 2772566 2772666 -115089961 - MER94 DNA DNA 0 134 33 25 0 0 0 chr9 2773078 2773103 -115089524 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 2773155 2773179 -115089448 + AT_rich Low_complexity Low_complexity 1 24 0 240 86 0 0 chr9 2774037 2774072 -115088555 + (TG)n Simple_repeat Simple_repeat 1 35 0 264 59 0 0 chr9 2774072 2774106 -115088521 + (GA)n Simple_repeat Simple_repeat 2 35 0 825 180 33 27 chr9 2774276 2774450 -115088177 + MLT1H LTR MaLR 1 175 -374 3185 138 66 22 chr9 2774450 2775039 -115087588 - MER41B LTR ERV1 0 635 21 228 91 0 0 chr9 2775036 2775069 -115087558 - MER41A LTR ERV1 -496 58 26 * 483 231 104 136 chr9 2775080 2775426 -115087201 + MLT1H LTR MaLR 176 510 -39 755 133 103 42 chr9 2776523 2776688 -115085939 + L1PA16 LINE L1 5992 6166 0 21 57 0 0 chr9 2776797 2776832 -115085795 + AT_rich Low_complexity Low_complexity 1 35 0 228 299 219 12 chr9 2776963 2777127 -115085500 + MIR SINE MIR 59 256 -6 346 217 29 0 chr9 2778003 2778072 -115084555 - MER5B DNA MER1_type 0 178 108 11507 118 32 81 chr9 2778076 2784404 -115078223 + L1PA8 LINE L1 12 6172 0 338 191 0 0 chr9 2784424 2784492 -115078135 + L1M4 LINE L1 4684 4751 -1395 372 22 0 0 chr9 2784494 2784539 -115078088 - LTR7 LTR ERV1 -405 45 1 3263 107 6 28 chr9 2784539 2785072 -115077555 - HERVH LTR ERV1 0 7713 7193 2840 234 4 4 chr9 2785061 2785762 -115076865 - HERVH LTR ERV1 -2699 5014 4314 * 15751 185 16 28 chr9 2785826 2789918 -115072709 - HERVH LTR ERV1 -3430 5148 1 1896 162 60 21 chr9 2789918 2790351 -115072276 - LTR7 LTR ERV1 0 450 1 9006 147 57 82 chr9 2790405 2791909 -115070718 + L1MC3 LINE L1 5653 7194 -591 244 294 11 22 chr9 2791909 2792001 -115070626 + MLT1F1 LTR MaLR 35 125 -442 9006 147 57 82 chr9 2792001 2792573 -115070054 + L1MC3 LINE L1 7194 7766 -19 2658 20 0 0 chr9 2792573 2792873 -115069754 - AluY SINE Alu -11 300 1 9006 147 57 82 chr9 2792873 2792893 -115069734 + L1MC3 LINE L1 7766 7785 0 506 233 15 3 chr9 2792897 2793016 -115069611 - MER5B DNA MER1_type -57 126 12 266 240 10 80 chr9 2793945 2794045 -115068582 - L2 LINE L2 0 3313 3221 1096 202 5 14 chr9 2794124 2794342 -115068285 + MER20 DNA MER1_type 1 216 -3 982 181 62 0 chr9 2794844 2795037 -115067590 - MER3 DNA MER1_type -4 205 1 2128 249 34 39 chr9 2797026 2797752 -115064875 + MER21B LTR ERV1 13 735 -128 2391 94 71 0 chr9 2797762 2798112 -115064515 + MER51B LTR ERV1 3 377 0 233 236 55 18 chr9 2798149 2798204 -115064423 - L2 LINE L2 -60 3212 3156 457 287 123 20 chr9 2798241 2798436 -115064191 + LTR33 LTR ERVL 1 215 -306 277 188 77 60 chr9 2798583 2798700 -115063927 + LTR33 LTR ERVL 403 521 0 407 319 60 44 chr9 2799636 2799735 -115062892 - MIR3 SINE MIR -21 187 82 2095 140 10 75 chr9 2799735 2800150 -115062477 - MLT1B LTR MaLR 0 390 3 407 319 60 44 chr9 2800150 2800232 -115062395 - MIR3 SINE MIR -126 82 3 202 306 32 0 chr9 2801019 2801081 -115061546 - MIR SINE MIR -63 145 82 481 291 14 0 chr9 2801370 2801518 -115061109 - MER103 DNA DNA -7 159 10 898 270 70 59 chr9 2802545 2803090 -115059537 + MLT1L LTR MaLR 21 467 -44 645 322 153 8 chr9 2803375 2803729 -115058898 - L2 LINE L2 -8 3305 2901 254 297 168 0 chr9 2804634 2804735 -115057892 - MIR3 SINE MIR -4 204 87 376 243 168 34 chr9 2804861 2805036 -115057591 - MIR SINE MIR -30 232 31 490 314 168 9 chr9 2805345 2805565 -115057062 + MIR SINE MIR 2 256 -6 2265 97 3 3 chr9 2805717 2806015 -115056612 - AluSp SINE Alu -15 298 1 424 278 133 17 chr9 2807271 2807512 -115055115 - L1ME3A LINE L1 -215 5947 5679 2132 124 0 0 chr9 2807685 2808015 -115054612 - AluSx SINE Alu 0 330 1 1613 170 0 56 chr9 2808021 2808327 -115054300 - AluJb SINE Alu -17 295 7 326 196 131 9 chr9 2808508 2808615 -115054012 - L1MEd LINE L1 -5998 121 2 216 323 46 39 chr9 2809707 2809837 -115052790 + L2 LINE L2 2716 2846 -468 243 0 0 0 chr9 2809894 2809921 -115052706 + (A)n Simple_repeat Simple_repeat 1 27 0 373 256 183 0 chr9 2810463 2810600 -115052027 + MIR SINE MIR 57 218 -44 217 328 101 25 chr9 2810728 2810847 -115051780 - L2 LINE L2 -9 3263 3136 752 219 17 52 chr9 2810874 2811107 -115051520 + MER33 DNA MER1_type 1 225 -99 1043 61 0 0 chr9 2811107 2811238 -115051389 + AluY SINE Alu 181 311 0 252 0 0 0 chr9 2811242 2811270 -115051357 + (TA)n Simple_repeat Simple_repeat 2 29 0 361 124 45 34 chr9 2811277 2811366 -115051261 + MER33 DNA MER1_type 259 348 -15 1849 130 22 7 chr9 2811371 2811648 -115050979 - AluSq SINE Alu -19 294 14 269 300 148 51 chr9 2811712 2811969 -115050658 - L2 LINE L2 -167 3105 2824 228 158 329 13 chr9 2812642 2812718 -115049909 + MER5A DNA MER1_type 59 158 -31 * 446 212 30 10 chr9 2812652 2812751 -115049876 - MER5A DNA MER1_type -80 109 9 * 700 333 144 19 chr9 2812744 2813384 -115049243 - L3 LINE CR1 -16 1561 842 552 287 83 47 chr9 2813565 2814035 -115048592 - L1ME4a LINE L1 -282 5839 5353 2504 100 3 11 chr9 2814231 2814612 -115048015 - L1MA2 LINE L1 0 6304 5927 268 91 121 76 chr9 2814706 2814772 -115047855 + MADE1 DNA Mariner 12 80 0 405 279 22 8 chr9 2814837 2814851 -115047776 - L1ME4a LINE L1 -1968 4178 4166 2276 95 0 10 chr9 2814851 2815156 -115047471 - AluY SINE Alu -9 302 1 405 279 22 8 chr9 2815156 2815296 -115047331 - L1ME4a LINE L1 -1980 4166 4023 744 248 8 33 chr9 2815549 2815791 -115046836 + L1MB7 LINE L1 5948 6183 -1 1257 254 45 2 chr9 2815793 2816191 -115046436 - L1MC4 LINE L1 -384 7658 7244 1815 268 14 24 chr9 2816192 2816818 -115045809 - L1MC4 LINE L1 -961 7081 6462 21 36 0 0 chr9 2818031 2818059 -115044568 + AT_rich Low_complexity Low_complexity 1 28 0 350 316 0 10 chr9 2818554 2818652 -115043975 - L2 LINE L2 0 3313 3217 687 247 86 0 chr9 2818653 2818839 -115043788 + MER63A DNA MER1_type 9 210 0 1158 326 59 52 chr9 2818839 2819806 -115042821 - L2 LINE L2 -93 3179 2204 254 294 0 0 chr9 2820011 2820079 -115042548 + MIR SINE MIR 183 250 -12 338 157 12 0 chr9 2820081 2820164 -115042463 + CT-rich Low_complexity Low_complexity 2 85 0 222 125 25 0 chr9 2820277 2820317 -115042310 + (TG)n Simple_repeat Simple_repeat 1 41 0 1465 247 99 53 chr9 2820724 2821063 -115041564 - MLT1G1 LTR MaLR -15 580 258 1847 146 27 7 chr9 2821063 2821364 -115041263 - AluSx SINE Alu -5 307 1 640 246 0 0 chr9 2821370 2821492 -115041135 - FLAM_A SINE Alu -10 123 2 1465 247 99 53 chr9 2821492 2821691 -115040936 - MLT1G1 LTR MaLR -341 254 10 2537 53 3 0 chr9 2823104 2823408 -115039219 + AluYa5 SINE Alu 2 306 -5 31 68 0 0 chr9 2823807 2823866 -115038761 + AT_rich Low_complexity Low_complexity 1 59 0 237 276 150 0 chr9 2824236 2824363 -115038264 + MER117 DNA MER1_type 51 196 -1 372 270 63 9 chr9 2825907 2826018 -115036609 + MIR SINE MIR 8 124 -138 385 273 113 92 chr9 2826023 2826316 -115036311 - L2 LINE L2 0 3272 2974 245 281 177 0 chr9 2826313 2826409 -115036218 + MIR SINE MIR 115 227 -35 * 1317 278 55 26 chr9 2826693 2827147 -115035480 + LTR16C LTR ERVL 1 467 -24 970 294 71 34 chr9 2827157 2827664 -115034963 + LTR67 LTR ERVL 23 548 -9 601 270 82 0 chr9 2827670 2827903 -115034724 - LTR33A LTR ERVL 0 523 272 204 315 121 60 chr9 2827965 2828114 -115034513 - L2 LINE L2 -1141 2173 2016 3057 161 21 3 chr9 2828658 2829237 -115033390 - L1MA8 LINE L1 -22 6269 5681 320 327 69 25 chr9 2829242 2829401 -115033226 + MIR SINE MIR 20 185 -77 186 43 0 0 chr9 2829514 2829537 -115033090 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 2830590 2830611 -115032016 + AT_rich Low_complexity Low_complexity 1 21 0 396 255 102 10 chr9 2831106 2831302 -115031325 - HAL1 LINE L1 -296 2211 1998 749 243 78 19 chr9 2831328 2831534 -115031093 - MIR SINE MIR -31 231 14 615 265 90 13 chr9 2831650 2831884 -115030743 - HAL1 LINE L1 -636 1871 1620 1155 248 110 63 chr9 2831903 2832676 -115029951 - HAL1 LINE L1 -1009 1498 690 349 391 14 0 chr9 2833598 2833736 -115028891 - MIR SINE MIR -98 164 25 435 309 33 48 chr9 2833913 2834123 -115028504 + L1MEd LINE L1 122 328 -5791 741 182 0 0 chr9 2834253 2834374 -115028253 + AluJo/FLAM SINE Alu 1 121 -191 1431 186 11 22 chr9 2834374 2834643 -115027984 + AluJo SINE Alu 27 292 -20 932 279 36 68 chr9 2834654 2835393 -115027234 + L1MEd LINE L1 494 1209 -4910 427 292 64 68 chr9 2835409 2835628 -115026999 + HAL1 LINE L1 1301 1518 -989 231 279 31 54 chr9 2836264 2836393 -115026234 + L1ME LINE L1 5610 5735 -386 417 281 136 28 chr9 2836579 2836875 -115025752 + L1ME4a LINE L1 5335 5689 -432 201 74 0 0 chr9 2836875 2836902 -115025725 + (TG)n Simple_repeat Simple_repeat 2 28 0 417 281 136 28 chr9 2836902 2837029 -115025598 + L1ME4a LINE L1 5689 5801 -320 30 59 0 0 chr9 2837059 2837110 -115025517 + AT_rich Low_complexity Low_complexity 1 51 0 243 225 78 47 chr9 2837136 2837265 -115025362 + L1ME4a LINE L1 5977 6109 -12 218 175 0 18 chr9 2837379 2837436 -115025191 + GA-rich Low_complexity Low_complexity 2 57 0 24 77 0 0 chr9 2837543 2837595 -115025032 + AT_rich Low_complexity Low_complexity 1 52 0 430 308 127 60 chr9 2838425 2838841 -115023786 + L2 LINE L2 2804 3247 -25 1719 243 94 8 chr9 2838843 2839354 -115023273 + L1ME3A LINE L1 5613 6167 -3 211 338 12 12 chr9 2840589 2840669 -115021958 + L2 LINE L2 2970 3049 -223 647 203 49 7 chr9 2840784 2840927 -115021700 - MIR SINE MIR -3 259 111 273 348 71 7 chr9 2842306 2842447 -115020180 + L2 LINE L2 3116 3265 -7 5214 175 17 6 chr9 2843522 2844585 -115018042 - L1 LINE L1 -1894 4252 3178 305 291 101 20 chr9 2844586 2844734 -115017893 - L2 LINE L2 -274 2998 2839 1810 101 42 32 chr9 2844787 2845095 -115017532 + L1MA3 LINE L1 5994 6304 -1 269 284 216 61 chr9 2845119 2845397 -115017230 + L2 LINE L2 2988 3308 -5 2212 90 0 0 chr9 2845416 2845717 -115016910 + L1PB1 LINE L1 5851 6151 0 427 286 138 22 chr9 2846931 2847162 -115015465 - MIR SINE MIR 0 262 5 847 140 25 13 chr9 2848838 2848995 -115013632 + L1M4b LINE L1 -520 4294966934 -6690 1365 216 28 21 chr9 2849000 2849389 -115013238 + L1 LINE L1 4848 5239 -907 297 54 0 0 chr9 2849390 2849427 -115013200 - MER61A LTR ERV1 0 343 307 337 57 0 38 chr9 2849427 2849480 -115013147 - MLT2A2 LTR ERVL 0 453 403 375 270 0 0 chr9 2849508 2849597 -115013030 - L1MC4 LINE L1 -1340 6702 6614 339 216 45 23 chr9 2849579 2849667 -115012960 + L1MC4 LINE L1 6614 6703 -1339 * 2924 81 0 12 chr9 2849669 2849686 -115012941 - MLT2A1 LTR ERVL -40 404 388 189 107 0 0 chr9 2849686 2849714 -115012913 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 2924 81 0 12 chr9 2849714 2850105 -115012522 - MLT2A1 LTR ERVL -56 388 1 1531 140 29 57 chr9 2850195 2850545 -115012082 + L1MA9 LINE L1 5738 6077 -235 528 214 14 4 chr9 2850551 2850684 -115011943 + L1MA9 LINE L1 6180 6334 0 4612 239 52 11 chr9 2850692 2851836 -115010791 + L1M4b LINE L1 -372 818 -5510 281 230 63 0 chr9 2851844 2851961 -115010666 + L1M4b LINE L1 1806 1886 -4540 21379 37 12 10 chr9 2852226 2855709 -115006918 - L1PA4 LINE L1 0 6155 2667 5559 109 6 13 chr9 2855772 2856632 -115005995 + L1PA10 LINE L1 5305 6158 -10 271 173 245 43 chr9 2856655 2856671 -115005956 + L1MB8 LINE L1 5179 5190 -956 1900 181 33 33 chr9 2856671 2857035 -115005592 - THE1B LTR MaLR 0 364 1 271 173 245 43 chr9 2857035 2857157 -115005470 + L1MB8 LINE L1 5190 5345 -801 * 13454 147 37 21 chr9 2857156 2857505 -115005122 + L1PBa LINE L1 3 345 -6518 1800 94 4 33 chr9 2857505 2857750 -115004877 + AluSx SINE Alu 50 287 -25 203 0 0 36 chr9 2857754 2857782 -115004845 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 13454 147 37 21 chr9 2857782 2859939 -115002688 + L1PBa LINE L1 347 2552 -4311 12078 186 49 14 chr9 2859951 2866361 -114996266 + L1PB1 LINE L1 1 6864 -3 25 0 0 0 chr9 2866361 2866386 -114996241 + AT_rich Low_complexity Low_complexity 1 25 0 3619 179 28 43 chr9 2866393 2866538 -114996089 + L1MB8 LINE L1 5338 5484 -694 2166 122 0 3 chr9 2866538 2866832 -114995795 - AluSx SINE Alu -19 293 1 3619 179 28 43 chr9 2866832 2867537 -114995090 + L1MB8 LINE L1 5484 6175 -3 5862 49 3 0 chr9 2867757 2868474 -114994153 + L1PA7 LINE L1 5435 6153 -1 830 356 30 8 chr9 2868642 2869013 -114993614 - LTR16C LTR ERVL -11 480 102 340 236 62 35 chr9 2869733 2869877 -114992750 + MER103 DNA DNA 17 164 -2 538 281 43 0 chr9 2869942 2870081 -114992546 - MIR3 SINE MIR -51 157 13 391 239 141 33 chr9 2870442 2870626 -114992001 + MLT1J2 LTR MaLR 244 447 -3 563 337 80 52 chr9 2870887 2871581 -114991046 + L2 LINE L2 2550 3250 -22 210 118 0 0 chr9 2871813 2871847 -114990780 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 277 323 42 0 chr9 2871946 2872042 -114990585 + MIR SINE MIR 16 115 -147 435 286 28 45 chr9 2872225 2872403 -114990224 - MIR SINE MIR -84 178 4 274 351 105 12 chr9 2872866 2873037 -114989590 - MIR3 SINE MIR -3 205 19 196 286 44 33 chr9 2874519 2874610 -114988017 + MIR SINE MIR 2 93 -169 182 150 25 0 chr9 2874758 2874798 -114987829 + (CATAT)n Simple_repeat Simple_repeat 3 43 0 1130 284 94 23 chr9 2875473 2876047 -114986580 + MLT1L LTR MaLR 1 615 0 224 345 12 12 chr9 2876091 2876175 -114986452 + L2 LINE L2 3180 3263 -9 392 355 26 19 chr9 2876514 2876669 -114985958 - L2 LINE L2 -1 3271 3116 2020 142 10 0 chr9 2877057 2877359 -114985268 + AluSx SINE Alu 1 305 -7 370 291 82 0 chr9 2877704 2877814 -114984813 + MIR SINE MIR 29 147 -115 1913 163 29 27 chr9 2877839 2878213 -114984414 + THE1C LTR MaLR 1 375 0 320 202 24 12 chr9 2878358 2878442 -114984185 + L1ME3A LINE L1 6077 6161 -9 23 0 0 0 chr9 2878587 2878610 -114984017 + AT_rich Low_complexity Low_complexity 1 23 0 340 264 90 0 chr9 2878738 2878882 -114983745 - L1ME4a LINE L1 -289 5832 5676 369 0 0 0 chr9 2879738 2879779 -114982848 + (CA)n Simple_repeat Simple_repeat 1 41 0 265 330 92 63 chr9 2881350 2881698 -114980929 + L2 LINE L2 2362 2719 -595 1489 217 28 12 chr9 2882011 2882370 -114980257 + MLT1A1 LTR MaLR 1 365 0 367 115 297 40 chr9 2882371 2882519 -114980108 - MER53 DNA DNA -2 187 2 384 283 83 49 chr9 2882615 2882820 -114979807 + HAL1 LINE L1 1 212 -2295 246 332 50 50 chr9 2882940 2883160 -114979467 + HAL1 LINE L1 410 629 -1878 834 250 126 57 chr9 2883235 2883778 -114978849 + HAL1 LINE L1 780 1381 -1126 537 135 21 0 chr9 2883778 2883874 -114978753 + L1MB3 LINE L1 6083 6180 -3 834 250 126 57 chr9 2883874 2884011 -114978616 + HAL1 LINE L1 1381 1507 -1000 456 175 0 0 chr9 2884028 2884108 -114978519 + MADE1 DNA Mariner 1 80 0 1872 146 24 3 chr9 2884149 2884444 -114978183 + AluSx SINE Alu 3 303 -9 196 269 115 0 chr9 2884714 2884766 -114977861 - L2 LINE L2 -1 3271 3214 2128 152 0 15 chr9 2884774 2885116 -114977511 + MER1B DNA MER1_type 1 337 0 203 325 77 41 chr9 2885259 2885453 -114977174 - L2 LINE L2 -162 3110 2910 207 384 139 17 chr9 2885649 2885821 -114976806 + L2 LINE L2 3076 3268 -4 216 274 96 14 chr9 2888110 2888183 -114974444 - L2 LINE L2 -5 3267 3189 950 307 56 14 chr9 2888199 2888554 -114974073 - MLT1I LTR MaLR 0 409 40 22 0 0 0 chr9 2888989 2889011 -114973616 + AT_rich Low_complexity Low_complexity 1 22 0 311 299 0 21 chr9 2889064 2889161 -114973466 + L1MDa LINE L1 2459 2553 -3987 840 163 0 7 chr9 2889162 2889297 -114973330 + AluJo SINE Alu 1 134 -178 536 225 45 64 chr9 2889368 2889595 -114973032 + L1MDa LINE L1 2637 2860 -3680 2222 91 3 0 chr9 2889595 2889882 -114972745 + AluSp SINE Alu 1 288 -25 536 225 45 64 chr9 2889882 2889921 -114972706 + L1MDa LINE L1 2860 2898 -3642 3001 144 44 94 chr9 2889924 2890680 -114971947 + L1MB2 LINE L1 5449 6166 -5 834 272 121 49 chr9 2890739 2891273 -114971354 - MLT1F1 LTR MaLR -1 566 1 705 266 77 29 chr9 2891275 2891663 -114970964 + L1MDa LINE L1 2952 3363 -3177 2121 88 4 0 chr9 2891663 2891936 -114970691 + AluY SINE Alu 34 307 -4 705 266 77 29 chr9 2891936 2891964 -114970663 + L1MDa LINE L1 3363 3388 -3152 5644 180 161 28 chr9 2892185 2893749 -114968878 - MER52A LTR ERV1 0 1755 6 2879 249 58 43 chr9 2894043 2896328 -114966299 - L1 LINE L1 -3534 2816 830 1999 150 10 0 chr9 2896351 2896645 -114965982 + AluSx SINE Alu 1 297 -15 21629 100 9 5 chr9 2896647 2902312 -114960315 + L1PA7 LINE L1 748 6469 0 931 278 116 10 chr9 2902540 2902936 -114959691 + HAL1 LINE L1 1530 1967 -540 1101 284 149 15 chr9 2903627 2904163 -114958464 - L1 LINE L1 -5672 609 2 467 269 52 84 chr9 2904412 2905392 -114957235 + L1MEd LINE L1 648 1692 -884 893 241 67 15 chr9 2905606 2906008 -114956619 - L1M4 LINE L1 -2751 3395 2973 600 263 32 21 chr9 2906481 2906840 -114955787 + L1MEd LINE L1 2113 2437 -3778 3153 100 0 4 chr9 2906851 2907303 -114955324 - MER9 LTR ERVK -61 450 1 1542 246 66 26 chr9 2907464 2908203 -114954424 + L1MEd LINE L1 2704 3472 -2743 192 304 18 0 chr9 2908545 2908601 -114954026 + L2 LINE L2 3214 3270 -2 1349 214 121 6 chr9 2908708 2909063 -114953564 + MSTD LTR MaLR 1 396 0 2402 124 5 22 chr9 2911120 2911490 -114951137 + THE1B LTR MaLR 1 364 0 230 356 0 26 chr9 2912133 2912248 -114950379 - L2 LINE L2 -179 3093 2982 2276 94 0 0 chr9 2913666 2913954 -114948673 - AluSg SINE Alu -22 288 1 218 319 56 14 chr9 2914037 2914109 -114948518 - L2 LINE L2 -44 3228 3154 189 292 157 0 chr9 2914138 2914227 -114948400 + L2 LINE L2 3200 3302 -11 426 238 65 38 chr9 2914738 2914923 -114947704 + L1ME4a LINE L1 5929 6118 -3 299 222 52 30 chr9 2915486 2915621 -114947006 + L1ME4a LINE L1 5984 6121 0 2353 137 72 10 chr9 2916353 2916756 -114945871 + MSTA LTR MaLR 1 428 0 224 234 0 0 chr9 2917053 2917100 -114945527 + MER91A DNA MER1_type 2 48 -148 1741 194 85 8 chr9 2917194 2917595 -114945032 + MLT1C LTR MaLR 34 465 -2 225 224 0 52 chr9 2918919 2918977 -114943650 + MIR SINE MIR 99 153 -55 199 54 54 0 chr9 2919117 2919154 -114943473 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 517 197 230 0 chr9 2919158 2919310 -114943317 + MER5A DNA MER1_type 3 189 0 706 226 65 0 chr9 2919814 2919982 -114942645 - MER20 DNA MER1_type 0 219 41 2576 134 25 2 chr9 2919987 2920402 -114942225 - MSTB LTR MaLR 0 414 2 1479 221 25 43 chr9 2920708 2921152 -114941475 - LTR40b LTR ERVL 0 462 27 211 336 159 0 chr9 2921163 2921270 -114941357 + L2 LINE L2 3186 3309 -4 2142 195 86 13 chr9 2921352 2921819 -114940808 - MLT1D LTR MaLR -2 503 3 232 322 226 0 chr9 2922242 2922419 -114940208 - MIR SINE MIR -18 244 28 998 235 9 0 chr9 2922528 2922745 -114939882 + MER58A DNA MER1_type 1 219 -5 2016 183 113 33 chr9 2922745 2923185 -114939442 + MLT2B1 LTR ERVL 1 484 -36 419 35 18 0 chr9 2923185 2923242 -114939385 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2016 183 113 33 chr9 2923242 2923281 -114939346 + MLT2B1 LTR ERVL 484 518 -2 315 303 0 55 chr9 2923292 2923401 -114939226 - L1ME3A LINE L1 -105 6065 5963 395 260 1 9 chr9 2923498 2923631 -114938996 - L1ME3A LINE L1 -469 5693 5561 255 103 0 0 chr9 2923631 2923670 -114938957 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5236 154 31 23 chr9 2923670 2923919 -114938708 - L1MA5A LINE L1 -9 6288 6042 2034 151 15 0 chr9 2923919 2924250 -114938377 + MER1B DNA MER1_type 2 337 0 5236 154 31 23 chr9 2924250 2925797 -114936830 - L1MA5A LINE L1 -255 6042 4474 23 0 0 0 chr9 2925797 2925820 -114936807 + AT_rich Low_complexity Low_complexity 1 23 0 4554 144 5 1 chr9 2925820 2926588 -114936039 - L1PA13 LINE L1 -6 6157 5387 * 5751 169 8 6 chr9 2926582 2927666 -114934961 - L1PA13 LINE L1 -1315 4831 3745 9179 223 26 13 chr9 2927666 2930469 -114932158 - L1 LINE L1 -1643 5145 2349 24 32 0 0 chr9 2930475 2930506 -114932121 + AT_rich Low_complexity Low_complexity 1 31 0 10530 193 28 52 chr9 2930522 2932850 -114929777 - L1 LINE L1 -4514 2275 3 1842 257 120 45 chr9 2932890 2934672 -114927955 - L1MC/D LINE L1 -707 5444 3632 21 36 0 0 chr9 2934973 2935001 -114927626 + AT_rich Low_complexity Low_complexity 1 28 0 802 263 64 57 chr9 2935027 2935765 -114926862 - L1MC/D LINE L1 -2630 3516 2774 24 32 0 0 chr9 2935843 2935874 -114926753 + AT_rich Low_complexity Low_complexity 1 31 0 212 143 48 0 chr9 2935928 2935970 -114926657 + (TATG)n Simple_repeat Simple_repeat 4 47 0 312 304 7 22 chr9 2936823 2936961 -114925666 + CT-rich Low_complexity Low_complexity 3 138 0 583 226 0 51 chr9 2937391 2937528 -114925099 - FLAM_C SINE Alu -3 130 1 2297 116 0 3 chr9 2937846 2938149 -114924478 - AluSq SINE Alu -11 302 1 658 282 39 83 chr9 2938417 2938900 -114923727 + MLT1J LTR MaLR 23 484 -27 705 243 53 37 chr9 2938936 2939179 -114923448 + MIR SINE MIR 14 260 -2 207 0 0 0 chr9 2940453 2940476 -114922151 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1069 152 0 6 chr9 2941394 2941559 -114921068 + AluSg/x SINE Alu 125 288 -24 1376 238 42 118 chr9 2942783 2942957 -114919670 + MLT1E LTR MaLR 5 191 -402 2408 98 3 0 chr9 2942957 2943264 -114919363 + AluSg SINE Alu 1 308 -2 1376 238 42 118 chr9 2943264 2943714 -114918913 + MLT1E LTR MaLR 191 581 -12 802 147 84 101 chr9 2946123 2946361 -114916266 + MLT1B LTR MaLR 22 255 -135 2474 180 30 8 chr9 2946749 2947243 -114915384 + MLT1D LTR MaLR 1 505 0 734 133 0 8 chr9 2947253 2947381 -114915246 + (TCCCC)n Simple_repeat Simple_repeat 3 129 0 370 308 0 0 chr9 2947774 2947865 -114914762 - MIR SINE MIR -88 174 84 310 232 62 40 chr9 2948140 2948366 -114914261 + L1MC/D LINE L1 5600 5829 -303 471 306 100 58 chr9 2948527 2948926 -114913701 + L1MC/D LINE L1 3925 4340 -1806 42 57 0 0 chr9 2949016 2949086 -114913541 + AT_rich Low_complexity Low_complexity 1 70 0 425 308 47 65 chr9 2949173 2949911 -114912716 + L1MC/D LINE L1 4549 5277 -869 1105 279 69 42 chr9 2949921 2950369 -114912258 + L1MC/D LINE L1 5318 5777 -2031 22 35 0 0 chr9 2950369 2950398 -114912229 + AT_rich Low_complexity Low_complexity 1 29 0 969 193 0 0 chr9 2950399 2950560 -114912067 + MSTB LTR MaLR 1 161 -265 * 2366 184 92 2 chr9 2950551 2950987 -114911640 - LTR36 LTR ERV1 -40 571 97 4888 152 38 7 chr9 2951004 2951811 -114910816 - MSTA-int LTR MaLR -819 832 1 2436 174 48 17 chr9 2951811 2952226 -114910401 - MSTA LTR MaLR 0 428 1 354 111 122 11 chr9 2952227 2952317 -114910310 - LTR36 LTR ERV1 -511 100 1 893 167 0 0 chr9 2952317 2952455 -114910172 + MSTB LTR MaLR 287 424 -2 4745 204 47 6 chr9 2952466 2953410 -114909217 + MSTB-int LTR MaLR 5 986 -665 191 325 84 0 chr9 2954045 2954128 -114908499 - L2 LINE L2 0 3272 3183 231 304 72 16 chr9 2955609 2955734 -114906893 + L1ME LINE L1 324 455 -5615 382 224 64 55 chr9 2955803 2956023 -114906604 + L1ME LINE L1 446 662 -5421 1403 130 5 0 chr9 2956052 2956252 -114906375 + AluSx SINE Alu 1 201 -111 884 256 0 0 chr9 2956260 2956432 -114906195 - MER58A DNA MER1_type -52 172 1 2298 350 57 25 chr9 2956486 2958550 -114904077 - ERVL LTR ERVL -1151 4613 2453 413 341 24 54 chr9 2958545 2959012 -114903615 - ERVL LTR ERVL -3829 1167 728 * 182 345 136 9 chr9 2960116 2960226 -114902401 - L2 LINE L2 -20 3293 3170 2643 173 22 7 chr9 2960317 2960763 -114901864 + LTR32 LTR ERVL 19 471 0 703 293 43 17 chr9 2961030 2961389 -114901238 - MLT1I LTR MaLR 0 409 2 471 285 36 112 chr9 2961412 2961717 -114900910 + L2 LINE L2 2990 3271 -1 503 210 145 22 chr9 2962459 2962622 -114900005 + MER5A DNA MER1_type 4 189 0 246 297 47 27 chr9 2963483 2963631 -114898996 + L2 LINE L2 1597 1747 -1567 182 364 119 36 chr9 2963845 2964257 -114898370 + L2 LINE L2 2822 3267 -5 1929 135 0 14 chr9 2965333 2965647 -114896980 - AluSx SINE Alu 0 310 1 21 82 0 0 chr9 2966362 2966411 -114896216 + AT_rich Low_complexity Low_complexity 1 49 0 27 49 0 0 chr9 2966447 2966488 -114896139 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 2966761 2966791 -114895836 + AT_rich Low_complexity Low_complexity 1 30 0 314 242 31 47 chr9 2967509 2967612 -114895015 - MIR SINE MIR -108 100 3 * 492 195 146 8 chr9 2967612 2967728 -114894899 - MER5A DNA MER1_type -15 174 42 2236 91 20 14 chr9 2967978 2968275 -114894352 - AluSq SINE Alu -14 299 1 4777 210 48 10 chr9 2968334 2968533 -114894094 - MER45B DNA AcHobo -548 1033 843 2338 88 0 0 chr9 2968533 2968828 -114893799 - AluY SINE Alu -16 295 1 4777 210 48 10 chr9 2968828 2969620 -114893007 - MER45B DNA AcHobo -738 843 4 3152 95 27 0 chr9 2969743 2970154 -114892473 + L1PA10 LINE L1 5743 6164 -4 2138 133 0 0 chr9 2971339 2971633 -114890994 - AluSg SINE Alu -16 294 1 469 310 62 31 chr9 2971677 2971903 -114890724 - L1MC/D LINE L1 -2034 5774 5542 2212 181 0 3 chr9 2972126 2972491 -114890136 + MLT2D LTR ERVL 1 364 -50 633 171 0 0 chr9 2972491 2972608 -114890019 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 279 117 0 83 chr9 2972608 2972668 -114889959 + MLT2D LTR ERVL 343 397 0 368 273 58 65 chr9 2972709 2972984 -114889643 + L1ME LINE L1 3951 4223 -1923 254 311 56 11 chr9 2973351 2973441 -114889186 - MIR SINE MIR -95 113 20 956 251 4 30 chr9 2973465 2973696 -114888931 - MIR SINE MIR -1 261 37 21 0 0 0 chr9 2973777 2973798 -114888829 + AT_rich Low_complexity Low_complexity 1 21 0 2295 78 0 0 chr9 2973798 2974104 -114888523 + AluY SINE Alu 1 306 0 225 288 45 15 chr9 2974310 2974376 -114888251 + MIR SINE MIR 20 87 -175 694 265 26 48 chr9 2974500 2974730 -114887897 + MIR SINE MIR 36 260 -2 210 71 0 0 chr9 2975574 2975602 -114887025 + (TG)n Simple_repeat Simple_repeat 1 28 0 662 272 56 75 chr9 2975912 2976592 -114886035 + L1ME LINE L1 5148 5819 -302 1381 205 4 4 chr9 2976652 2976915 -114885712 + AluJo SINE Alu 32 294 -18 398 151 27 0 chr9 2977020 2977093 -114885534 + MER116 DNA Mariner 1 75 -5 21 0 0 0 chr9 2977094 2977115 -114885512 + AT_rich Low_complexity Low_complexity 1 21 0 421 265 71 109 chr9 2977383 2977621 -114885006 - MIR SINE MIR -25 237 9 783 279 59 41 chr9 2977920 2977996 -114884631 - LTR33 LTR ERVL -28 493 420 1291 162 69 0 chr9 2977996 2978200 -114884427 + MER20 DNA MER1_type 2 219 0 783 279 59 41 chr9 2978200 2978464 -114884163 - LTR33 LTR ERVL -101 420 147 615 159 102 64 chr9 2978634 2978791 -114883836 + MLT1A2 LTR MaLR 1 163 -211 193 204 0 56 chr9 2978853 2978961 -114883666 + CT-rich Low_complexity Low_complexity 6 107 0 908 184 61 31 chr9 2978961 2979157 -114883470 + MLT1A2 LTR MaLR 173 374 0 364 268 274 6 chr9 2980040 2980208 -114882419 + MIR SINE MIR 2 214 -48 205 356 34 17 chr9 2980294 2980412 -114882215 - MIR SINE MIR -106 156 37 427 237 140 77 chr9 2980746 2980874 -114881753 - MIR SINE MIR -9 253 106 2434 72 7 7 chr9 2980874 2981181 -114881446 + AluSc SINE Alu 1 307 -2 427 237 140 77 chr9 2981181 2981259 -114881368 - MIR SINE MIR -156 106 34 4910 156 37 21 chr9 2981811 2983722 -114878905 + L1MA2 LINE L1 15 1895 -5828 2296 113 0 0 chr9 2983722 2984023 -114878604 - AluSg SINE Alu -9 301 1 4910 156 37 21 chr9 2984023 2985051 -114877576 + L1MA2 LINE L1 1895 2906 -4817 2845 100 11 0 chr9 2985051 2985421 -114877206 - THE1C LTR MaLR -1 374 1 11002 123 14 30 chr9 2985421 2987027 -114875600 - THE1C-int LTR MaLR 0 1580 1 2315 131 50 8 chr9 2987027 2987387 -114875240 - THE1C LTR MaLR 0 375 1 4910 156 37 21 chr9 2987387 2988656 -114873971 + L1MA2 LINE L1 2906 4154 -3569 977 62 86 0 chr9 2988656 2988784 -114873843 + MER85 DNA T2_type 1 139 0 4910 156 37 21 chr9 2988784 2991997 -114870630 + L1MA2 LINE L1 4154 7723 0 477 302 189 18 chr9 2992041 2992326 -114870301 - MLT1I LTR MaLR -7 402 69 25 65 0 0 chr9 2992593 2992639 -114869988 + AT_rich Low_complexity Low_complexity 1 46 0 2227 103 3 7 chr9 2992639 2992939 -114869688 - AluSx SINE Alu -13 299 1 273 324 72 0 chr9 2994203 2994314 -114868313 + MIR SINE MIR 71 189 -73 343 241 23 0 chr9 2994770 2994857 -114867770 - MER96 DNA MER1_type? -81 94 6 183 233 83 17 chr9 2995045 2995105 -114867522 + MIR SINE MIR 83 146 -62 287 231 0 26 chr9 2995149 2995227 -114867400 + L1MC5 LINE L1 7836 7911 -50 21 0 0 0 chr9 2995418 2995439 -114867188 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 2996567 2996588 -114866039 + AT_rich Low_complexity Low_complexity 1 21 0 2623 129 3 3 chr9 2996723 2997087 -114865540 + THE1B LTR MaLR 1 364 0 2071 192 117 16 chr9 2997891 2998344 -114864283 + MLT1D LTR MaLR 1 499 -6 2199 102 77 112 chr9 2998573 2999012 -114863615 + MSTA LTR MaLR 1 424 -4 189 313 0 0 chr9 2999033 2999081 -114863546 + MIR SINE MIR 68 115 -93 335 147 147 42 chr9 2999260 2999355 -114863272 + MIR3 SINE MIR 98 202 -6 297 235 0 29 chr9 2999516 2999584 -114863043 - L2 LINE L2 0 3272 3207 774 224 12 0 chr9 3000911 3001072 -114861555 + MER69A DNA AcHobo 1 163 -14 967 158 184 11 chr9 3001334 3001524 -114861103 + MER58A DNA MER1_type 2 224 0 349 296 82 47 chr9 3001736 3001969 -114860658 + L2 LINE L2 3073 3313 0 1990 119 59 54 chr9 3002136 3002507 -114860120 + THE1C LTR MaLR 1 373 -2 894 271 54 7 chr9 3003088 3003418 -114859209 - MLT1H1 LTR MaLR -4 551 171 255 259 99 25 chr9 3006246 3006327 -114856300 - MIR3 SINE MIR -11 197 111 296 216 0 0 chr9 3008661 3008712 -114853915 + L2 LINE L2 3252 3302 -11 443 302 26 0 chr9 3008950 3009066 -114853561 + MIR SINE MIR 64 182 -80 294 239 0 14 chr9 3009115 3009186 -114853441 + HsTC2 DNA Tc2 1827 1896 -2 411 276 178 36 chr9 3009808 3010145 -114852482 + L1MC4a LINE L1 5527 5911 -1897 21 0 0 0 chr9 3010145 3010166 -114852461 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 3010332 3010368 -114852259 + AT_rich Low_complexity Low_complexity 1 36 0 4161 172 80 13 chr9 3011470 3012244 -114850383 - LTR1B LTR ERV1 0 826 1 25 0 0 0 chr9 3012540 3012565 -114850062 + AT_rich Low_complexity Low_complexity 1 25 0 2368 172 63 27 chr9 3013075 3013516 -114849111 - LTR32 LTR ERVL 0 471 15 233 282 225 8 chr9 3013526 3013650 -114848977 + MIR SINE MIR 7 154 -63 1983 114 61 10 chr9 3013657 3013954 -114848673 + AluSx SINE Alu 1 312 0 792 287 137 20 chr9 3014707 3015197 -114847430 - L2 LINE L2 -1 3312 2767 333 226 20 88 chr9 3015212 3015314 -114847313 + LTR16A LTR ERVL 358 457 0 818 153 200 12 chr9 3015646 3015816 -114846811 + AluSg/x SINE Alu 71 272 -37 3185 111 12 10 chr9 3016103 3016522 -114846105 + MER4E LTR ERV1 1 503 -263 1890 141 0 0 chr9 3016522 3016798 -114845829 + AluSx SINE Alu 37 312 0 3185 111 12 10 chr9 3016798 3017061 -114845566 + MER4E LTR ERV1 503 764 -2 700 196 14 7 chr9 3017301 3017444 -114845183 - MER5A DNA MER1_type -45 144 1 312 266 124 80 chr9 3017448 3017674 -114844953 + MLT1J LTR MaLR 274 509 -2 3136 71 2 117 chr9 3018513 3019019 -114843608 - LTR7 LTR ERV1 -2 448 1 2304 102 59 13 chr9 3019019 3019392 -114843235 - HERVH LTR ERV1 0 7713 7324 1383 129 18 5 chr9 3019392 3019609 -114843018 - HERVH LTR ERV1 -1894 5819 5600 3100 127 3 2 chr9 3019610 3020230 -114842397 - HERVH LTR ERV1 -2564 5149 4481 * 5989 97 5 2 chr9 3020227 3021079 -114841548 - HERVH LTR ERV1 -3720 3993 3140 * 15227 112 24 27 chr9 3021058 3023805 -114838822 - HERVH LTR ERV1 -4718 2995 126 488 320 136 19 chr9 3024183 3024389 -114838238 + MIR SINE MIR 18 247 -15 728 266 13 42 chr9 3024846 3025083 -114837544 - MIR SINE MIR -3 259 30 188 178 67 67 chr9 3025244 3025289 -114837338 - L2 LINE L2 -86 3186 3142 192 287 35 46 chr9 3026037 3026124 -114836503 - L2 LINE L2 -168 3104 3019 644 256 207 33 chr9 3027051 3027501 -114835126 - HAL1 LINE L1 -24 2483 1956 814 190 42 60 chr9 3027925 3028141 -114834486 + MLT1L LTR MaLR 397 608 -7 1389 250 113 53 chr9 3028258 3028941 -114833686 - HAL1 LINE L1 -689 1818 1095 1118 209 25 4 chr9 3028944 3029179 -114833448 - AluJb SINE Alu -5 307 68 291 274 146 46 chr9 3029200 3029550 -114833077 - HAL1 LINE L1 -1469 1038 654 284 284 210 62 chr9 3029573 3030073 -114832554 - HAL1 LINE L1 -1933 574 1 2315 56 10 3 chr9 3030726 3031014 -114831613 - AluY SINE Alu -21 290 1 240 221 0 73 chr9 3032040 3032071 -114830556 - Tigger5 DNA MER2_type -355 63 38 2023 141 0 0 chr9 3032071 3032355 -114830272 + AluSx SINE Alu 13 296 -16 240 221 0 73 chr9 3032355 3032391 -114830236 - Tigger5 DNA MER2_type -380 38 1 2462 57 7 0 chr9 3032394 3032695 -114829932 - AluY SINE Alu -8 303 1 452 219 67 37 chr9 3032908 3033087 -114829540 + MER104 DNA Tc2 1 182 0 501 224 179 0 chr9 3033274 3033430 -114829197 + MIR SINE MIR 3 186 -76 487 110 0 0 chr9 3034182 3034255 -114828372 - Alu SINE Alu -3 307 235 1938 176 56 8 chr9 3034396 3034771 -114827856 + MER52A LTR ERV1 1361 1753 -2 1749 107 51 4 chr9 3034897 3035150 -114827477 - AluSq SINE Alu -48 265 1 268 393 51 9 chr9 3036096 3036432 -114826195 + HERV16 LTR ERVL 1023 1372 -3624 1081 337 80 18 chr9 3036497 3037176 -114825451 + HERV16 LTR ERVL 1512 2232 -3422 454 271 24 59 chr9 3037197 3037367 -114825260 - MIR SINE MIR -98 164 1 1541 240 272 25 chr9 3038121 3039211 -114823416 - L2 LINE L2 -10 3303 1927 23 0 0 0 chr9 3039479 3039502 -114823125 + AT_rich Low_complexity Low_complexity 1 23 0 908 274 42 33 chr9 3039515 3039851 -114822776 + L1ME LINE L1 5384 5722 -399 180 0 0 0 chr9 3040069 3040089 -114822538 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2227 267 192 39 chr9 3040206 3041657 -114820970 - L2 LINE L2 -1 3312 1649 857 139 46 13 chr9 3042721 3042872 -114819755 + MER20 DNA MER1_type 2 157 -62 531 281 108 25 chr9 3043873 3044076 -114818551 - MIR SINE MIR 0 262 43 843 249 182 44 chr9 3044374 3044831 -114817796 + HAL1 LINE L1 1230 1749 -758 1122 224 102 63 chr9 3044994 3045189 -114817438 + HAL1 LINE L1 1996 2182 -325 1347 197 66 16 chr9 3045189 3045509 -114817118 + MER46C DNA MER2_type 2 337 -1 1122 224 102 63 chr9 3045509 3045805 -114816822 + HAL1 LINE L1 2182 2506 -1 333 321 15 22 chr9 3046574 3046711 -114815916 + MIR SINE MIR 17 152 -110 933 135 47 57 chr9 3046730 3046922 -114815705 - MER20 DNA MER1_type -7 212 23 358 299 43 37 chr9 3047155 3047319 -114815308 - MIR3 SINE MIR -9 199 35 203 319 14 0 chr9 3048001 3048070 -114814557 + (TATG)n Simple_repeat Simple_repeat 2 71 0 910 189 0 12 chr9 3048176 3048340 -114814287 - AluJ SINE Alu -9 303 142 23 0 0 0 chr9 3048468 3048491 -114814136 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 3049654 3049691 -114812936 + AT_rich Low_complexity Low_complexity 1 37 0 1865 147 17 10 chr9 3049696 3049989 -114812638 + AluSx SINE Alu 1 295 -17 289 294 85 7 chr9 3050393 3050546 -114812081 - L1ME LINE L1 -304 5817 5653 266 271 0 0 chr9 3050550 3050620 -114812007 - L1ME LINE L1 -499 5622 5553 473 373 12 12 chr9 3051068 3051237 -114811390 + MIR3 SINE MIR 31 199 -9 419 250 61 14 chr9 3051289 3051437 -114811190 - MER103 DNA DNA -1 165 11 264 254 0 0 chr9 3052065 3052124 -114810503 - MER4-int LTR ERV1 -5442 1156 1098 484 311 24 6 chr9 3052353 3052517 -114810110 + MIR SINE MIR 23 189 -73 330 345 98 13 chr9 3052708 3052943 -114809684 + L1MC/D LINE L1 5547 5801 -2007 824 130 0 61 chr9 3052943 3053074 -114809553 - AluJ SINE Alu -178 134 12 1560 254 96 49 chr9 3053586 3054504 -114808123 + HAL1b LINE L1 123 1083 -265 250 184 145 20 chr9 3054522 3054674 -114807953 + HAL1b LINE L1 1178 1348 0 543 289 55 42 chr9 3055405 3055785 -114806842 + HAL1 LINE L1 1283 1667 -840 2153 112 14 0 chr9 3055931 3056226 -114806401 - AluSx SINE Alu -13 299 1 281 357 31 0 chr9 3056897 3057026 -114805601 - MIR3 SINE MIR -13 195 63 261 0 0 0 chr9 3057355 3057384 -114805243 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 226 372 149 8 chr9 3057902 3058023 -114804604 + L2 LINE L2 3125 3262 -10 868 210 110 0 chr9 3058519 3058809 -114803818 + LTR37A LTR ERV1 105 426 0 207 0 0 0 chr9 3058896 3058919 -114803708 + (TG)n Simple_repeat Simple_repeat 2 24 0 628 284 48 8 chr9 3058919 3059169 -114803458 + MIR SINE MIR 1 260 -2 769 281 53 81 chr9 3059336 3059844 -114802783 + MLT1J LTR MaLR 1 494 -17 1933 149 0 7 chr9 3059948 3060244 -114802383 - AluJo SINE Alu -12 300 7 250 325 36 0 chr9 3060724 3060807 -114801820 - MIR SINE MIR -65 197 112 233 232 10 81 chr9 3062510 3062609 -114800018 - MIR3 SINE MIR -11 197 106 244 373 127 9 chr9 3063501 3063611 -114799016 - L2 LINE L2 -23 3249 3127 560 238 98 12 chr9 3063616 3063780 -114798847 - MIR SINE MIR 0 262 85 2295 178 26 2 chr9 3063781 3064235 -114798392 + MLT1C LTR MaLR 2 466 -1 205 422 0 0 chr9 3064235 3064318 -114798309 - MIR SINE MIR -172 90 8 1268 165 9 0 chr9 3064784 3065008 -114797619 - L1PA15 LINE L1 -13 6152 5927 2391 130 16 3 chr9 3065370 3065748 -114796879 + MLT1B LTR MaLR 4 386 -4 230 300 0 0 chr9 3066322 3066382 -114796245 + (TG)n Simple_repeat Simple_repeat 2 61 0 478 241 24 60 chr9 3067848 3068014 -114794613 + LTR45 LTR ERV1 366 525 0 412 319 8 0 chr9 3068684 3068803 -114793824 + L2 LINE L2 3187 3306 -7 259 292 177 0 chr9 3068865 3068961 -114793666 - L2 LINE L2 0 3313 3201 663 215 115 68 chr9 3068982 3069173 -114793454 - MER20 DNA MER1_type -19 200 1 1410 291 76 10 chr9 3069175 3069869 -114792758 - L2 LINE L2 -119 3194 2458 423 292 146 0 chr9 3069873 3070010 -114792617 - MIR SINE MIR -104 158 2 1871 253 144 16 chr9 3070138 3071049 -114791578 + Charlie7 DNA MER1_type 436 1462 -1150 7676 185 83 22 chr9 3071053 3072362 -114790265 + L1M4c LINE L1 19 1246 -5138 1358 183 147 0 chr9 3072362 3072614 -114790013 - AluJb SINE Alu -13 289 1 7676 185 83 22 chr9 3072614 3072648 -114789979 + L1M4c LINE L1 1246 1276 -5108 2078 138 0 0 chr9 3072648 3072977 -114789650 + AluSx SINE Alu 4 312 0 7676 185 83 22 chr9 3072977 3073428 -114789199 + L1M4c LINE L1 1276 1924 -4460 2044 152 0 0 chr9 3073430 3073732 -114788895 - AluSx SINE Alu -10 302 1 572 185 8 0 chr9 3073813 3073932 -114788695 - L1MA9 LINE L1 -4 6308 6189 225 206 0 32 chr9 3073934 3073997 -114788630 + L1M4c LINE L1 2041 2101 -4283 * 1539 236 29 28 chr9 3073986 3074638 -114787989 + L1M4c LINE L1 2835 3487 -2895 501 134 0 0 chr9 3074657 3074739 -114787888 + L1MB3 LINE L1 1386 1467 -4917 317 146 0 0 chr9 3074741 3074789 -114787838 - Alu SINE Alu -15 287 240 2056 147 55 30 chr9 3074801 3075305 -114787322 - MLT2A2 LTR ERVL -22 532 2 3503 219 39 28 chr9 3075308 3076344 -114786283 + L1MB3 LINE L1 3481 4527 -1855 1934 153 88 5 chr9 3076343 3076728 -114785899 + L1MB3 LINE L1 5561 5977 -442 * 893 189 91 103 chr9 3076728 3077086 -114785541 + MLT1A1 LTR MaLR 1 428 -4 2301 161 33 5 chr9 3077086 3077516 -114785111 + L1MB3 LINE L1 5969 6410 -9 2112 234 90 17 chr9 3077527 3078295 -114784332 + Charlie7 DNA MER1_type 1462 2285 -327 294 253 49 31 chr9 3078499 3078518 -114784109 - L1MA10 LINE L1 0 6334 6316 2212 202 102 40 chr9 3078518 3079192 -114783435 - L1ME2 LINE L1 -11 6153 5438 21 0 0 0 chr9 3079436 3079457 -114783170 + AT_rich Low_complexity Low_complexity 1 21 0 2779 185 42 24 chr9 3080461 3081088 -114781539 + LTR9B LTR ERV1 7 644 0 722 206 101 42 chr9 3081502 3081897 -114780730 - MLT1A1 LTR MaLR 0 365 24 219 269 164 0 chr9 3081920 3081987 -114780640 + MIR SINE MIR 76 153 -55 642 198 161 0 chr9 3082238 3082400 -114780227 + MER5A DNA MER1_type 2 189 0 625 285 34 34 chr9 3082868 3082996 -114779631 - MIR SINE MIR -34 228 98 2252 186 83 2 chr9 3082996 3083463 -114779164 + MLT1D LTR MaLR 1 505 0 625 285 34 34 chr9 3083463 3083541 -114779086 - MIR SINE MIR -163 99 22 919 298 75 11 chr9 3085065 3085437 -114777190 + LTR16A LTR ERVL 55 450 0 871 190 34 34 chr9 3085624 3085748 -114776879 + MER3 DNA MER1_type 5 131 -78 1790 177 23 7 chr9 3085748 3085917 -114776710 - AluSx SINE Alu -2 310 132 1689 139 4 4 chr9 3085917 3086162 -114776465 - AluSx SINE Alu -15 297 53 1790 177 23 7 chr9 3086162 3086297 -114776330 - AluSx SINE Alu -180 132 1 871 190 34 34 chr9 3086297 3086377 -114776250 + MER3 DNA MER1_type 130 209 0 1320 219 40 15 chr9 3087983 3088307 -114774320 + MER57A LTR ERV1 72 403 0 320 181 97 42 chr9 3088308 3088380 -114774247 + MIR SINE MIR 45 120 -142 881 70 0 0 chr9 3089268 3089383 -114773244 + L1PA5 LINE L1 6024 6138 -16 215 122 0 24 chr9 3089527 3089568 -114773059 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 458 304 0 30 chr9 3090734 3090902 -114771725 + GA-rich Low_complexity Low_complexity 1 163 0 3460 96 18 20 chr9 3090956 3091510 -114771117 + L1P LINE L1 1296 1848 -4298 2054 122 3 28 chr9 3092054 3092375 -114770252 - AluSq SINE Alu 0 313 1 335 307 92 33 chr9 3092557 3092710 -114769917 + L2 LINE L2 2988 3149 -164 22 0 0 0 chr9 3092896 3092918 -114769709 + AT_rich Low_complexity Low_complexity 1 22 0 5865 132 52 9 chr9 3093422 3094503 -114768124 + L1MC1 LINE L1 5188 6317 -16 2541 75 80 3 chr9 3094531 3094906 -114767721 - L1PA13 LINE L1 -5 6158 5755 2479 89 3 3 chr9 3094907 3095265 -114767362 - L1PA12 LINE L1 -329 5839 5482 809 111 0 0 chr9 3096617 3096725 -114765902 + AluSg/x SINE Alu 175 282 -30 345 216 0 0 chr9 3096933 3097007 -114765620 + L1MC4 LINE L1 7785 7858 -184 427 324 0 16 chr9 3097068 3097250 -114765377 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 247 0 0 chr9 3097304 3097377 -114765250 + L1MC4 LINE L1 7925 7997 -45 424 211 0 21 chr9 3097377 3097472 -114765155 - FAM SINE Alu -5 180 88 1195 280 75 20 chr9 3098018 3098732 -114763895 + L1ME3A LINE L1 5183 5934 -236 21 0 0 0 chr9 3099803 3099824 -114762803 + AT_rich Low_complexity Low_complexity 1 21 0 977 134 56 12 chr9 3099899 3100081 -114762546 - THE1B LTR MaLR -2 362 180 883 241 0 0 chr9 3100198 3100385 -114762242 - THE1B LTR MaLR -177 187 1 2402 66 0 38 chr9 3100497 3100814 -114761813 + AluY SINE Alu 1 305 -6 380 312 102 16 chr9 3101056 3101242 -114761385 + MIR SINE MIR 61 262 0 242 389 18 42 chr9 3101781 3101948 -114760679 - MIR SINE MIR -79 183 21 225 0 0 0 chr9 3102126 3102151 -114760476 + (TG)n Simple_repeat Simple_repeat 1 25 0 292 277 125 8 chr9 3103662 3103786 -114758841 - MIR SINE MIR -63 145 19 493 256 96 0 chr9 3104248 3104404 -114758223 + MLT1J2 LTR MaLR 280 450 0 313 336 112 52 chr9 3104423 3104709 -114757918 + L2 LINE L2 2967 3269 -3 263 247 108 32 chr9 3105075 3105168 -114757459 + L2 LINE L2 2874 2973 -341 1160 292 78 19 chr9 3105226 3105669 -114756958 + LTR33 LTR ERVL 1 477 -44 2744 106 39 14 chr9 3105669 3106047 -114756580 + MLT2A1 LTR ERVL 1 393 -51 308 102 0 17 chr9 3106047 3106106 -114756521 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2744 106 39 14 chr9 3106106 3106160 -114756467 + MLT2A1 LTR ERVL 393 444 0 1160 292 78 19 chr9 3106160 3106203 -114756424 + LTR33 LTR ERVL 477 516 -5 2509 0 0 0 chr9 3106318 3106586 -114756041 - AluYa5 SINE Alu -6 305 38 323 351 46 23 chr9 3106800 3106931 -114755696 + L2 LINE L2 3134 3267 -5 1821 163 15 18 chr9 3107581 3107918 -114754709 + MER2 DNA MER2_type 1 336 -9 284 302 147 0 chr9 3107942 3108071 -114754556 - MIR SINE MIR -5 257 110 2251 280 2 0 chr9 3108148 3108548 -114754079 - L1PA3 LINE L1 -3 6152 5752 225 262 131 0 chr9 3109523 3109584 -114753043 - L2 LINE L2 -19 3294 3226 520 260 172 21 chr9 3110158 3110443 -114752184 + MLT1L LTR MaLR 38 365 -250 272 383 104 0 chr9 3110577 3110778 -114751849 - L2 LINE L2 -663 2651 2430 252 59 0 0 chr9 3110893 3110927 -114751700 + (CTG)n Simple_repeat Simple_repeat 2 35 0 295 353 24 50 chr9 3111112 3111452 -114751175 + LTR16C LTR ERVL 159 489 -2 967 194 122 56 chr9 3111686 3112006 -114750621 - MER2 DNA MER2_type 0 344 4 1066 261 12 4 chr9 3112456 3112791 -114749836 + MLT1I LTR MaLR 13 388 -21 919 194 60 26 chr9 3113462 3113694 -114748933 + MLT1C LTR MaLR 11 250 -217 324 333 33 13 chr9 3113943 3114096 -114748531 + MIR SINE MIR 23 178 -84 387 153 0 0 chr9 3114105 3114177 -114748450 + LTR67 LTR ERVL 3 74 -483 502 308 136 40 chr9 3114232 3114606 -114748021 + LTR67 LTR ERVL 148 557 0 314 268 6 159 chr9 3115581 3115812 -114746815 - MIR SINE MIR -3 205 9 790 328 16 4 chr9 3115938 3116185 -114746442 + MIR SINE MIR 13 262 0 2226 114 0 7 chr9 3116534 3116840 -114745787 - AluSx SINE Alu -8 304 1 401 333 56 12 chr9 3116870 3117032 -114745595 - MIR3 SINE MIR -4 204 36 421 183 65 11 chr9 3117649 3117742 -114744885 + MER5A DNA MER1_type 9 106 -83 704 327 28 6 chr9 3119081 3119442 -114743185 + L1ME2 LINE L1 5452 5820 -301 1456 148 60 27 chr9 3120245 3120577 -114742050 - L1MA8 LINE L1 0 6291 5949 523 118 0 24 chr9 3121571 3121656 -114740971 - AluSc SINE Alu -226 83 1 3099 164 11 9 chr9 3121657 3122181 -114740446 + HUERS-P3 LTR ERV1 6198 6722 -2197 10382 184 29 39 chr9 3122181 3123335 -114739292 + HUERS-P3 LTR ERV1 6863 8028 -891 210 271 0 68 chr9 3123335 3123394 -114739233 + MER5A DNA MER1_type 1 55 -134 10382 184 29 39 chr9 3123394 3123411 -114739216 + HUERS-P3 LTR ERV1 8028 8044 -875 2250 114 0 7 chr9 3123411 3123719 -114738908 - AluSg SINE Alu -4 306 1 10382 184 29 39 chr9 3123719 3124567 -114738060 + HUERS-P3 LTR ERV1 8044 8919 0 2543 189 19 68 chr9 3124567 3125211 -114737416 + LTR9 LTR ERV1 1 612 0 1430 177 21 36 chr9 3125211 3125544 -114737083 - L1M4 LINE L1 -477 5707 5380 7146 46 2 0 chr9 3125644 3126999 -114735628 + L1PA5 LINE L1 4782 6138 -16 505 274 86 4 chr9 3127047 3127281 -114735346 + L1ME2 LINE L1 5879 6131 -33 665 200 18 12 chr9 3128725 3128765 -114733862 - L1MB1 LINE L1 -209 5959 5921 606 193 0 0 chr9 3128765 3128900 -114733727 - L1MB1 LINE L1 -1 6167 6033 665 200 18 12 chr9 3128900 3129029 -114733598 - L1MB1 LINE L1 -247 5921 5789 220 386 8 8 chr9 3129293 3129420 -114733207 + L2 LINE L2 2629 2755 -559 527 274 91 43 chr9 3129499 3129695 -114732932 + MIR SINE MIR 20 225 -37 209 194 0 0 chr9 3130165 3130201 -114732426 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 186 133 0 0 chr9 3130922 3130952 -114731675 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1010 251 64 6 chr9 3131379 3131721 -114730906 - L1MB1 LINE L1 -554 5616 5255 710 333 89 24 chr9 3131851 3132223 -114730404 + LTR16C LTR ERVL 90 485 -6 235 270 79 0 chr9 3133070 3133159 -114729468 + L2 LINE L2 3218 3313 0 1873 155 0 7 chr9 3133300 3133597 -114729030 - AluJb SINE Alu -17 295 1 272 333 0 0 chr9 3133794 3133881 -114728746 - L2 LINE L2 -4 3268 3182 260 303 40 30 chr9 3134025 3134124 -114728503 - L2 LINE L2 -11 3302 3203 497 248 272 5 chr9 3134208 3134410 -114728217 + MIR SINE MIR 7 262 0 1345 271 123 35 chr9 3135014 3136138 -114726489 + L1ME2 LINE L1 322 1538 -4677 922 246 73 39 chr9 3136290 3136787 -114725840 + L1ME2 LINE L1 1864 2343 -3872 297 51 0 0 chr9 3136787 3136826 -114725801 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 684 67 0 0 chr9 3136825 3136915 -114725712 + (TA)n Simple_repeat Simple_repeat 2 91 0 922 246 73 39 chr9 3136826 3137405 -114725222 + L1ME2 LINE L1 2343 2924 -3291 1620 244 55 32 chr9 3137417 3138069 -114724558 + L1ME2 LINE L1 3452 4118 -2097 * 1643 255 29 27 chr9 3138064 3138252 -114724375 + L1ME2 LINE L1 5259 5445 -788 2233 102 0 37 chr9 3138252 3138577 -114724050 + AluSp SINE Alu 1 313 0 2140 91 30 14 chr9 3138586 3138883 -114723744 + AluSc SINE Alu 6 307 -2 1643 255 29 27 chr9 3138883 3139401 -114723226 + L1ME2 LINE L1 5452 5955 -278 437 35 0 0 chr9 3139408 3139465 -114723162 - L1P LINE L1 -5916 230 174 2589 93 0 5 chr9 3139469 3139857 -114722770 + L1P LINE L1 674 1059 -5087 1429 176 87 31 chr9 3140383 3140764 -114721863 + LTR52 LTR ERVL 18 419 -2 259 257 76 29 chr9 3141203 3141308 -114721319 - MIR SINE MIR -94 168 59 349 259 108 76 chr9 3141654 3141839 -114720788 - MIR3 SINE MIR -10 198 8 623 228 14 100 chr9 3142006 3142287 -114720340 - L1MD2 LINE L1 -24 6335 6079 608 287 59 21 chr9 3142421 3142658 -114719969 + MIR SINE MIR 17 262 0 494 283 97 39 chr9 3142674 3142985 -114719642 - HAL1 LINE L1 -11 2496 2168 1306 266 55 82 chr9 3143182 3144174 -114718453 - HAL1 LINE L1 -803 1704 739 1437 239 45 19 chr9 3144186 3144648 -114717979 - MLT1E2 LTR MaLR 0 626 156 1290 181 4 49 chr9 3146449 3146715 -114715912 + AluJb SINE Alu 1 254 -58 358 236 55 0 chr9 3146884 3147011 -114715616 - L1ME4a LINE L1 0 6121 5988 1797 68 8 0 chr9 3147020 3147257 -114715370 - L1PA7 LINE L1 0 6154 5916 2177 106 6 13 chr9 3147273 3147585 -114715042 - AluSx SINE Alu -2 310 1 347 335 107 26 chr9 3147661 3148074 -114714553 - L1ME4a LINE L1 -331 5790 5317 1595 166 76 3 chr9 3148074 3148364 -114714263 - AluJb SINE Alu -1 311 1 347 335 107 26 chr9 3148364 3148433 -114714194 - L1ME4a LINE L1 -804 5317 5255 25 51 0 0 chr9 3148495 3148534 -114714093 + AT_rich Low_complexity Low_complexity 1 39 0 191 182 250 0 chr9 3148823 3148867 -114713760 - L2 LINE L2 -1 3271 3217 2390 95 0 7 chr9 3149524 3149829 -114712798 + AluSp SINE Alu 1 303 -10 211 260 87 39 chr9 3149894 3149998 -114712629 - MIR SINE MIR -56 206 98 1677 199 52 13 chr9 3150192 3150573 -114712054 + MER57A LTR ERV1 8 403 0 320 181 97 42 chr9 3150574 3150646 -114711981 + MIR SINE MIR 45 120 -142 198 0 0 0 chr9 3151052 3151074 -114711553 + (T)n Simple_repeat Simple_repeat 1 22 0 668 238 10 10 chr9 3151543 3151745 -114710882 + L1MDb LINE L1 1065 1266 -5143 879 287 75 41 chr9 3151950 3152442 -114710185 - MLT1H LTR MaLR -40 509 1 282 307 0 13 chr9 3152515 3152590 -114710037 - MIR SINE MIR -85 123 50 2637 182 22 55 chr9 3152902 3153480 -114709147 - L1MB5 LINE L1 -10 6164 5606 229 388 10 0 chr9 3153763 3153866 -114708761 - MIR SINE MIR -67 141 38 797 159 28 14 chr9 3153985 3154130 -114708497 + FRAM SINE Alu 19 165 -11 610 251 94 30 chr9 3154352 3154555 -114708072 - MIR SINE MIR -2 260 45 322 157 0 0 chr9 3154548 3154599 -114708028 - MER5A DNA MER1_type -138 51 1 * 427 322 6 23 chr9 3155979 3156153 -114706474 + MER5B DNA MER1_type 2 172 -6 1409 202 112 30 chr9 3156277 3156563 -114706064 - MSTD LTR MaLR 0 396 72 2108 131 3 7 chr9 3156563 3156868 -114705759 - AluSq SINE Alu -9 304 1 1409 202 112 30 chr9 3156868 3156947 -114705680 - MSTD LTR MaLR -324 72 1 316 298 106 13 chr9 3157650 3157801 -114704826 - L1ME4a LINE L1 -202 5919 5755 239 294 228 0 chr9 3157805 3157897 -114704730 + MER5A DNA MER1_type 69 181 -8 2213 130 0 3 chr9 3158053 3158361 -114704266 - AluSx SINE Alu -5 307 1 306 222 193 19 chr9 3158408 3158615 -114704012 - L1ME4a LINE L1 -36 6085 5843 184 365 40 0 chr9 3158649 3158723 -114703904 - L3 LINE CR1 -1043 534 458 351 404 13 30 chr9 3158794 3159024 -114703603 - L3 LINE CR1 -1309 268 43 613 317 69 29 chr9 3159048 3159395 -114703232 - MARNA DNA Mariner -201 385 25 1462 219 38 27 chr9 3159403 3159769 -114702858 - MLT1A2 LTR MaLR -4 370 1 216 0 0 0 chr9 3159960 3159984 -114702643 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 3160076 3160099 -114702528 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 3160311 3160335 -114702292 + (T)n Simple_repeat Simple_repeat 1 24 0 1924 68 0 16 chr9 3161482 3161730 -114700897 - AluY SINE Alu -5 306 63 247 338 58 32 chr9 3161865 3162019 -114700608 + L2 LINE L2 3149 3306 -7 549 245 23 14 chr9 3162049 3162323 -114700304 + CT-rich Low_complexity Low_complexity 1 276 0 573 315 91 4 chr9 3163862 3164103 -114698524 - MLT1K LTR MaLR -172 416 155 434 292 8 8 chr9 3164673 3164803 -114697824 - MER94 DNA DNA -3 131 2 23 68 0 0 chr9 3165119 3165163 -114697464 + AT_rich Low_complexity Low_complexity 1 44 0 413 270 50 87 chr9 3166320 3166561 -114696066 + MER102a DNA MER1_type 92 323 -7 9759 25 1 0 chr9 3167418 3168580 -114694047 - L1P LINE L1 -814 5332 4170 277 403 8 0 chr9 3168914 3169043 -114693584 - MER89-int LTR ERV1 -338 6463 6334 2280 217 149 23 chr9 3169355 3170686 -114691941 - L1ME2 LINE L1 -125 6108 4605 548 284 34 0 chr9 3170715 3170919 -114691708 - L1ME2 LINE L1 -2046 4169 3959 1867 264 49 3 chr9 3170954 3171693 -114690934 - L1ME2 LINE L1 -2555 3660 2888 428 334 32 83 chr9 3171679 3172362 -114690265 - L1ME2 LINE L1 -5582 814 167 * 1608 255 31 16 chr9 3173057 3173508 -114689119 - LTR40c LTR ERVL -7 458 1 196 336 91 51 chr9 3175191 3175444 -114687183 - L2 LINE L2 -339 2975 2713 377 229 28 28 chr9 3175496 3175605 -114687022 - MIR SINE MIR -70 192 84 2326 234 41 53 chr9 3175838 3176669 -114685958 - L1MC4 LINE L1 -7 8035 7215 2028 221 94 52 chr9 3176648 3177422 -114685205 - L1M4 LINE L1 -1775 4371 3565 * 2019 244 61 23 chr9 3177452 3178191 -114684436 - L1M4 LINE L1 -2875 3271 2505 294 151 0 0 chr9 3178473 3178526 -114684101 + L1MC5 LINE L1 7724 7776 -185 734 202 12 40 chr9 3179089 3179262 -114683365 + AluJo SINE Alu 1 168 -144 368 103 116 0 chr9 3179263 3179684 -114682943 + (TA)n Simple_repeat Simple_repeat 1 469 0 1779 156 3 33 chr9 3179965 3180266 -114682361 - AluJb SINE Alu -20 292 1 1801 181 79 23 chr9 3180295 3180825 -114681802 - MLT2A2 LTR ERVL 0 554 1 202 233 0 0 chr9 3180830 3180873 -114681754 + MIR SINE MIR 196 238 -24 237 65 0 0 chr9 3180914 3180945 -114681682 + (TCC)n Simple_repeat Simple_repeat 3 33 0 321 343 56 0 chr9 3181019 3181127 -114681500 - MER91C DNA MER1_type 0 140 27 868 107 0 0 chr9 3182591 3182713 -114679914 - FRAM SINE Alu -1 175 54 351 320 109 6 chr9 3182721 3182896 -114679731 - MIR SINE MIR -62 200 8 1769 184 27 15 chr9 3182911 3183248 -114679379 + MER58B DNA MER1_type 1 341 0 299 378 6 47 chr9 3184126 3184298 -114678329 + MIR3 SINE MIR 1 145 -63 935 274 87 21 chr9 3184603 3184983 -114677644 - MLT1I LTR MaLR -3 406 2 457 268 87 100 chr9 3185168 3185698 -114676929 + L1ME4a LINE L1 5485 6007 -114 181 240 40 0 chr9 3185863 3185913 -114676714 + L2 LINE L2 3261 3312 -1 512 176 84 59 chr9 3186460 3186579 -114676048 + MER91B DNA MER1_type 1 122 -68 310 245 20 69 chr9 3186603 3186705 -114675922 + MER91B DNA MER1_type 93 189 -1 262 239 30 0 chr9 3186754 3186821 -114675806 - Charlie8 DNA MER1_type -1 2416 2348 216 272 0 99 chr9 3187187 3187268 -114675359 + L2 LINE L2 3239 3311 -2 1060 168 10 15 chr9 3187298 3187500 -114675127 + MER41B LTR ERV1 349 549 -86 210 37 0 0 chr9 3187785 3187812 -114674815 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 337 340 51 9 chr9 3188269 3188484 -114674143 + L1P LINE L1 3509 3732 -2414 201 412 0 8 chr9 3188487 3188606 -114674021 + MIR SINE MIR 41 158 -104 779 216 59 54 chr9 3188668 3188835 -114673792 - MIR SINE MIR -23 239 69 1818 189 55 3 chr9 3188835 3189178 -114673449 + MLT1A1 LTR MaLR 1 361 -4 779 216 59 54 chr9 3189178 3189232 -114673395 - MIR SINE MIR -193 69 17 326 298 127 72 chr9 3189259 3189572 -114673055 + L1ME LINE L1 3862 4156 -1990 2136 174 61 2 chr9 3189572 3189980 -114672647 - MSTB1 LTR MaLR 0 432 1 326 298 127 72 chr9 3189980 3190281 -114672346 + L1ME LINE L1 4156 4510 -1636 588 283 60 57 chr9 3190802 3191116 -114671511 + MLT1J LTR MaLR 197 511 0 5092 73 16 0 chr9 3191489 3192176 -114670451 - L1PA10 LINE L1 -186 5982 5285 479 304 68 34 chr9 3192194 3192520 -114670107 + L1ME LINE L1 5484 5820 -301 2510 152 8 46 chr9 3193001 3193482 -114669145 + L1MA10 LINE L1 5740 6202 -132 303 339 99 9 chr9 3193697 3193918 -114668709 + MIR SINE MIR 6 246 -16 246 207 37 37 chr9 3194002 3194084 -114668543 - MER103 DNA DNA -82 84 3 1732 191 31 6 chr9 3194704 3195060 -114667567 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr9 3195071 3195095 -114667532 + AT_rich Low_complexity Low_complexity 1 24 0 547 326 82 10 chr9 3195705 3195901 -114666726 - MIR SINE MIR -33 229 20 1258 113 21 0 chr9 3196778 3196972 -114665655 - L1PB3 LINE L1 0 6154 5957 2869 9 0 0 chr9 3197356 3197671 -114664956 + AluYb8 SINE Alu 1 315 -3 426 253 7 20 chr9 3197683 3197829 -114664798 - L1MC4a LINE L1 -1913 5895 5752 433 280 19 32 chr9 3197902 3198180 -114664447 - L1MEd LINE L1 -4862 1257 1069 455 297 57 29 chr9 3198275 3198521 -114664106 + L1MEd LINE L1 971 1223 -4896 12450 205 41 13 chr9 3198970 3199010 -114663617 - L1MB1 LINE L1 -209 6195 6158 624 193 0 0 chr9 3199010 3199145 -114663482 - L1MB1 LINE L1 -1 6167 6033 12450 205 41 13 chr9 3199145 3202991 -114659636 - L1MB1 LINE L1 -246 6158 2190 197 284 116 0 chr9 3203642 3203731 -114658896 + MIR SINE MIR 52 148 -62 21 36 0 0 chr9 3204739 3204767 -114657860 + AT_rich Low_complexity Low_complexity 1 28 0 2710 61 3 0 chr9 3204810 3205154 -114657473 - L1PA7 LINE L1 0 6154 5810 1932 58 0 0 chr9 3205154 3205396 -114657231 + L1PA7 LINE L1 5572 5813 -341 336 306 27 20 chr9 3206695 3206842 -114655785 + L1ME4a LINE L1 5965 6112 -9 185 0 0 39 chr9 3207169 3207195 -114655432 + (TTA)n Simple_repeat Simple_repeat 3 27 0 517 324 117 28 chr9 3207541 3208001 -114654626 - L1M4 LINE L1 -1586 4560 4060 23 54 0 0 chr9 3208665 3208702 -114653925 + AT_rich Low_complexity Low_complexity 1 37 0 340 238 105 70 chr9 3209640 3209709 -114652918 + MIR SINE MIR 76 141 -121 339 25 0 0 chr9 3209709 3209749 -114652878 + (ATG)n Simple_repeat Simple_repeat 3 42 0 340 238 105 70 chr9 3209749 3209822 -114652805 + MIR SINE MIR 141 223 -39 284 315 15 54 chr9 3210734 3210864 -114651763 - MIR3 SINE MIR -11 197 73 503 130 0 0 chr9 3210999 3211076 -114651551 - MADE1 DNA Mariner -3 77 1 561 282 17 35 chr9 3212004 3212178 -114650449 - MER20B DNA MER1_type -609 174 4 621 293 25 20 chr9 3212996 3213194 -114649433 - MIR SINE MIR -56 206 8 219 262 33 16 chr9 3213326 3213387 -114649240 - MIR SINE MIR -115 147 86 29 0 0 0 chr9 3213468 3213497 -114649130 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 3213667 3213687 -114648940 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 345 140 0 0 chr9 3214837 3214894 -114647733 + (CA)n Simple_repeat Simple_repeat 2 58 0 716 239 177 5 chr9 3214928 3215137 -114647490 - MIR SINE MIR 0 262 18 337 300 134 89 chr9 3215134 3215603 -114647024 + L2 LINE L2 2770 3255 -17 * 336 281 22 11 chr9 3216857 3216946 -114645681 + MER91A DNA MER1_type 2 91 -105 2102 177 28 23 chr9 3217646 3219231 -114643396 + L1MC3 LINE L1 4731 7765 -20 1957 119 0 41 chr9 3219231 3219552 -114643075 - AluSx SINE Alu 0 309 1 2102 177 28 23 chr9 3219552 3219574 -114643053 + L1MC3 LINE L1 7765 7785 0 525 267 99 15 chr9 3219776 3220038 -114642589 + HAL1 LINE L1 1398 1681 -826 35 0 0 0 chr9 3220188 3220223 -114642404 + AT_rich Low_complexity Low_complexity 1 35 0 1325 178 114 11 chr9 3221831 3222112 -114640515 + AluSx SINE Alu 2 311 -1 1003 289 16 9 chr9 3223568 3223890 -114638737 + L1MCc LINE L1 130 453 -5970 388 246 48 60 chr9 3224372 3224539 -114638088 + L1MCc LINE L1 795 959 -5464 1060 279 73 26 chr9 3224603 3225091 -114637536 + L1MCc LINE L1 1339 1803 -5319 2172 86 58 0 chr9 3225091 3225382 -114637245 + AluSg SINE Alu 1 308 -2 1060 279 73 26 chr9 3225382 3225838 -114636789 + L1MCc LINE L1 1803 2518 -4604 28895 102 13 3 chr9 3225888 3231021 -114631606 - L1PA7 LINE L1 0 6469 1288 4747 17 0 0 chr9 3231025 3231567 -114631060 - L1PA2 LINE L1 0 6155 5614 4669 34 2 0 chr9 3231567 3232134 -114630493 + L1P LINE L1 4686 5253 -893 * 9008 98 32 5 chr9 3232127 3233391 -114629236 - L1PA7 LINE L1 -5161 1300 2 1819 169 0 19 chr9 3233573 3233881 -114628746 - AluJo SINE Alu -10 302 1 2893 236 64 26 chr9 3233925 3234795 -114627832 + L1MEc LINE L1 40 942 -5454 701 318 32 53 chr9 3234830 3235208 -114627419 - MLT1L LTR MaLR -123 492 123 2533 239 28 11 chr9 3235307 3235850 -114626777 + REP3 LTR ERV 11 562 0 644 264 70 0 chr9 3235977 3236178 -114626449 + MER58C DNA MER1_type 1 215 0 231 361 139 0 chr9 3236248 3236356 -114626271 - MIR SINE MIR -112 150 28 252 59 0 0 chr9 3236527 3236561 -114626066 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 211 245 75 0 chr9 3236791 3236844 -114625783 - L2 LINE L2 -4 3268 3212 320 268 145 41 chr9 3236980 3237249 -114625378 - MER102a DNA MER1_type 0 330 34 729 117 0 83 chr9 3237389 3237534 -114625093 - L1MD1 LINE L1 -14 6228 6096 213 227 0 0 chr9 3237672 3237716 -114624911 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 606 228 42 5 chr9 3237727 3237916 -114624711 - L1MD1 LINE L1 -1985 5823 5628 874 298 80 35 chr9 3237931 3238723 -114623904 - L1MD1 LINE L1 -748 5398 4686 183 80 0 0 chr9 3238723 3238748 -114623879 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 874 298 80 35 chr9 3238748 3239140 -114623487 - L1MD1 LINE L1 -1460 4686 4313 3577 126 24 0 chr9 3239152 3239730 -114622897 - L1MA5A LINE L1 -3 6294 5703 1522 196 37 0 chr9 3239730 3240021 -114622606 + L1PB4 LINE L1 5837 6143 -13 2967 149 18 9 chr9 3240037 3240592 -114622035 - L1MA5A LINE L1 -587 5710 5144 4076 129 25 71 chr9 3240592 3241414 -114621213 - LTR1 LTR ERV1 0 785 1 2967 149 18 9 chr9 3241414 3241789 -114620838 - L1MA5A LINE L1 -1153 5144 4774 327 297 25 0 chr9 3241942 3242060 -114620567 - L1MD1 LINE L1 -1987 4159 4039 1785 189 88 43 chr9 3242482 3242777 -114619850 - Charlie4a DNA MER1_type -1453 508 183 3827 14 0 0 chr9 3242777 3243216 -114619411 + L1PA2 LINE L1 5717 6155 0 1785 189 88 43 chr9 3243216 3243386 -114619241 - Charlie4a DNA MER1_type -1778 183 22 1769 163 3 3 chr9 3244605 3244930 -114617697 - AluSx SINE Alu 0 325 1 1068 202 79 128 chr9 3245326 3245394 -114617233 - MLT1D LTR MaLR -1 504 434 2354 104 0 0 chr9 3245394 3245701 -114616926 + AluSg SINE Alu 3 309 -1 1068 202 79 128 chr9 3245701 3246162 -114616465 - MLT1D LTR MaLR -71 434 1 2977 278 109 28 chr9 3247084 3249198 -114613429 - L1MC4a LINE L1 -758 5388 3850 311 88 0 18 chr9 3249198 3249255 -114613372 + (TA)n Simple_repeat Simple_repeat 1 56 0 2977 278 109 28 chr9 3249255 3250104 -114612523 - L1MC4a LINE L1 -2296 3850 3071 399 21 0 0 chr9 3250328 3250376 -114612251 + (CA)n Simple_repeat Simple_repeat 2 49 0 267 293 75 43 chr9 3250442 3250630 -114611997 - HAL1b LINE L1 -929 419 226 26 30 0 0 chr9 3250753 3250786 -114611841 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr9 3251270 3251300 -114611327 + (TTG)n Simple_repeat Simple_repeat 2 31 0 237 385 54 0 chr9 3253572 3253702 -114608925 + MIR3 SINE MIR 2 138 -70 194 276 163 0 chr9 3253964 3254062 -114608565 + MIR SINE MIR 8 121 -141 307 179 0 24 chr9 3254468 3254552 -114608075 + CT-rich Low_complexity Low_complexity 4 85 0 468 231 23 62 chr9 3255162 3255215 -114607412 + L2 LINE L2 3189 3242 -71 1378 250 82 52 chr9 3255215 3255739 -114606888 + MLT1F LTR MaLR 3 542 0 468 231 23 62 chr9 3255739 3255815 -114606812 + L2 LINE L2 3242 3313 0 23 0 0 0 chr9 3256378 3256401 -114606226 + AT_rich Low_complexity Low_complexity 1 23 0 243 266 78 101 chr9 3256417 3256635 -114605992 - L2 LINE L2 -174 3139 2927 345 24 0 0 chr9 3256713 3256755 -114605872 + (CA)n Simple_repeat Simple_repeat 1 42 0 224 228 0 0 chr9 3256923 3256980 -114605647 + T-rich Low_complexity Low_complexity 1 57 0 290 293 81 10 chr9 3256982 3257081 -114605546 - MIR SINE MIR -87 175 70 1123 176 27 5 chr9 3258037 3258259 -114604368 + L1MA9 LINE L1 6049 6275 -37 2128 99 3 11 chr9 3258574 3258885 -114603742 - AluSq SINE Alu 0 311 3 304 232 141 40 chr9 3259524 3259623 -114603004 + MER20B DNA MER1_type 70 178 -605 641 190 25 0 chr9 3259925 3260046 -114602581 - MLT2D LTR ERVL -274 140 17 882 220 70 0 chr9 3260073 3260273 -114602354 + MLT1H1 LTR MaLR 342 555 0 966 305 90 11 chr9 3260284 3260717 -114601910 + L2 LINE L2 2842 3308 -5 3258 151 36 31 chr9 3261368 3261923 -114600704 + MER74A LTR ERVL 1 558 0 304 281 12 0 chr9 3262047 3262129 -114600498 - L2 LINE L2 -4 3268 3186 1583 213 0 3 chr9 3262511 3262798 -114599829 + AluJo SINE Alu 1 286 -26 659 315 84 4 chr9 3262802 3263040 -114599587 - MIR SINE MIR 0 262 6 339 213 0 50 chr9 3264015 3264095 -114598532 - L2 LINE L2 -5 3308 3233 223 311 25 8 chr9 3265011 3265130 -114597497 + (CACG)n Simple_repeat Simple_repeat 1 121 0 425 193 211 18 chr9 3266833 3266947 -114595680 - MER82 DNA MER2_type -504 149 14 1140 244 136 40 chr9 3267474 3267924 -114594703 - MLT1D LTR MaLR 0 505 13 2245 109 0 10 chr9 3268220 3268532 -114594095 - AluY SINE Alu 0 311 3 249 146 0 0 chr9 3268599 3268647 -114593980 + (GA)n Simple_repeat Simple_repeat 1 48 0 509 254 204 33 chr9 3268678 3268953 -114593674 + Charlie2 DNA MER1_type 1 322 -2540 611 199 121 0 chr9 3268960 3269101 -114593526 + Charlie2 DNA MER1_type 1858 2015 -847 743 244 120 14 chr9 3269188 3269606 -114593021 + Charlie2 DNA MER1_type 2334 2795 -67 2244 116 6 30 chr9 3269633 3269994 -114592633 + MER50 LTR ERV1 1 352 -382 518 264 156 64 chr9 3270006 3270332 -114592295 - LTR18A LTR ERVL -1 356 1 1840 143 39 34 chr9 3270332 3270689 -114591938 + MER50 LTR ERV1 347 705 -29 749 233 25 6 chr9 3272645 3272804 -114589823 - MER5A DNA MER1_type -3 186 25 1450 172 31 151 chr9 3272934 3273359 -114589268 + MLT1A2 LTR MaLR 1 374 0 185 359 39 19 chr9 3273626 3273729 -114588898 + MIR SINE MIR 104 208 -54 321 301 141 47 chr9 3273736 3273992 -114588635 + L2 LINE L2 3032 3311 -2 2056 107 0 14 chr9 3274313 3274603 -114588024 + AluSc SINE Alu 1 286 -23 243 217 36 48 chr9 3275453 3275536 -114587091 + MIR SINE MIR 104 185 -77 240 231 19 0 chr9 3276270 3276322 -114586305 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 253 298 118 8 chr9 3276327 3276554 -114586073 + L1MC4a LINE L1 5389 5640 -522 505 195 190 36 chr9 3277059 3277254 -114585373 + L1MC4a LINE L1 5674 5898 -1910 386 171 0 85 chr9 3277434 3277516 -114585111 - MER5B DNA MER1_type 0 178 104 249 290 176 51 chr9 3277725 3277901 -114584726 - MIR SINE MIR -45 217 20 337 261 76 8 chr9 3278839 3278958 -114583669 - L1ME4a LINE L1 -53 6068 5942 2585 36 3 7 chr9 3278963 3279268 -114583359 + AluY SINE Alu 1 304 -7 181 292 77 15 chr9 3279638 3279703 -114582924 - L3 LINE CR1 -1297 280 212 756 278 106 16 chr9 3280030 3280350 -114582277 - L2 LINE L2 -7 3306 2958 1504 215 7 7 chr9 3280575 3280863 -114581764 + AluJo SINE Alu 3 290 -22 264 30 0 0 chr9 3281036 3281069 -114581558 + (TG)n Simple_repeat Simple_repeat 2 34 0 715 236 0 8 chr9 3281268 3281395 -114581232 + FLAM_A SINE Alu 3 128 -5 2264 134 85 15 chr9 3283101 3283655 -114578972 - MER39 LTR ERV1 0 707 32 398 284 113 0 chr9 3283701 3283842 -114578785 - MIR SINE MIR -48 214 58 286 214 14 14 chr9 3284153 3284223 -114578404 + MIR SINE MIR 129 198 -64 544 276 46 46 chr9 3285522 3285565 -114577062 - MIR SINE MIR -64 198 156 1541 171 100 10 chr9 3285565 3285875 -114576752 - MER44D DNA MER2_type 0 609 2 544 276 46 46 chr9 3285875 3286027 -114576600 - MIR SINE MIR -105 157 3 211 182 0 0 chr9 3286075 3286108 -114576519 + polypurine Low_complexity Low_complexity 4 36 0 242 262 56 19 chr9 3286477 3286584 -114576043 + L1ME LINE L1 5314 5424 -2384 1307 211 57 80 chr9 3286588 3286836 -114575791 - MLT1C LTR MaLR -5 462 229 378 0 0 0 chr9 3286836 3286878 -114575749 + (TG)n Simple_repeat Simple_repeat 2 43 0 1307 211 57 80 chr9 3286878 3287102 -114575525 - MLT1C LTR MaLR -238 229 1 2313 118 0 0 chr9 3287375 3287680 -114574947 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr9 3287870 3287891 -114574736 + AT_rich Low_complexity Low_complexity 1 21 0 1942 167 139 54 chr9 3288183 3288411 -114574216 + MER39 LTR ERV1 4 211 -496 2281 169 39 10 chr9 3288411 3288796 -114573831 + MSTD LTR MaLR 1 396 0 1942 167 139 54 chr9 3288796 3289183 -114573444 + MER39 LTR ERV1 211 707 0 829 288 99 20 chr9 3290349 3290703 -114571924 - L1ME3A LINE L1 -60 6110 5729 246 291 55 18 chr9 3291167 3291277 -114571350 + L1ME LINE L1 5532 5645 -476 243 374 61 8 chr9 3291371 3291502 -114571125 - L2 LINE L2 -1 3271 3134 1516 185 10 17 chr9 3291584 3291876 -114570751 - AluJo SINE Alu -18 294 5 368 40 20 0 chr9 3291879 3291929 -114570698 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 524 117 0 0 chr9 3292029 3292106 -114570521 - L1M4 LINE L1 -863 5283 5207 1527 276 29 40 chr9 3292106 3292624 -114570003 - LTR40a LTR ERVL 0 519 8 371 242 32 24 chr9 3292634 3292758 -114569869 - L1ME3A LINE L1 -940 5206 5082 2730 192 49 48 chr9 3292762 3292780 -114569847 - L1ME3A LINE L1 -1022 5124 5108 2359 96 3 0 chr9 3292780 3293081 -114569546 - AluSp SINE Alu -11 302 1 2730 192 49 48 chr9 3293081 3293797 -114568830 - L1ME3A LINE L1 -1038 5108 4389 317 194 216 37 chr9 3293799 3293933 -114568694 - L1ME3A LINE L1 -3851 2295 2138 2061 128 7 3 chr9 3294415 3294720 -114567907 - AluSx SINE Alu -6 306 1 3985 129 48 12 chr9 3296028 3296503 -114566124 + L1MA6 LINE L1 5633 6138 -162 2631 168 12 16 chr9 3296503 3296931 -114565696 + MSTB LTR MaLR 1 426 0 3985 129 48 12 chr9 3296931 3297100 -114565527 + L1MA6 LINE L1 6138 6300 0 346 220 119 90 chr9 3297185 3297362 -114565265 - Charlie8 DNA MER1_type -2164 253 72 2259 99 3 0 chr9 3297512 3297806 -114564821 + AluSx SINE Alu 1 295 -17 324 284 10 49 chr9 3298433 3298535 -114564092 - MIR SINE MIR -161 101 4 244 322 8 50 chr9 3298567 3298688 -114563939 - MIR SINE MIR -63 145 30 986 291 76 46 chr9 3298791 3299738 -114562889 + MERVL LTR ERVL 4156 5209 -555 272 241 76 0 chr9 3300001 3300080 -114562547 + LTR33 LTR ERVL 419 503 -18 2193 113 10 0 chr9 3301208 3301510 -114561117 - AluSg SINE Alu -4 306 2 333 0 0 0 chr9 3301650 3301687 -114560940 + (TA)n Simple_repeat Simple_repeat 2 38 0 448 195 98 32 chr9 3301709 3301832 -114560795 + L1ME1 LINE L1 6036 6166 0 27 0 0 0 chr9 3302405 3302432 -114560195 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr9 3303384 3303407 -114559220 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 3309780 3309806 -114552821 + AT_rich Low_complexity Low_complexity 1 26 0 480 273 101 38 chr9 3313789 3313998 -114548629 + MARNA DNA Mariner 11 232 -354 509 296 94 31 chr9 3314072 3314295 -114548332 + MARNA DNA Mariner 328 564 -22 316 122 0 0 chr9 3314307 3314356 -114548271 - MADE1 DNA Mariner -31 49 1 298 241 0 0 chr9 3315347 3315405 -114547222 - L2 LINE L2 0 3313 3256 1696 104 120 12 chr9 3315724 3315978 -114546649 + AluSg SINE Alu 1 283 -23 351 65 0 0 chr9 3315978 3316024 -114546603 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 468 321 92 22 chr9 3316276 3316547 -114546080 + L2 LINE L2 3024 3313 0 272 186 10 29 chr9 3316714 3316816 -114545811 + GA-rich Low_complexity Low_complexity 1 100 0 263 233 0 17 chr9 3317749 3317809 -114544818 + MIR SINE MIR 203 261 -1 811 238 23 0 chr9 3318126 3318298 -114544329 - MER58A DNA MER1_type -1 223 48 1762 152 11 11 chr9 3318299 3318610 -114544017 + AluJb SINE Alu 1 311 0 330 261 0 0 chr9 3318639 3318704 -114543923 - MER58A DNA MER1_type -42 65 1 1642 190 78 88 chr9 3319397 3319896 -114542731 - MLT1D LTR MaLR -11 494 1 385 322 38 43 chr9 3321535 3321746 -114540881 - MIR SINE MIR -6 256 47 234 143 0 24 chr9 3321781 3321823 -114540804 + MIR SINE MIR 34 74 -188 814 96 0 0 chr9 3321829 3321933 -114540694 + AluJb SINE Alu 197 300 -12 195 303 210 8 chr9 3321934 3322053 -114540574 + MIR SINE MIR 82 224 -38 1899 71 8 38 chr9 3322691 3322957 -114539670 + AluSp SINE Alu 44 301 -12 1680 258 131 28 chr9 3323627 3324250 -114538377 + MER115 DNA AcHobo 5 4029 -2 379 342 114 5 chr9 3326044 3326237 -114536390 + MIR SINE MIR 32 245 -17 27 81 0 0 chr9 3326845 3326907 -114535720 + AT_rich Low_complexity Low_complexity 1 62 0 39 22 0 0 chr9 3327191 3327237 -114535390 + AT_rich Low_complexity Low_complexity 1 46 0 743 254 43 70 chr9 3327805 3327932 -114534695 + MIR SINE MIR 8 126 -136 2286 98 0 13 chr9 3327932 3328248 -114534379 - AluSx SINE Alu 0 312 1 743 254 43 70 chr9 3328248 3328376 -114534251 + MIR SINE MIR 126 256 -6 583 270 41 130 chr9 3328502 3328894 -114533733 + L2 LINE L2 2914 3270 -2 312 327 36 18 chr9 3328902 3329012 -114533615 - MIR SINE MIR -67 141 30 381 316 85 32 chr9 3329133 3329470 -114533157 - L2 LINE L2 -225 3047 2682 248 314 25 17 chr9 3329488 3329606 -114533021 - L2 LINE L2 -797 2517 2399 641 239 97 85 chr9 3331284 3331531 -114531096 + MIR SINE MIR 12 261 -1 23 68 0 0 chr9 3332826 3332870 -114529757 + AT_rich Low_complexity Low_complexity 1 44 0 225 65 0 0 chr9 3332971 3333002 -114529625 + (TG)n Simple_repeat Simple_repeat 2 32 0 188 353 77 47 chr9 3333267 3333437 -114529190 + MIR SINE MIR 32 206 -56 24 0 0 0 chr9 3333881 3333905 -114528722 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr9 3334250 3334282 -114528345 + AT_rich Low_complexity Low_complexity 1 32 0 644 265 127 38 chr9 3334289 3334778 -114527849 + L1ME4a LINE L1 5361 5894 -227 508 235 23 65 chr9 3334932 3335149 -114527478 + L1ME4a LINE L1 5676 5883 -238 1421 173 57 14 chr9 3335294 3335577 -114527050 - AluJo SINE Alu -17 295 1 24 0 0 0 chr9 3335618 3335642 -114526985 + AT_rich Low_complexity Low_complexity 1 24 0 2095 79 4 0 chr9 3335782 3336049 -114526578 - AluSp SINE Alu -4 309 42 917 309 91 9 chr9 3336162 3336682 -114525945 - L2 LINE L2 -3 3310 2738 1212 106 0 0 chr9 3338484 3338645 -114523982 - AluY SINE Alu -16 295 135 210 73 0 98 chr9 3339844 3339885 -114522742 + MER5B DNA MER1_type 25 61 -117 2296 74 0 13 chr9 3339914 3340212 -114522415 - AluY SINE Alu -17 294 1 229 337 10 10 chr9 3340230 3340331 -114522296 - MER5B DNA MER1_type -72 106 6 846 260 0 6 chr9 3340371 3340544 -114522083 - MER5A DNA MER1_type -16 173 2 213 336 136 9 chr9 3342015 3342125 -114520502 + MIR3 SINE MIR 31 154 -54 250 296 178 46 chr9 3342342 3342494 -114520133 + L2 LINE L2 2247 2418 -896 286 205 47 24 chr9 3342712 3342839 -114519788 + (TA)n Simple_repeat Simple_repeat 2 131 0 321 272 73 32 chr9 3342842 3343088 -114519539 - L1ME4a LINE L1 -161 5960 5705 201 171 0 0 chr9 3344382 3344417 -114518210 + (TA)n Simple_repeat Simple_repeat 2 36 0 256 191 43 0 chr9 3344778 3344872 -114517755 + (TA)n Simple_repeat Simple_repeat 2 99 0 4580 189 18 9 chr9 3345062 3346137 -114516490 - L1MB8 LINE L1 0 6178 5102 379 303 45 30 chr9 3346504 3346636 -114515991 - MIR SINE MIR -128 134 1 1204 282 80 16 chr9 3347629 3348115 -114514512 + LTR33 LTR ERVL 1 517 -4 26 30 0 0 chr9 3348220 3348253 -114514374 + AT_rich Low_complexity Low_complexity 1 33 0 412 289 0 0 chr9 3348461 3348565 -114514062 - MIR SINE MIR -11 251 148 256 196 0 0 chr9 3348979 3349030 -114513597 + MER3 DNA MER1_type 1 51 -158 * 803 237 41 0 chr9 3349027 3349221 -114513406 + MER3 DNA MER1_type 7 208 -1 22 35 0 0 chr9 3351880 3351909 -114510718 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 3352241 3352262 -114510365 + AT_rich Low_complexity Low_complexity 1 21 0 767 57 33 8 chr9 3353992 3354114 -114508513 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 593 193 18 18 chr9 3355359 3355525 -114507102 + CT-rich Low_complexity Low_complexity 3 168 0 2277 98 0 3 chr9 3357528 3357825 -114504802 + AluSx SINE Alu 5 300 -12 249 167 0 0 chr9 3358780 3358834 -114503793 + (TA)n Simple_repeat Simple_repeat 2 55 0 587 285 54 51 chr9 3358853 3359204 -114503423 - L1MC4a LINE L1 -157 5964 5610 210 150 0 0 chr9 3360596 3360636 -114501991 + (CA)n Simple_repeat Simple_repeat 1 40 0 30 59 0 0 chr9 3360850 3360901 -114501726 + AT_rich Low_complexity Low_complexity 1 51 0 275 246 85 0 chr9 3362274 3362392 -114500235 - L1ME4a LINE L1 -30 6091 5964 329 349 48 27 chr9 3364602 3364748 -114497879 + MER5B DNA MER1_type 1 149 -29 215 150 50 100 chr9 3365000 3365060 -114497567 - L2 LINE L2 -8 3305 3249 465 287 0 9 chr9 3366459 3366574 -114496053 - L2 LINE L2 0 3272 3159 392 252 29 10 chr9 3367281 3367384 -114495243 - MIR SINE MIR -56 206 102 504 244 78 0 chr9 3367880 3367995 -114494632 + MIR3 SINE MIR 81 204 -4 24 0 0 0 chr9 3370271 3370295 -114492332 + AT_rich Low_complexity Low_complexity 1 24 0 227 224 86 0 chr9 3371382 3371440 -114491187 + MIR SINE MIR 61 123 -85 356 125 16 0 chr9 3371532 3371596 -114491031 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr9 3373143 3373166 -114489461 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 3373231 3373259 -114489368 + AT_rich Low_complexity Low_complexity 1 28 0 263 200 20 0 chr9 3374765 3374815 -114487812 + MER34 LTR ERV1 1 51 -491 1491 175 69 102 chr9 3374826 3375025 -114487602 + MER39 LTR ERV1 232 436 -271 1972 107 0 24 chr9 3375025 3375379 -114487248 + AluSx SINE Alu 1 347 0 1491 175 69 102 chr9 3375379 3375670 -114486957 + MER39 LTR ERV1 436 707 0 1949 101 14 22 chr9 3375757 3376034 -114486593 + AluSc SINE Alu 35 309 0 222 91 0 0 chr9 3376685 3376718 -114485909 + (TG)n Simple_repeat Simple_repeat 2 34 0 304 341 30 22 chr9 3378346 3378481 -114484146 - L2 LINE L2 -19 3294 3159 24 32 0 0 chr9 3378547 3378578 -114484049 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 3379853 3379875 -114482752 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 3380111 3380140 -114482487 + AT_rich Low_complexity Low_complexity 1 29 0 207 139 0 0 chr9 3380480 3380516 -114482111 + (TA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chr9 3382013 3382060 -114480567 + AT_rich Low_complexity Low_complexity 1 47 0 665 195 0 9 chr9 3382416 3382529 -114480098 - L2 LINE L2 -1 3312 3201 21 36 0 0 chr9 3384394 3384422 -114478205 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr9 3385392 3385415 -114477212 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr9 3386914 3386949 -114475678 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 3388172 3388202 -114474425 + AT_rich Low_complexity Low_complexity 1 30 0 2156 106 43 37 chr9 3388435 3388785 -114473842 + THE1B LTR MaLR 11 362 -2 1632 29 0 10 chr9 3390504 3390708 -114471919 + L1PA4 LINE L1 5954 6155 0 2069 138 19 32 chr9 3390822 3391191 -114471436 + THE1B LTR MaLR 1 364 0 197 337 124 72 chr9 3391275 3391468 -114471159 - L2 LINE L2 -555 2759 2557 282 204 0 97 chr9 3394542 3394635 -114467992 - MIR SINE MIR -62 200 117 359 182 15 15 chr9 3395472 3395538 -114467089 + MER5A DNA MER1_type 3 68 -121 1948 119 7 4 chr9 3395547 3395824 -114466803 + AluSx SINE Alu 3 280 -32 667 251 44 35 chr9 3395942 3396145 -114466482 - MER112 DNA MER1_type 0 260 56 240 200 15 62 chr9 3396175 3396240 -114466387 - MER112 DNA MER1_type -175 85 24 630 85 0 30 chr9 3396535 3396636 -114465991 + L1PA5 LINE L1 10 398 -6063 * 38595 68 3 3 chr9 3396621 3402477 -114460150 + L1PA5 LINE L1 612 6469 0 28 0 0 0 chr9 3402477 3402505 -114460122 + AT_rich Low_complexity Low_complexity 1 28 0 658 217 90 6 chr9 3403112 3403278 -114459349 + MER5A DNA MER1_type 5 184 -5 203 371 21 50 chr9 3403640 3403780 -114458847 + L2 LINE L2 3123 3258 -14 1869 138 6 22 chr9 3404213 3404524 -114458103 + AluSx SINE Alu 1 306 -6 244 254 0 0 chr9 3404634 3404689 -114457938 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3404711 3404754 -114457873 + (TA)n Simple_repeat Simple_repeat 2 44 0 717 299 56 43 chr9 3404770 3404854 -114457773 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3404854 3405146 -114457481 - AluSx SINE Alu -18 294 1 717 299 56 43 chr9 3405146 3405456 -114457171 - L1MC4 LINE L1 -2081 5727 5409 303 298 53 40 chr9 3405465 3405693 -114456934 - L1MC4 LINE L1 -818 5328 5098 455 284 100 46 chr9 3405792 3406392 -114456235 - L1MC4 LINE L1 -1207 4939 4284 2173 118 0 3 chr9 3406392 3406689 -114455938 + AluSx SINE Alu 1 296 -16 455 284 100 46 chr9 3406689 3406842 -114455785 - L1MC4 LINE L1 -1862 4284 4141 21 36 0 0 chr9 3407650 3407678 -114454949 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3408429 3408575 -114454052 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3408623 3408937 -114453690 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3409330 3409358 -114453269 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3409564 3409593 -114453034 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3410066 3410129 -114452498 + (TA)n Simple_repeat Simple_repeat 1 63 0 2967 84 10 0 chr9 3410275 3410680 -114451947 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3412301 3412385 -114450242 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3413065 3413378 -114449249 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3413648 3413716 -114448911 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3414978 3415240 -114447387 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3416110 3416447 -114446180 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3416448 3417053 -114445574 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3417479 3417510 -114445117 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3417795 3418004 -114444623 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3418780 3419095 -114443532 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3419235 3419265 -114443362 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3420175 3420644 -114441983 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3420672 3420825 -114441802 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3420874 3420960 -114441667 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3421355 3421796 -114440831 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3422483 3422673 -114439954 - MER5A DNA MER1_type 0 189 1 2164 105 0 3 chr9 3422749 3423045 -114439582 + AluSg SINE Alu 1 295 -15 562 222 40 0 chr9 3423525 3423651 -114438976 - L2 LINE L2 -1 3312 3182 7570 35 0 0 chr9 3423680 3425356 -114437271 + L1PA4 LINE L1 4477 6152 -3 300 289 22 0 chr9 3425369 3425459 -114437168 - L2 LINE L2 -1393 1921 1830 273 282 56 0 chr9 3425566 3425637 -114436990 - L2 LINE L2 -1 3312 3238 21 36 0 0 chr9 3426593 3426621 -114436006 + AT_rich Low_complexity Low_complexity 1 28 0 1263 164 5 14 chr9 3428203 3428422 -114434205 - MER46A DNA MER2_type 0 236 20 281 356 25 19 chr9 3429473 3429633 -114432994 - MIR SINE MIR -27 235 75 297 231 26 39 chr9 3429696 3429774 -114432853 - L2 LINE L2 -40 3273 3197 24 32 0 0 chr9 3430053 3430084 -114432543 + AT_rich Low_complexity Low_complexity 1 31 0 2060 131 3 3 chr9 3430980 3431278 -114431349 + AluSx SINE Alu 1 298 -14 1972 248 66 106 chr9 3431440 3431483 -114431144 - L1MC5 LINE L1 -164 7797 7754 2051 125 3 10 chr9 3431483 3431779 -114430848 + AluSq SINE Alu 1 294 -19 1972 248 66 106 chr9 3431779 3433757 -114428870 - L1MC5 LINE L1 -207 7754 5848 5325 170 55 28 chr9 3433964 3435211 -114427416 + L1MC1 LINE L1 5042 6322 -11 22 0 0 0 chr9 3435285 3435307 -114427320 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr9 3435414 3435437 -114427190 + (CAA)n Simple_repeat Simple_repeat 2 24 0 399 312 104 21 chr9 3435528 3435807 -114426820 + L1ME4a LINE L1 5257 5558 -612 237 243 40 59 chr9 3435989 3436141 -114426486 + L1ME4a LINE L1 5777 5925 -1883 210 284 15 0 chr9 3436148 3436215 -114426412 + (TA)n Simple_repeat Simple_repeat 2 69 0 234 225 0 67 chr9 3436218 3436307 -114426320 + L1ME4a LINE L1 5937 6019 -102 23 78 0 0 chr9 3436387 3436438 -114426189 + AT_rich Low_complexity Low_complexity 1 51 0 4144 264 113 50 chr9 3436538 3436820 -114425807 + L1MEc LINE L1 31 294 -5921 4089 27 0 0 chr9 3436820 3437299 -114425328 + L1PA3 LINE L1 5674 6152 -3 4144 264 113 50 chr9 3437299 3438244 -114424383 + L1MEc LINE L1 294 1178 -5037 334 265 0 0 chr9 3438244 3438327 -114424300 + FLAM SINE Alu 43 125 -8 4144 264 113 50 chr9 3438327 3440097 -114422530 + L1MEc LINE L1 1178 2836 -3379 471 35 0 0 chr9 3440097 3440154 -114422473 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4144 264 113 50 chr9 3440154 3440882 -114421745 + L1MEc LINE L1 2836 4042 -2173 438 69 0 0 chr9 3440882 3440940 -114421687 + (CA)n Simple_repeat Simple_repeat 2 59 0 4144 264 113 50 chr9 3440940 3441028 -114421599 + L1MEc LINE L1 4042 4123 -2092 26 30 0 0 chr9 3441346 3441379 -114421248 + AT_rich Low_complexity Low_complexity 1 33 0 465 174 58 0 chr9 3441387 3441508 -114421119 + L1M4 LINE L1 2904 3031 -3115 1735 145 20 3 chr9 3441517 3441820 -114420807 + L1MA4 LINE L1 5978 6285 -15 182 329 34 67 chr9 3442057 3442206 -114420421 + MIR SINE MIR 107 250 -12 2316 110 27 19 chr9 3442615 3442987 -114419640 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr9 3443672 3443708 -114418919 + AT_rich Low_complexity Low_complexity 1 36 0 713 138 0 17 chr9 3445509 3445625 -114417002 + FLAM_C SINE Alu 28 141 -2 1616 160 4 0 chr9 3445640 3445917 -114416710 + AluJb SINE Alu 33 310 0 228 266 31 94 chr9 3447522 3447650 -114414977 - MIR SINE MIR -33 229 110 388 200 166 35 chr9 3447734 3447826 -114414801 - MER113 DNA MER1_type? 0 521 442 1997 131 0 7 chr9 3447826 3448117 -114414510 - AluSc SINE Alu -20 289 1 388 200 166 35 chr9 3448117 3448169 -114414458 - MER113 DNA MER1_type? -79 442 358 2214 81 14 3 chr9 3448963 3449258 -114413369 + AluSc SINE Alu 1 298 -11 298 314 62 67 chr9 3449943 3450153 -114412474 - MLT1I LTR MaLR -119 290 82 812 54 8 31 chr9 3450567 3450697 -114411930 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1430 251 115 6 chr9 3451033 3451532 -114411095 + MLT1E2 LTR MaLR 92 626 0 23 68 0 0 chr9 3452173 3452217 -114410410 + AT_rich Low_complexity Low_complexity 1 44 0 251 305 76 19 chr9 3452862 3452967 -114409660 + L2 LINE L2 3198 3308 -5 1722 185 55 9 chr9 3453089 3453435 -114409192 - MLT1A1 LTR MaLR -1 364 3 205 26 53 26 chr9 3453756 3453794 -114408833 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2133 41 3 45 chr9 3453796 3454086 -114408541 - AluY SINE Alu -33 278 1 30 0 0 0 chr9 3454124 3454154 -114408473 + AT_rich Low_complexity Low_complexity 1 30 0 42 20 0 0 chr9 3454408 3454457 -114408170 + AT_rich Low_complexity Low_complexity 1 49 0 497 218 80 80 chr9 3454462 3454650 -114407977 + L1ME2 LINE L1 5966 6153 -11 28 48 0 0 chr9 3454957 3454999 -114407628 + AT_rich Low_complexity Low_complexity 1 42 0 366 355 86 19 chr9 3455591 3455859 -114406768 + L3b LINE CR1 1105 1390 -193 1238 288 49 14 chr9 3456003 3456433 -114406194 + LTR16C LTR ERVL 43 487 -4 1832 109 0 117 chr9 3456481 3456831 -114405796 - AluSg1 SINE Alu 0 309 1 350 280 56 0 chr9 3457077 3457202 -114405425 + MER113 DNA MER1_type? 309 440 -81 289 255 143 0 chr9 3457441 3457539 -114405088 + MIR3 SINE MIR 74 185 -23 223 263 13 26 chr9 3457646 3457722 -114404905 + GA-rich Low_complexity Low_complexity 3 77 0 2062 111 0 0 chr9 3457742 3458022 -114404605 + AluY SINE Alu 1 280 -31 297 75 0 0 chr9 3458022 3458062 -114404565 + (CA)n Simple_repeat Simple_repeat 1 40 0 3729 126 52 56 chr9 3458066 3458798 -114403829 + L1MB2 LINE L1 5432 6164 -7 181 339 18 0 chr9 3458813 3458869 -114403758 + MIR3 SINE MIR 137 193 -15 2197 105 0 0 chr9 3459625 3459919 -114402708 + AluY SINE Alu 1 294 -17 2968 215 59 48 chr9 3459952 3460517 -114402110 + L1ME1 LINE L1 5318 5887 -279 7454 31 7 0 chr9 3460517 3461545 -114401082 + L1PA5 LINE L1 5119 6152 -2 2968 215 59 48 chr9 3461545 3461817 -114400810 + L1ME1 LINE L1 5887 6154 -12 297 179 38 19 chr9 3461876 3461982 -114400645 - Charlie7 DNA MER1_type -74 2538 2431 672 282 143 27 chr9 3461982 3462354 -114400273 - Charlie7 DNA MER1_type -1892 720 306 2163 131 3 0 chr9 3462490 3462802 -114399825 - AluSq SINE Alu 0 313 1 451 302 93 22 chr9 3463001 3463269 -114399358 - L2 LINE L2 0 3313 3027 411 21 0 0 chr9 3463826 3463874 -114398753 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2083 108 10 7 chr9 3463877 3464173 -114398454 - AluSq SINE Alu -16 297 1 182 313 0 0 chr9 3464398 3464446 -114398181 + L2 LINE L2 3209 3256 -16 299 271 0 14 chr9 3464450 3464529 -114398098 - MIR SINE MIR -81 127 49 21 71 0 0 chr9 3464950 3464992 -114397635 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr9 3465869 3465895 -114396732 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr9 3465942 3465964 -114396663 + AT_rich Low_complexity Low_complexity 1 22 0 712 186 23 8 chr9 3466011 3466140 -114396487 - FRAM SINE Alu -45 131 1 390 246 79 0 chr9 3466988 3467102 -114395525 - L1MC4 LINE L1 0 8042 7920 195 42 0 0 chr9 3467687 3467711 -114394916 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 345 289 96 26 chr9 3468400 3468556 -114394071 + MIR SINE MIR 96 262 0 208 348 79 22 chr9 3468720 3468947 -114393680 + L2 LINE L2 2835 3074 -239 1851 135 83 0 chr9 3469373 3469662 -114392965 + AluSp SINE Alu 1 313 0 200 213 0 0 chr9 3470231 3470278 -114392349 + (TAA)n Simple_repeat Simple_repeat 1 47 0 445 353 54 5 chr9 3470278 3470502 -114392125 - MIR SINE MIR 0 262 28 208 376 21 0 chr9 3470994 3471087 -114391540 + L2 LINE L2 2941 3035 -237 201 167 0 0 chr9 3471231 3471261 -114391366 + L2 LINE L2 3206 3235 -37 * 221 300 0 0 chr9 3471260 3471310 -114391317 - L3 LINE CR1 -469 1108 1059 23 0 0 0 chr9 3471310 3471333 -114391294 + AT_rich Low_complexity Low_complexity 1 23 0 1587 179 100 3 chr9 3473501 3473830 -114388797 + MER46B DNA MER2_type 1 236 0 742 124 0 18 chr9 3474066 3474179 -114388448 + THE1B LTR MaLR 1 111 -253 1678 93 0 72 chr9 3474183 3474461 -114388166 + THE1-int LTR MaLR 1 258 -1322 2179 133 8 31 chr9 3474474 3474834 -114387793 + THE1B LTR MaLR 13 364 0 368 17 317 0 chr9 3474851 3474911 -114387716 - MADE1 DNA Mariner 0 80 2 338 238 20 0 chr9 3475637 3475738 -114386889 - MER113 DNA MER1_type? -323 198 96 757 258 104 43 chr9 3475746 3476758 -114385869 + HAL1 LINE L1 380 1534 -973 488 244 18 18 chr9 3476745 3476909 -114385718 + HAL1 LINE L1 2022 2185 -322 * 186 43 0 0 chr9 3476992 3477015 -114385612 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 446 291 20 45 chr9 3477075 3477274 -114385353 + HAL1 LINE L1 2285 2478 -29 21 36 0 0 chr9 3477665 3477693 -114384934 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3477704 3477935 -114384692 + L1PB4 LINE L1 5925 6155 -1 21 36 0 0 chr9 3478091 3478119 -114384508 + AT_rich Low_complexity Low_complexity 1 28 0 2287 77 7 3 chr9 3478127 3478427 -114384200 + AluY SINE Alu 1 301 -10 204 312 205 9 chr9 3478926 3479141 -114383486 - L2 LINE L2 -5 3308 3052 328 217 0 72 chr9 3479208 3479291 -114383336 + L2 LINE L2 3232 3308 -5 7504 36 1 0 chr9 3479986 3481663 -114380964 - L1PA4 LINE L1 0 6155 4477 562 222 40 0 chr9 3481692 3481818 -114380809 + L2 LINE L2 3182 3312 -1 2092 109 3 3 chr9 3482298 3482592 -114380035 - AluSg SINE Alu -16 294 1 940 226 0 5 chr9 3482668 3482858 -114379769 + MER5A DNA MER1_type 1 189 0 780 274 98 57 chr9 3483545 3483986 -114378641 - LTR67 LTR ERVL 0 557 99 242 244 12 93 chr9 3484381 3484467 -114378160 + MER112 DNA MER1_type 1 79 -181 495 268 52 7 chr9 3484516 3484669 -114377958 + MER112 DNA MER1_type 90 249 -11 219 390 83 38 chr9 3484697 3485166 -114377461 + L2 LINE L2 2824 3313 0 23 33 0 0 chr9 3486077 3486107 -114376520 + AT_rich Low_complexity Low_complexity 1 30 0 2064 98 14 11 chr9 3486247 3486562 -114376065 - AluSx SINE Alu 0 316 1 636 282 14 53 chr9 3487338 3487547 -114375080 + MIR SINE MIR 58 258 -4 24 32 0 0 chr9 3487832 3487863 -114374764 + AT_rich Low_complexity Low_complexity 1 31 0 208 354 89 54 chr9 3488289 3488894 -114373733 - L2 LINE L2 -28 3244 2619 1788 151 71 0 chr9 3488895 3489232 -114373395 + MER46B DNA MER2_type 1 236 0 459 282 107 38 chr9 3490102 3490364 -114372263 - L2 LINE L2 -1326 1988 1709 305 176 15 0 chr9 3491626 3491694 -114370933 + MER113 DNA MER1_type? 45 113 -408 2227 112 0 10 chr9 3491964 3492277 -114370350 - AluSx SINE Alu -2 310 1 375 262 0 36 chr9 3492957 3493041 -114369586 + MIR3 SINE MIR 109 189 -19 2906 89 10 2 chr9 3494662 3495068 -114367559 + L1PA12 LINE L1 5753 6161 -7 180 238 0 0 chr9 3495214 3495277 -114367350 + (TA)n Simple_repeat Simple_repeat 2 64 0 22 35 0 0 chr9 3495750 3495779 -114366848 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr9 3495985 3496013 -114366614 + AT_rich Low_complexity Low_complexity 1 28 0 2179 105 0 10 chr9 3496406 3496720 -114365907 - AluSx SINE Alu -1 311 1 344 226 89 96 chr9 3496768 3496914 -114365713 - L1MC4a LINE L1 -1844 5964 5820 21 36 0 0 chr9 3497665 3497693 -114364934 + AT_rich Low_complexity Low_complexity 1 28 0 596 281 107 48 chr9 3498499 3498653 -114363974 + L1MC4 LINE L1 4140 4283 -1863 2173 118 0 3 chr9 3498653 3498950 -114363677 - AluSx SINE Alu -16 296 1 596 281 107 48 chr9 3498950 3499550 -114363077 + L1MC4 LINE L1 4283 4939 -1207 707 301 56 43 chr9 3499886 3500196 -114362431 + L1MC4 LINE L1 5409 5727 -2081 2030 113 14 7 chr9 3500196 3500488 -114362139 + AluSx SINE Alu 1 294 -18 707 301 56 43 chr9 3500488 3500572 -114362055 + L1MC4 LINE L1 5727 5808 -2000 387 0 0 0 chr9 3500588 3500631 -114361996 + (TA)n Simple_repeat Simple_repeat 2 44 0 244 254 0 0 chr9 3500653 3500708 -114361919 + L1MC4 LINE L1 6649 6703 -1339 6462 37 4 2 chr9 3501028 3501821 -114360806 - L1PA4 LINE L1 0 6155 5362 201 256 0 0 chr9 3501822 3501861 -114360766 + L3 LINE CR1 1526 1564 -13 410 296 140 34 chr9 3502488 3502667 -114359960 - MIR3 SINE MIR -9 199 2 457 297 30 30 chr9 3502759 3502924 -114359703 - MIR SINE MIR 0 262 98 352 254 164 0 chr9 3502973 3503083 -114359544 - Charlie8 DNA MER1_type -2179 238 111 632 0 0 0 chr9 3503839 3503915 -114358712 + L1HS LINE L1 6080 6155 0 312 282 55 55 chr9 3504010 3504140 -114358487 + Charlie8 DNA MER1_type 7 139 -202 2002 135 0 28 chr9 3504140 3504458 -114358169 + AluSq SINE Alu 1 309 -4 312 282 55 55 chr9 3504458 3504490 -114358137 + Charlie8 DNA MER1_type 138 169 -172 2168 111 3 0 chr9 3504657 3504955 -114357672 + AluSg SINE Alu 1 299 -11 380 211 0 0 chr9 3505103 3505179 -114357448 - MIR SINE MIR -106 156 81 850 258 41 9 chr9 3505737 3505958 -114356669 - MIR SINE MIR -33 229 2 32 26 0 0 chr9 3507638 3507677 -114354950 + AT_rich Low_complexity Low_complexity 1 39 0 446 295 54 63 chr9 3509838 3510153 -114352474 + L2 LINE L2 1762 2073 -1241 201 158 0 0 chr9 3510185 3510223 -114352404 + A-rich Low_complexity Low_complexity 5 42 0 216 367 0 46 chr9 3510303 3510412 -114352215 + L2 LINE L2 2207 2310 -1004 418 325 61 99 chr9 3510852 3510934 -114351693 + L2 LINE L2 2842 2926 -346 1695 165 3 25 chr9 3510934 3511249 -114351378 - AluJb SINE Alu -4 308 1 418 325 61 99 chr9 3511249 3511609 -114351018 + L2 LINE L2 2926 3267 -5 406 198 113 19 chr9 3512299 3512405 -114350222 - MIR SINE MIR -49 213 98 23 0 0 0 chr9 3512405 3512428 -114350199 + AT_rich Low_complexity Low_complexity 1 23 0 222 62 0 0 chr9 3513570 3513602 -114349025 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 285 135 0 0 chr9 3513601 3513653 -114348974 + (CA)n Simple_repeat Simple_repeat 1 52 0 290 315 170 6 chr9 3514774 3514939 -114347688 - MIR3 SINE MIR -7 201 10 558 0 0 0 chr9 3515150 3515212 -114347415 + (TG)n Simple_repeat Simple_repeat 1 62 0 1472 175 77 0 chr9 3516358 3516643 -114345984 - AluJb SINE Alu -5 307 1 923 103 0 0 chr9 3516661 3516787 -114345840 - AluSq/x SINE Alu -181 132 7 298 370 82 32 chr9 3519010 3519229 -114343398 - MIR SINE MIR -13 249 20 307 247 78 0 chr9 3519488 3519565 -114343062 + L1MC4 LINE L1 6614 6696 -1346 567 221 0 0 chr9 3519635 3519793 -114342834 + (TA)n Simple_repeat Simple_repeat 1 158 0 243 236 0 0 chr9 3519943 3520015 -114342612 + (TA)n Simple_repeat Simple_repeat 1 72 0 775 188 29 0 chr9 3520022 3520160 -114342467 - FRAM SINE Alu -36 140 1 376 279 124 25 chr9 3521029 3521190 -114341437 - MIR SINE MIR -84 178 2 2152 217 112 11 chr9 3521410 3522429 -114340198 + L1MEc LINE L1 1982 3049 -3166 720 271 15 73 chr9 3522855 3523128 -114339499 + MIR SINE MIR 6 262 0 2218 115 0 0 chr9 3523158 3523463 -114339164 - AluSx SINE Alu -7 305 1 21 36 0 0 chr9 3524110 3524138 -114338489 + AT_rich Low_complexity Low_complexity 1 28 0 511 156 0 7 chr9 3524417 3524541 -114338086 + MER2 DNA MER2_type 1 204 -141 303 111 74 25 chr9 3524541 3524622 -114338005 - L1MA4A LINE L1 0 6303 6219 303 291 0 38 chr9 3524631 3524710 -114337917 + MER2 DNA MER2_type 270 345 0 404 205 47 94 chr9 3525226 3525353 -114337274 - MIR SINE MIR -56 206 86 286 327 77 0 chr9 3526367 3526471 -114336156 - MIR SINE MIR -40 222 111 24 0 0 0 chr9 3527686 3527710 -114334917 + AT_rich Low_complexity Low_complexity 1 24 0 2027 197 96 48 chr9 3527938 3528543 -114334084 + L1ME1 LINE L1 5504 6137 -29 320 77 19 0 chr9 3528544 3528596 -114334031 + (TA)n Simple_repeat Simple_repeat 1 53 0 2209 77 0 7 chr9 3528649 3528948 -114333679 + AluY SINE Alu 1 297 -14 2677 19 3 0 chr9 3529424 3529734 -114332893 - AluY SINE Alu 0 311 1 1542 167 13 39 chr9 3530022 3530328 -114332299 + AluJb SINE Alu 1 298 -14 664 249 63 34 chr9 3530706 3531056 -114331571 - L1M4 LINE L1 -4879 1663 1304 244 213 0 0 chr9 3531214 3531261 -114331366 - MLT1K LTR MaLR -55 533 487 2302 92 20 0 chr9 3531511 3531814 -114330813 - AluSc SINE Alu 0 309 1 1111 308 186 19 chr9 3531814 3532440 -114330187 + L3 LINE CR1 246 1015 -562 830 212 111 49 chr9 3532440 3532784 -114329843 + MLT1A1 LTR MaLR 1 365 0 1111 308 186 19 chr9 3532784 3532895 -114329732 + L3 LINE CR1 1015 1106 -471 300 283 15 91 chr9 3533079 3533277 -114329350 - L2 LINE L2 -48 3265 3083 216 0 0 0 chr9 3533294 3533318 -114329309 + (GGGAA)n Simple_repeat Simple_repeat 4 27 0 230 365 65 35 chr9 3533449 3533649 -114328978 - L2 LINE L2 -485 2829 2624 250 272 161 44 chr9 3533711 3533902 -114328725 + MIR SINE MIR 3 216 -46 38 22 0 0 chr9 3534789 3534834 -114327793 + AT_rich Low_complexity Low_complexity 1 45 0 2081 114 0 33 chr9 3534951 3535257 -114327370 - AluSx SINE Alu -11 301 6 453 290 30 8 chr9 3535538 3535669 -114326958 - MIR SINE MIR -31 231 98 1443 196 0 8 chr9 3536107 3536372 -114326255 - AluJo SINE Alu -49 263 1 617 144 0 9 chr9 3536848 3536959 -114325668 - L1MC3 LINE L1 -2 7783 7674 245 284 0 15 chr9 3536983 3537050 -114325577 - MLT1F1 LTR MaLR -457 110 45 1729 161 40 83 chr9 3537050 3537138 -114325489 - L1MC3 LINE L1 -687 7098 7008 1736 143 32 4 chr9 3537138 3537417 -114325210 - AluJb SINE Alu -25 287 1 1729 161 40 83 chr9 3537417 3537749 -114324878 - L1MC3 LINE L1 -777 7008 6696 202 244 0 0 chr9 3538263 3538308 -114324319 + A-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr9 3538532 3538554 -114324073 + AT_rich Low_complexity Low_complexity 1 22 0 1632 150 25 50 chr9 3538783 3539103 -114323524 - AluJo SINE Alu 0 312 1 461 260 64 46 chr9 3539468 3539641 -114322986 - MIR SINE MIR -17 245 70 352 118 118 118 chr9 3540230 3540323 -114322304 - ORSL DNA AcHobo 0 275 183 2531 37 0 0 chr9 3540349 3540645 -114321982 - AluY SINE Alu -15 296 1 215 127 18 36 chr9 3540710 3540765 -114321862 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 192 284 84 84 chr9 3541650 3541745 -114320882 + MIR SINE MIR 38 132 -76 14011 129 29 104 chr9 3542013 3544951 -114317676 + Tigger2 DNA MER2_type 3 2718 0 1107 185 25 0 chr9 3545114 3545314 -114317313 - MER58A DNA MER1_type -19 205 1 414 230 30 10 chr9 3545372 3545472 -114317155 - MER5A DNA MER1_type -79 110 9 355 298 8 58 chr9 3545486 3545607 -114317020 + L2 LINE L2 3199 3313 0 226 396 9 0 chr9 3545843 3545949 -114316678 + L2 LINE L2 2877 2983 -289 4211 121 65 8 chr9 3546094 3546806 -114315821 - Tigger3(Golem) DNA MER2_type -1 3028 2277 652 185 0 0 chr9 3546797 3546905 -114315722 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 369 280 21 0 chr9 3546970 3547063 -114315564 + L2 LINE L2 3178 3272 0 207 0 0 0 chr9 3547126 3547149 -114315478 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 3548262 3548285 -114314342 + AT_rich Low_complexity Low_complexity 1 23 0 6811 240 124 21 chr9 3549743 3552415 -114310212 + L1ME1 LINE L1 2125 5074 -1141 3474 212 128 70 chr9 3552414 3552632 -114309995 + L1MC3 LINE L1 6371 6575 -1210 * 216 0 0 0 chr9 3552632 3552656 -114309971 + (GA)n Simple_repeat Simple_repeat 1 24 0 3474 212 128 70 chr9 3552656 3553153 -114309474 + L1MC3 LINE L1 6575 7042 -743 289 310 0 0 chr9 3553153 3553224 -114309403 + MLT1F1 LTR MaLR 64 134 -433 3474 212 128 70 chr9 3553224 3553241 -114309386 + L1MC3 LINE L1 7042 7057 -728 2194 92 3 0 chr9 3553241 3553545 -114309082 + AluSq SINE Alu 1 305 0 3474 212 128 70 chr9 3553545 3554076 -114308551 + L1MC3 LINE L1 7057 7784 -1 3170 214 59 29 chr9 3554072 3554514 -114308113 + L1ME1 LINE L1 5061 5488 -747 * 5180 84 13 0 chr9 3554514 3555212 -114307415 - L1PA11 LINE L1 0 6174 5468 3170 214 59 29 chr9 3555212 3555922 -114306705 + L1ME1 LINE L1 5488 6230 -5 737 318 32 48 chr9 3555940 3556314 -114306313 + L3 LINE CR1 1183 1550 -27 230 301 126 7 chr9 3556643 3556786 -114305841 - MIR SINE MIR 0 262 103 504 374 161 15 chr9 3557057 3557461 -114305166 + L2 LINE L2 2810 3272 0 324 340 19 0 chr9 3561884 3561987 -114300640 + MIR SINE MIR 47 151 -111 21 0 0 0 chr9 3562736 3562757 -114299870 + AT_rich Low_complexity Low_complexity 1 21 0 45 0 0 0 chr9 3563383 3563428 -114299199 + AT_rich Low_complexity Low_complexity 1 45 0 3577 237 93 37 chr9 3564346 3565771 -114296856 + L1ME LINE L1 3591 5095 -1051 1993 140 37 31 chr9 3565872 3566223 -114296404 + MLT1B LTR MaLR 30 382 -8 544 255 101 27 chr9 3566254 3566442 -114296185 - LTR33 LTR ERVL -8 513 312 743 246 68 50 chr9 3566470 3566690 -114295937 - LTR33 LTR ERVL -297 224 1 1245 161 161 20 chr9 3568405 3568659 -114293968 - AluJo SINE Alu -12 290 1 2078 100 4 7 chr9 3569367 3569648 -114292979 + AluSp SINE Alu 5 284 -29 224 30 30 0 chr9 3570270 3570303 -114292324 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2154 100 0 0 chr9 3570305 3570585 -114292042 - AluSg SINE Alu -30 280 1 2741 88 0 23 chr9 3570585 3570982 -114291645 - L1MA3 LINE L1 -478 5827 5440 3540 83 2 10 chr9 3570995 3571491 -114291136 + L1PB1 LINE L1 5660 6151 0 2351 59 3 26 chr9 3571813 3572119 -114290508 - AluY SINE Alu -12 299 1 2114 106 10 3 chr9 3572232 3572524 -114290103 + AluSp SINE Alu 1 294 -19 626 200 32 0 chr9 3572618 3572743 -114289884 + L1ME LINE L1 5474 5602 -564 2410 70 17 0 chr9 3572743 3573041 -114289586 + AluSc SINE Alu 1 303 -6 1413 143 84 16 chr9 3573050 3573301 -114289326 + AluJb SINE Alu 36 303 -9 2418 76 3 0 chr9 3573307 3573608 -114289019 + AluSx SINE Alu 3 304 -8 675 231 78 12 chr9 3573791 3574087 -114288540 - L1MCa LINE L1 -3948 2478 2216 21 0 0 0 chr9 3574244 3574265 -114288362 + AT_rich Low_complexity Low_complexity 1 21 0 1201 211 24 0 chr9 3574265 3574511 -114288116 - MER90 LTR ERV1 0 614 363 2126 93 14 7 chr9 3574511 3574800 -114287827 - AluSc SINE Alu -18 291 1 21 0 0 0 chr9 3574805 3574826 -114287801 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr9 3575178 3575200 -114287427 + (TC)n Simple_repeat Simple_repeat 2 23 0 412 288 106 8 chr9 3575623 3575755 -114286872 - MIR3 SINE MIR -5 203 59 1598 161 11 90 chr9 3576328 3576706 -114285921 + MER7A DNA MER2_type 1 346 0 822 124 23 0 chr9 3578074 3578203 -114284424 + LTR13 LTR ERVK 1 132 -875 6591 66 6 75 chr9 3578207 3579191 -114283436 + LTR13 LTR ERVK 92 1007 0 1982 146 3 13 chr9 3579274 3579589 -114283038 - AluJo SINE Alu 0 312 1 303 276 114 16 chr9 3579715 3579838 -114282789 + MIR SINE MIR 23 157 -105 764 169 22 7 chr9 3580295 3580431 -114282196 + MER5A DNA MER1_type 1 138 -51 303 309 168 35 chr9 3580778 3581063 -114281564 - L3 LINE CR1 -35 1542 1220 295 241 11 35 chr9 3581972 3582059 -114280568 - MIR SINE MIR -7 255 171 402 204 214 0 chr9 3582085 3582183 -114280444 - AluJb SINE Alu -193 119 1 767 280 76 5 chr9 3582191 3582402 -114280225 + L2 LINE L2 2109 2334 -980 1467 181 4 12 chr9 3582410 3582669 -114279958 - AluJo SINE Alu -55 257 1 822 209 63 29 chr9 3582674 3582880 -114279747 + L1M4 LINE L1 3926 4138 -2008 26 64 0 0 chr9 3583873 3583920 -114278707 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr9 3584249 3584284 -114278343 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr9 3585230 3585264 -114277363 + AT_rich Low_complexity Low_complexity 1 34 0 1499 208 10 17 chr9 3585705 3585993 -114276634 + AluJo SINE Alu 1 286 -26 1165 175 0 54 chr9 3586560 3586783 -114275844 - AluJo SINE Alu -17 295 85 733 247 123 0 chr9 3586966 3587193 -114275434 + MIR SINE MIR 8 262 0 347 249 116 52 chr9 3588069 3588242 -114274385 + MER20 DNA MER1_type 29 212 -7 229 212 212 0 chr9 3588254 3588320 -114274307 + L2 LINE L2 3229 3308 -5 207 276 161 0 chr9 3588624 3588711 -114273916 + MIR SINE MIR 12 112 -150 420 297 27 60 chr9 3588723 3588793 -114273834 + MIR SINE MIR 84 155 -107 756 248 97 19 chr9 3588793 3589103 -114273524 - MER46C DNA MER2_type 0 338 5 420 297 27 60 chr9 3589103 3589217 -114273410 + MIR SINE MIR 155 262 0 1280 176 9 94 chr9 3589679 3589997 -114272630 + AluJo SINE Alu 1 291 -21 28 48 0 0 chr9 3589997 3590039 -114272588 + AT_rich Low_complexity Low_complexity 1 42 0 295 315 79 0 chr9 3590169 3590296 -114272331 - MIR SINE MIR -6 256 120 1583 95 5 5 chr9 3590719 3590929 -114271698 + AluSp SINE Alu 1 210 -103 3222 179 59 14 chr9 3591036 3591684 -114270943 + L1MB5 LINE L1 5492 6168 -6 6661 61 2 24 chr9 3591769 3593161 -114269466 + L1PA7 LINE L1 4774 6134 -20 285 29 0 0 chr9 3593161 3593195 -114269432 + (TG)n Simple_repeat Simple_repeat 2 35 0 367 325 43 11 chr9 3593203 3593391 -114269236 + L1M4 LINE L1 4260 4453 -1693 23 33 0 0 chr9 3593803 3593833 -114268794 + AT_rich Low_complexity Low_complexity 1 30 0 1375 74 0 23 chr9 3593856 3594032 -114268595 + AluY SINE Alu 1 172 -139 22 35 0 0 chr9 3594718 3594747 -114267880 + AT_rich Low_complexity Low_complexity 1 29 0 2568 49 0 0 chr9 3595648 3595954 -114266673 - AluY SINE Alu -5 306 1 326 175 23 115 chr9 3595978 3596127 -114266500 - L1ME LINE L1 -355 5766 5674 2469 59 0 13 chr9 3596127 3596430 -114266197 - AluY SINE Alu -10 301 3 326 175 23 115 chr9 3596430 3596465 -114266162 - L1ME LINE L1 -447 5674 5637 2474 55 3 3 chr9 3596615 3596925 -114265702 - AluY SINE Alu -1 310 1 480 194 21 11 chr9 3597181 3597274 -114265353 + MER20 DNA MER1_type 1 94 -125 435 123 14 0 chr9 3598087 3598160 -114264467 + AluS SINE Alu 1 74 -239 2224 66 3 35 chr9 3598299 3598617 -114264010 + AluY SINE Alu 1 308 -3 4653 190 50 30 chr9 3598631 3600262 -114262365 - L1MB2 LINE L1 -18 6153 4555 2023 127 0 10 chr9 3600262 3600581 -114262046 - AluJb SINE Alu 0 312 1 4653 190 50 30 chr9 3600581 3600955 -114261672 - L1MB2 LINE L1 -1616 4555 4104 2368 55 3 35 chr9 3600955 3601265 -114261362 + AluY SINE Alu 1 300 -11 4653 190 50 30 chr9 3601265 3601295 -114261332 - L1MB2 LINE L1 -2067 4104 4076 37646 55 7 2 chr9 3601304 3606918 -114255709 - L1PA5 LINE L1 0 6154 511 369 62 31 31 chr9 3607020 3607084 -114255543 + Alu SINE Alu 238 301 -1 4540 207 127 36 chr9 3607098 3607799 -114254828 + L1MCb LINE L1 636 1272 -5292 2521 46 0 7 chr9 3607799 3608103 -114254524 - AluY SINE Alu -9 302 1 4540 207 127 36 chr9 3608103 3609164 -114253463 + L1MCb LINE L1 1272 2236 -4328 7258 47 5 0 chr9 3609164 3610225 -114252402 + L1PA5 LINE L1 5094 6151 -3 4540 207 127 36 chr9 3610225 3611000 -114251627 + L1MCb LINE L1 2236 3351 -3213 1340 246 47 0 chr9 3611008 3611395 -114251232 + L1MCb LINE L1 3908 4312 -2252 342 131 0 0 chr9 3611401 3611462 -114251165 + L1MC2 LINE L1 6274 6334 -10 2736 244 29 33 chr9 3611467 3612465 -114250162 + L1M4 LINE L1 2490 3483 -2663 2080 224 102 8 chr9 3612565 3613209 -114249418 - L1M4 LINE L1 -1264 4882 4178 364 262 24 36 chr9 3613335 3613503 -114249124 - HAL1b LINE L1 -435 913 748 * 622 303 101 21 chr9 3613485 3613822 -114248805 + L1MEd LINE L1 6 369 -5750 497 171 0 0 chr9 3614228 3614304 -114248323 + AluJ/FLAM SINE Alu 6 81 -231 382 93 0 0 chr9 3614383 3614437 -114248190 + Alu SINE Alu 243 296 -6 182 333 56 0 chr9 3615184 3615274 -114247353 + MIR SINE MIR 49 143 -119 1963 117 4 0 chr9 3615506 3615779 -114246848 - AluSx SINE Alu 0 312 39 22 35 0 0 chr9 3615870 3615899 -114246728 + AT_rich Low_complexity Low_complexity 1 29 0 436 123 74 164 chr9 3616145 3616267 -114246360 + FRAM SINE Alu 49 159 -17 586 249 117 10 chr9 3616563 3616760 -114245867 - MIR SINE MIR 0 262 45 2091 137 0 0 chr9 3616822 3617115 -114245512 + AluY SINE Alu 1 293 -18 1492 130 0 5 chr9 3617361 3617577 -114245050 + AluSg/x SINE Alu 86 300 -10 509 379 86 19 chr9 3617590 3618123 -114244504 + L2 LINE L2 2268 2836 -478 272 368 40 0 chr9 3618542 3618667 -114243960 + L2 LINE L2 2907 3036 -236 684 325 51 0 chr9 3618677 3618914 -114243713 - MIR SINE MIR -3 259 11 2136 133 0 0 chr9 3619124 3619426 -114243201 + AluSg SINE Alu 1 302 -8 296 217 36 12 chr9 3620807 3620890 -114241737 + MLT1J1 LTR MaLR 360 444 -2 1428 167 0 0 chr9 3621324 3621540 -114241087 + AluJb SINE Alu 72 287 -25 32 0 0 0 chr9 3621930 3621962 -114240665 + AT_rich Low_complexity Low_complexity 1 32 0 1643 126 84 11 chr9 3621962 3622224 -114240403 - AluSx SINE Alu -31 281 1 520 265 90 90 chr9 3623350 3623761 -114238866 + MLT1J LTR MaLR 1 411 -100 502 254 24 102 chr9 3623966 3624171 -114238456 + MIR SINE MIR 20 208 -54 252 0 0 0 chr9 3624196 3624224 -114238403 + (CA)n Simple_repeat Simple_repeat 2 29 0 297 315 130 0 chr9 3624295 3624441 -114238186 + MIR3 SINE MIR 33 197 -11 313 281 30 85 chr9 3624475 3624627 -114238000 + L1ME3A LINE L1 5968 6108 -62 1731 204 66 75 chr9 3624627 3625186 -114237441 - MLT2B3 LTR ERVL 0 554 1 313 281 30 85 chr9 3625186 3625232 -114237395 + L1ME3A LINE L1 6108 6155 -15 2366 82 3 0 chr9 3625306 3625610 -114237017 + AluSg SINE Alu 1 305 -5 499 157 104 17 chr9 3625961 3626076 -114236551 - L1MC2 LINE L1 0 6344 6220 31403 108 10 59 chr9 3626256 3632705 -114229922 - L1PA7 LINE L1 -15 6139 12 1143 138 5 0 chr9 3632715 3632904 -114229723 - L1MC2 LINE L1 -108 6236 6047 6759 129 24 57 chr9 3632917 3633406 -114229221 - Tigger3b DNA MER2_type -1823 1205 701 1941 124 0 37 chr9 3633406 3633705 -114228922 + AluJb SINE Alu 1 288 -24 6759 129 24 57 chr9 3633705 3634461 -114228166 - Tigger3b DNA MER2_type -2327 701 1 1702 149 63 23 chr9 3634481 3634830 -114227797 - L1MC2 LINE L1 -339 6005 5643 2223 113 3 0 chr9 3634999 3635301 -114227326 + AluSg SINE Alu 1 303 -7 2244 98 0 7 chr9 3635647 3635944 -114226683 + AluSx SINE Alu 3 297 -15 366 345 91 0 chr9 3636548 3636713 -114225914 + MIR SINE MIR 49 228 -34 276 345 78 0 chr9 3636746 3636888 -114225739 + MIR SINE MIR 85 237 -25 770 177 0 0 chr9 3637907 3638031 -114224596 + AluSg/x SINE Alu 170 293 -19 846 237 71 0 chr9 3638556 3638754 -114223873 + MER58C DNA MER1_type 4 215 0 273 242 44 77 chr9 3639504 3639595 -114223032 + MER102b DNA MER1_type 254 341 0 4174 122 10 57 chr9 3639617 3640390 -114222237 + L1MB3 LINE L1 5440 6176 -7 193 333 0 0 chr9 3640445 3640493 -114222134 + MIR SINE MIR 49 96 -166 335 364 120 16 chr9 3640689 3641149 -114221478 - L2 LINE L2 -221 3051 2550 313 335 29 41 chr9 3641225 3641395 -114221232 + L2 LINE L2 2201 2368 -946 181 305 183 37 chr9 3641733 3641836 -114220791 + MIR SINE MIR 60 147 -115 533 247 114 6 chr9 3641836 3641994 -114220633 + MER5B DNA MER1_type 1 175 -3 181 305 183 37 chr9 3641994 3642054 -114220573 + MIR SINE MIR 147 247 -15 * 570 284 111 0 chr9 3642049 3642257 -114220370 - MIR SINE MIR 0 262 32 525 312 74 39 chr9 3644194 3644596 -114218031 - L2 LINE L2 -205 3108 2682 356 270 26 59 chr9 3644910 3645062 -114217565 + L1M4 LINE L1 3843 3989 -2157 1059 135 30 110 chr9 3645402 3645639 -114216988 - MER20 DNA MER1_type 0 219 2 1086 238 45 79 chr9 3645741 3646145 -114216482 - MLT1B LTR MaLR 0 390 1 377 328 65 14 chr9 3646284 3646854 -114215773 + L1M4 LINE L1 4151 4793 -1353 2418 67 0 3 chr9 3647065 3647365 -114215262 - AluY SINE Alu -12 299 1 336 325 33 8 chr9 3647474 3647594 -114215033 - L2 LINE L2 -703 2611 2489 3474 217 117 45 chr9 3647615 3648758 -114213869 - MER69B DNA AcHobo -1 1225 1 201 300 0 0 chr9 3648761 3648811 -114213816 - L2 LINE L2 -833 2481 2432 2689 218 65 37 chr9 3648885 3649661 -114212966 + L1MDb LINE L1 457 1389 -5020 1770 152 0 7 chr9 3649743 3650013 -114212614 + AluJb SINE Alu 1 268 -44 214 75 75 0 chr9 3650061 3650101 -114212526 + A-rich Low_complexity Low_complexity 6 48 0 2419 152 43 10 chr9 3650127 3650541 -114212086 + MSTA LTR MaLR 1 428 0 633 157 9 0 chr9 3650541 3650649 -114211978 + MSTA-int LTR MaLR 1 109 -1542 1581 156 0 8 chr9 3650649 3650893 -114211734 + MSTB LTR MaLR 185 426 0 1453 242 63 0 chr9 3650893 3651323 -114211304 + L1MDb LINE L1 1503 1959 -4447 889 189 0 0 chr9 3651326 3651479 -114211148 + FRAM SINE Alu 14 166 -10 2969 236 71 10 chr9 3651585 3652832 -114209795 + L1MDb LINE L1 2072 3379 -3027 2212 299 105 66 chr9 3652858 3654118 -114208509 + L2 LINE L2 984 2320 -994 1599 190 58 0 chr9 3654118 3654413 -114208214 + AluJb SINE Alu 1 312 0 2212 299 105 66 chr9 3654413 3654736 -114207891 + L2 LINE L2 2320 2629 -685 492 337 7 95 chr9 3655366 3655660 -114206967 + L3 LINE CR1 110 377 -1200 487 299 184 0 chr9 3655683 3655900 -114206727 - MIR SINE MIR 0 262 6 335 383 54 9 chr9 3655979 3656201 -114206426 + L3 LINE CR1 483 714 -863 2477 121 57 45 chr9 3656210 3656579 -114206048 + MSTA LTR MaLR 1 377 -51 1732 163 144 21 chr9 3656579 3656960 -114205667 + MSTA LTR MaLR 1 428 0 2477 121 57 45 chr9 3656960 3657013 -114205614 + MSTA LTR MaLR 377 428 0 193 239 137 34 chr9 3657013 3657130 -114205497 + L3 LINE CR1 724 852 -725 4852 28 11 0 chr9 3657136 3657708 -114204919 + L1PA4 LINE L1 5575 6152 -3 36 53 0 0 chr9 3658200 3658257 -114204370 + AT_rich Low_complexity Low_complexity 1 57 0 652 264 115 19 chr9 3658450 3658711 -114203916 + L3 LINE CR1 936 1221 -356 732 318 61 0 chr9 3658796 3659010 -114203617 + MIR SINE MIR 3 229 -33 2086 142 33 28 chr9 3659335 3659695 -114202932 + THE1B LTR MaLR 3 364 0 229 188 16 16 chr9 3660129 3660193 -114202434 - L1MDb LINE L1 -5440 969 906 1055 306 91 72 chr9 3660215 3660709 -114201918 - L2 LINE L2 -6 3307 2824 1646 167 47 0 chr9 3660709 3660985 -114201642 + AluJb SINE Alu 11 299 -13 1055 306 91 72 chr9 3660985 3661333 -114201294 - L2 LINE L2 -489 2824 2484 2490 63 0 0 chr9 3661333 3661632 -114200995 + AluY SINE Alu 1 299 -12 1055 306 91 72 chr9 3661632 3662003 -114200624 - L2 LINE L2 -829 2484 2058 330 302 213 0 chr9 3662234 3662403 -114200224 - L2 LINE L2 -1320 1994 1790 282 359 34 17 chr9 3662767 3662884 -114199743 - MIR3 SINE MIR -54 154 36 2459 63 7 3 chr9 3662990 3663293 -114199334 + AluY SINE Alu 1 304 -7 640 343 30 18 chr9 3663537 3663872 -114198755 + HERVL LTR ERVL 3569 3907 -1747 2037 146 21 29 chr9 3663872 3664250 -114198377 - THE1C LTR MaLR 0 375 1 1478 381 34 5 chr9 3664482 3665448 -114197179 + HERVL LTR ERVL 3962 4955 -699 613 263 120 31 chr9 3665859 3666113 -114196514 + LTR16A LTR ERVL 3 282 -175 813 196 0 0 chr9 3666115 3666258 -114196369 - FLAM_C SINE Alu 0 143 1 5211 175 90 0 chr9 3666625 3667561 -114195066 + LTR28 LTR ERV1 1 1020 0 23 33 0 0 chr9 3667576 3667606 -114195021 + AT_rich Low_complexity Low_complexity 1 30 0 507 165 31 0 chr9 3667854 3667951 -114194676 - L1M4 LINE L1 -539 5645 5546 210 91 0 0 chr9 3668422 3668455 -114194172 + (T)n Simple_repeat Simple_repeat 1 33 0 204 297 0 31 chr9 3669343 3669407 -114193220 - MER5A DNA MER1_type 0 189 128 25 0 0 0 chr9 3669437 3669462 -114193165 + AT_rich Low_complexity Low_complexity 1 25 0 258 240 8 104 chr9 3669669 3669794 -114192833 - L1MC/D LINE L1 -1921 5887 5775 390 293 24 16 chr9 3669805 3669928 -114192699 + MER5A DNA MER1_type 44 167 -22 404 278 59 53 chr9 3671196 3671365 -114191262 - MIR SINE MIR -87 175 6 220 238 0 32 chr9 3672086 3672149 -114190478 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 326 146 12 61 chr9 3673564 3673646 -114188981 - HAL1 LINE L1 0 2507 2430 4433 97 11 32 chr9 3673737 3674399 -114188228 - MER39B LTR ERV1 -1 652 5 255 291 6 55 chr9 3674445 3674610 -114188017 - L1MC5 LINE L1 -33 7928 7772 2034 252 68 43 chr9 3674629 3674914 -114187713 - L1ME3A LINE L1 -13 6157 5881 2490 87 3 0 chr9 3674914 3675226 -114187401 - AluSp SINE Alu 0 313 1 2034 252 68 43 chr9 3675226 3676564 -114186063 - L1ME3A LINE L1 -289 5881 4484 247 316 51 17 chr9 3676788 3676965 -114185662 - HAL1 LINE L1 -1198 1309 1127 243 0 0 0 chr9 3676980 3677007 -114185620 + (TA)n Simple_repeat Simple_repeat 1 27 0 5945 115 7 3 chr9 3677007 3678353 -114184274 - L1PA15 LINE L1 -10 7574 6223 4417 201 18 10 chr9 3678355 3679378 -114183249 - L1PA15 LINE L1 -1435 6130 5100 545 202 23 55 chr9 3679360 3679578 -114183049 - HAL1 LINE L1 -1341 1166 956 * 566 137 0 0 chr9 3679583 3679685 -114182942 - L1MA8 LINE L1 -7 6284 6183 787 277 68 10 chr9 3679710 3680122 -114182505 - L1ME3A LINE L1 -1678 4468 4033 1093 159 0 23 chr9 3680126 3680302 -114182325 - AluJb SINE Alu -140 172 1 16913 148 68 5 chr9 3680302 3681707 -114180920 - L1PA15 LINE L1 -4385 3180 1865 204 40 0 0 chr9 3681707 3681732 -114180895 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 16913 148 68 5 chr9 3681732 3683308 -114179319 - L1PA15 LINE L1 -5700 1865 11 17218 140 18 10 chr9 3683404 3686687 -114175940 - L1PA11 LINE L1 -2 7610 4286 2264 99 3 10 chr9 3686687 3686991 -114175636 - AluSg SINE Alu -8 302 1 17218 140 18 10 chr9 3686991 3687705 -114174922 - L1PA11 LINE L1 -3326 4286 3579 28613 120 11 57 chr9 3687718 3693753 -114168874 - L1PA7 LINE L1 -15 6139 426 219 36 0 0 chr9 3693753 3693781 -114168846 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28613 120 11 57 chr9 3693781 3694178 -114168449 - L1PA7 LINE L1 -5728 426 12 4722 239 25 37 chr9 3694189 3696713 -114165914 - L1PA11 LINE L1 -3999 3585 7 827 244 41 51 chr9 3696724 3697114 -114165513 - L1M4 LINE L1 -951 5195 4810 652 256 122 48 chr9 3697117 3697684 -114164943 - L1MDb LINE L1 -5024 1194 630 362 367 66 15 chr9 3697748 3697944 -114164683 - L1MDb LINE L1 -5831 565 360 961 273 60 78 chr9 3698971 3699558 -114163069 + MER77 LTR ERV1 54 602 -3 825 217 38 79 chr9 3699566 3699946 -114162681 + MLT1A1 LTR MaLR 1 422 -6 757 179 0 0 chr9 3700528 3700651 -114161976 + FLAM_A SINE Alu 2 124 -9 519 260 8 0 chr9 3700810 3700937 -114161690 + MLT1L LTR MaLR 430 557 -58 195 129 0 0 chr9 3701187 3701218 -114161409 + (T)n Simple_repeat Simple_repeat 1 31 0 2036 98 7 11 chr9 3701221 3701498 -114161129 - AluSx SINE Alu 0 312 37 387 316 193 30 chr9 3702500 3702769 -114159858 - L3 LINE CR1 -85 1492 1180 348 316 72 24 chr9 3702861 3703234 -114159393 + L1MC4 LINE L1 7098 7488 -554 381 203 127 0 chr9 3703404 3703522 -114159105 + L1ME4a LINE L1 5977 6109 -12 250 387 34 42 chr9 3703574 3703812 -114158815 - L3 LINE CR1 -400 1177 942 502 316 17 11 chr9 3703869 3704043 -114158584 + MIR SINE MIR 87 261 -1 380 248 46 9 chr9 3705041 3705150 -114157477 - MLT1L LTR MaLR -339 276 164 2313 86 14 0 chr9 3705405 3705696 -114156931 - AluSx SINE Alu -17 295 1 270 355 118 0 chr9 3706226 3706319 -114156308 + MIR SINE MIR 31 134 -74 298 324 88 99 chr9 3706345 3706811 -114155816 - L2 LINE L2 0 3272 2812 207 162 0 0 chr9 3707353 3707390 -114155237 + CT-rich Low_complexity Low_complexity 3 39 0 1681 235 54 7 chr9 3708235 3708640 -114153987 + MER45B DNA AcHobo 1 424 -616 5242 120 24 14 chr9 3708640 3709589 -114153038 + L1MA8 LINE L1 5195 6154 -137 5864 110 12 0 chr9 3709601 3710550 -114152077 - L1PA8 LINE L1 -758 5388 4429 6002 68 2 9 chr9 3710550 3711331 -114151296 + L1PA8 LINE L1 5388 6492 -209 2304 107 0 3 chr9 3711331 3711640 -114150987 + AluSc SINE Alu 1 308 -1 6002 68 2 9 chr9 3711640 3711849 -114150778 + L1PA8 LINE L1 6492 6701 0 2689 164 91 2 chr9 3711857 3712404 -114150223 + MER45B DNA AcHobo 411 1006 -34 1045 45 8 0 chr9 3712481 3712613 -114150014 - L1PA7 LINE L1 -4 6150 6018 384 109 0 0 chr9 3712613 3712668 -114149959 + MER45B DNA AcHobo 984 1038 -2 1687 178 16 3 chr9 3712818 3713178 -114149449 + L1PB4 LINE L1 5812 6175 0 184 234 0 64 chr9 3713319 3713366 -114149261 + L2 LINE L2 3213 3256 -16 871 269 98 52 chr9 3713677 3714138 -114148489 - MLT1J LTR MaLR -8 503 22 2097 120 3 3 chr9 3714382 3714683 -114147944 - AluSx SINE Alu -6 306 6 376 330 28 0 chr9 3714797 3714906 -114147721 - MER5A DNA MER1_type -10 179 68 342 0 0 0 chr9 3716982 3717020 -114145607 + (TA)n Simple_repeat Simple_repeat 2 39 0 225 277 0 0 chr9 3718608 3718673 -114143954 + MLT1K LTR MaLR 519 583 -5 183 309 79 63 chr9 3718824 3718950 -114143677 - MIR SINE MIR 0 262 135 256 282 70 0 chr9 3719316 3719387 -114143240 - MIR SINE MIR -79 129 54 696 225 22 0 chr9 3719433 3719571 -114143056 - MER5A DNA MER1_type -29 160 20 24 32 0 0 chr9 3720419 3720450 -114142177 + AT_rich Low_complexity Low_complexity 1 31 0 1585 150 132 6 chr9 3720783 3721116 -114141511 + THE1C LTR MaLR 1 375 0 200 343 159 17 chr9 3721425 3721597 -114141030 - MIR3 SINE MIR -64 198 4 12765 180 40 47 chr9 3721615 3723508 -114139119 - L1MA4A LINE L1 0 7365 5460 180 0 0 0 chr9 3723508 3723528 -114139099 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 12765 180 40 47 chr9 3723528 3726196 -114136431 - L1MA4A LINE L1 -1905 5460 2646 1319 102 11 0 chr9 3726196 3726373 -114136254 - AluSp SINE Alu -3 310 132 12765 180 40 47 chr9 3726373 3728295 -114134332 - L1MA4A LINE L1 -4719 2646 712 1840 274 72 31 chr9 3728684 3729393 -114133234 - L1MA4A LINE L1 -6471 738 1 182 340 0 0 chr9 3729672 3729725 -114132902 - L2 LINE L2 0 3313 3261 301 200 60 184 chr9 3729768 3729953 -114132674 - MER5B DNA MER1_type 0 178 17 341 0 0 43 chr9 3730170 3730216 -114132411 + (CATTA)n Simple_repeat Simple_repeat 4 47 0 213 154 0 0 chr9 3730237 3730276 -114132351 + (TG)n Simple_repeat Simple_repeat 1 39 0 260 269 0 0 chr9 3730428 3730480 -114132147 - MIR3 SINE MIR -34 174 123 231 167 0 0 chr9 3731073 3731115 -114131512 + (CTG)n Simple_repeat Simple_repeat 1 42 0 477 300 170 0 chr9 3731462 3731662 -114130965 + MIR SINE MIR 29 262 0 416 244 64 32 chr9 3732123 3732279 -114130348 - MLT1J LTR MaLR -23 488 328 2239 109 7 7 chr9 3732686 3732990 -114129637 - AluSc SINE Alu -5 304 1 31 26 0 0 chr9 3733023 3733061 -114129566 + AT_rich Low_complexity Low_complexity 1 38 0 250 316 0 0 chr9 3733151 3733227 -114129400 + L1ME LINE L1 176 251 -5954 517 330 100 45 chr9 3733523 3734102 -114128525 + L1ME LINE L1 567 1177 -5028 489 304 35 3 chr9 3734128 3734417 -114128210 + L1ME LINE L1 1259 1556 -4840 207 0 0 0 chr9 3734451 3734474 -114128153 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1639 268 151 20 chr9 3734559 3736056 -114126571 + L1ME LINE L1 2169 3825 -2390 303 259 259 26 chr9 3736104 3736293 -114126334 + L1ME LINE L1 3998 4230 -1985 1796 107 40 10 chr9 3736294 3736593 -114126034 + L1PB2 LINE L1 5722 6037 -114 728 280 83 34 chr9 3736591 3737145 -114125482 + L1ME LINE L1 4569 5149 -1066 * 349 299 75 7 chr9 3738171 3738318 -114124309 + MIR SINE MIR 105 261 -1 1946 97 19 58 chr9 3738454 3738617 -114124010 - AluSg1 SINE Alu -9 300 132 239 0 0 31 chr9 3738617 3738649 -114123978 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1946 97 19 58 chr9 3738649 3738665 -114123962 - AluSg1 SINE Alu -177 132 117 2604 33 0 0 chr9 3738665 3738969 -114123658 - AluYb8 SINE Alu -14 304 1 1946 97 19 58 chr9 3738969 3739099 -114123528 - AluSg1 SINE Alu -192 117 2 749 210 26 65 chr9 3739462 3739691 -114122936 + MER112 DNA MER1_type 1 220 -40 279 233 106 100 chr9 3740130 3740291 -114122336 - MIR SINE MIR -57 205 45 186 43 0 0 chr9 3740433 3740456 -114122171 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1560 200 82 43 chr9 3742449 3742935 -114119692 - MLT1D LTR MaLR 0 505 1 465 250 22 71 chr9 3743027 3743211 -114119416 - MER5B DNA MER1_type -3 175 1 273 198 0 0 chr9 3745608 3745689 -114116938 + (CA)n Simple_repeat Simple_repeat 1 81 0 260 286 58 39 chr9 3746011 3746217 -114116410 + LTR16B LTR ERVL 4 213 -251 497 246 128 45 chr9 3748163 3748561 -114114066 - L1ME4a LINE L1 -4 6117 5687 1594 278 154 88 chr9 3749794 3750843 -114111784 - L2 LINE L2 0 3313 2334 204 40 0 0 chr9 3750843 3750868 -114111759 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 1594 278 154 88 chr9 3750868 3751005 -114111622 - L2 LINE L2 -979 2334 2207 553 234 16 0 chr9 3751005 3751129 -114111498 + MER94 DNA DNA 9 134 0 1594 278 154 88 chr9 3751129 3751560 -114111067 - L2 LINE L2 -1106 2207 1442 251 281 157 0 chr9 3751968 3752054 -114110573 + MIR SINE MIR 55 149 -59 2214 120 0 0 chr9 3753003 3753302 -114109325 - AluSx SINE Alu -13 299 1 295 337 61 0 chr9 3754462 3754560 -114108067 - L2 LINE L2 0 3272 3169 21 0 0 0 chr9 3754560 3754581 -114108046 + AT_rich Low_complexity Low_complexity 1 21 0 2745 74 21 5 chr9 3754581 3754959 -114107668 - L1PA10 LINE L1 0 6168 5785 215 271 0 0 chr9 3755169 3755228 -114107399 - L2 LINE L2 -298 2974 2916 2359 98 0 0 chr9 3755246 3755541 -114107086 + AluSg SINE Alu 1 295 -15 32 26 0 0 chr9 3755580 3755619 -114107008 + AT_rich Low_complexity Low_complexity 1 39 0 1056 183 18 22 chr9 3755743 3755972 -114106655 + MER96B DNA MER1_type? 190 417 0 208 167 0 0 chr9 3756426 3756462 -114106165 + L2 LINE L2 3273 3308 -5 2259 116 0 3 chr9 3757735 3758045 -114104582 - AluSx SINE Alu -3 309 1 2306 99 0 10 chr9 3758410 3758714 -114103913 - AluSq SINE Alu -12 301 1 2701 194 98 17 chr9 3759397 3759439 -114103188 + MER63C DNA MER1_type 11 48 -1012 267 31 0 0 chr9 3759439 3759471 -114103156 + (CA)n Simple_repeat Simple_repeat 2 33 0 2701 194 98 17 chr9 3759471 3760181 -114102446 + MER63C DNA MER1_type 48 824 -106 938 201 6 0 chr9 3760181 3760345 -114102282 - FRAM SINE Alu -7 169 5 415 234 21 0 chr9 3760349 3760443 -114102184 + MER63C DNA MER1_type 817 912 -18 297 279 77 93 chr9 3760504 3760751 -114101876 + MLT1J LTR MaLR 1 243 -268 382 182 130 71 chr9 3760797 3760951 -114101676 - MLT1J2 LTR MaLR -22 428 266 863 200 12 0 chr9 3761114 3761284 -114101343 - Tigger1 DNA MER2_type -2246 172 1 1327 190 0 4 chr9 3761381 3761607 -114101020 + AluJo SINE Alu 84 308 -4 1606 159 36 47 chr9 3762398 3762678 -114099949 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr9 3762678 3762699 -114099928 + AT_rich Low_complexity Low_complexity 1 21 0 2405 80 7 0 chr9 3762883 3763184 -114099443 - AluSq SINE Alu -10 303 1 245 259 0 0 chr9 3763754 3763808 -114098819 + (TG)n Simple_repeat Simple_repeat 2 55 0 879 201 6 22 chr9 3763808 3763835 -114098792 - MER45A DNA AcHobo -1404 177 151 7613 27 0 0 chr9 3763835 3765230 -114097397 + L1PA4 LINE L1 4757 6152 -3 879 201 6 22 chr9 3765230 3765381 -114097246 - MER45A DNA AcHobo -1430 151 2 344 306 27 55 chr9 3765568 3765751 -114096876 + MIR SINE MIR 56 233 -29 21 36 0 0 chr9 3766596 3766624 -114096003 + AT_rich Low_complexity Low_complexity 1 28 0 407 316 21 16 chr9 3767981 3768168 -114094459 + MER117 DNA MER1_type 10 197 0 221 277 121 48 chr9 3768318 3768484 -114094143 - MIR SINE MIR 0 262 85 284 102 20 0 chr9 3771571 3771620 -114091007 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 998 216 50 0 chr9 3772117 3772339 -114090288 - MIR SINE MIR -8 254 22 185 387 40 0 chr9 3772378 3772453 -114090174 - L3 LINE CR1 -92 1485 1408 685 269 97 36 chr9 3772552 3772942 -114089685 - LTR16C LTR ERVL -18 473 60 980 175 6 0 chr9 3773077 3773243 -114089384 + MER5A DNA MER1_type 1 167 -22 567 275 86 57 chr9 3773433 3773840 -114088787 - MLT1J LTR MaLR -23 488 70 2357 93 0 0 chr9 3775126 3775427 -114087200 + AluY SINE Alu 1 301 -10 735 272 68 36 chr9 3775896 3776146 -114086481 + MIR SINE MIR 4 261 -1 275 292 358 0 chr9 3776321 3776458 -114086169 - MER5A DNA MER1_type 0 189 4 291 306 150 25 chr9 3776471 3776631 -114085996 + MIR SINE MIR 53 232 -30 1807 127 33 7 chr9 3776726 3777063 -114085564 + AluSx SINE Alu 1 344 0 1150 224 37 104 chr9 3777312 3777688 -114084939 + L1MEc LINE L1 36 373 -6023 2185 92 3 10 chr9 3777688 3777992 -114084635 + AluSx SINE Alu 1 302 -10 1150 224 37 104 chr9 3777992 3778105 -114084522 + L1MEc LINE L1 373 492 -5904 910 228 0 0 chr9 3778106 3778264 -114084363 + FRAM SINE Alu 1 157 -19 1920 216 145 8 chr9 3778296 3778943 -114083684 + L1MEc LINE L1 518 1253 -5143 1459 216 62 55 chr9 3778944 3779023 -114083604 + L1MEc LINE L1 1759 1836 -4560 1869 176 3 6 chr9 3779023 3779336 -114083291 - AluJb SINE Alu 0 312 1 1459 216 62 55 chr9 3779336 3779488 -114083139 + L1MEc LINE L1 1836 1985 -4411 1884 185 0 6 chr9 3779488 3779802 -114082825 - AluJo SINE Alu 0 312 1 1459 216 62 55 chr9 3779802 3780134 -114082493 + L1MEc LINE L1 1985 2327 -4069 * 3397 231 57 65 chr9 3780132 3781480 -114081147 + L1MEc LINE L1 2966 4297 -1918 1657 105 24 0 chr9 3781480 3781728 -114080899 + L1PA10 LINE L1 5915 6168 0 3397 231 57 65 chr9 3781728 3782092 -114080535 + L1MEc LINE L1 4297 4663 -1552 18766 157 46 25 chr9 3782098 3788948 -114073679 + L1M1 LINE L1 18 7008 -713 288 0 0 0 chr9 3789243 3789275 -114073352 + (A)n Simple_repeat Simple_repeat 1 32 0 1438 243 130 18 chr9 3789655 3790302 -114072325 + L2 LINE L2 2565 3311 -2 214 167 0 0 chr9 3790782 3790818 -114071809 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 3790981 3791033 -114071594 + AT_rich Low_complexity Low_complexity 1 52 0 643 277 116 55 chr9 3791129 3791855 -114070772 - L1MC4 LINE L1 -143 7899 7130 351 44 0 0 chr9 3791857 3791902 -114070725 + (TG)n Simple_repeat Simple_repeat 2 46 0 878 248 28 88 chr9 3792051 3792293 -114070334 - L1MC4 LINE L1 -981 7061 6849 2179 118 7 0 chr9 3792293 3792582 -114070045 - AluSx SINE Alu -21 291 1 878 248 28 88 chr9 3792582 3792726 -114069901 - L1MC4 LINE L1 -1193 6849 6698 206 229 147 83 chr9 3792966 3793075 -114069552 - MIR SINE MIR -70 138 23 5332 156 14 6 chr9 3793150 3794845 -114067782 + L1PA15 LINE L1 4309 6164 -1 963 177 23 0 chr9 3794982 3795157 -114067470 + MER5A DNA MER1_type 8 186 -3 227 313 31 0 chr9 3795608 3795672 -114066955 + MIR SINE MIR 119 184 -78 310 344 81 12 chr9 3796197 3796444 -114066183 + L2 LINE L2 2199 2462 -852 319 220 11 33 chr9 3796635 3796726 -114065901 - MIR SINE MIR -1 261 173 217 345 116 34 chr9 3796690 3797042 -114065585 + L2 LINE L2 2672 3059 -213 * 383 354 186 11 chr9 3797295 3797676 -114064951 - L2 LINE L2 0 3272 2825 1866 164 7 0 chr9 3798021 3798331 -114064296 + AluSx SINE Alu 1 312 0 1659 160 19 0 chr9 3798557 3798826 -114063801 - AluSx SINE Alu -38 274 1 313 343 56 9 chr9 3799485 3799593 -114063034 - MIR3 SINE MIR -93 115 3 1498 196 31 10 chr9 3799840 3800131 -114062496 - AluJo SINE Alu -15 297 1 360 298 158 35 chr9 3800669 3800840 -114061787 + MIR3 SINE MIR 3 194 -14 1691 195 36 28 chr9 3801063 3801452 -114061175 - MSTD LTR MaLR -4 392 1 4248 127 46 29 chr9 3803217 3804570 -114058057 + pTR5 LTR ERV1 738 2438 0 364 267 59 0 chr9 3804711 3804812 -114057815 - MIR3 SINE MIR -15 193 87 2343 87 23 0 chr9 3805152 3805452 -114057175 - AluSq SINE Alu -6 307 1 243 88 0 0 chr9 3806080 3806114 -114056513 + (TG)n Simple_repeat Simple_repeat 2 35 0 617 309 168 23 chr9 3806472 3806870 -114055757 + L3 LINE CR1 1101 1556 -21 780 286 61 12 chr9 3807156 3807595 -114055032 - MLT1J LTR MaLR -23 488 7 22 35 0 0 chr9 3807770 3807799 -114054828 + AT_rich Low_complexity Low_complexity 1 29 0 282 338 135 24 chr9 3808515 3808722 -114053905 - MIR SINE MIR -16 246 17 246 183 9 148 chr9 3808906 3808962 -114053665 - MLT1L LTR MaLR -6 609 575 1147 170 5 0 chr9 3808962 3809150 -114053477 + MER5A DNA MER1_type 1 189 0 246 183 9 148 chr9 3809150 3809208 -114053419 - MLT1L LTR MaLR -40 575 511 591 269 36 5 chr9 3809324 3809517 -114053110 - MLT1L LTR MaLR -289 326 128 369 308 38 8 chr9 3810619 3810752 -114051875 + MIR3 SINE MIR 49 185 -23 542 254 37 0 chr9 3810809 3810943 -114051684 + MIR SINE MIR 47 185 -77 618 193 107 0 chr9 3811201 3811351 -114051276 - MER5A DNA MER1_type -10 179 14 402 299 21 35 chr9 3811363 3811507 -114051120 - MER5A DNA MER1_type -28 161 20 281 237 0 118 chr9 3812019 3812112 -114050515 - MIR SINE MIR 0 262 181 1498 139 12 8 chr9 3812356 3812600 -114050027 + THE1B LTR MaLR 120 364 0 1045 266 39 53 chr9 3812629 3813043 -114049584 + MER20B DNA MER1_type 100 507 -276 296 279 0 0 chr9 3813055 3813134 -114049493 + (TA)n Simple_repeat Simple_repeat 1 79 0 886 246 14 7 chr9 3813207 3813483 -114049144 + MER20B DNA MER1_type 505 782 -1 325 350 72 6 chr9 3814052 3814232 -114048395 - MIR SINE MIR -50 212 21 763 270 178 14 chr9 3814496 3814918 -114047709 + MLT1H1 LTR MaLR 32 522 -33 189 0 0 0 chr9 3815283 3815304 -114047323 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 757 142 0 0 chr9 3815307 3815413 -114047214 - AluSx SINE Alu -23 289 184 1354 95 5 37 chr9 3815495 3815685 -114046942 - AluSx SINE Alu -128 184 1 357 291 56 56 chr9 3817312 3817563 -114045064 + L2 LINE L2 2271 2521 -793 1866 146 17 0 chr9 3817987 3818289 -114044338 + AluSx SINE Alu 1 307 -5 744 199 8 0 chr9 3818414 3818545 -114044082 - FLAM_A SINE Alu -1 132 1 1180 270 81 18 chr9 3818935 3819331 -114043296 + L1ME3A LINE L1 5486 5906 -264 2332 80 22 14 chr9 3819332 3819681 -114042946 + LTR7 LTR ERV1 1 448 -2 338 209 82 77 chr9 3819723 3819919 -114042708 + L1ME3A LINE L1 5903 6099 -71 1706 152 35 7 chr9 3819941 3820224 -114042403 - AluJb SINE Alu -21 291 1 249 108 0 0 chr9 3820302 3820339 -114042288 + (GA)n Simple_repeat Simple_repeat 2 38 0 583 114 13 0 chr9 3821687 3821766 -114040861 + MADE1 DNA Mariner 1 80 0 250 161 70 119 chr9 3821846 3821989 -114040638 - L1ME4a LINE L1 -11 6110 5975 2177 132 3 0 chr9 3823419 3823730 -114038897 - AluSx SINE Alu 0 312 1 26 0 0 0 chr9 3823730 3823756 -114038871 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr9 3824418 3824460 -114038167 + AT_rich Low_complexity Low_complexity 1 42 0 2262 77 3 46 chr9 3824990 3825315 -114037312 - AluY SINE Alu 0 311 1 1741 176 137 56 chr9 3825705 3826172 -114036455 - MLT1D LTR MaLR 0 505 1 212 263 0 0 chr9 3826529 3826586 -114036041 + (CATA)n Simple_repeat Simple_repeat 4 60 0 499 289 19 120 chr9 3826614 3826720 -114035907 - L2 LINE L2 -199 3114 2999 2236 125 0 0 chr9 3826720 3827023 -114035604 + AluSx SINE Alu 1 303 -9 499 289 19 120 chr9 3827023 3827182 -114035445 - L2 LINE L2 -314 2999 2876 941 245 54 113 chr9 3827269 3827845 -114034782 + MER34 LTR ERV1 1 542 0 240 287 298 0 chr9 3827931 3828025 -114034602 - MIR SINE MIR -115 147 26 384 194 87 0 chr9 3828371 3828474 -114034153 + MER104 DNA Tc2 6 117 -63 1909 114 13 40 chr9 3830704 3831002 -114031625 + AluSx SINE Alu 1 290 -22 310 171 126 54 chr9 3832106 3832217 -114030410 + LTR41 LTR ERVL 5 123 -650 3105 168 42 32 chr9 3832268 3832883 -114029744 - L1MB7 LINE L1 -42 6142 5522 722 249 37 11 chr9 3832884 3833073 -114029554 - MLT1A2 LTR MaLR 0 374 181 1963 288 53 80 chr9 3833089 3834103 -114028524 - L1M4 LINE L1 -1299 4847 3807 270 0 0 0 chr9 3834103 3834133 -114028494 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1982 122 3 14 chr9 3834140 3834428 -114028199 - AluSc SINE Alu -24 285 1 1963 288 53 80 chr9 3834428 3835091 -114027536 - L1M4 LINE L1 -2345 3801 3209 642 190 50 50 chr9 3835129 3835308 -114027319 + LTR41 LTR ERVL 585 763 -10 289 344 21 91 chr9 3835339 3835769 -114026858 + L2 LINE L2 2533 2932 -382 989 313 56 36 chr9 3836294 3836795 -114025832 - LTR33 LTR ERVL -8 513 3 22 35 0 0 chr9 3836839 3836868 -114025759 + AT_rich Low_complexity Low_complexity 1 29 0 331 213 0 0 chr9 3837588 3837649 -114024978 - L2 LINE L2 -1 3271 3211 316 328 50 0 chr9 3837980 3838099 -114024528 - MIR SINE MIR -108 154 30 192 186 0 47 chr9 3838322 3838365 -114024262 + L2 LINE L2 3229 3269 -3 977 220 113 50 chr9 3839234 3839598 -114023029 + LTR33A LTR ERVL 137 523 0 788 283 75 24 chr9 3839981 3840274 -114022353 - MLT1K LTR MaLR -4 584 277 405 399 0 0 chr9 3840452 3840590 -114022037 + MIR3 SINE MIR 19 156 -52 180 262 0 0 chr9 3840770 3840812 -114021815 + MIR3 SINE MIR 150 191 -17 202 264 43 71 chr9 3841762 3841902 -114020725 - L2 LINE L2 -188 3084 2949 1193 288 48 32 chr9 3842016 3842784 -114019843 + L2 LINE L2 2522 3306 -7 851 244 11 0 chr9 3844380 3844556 -114018071 - MER5A DNA MER1_type -5 184 7 599 250 62 82 chr9 3844797 3845041 -114017586 - MLT1K LTR MaLR -2 586 348 332 371 16 8 chr9 3847528 3847652 -114014975 - MIR SINE MIR -63 145 21 573 197 28 35 chr9 3848890 3849032 -114013595 + MER5B DNA MER1_type 35 175 -3 403 292 78 31 chr9 3849033 3849219 -114013408 + MIR SINE MIR 35 227 -35 1655 149 8 4 chr9 3849509 3849771 -114012856 + AluSx SINE Alu 32 294 -18 22 35 0 0 chr9 3849772 3849801 -114012826 + AT_rich Low_complexity Low_complexity 1 29 0 319 161 0 0 chr9 3849864 3849920 -114012707 - Alu SINE Alu -1 299 244 2918 6 0 0 chr9 3850079 3850390 -114012237 + AluY SINE Alu 1 311 0 245 326 57 17 chr9 3850406 3850581 -114012046 - MLT1J LTR MaLR 0 511 330 802 296 93 51 chr9 3850899 3851406 -114011221 - LTR67 LTR ERVL 0 557 30 242 139 0 0 chr9 3851480 3851516 -114011111 - MIR SINE MIR -62 146 111 434 280 70 33 chr9 3851523 3851794 -114010833 + L1MC4a LINE L1 5629 5909 -1899 1708 130 7 29 chr9 3851917 3852194 -114010433 + Tigger5 DNA MER2_type 2052 2322 -1 309 51 0 0 chr9 3852205 3852244 -114010383 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 200 104 32 chr9 3852254 3852379 -114010248 + L1ME4a LINE L1 5985 6118 -3 201 191 0 24 chr9 3853788 3853830 -114008797 + T-rich Low_complexity Low_complexity 2 42 0 699 250 101 48 chr9 3853972 3854220 -114008407 + MIR SINE MIR 2 262 0 180 183 14 42 chr9 3854927 3854938 -114007689 + CT-rich Low_complexity Low_complexity 4 14 -58 1259 225 78 52 chr9 3854938 3855324 -114007303 - MSTD LTR MaLR 0 396 1 180 183 14 42 chr9 3855324 3855383 -114007244 + CT-rich Low_complexity Low_complexity 14 72 0 596 132 9 0 chr9 3855473 3855579 -114007048 + C-rich Low_complexity Low_complexity 5 111 0 2604 86 44 17 chr9 3856019 3856381 -114006246 - THE1C LTR MaLR 0 375 4 10152 98 46 47 chr9 3856384 3857654 -114004973 - THE1C-int LTR MaLR 0 1580 310 2357 127 48 20 chr9 3857654 3858008 -114004619 + THE1B LTR MaLR 1 364 0 12584 93 4 0 chr9 3858008 3859582 -114003045 + THE1B-int LTR MaLR 1 1580 0 2203 145 54 20 chr9 3859582 3859934 -114002693 + THE1B LTR MaLR 1 364 0 10152 98 46 47 chr9 3859934 3860243 -114002384 - THE1C-int LTR MaLR -1267 313 1 2944 96 5 16 chr9 3860245 3860622 -114002005 - THE1C LTR MaLR -2 373 1 266 197 28 155 chr9 3861025 3861167 -114001460 + LTR67 LTR ERVL 434 557 0 2803 136 13 75 chr9 3862101 3862624 -114000003 + L1MB3 LINE L1 5693 6183 0 415 276 104 8 chr9 3862921 3863055 -113999572 - MIR SINE MIR -65 197 51 257 366 67 8 chr9 3864376 3864510 -113998117 + MIR3 SINE MIR 19 160 -48 182 37 37 0 chr9 3865971 3865998 -113996629 + (CAATT)n Simple_repeat Simple_repeat 1 28 0 368 243 54 45 chr9 3866005 3866116 -113996511 - L2 LINE L2 -22 3250 3139 686 184 171 13 chr9 3866887 3867045 -113995582 + MER5A DNA MER1_type 7 189 0 184 195 0 24 chr9 3867045 3867084 -113995543 - MIR SINE MIR -64 198 161 213 277 0 0 chr9 3867315 3867362 -113995265 + (CACG)n Simple_repeat Simple_repeat 1 47 0 183 129 0 0 chr9 3867802 3867833 -113994794 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 183 200 60 60 chr9 3867909 3867959 -113994668 + L2 LINE L2 3222 3271 -1 1257 278 75 63 chr9 3868976 3869119 -113993508 - L1ME3A LINE L1 -144 6262 6122 2020 152 66 23 chr9 3869119 3869468 -113993159 + MER47A DNA MER2_type 2 365 -1 1257 278 75 63 chr9 3869468 3869600 -113993027 - L1ME3A LINE L1 -284 6122 5993 16839 146 35 8 chr9 3869600 3869957 -113992670 + Tigger4(Zombi) DNA MER2_type 1 347 -2384 195 100 0 0 chr9 3869957 3869987 -113992640 + (TTG)n Simple_repeat Simple_repeat 1 30 0 16839 146 35 8 chr9 3869987 3872290 -113990337 + Tigger4(Zombi) DNA MER2_type 347 2731 0 1257 278 75 63 chr9 3872290 3872545 -113990082 - L1ME3A LINE L1 -413 5993 5743 1354 156 138 86 chr9 3872545 3872733 -113989894 - MER2 DNA MER2_type 0 344 129 1691 133 94 0 chr9 3872733 3873010 -113989617 + AluSx SINE Alu 5 305 0 1354 156 138 86 chr9 3873010 3873147 -113989480 - MER2 DNA MER2_type -215 129 1 1257 278 75 63 chr9 3873147 3874453 -113988174 - L1ME3A LINE L1 -663 5743 4402 26 21 0 42 chr9 3874629 3874644 -113987983 + AT_rich Low_complexity Low_complexity 1 15 -31 2524 38 0 0 chr9 3874644 3874934 -113987693 - AluY SINE Alu -21 290 1 26 21 0 42 chr9 3874934 3874966 -113987661 + AT_rich Low_complexity Low_complexity 15 46 0 552 267 74 20 chr9 3875130 3875332 -113987295 + MLT1I LTR MaLR 3 215 -194 518 258 60 56 chr9 3875472 3876047 -113986580 - L1ME3A LINE L1 -3518 2864 2287 344 290 44 47 chr9 3876033 3876630 -113985997 - HAL1b LINE L1 -885 1165 1077 * 236 286 60 23 chr9 3877497 3877630 -113984997 - L1M4 LINE L1 -1978 4168 4031 1227 42 56 0 chr9 3877936 3878080 -113984547 - L1PA8 LINE L1 -14 6158 6007 290 276 81 0 chr9 3879704 3879791 -113982836 - MIR SINE MIR -77 185 92 188 348 73 39 chr9 3880159 3880337 -113982290 + MIR3 SINE MIR 15 198 -10 2861 72 119 5 chr9 3880345 3880747 -113981880 - LTR7 LTR ERV1 -2 448 1 2254 107 62 16 chr9 3880747 3881120 -113981507 - HERVH LTR ERV1 0 7713 7324 1390 134 19 0 chr9 3881120 3881336 -113981291 - HERVH LTR ERV1 -1894 5819 5600 3808 145 2 2 chr9 3881340 3881912 -113980715 - HERVH LTR ERV1 -2567 5146 4575 1334 104 0 0 chr9 3881909 3882092 -113980535 - HERVH LTR ERV1 -3043 4670 4488 * 6451 69 2 2 chr9 3882094 3882948 -113979679 - HERVH LTR ERV1 -3720 3993 3140 * 16180 92 21 25 chr9 3882934 3885810 -113976817 - HERVH LTR ERV1 -4721 2992 1 2638 73 128 5 chr9 3885812 3886211 -113976416 - LTR7 LTR ERV1 -2 448 1 2491 248 65 44 chr9 3886848 3887525 -113975102 - MER115 DNA AcHobo 0 693 3 213 39 0 0 chr9 3888031 3888057 -113974570 + (CA)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr9 3888129 3888169 -113974458 + (TG)n Simple_repeat Simple_repeat 1 40 0 401 306 91 39 chr9 3888482 3888714 -113973913 + LTR16A LTR ERVL 201 444 -6 310 184 0 105 chr9 3888805 3888881 -113973746 + L2 LINE L2 3246 3313 0 2435 162 77 46 chr9 3889398 3889986 -113972641 - L1MB4 LINE L1 -6 6174 5569 528 239 34 0 chr9 3890047 3890164 -113972463 - MER103 DNA DNA -44 122 2 295 239 27 133 chr9 3890339 3890527 -113972100 + L2 LINE L2 2917 3084 -188 371 266 40 102 chr9 3890607 3890784 -113971843 - MER5A DNA MER1_type -12 177 12 203 170 21 0 chr9 3890851 3890898 -113971729 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 185 234 0 0 chr9 3890902 3890949 -113971678 + MIR3 SINE MIR 121 167 -41 1545 176 54 57 chr9 3891916 3892252 -113970375 + MER58B DNA MER1_type 6 340 -1 1035 254 86 84 chr9 3892327 3892885 -113969742 - L1ME3A LINE L1 -75 6095 5537 234 0 0 0 chr9 3893056 3893082 -113969545 + (A)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chr9 3893832 3893858 -113968769 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr9 3894366 3894387 -113968240 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 3894759 3894781 -113967846 + AT_rich Low_complexity Low_complexity 1 22 0 367 353 85 34 chr9 3898188 3898599 -113964028 - L2 LINE L2 -338 2976 2545 318 294 105 14 chr9 3899885 3900028 -113962599 + MIR SINE MIR 107 262 0 803 327 55 35 chr9 3900738 3901334 -113961293 + L1ME4a LINE L1 5309 5916 -205 847 192 66 6 chr9 3901435 3901617 -113961010 + MIR SINE MIR 7 199 -63 48 77 0 0 chr9 3901621 3901725 -113960902 + AT_rich Low_complexity Low_complexity 1 104 0 1135 168 73 0 chr9 3903791 3903982 -113958645 + MER3 DNA MER1_type 5 209 0 272 302 16 48 chr9 3905078 3905204 -113957423 + MIR SINE MIR 135 256 -6 376 301 62 0 chr9 3905274 3905387 -113957240 - L2 LINE L2 -34 3279 3160 5001 150 53 15 chr9 3906682 3907529 -113955098 + L1MC1 LINE L1 5449 6327 -6 618 278 0 13 chr9 3907542 3907693 -113954934 + L2 LINE L2 3165 3313 0 343 309 82 31 chr9 3908918 3909112 -113953515 - MIR SINE MIR -6 256 53 194 343 187 6 chr9 3909450 3909616 -113953011 + MIR SINE MIR 49 244 -18 375 245 68 54 chr9 3910767 3910914 -113951713 + MIR SINE MIR 6 154 -108 2042 130 0 0 chr9 3911637 3911922 -113950705 + AluSg SINE Alu 1 285 -25 223 265 163 31 chr9 3912086 3912184 -113950443 + MER5A DNA MER1_type 35 145 -44 238 237 51 17 chr9 3913012 3913071 -113949556 - L2 LINE L2 -3 3310 3250 551 300 119 83 chr9 3914246 3914766 -113947861 + L1MC4a LINE L1 5373 5677 -444 261 182 0 0 chr9 3915156 3915211 -113947416 + (CA)n Simple_repeat Simple_repeat 2 56 0 609 288 79 14 chr9 3915292 3915507 -113947120 + MIR SINE MIR 2 230 -32 284 278 121 10 chr9 3915737 3915850 -113946777 + MIR SINE MIR 28 159 -49 2044 129 0 0 chr9 3916347 3916678 -113945949 + AluSx SINE Alu 1 331 0 2385 92 0 3 chr9 3917664 3917978 -113944649 + AluSq SINE Alu 1 313 0 180 182 0 0 chr9 3918693 3918726 -113943901 - MIR SINE MIR -107 155 123 393 343 9 23 chr9 3918854 3919070 -113943557 + MLT1J LTR MaLR 217 429 -82 2178 119 0 3 chr9 3919071 3919366 -113943261 + AluSx SINE Alu 1 294 -18 280 287 47 62 chr9 3920120 3920418 -113942209 + L2 LINE L2 2785 3078 -194 2109 134 0 7 chr9 3921306 3921611 -113941016 + AluSx SINE Alu 1 303 -9 1735 168 25 14 chr9 3922371 3922656 -113939971 + AluJo SINE Alu 1 288 -24 247 350 121 7 chr9 3922846 3922986 -113939641 - L2 LINE L2 -2 3311 3156 208 331 221 17 chr9 3922982 3923163 -113939464 - MIR SINE MIR -13 249 32 * 399 191 56 0 chr9 3923184 3923273 -113939354 - L1ME4a LINE L1 -65 6056 5963 589 221 61 31 chr9 3923340 3923503 -113939124 - MER104 DNA Tc2 -4 176 9 233 254 111 71 chr9 3923613 3923739 -113938888 + L2 LINE L2 3142 3272 0 2308 86 0 26 chr9 3923986 3924289 -113938338 - AluY SINE Alu -16 295 1 219 339 95 37 chr9 3924925 3925114 -113937513 - L2 LINE L2 -122 3150 2951 459 0 0 0 chr9 3928796 3928847 -113933780 + (CA)n Simple_repeat Simple_repeat 2 52 0 2443 84 7 0 chr9 3929439 3929748 -113932879 + AluY SINE Alu 1 311 0 219 349 18 37 chr9 3930072 3930181 -113932446 + MIR SINE MIR 21 127 -135 508 306 79 24 chr9 3930238 3930490 -113932137 - L2 LINE L2 0 3313 3048 4583 72 19 60 chr9 3930741 3931409 -113931218 + L1PA10 LINE L1 5528 6168 0 324 273 127 11 chr9 3931533 3931651 -113930976 - MIR3 SINE MIR -3 205 73 295 291 87 44 chr9 3935573 3935779 -113926848 - L2 LINE L2 0 3313 3099 976 71 16 0 chr9 3935788 3935914 -113926713 + AluY SINE Alu 165 292 -19 983 275 83 48 chr9 3935938 3936537 -113926090 - L2 LINE L2 -244 3069 2445 215 61 30 0 chr9 3936667 3936700 -113925927 + (TTG)n Simple_repeat Simple_repeat 2 35 0 399 113 0 0 chr9 3937160 3937222 -113925405 + (TG)n Simple_repeat Simple_repeat 1 62 0 476 300 52 67 chr9 3938353 3938563 -113924064 + L2 LINE L2 3030 3236 -36 252 0 0 0 chr9 3938711 3938739 -113923888 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 367 69 49 chr9 3939182 3939487 -113923140 - L2 LINE L2 -47 3225 2915 2086 177 61 34 chr9 3939639 3939868 -113922759 + L1MA4A LINE L1 2729 2950 -3353 2177 134 19 46 chr9 3939868 3940240 -113922387 - THE1B LTR MaLR 0 364 3 12426 98 4 4 chr9 3940242 3941823 -113920804 - THE1B-int LTR MaLR 0 1580 1 1913 150 33 46 chr9 3941825 3942192 -113920435 - THE1B LTR MaLR -2 362 1 2086 177 61 34 chr9 3942192 3942998 -113919629 + L1MA4A LINE L1 2950 6121 -182 462 189 0 27 chr9 3943009 3943120 -113919507 + L1MA4A LINE L1 6195 6302 -1 5099 168 38 15 chr9 3943416 3944259 -113918368 + MER21B LTR ERV1 1 862 -1 1210 237 18 85 chr9 3945547 3946041 -113916586 + L1MC4 LINE L1 7431 7891 -151 410 176 12 0 chr9 3946079 3946164 -113916463 + GA-rich Low_complexity Low_complexity 2 87 0 187 146 49 0 chr9 3946279 3946320 -113916307 + GA-rich Low_complexity Low_complexity 2 44 0 280 205 27 98 chr9 3946321 3946433 -113916194 + L1MC4 LINE L1 7939 8042 0 260 267 11 33 chr9 3946464 3946554 -113916073 - MIR SINE MIR -136 126 39 252 321 83 90 chr9 3947042 3947619 -113915008 + L2 LINE L2 2271 2843 -471 356 399 70 38 chr9 3947675 3948016 -113914611 + L2 LINE L2 2916 3267 -5 246 308 66 0 chr9 3951676 3951767 -113910860 - L2 LINE L2 -3 3269 3173 229 239 0 0 chr9 3951872 3951918 -113910709 - LTR16C LTR ERVL -257 234 189 223 245 19 0 chr9 3954120 3954173 -113908454 - MER5A DNA MER1_type -127 62 9 326 300 0 58 chr9 3954294 3954414 -113908213 - MIR SINE MIR -116 146 34 424 220 165 55 chr9 3955454 3955672 -113906955 + MIR SINE MIR 21 262 0 652 234 18 80 chr9 3959266 3959492 -113903135 - MER58C DNA MER1_type 0 215 4 427 291 200 0 chr9 3960131 3960306 -113902321 - MIR SINE MIR -19 243 34 212 0 36 0 chr9 3960353 3960381 -113902246 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr9 3960701 3960728 -113901899 + (GGA)n Simple_repeat Simple_repeat 3 29 0 1641 170 28 28 chr9 3961036 3961324 -113901303 + AluJo SINE Alu 13 300 -12 1127 101 63 0 chr9 3962561 3962720 -113899907 - L1PA13 LINE L1 -10 6153 5985 815 131 12 101 chr9 3963312 3963480 -113899147 + MER5A DNA MER1_type 23 175 -14 2142 110 0 13 chr9 3965989 3966289 -113896338 + AluSx SINE Alu 3 298 -14 27 29 0 0 chr9 3967039 3967073 -113895554 + AT_rich Low_complexity Low_complexity 1 34 0 651 319 129 21 chr9 3969331 3969758 -113892869 - L2 LINE L2 -2 3311 2839 243 266 138 83 chr9 3969803 3970246 -113892381 + L1ME LINE L1 5352 5818 -303 703 217 32 28 chr9 3970681 3970898 -113891729 + LTR7 LTR ERV1 233 450 0 747 251 55 5 chr9 3970920 3971119 -113891508 - MER63A DNA MER1_type -1 209 1 466 161 301 0 chr9 3972191 3972334 -113890293 - MER5A DNA MER1_type -2 187 2 813 247 171 28 chr9 3973183 3973539 -113889088 - L2 LINE L2 0 3313 2907 1480 168 33 97 chr9 3973722 3974146 -113888481 + MLT2C1 LTR ERVL 1 397 0 270 333 207 0 chr9 3974338 3974488 -113888139 - MIR SINE MIR -80 182 2 2272 67 0 58 chr9 3974580 3974893 -113887734 - AluY SINE Alu -16 295 1 954 289 179 39 chr9 3975530 3976243 -113886384 - L2 LINE L2 -239 3074 2247 342 0 0 0 chr9 3977209 3977247 -113885380 + (CA)n Simple_repeat Simple_repeat 2 39 0 496 248 117 9 chr9 3977258 3977472 -113885155 + LTR16A1 LTR ERVL 217 453 -4 407 359 37 23 chr9 3977707 3977924 -113884703 - L3 LINE CR1 -19 1558 1339 219 36 0 0 chr9 3978296 3978324 -113884303 + (T)n Simple_repeat Simple_repeat 1 28 0 771 154 70 6 chr9 3979397 3979553 -113883074 + MER3 DNA MER1_type 1 166 -43 279 240 60 130 chr9 3979588 3979788 -113882839 - L3 LINE CR1 -99 1478 1293 1565 203 7 11 chr9 3979932 3980234 -113882393 - AluJo SINE Alu 0 312 13 402 297 61 12 chr9 3980292 3980457 -113882170 + MIR SINE MIR 76 248 -14 308 309 127 27 chr9 3980455 3980675 -113881952 - L3 LINE CR1 -369 1208 967 * 446 48 0 16 chr9 3980684 3980746 -113881881 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 346 320 0 10 chr9 3980750 3980850 -113881777 - L2 LINE L2 -18 3295 3197 549 316 47 19 chr9 3981209 3981421 -113881206 + MIR SINE MIR 36 253 -9 463 273 80 17 chr9 3981574 3981750 -113880877 + MIR SINE MIR 6 192 -70 1770 158 0 67 chr9 3983732 3984062 -113878565 - AluJo SINE Alu -4 308 1 1492 199 130 31 chr9 3987888 3988304 -113874323 + LTR40b LTR ERVL 3 459 -3 353 333 44 7 chr9 3988851 3988986 -113873641 + MIR3 SINE MIR 5 144 -64 374 0 0 0 chr9 3988987 3989030 -113873597 - L1PA13 LINE L1 -211 5952 5910 * 1538 99 37 4 chr9 3989005 3989292 -113873335 + L1PA13 LINE L1 5913 6207 0 2585 56 0 0 chr9 3989596 3989898 -113872729 - AluY SINE Alu -9 302 1 22 0 0 0 chr9 3990205 3990227 -113872400 + AT_rich Low_complexity Low_complexity 1 22 0 251 247 114 63 chr9 3990867 3991025 -113871602 - MIR SINE MIR -19 243 78 288 0 0 0 chr9 3991519 3991551 -113871076 + (CA)n Simple_repeat Simple_repeat 2 33 0 236 350 63 0 chr9 3991689 3991832 -113870795 + L1ME LINE L1 5669 5820 -301 645 327 156 21 chr9 3992280 3992754 -113869873 + L3 LINE CR1 47 584 -993 417 93 0 0 chr9 3993481 3993535 -113869092 + AluS SINE Alu 21 74 -238 2520 163 133 9 chr9 3995006 3995192 -113867435 + MER6A DNA MER2_type 1 163 -702 231 114 0 0 chr9 3995192 3995227 -113867400 + (TG)n Simple_repeat Simple_repeat 1 35 0 2520 163 133 9 chr9 3995227 3995573 -113867054 + MER6A DNA MER2_type 163 599 -6 2306 88 10 3 chr9 3995828 3996135 -113866492 - AluY SINE Alu -2 309 1 183 250 0 0 chr9 3996174 3996226 -113866401 + CT-rich Low_complexity Low_complexity 1 52 0 1934 118 33 26 chr9 3996226 3996530 -113866097 - AluSx SINE Alu -6 306 1 646 275 75 32 chr9 3996567 3996847 -113865780 + L2 LINE L2 3022 3313 0 266 267 33 22 chr9 3996979 3997069 -113865558 - MER103 DNA DNA -68 98 8 437 290 58 39 chr9 4001213 4001368 -113861259 + L3 LINE CR1 1417 1574 -3 1126 125 0 34 chr9 4002787 4002963 -113859664 - AluSq SINE Alu -19 294 125 207 0 0 0 chr9 4003300 4003323 -113859304 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 229 303 0 53 chr9 4003612 4003688 -113858939 - L2 LINE L2 -37 3276 3205 2335 110 3 0 chr9 4004004 4004314 -113858313 - AluSx SINE Alu -1 311 1 22 0 0 0 chr9 4005588 4005610 -113857017 + AT_rich Low_complexity Low_complexity 1 22 0 519 333 75 50 chr9 4009076 4009514 -113853113 + HAL1b LINE L1 236 684 -664 680 193 93 7 chr9 4010543 4010693 -113851934 + MER5A DNA MER1_type 2 164 -25 328 310 124 8 chr9 4010730 4010859 -113851768 + MER91B DNA MER1_type 46 189 -1 207 0 0 0 chr9 4010959 4010982 -113851645 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 739 70 18 26 chr9 4010984 4011098 -113851529 - L1HS LINE L1 -5 6150 6038 22 35 0 0 chr9 4011449 4011478 -113851149 + AT_rich Low_complexity Low_complexity 1 29 0 180 286 27 129 chr9 4012247 4012394 -113850233 + MER5A DNA MER1_type 48 179 -10 * 420 246 179 30 chr9 4012281 4012415 -113850212 - MER5A DNA MER1_type -32 157 4 1290 216 78 35 chr9 4014346 4014744 -113847883 - MSTB2 LTR MaLR 0 457 43 518 298 153 55 chr9 4015521 4015940 -113846687 + L2 LINE L2 2810 3269 -3 232 224 20 0 chr9 4018464 4018513 -113844114 + MIR SINE MIR 212 261 -1 532 219 16 24 chr9 4018546 4018669 -113843958 - MIR SINE MIR -105 157 36 198 294 15 44 chr9 4019276 4019344 -113843283 + L2 LINE L2 3246 3311 -2 1250 307 115 7 chr9 4019523 4020259 -113842368 + L2 LINE L2 2251 3061 -211 35 24 0 0 chr9 4021182 4021224 -113841403 + AT_rich Low_complexity Low_complexity 1 42 0 465 50 0 0 chr9 4021447 4021507 -113841120 + (CA)n Simple_repeat Simple_repeat 2 61 0 265 250 62 0 chr9 4022133 4022197 -113840430 + L2 LINE L2 3179 3246 -26 412 240 10 21 chr9 4022402 4022498 -113840129 - MER5A DNA MER1_type -84 105 11 324 0 0 0 chr9 4023366 4023402 -113839225 + (TC)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr9 4023401 4023428 -113839199 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 219 152 0 0 chr9 4023439 4023485 -113839142 + (CA)n Simple_repeat Simple_repeat 1 46 0 183 290 120 50 chr9 4023802 4023902 -113838725 - MIR SINE MIR -60 148 42 276 100 0 0 chr9 4025636 4025676 -113836951 + (A)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr9 4026235 4026263 -113836364 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 216 306 88 64 chr9 4027894 4028135 -113834492 - MIR3 SINE MIR -14 248 1 327 355 57 21 chr9 4028179 4028320 -113834307 - L2 LINE L2 -5 3267 3122 1905 168 0 42 chr9 4028658 4029039 -113833588 + MLT1A1 LTR MaLR 1 365 0 459 301 106 17 chr9 4029041 4029277 -113833350 + L2 LINE L2 2699 2955 -359 1506 138 6 114 chr9 4029366 4029477 -113833150 + MLT1B LTR MaLR 69 190 -200 1985 116 53 0 chr9 4029477 4029762 -113832865 + AluSx SINE Alu 1 300 -12 1506 138 6 114 chr9 4029762 4030011 -113832616 + MLT1B LTR MaLR 190 390 0 494 286 79 26 chr9 4030029 4030218 -113832409 + L2 LINE L2 3115 3313 0 1780 173 0 46 chr9 4031530 4031854 -113830773 + AluJo SINE Alu 1 309 -3 181 352 0 70 chr9 4034547 4034618 -113828009 + MIR SINE MIR 32 97 -165 2432 82 3 0 chr9 4034791 4035097 -113827530 - AluSx SINE Alu -1 311 5 258 291 12 47 chr9 4035539 4035625 -113827002 + MER5A DNA MER1_type 6 88 -101 433 262 21 48 chr9 4035686 4035831 -113826796 + L2 LINE L2 3171 3311 -2 2009 78 81 3 chr9 4036121 4036405 -113826222 + AluSx SINE Alu 1 306 -6 620 235 31 15 chr9 4036412 4036608 -113826019 - L1MB7 LINE L1 -10 6174 5976 237 33 0 0 chr9 4036619 4036649 -113825978 + (A)n Simple_repeat Simple_repeat 1 30 0 2282 117 3 0 chr9 4036830 4037138 -113825489 + AluSx SINE Alu 2 310 -2 253 321 6 13 chr9 4037234 4037393 -113825234 + L1MC4a LINE L1 5775 5932 -1876 261 259 74 30 chr9 4038263 4038398 -113824229 - L1ME3A LINE L1 -5 6165 6025 450 165 132 0 chr9 4040167 4040258 -113822369 + MER20 DNA MER1_type 116 218 -1 656 161 0 32 chr9 4040559 4040745 -113821882 + GA-rich Low_complexity Low_complexity 1 180 0 1228 243 118 17 chr9 4042606 4043014 -113819613 - MER77 LTR ERV1 -3 602 154 239 210 170 30 chr9 4043056 4043156 -113819471 - MER77 LTR ERV1 -438 167 54 432 0 0 0 chr9 4046403 4046451 -113816176 + (A)n Simple_repeat Simple_repeat 1 48 0 258 286 97 45 chr9 4047946 4048215 -113814412 - L1ME3A LINE L1 -117 6004 5722 245 260 10 30 chr9 4048220 4048320 -113814307 + (TA)n Simple_repeat Simple_repeat 1 98 0 1010 152 73 0 chr9 4048515 4048706 -113813921 - MER2 DNA MER2_type -134 211 7 288 219 0 14 chr9 4049093 4049166 -113813461 + MIR SINE MIR 61 132 -130 217 231 29 77 chr9 4049135 4049239 -113813388 + L2 LINE L2 2993 3091 -181 * 442 272 76 86 chr9 4049369 4049659 -113812968 - L2 LINE L2 -3 3310 3024 314 239 97 18 chr9 4049920 4050033 -113812594 - MIR3 SINE MIR -76 132 11 186 43 0 0 chr9 4050421 4050444 -113812183 + (TTC)n Simple_repeat Simple_repeat 2 24 0 287 229 324 17 chr9 4051063 4051242 -113811385 + L2 LINE L2 3008 3241 -31 2313 113 25 19 chr9 4052638 4053000 -113809627 + THE1B LTR MaLR 1 364 0 4878 99 4 3 chr9 4053000 4053708 -113808919 + THE1B-int LTR MaLR 1 709 -871 4350 102 16 0 chr9 4053706 4054324 -113808303 + THE1B-int LTR MaLR 953 1580 0 * 1348 141 16 25 chr9 4054324 4054566 -113808061 + THE1B LTR MaLR 1 240 -124 1331 133 14 9 chr9 4054559 4054777 -113807850 + THE1B LTR MaLR 146 364 0 * 26 0 0 0 chr9 4054828 4054854 -113807773 + AT_rich Low_complexity Low_complexity 1 26 0 1732 164 7 18 chr9 4054855 4055141 -113807486 - AluJb SINE Alu -29 283 1 3230 195 52 46 chr9 4056321 4057113 -113805514 + L1MD2 LINE L1 653 1439 -4967 2302 107 16 0 chr9 4057113 4057421 -113805206 + AluSq SINE Alu 1 313 0 3230 195 52 46 chr9 4057421 4057663 -113804964 + L1MD2 LINE L1 1439 1678 -4728 580 144 18 0 chr9 4057663 4057774 -113804853 - L1MA9 LINE L1 -4 6308 6196 3230 195 52 46 chr9 4057774 4058056 -113804571 + L1MD2 LINE L1 1678 1949 -4457 4378 202 50 13 chr9 4058213 4059753 -113802874 + L1MD2 LINE L1 5009 6595 -24 2562 59 0 0 chr9 4061377 4061683 -113800944 - AluY SINE Alu -5 306 1 216 91 23 45 chr9 4063163 4063207 -113799420 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 333 268 89 8 chr9 4063360 4063483 -113799144 - L1ME4a LINE L1 -241 5880 5748 760 212 118 6 chr9 4063654 4063824 -113798803 - MER5A DNA MER1_type 0 189 1 269 106 64 0 chr9 4063845 4063892 -113798735 + U5 snRNA snRNA 1 50 -66 812 308 68 51 chr9 4064442 4065670 -113796957 + L1MDa LINE L1 4 1252 -4867 380 338 125 10 chr9 4065707 4066043 -113796584 + L1MDa LINE L1 1407 1691 -863 652 307 92 10 chr9 4066219 4066730 -113795897 + L1ME3A LINE L1 2958 3510 -2636 2218 71 7 24 chr9 4066759 4067054 -113795573 + AluSp SINE Alu 1 290 -23 266 0 0 29 chr9 4067059 4067094 -113795533 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 317 258 207 35 chr9 4067194 4067652 -113794975 + L1ME3A LINE L1 3712 4248 -1898 1212 290 67 41 chr9 4067696 4069125 -113793502 - L1MC4 LINE L1 -864 6944 5479 742 286 52 44 chr9 4069132 4069650 -113792977 + L1ME3A LINE L1 4325 4846 -1300 547 289 35 39 chr9 4069674 4069986 -113792641 + L1ME3A LINE L1 5647 5957 -213 22 70 0 0 chr9 4070167 4070210 -113792417 + AT_rich Low_complexity Low_complexity 1 43 0 354 348 166 7 chr9 4070300 4070711 -113791916 + L2 LINE L2 2722 3186 -86 241 370 65 0 chr9 4070720 4070828 -113791799 - L2 LINE L2 -9 3263 3149 2339 166 67 34 chr9 4071652 4072129 -113790498 + MLT1D LTR MaLR 13 505 0 332 274 68 75 chr9 4072374 4072604 -113790023 + MLT1L LTR MaLR 107 391 -193 899 137 0 0 chr9 4072791 4072908 -113789719 + FLAM_C SINE Alu 1 117 -16 233 378 96 22 chr9 4073702 4073837 -113788790 - L2 LINE L2 -12 3260 3116 227 238 188 20 chr9 4074422 4074523 -113788104 - MIR SINE MIR -7 255 138 347 232 49 0 chr9 4074907 4074989 -113787638 + L1MC/D LINE L1 5567 5652 -469 294 273 10 20 chr9 4075017 4075116 -113787511 + (CATA)n Simple_repeat Simple_repeat 1 98 0 840 255 48 0 chr9 4075132 4075340 -113787287 + MIR SINE MIR 2 219 -43 303 217 83 24 chr9 4075390 4075492 -113787135 + L1MC/D LINE L1 5712 5820 -301 225 0 0 0 chr9 4075998 4076023 -113786604 + (A)n Simple_repeat Simple_repeat 1 25 0 364 332 93 21 chr9 4076260 4076453 -113786174 - MIR SINE MIR -36 226 20 523 303 40 34 chr9 4078476 4078651 -113783976 - MIR3 SINE MIR -21 187 12 585 188 255 0 chr9 4079674 4079823 -113782804 - MER20 DNA MER1_type -2 217 31 727 301 35 13 chr9 4079880 4080109 -113782518 + MIR SINE MIR 9 242 -20 285 310 41 47 chr9 4080134 4080305 -113782322 + MLT2E LTR ERVL 41 210 -418 228 304 29 29 chr9 4080428 4080530 -113782097 + MLT2E LTR ERVL 520 621 -7 193 269 39 39 chr9 4080977 4081055 -113781572 - L2 LINE L2 -52 3220 3143 211 364 50 8 chr9 4081865 4081986 -113780641 + L2 LINE L2 3146 3271 -1 2158 122 0 0 chr9 4082453 4082748 -113779879 - AluSq SINE Alu 0 313 19 187 265 0 20 chr9 4083236 4083285 -113779342 + L2 LINE L2 3213 3260 -12 206 264 0 83 chr9 4083589 4083661 -113778966 + MER91A DNA MER1_type 2 67 -129 1935 184 38 63 chr9 4083991 4084448 -113778179 + MLT1C LTR MaLR 6 467 0 352 284 9 18 chr9 4084448 4084557 -113778070 - MIR3 SINE MIR -42 166 59 313 271 148 63 chr9 4084583 4084867 -113777760 - L2 LINE L2 -1 3312 3005 2353 101 0 3 chr9 4085299 4085606 -113777021 + AluSx SINE Alu 1 306 -6 212 147 0 0 chr9 4087836 4087870 -113774757 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 203 263 11 63 chr9 4088976 4089071 -113773556 - MIR SINE MIR -133 129 40 796 239 73 121 chr9 4089153 4089414 -113773213 - L2 LINE L2 -6 3307 3078 1509 164 21 76 chr9 4089414 4089744 -113772883 - AluJo SINE Alu 0 312 1 796 239 73 121 chr9 4089744 4089963 -113772664 - L2 LINE L2 -235 3078 2850 293 0 27 0 chr9 4089982 4090019 -113772608 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 294 73 0 0 chr9 4090843 4090884 -113771743 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 448 290 27 39 chr9 4091783 4091974 -113770653 - MIR SINE MIR -25 237 46 2020 224 50 32 chr9 4092212 4092778 -113769849 + L1ME1 LINE L1 5584 6159 -7 25 31 0 0 chr9 4092840 4092872 -113769755 + AT_rich Low_complexity Low_complexity 1 32 0 339 222 81 40 chr9 4093481 4093580 -113769047 + MER5C DNA MER1_type 21 123 -201 240 192 0 0 chr9 4093724 4093776 -113768851 + MER5C DNA MER1_type 270 321 -3 387 316 121 16 chr9 4094448 4094638 -113767989 + L2 LINE L2 3016 3225 -47 2161 108 7 10 chr9 4094660 4094966 -113767661 + AluSx SINE Alu 1 305 -7 2099 121 0 0 chr9 4095074 4095379 -113767248 - AluSc SINE Alu -4 305 1 189 0 0 0 chr9 4096221 4096242 -113766385 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 321 292 186 6 chr9 4096510 4096671 -113765956 - MIR SINE MIR -48 214 25 204 40 0 0 chr9 4096697 4096722 -113765905 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 494 273 74 51 chr9 4097828 4098044 -113764583 + MIR SINE MIR 28 248 -14 652 232 82 1 chr9 4098190 4098405 -113764222 - L1ME3A LINE L1 -7 6155 5929 7132 109 34 9 chr9 4099014 4100407 -113762220 - L1MA1 LINE L1 -4 6298 4863 4186 168 42 9 chr9 4100592 4101355 -113761272 + L1MB5 LINE L1 5386 6173 -1 40 37 0 0 chr9 4102131 4102185 -113760442 + AT_rich Low_complexity Low_complexity 1 54 0 2408 70 3 3 chr9 4102546 4102846 -113759781 - AluY SINE Alu -11 300 1 324 366 41 0 chr9 4102847 4102970 -113759657 - MER115 DNA AcHobo -175 518 391 740 345 9 4 chr9 4103019 4103248 -113759379 - MER115 DNA AcHobo -413 280 51 425 264 28 9 chr9 4103253 4103359 -113759268 + MER5A DNA MER1_type 7 114 -75 234 0 0 0 chr9 4103558 4103584 -113759043 + (A)n Simple_repeat Simple_repeat 1 26 0 1347 201 30 30 chr9 4103655 4103923 -113758704 + AluJb SINE Alu 23 290 -22 451 311 122 31 chr9 4104821 4105043 -113757584 - MIR SINE MIR -20 242 1 313 307 62 22 chr9 4106678 4106857 -113755770 + MIR SINE MIR 21 206 -56 710 285 60 4 chr9 4106929 4107161 -113755466 + MIR SINE MIR 2 252 -10 347 0 23 0 chr9 4107235 4107278 -113755349 + (CA)n Simple_repeat Simple_repeat 1 44 0 475 328 39 6 chr9 4109199 4109379 -113753248 - MIR3 SINE MIR -3 205 20 598 209 99 41 chr9 4110551 4110723 -113751904 + MER5A DNA MER1_type 1 182 -7 249 151 19 38 chr9 4110833 4110886 -113751741 - MER5B DNA MER1_type 0 178 127 630 233 5 87 chr9 4110887 4111093 -113751534 + MER20 DNA MER1_type 31 219 0 2808 139 90 25 chr9 4111321 4111845 -113750782 + LTR64 LTR ERVK 1 558 0 2084 103 3 14 chr9 4115039 4115330 -113747297 - AluSg SINE Alu -22 288 1 1284 335 159 23 chr9 4115505 4116623 -113746004 + L3 LINE CR1 105 1374 -203 2151 148 56 8 chr9 4116714 4117072 -113745555 + THE1C LTR MaLR 1 375 0 234 349 70 0 chr9 4117281 4117367 -113745260 - L2 LINE L2 -48 3224 3133 7177 52 1 1 chr9 4119303 4120303 -113742324 + L1PA6 LINE L1 5161 6154 0 2972 177 34 16 chr9 4122017 4122627 -113740000 - L1MB5 LINE L1 -9 6165 5545 1884 163 7 3 chr9 4122648 4122942 -113739685 - AluSx SINE Alu -17 295 1 455 232 20 0 chr9 4123189 4123288 -113739339 + L2 LINE L2 3141 3241 -31 22 0 0 0 chr9 4123397 4123419 -113739208 + AT_rich Low_complexity Low_complexity 1 22 0 286 321 47 0 chr9 4123904 4124010 -113738617 + L2 LINE L2 3188 3298 -15 210 262 24 24 chr9 4126275 4126359 -113736268 + GA-rich Low_complexity Low_complexity 1 84 0 576 221 15 113 chr9 4126538 4126733 -113735894 - MER91B DNA MER1_type -14 176 1 834 230 6 11 chr9 4126863 4127041 -113735586 + MER45A DNA AcHobo 1 177 -1 732 268 114 21 chr9 4128155 4128396 -113734231 - L1MCc LINE L1 -4889 1534 1242 2343 87 0 7 chr9 4128396 4128705 -113733922 + AluY SINE Alu 5 311 0 732 268 114 21 chr9 4128705 4128848 -113733779 - L1MCc LINE L1 -5181 1242 1114 234 0 0 0 chr9 4129498 4129524 -113733103 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 411 21 0 0 chr9 4129523 4129571 -113733056 + (GA)n Simple_repeat Simple_repeat 1 48 0 231 103 73 0 chr9 4130085 4130153 -113732474 + T-rich Low_complexity Low_complexity 3 75 0 210 37 0 0 chr9 4130153 4130180 -113732447 + (G)n Simple_repeat Simple_repeat 1 27 0 205 286 0 0 chr9 4130209 4130279 -113732348 + G-rich Low_complexity Low_complexity 1 70 0 358 249 83 5 chr9 4130372 4130531 -113732096 - L1 LINE L1 -2945 3201 3027 192 47 47 23 chr9 4130531 4130574 -113732053 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 1948 58 8 0 chr9 4130574 4130835 -113731792 - L1PA5 LINE L1 -153 6001 5739 418 252 49 34 chr9 4131800 4131992 -113730635 + MIR SINE MIR 17 205 -57 2370 89 0 7 chr9 4132003 4132306 -113730321 + AluY SINE Alu 1 301 -10 268 277 18 9 chr9 4132763 4132875 -113729752 + L1 LINE L1 3796 3908 -2238 442 325 101 38 chr9 4133403 4133769 -113728858 + L1 LINE L1 4790 5178 -968 1300 132 10 29 chr9 4133908 4134112 -113728515 + AluSx SINE Alu 44 243 -69 309 345 81 43 chr9 4134248 4134457 -113728170 + L3 LINE CR1 48 264 -1313 596 252 5 48 chr9 4135960 4136166 -113726461 + LTR41 LTR ERVL 1 197 -576 21 95 0 0 chr9 4136557 4136620 -113726007 + AT_rich Low_complexity Low_complexity 1 63 0 25 65 0 0 chr9 4136627 4136673 -113725954 + AT_rich Low_complexity Low_complexity 1 46 0 304 203 63 0 chr9 4136674 4136753 -113725874 + LTR50 LTR ERVL 712 795 0 324 286 71 42 chr9 4137186 4137497 -113725130 + HAL1b LINE L1 399 718 -630 216 97 0 0 chr9 4138184 4138215 -113724412 + (TG)n Simple_repeat Simple_repeat 2 32 0 298 281 39 55 chr9 4138278 4138406 -113724221 - MIR3 SINE MIR -10 198 73 273 197 0 0 chr9 4139838 4139904 -113722723 + (TG)n Simple_repeat Simple_repeat 1 66 0 205 171 0 24 chr9 4139942 4139983 -113722644 + (TG)n Simple_repeat Simple_repeat 2 41 0 190 222 111 16 chr9 4142002 4142065 -113720562 - L3 LINE CR1 -1204 373 305 334 320 79 28 chr9 4142642 4142820 -113719807 - MER5A DNA MER1_type -1 188 2 384 204 82 61 chr9 4143092 4143239 -113719388 + MIR SINE MIR 103 252 -10 281 313 37 37 chr9 4144205 4144339 -113718288 - MIR3 SINE MIR -9 199 66 185 0 40 0 chr9 4144448 4144473 -113718154 + (CAA)n Simple_repeat Simple_repeat 2 27 0 666 185 37 0 chr9 4144473 4144608 -113718019 + L1MA10 LINE L1 6180 6319 -15 2060 83 3 31 chr9 4144644 4144957 -113717670 + AluY SINE Alu 1 305 0 1476 228 19 60 chr9 4144990 4145517 -113717110 + L1ME2 LINE L1 5665 6333 -1 360 379 52 6 chr9 4145591 4145765 -113716862 + L3 LINE CR1 893 1074 -503 1669 183 0 7 chr9 4146132 4146422 -113716205 + AluJb SINE Alu 1 288 -24 333 320 26 16 chr9 4146491 4146685 -113715942 - L1ME LINE L1 -353 5768 5573 369 291 99 7 chr9 4146689 4146840 -113715787 + L3 LINE CR1 1092 1256 -321 370 240 132 8 chr9 4146930 4147059 -113715568 + LTR50 LTR ERVL 12 156 -639 563 171 257 22 chr9 4147089 4147320 -113715307 + LTR50 LTR ERVL 228 634 -161 394 145 72 0 chr9 4147353 4147436 -113715191 + LTR50 LTR ERVL 705 793 -2 201 392 21 10 chr9 4147438 4147535 -113715092 + L3 LINE CR1 1435 1532 -45 205 330 121 0 chr9 4148617 4148708 -113713919 - MIR SINE MIR -102 160 59 201 74 0 0 chr9 4149102 4149129 -113713498 + (A)n Simple_repeat Simple_repeat 1 27 0 368 256 13 0 chr9 4149580 4149658 -113712969 - L2 LINE L2 0 3272 3194 1407 187 33 19 chr9 4149662 4150026 -113712601 - MER96B DNA MER1_type? 0 417 49 504 227 143 14 chr9 4150700 4151016 -113711611 + MLT1J2 LTR MaLR 63 450 0 343 195 93 8 chr9 4152610 4152728 -113709899 - MER117 DNA MER1_type -23 174 47 237 402 0 8 chr9 4152793 4152910 -113709717 - MIR3 SINE MIR -16 192 77 351 0 0 0 chr9 4153590 4153629 -113708998 + (CA)n Simple_repeat Simple_repeat 2 40 0 2258 139 38 12 chr9 4155039 4155456 -113707171 + MSTA LTR MaLR 1 428 0 373 327 108 75 chr9 4155623 4155984 -113706643 + L2 LINE L2 2900 3272 0 201 222 19 19 chr9 4157600 4157654 -113704973 + GA-rich Low_complexity Low_complexity 1 54 0 204 303 40 61 chr9 4157729 4157828 -113704799 + L2 LINE L2 3168 3264 -8 303 319 42 25 chr9 4158076 4158195 -113704432 - L2 LINE L2 -4 3309 3189 24 0 0 0 chr9 4158934 4158958 -113703669 + AT_rich Low_complexity Low_complexity 1 24 0 1516 166 69 42 chr9 4159012 4159301 -113703326 + AluJo SINE Alu 1 297 -15 23 0 0 0 chr9 4159920 4159943 -113702684 + AT_rich Low_complexity Low_complexity 1 23 0 204 296 0 42 chr9 4160076 4160147 -113702480 + MIR SINE MIR 14 81 -181 566 274 121 21 chr9 4160349 4160539 -113702088 + MIR SINE MIR 4 212 -50 1717 172 0 40 chr9 4160541 4160843 -113701784 + AluJo SINE Alu 1 290 -22 21 36 0 0 chr9 4160914 4160942 -113701685 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr9 4160981 4161016 -113701611 + (CA)n Simple_repeat Simple_repeat 2 36 0 395 169 96 0 chr9 4161036 4161119 -113701508 - Tigger3b DNA MER2_type 0 1232 1142 973 98 93 27 chr9 4161128 4161311 -113701316 + THE1C LTR MaLR 181 375 0 * 5083 132 56 33 chr9 4161311 4161621 -113701006 - Tigger3b DNA MER2_type -2008 1020 719 2062 84 0 4 chr9 4161621 4161882 -113700745 - AluY SINE Alu -13 298 39 5083 132 56 33 chr9 4161882 4162568 -113700059 - Tigger3b DNA MER2_type -2309 719 1 831 172 28 0 chr9 4162580 4162725 -113699902 - MIR SINE MIR -112 150 2 24 32 0 0 chr9 4163242 4163273 -113699354 + AT_rich Low_complexity Low_complexity 1 31 0 311 282 26 43 chr9 4163704 4163821 -113698806 + L1ME LINE L1 5448 5562 -559 2281 79 9 3 chr9 4164361 4164691 -113697936 - L1MA5A LINE L1 0 6297 5966 485 284 102 49 chr9 4165220 4165445 -113697182 - MIR SINE MIR -6 256 20 1938 142 0 0 chr9 4166198 4166507 -113696120 + AluSx SINE Alu 1 309 0 1675 153 63 137 chr9 4168619 4169123 -113693504 - MLT1C LTR MaLR 0 467 1 293 211 9 114 chr9 4169407 4169521 -113693106 + MIR SINE MIR 90 191 -71 294 294 104 51 chr9 4170531 4170736 -113691891 + MIR SINE MIR 9 212 -50 871 225 18 31 chr9 4171912 4172134 -113690493 + MER20 DNA MER1_type 1 219 0 25 0 0 0 chr9 4172167 4172192 -113690435 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 4172696 4172717 -113689910 + AT_rich Low_complexity Low_complexity 1 21 0 1737 244 175 38 chr9 4173448 4174293 -113688334 + L2 LINE L2 2064 3022 -291 632 222 26 31 chr9 4176708 4176902 -113685725 + MLT1J2 LTR MaLR 1 193 -257 230 239 256 26 chr9 4176929 4177046 -113685581 + MLT1J2 LTR MaLR 266 409 -41 287 196 0 72 chr9 4177317 4177414 -113685213 - L1MC5 LINE L1 -30 7931 7842 390 325 149 48 chr9 4179193 4179608 -113683019 + L2 LINE L2 2816 3272 0 330 294 71 8 chr9 4179651 4179777 -113682850 - MER94 DNA DNA 0 134 1 21 36 0 0 chr9 4181351 4181379 -113681248 + AT_rich Low_complexity Low_complexity 1 28 0 556 194 276 0 chr9 4181947 4182081 -113680546 + MER5B DNA MER1_type 6 176 -2 402 328 67 36 chr9 4182545 4183011 -113679616 - L1ME3 LINE L1 -238 5924 5445 358 308 122 65 chr9 4187434 4187957 -113674670 - L1M2 LINE L1 -5481 1368 816 198 286 36 36 chr9 4188722 4188778 -113673849 - L2 LINE L2 -12 3260 3205 193 349 45 0 chr9 4190844 4190910 -113671717 + L2 LINE L2 3235 3303 -10 378 0 0 0 chr9 4191089 4191131 -113671496 + (CA)n Simple_repeat Simple_repeat 2 43 0 648 266 87 57 chr9 4192656 4193347 -113669280 + L1ME4a LINE L1 5415 6119 -2 223 260 117 0 chr9 4194261 4194338 -113668289 - MIR SINE MIR -66 142 57 234 105 0 0 chr9 4195086 4195124 -113667503 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 4195665 4195693 -113666934 + AT_rich Low_complexity Low_complexity 1 28 0 206 300 29 0 chr9 4196661 4196731 -113665896 - MIR SINE MIR -79 129 58 459 218 143 0 chr9 4197408 4197555 -113665072 - MER104 DNA Tc2 -3 177 10 344 311 0 30 chr9 4197598 4197733 -113664894 + L2 LINE L2 2936 3066 -206 263 261 148 106 chr9 4198659 4198801 -113663826 + MIR SINE MIR 2 149 -113 2562 116 57 7 chr9 4198816 4199223 -113663404 + MSTA LTR MaLR 1 427 -1 8671 166 23 4 chr9 4199225 4200826 -113661801 + MSTA-int LTR MaLR 15 1645 -6 2432 142 54 5 chr9 4200831 4201239 -113661388 + MSTA LTR MaLR 1 428 0 285 307 59 50 chr9 4201239 4201340 -113661287 + MIR SINE MIR 161 262 0 23 0 0 0 chr9 4201511 4201534 -113661093 + AT_rich Low_complexity Low_complexity 1 23 0 240 320 68 19 chr9 4202039 4202142 -113660485 - L2 LINE L2 -24 3248 3141 279 213 12 25 chr9 4202189 4202269 -113660358 - MER116 DNA Mariner -1 79 1 654 214 26 7 chr9 4202310 4202464 -113660163 + MIR SINE MIR 50 206 -56 362 214 401 6 chr9 4202640 4202822 -113659805 - L1MC4 LINE L1 -146 7896 7643 777 190 107 19 chr9 4202957 4203162 -113659465 + MIR SINE MIR 13 235 -27 450 0 0 0 chr9 4203294 4203344 -113659283 + (CA)n Simple_repeat Simple_repeat 2 51 0 278 250 48 73 chr9 4203900 4204059 -113658568 + MIR SINE MIR 49 212 -50 23 0 0 0 chr9 4204688 4204711 -113657916 + AT_rich Low_complexity Low_complexity 1 23 0 324 261 26 17 chr9 4205885 4206000 -113656627 + MER103 DNA DNA 4 119 -47 262 225 31 132 chr9 4206308 4206437 -113656190 - MER5B DNA MER1_type 0 178 63 846 238 8 10 chr9 4208065 4208295 -113654332 + MIR SINE MIR 20 247 -15 195 237 0 0 chr9 4208766 4208804 -113653823 + L2 LINE L2 3231 3268 -4 1678 138 43 72 chr9 4209066 4209413 -113653214 - MER1B DNA MER1_type 0 337 1 1593 165 0 0 chr9 4209568 4209822 -113652805 + AluJb SINE Alu 59 312 0 2300 99 0 3 chr9 4210265 4210568 -113652059 - AluSq SINE Alu -11 302 1 21 0 0 0 chr9 4212111 4212132 -113650495 + AT_rich Low_complexity Low_complexity 1 21 0 2068 150 23 51 chr9 4212541 4212701 -113649926 - L1MA9 LINE L1 0 6312 6149 180 77 0 0 chr9 4212701 4212727 -113649900 + (TG)n Simple_repeat Simple_repeat 2 27 0 2068 150 23 51 chr9 4212727 4212753 -113649874 - L1MA9 LINE L1 -163 6149 6124 2489 75 7 0 chr9 4212753 4213060 -113649567 + AluSx SINE Alu 1 309 -3 2068 150 23 51 chr9 4213060 4213305 -113649322 - L1MA9 LINE L1 -188 6124 5892 197 226 28 19 chr9 4215152 4215258 -113647369 + CT-rich Low_complexity Low_complexity 2 108 0 22 0 0 0 chr9 4217284 4217306 -113645321 + AT_rich Low_complexity Low_complexity 1 22 0 215 275 52 136 chr9 4217690 4218116 -113644511 + L2 LINE L2 2859 3248 -24 201 156 0 0 chr9 4218570 4218602 -113644025 + (CTA)n Simple_repeat Simple_repeat 1 32 0 327 285 85 15 chr9 4218662 4218792 -113643835 - MIR SINE MIR -14 248 110 180 111 0 0 chr9 4219319 4219346 -113643281 + (ATG)n Simple_repeat Simple_repeat 2 28 0 185 250 0 0 chr9 4219972 4220016 -113642611 + L2 LINE L2 3212 3255 -17 620 270 55 0 chr9 4220168 4220331 -113642296 - MIR3 SINE MIR -3 205 34 226 269 224 13 chr9 4221675 4221831 -113640796 + L3 LINE CR1 1370 1558 -19 345 288 54 18 chr9 4221958 4222069 -113640558 + MIR3 SINE MIR 83 197 -11 371 269 234 19 chr9 4222121 4222418 -113640209 + L1ME4a LINE L1 4224 4596 -1550 960 200 41 45 chr9 4222418 4222638 -113639989 - MER20 DNA MER1_type 0 219 1 371 269 234 19 chr9 4222638 4222660 -113639967 + L1ME4a LINE L1 4596 4612 -1534 2085 133 0 0 chr9 4222750 4223036 -113639591 + AluSx SINE Alu 1 286 -26 1143 276 100 39 chr9 4223258 4223819 -113638808 - MLT1G1 LTR MaLR 0 595 1 301 292 118 6 chr9 4223923 4224084 -113638543 + L1ME4a LINE L1 5120 5298 -848 335 254 62 68 chr9 4224325 4224502 -113638125 + L1ME4a LINE L1 5736 5911 -210 824 185 21 48 chr9 4225176 4225365 -113637262 - MER5A DNA MER1_type -5 184 1 788 189 7 7 chr9 4226324 4226467 -113636160 + MER5A DNA MER1_type 1 143 -46 519 337 71 68 chr9 4228158 4228568 -113634059 - L2 LINE L2 -65 3248 2838 218 287 130 37 chr9 4228597 4228705 -113633922 + L2 LINE L2 3151 3268 -4 2299 122 0 0 chr9 4228905 4229216 -113633411 + AluSx SINE Alu 1 311 -1 1407 156 30 117 chr9 4230430 4230763 -113631864 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 4230765 4230793 -113631834 + AT_rich Low_complexity Low_complexity 1 28 0 1494 192 39 111 chr9 4231045 4231144 -113631483 - MLT1C LTR MaLR 0 467 362 2050 110 10 36 chr9 4231144 4231452 -113631175 - AluSx SINE Alu -10 302 3 1494 192 39 111 chr9 4231452 4231846 -113630781 - MLT1C LTR MaLR -105 362 10 2168 89 26 13 chr9 4232046 4232350 -113630277 + AluY SINE Alu 1 308 -3 254 320 117 16 chr9 4232533 4232661 -113629966 - MIR3 SINE MIR -32 176 36 279 133 0 0 chr9 4232713 4232758 -113629869 + (CA)n Simple_repeat Simple_repeat 1 45 0 388 335 90 13 chr9 4232817 4232972 -113629655 - MIR3 SINE MIR -12 196 30 425 347 78 25 chr9 4233037 4233279 -113629348 + MIR SINE MIR 2 256 -6 2377 95 0 0 chr9 4234627 4234932 -113627695 + AluSq SINE Alu 1 305 -8 316 297 124 59 chr9 4235146 4235436 -113627191 - L2 LINE L2 -961 2353 2045 515 320 117 17 chr9 4235456 4235687 -113626940 + MIR SINE MIR 8 261 -1 250 316 175 18 chr9 4235972 4236143 -113626484 + MIR3 SINE MIR 4 201 -7 285 250 174 45 chr9 4236555 4236687 -113625940 - MIR3 SINE MIR -30 178 30 225 268 73 12 chr9 4236861 4236943 -113625684 - MIR SINE MIR -13 249 163 376 306 54 0 chr9 4236950 4237061 -113625566 + L2 LINE L2 3153 3269 -3 249 333 8 58 chr9 4237065 4237185 -113625442 - MIR SINE MIR -121 141 28 282 95 0 0 chr9 4237647 4237689 -113624938 + (CA)n Simple_repeat Simple_repeat 2 43 0 273 309 0 24 chr9 4238879 4238963 -113623664 + MIR SINE MIR 17 98 -110 1527 187 50 39 chr9 4238982 4239341 -113623286 + L1MC4 LINE L1 7680 8042 0 218 136 45 0 chr9 4242065 4242109 -113620518 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 515 300 17 11 chr9 4242365 4242545 -113620082 - Charlie8 DNA MER1_type -2215 202 22 369 0 0 0 chr9 4243030 4243071 -113619556 + (CA)n Simple_repeat Simple_repeat 2 42 0 891 174 34 0 chr9 4243079 4243228 -113619399 - AluJb SINE Alu -21 291 138 267 103 0 0 chr9 4243382 4243421 -113619206 + (CA)n Simple_repeat Simple_repeat 2 40 0 497 303 85 0 chr9 4245260 4245425 -113617202 - MIR SINE MIR -37 225 47 378 268 72 14 chr9 4245687 4245825 -113616802 - L1ME4a LINE L1 -12 6109 5964 269 303 0 91 chr9 4245974 4246085 -113616542 - L1ME4a LINE L1 -344 5777 5686 2147 137 0 0 chr9 4246085 4246392 -113616235 - AluSq SINE Alu -6 307 1 269 303 0 91 chr9 4246392 4246455 -113616172 - L1ME4a LINE L1 -435 5686 5619 396 0 0 0 chr9 4246599 4246643 -113615984 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 190 293 207 0 chr9 4246812 4246870 -113615757 + MIR SINE MIR 37 106 -102 30 0 0 0 chr9 4248338 4248368 -113614259 + AT_rich Low_complexity Low_complexity 1 30 0 326 220 230 0 chr9 4248891 4248991 -113613636 - MER94 DNA DNA -3 131 9 2318 95 0 0 chr9 4249096 4249391 -113613236 + AluSx SINE Alu 1 295 -17 268 251 137 69 chr9 4249842 4250017 -113612610 + MIR SINE MIR 65 251 -11 245 219 114 49 chr9 4250960 4251083 -113611544 + LTR67 LTR ERVL 2 132 -425 * 404 259 126 74 chr9 4251076 4251489 -113611138 + MLT1H LTR MaLR 52 547 -2 274 170 0 21 chr9 4251741 4251788 -113610839 + Charlie8 DNA MER1_type 231 276 -2141 229 158 0 26 chr9 4252179 4252217 -113610410 - MLT1F LTR MaLR -504 38 2 228 279 14 40 chr9 4252350 4252438 -113610189 - MIR SINE MIR -55 153 68 245 333 130 25 chr9 4252553 4252715 -113609912 + L3 LINE CR1 1204 1382 -195 389 288 68 8 chr9 4253003 4253135 -113609492 + MIR3 SINE MIR 49 188 -20 1886 226 51 31 chr9 4254430 4254930 -113607697 - L1ME1 LINE L1 -5 6161 5651 342 256 0 43 chr9 4255023 4255140 -113607487 - LTR33 LTR ERVL 0 521 410 547 333 0 6 chr9 4255224 4255404 -113607223 - LTR33 LTR ERVL -307 214 36 27380 32 3 1 chr9 4255473 4259367 -113603260 - L1PA3 LINE L1 -3 6152 2247 11270 48 1 1 chr9 4259368 4260752 -113601875 + L1PA3 LINE L1 854 2237 -3909 388 157 43 0 chr9 4260754 4260824 -113601803 + HsTC2 DNA Tc2 1823 1895 -3 31 0 0 0 chr9 4261336 4261367 -113601260 + AT_rich Low_complexity Low_complexity 1 31 0 207 114 0 0 chr9 4262088 4262123 -113600504 + (CATG)n Simple_repeat Simple_repeat 1 35 0 186 250 0 0 chr9 4262277 4262333 -113600294 + A-rich Low_complexity Low_complexity 1 56 0 423 346 118 36 chr9 4262340 4262622 -113600005 - L2 LINE L2 -340 2974 2717 1460 192 96 16 chr9 4262622 4262934 -113599693 + MER58B DNA MER1_type 5 341 0 423 346 118 36 chr9 4262934 4263208 -113599419 - L2 LINE L2 -597 2717 2372 511 309 22 45 chr9 4263289 4263512 -113599115 + Tigger8 DNA MER2_type 46 263 -403 207 0 0 0 chr9 4263513 4263536 -113599091 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2124 95 3 11 chr9 4263544 4263828 -113598799 - AluSx SINE Alu -30 282 1 21 0 0 0 chr9 4263916 4263937 -113598690 + AT_rich Low_complexity Low_complexity 1 21 0 3925 156 2 2 chr9 4263986 4264596 -113598031 + L1PA16 LINE L1 25 634 -6215 6745 155 101 87 chr9 4264596 4266267 -113596360 + pTR5 LTR ERV1 745 2438 0 13646 188 12 47 chr9 4266269 4271322 -113591305 + L1PA16 LINE L1 628 5857 -1012 1827 140 4 11 chr9 4271322 4271600 -113591027 + AluSx SINE Alu 1 276 -36 2078 88 0 28 chr9 4271600 4271883 -113590744 - AluY SINE Alu 0 311 37 13646 188 12 47 chr9 4271883 4271895 -113590732 + L1PA16 LINE L1 5856 5867 -1002 295 40 20 20 chr9 4271895 4271945 -113590682 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 13646 188 12 47 chr9 4271945 4272911 -113589716 + L1PA16 LINE L1 5867 6310 -559 406 129 14 0 chr9 4272911 4272979 -113589648 + L1PA10 LINE L1 6094 6164 -4 3131 129 33 25 chr9 4273020 4273572 -113589055 + L1PA16 LINE L1 6305 6860 -9 297 322 70 39 chr9 4273599 4273857 -113588770 + Tigger8 DNA MER2_type 398 663 -3 1975 117 21 3 chr9 4274104 4274394 -113588233 + AluSq SINE Alu 1 295 -18 1829 115 15 8 chr9 4274402 4274662 -113587965 + AluSx SINE Alu 39 300 -12 584 236 98 94 chr9 4274723 4275224 -113587403 + MLT1K LTR MaLR 38 540 -48 183 80 0 0 chr9 4275437 4275462 -113587165 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 446 322 17 51 chr9 4277034 4277270 -113585357 - MIR SINE MIR -26 236 9 249 275 55 55 chr9 4278617 4278708 -113583919 - MIR3 SINE MIR -36 172 82 368 266 65 30 chr9 4278750 4278919 -113583708 + MER20B DNA MER1_type 5 179 -604 964 173 99 15 chr9 4279152 4279354 -113583273 - MER20 DNA MER1_type 0 219 1 359 200 35 35 chr9 4279500 4279585 -113583042 + L2 LINE L2 3227 3311 -2 2779 196 47 7 chr9 4281027 4281640 -113580987 + L1MB8 LINE L1 5526 6163 -15 727 288 86 70 chr9 4281835 4282498 -113580129 - L2 LINE L2 0 3272 2596 280 271 106 40 chr9 4282636 4282787 -113579840 + L2 LINE L2 2927 3087 -185 1019 174 68 0 chr9 4282910 4283100 -113579527 + MER3 DNA MER1_type 6 208 -1 324 322 51 8 chr9 4283100 4283218 -113579409 + L2 LINE L2 3191 3313 0 392 340 106 7 chr9 4283258 4283399 -113579228 - L2 LINE L2 0 3313 3159 315 71 0 0 chr9 4284783 4284825 -113577802 + (TG)n Simple_repeat Simple_repeat 2 43 0 2362 88 0 25 chr9 4285659 4285976 -113576651 + AluY SINE Alu 1 309 -2 25 0 0 0 chr9 4286790 4286815 -113575812 + AT_rich Low_complexity Low_complexity 1 25 0 505 288 118 9 chr9 4287512 4287741 -113574886 + L2 LINE L2 2339 2592 -722 2428 56 17 0 chr9 4287758 4288046 -113574581 - AluY SINE Alu -18 293 1 879 160 32 21 chr9 4288048 4288236 -113574391 + MER3 DNA MER1_type 16 205 -4 378 301 156 6 chr9 4288353 4288526 -113574101 + L2 LINE L2 3111 3309 -4 2702 190 134 40 chr9 4289298 4290081 -113572546 + L1MC4 LINE L1 6701 7573 -469 530 197 30 53 chr9 4290081 4290213 -113572414 + FLAM_A SINE Alu 2 130 -3 2702 190 134 40 chr9 4290213 4290286 -113572341 + L1MC4 LINE L1 7573 7638 -404 1002 164 0 0 chr9 4290301 4290453 -113572174 + AluJb SINE Alu 131 282 -30 180 0 0 0 chr9 4290453 4290473 -113572154 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 800 167 0 147 chr9 4290547 4290825 -113571802 + L1MC4 LINE L1 7819 7995 0 180 329 0 57 chr9 4292589 4292659 -113569968 - MIR3 SINE MIR -42 166 101 225 201 91 0 chr9 4292718 4292783 -113569844 + MIR SINE MIR 36 111 -97 314 353 10 0 chr9 4293644 4293746 -113568881 + MIR3 SINE MIR 85 187 -21 22 56 0 0 chr9 4294427 4294463 -113568164 + AT_rich Low_complexity Low_complexity 1 36 0 439 261 6 72 chr9 4294485 4294655 -113567972 - MIR SINE MIR -49 213 56 216 333 128 8 chr9 4295758 4295875 -113566752 + L2 LINE L2 3141 3271 -1 484 285 40 47 chr9 4296107 4296343 -113566284 + MIR SINE MIR 20 257 -5 192 77 0 0 chr9 4297667 4297693 -113564934 + (A)n Simple_repeat Simple_repeat 1 26 0 377 269 0 0 chr9 4298476 4298584 -113564043 + L1MC4a LINE L1 5809 5916 -1892 24 32 0 0 chr9 4299634 4299665 -113562962 + AT_rich Low_complexity Low_complexity 1 31 0 376 269 75 78 chr9 4300353 4300394 -113562233 + L1MDa LINE L1 1157 1197 -5343 905 207 12 0 chr9 4300394 4300558 -113562069 + FRAM SINE Alu 1 166 0 376 269 75 78 chr9 4300558 4300784 -113561843 + L1MDa LINE L1 1197 1423 -5117 230 259 147 42 chr9 4300854 4300997 -113561630 + L1MDa LINE L1 1490 1647 -4883 250 266 72 0 chr9 4301120 4301259 -113561368 + HAL1b LINE L1 437 1669 -785 1917 164 0 16 chr9 4301564 4301881 -113560746 + AluJo SINE Alu 1 312 0 243 297 72 9 chr9 4301949 4302060 -113560567 + MIR SINE MIR 65 182 -80 8877 124 21 9 chr9 4302810 4304244 -113558383 - Tigger1 DNA MER2_type -967 1451 1 220 231 0 0 chr9 4304266 4304305 -113558322 - MIR SINE MIR -146 116 78 2183 97 0 10 chr9 4304485 4304785 -113557842 + AluSc SINE Alu 1 297 -12 348 127 0 0 chr9 4305653 4305708 -113556919 + (A)n Simple_repeat Simple_repeat 1 55 0 274 190 69 0 chr9 4306146 4306204 -113556423 - L2 LINE L2 -2 3311 3250 480 270 103 88 chr9 4306490 4306946 -113555681 + L1ME4a LINE L1 5517 5979 -142 1806 23 0 0 chr9 4308410 4308627 -113554000 - L1PA4 LINE L1 -255 5900 5684 1430 6 12 6 chr9 4308629 4308798 -113553829 + L1PA4 LINE L1 5986 6155 0 2216 129 3 40 chr9 4309590 4309940 -113552687 - MER1B DNA MER1_type 0 337 1 952 57 0 0 chr9 4310215 4310337 -113552290 + L1PA13 LINE L1 6036 6157 -6 201 121 0 0 chr9 4310416 4310449 -113552178 + (TG)n Simple_repeat Simple_repeat 2 34 0 1021 160 41 78 chr9 4310797 4311090 -113551537 + L1MA4 LINE L1 6016 6297 -3 1901 161 0 22 chr9 4311135 4311452 -113551175 - AluSx SINE Alu -2 310 1 1028 162 80 51 chr9 4312113 4312427 -113550200 + MER33 DNA MER1_type 1 323 -1 243 146 0 0 chr9 4312848 4312889 -113549738 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 243 122 27 chr9 4313054 4313128 -113549499 + L3b LINE CR1 1198 1278 -305 233 402 37 0 chr9 4313144 4313251 -113549376 + L3b LINE CR1 1412 1522 -61 2286 120 0 3 chr9 4314043 4314344 -113548283 - AluSq SINE Alu -13 300 1 730 101 34 0 chr9 4315143 4315262 -113547365 + L1MA5 LINE L1 6176 6298 -2 747 130 130 0 chr9 4315563 4315686 -113546941 + AluSg SINE Alu 1 139 -171 3649 170 89 60 chr9 4366677 4367656 -113494971 + MER51B-int LTR ERV1 6809 7815 -1 2079 109 112 3 chr9 4367658 4367998 -113494629 + MER51B LTR ERV1 1 377 0 592 133 0 0 chr9 4367998 4368081 -113494546 + U6 snRNA snRNA 19 101 -6 182 37 37 0 chr9 4368130 4368157 -113494470 + (TAAAAA)n Simple_repeat Simple_repeat 5 32 0 1027 38 25 19 chr9 4368657 4368815 -113493812 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 983 130 0 7 chr9 4368916 4369062 -113493565 - AluSq/x SINE Alu -168 145 1 25 31 0 0 chr9 4369842 4369874 -113492753 + AT_rich Low_complexity Low_complexity 1 32 0 249 254 0 0 chr9 4369900 4369971 -113492656 + GA-rich Low_complexity Low_complexity 2 72 0 3467 142 22 5 chr9 4371288 4371921 -113490706 - L1 LINE L1 -1286 6279 5636 1371 117 5 33 chr9 4371921 4372134 -113490493 + AluSp SINE Alu 90 296 -17 6566 201 15 38 chr9 4372149 4373068 -113489559 - L1 LINE L1 -1929 5636 4697 2379 103 3 0 chr9 4373068 4373378 -113489249 - AluSp SINE Alu -1 312 2 6566 201 15 38 chr9 4373378 4374759 -113487868 - L1 LINE L1 -2868 4697 3369 332 305 80 40 chr9 4374882 4375082 -113487545 + L2 LINE L2 2609 2816 -498 578 176 61 53 chr9 4375439 4375570 -113487057 + MER45 DNA AcHobo 2 133 -1448 * 956 183 27 40 chr9 4375563 4375787 -113486840 + MER74B LTR ERVL 55 275 -347 23 0 0 0 chr9 4375803 4375826 -113486801 + AT_rich Low_complexity Low_complexity 1 23 0 199 380 62 0 chr9 4376146 4376259 -113486368 + L2 LINE L2 3144 3263 -9 299 313 91 0 chr9 4376547 4376646 -113485981 + MER5B DNA MER1_type 1 108 -70 2010 88 4 0 chr9 4376994 4377244 -113485383 - AluSg SINE Alu -59 251 1 352 264 86 46 chr9 4378139 4378336 -113484291 - L1ME4a LINE L1 -211 5910 5706 2191 100 20 13 chr9 4380111 4380239 -113482388 + AluSc SINE Alu 1 127 -182 2301 106 0 6 chr9 4380239 4380551 -113482076 + AluSg SINE Alu 1 310 0 2191 100 20 13 chr9 4380551 4380723 -113481904 + AluSc SINE Alu 127 303 -6 512 152 13 0 chr9 4380827 4380906 -113481721 + MER33 DNA MER1_type 1 80 -244 216 309 30 19 chr9 4381286 4381435 -113481192 + GA-rich Low_complexity Low_complexity 3 243 0 324 0 0 0 chr9 4383441 4383477 -113479150 + (TG)n Simple_repeat Simple_repeat 2 37 0 2432 65 0 7 chr9 4383855 4384175 -113478452 + AluY SINE Alu 1 311 0 433 267 103 10 chr9 4385094 4385282 -113477345 - MIR SINE MIR -39 223 23 248 310 110 3 chr9 4385342 4385459 -113477168 + MIR SINE MIR 3 128 -80 240 286 114 19 chr9 4385548 4385653 -113476974 + MLT1K LTR MaLR 97 211 -377 387 236 21 64 chr9 4385661 4385801 -113476826 + MLT1L LTR MaLR 147 280 -335 1243 146 41 18 chr9 4386159 4386378 -113476249 - AluJo SINE Alu -3 309 86 14972 89 13 1 chr9 4387211 4389263 -113473364 - L1P LINE L1 -1423 4723 2646 3698 162 25 7 chr9 4389881 4390475 -113472152 + MER6A DNA MER2_type 1 605 0 378 298 149 0 chr9 4390752 4390893 -113471734 - MER5B DNA MER1_type -16 162 1 256 255 7 92 chr9 4391575 4391716 -113470911 + L1MC4 LINE L1 6476 6604 -1438 4165 222 139 10 chr9 4391732 4392935 -113469692 + L1MC3 LINE L1 6699 8014 -2 1517 157 16 12 chr9 4392987 4393242 -113469385 - AluJo SINE Alu -17 295 40 378 0 0 0 chr9 4393436 4393478 -113469149 + (TG)n Simple_repeat Simple_repeat 1 42 0 474 194 134 130 chr9 4393495 4393742 -113468885 + MER102a DNA MER1_type 77 324 -6 183 277 62 0 chr9 4393822 4393887 -113468740 + L2 LINE L2 2322 2390 -924 246 235 0 0 chr9 4394878 4394929 -113467698 + CT-rich Low_complexity Low_complexity 2 52 0 241 330 28 0 chr9 4395549 4395658 -113466969 + GA-rich Low_complexity Low_complexity 3 114 0 1908 125 15 0 chr9 4395782 4396046 -113466581 + AluSx SINE Alu 1 268 -44 218 342 94 8 chr9 4396191 4396308 -113466319 + MIR3 SINE MIR 31 157 -51 375 318 117 31 chr9 4396542 4396765 -113465862 - MIR SINE MIR -14 248 7 2287 83 0 49 chr9 4396789 4397116 -113465511 - AluY SINE Alu 0 311 1 2012 73 0 33 chr9 4397815 4398090 -113464537 + AluY SINE Alu 1 266 -45 31 0 0 0 chr9 4400749 4400780 -113461847 + AT_rich Low_complexity Low_complexity 1 31 0 190 310 40 60 chr9 4401224 4401324 -113461303 + MIR3 SINE MIR 89 186 -22 509 93 58 0 chr9 4402374 4402460 -113460167 - MSTB1 LTR MaLR -341 91 1 487 261 30 37 chr9 4402511 4402645 -113459982 + MER5A DNA MER1_type 57 189 0 332 267 64 41 chr9 4403024 4403196 -113459431 + L1ME4a LINE L1 5574 5749 -372 1167 253 67 75 chr9 4403199 4403705 -113458922 - MLT1J LTR MaLR -7 504 3 331 226 209 43 chr9 4403744 4403978 -113458649 + L1ME4a LINE L1 5803 6075 -46 219 186 0 0 chr9 4405120 4405163 -113457464 + GA-rich Low_complexity Low_complexity 1 43 0 1710 122 61 34 chr9 4405936 4406231 -113456396 - AluSg SINE Alu -7 303 1 1082 266 135 37 chr9 4406589 4407107 -113455520 + L2 LINE L2 1094 1662 -1652 5310 172 23 14 chr9 4407111 4408249 -113454378 - L1P LINE L1 -765 5381 4252 3686 98 7 19 chr9 4408247 4408312 -113454315 + L1PA15 LINE L1 5379 5443 -722 * 1827 148 3 14 chr9 4408312 4408615 -113454012 + AluJo SINE Alu 3 302 0 3686 98 7 19 chr9 4408615 4409086 -113453541 + L1PA15 LINE L1 5443 5910 -255 213 256 61 24 chr9 4409626 4409708 -113452919 - MER91C DNA MER1_type -23 117 33 2808 159 39 4 chr9 4410653 4411144 -113451483 - L1MB3 LINE L1 -3 6180 5673 3167 88 16 7 chr9 4411151 4411574 -113451053 - L1PA11 LINE L1 -3 6171 5745 956 237 11 0 chr9 4411720 4411906 -113450721 - MER5A DNA MER1_type -1 188 1 444 172 0 94 chr9 4411992 4412184 -113450443 + (AGGTG)n Simple_repeat Simple_repeat 2 175 0 1433 224 118 7 chr9 4412514 4412930 -113449697 - MLT1C LTR MaLR 0 467 6 352 338 8 72 chr9 4413161 4413424 -113449203 - L2 LINE L2 -191 3081 2836 477 356 18 18 chr9 4413446 4413671 -113448956 - L3 LINE CR1 -287 1290 1066 185 0 40 0 chr9 4414539 4414564 -113448063 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 451 193 83 121 chr9 4415184 4415449 -113447178 + MER112 DNA MER1_type 1 255 -1 213 220 40 0 chr9 4415977 4416027 -113446600 + CT-rich Low_complexity Low_complexity 3 54 0 225 371 86 9 chr9 4416912 4417028 -113445599 + L2 LINE L2 3187 3311 -2 196 336 8 50 chr9 4417427 4417546 -113445081 + MIR SINE MIR 32 145 -63 2138 122 0 0 chr9 4419251 4419539 -113443088 + AluSx SINE Alu 1 288 -24 448 204 106 18 chr9 4419554 4419667 -113442960 + Charlie4 DNA MER1_type 1839 1961 0 1385 170 15 26 chr9 4420003 4420268 -113442359 + L1PA13 LINE L1 5891 6152 -11 189 0 0 0 chr9 4420268 4420289 -113442338 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2121 129 0 0 chr9 4420310 4420605 -113442022 + AluSx SINE Alu 1 295 -17 194 269 108 9 chr9 4420843 4420959 -113441668 + MIR SINE MIR 9 138 -70 618 247 159 18 chr9 4420961 4421188 -113441439 - MIR SINE MIR -3 259 1 180 0 0 0 chr9 4421836 4421856 -113440771 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2166 132 0 16 chr9 4421856 4422167 -113440460 + AluSx SINE Alu 1 306 -6 445 260 253 4 chr9 4422432 4422713 -113439914 + L2 LINE L2 2303 2653 -661 284 279 13 0 chr9 4422714 4422793 -113439834 - MER116 DNA Mariner 0 80 1 628 310 48 85 chr9 4422798 4423411 -113439216 + L2 LINE L2 2660 3251 -21 338 304 152 23 chr9 4423511 4423682 -113438945 - MIR SINE MIR -50 212 20 243 0 0 0 chr9 4423688 4423715 -113438912 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 422 268 72 102 chr9 4423767 4424002 -113438625 - MER102b DNA MER1_type -11 330 103 763 276 30 42 chr9 4424985 4425184 -113437443 - MLT1J2 LTR MaLR 0 450 253 1383 175 0 43 chr9 4425184 4425222 -113437405 - MER58A DNA MER1_type -2196 224 186 2211 120 3 0 chr9 4425222 4425523 -113437104 + AluSq SINE Alu 1 302 -11 1383 175 0 43 chr9 4425523 4425718 -113436909 - MER58A DNA MER1_type -2234 186 1 763 276 30 42 chr9 4425718 4425783 -113436844 - MLT1J2 LTR MaLR -197 253 189 185 365 48 21 chr9 4426022 4426167 -113436460 - L2 LINE L2 -318 2954 2806 2073 132 0 22 chr9 4426288 4426606 -113436021 - AluSx SINE Alu 0 312 2 2077 157 0 0 chr9 4426809 4427121 -113435506 + AluSx SINE Alu 1 312 0 2234 103 0 3 chr9 4427474 4427775 -113434852 + AluSc SINE Alu 1 300 -9 322 295 156 64 chr9 4427896 4428191 -113434436 - L2 LINE L2 -17 3255 2934 189 171 0 0 chr9 4428242 4428277 -113434350 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 2379 70 0 3 chr9 4429329 4429654 -113432973 + AluY SINE Alu 1 311 0 313 228 272 13 chr9 4429814 4429972 -113432655 + L1ME4a LINE L1 5670 5868 -253 2208 96 13 26 chr9 4430185 4430498 -113432129 + AluSq SINE Alu 1 309 -4 429 279 14 21 chr9 4431040 4431066 -113431561 - MIR SINE MIR -46 216 191 483 69 0 0 chr9 4431066 4431138 -113431489 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 429 279 14 21 chr9 4431138 4431251 -113431376 - MIR SINE MIR -71 191 78 450 162 0 0 chr9 4431255 4431323 -113431304 + Tigger2 DNA MER2_type 2 69 -2649 * 2571 142 56 7 chr9 4431307 4431738 -113430889 + Tigger2 DNA MER2_type 2267 2718 0 196 271 0 0 chr9 4431758 4431806 -113430821 - MIR SINE MIR -208 54 7 2369 125 40 8 chr9 4432239 4432592 -113430035 + THE1B LTR MaLR 1 364 0 270 212 40 30 chr9 4432737 4432836 -113429791 - L1MEd LINE L1 -5029 1090 991 271 321 37 83 chr9 4433729 4433838 -113428789 + MIR SINE MIR 16 119 -89 2263 143 45 31 chr9 4434005 4434116 -113428511 - Tigger1 DNA MER2_type -1 2417 2309 1951 145 21 3 chr9 4434116 4434406 -113428221 + AluSx SINE Alu 1 295 -17 2263 143 45 31 chr9 4434406 4434713 -113427914 - Tigger1 DNA MER2_type -109 2309 1993 * 3164 285 65 0 chr9 4434707 4435353 -113427274 - Tigger1 DNA MER2_type -1687 731 44 1805 176 7 0 chr9 4435355 4435645 -113426982 + AluJo SINE Alu 3 294 -18 2324 100 0 13 chr9 4435838 4436138 -113426489 + AluSc SINE Alu 1 296 -13 1609 269 112 11 chr9 4436505 4436720 -113425907 - L2 LINE L2 0 3313 3121 183 80 0 0 chr9 4436720 4436745 -113425882 + (ATGGTG)n Simple_repeat Simple_repeat 3 27 0 1609 269 112 11 chr9 4436745 4436780 -113425847 - L2 LINE L2 -192 3121 3091 2021 106 0 35 chr9 4436780 4437063 -113425564 + AluSg SINE Alu 1 273 -37 1609 269 112 11 chr9 4437063 4437585 -113425042 - L2 LINE L2 -222 3091 2449 900 243 18 101 chr9 4437585 4437754 -113424873 - L2 LINE L2 -1148 2166 2037 1575 153 0 130 chr9 4437754 4438101 -113424526 + AluJb SINE Alu 1 302 -10 900 243 18 101 chr9 4438101 4438268 -113424359 - L2 LINE L2 -1277 2037 1858 19224 82 226 8 chr9 4439075 4442168 -113420459 + L1PA6 LINE L1 1635 5401 -745 3655 43 2 0 chr9 4442168 4442583 -113420044 + L1PA6 LINE L1 5730 6146 -8 750 162 58 104 chr9 4442766 4443025 -113419602 - L1MB8 LINE L1 -1 6177 5931 650 183 37 43 chr9 4443025 4443189 -113419438 - L1MA6 LINE L1 -232 6068 5906 1521 195 6 38 chr9 4443191 4443504 -113419123 - AluJb SINE Alu -9 303 1 10792 168 42 11 chr9 4443507 4445117 -113417510 - L1MA6 LINE L1 -783 5363 3670 1798 162 7 13 chr9 4445117 4445426 -113417201 - AluJb SINE Alu -5 307 1 10792 168 42 11 chr9 4445426 4445916 -113416711 - L1MA6 LINE L1 -2476 3670 3197 31 26 0 0 chr9 4446272 4446310 -113416317 + AT_rich Low_complexity Low_complexity 1 38 0 2210 125 0 6 chr9 4446310 4446621 -113416006 - AluSx SINE Alu -3 309 1 283 270 51 7 chr9 4446626 4446763 -113415864 - MER113 DNA MER1_type? -378 143 1 2051 141 0 3 chr9 4447192 4447505 -113415122 + AluSx SINE Alu 1 312 0 1188 86 0 7 chr9 4447515 4447667 -113414960 + L1MA1 LINE L1 6148 6298 -4 21 57 0 0 chr9 4447667 4447702 -113414925 + AT_rich Low_complexity Low_complexity 1 35 0 2438 235 37 7 chr9 4447902 4448574 -113414053 + L1M4 LINE L1 3161 3852 -2294 40447 74 9 2 chr9 4448585 4454693 -113407934 + L1PA6 LINE L1 1 6152 -2 347 257 77 11 chr9 4454672 4454855 -113407772 + L1M4 LINE L1 4166 4360 -1786 * 20138 39 10 2 chr9 4454956 4457676 -113404951 + L1P2 LINE L1 2915 5658 -497 247 258 16 0 chr9 4457975 4458037 -113404590 - MIR SINE MIR -123 139 77 224 298 162 10 chr9 4459404 4459602 -113403025 + L2 LINE L2 2094 2321 -993 997 280 22 19 chr9 4459682 4459950 -113402677 + MLT1H1 LTR MaLR 3 271 -284 214 29 57 0 chr9 4459995 4460030 -113402597 + (GA)n Simple_repeat Simple_repeat 1 37 0 216 67 0 0 chr9 4460114 4460144 -113402483 + (TAATG)n Simple_repeat Simple_repeat 3 32 0 350 384 21 11 chr9 4460156 4460346 -113402281 + L2 LINE L2 2566 2757 -557 180 111 0 0 chr9 4460376 4460403 -113402224 + (CCCCAA)n Simple_repeat Simple_repeat 6 32 0 1338 247 36 11 chr9 4460859 4461215 -113401412 - L1ME1 LINE L1 -24 6142 5778 2064 175 53 20 chr9 4461362 4462028 -113400599 - L1ME1 LINE L1 -744 5402 4849 906 198 0 18 chr9 4462032 4462199 -113400428 + FRAM SINE Alu 1 164 -12 2756 208 52 67 chr9 4462210 4462261 -113400366 - L1ME1 LINE L1 -1300 4846 4796 310 28 0 0 chr9 4462261 4462297 -113400330 - MADE1 DNA Mariner 0 80 45 2756 208 52 67 chr9 4462297 4462428 -113400199 - L1ME1 LINE L1 -1350 4796 4665 1946 146 20 3 chr9 4462428 4462730 -113399897 - AluJb SINE Alu -5 307 1 2756 208 52 67 chr9 4462730 4463351 -113399276 - L1ME1 LINE L1 -1481 4665 4019 306 0 0 0 chr9 4463360 4463394 -113399233 + (TG)n Simple_repeat Simple_repeat 2 35 0 2375 159 3 3 chr9 4463443 4463808 -113398819 + MLT1A1 LTR MaLR 1 365 0 638 269 60 96 chr9 4464122 4464569 -113398058 + MLT1K LTR MaLR 156 586 -2 1580 130 0 0 chr9 4464675 4464891 -113397736 - AluSx SINE Alu -96 216 1 264 257 14 14 chr9 4465072 4465146 -113397481 + L2 LINE L2 3195 3268 -4 224 282 15 84 chr9 4465382 4465513 -113397114 - L2 LINE L2 0 3272 3151 933 288 16 0 chr9 4465569 4465812 -113396815 - MIR SINE MIR -15 247 1 230 335 57 67 chr9 4465883 4466092 -113396535 - L2 LINE L2 -214 3058 2852 1230 239 38 35 chr9 4467180 4467548 -113395079 - MLT1J LTR MaLR 0 511 143 1581 164 36 22 chr9 4467607 4467882 -113394745 + AluJb SINE Alu 1 279 -33 260 290 220 5 chr9 4469215 4469401 -113393226 + L2 LINE L2 2921 3146 -167 2118 218 55 0 chr9 4469759 4470228 -113392399 - Charlie4a DNA MER1_type 0 508 14 217 233 178 0 chr9 4470280 4470353 -113392274 + L2 LINE L2 3227 3312 -1 498 116 0 0 chr9 4471332 4471401 -113391226 + MSTA LTR MaLR 360 428 0 281 221 163 0 chr9 4471414 4471500 -113391127 + MER113 DNA MER1_type? 295 394 -127 230 271 0 94 chr9 4471911 4471996 -113390631 + MER5B DNA MER1_type 3 79 -99 373 167 15 0 chr9 4472119 4472185 -113390442 + MSTA LTR MaLR 362 428 0 281 221 163 0 chr9 4472198 4472284 -113390343 + MER113 DNA MER1_type? 295 394 -127 287 224 0 94 chr9 4472696 4472781 -113389846 + MER5B DNA MER1_type 3 79 -99 2293 129 122 38 chr9 4472900 4473063 -113389564 + MSTA LTR MaLR 1 149 -279 2055 106 39 0 chr9 4473063 4473368 -113389259 - AluSx SINE Alu 0 312 1 2293 129 122 38 chr9 4473368 4473599 -113389028 + MSTA LTR MaLR 149 428 0 386 165 142 63 chr9 4473611 4473738 -113388889 + MER113 DNA MER1_type? 295 431 -90 1616 101 5 0 chr9 4474157 4474376 -113388251 - AluSg/x SINE Alu -10 302 83 439 272 146 0 chr9 4474769 4474927 -113387700 + MER20B DNA MER1_type 1 181 -602 693 323 81 9 chr9 4475075 4475419 -113387208 + L1MC/D LINE L1 5454 5822 -1986 2536 179 79 20 chr9 4475697 4475762 -113386865 + Tigger6a DNA MER2_type 390 450 -1147 1769 127 33 23 chr9 4475762 4476062 -113386565 + AluSg SINE Alu 1 303 -7 2536 179 79 20 chr9 4476062 4476594 -113386033 + Tigger6a DNA MER2_type 450 1022 -61 961 211 0 0 chr9 4476595 4476775 -113385852 - AluJb SINE Alu -2 310 131 190 148 37 0 chr9 4476840 4476894 -113385733 + (TA)n Simple_repeat Simple_repeat 2 57 0 29 47 0 0 chr9 4477057 4477100 -113385527 + AT_rich Low_complexity Low_complexity 1 43 0 2099 190 72 11 chr9 4477791 4478248 -113384379 - MER31A LTR ERV1 0 485 1 436 267 50 62 chr9 4478330 4478491 -113384136 - MIR SINE MIR -51 211 53 227 215 15 31 chr9 4479574 4479639 -113382988 - MIR SINE MIR -31 231 168 287 228 0 0 chr9 4479793 4479850 -113382777 - MLT1J2 LTR MaLR 0 450 394 1829 159 0 20 chr9 4481401 4481696 -113380931 + AluSx SINE Alu 1 289 -23 1492 133 27 5 chr9 4482379 4482647 -113379980 - LTR24C LTR ERV1 0 635 316 22 35 0 0 chr9 4482655 4482684 -113379943 + AT_rich Low_complexity Low_complexity 1 29 0 1731 110 16 0 chr9 4482684 4482929 -113379698 - L1MA2 LINE L1 0 6304 6056 2508 56 0 0 chr9 4482929 4483231 -113379396 - AluYa5 SINE Alu -9 302 1 710 181 95 0 chr9 4483902 4484018 -113378609 + FLAM_C SINE Alu 3 129 -14 241 261 15 0 chr9 4484071 4484136 -113378491 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 183 292 0 97 chr9 4484330 4484402 -113378225 - L2 LINE L2 -332 2940 2876 205 348 22 0 chr9 4484432 4484524 -113378103 - L2 LINE L2 -484 2830 2737 2354 76 0 13 chr9 4485121 4485424 -113377203 - AluY SINE Alu -8 303 5 2756 186 117 41 chr9 4486310 4486918 -113375709 - MLT1E1 LTR MaLR 0 654 1 764 138 9 0 chr9 4487585 4487694 -113374933 - FLAM_C SINE Alu -11 132 23 262 290 54 21 chr9 4487699 4487885 -113374742 - L1MEd LINE L1 -3107 3022 2831 338 288 72 16 chr9 4487898 4488148 -113374479 - L1MEd LINE L1 -5043 1076 813 257 341 58 45 chr9 4488345 4488656 -113373971 - L1MEd LINE L1 -5555 564 250 1663 178 31 0 chr9 4488685 4488978 -113373649 + MSTB2 LTR MaLR 7 308 -149 30 27 0 0 chr9 4488983 4489020 -113373607 + AT_rich Low_complexity Low_complexity 1 37 0 1129 149 0 0 chr9 4489039 4489207 -113373420 + MSTB2 LTR MaLR 290 457 0 778 210 32 68 chr9 4489798 4490017 -113372610 + MIR SINE MIR 52 262 0 237 217 142 75 chr9 4490424 4490544 -113372083 - L2 LINE L2 -8 3305 3178 2349 131 16 31 chr9 4490795 4491176 -113371451 + THE1C LTR MaLR 1 375 0 247 241 17 0 chr9 4491308 4491366 -113371261 - MER5A DNA MER1_type -3 186 128 2520 78 0 0 chr9 4491368 4491676 -113370951 + AluY SINE Alu 1 308 -3 21 0 0 0 chr9 4492468 4492489 -113370138 + AT_rich Low_complexity Low_complexity 1 21 0 3755 170 20 27 chr9 4492504 4493271 -113369356 + L1MB7 LINE L1 5202 5969 -215 731 300 18 0 chr9 4493927 4494147 -113368480 + MIR SINE MIR 36 259 -3 1029 193 0 0 chr9 4495188 4495354 -113367273 + FRAM SINE Alu 1 166 0 2244 104 3 25 chr9 4495456 4495773 -113366854 - AluSx SINE Alu -2 310 1 515 179 36 0 chr9 4496264 4496376 -113366251 - L1 LINE L1 -2824 3322 3207 29 47 0 0 chr9 4496664 4496707 -113365920 + AT_rich Low_complexity Low_complexity 1 43 0 207 179 0 0 chr9 4497383 4497422 -113365205 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 201 281 53 61 chr9 4499133 4499247 -113363380 + MIR SINE MIR 99 211 -51 305 326 28 14 chr9 4499276 4499329 -113363298 - MIR3 SINE MIR -5 203 152 1901 164 0 22 chr9 4499329 4499647 -113362980 + AluJo SINE Alu 1 311 -1 305 326 28 14 chr9 4499647 4499737 -113362890 - MIR3 SINE MIR -56 152 58 699 295 52 33 chr9 4499837 4500108 -113362519 - Charlie8 DNA MER1_type -2141 276 1 1730 220 37 8 chr9 4500117 4500472 -113362155 + MLT1A1 LTR MaLR 1 365 0 2115 121 13 16 chr9 4500489 4500795 -113361832 - AluSx SINE Alu -7 305 1 190 379 38 15 chr9 4500795 4500927 -113361700 + L2 LINE L2 2776 2910 -404 1785 166 3 24 chr9 4501035 4501331 -113361296 - AluJo SINE Alu -19 293 4 726 243 0 0 chr9 4502017 4502153 -113360474 - FLAM_C SINE Alu -6 137 2 570 309 40 15 chr9 4502638 4502839 -113359788 + MLT1I LTR MaLR 1 206 -203 7826 169 13 26 chr9 4502955 4504377 -113358250 + L1P LINE L1 11 1414 -4732 288 211 14 0 chr9 4504481 4504552 -113358075 + L1MB3 LINE L1 4744 4815 -1331 565 185 0 11 chr9 4504552 4504644 -113357983 + AluJb SINE Alu 41 131 -181 709 250 92 8 chr9 4504680 4504940 -113357687 + L1MB3 LINE L1 4812 5093 -1053 1182 179 0 23 chr9 4504986 4505204 -113357423 - AluJb SINE Alu -13 299 87 976 177 0 11 chr9 4505275 4505456 -113357171 - AluSg/x SINE Alu -5 307 129 292 261 46 50 chr9 4505513 4505666 -113356961 + L1MB3 LINE L1 5257 5412 -753 708 212 54 163 chr9 4505731 4506203 -113356424 + L1MC4a LINE L1 5692 6101 -1707 848 157 0 30 chr9 4506203 4506337 -113356290 - FLAM_C SINE Alu -3 130 1 708 212 54 163 chr9 4506337 4506397 -113356230 + L1MC4a LINE L1 6101 6166 -1642 2318 108 0 0 chr9 4506643 4506950 -113355677 - AluSq SINE Alu -6 307 1 3455 128 67 92 chr9 4507143 4507711 -113354916 + L1MB3 LINE L1 5450 5996 -187 1943 148 3 3 chr9 4507711 4508002 -113354625 - AluJb SINE Alu -21 291 1 3455 128 67 92 chr9 4508002 4508184 -113354443 + L1MB3 LINE L1 5996 6181 -2 1572 227 108 83 chr9 4508184 4508620 -113354007 + L1MC5 LINE L1 6560 6984 -977 1936 112 21 17 chr9 4508620 4508907 -113353720 + AluSx SINE Alu 7 294 -18 1572 227 108 83 chr9 4508907 4509324 -113353303 + L1MC5 LINE L1 6984 7443 -518 27 0 0 0 chr9 4509336 4509363 -113353264 + AT_rich Low_complexity Low_complexity 1 27 0 383 147 0 29 chr9 4509377 4509445 -113353182 - AluJb SINE Alu -167 135 70 750 120 0 0 chr9 4509546 4509646 -113352981 + AluSg/x SINE Alu 187 286 -26 222 361 0 0 chr9 4510127 4510199 -113352428 + L2 LINE L2 2798 2869 -445 1217 124 36 26 chr9 4510499 4510692 -113351935 - AluJo SINE Alu -117 195 1 224 179 30 60 chr9 4510692 4510759 -113351868 + MIR SINE MIR 104 168 -94 180 255 21 0 chr9 4511141 4511188 -113351439 - L2 LINE L2 0 3272 3225 22 0 0 0 chr9 4511402 4511424 -113351203 + AT_rich Low_complexity Low_complexity 1 22 0 482 237 21 0 chr9 4511957 4512054 -113350573 - MER81 DNA DNA -14 100 2 1937 147 3 0 chr9 4512806 4513098 -113349529 + AluSx SINE Alu 1 293 -19 1969 152 7 7 chr9 4513433 4513743 -113348884 - AluSx SINE Alu -2 310 1 306 106 0 0 chr9 4513877 4513924 -113348703 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 276 320 50 50 chr9 4514126 4514326 -113348301 - L2 LINE L2 -188 3084 2885 1287 192 5 0 chr9 4514419 4514638 -113347989 + AluJo SINE Alu 1 220 -92 738 263 40 11 chr9 4514638 4514813 -113347814 + AluJo SINE Alu 86 265 -47 25 0 0 0 chr9 4514841 4514866 -113347761 + AT_rich Low_complexity Low_complexity 1 25 0 44768 41 0 1 chr9 4514880 4521040 -113341587 - L1PA3 LINE L1 0 6155 2 246 205 0 0 chr9 4521857 4521896 -113340731 - AluJ/monomer SINE Alu -263 39 1 2439 82 3 0 chr9 4521918 4522223 -113340404 - AluSc SINE Alu -3 306 1 2347 91 0 3 chr9 4522249 4522547 -113340080 - AluSx SINE Alu -15 297 1 1180 183 76 55 chr9 4522550 4522840 -113339787 + L1MC4 LINE L1 6777 7072 -970 2224 237 94 5 chr9 4522854 4523462 -113339165 + L1MC4 LINE L1 7241 7902 -140 392 208 0 0 chr9 4523742 4523814 -113338813 + MER94 DNA DNA 2 73 -61 207 0 0 0 chr9 4524068 4524091 -113338536 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 266 335 73 35 chr9 4524094 4524354 -113338273 + L2 LINE L2 1914 2183 -1131 28 0 0 0 chr9 4524354 4524382 -113338245 + AT_rich Low_complexity Low_complexity 1 28 0 759 192 8 0 chr9 4524453 4524573 -113338054 - AluJb SINE Alu -190 122 2 429 278 23 8 chr9 4524600 4524733 -113337894 + L2 LINE L2 2225 2359 -955 1647 228 24 73 chr9 4524894 4525398 -113337229 + MLT2B1 LTR ERVL 1 479 -41 240 111 0 0 chr9 4525385 4525421 -113337206 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 * 242 213 40 13 chr9 4525398 4525480 -113337147 + (CATA)n Simple_repeat Simple_repeat 1 84 0 312 89 54 54 chr9 4525438 4525519 -113337108 + MLT2D LTR ERVL 367 414 0 680 112 0 0 chr9 4526989 4527087 -113335540 - AluSx SINE Alu -6 306 209 1675 98 0 0 chr9 4527126 4527331 -113335296 - AluSx SINE Alu -103 209 5 622 344 6 34 chr9 4527356 4527682 -113334945 + L2 LINE L2 2376 2692 -622 491 221 30 70 chr9 4527727 4527926 -113334701 + L2 LINE L2 3120 3310 -3 2224 75 0 52 chr9 4528185 4528491 -113334136 + AluY SINE Alu 1 290 -21 959 146 0 38 chr9 4528494 4528652 -113333975 + AluSg/x SINE Alu 139 290 -20 1782 172 10 10 chr9 4528677 4528979 -113333648 - AluJo SINE Alu -10 302 1 208 200 67 53 chr9 4529079 4529154 -113333473 - L2 LINE L2 -923 2391 2316 909 225 0 0 chr9 4529387 4529556 -113333071 - FAM SINE Alu -6 169 1 239 173 49 25 chr9 4529657 4529738 -113332889 + L1ME4a LINE L1 6038 6120 -1 2338 80 3 7 chr9 4530258 4530557 -113332070 - AluY SINE Alu -13 298 1 349 351 35 18 chr9 4530767 4530995 -113331632 + L3 LINE CR1 1345 1576 -1 1255 208 112 16 chr9 4531185 4531485 -113331142 - MLT1I LTR MaLR -2 407 92 41 36 0 0 chr9 4531509 4531564 -113331063 + AT_rich Low_complexity Low_complexity 1 55 0 2260 105 6 6 chr9 4531570 4531883 -113330744 + AluSq SINE Alu 1 313 0 1263 28 0 0 chr9 4531930 4532075 -113330552 - L1PA4 LINE L1 -8 6147 6003 1951 23 0 0 chr9 4532075 4532294 -113330333 + L1PA4 LINE L1 5777 5995 -160 519 296 0 0 chr9 4532870 4533005 -113329622 + L1MC/D LINE L1 5421 5555 -2253 1756 201 9 25 chr9 4533016 4533077 -113329550 + MLT2B1 LTR ERVL 1 61 -459 1804 158 0 27 chr9 4533077 4533369 -113329258 + AluJb SINE Alu 1 284 -28 1756 201 9 25 chr9 4533369 4533671 -113328956 + MLT2B1 LTR ERVL 61 409 -111 1468 169 72 14 chr9 4533847 4534125 -113328502 + AluJo SINE Alu 5 298 -4 262 185 0 37 chr9 4534353 4534461 -113328166 + CT-rich Low_complexity Low_complexity 2 105 0 1256 124 27 5 chr9 4534464 4534649 -113327978 - AluSq SINE Alu -124 189 1 2129 131 0 13 chr9 4534744 4535057 -113327570 + AluSx SINE Alu 1 309 -3 318 347 0 0 chr9 4535163 4535261 -113327366 + L1MC/D LINE L1 5465 5562 -2246 321 146 0 0 chr9 4535265 4535320 -113327307 + MLT2B2 LTR ERVL 1 55 -460 1363 138 0 46 chr9 4535326 4535543 -113327084 + AluJb SINE Alu 1 207 -105 1913 162 0 20 chr9 4535897 4536200 -113326427 + AluSq SINE Alu 1 297 -16 2520 184 89 7 chr9 4536312 4536887 -113325740 - L1MB7 LINE L1 -76 6108 5487 1838 131 3 91 chr9 4536887 4537216 -113325411 - AluSx SINE Alu -12 300 1 5732 178 47 6 chr9 4537233 4538263 -113324364 + L1MA2 LINE L1 5 1076 -6489 282 179 0 0 chr9 4538279 4538335 -113324292 + CT-rich Low_complexity Low_complexity 2 57 0 5937 131 29 84 chr9 4539102 4539954 -113322673 + L1MA2 LINE L1 1081 1979 -5744 2305 105 14 0 chr9 4539954 4540249 -113322378 - AluSx SINE Alu -13 299 1 5937 131 29 84 chr9 4540249 4540627 -113322000 + L1MA2 LINE L1 1979 2376 -5347 2282 114 0 3 chr9 4540627 4540934 -113321693 - AluSx SINE Alu -6 306 1 5937 131 29 84 chr9 4540934 4542230 -113320397 + L1MA2 LINE L1 2376 3742 -3981 2811 73 0 5 chr9 4542230 4542598 -113320029 + L1PA8 LINE L1 5807 6172 0 5937 131 29 84 chr9 4542598 4542980 -113319647 + L1MA2 LINE L1 3742 4144 -3579 2627 90 0 37 chr9 4542980 4543285 -113319342 + THE1B LTR MaLR 1 291 -73 2235 119 0 0 chr9 4543285 4543588 -113319039 - AluSg SINE Alu -7 303 1 2627 90 0 37 chr9 4543588 4543660 -113318967 + THE1B LTR MaLR 291 364 0 5937 131 29 84 chr9 4543660 4545262 -113317365 + L1MA2 LINE L1 4144 5833 -1890 1712 158 92 0 chr9 4545262 4545534 -113317093 - AluSx SINE Alu -15 297 1 5937 131 29 84 chr9 4545534 4545690 -113316937 + L1MA2 LINE L1 5833 5996 -1727 1614 144 48 41 chr9 4545690 4545981 -113316646 + AluJb SINE Alu 11 303 -9 5937 131 29 84 chr9 4545981 4546589 -113316038 + L1MA2 LINE L1 5996 6636 -1087 1304 141 0 0 chr9 4546589 4546774 -113315853 + AluSg/x SINE Alu 125 309 -3 5937 131 29 84 chr9 4546774 4548137 -113314490 + L1MA2 LINE L1 6636 7723 0 2209 150 0 0 chr9 4548142 4548503 -113314124 + L1 LINE L1 4644 5004 -1142 1271 203 68 0 chr9 4548503 4548740 -113313887 + AluJb SINE Alu 1 253 -59 21 36 0 0 chr9 4550161 4550189 -113312438 + GC_rich Low_complexity Low_complexity 1 28 0 2136 102 3 20 chr9 4552000 4552304 -113310323 - AluSx SINE Alu -13 299 1 234 195 37 98 chr9 4552320 4552402 -113310225 + L1MC4 LINE L1 6627 6703 -1339 217 274 14 14 chr9 4552547 4552620 -113310007 - L3 LINE CR1 -10 1567 1495 180 305 67 9 chr9 4552703 4552808 -113309819 - L2 LINE L2 -3 3310 3200 3363 136 28 16 chr9 4553017 4553332 -113309295 - L1PB4 LINE L1 -3 6153 5826 1588 197 28 14 chr9 4553332 4553621 -113309006 - AluJo SINE Alu -19 293 1 3363 136 28 16 chr9 4553621 4553873 -113308754 - L1PB4 LINE L1 -330 5826 5579 745 206 63 71 chr9 4553960 4554213 -113308414 + MIR SINE MIR 12 262 0 309 283 83 17 chr9 4554214 4554334 -113308293 - L3 LINE CR1 -232 1345 1218 1209 174 38 5 chr9 4554375 4554587 -113308040 + MER20 DNA MER1_type 1 219 0 196 250 269 19 chr9 4555273 4555381 -113307246 + MIR3 SINE MIR 14 148 -60 183 80 0 0 chr9 4555794 4555819 -113306808 + (T)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr9 4555896 4555917 -113306710 + (TTTTC)n Simple_repeat Simple_repeat 1 21 0 484 179 14 28 chr9 4555917 4556062 -113306565 + CT-rich Low_complexity Low_complexity 3 145 0 665 233 0 0 chr9 4556062 4556195 -113306432 - FLAM_C SINE Alu 0 133 1 2116 141 11 22 chr9 4556230 4556599 -113306028 - L1MD1 LINE L1 0 6242 5878 38 0 0 0 chr9 4556606 4556644 -113305983 + AT_rich Low_complexity Low_complexity 1 38 0 2626 187 129 44 chr9 4556925 4557127 -113305500 - L1MD1 LINE L1 -350 5892 5709 2219 117 10 0 chr9 4557127 4557436 -113305191 - AluSx SINE Alu 0 312 1 2626 187 129 44 chr9 4557436 4557574 -113305053 - L1MD1 LINE L1 -533 5709 5584 2233 110 3 3 chr9 4557574 4557874 -113304753 - AluSx SINE Alu -12 300 1 2626 187 129 44 chr9 4557874 4558094 -113304533 - L1MD1 LINE L1 -658 5584 5384 1578 202 0 26 chr9 4558094 4558401 -113304226 - AluJo SINE Alu -13 299 1 2626 187 129 44 chr9 4558401 4558835 -113303792 - L1MD1 LINE L1 -858 5384 4988 1934 116 13 51 chr9 4558835 4559146 -113303481 - AluSx SINE Alu -13 299 1 2626 187 129 44 chr9 4559146 4559439 -113303188 - L1MD1 LINE L1 -1254 4988 4477 1466 173 3 90 chr9 4559737 4560069 -113302558 - AluJo SINE Alu 0 305 1 298 120 0 40 chr9 4562076 4562126 -113300501 + AluJb SINE Alu 85 132 -170 728 181 52 26 chr9 4562170 4562325 -113300302 + FRAM SINE Alu 9 167 -9 5640 231 72 36 chr9 4562776 4562945 -113299682 - L1MD1 LINE L1 -1656 4490 4329 471 48 0 0 chr9 4562945 4563007 -113299620 + (TG)n Simple_repeat Simple_repeat 2 63 0 5640 231 72 36 chr9 4563007 4563517 -113299110 - L1MD1 LINE L1 -1817 4329 3839 426 39 0 0 chr9 4563517 4563569 -113299058 + (CA)n Simple_repeat Simple_repeat 2 53 0 5640 231 72 36 chr9 4563569 4564447 -113298180 - L1MD1 LINE L1 -2307 3839 2839 2320 103 3 0 chr9 4564447 4564747 -113297880 - AluSp SINE Alu -11 302 2 5640 231 72 36 chr9 4564747 4565229 -113297398 - L1MD1 LINE L1 -3307 2839 2376 1978 140 0 10 chr9 4565229 4565529 -113297098 - AluJb SINE Alu -6 306 10 439 260 95 22 chr9 4565969 4566230 -113296397 - L1MC4a LINE L1 -302 5819 5613 2267 99 3 3 chr9 4566235 4566537 -113296090 - AluSc SINE Alu -7 302 1 2192 122 0 34 chr9 4566737 4567057 -113295570 - AluSx SINE Alu -3 309 1 1929 245 129 21 chr9 4567114 4567827 -113294800 - L1ME3A LINE L1 -4 6166 5377 994 94 61 39 chr9 4567830 4568010 -113294617 - L1MA5 LINE L1 -2 6298 6115 1318 119 40 44 chr9 4568010 4568236 -113294391 + AluJo SINE Alu 85 309 -3 1890 146 46 15 chr9 4568236 4569350 -113293277 - L1MA5 LINE L1 -180 6120 4910 618 195 0 18 chr9 4569356 4569469 -113293158 - AluJo SINE Alu -178 134 24 2717 161 49 60 chr9 4569472 4570116 -113292511 - L1ME3A LINE L1 -1397 4749 4059 6829 46 49 3 chr9 4570116 4571083 -113291544 + L1PA6 LINE L1 5143 6148 -6 2717 161 49 60 chr9 4571083 4571214 -113291413 - L1ME3A LINE L1 -2087 4059 3928 1382 197 66 4 chr9 4571221 4571495 -113291132 - AluJo SINE Alu -21 291 1 3717 202 39 6 chr9 4571495 4572394 -113290233 - L1M2 LINE L1 -4029 3139 2211 2859 200 136 10 chr9 4572424 4573044 -113289583 - L1M2 LINE L1 -6460 708 11 478 240 145 12 chr9 4573041 4573283 -113289344 - L1M4 LINE L1 -749 5397 5124 * 25 0 0 0 chr9 4573476 4573501 -113289126 + AT_rich Low_complexity Low_complexity 1 25 0 2429 66 0 3 chr9 4573755 4574044 -113288583 - AluY SINE Alu -23 288 1 236 29 0 29 chr9 4574066 4574100 -113288527 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 1118 239 79 31 chr9 4574137 4574555 -113288072 - LTR56 LTR ERV1 0 445 8 1323 189 58 0 chr9 4574556 4574842 -113287785 + AluJo SINE Alu 10 310 0 228 333 68 8 chr9 4575353 4575470 -113287157 - MIR SINE MIR -62 146 48 1915 183 86 49 chr9 4575741 4576227 -113286400 + LTR54 LTR ERV1 7 510 0 397 324 7 7 chr9 4576227 4576369 -113286258 - MIR SINE MIR -60 202 61 1781 147 35 7 chr9 4576455 4576741 -113285886 + MER49 LTR ERV1 1 294 -629 1648 179 16 52 chr9 4576761 4576834 -113285793 + MER4D LTR ERV1 554 628 -275 1898 174 26 0 chr9 4576834 4577138 -113285489 - AluJo SINE Alu 0 312 1 1648 179 16 52 chr9 4577138 4577427 -113285200 + MER4D LTR ERV1 628 903 0 2116 145 0 3 chr9 4577878 4578189 -113284438 + AluJo SINE Alu 1 310 -2 410 206 20 0 chr9 4578211 4578313 -113284314 + GA-rich Low_complexity Low_complexity 1 104 0 2193 104 23 7 chr9 4578414 4578721 -113283906 - AluSp SINE Alu -1 312 1 1415 161 0 0 chr9 4578769 4578987 -113283640 - AluJb SINE Alu -94 218 1 510 302 113 8 chr9 4579026 4579274 -113283353 - L1MC4a LINE L1 -1865 5943 5670 256 250 0 16 chr9 4579278 4579342 -113283285 - L1MC4a LINE L1 -2177 5631 5569 485 148 23 0 chr9 4579342 4579430 -113283197 + LTR23 LTR ERV1 1 90 -347 2270 117 0 0 chr9 4579430 4579739 -113282888 + AluSx SINE Alu 1 309 -3 1900 159 0 7 chr9 4579814 4580192 -113282435 - AluSx SINE Alu 0 376 1 1139 183 116 12 chr9 4580287 4580538 -113282089 + LTR23 LTR ERV1 161 437 0 995 229 25 55 chr9 4580538 4580865 -113281762 - L1MC4a LINE L1 -2236 5572 5256 394 221 0 0 chr9 4580867 4580935 -113281692 - MER63 DNA MER1_type 0 1062 995 341 241 13 13 chr9 4580956 4581035 -113281592 - MER63 DNA MER1_type -70 766 688 322 341 40 44 chr9 4581073 4581325 -113281302 - L1MC4a LINE L1 -883 5263 5013 1125 195 65 89 chr9 4581389 4581758 -113280869 + MLT1A2 LTR MaLR 15 374 0 711 251 182 19 chr9 4581945 4582252 -113280375 + MLT1A1 LTR MaLR 1 357 -8 210 204 0 0 chr9 4582252 4582296 -113280331 + L2 LINE L2 2498 2541 -773 2273 119 0 3 chr9 4583092 4583403 -113279224 - AluSg SINE Alu 0 310 1 1812 252 105 16 chr9 4583419 4583983 -113278644 + L2 LINE L2 1928 2541 -773 1591 152 3 69 chr9 4584476 4584766 -113277861 + AluJo SINE Alu 12 282 -30 216 0 0 0 chr9 4584769 4584793 -113277834 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 437 226 110 108 chr9 4584845 4585454 -113277173 + L1MD3 LINE L1 6535 7141 -854 1486 128 83 55 chr9 4585454 4585743 -113276884 - AluJo SINE Alu -15 297 1 437 226 110 108 chr9 4585743 4586483 -113276144 + L1MD3 LINE L1 7141 7994 -1 183 318 91 0 chr9 4586483 4586549 -113276078 + L2 LINE L2 2545 2616 -698 1285 246 58 31 chr9 4586550 4587056 -113275571 - MLT1G LTR MaLR -49 518 1 520 274 73 22 chr9 4587056 4587235 -113275392 + L2 LINE L2 2790 2977 -337 1137 168 0 0 chr9 4587240 4587413 -113275214 - AluSg/x SINE Alu -8 304 132 249 33 0 0 chr9 4587413 4587443 -113275184 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2004 124 0 31 chr9 4587443 4587734 -113274893 - AluSx SINE Alu -30 282 1 1884 135 3 64 chr9 4587744 4588055 -113274572 - AluJb SINE Alu -20 292 1 2051 209 88 2 chr9 4588237 4588667 -113273960 - MLT1C LTR MaLR 0 467 1 1895 134 31 0 chr9 4588750 4589041 -113273586 + AluSx SINE Alu 1 300 -12 265 232 0 0 chr9 4589064 4589120 -113273507 - L2 LINE L2 -4 3309 3254 2024 134 3 17 chr9 4589782 4590080 -113272547 + AluSq SINE Alu 2 295 -18 2186 91 39 0 chr9 4590083 4590368 -113272259 + AluSp SINE Alu 1 296 -17 372 274 99 125 chr9 4591222 4592300 -113270327 - L1M2 LINE L1 -5599 1250 489 215 61 30 0 chr9 4592449 4592482 -113270145 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 230 188 47 16 chr9 4592701 4592765 -113269862 + L1MB7 LINE L1 6119 6184 0 264 100 0 0 chr9 4592879 4592919 -113269708 + (T)n Simple_repeat Simple_repeat 1 40 0 1634 88 0 0 chr9 4593112 4593328 -113269299 - AluY SINE Alu -95 216 1 1657 159 32 11 chr9 4593498 4593781 -113268846 + AluSq SINE Alu 15 303 -10 1914 148 3 19 chr9 4593905 4594216 -113268411 + AluSx SINE Alu 1 306 -6 526 269 91 62 chr9 4594216 4594512 -113268115 - L1ME4a LINE L1 -20 6101 5786 2248 106 0 0 chr9 4594512 4594804 -113267823 + AluSq SINE Alu 1 292 -21 526 269 91 62 chr9 4594804 4594971 -113267656 - L1ME4a LINE L1 -335 5786 5625 244 261 93 81 chr9 4595173 4595236 -113267391 - MIR3 SINE MIR -2 206 145 1605 131 26 22 chr9 4595236 4595504 -113267123 - AluSx SINE Alu -8 304 36 244 261 93 81 chr9 4595504 4595601 -113267026 - MIR3 SINE MIR -63 145 44 1799 149 24 7 chr9 4596000 4596288 -113266339 + AluJo SINE Alu 1 293 -19 276 333 8 50 chr9 4596295 4596415 -113266212 + MIR3 SINE MIR 87 201 -7 739 138 0 0 chr9 4596724 4596840 -113265787 - L1MB8 LINE L1 0 6178 6063 2322 106 0 0 chr9 4596842 4597144 -113265483 - AluSx SINE Alu -10 302 1 45 34 0 0 chr9 4597150 4597209 -113265418 + AT_rich Low_complexity Low_complexity 1 59 0 1866 136 45 14 chr9 4597209 4597495 -113265132 + AluSx SINE Alu 1 295 -17 315 275 11 0 chr9 4597496 4597587 -113265040 + L1MC4 LINE L1 6614 6705 -1337 * 336 238 71 0 chr9 4597529 4597613 -113265014 - L1MC4 LINE L1 -1339 6703 6614 495 123 0 0 chr9 4597616 4597775 -113264852 + (TA)n Simple_repeat Simple_repeat 1 159 0 678 170 0 18 chr9 4597775 4597887 -113264740 - AluJb SINE Alu -201 111 2 22 0 0 0 chr9 4597888 4597910 -113264717 + AT_rich Low_complexity Low_complexity 1 22 0 1790 163 11 30 chr9 4597915 4598276 -113264351 - L1MB8 LINE L1 -109 6069 5716 198 208 0 0 chr9 4598457 4598505 -113264122 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1736 199 47 24 chr9 4598628 4599009 -113263618 - MLT1B LTR MaLR 0 390 1 204 314 97 8 chr9 4599340 4599464 -113263163 - L2 LINE L2 -1481 1833 1699 1573 146 8 16 chr9 4599872 4600119 -113262508 + AluJo SINE Alu 6 250 -62 2240 174 98 5 chr9 4600538 4600765 -113261862 - Tigger2a DNA MER2_type -2274 434 230 1782 174 10 10 chr9 4600765 4601075 -113261552 + AluJo SINE Alu 1 310 -2 2240 174 98 5 chr9 4601075 4601243 -113261384 - Tigger2a DNA MER2_type -2478 230 2 2806 102 10 5 chr9 4601506 4601900 -113260727 + L1PA13 LINE L1 5766 6161 -2 1001 158 0 0 chr9 4602387 4602539 -113260088 - AluJb SINE Alu -5 307 156 21 36 0 0 chr9 4602547 4602575 -113260052 + AT_rich Low_complexity Low_complexity 1 28 0 3401 149 16 17 chr9 4602647 4603161 -113259466 - L1MB7 LINE L1 0 6184 5670 1525 183 27 23 chr9 4603161 4603462 -113259165 - AluJo SINE Alu -10 302 1 3401 149 16 17 chr9 4603462 4603524 -113259103 - L1MB7 LINE L1 -514 5670 5609 836 178 34 0 chr9 4603544 4603690 -113258937 - FRAM SINE Alu -31 145 1 2164 119 3 0 chr9 4603705 4603999 -113258628 + AluSq SINE Alu 1 295 -18 405 177 0 0 chr9 4603999 4604078 -113258549 + (TA)n Simple_repeat Simple_repeat 1 79 0 339 300 0 0 chr9 4604080 4604170 -113258457 + L1MC4 LINE L1 6614 6703 -1339 771 171 0 0 chr9 4604183 4604300 -113258327 - FLAM_C SINE Alu -15 118 2 677 192 16 0 chr9 4604301 4604423 -113258204 - L1MB8 LINE L1 -558 5616 5490 2122 122 3 3 chr9 4604423 4604726 -113257901 - AluSx SINE Alu -9 303 1 677 192 16 0 chr9 4604726 4604740 -113257887 - L1MB8 LINE L1 -684 5490 5478 16175 112 23 6 chr9 4604751 4607103 -113255524 + Tigger1 DNA MER2_type 26 2418 0 1088 159 78 31 chr9 4607107 4607396 -113255231 - L1MB8 LINE L1 -694 5484 5188 975 65 16 8 chr9 4607405 4607529 -113255098 - AluSq/x SINE Alu -187 125 1 1474 229 23 30 chr9 4607529 4607699 -113254928 - L1MB8 LINE L1 -949 5197 5027 2260 92 17 7 chr9 4607699 4607994 -113254633 + AluSg SINE Alu 1 298 -12 1474 229 23 30 chr9 4607994 4608216 -113254411 - L1MB8 LINE L1 -1119 5027 4808 1547 156 0 0 chr9 4608218 4608443 -113254184 - AluJb SINE Alu -11 301 77 460 241 86 0 chr9 4608453 4608569 -113254058 - L1MB8 LINE L1 -1941 4205 4080 247 276 35 35 chr9 4609040 4609156 -113253471 + L1ME LINE L1 5549 5664 -457 400 229 42 35 chr9 4609752 4609896 -113252731 - L1ME4a LINE L1 -56 6065 5921 1992 117 3 47 chr9 4609924 4610241 -113252386 - AluSx SINE Alu -9 303 1 219 294 71 24 chr9 4610636 4610721 -113251906 + MIR3 SINE MIR 90 178 -30 255 231 87 29 chr9 4611143 4611247 -113251380 - L2 LINE L2 -91 3222 3113 2257 108 3 0 chr9 4611257 4611553 -113251074 + AluSx SINE Alu 1 297 -15 2019 143 0 7 chr9 4611594 4611894 -113250733 - AluSx SINE Alu -13 299 2 1929 137 3 20 chr9 4612314 4612614 -113250013 - AluJo SINE Alu -17 295 1 1978 115 20 7 chr9 4612937 4613232 -113249395 - AluSx SINE Alu -13 299 1 773 238 40 62 chr9 4613271 4613544 -113249083 - MLT2B1 LTR ERVL -253 267 1 201 179 26 0 chr9 4613663 4613702 -113248925 + CT-rich Low_complexity Low_complexity 2 41 0 230 229 43 29 chr9 4614077 4614147 -113248480 - L2 LINE L2 -2 3270 3200 340 248 19 38 chr9 4614683 4614788 -113247839 - MLT1K LTR MaLR -27 561 459 1856 173 127 0 chr9 4615132 4615455 -113247172 - MER47A DNA MER2_type 0 366 3 593 233 219 5 chr9 4615791 4616006 -113246621 + MIR SINE MIR 2 262 0 1598 177 23 23 chr9 4616068 4616367 -113246260 - AluJo SINE Alu -13 299 1 492 296 46 15 chr9 4616468 4616664 -113245963 + MIR SINE MIR 61 262 0 182 231 96 0 chr9 4616676 4616728 -113245899 - L2 LINE L2 -45 3227 3171 839 232 170 26 chr9 4616818 4617220 -113245407 - MLT1K LTR MaLR -37 551 20 1733 174 7 20 chr9 4617319 4617624 -113245003 + AluJb SINE Alu 1 301 -11 2242 111 7 0 chr9 4617772 4618079 -113244548 - AluSx SINE Alu -3 309 1 441 296 0 0 chr9 4618820 4619127 -113243500 + (TG)n Simple_repeat Simple_repeat 1 307 0 260 314 0 0 chr9 4619606 4619676 -113242951 + MIR SINE MIR 180 249 -13 1627 178 39 0 chr9 4622089 4622375 -113240252 - AluJo SINE Alu -11 301 5 2520 26 0 40 chr9 4622497 4622800 -113239827 + AluY SINE Alu 1 291 -20 243 0 0 0 chr9 4623177 4623204 -113239423 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2072 80 0 4 chr9 4624107 4624370 -113238257 - AluSc SINE Alu -47 262 1 28 29 0 0 chr9 4624620 4624655 -113237972 + AT_rich Low_complexity Low_complexity 1 35 0 198 200 67 50 chr9 4627110 4627170 -113235457 + MIR SINE MIR 2 62 -200 23 0 0 0 chr9 4627815 4627838 -113234789 + AT_rich Low_complexity Low_complexity 1 23 0 359 269 107 13 chr9 4628711 4628860 -113233767 + MIR SINE MIR 56 218 -44 2497 48 0 25 chr9 4630102 4630416 -113232211 - AluY SINE Alu -5 306 1 636 244 73 6 chr9 4632186 4632350 -113230277 + MIR SINE MIR 85 259 -3 1916 159 28 0 chr9 4632568 4632857 -113229770 + AluJo SINE Alu 1 297 -15 33 25 0 0 chr9 4633006 4633046 -113229581 + AT_rich Low_complexity Low_complexity 1 40 0 274 257 0 0 chr9 4633069 4633143 -113229484 - L1ME4a LINE L1 -70 6051 5978 1035 154 135 5 chr9 4633585 4633793 -113228834 - MER46A DNA MER2_type 0 236 2 1208 141 71 24 chr9 4633899 4634196 -113228431 - Charlie1 DNA MER1_type -31 2730 2420 625 210 29 0 chr9 4634194 4634332 -113228295 - Charlie1 DNA MER1_type -2615 146 5 * 450 261 85 13 chr9 4634335 4634488 -113228139 - L1ME4a LINE L1 -505 5657 5494 300 228 97 28 chr9 4634595 4634740 -113227887 - L1ME4a LINE L1 -254 5867 5713 351 293 75 45 chr9 4634741 4634874 -113227753 + L2 LINE L2 3136 3272 0 22 0 0 0 chr9 4635288 4635310 -113227317 + AT_rich Low_complexity Low_complexity 1 22 0 710 179 0 30 chr9 4636519 4636653 -113225974 - FLAM_C SINE Alu -2 131 2 2096 99 18 7 chr9 4636930 4637212 -113225415 + AluSx SINE Alu 1 285 -27 1481 194 3 26 chr9 4637219 4637523 -113225104 + AluJo SINE Alu 1 297 -15 748 189 69 19 chr9 4637662 4637821 -113224806 + AluJo SINE Alu 122 288 -24 2249 117 3 0 chr9 4638127 4638425 -113224202 - AluSg SINE Alu -11 299 1 1617 209 3 0 chr9 4638640 4638927 -113223700 + AluJo SINE Alu 5 292 -20 875 236 100 9 chr9 4639026 4639255 -113223372 + MIR SINE MIR 1 250 -12 22 0 0 0 chr9 4639533 4639555 -113223072 + AT_rich Low_complexity Low_complexity 1 22 0 1693 197 3 3 chr9 4639555 4639855 -113222772 - AluJb SINE Alu -12 300 1 377 208 176 0 chr9 4640283 4640408 -113222219 - L1ME4a LINE L1 -1 6120 5974 2370 76 0 0 chr9 4640454 4640743 -113221884 + AluSq SINE Alu 9 297 -16 30 0 0 0 chr9 4641139 4641169 -113221458 + AT_rich Low_complexity Low_complexity 1 30 0 2166 78 30 0 chr9 4641546 4641842 -113220785 + L1PA12 LINE L1 5860 6164 -4 365 316 23 11 chr9 4642067 4642244 -113220383 + ERVL LTR ERVL 2781 2959 -2805 1011 303 63 30 chr9 4642397 4642922 -113219705 + ERVL LTR ERVL 4097 4638 -1126 605 269 48 32 chr9 4643078 4643327 -113219300 + ERVL LTR ERVL 4663 4915 -849 22 35 0 0 chr9 4643504 4643533 -113219094 + AT_rich Low_complexity Low_complexity 1 29 0 295 332 101 10 chr9 4643699 4643898 -113218729 + L2 LINE L2 2835 3051 -221 22 56 0 0 chr9 4644224 4644260 -113218367 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 4644653 4644675 -113217952 + AT_rich Low_complexity Low_complexity 1 22 0 2256 89 0 7 chr9 4644718 4645009 -113217618 + AluSg SINE Alu 1 289 -21 2197 138 0 0 chr9 4645314 4645619 -113217008 - AluJo SINE Alu -7 305 1 1638 127 58 7 chr9 4645939 4646247 -113216380 - MER33 DNA MER1_type 0 324 1 1663 183 10 28 chr9 4646845 4647135 -113215492 - AluJb SINE Alu -27 285 1 279 269 0 26 chr9 4647417 4647495 -113215132 + MIR3 SINE MIR 97 172 -36 217 328 0 0 chr9 4648369 4648427 -113214200 + L2 LINE L2 3207 3264 -8 2135 124 0 0 chr9 4648729 4649012 -113213615 - AluSc SINE Alu -26 283 1 225 361 0 0 chr9 4649409 4649481 -113213146 + L2 LINE L2 2798 2869 -445 229 139 66 7 chr9 4649865 4650016 -113212611 + (TA)n Simple_repeat Simple_repeat 2 161 0 202 146 62 0 chr9 4650018 4650066 -113212561 + (TATAA)n Simple_repeat Simple_repeat 3 53 0 2104 115 0 50 chr9 4650243 4650391 -113212236 + AluSx SINE Alu 1 126 -186 2287 85 7 3 chr9 4650391 4650686 -113211941 + AluY SINE Alu 1 296 -15 2104 115 0 50 chr9 4650686 4650860 -113211767 + AluSx SINE Alu 126 307 -5 1595 85 42 5 chr9 4651367 4651579 -113211048 - AluSp SINE Alu -19 294 75 326 274 59 39 chr9 4651584 4651686 -113210941 + MIR3 SINE MIR 3 106 -102 323 329 129 7 chr9 4654000 4654140 -113208487 - MIR SINE MIR -89 173 17 286 315 88 35 chr9 4654275 4654615 -113208012 + L1MC4a LINE L1 5538 5895 -1913 342 0 0 0 chr9 4654675 4654713 -113207914 + (TG)n Simple_repeat Simple_repeat 2 39 0 258 231 0 0 chr9 4655052 4655104 -113207523 + MIR SINE MIR 204 255 -7 1212 290 159 15 chr9 4655105 4655716 -113206911 + L2 LINE L2 2036 2734 -580 291 296 133 0 chr9 4655727 4655862 -113206765 - MLT1L LTR MaLR -13 602 450 1566 139 120 8 chr9 4655863 4656129 -113206498 + AluSg1 SINE Alu 1 296 -13 353 147 0 15 chr9 4656129 4656197 -113206430 + (GGGAA)n Simple_repeat Simple_repeat 2 68 0 498 293 26 60 chr9 4656197 4656463 -113206164 - MLT1L LTR MaLR -153 462 206 328 250 11 11 chr9 4656487 4656579 -113206048 - MLT1L LTR MaLR -523 92 1 2270 88 0 29 chr9 4656633 4656940 -113205687 - AluSx SINE Alu -14 298 1 779 319 74 32 chr9 4656946 4657417 -113205210 + L2 LINE L2 2823 3313 0 716 200 8 0 chr9 4657609 4657729 -113204898 - FLAM_A SINE Alu -12 121 1 2419 83 0 0 chr9 4658273 4658575 -113204052 + AluY SINE Alu 1 302 -9 1626 183 14 10 chr9 4658773 4659062 -113203565 - AluJo SINE Alu -22 290 1 251 259 41 104 chr9 4659083 4659390 -113203237 - L1MC5 LINE L1 -27 8015 7685 2239 116 0 3 chr9 4659390 4659693 -113202934 + AluSp SINE Alu 1 302 -11 251 259 41 104 chr9 4659693 4659893 -113202734 - L1MC5 LINE L1 -357 7685 7474 2287 88 0 7 chr9 4659918 4660202 -113202425 - AluSp SINE Alu -31 282 1 276 100 0 0 chr9 4660203 4660243 -113202384 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 786 182 8 0 chr9 4660243 4660375 -113202252 - AluJb SINE Alu -30 282 150 260 211 40 0 chr9 4660406 4660482 -113202145 - L1MC5 LINE L1 -553 7408 7330 629 212 62 36 chr9 4660482 4660626 -113202001 + MER3 DNA MER1_type 1 154 -55 2112 109 0 3 chr9 4660626 4660931 -113201696 + AluSq SINE Alu 1 304 0 629 212 62 36 chr9 4660931 4660978 -113201649 + MER3 DNA MER1_type 154 198 -11 329 274 10 20 chr9 4661167 4661269 -113201358 + L1MCa LINE L1 1968 2068 -4358 2256 111 3 0 chr9 4661286 4661592 -113201035 - AluSx SINE Alu -5 307 1 660 263 158 33 chr9 4662785 4663129 -113199498 - L1MC4a LINE L1 -1869 5939 5537 1645 174 126 51 chr9 4663129 4663338 -113199289 + MLT1D LTR MaLR 1 193 -312 2399 110 0 0 chr9 4663338 4663647 -113198980 + AluSx SINE Alu 1 309 -3 1645 174 126 51 chr9 4663647 4663907 -113198720 + MLT1D LTR MaLR 193 505 0 660 263 158 33 chr9 4663907 4663961 -113198666 - L1MC4a LINE L1 -2271 5537 5491 26 82 0 0 chr9 4664000 4664061 -113198566 + AT_rich Low_complexity Low_complexity 1 61 0 287 299 226 0 chr9 4664859 4665076 -113197551 - L2 LINE L2 -1046 2268 2003 479 296 145 0 chr9 4665183 4665369 -113197258 + MIR SINE MIR 47 259 -3 300 298 132 85 chr9 4670059 4670543 -113192084 - L1M2 LINE L1 -5926 923 417 514 186 0 35 chr9 4671863 4671976 -113190651 - L1PA10 LINE L1 -1 6167 6059 8227 47 1 2 chr9 4671976 4673691 -113188936 - L1PA6 LINE L1 -154 6000 4289 1496 128 163 8 chr9 4674047 4674305 -113188322 - AluSg1 SINE Alu -11 298 1 907 233 124 8 chr9 4674799 4675048 -113187579 - MLT1C LTR MaLR 0 467 190 584 220 61 0 chr9 4675066 4675198 -113187429 + MER93b LTR ERV1 18 157 -216 624 227 59 74 chr9 4675198 4675454 -113187173 + MER93b LTR ERV1 117 368 -5 921 162 30 35 chr9 4675484 4675682 -113186945 - MLT1C LTR MaLR -270 197 1 185 357 0 0 chr9 4676174 4676230 -113186397 - L2 LINE L2 -3 3269 3214 615 27 0 0 chr9 4676505 4676578 -113186049 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 1733 173 0 0 chr9 4676580 4676858 -113185769 - AluJb SINE Alu -33 279 2 2360 108 0 6 chr9 4677165 4677479 -113185148 + AluSx SINE Alu 1 312 0 2298 167 28 7 chr9 4677562 4677998 -113184629 - L1MB7 LINE L1 -124 6060 5616 3791 117 130 7 chr9 4678041 4678740 -113183887 + LTR1 LTR ERV1 1 785 0 7236 181 67 34 chr9 4678740 4679053 -113183574 - L1MB7 LINE L1 -565 5619 5318 1810 168 3 25 chr9 4679053 4679368 -113183259 - AluJo SINE Alu -4 308 1 7236 181 67 34 chr9 4679368 4680145 -113182482 - L1MB7 LINE L1 -866 5318 4568 2181 116 30 0 chr9 4680145 4680448 -113182179 - AluSp SINE Alu -1 312 1 7236 181 67 34 chr9 4680448 4680608 -113182019 - L1MB7 LINE L1 -1616 4568 4415 226 146 0 0 chr9 4680608 4680656 -113181971 - AluSp SINE Alu 0 303 256 1631 99 0 5 chr9 4680656 4680877 -113181750 - AluSp SINE Alu -93 220 1 7236 181 67 34 chr9 4680877 4681798 -113180829 - L1MB7 LINE L1 -1768 4416 3341 988 207 0 16 chr9 4681817 4682005 -113180622 + AluJb SINE Alu 108 292 -20 1970 143 27 0 chr9 4682015 4682140 -113180487 + AluSx SINE Alu 2 122 -190 459 0 0 0 chr9 4682140 4682191 -113180436 + (CA)n Simple_repeat Simple_repeat 2 52 0 1970 143 27 0 chr9 4682191 4682358 -113180269 + AluSx SINE Alu 122 302 -10 943 210 8 8 chr9 4682360 4682627 -113180000 - L1MB7 LINE L1 -2817 3329 3063 580 286 10 41 chr9 4683382 4683578 -113179049 + MIR SINE MIR 2 191 -71 4521 93 10 42 chr9 4683597 4683920 -113178707 + L1PB1 LINE L1 5465 5797 -354 297 0 0 0 chr9 4683920 4683953 -113178674 + (TG)n Simple_repeat Simple_repeat 2 34 0 4521 93 10 42 chr9 4683953 4684282 -113178345 + L1PB1 LINE L1 5797 6096 -55 2349 42 0 3 chr9 4684282 4684598 -113178029 - AluY SINE Alu 0 315 1 4521 93 10 42 chr9 4684598 4684653 -113177974 + L1PB1 LINE L1 6096 6151 0 2091 147 0 0 chr9 4684881 4685180 -113177447 + AluSx SINE Alu 1 299 -13 2215 121 3 0 chr9 4685401 4685706 -113176921 - AluSx SINE Alu -6 306 1 1965 115 82 6 chr9 4685937 4686267 -113176360 - L1PA13 LINE L1 -1 6162 5808 198 71 0 0 chr9 4686369 4686397 -113176230 + (TTA)n Simple_repeat Simple_repeat 1 28 0 25 51 0 0 chr9 4686774 4686813 -113175814 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr9 4686870 4686892 -113175735 + (TG)n Simple_repeat Simple_repeat 2 23 0 386 259 12 0 chr9 4686930 4687015 -113175612 + MER58B DNA MER1_type 4 89 -252 1814 182 43 0 chr9 4687015 4687383 -113175244 - L1MB7 LINE L1 -16 6168 5785 1966 111 40 12 chr9 4687383 4687708 -113174919 + MSTC LTR MaLR 95 428 0 604 162 115 0 chr9 4687708 4687856 -113174771 - L1MB7 LINE L1 -448 5736 5572 1000 170 71 20 chr9 4687856 4688109 -113174518 + MER58B DNA MER1_type 76 341 0 351 0 0 0 chr9 4688291 4688330 -113174297 + (TG)n Simple_repeat Simple_repeat 1 39 0 252 0 0 0 chr9 4688329 4688357 -113174270 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1298 166 89 76 chr9 4688649 4688951 -113173676 - AluJb SINE Alu -6 306 1 1994 136 0 19 chr9 4688985 4689293 -113173334 - AluSx SINE Alu -10 302 1 2040 135 0 0 chr9 4689722 4690010 -113172617 + AluSg SINE Alu 13 300 -10 1701 170 18 0 chr9 4690948 4691250 -113171377 + AluJb SINE Alu 1 307 0 1309 168 31 8 chr9 4691343 4691599 -113171028 - MER2 DNA MER2_type -1 344 83 538 194 0 20 chr9 4691656 4691754 -113170873 - MER2 DNA MER2_type -248 97 2 391 272 34 60 chr9 4693025 4693199 -113169428 + MIR SINE MIR 28 197 -11 531 340 15 15 chr9 4693870 4694067 -113168560 - MIR SINE MIR -34 228 32 1265 102 0 0 chr9 4694077 4694243 -113168384 + AluSg/x SINE Alu 145 310 0 2079 115 0 3 chr9 4694503 4694812 -113167815 + AluSq SINE Alu 1 308 0 420 250 24 40 chr9 4694928 4695052 -113167575 + L2 LINE L2 3151 3272 0 304 291 13 0 chr9 4695082 4695161 -113167466 - MIR3 SINE MIR -20 188 109 237 343 14 0 chr9 4695231 4695304 -113167323 - L2 LINE L2 -1 3312 3239 851 302 74 30 chr9 4695451 4696122 -113166505 - L2 LINE L2 -18 3295 2590 614 244 67 0 chr9 4696550 4696759 -113165868 - MER20B DNA MER1_type 0 783 561 929 216 140 84 chr9 4696778 4697171 -113165456 - MER20B DNA MER1_type -366 417 3 221 336 136 18 chr9 4697225 4697335 -113165292 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4699106 4699127 -113163500 + AT_rich Low_complexity Low_complexity 1 21 0 2380 87 0 0 chr9 4700404 4700702 -113161925 - AluSx SINE Alu -14 298 1 1304 125 100 0 chr9 4700781 4700981 -113161646 + AluSg/x SINE Alu 86 305 -7 602 332 16 24 chr9 4700982 4701235 -113161392 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4701696 4701719 -113160908 + AT_rich Low_complexity Low_complexity 1 23 0 832 231 95 18 chr9 4702032 4702253 -113160374 + MIR SINE MIR 9 246 -16 1585 240 41 7 chr9 4702720 4703133 -113159494 - L1ME1 LINE L1 -25 6141 5715 278 148 0 82 chr9 4703135 4703196 -113159431 + MIR SINE MIR 120 175 -87 231 219 16 0 chr9 4703202 4703266 -113159361 - L1MC4 LINE L1 -1323 6719 6655 622 258 145 14 chr9 4703484 4703705 -113158922 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4704264 4704288 -113158339 + AT_rich Low_complexity Low_complexity 1 24 0 1724 127 0 4 chr9 4704302 4704561 -113158066 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4704566 4704603 -113158024 + AT_rich Low_complexity Low_complexity 1 37 0 3804 100 32 12 chr9 4704607 4705208 -113157419 - L1MA3 LINE L1 -1 6304 5692 467 156 13 0 chr9 4705853 4705930 -113156697 - AluJ/FLAM SINE Alu -228 84 7 519 240 20 41 chr9 4706096 4706292 -113156335 - L1ME4a LINE L1 -188 5933 5742 1044 241 130 50 chr9 4706297 4707033 -113155594 - LTR50 LTR ERVL 0 795 1 237 150 0 0 chr9 4707092 4707132 -113155495 - L1ME4a LINE L1 -459 5662 5623 2293 111 0 0 chr9 4708267 4708565 -113154062 - AluSx SINE Alu -9 303 6 346 320 74 25 chr9 4708590 4708834 -113153793 - L1ME4a LINE L1 -49 6072 5817 2403 73 0 0 chr9 4709701 4710018 -113152609 - AluSp SINE Alu 0 317 1 318 311 75 12 chr9 4710251 4710412 -113152215 - L3b LINE CR1 -212 1371 1201 581 188 38 0 chr9 4711082 4711215 -113151412 - Charlie1 DNA MER1_type -5 2756 2619 * 1060 173 17 35 chr9 4711208 4711228 -113151399 - Charlie1 DNA MER1_type -2534 227 208 2373 94 3 0 chr9 4711228 4711527 -113151100 + AluSp SINE Alu 1 300 -13 1060 173 17 35 chr9 4711527 4711737 -113150890 - Charlie1 DNA MER1_type -2553 208 1 208 260 29 96 chr9 4712278 4712382 -113150245 - MIR SINE MIR -75 133 37 712 196 141 0 chr9 4712470 4712633 -113149994 - MER5A DNA MER1_type 0 189 4 2278 91 3 3 chr9 4713571 4713867 -113148760 + AluSx SINE Alu 14 309 -3 313 238 114 0 chr9 4715380 4715485 -113147142 - L1ME4a LINE L1 -27 6094 5978 487 246 36 0 chr9 4715609 4715719 -113146908 - MER81 DNA DNA 0 114 1 2357 92 3 0 chr9 4716131 4716435 -113146192 + AluSp SINE Alu 1 305 -8 212 270 54 14 chr9 4716636 4716710 -113145917 + MIR SINE MIR 39 115 -93 1838 145 24 17 chr9 4716730 4717019 -113145608 - AluJb SINE Alu -21 291 1 227 179 30 60 chr9 4717019 4717086 -113145541 + MIR SINE MIR 104 168 -94 22 0 0 0 chr9 4717729 4717751 -113144876 + AT_rich Low_complexity Low_complexity 1 22 0 451 231 11 0 chr9 4718290 4718381 -113144246 - MER81 DNA DNA -21 93 2 1946 147 3 0 chr9 4719133 4719425 -113143202 + AluSx SINE Alu 1 293 -19 1993 152 7 7 chr9 4719760 4720070 -113142557 - AluSx SINE Alu -2 310 1 270 116 0 0 chr9 4720204 4720247 -113142380 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 290 355 80 57 chr9 4720247 4720735 -113141892 - L2 LINE L2 -2 3311 2813 1308 183 141 8 chr9 4720742 4721004 -113141623 + AluJo SINE Alu 1 297 -5 624 263 0 15 chr9 4721004 4721137 -113141490 + AluJo/FRAM SINE Alu 135 265 -47 25 0 0 0 chr9 4721165 4721190 -113141437 + AT_rich Low_complexity Low_complexity 1 25 0 40713 32 24 1 chr9 4721204 4727216 -113135411 - L1PA3 LINE L1 0 6155 2 21 0 0 0 chr9 4727225 4727246 -113135381 + AT_rich Low_complexity Low_complexity 1 21 0 225 263 66 46 chr9 4727260 4727412 -113135215 - L1ME4a LINE L1 -6 6115 5961 313 301 38 30 chr9 4727420 4727553 -113135074 - L1ME4a LINE L1 -193 5928 5795 208 208 51 168 chr9 4727721 4727918 -113134709 - L2 LINE L2 -107 3165 2992 730 163 16 8 chr9 4728469 4728598 -113134029 + FLAM_C SINE Alu 1 130 -3 189 254 102 0 chr9 4728920 4728979 -113133648 + L3 LINE CR1 1189 1253 -324 486 283 133 52 chr9 4729022 4729422 -113133205 + L2 LINE L2 2828 3259 -54 2272 107 17 0 chr9 4729566 4729866 -113132761 - AluSg SINE Alu -5 305 1 648 191 27 48 chr9 4730079 4730226 -113132401 - MIR SINE MIR -55 207 64 427 131 0 24 chr9 4731760 4731844 -113130783 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 228 213 197 57 chr9 4731902 4732024 -113130603 - MIR SINE MIR -43 219 81 258 106 0 0 chr9 4732508 4732555 -113130072 + (TC)n Simple_repeat Simple_repeat 1 47 0 2014 165 46 6 chr9 4733167 4733518 -113129109 + MLT1A1 LTR MaLR 1 365 0 217 180 0 66 chr9 4733615 4733676 -113128951 + A-rich Low_complexity Low_complexity 3 59 0 2080 135 5 53 chr9 4733721 4734100 -113128527 + MER46B DNA MER2_type 1 236 0 450 0 0 0 chr9 4735646 4735696 -113126931 + (TG)n Simple_repeat Simple_repeat 2 51 0 765 146 7 42 chr9 4735697 4735841 -113126786 - FLAM_C SINE Alu 0 143 5 835 254 42 5 chr9 4735845 4736058 -113126569 + MIR SINE MIR 42 262 0 2358 69 13 10 chr9 4738505 4738809 -113123818 + AluY SINE Alu 2 306 -5 180 281 0 0 chr9 4738994 4739058 -113123569 - L2 LINE L2 -1064 2250 2187 286 258 118 55 chr9 4739238 4739509 -113123118 - L2 LINE L2 -1282 2032 1745 579 272 19 0 chr9 4739889 4740051 -113122576 + MIR SINE MIR 77 241 -21 937 197 95 61 chr9 4740072 4740336 -113122291 - L1MA10 LINE L1 0 6334 6062 565 250 41 6 chr9 4740465 4740637 -113121990 + MIR SINE MIR 63 240 -22 2435 90 0 0 chr9 4740682 4740983 -113121644 - AluSx SINE Alu -11 301 1 2222 108 0 0 chr9 4742792 4743078 -113119549 + AluSx SINE Alu 1 286 -26 311 333 83 6 chr9 4743746 4743926 -113118701 - MIR SINE MIR -7 255 62 1826 162 13 7 chr9 4744658 4744961 -113117666 - AluJb SINE Alu -7 305 1 1643 204 3 0 chr9 4745157 4745451 -113117176 + AluJb SINE Alu 6 300 -12 207 69 0 0 chr9 4746773 4746802 -113115825 + (TA)n Simple_repeat Simple_repeat 2 30 0 270 0 0 0 chr9 4749103 4749133 -113113494 + (TG)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chr9 4749132 4749162 -113113465 + (GA)n Simple_repeat Simple_repeat 1 30 0 591 288 35 5 chr9 4749222 4749420 -113113207 - MIR SINE MIR -12 250 47 562 302 74 23 chr9 4751815 4752030 -113110597 + MIR SINE MIR 22 247 -15 575 66 0 0 chr9 4752041 4752117 -113110510 + L1PA8 LINE L1 6095 6170 -2 277 300 0 0 chr9 4752138 4752218 -113110409 + (CTG)n Simple_repeat Simple_repeat 1 80 0 258 215 0 0 chr9 4752219 4752298 -113110329 + (CTA)n Simple_repeat Simple_repeat 2 80 0 459 0 0 0 chr9 4752363 4752414 -113110213 + (CA)n Simple_repeat Simple_repeat 2 52 0 2017 148 0 0 chr9 4752420 4752717 -113109910 - AluJb SINE Alu -15 297 1 1806 174 0 32 chr9 4752761 4753077 -113109550 - AluJb SINE Alu -6 306 1 436 171 98 0 chr9 4754179 4754261 -113108366 + MER3 DNA MER1_type 2 91 -118 230 143 57 0 chr9 4754246 4754281 -113108346 - Charlie5 DNA MER1_type -2573 39 3 * 417 301 56 4 chr9 4754353 4754602 -113108025 + L2 LINE L2 1939 2200 -1114 * 567 255 87 10 chr9 4754600 4754796 -113107831 - MIR SINE MIR -9 253 43 338 304 181 24 chr9 4754860 4755241 -113107386 + L2 LINE L2 2273 2713 -601 2312 99 3 0 chr9 4755242 4755536 -113107091 + AluSx SINE Alu 2 296 -16 225 338 39 26 chr9 4755723 4755877 -113106750 + L2 LINE L2 2939 3094 -178 187 296 43 62 chr9 4757290 4757452 -113105175 + L2 LINE L2 2933 3091 -181 264 256 51 34 chr9 4759594 4759711 -113102916 - MIR SINE MIR -50 212 94 1909 166 0 7 chr9 4760167 4760469 -113102158 + AluJb SINE Alu 1 300 -12 2189 108 0 3 chr9 4761308 4761622 -113101005 - AluSx SINE Alu 0 313 1 2852 66 56 13 chr9 4761641 4762037 -113100590 - L1PA12 LINE L1 -15 6153 5741 1035 126 16 60 chr9 4762078 4762260 -113100367 - FRAM SINE Alu -8 168 1 2348 95 3 0 chr9 4762345 4762639 -113099988 + AluSx SINE Alu 1 295 -17 345 258 31 21 chr9 4763099 4763196 -113099431 + L2 LINE L2 3166 3263 -9 1002 254 29 41 chr9 4763491 4763833 -113098794 + MER46C DNA MER2_type 1 338 0 3364 176 15 45 chr9 4763946 4764303 -113098324 + MER82 DNA MER2_type 3 369 -284 1623 157 95 4 chr9 4764303 4764577 -113098050 - AluJo SINE Alu -13 299 1 1849 168 7 0 chr9 4764583 4764874 -113097753 - AluJo SINE Alu -15 297 5 3364 176 15 45 chr9 4764874 4765180 -113097447 + MER82 DNA MER2_type 374 653 0 22 35 0 0 chr9 4765704 4765733 -113096894 + AT_rich Low_complexity Low_complexity 1 29 0 866 132 0 22 chr9 4766309 4766445 -113096182 - FLAM_C SINE Alu -5 138 6 1941 132 170 16 chr9 4767304 4767675 -113094952 + MSTA LTR MaLR 1 428 0 508 256 34 0 chr9 4768391 4768508 -113094119 - MER45A DNA AcHobo 0 178 58 231 146 0 0 chr9 4768888 4768929 -113093698 + (TG)n Simple_repeat Simple_repeat 2 42 0 299 354 35 0 chr9 4769071 4769184 -113093443 - L3 LINE CR1 -224 1353 1237 * 435 287 172 4 chr9 4769155 4769399 -113093228 + L3 LINE CR1 1248 1532 -45 1812 33 0 0 chr9 4769884 4770096 -113092531 - L1PA2 LINE L1 0 6155 5944 2517 21 3 0 chr9 4770096 4770384 -113092243 + L1PA2 LINE L1 5652 5940 -215 2443 91 0 10 chr9 4770642 4770950 -113091677 + AluSx SINE Alu 1 305 -7 745 125 8 33 chr9 4770958 4771078 -113091549 + FLAM_C SINE Alu 1 117 -16 23 33 0 0 chr9 4771078 4771108 -113091519 + AT_rich Low_complexity Low_complexity 1 30 0 1400 148 14 9 chr9 4771190 4771406 -113091221 - AluSx SINE Alu -95 217 1 2123 124 3 0 chr9 4771997 4772301 -113090326 - AluSx SINE Alu 0 305 1 21 71 0 0 chr9 4772394 4772436 -113090191 + AT_rich Low_complexity Low_complexity 1 42 0 322 313 37 12 chr9 4772570 4772733 -113089894 - L1ME4a LINE L1 -219 5902 5736 246 254 0 0 chr9 4774921 4774980 -113087647 + (TAA)n Simple_repeat Simple_repeat 2 60 0 624 242 55 28 chr9 4775012 4775194 -113087433 - MIR SINE MIR -74 188 2 1035 184 9 55 chr9 4775225 4775377 -113087250 + MER3 DNA MER1_type 2 143 -66 909 119 0 15 chr9 4775377 4775511 -113087116 - FLAM_C SINE Alu -1 132 1 1035 184 9 55 chr9 4775511 4775575 -113087052 + MER3 DNA MER1_type 143 208 -1 369 189 131 143 chr9 4776119 4776294 -113086333 - MER106B DNA MER1_type -57 1002 7 636 206 58 5 chr9 4776608 4776695 -113085932 + MER5C DNA MER1_type 76 157 -167 1617 131 21 100 chr9 4776695 4777024 -113085603 + AluYb8 SINE Alu 1 303 -15 636 206 58 5 chr9 4777024 4777125 -113085502 + MER5C DNA MER1_type 157 274 -50 250 302 63 45 chr9 4777864 4778086 -113084541 + MIR SINE MIR 24 249 -13 564 278 125 33 chr9 4778167 4778732 -113083895 + L2 LINE L2 2646 3270 -2 389 221 14 83 chr9 4778824 4778969 -113083658 + MIR SINE MIR 57 191 -71 2323 102 7 3 chr9 4779350 4779653 -113082974 + AluSx SINE Alu 3 312 0 554 175 143 0 chr9 4780227 4780353 -113082274 - MIR SINE MIR -106 156 13 203 138 0 0 chr9 4780807 4780836 -113081791 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 10550 131 124 1 chr9 4782115 4783868 -113078759 - L1M1 LINE L1 -4317 3248 1280 1340 108 8 121 chr9 4783870 4784119 -113078508 + AluSg/x SINE Alu 82 302 -8 1292 131 5 15 chr9 4784225 4784423 -113078204 + AluSg/x SINE Alu 110 305 -5 2302 105 0 0 chr9 4785380 4785674 -113076953 + AluSx SINE Alu 1 294 -18 515 97 84 0 chr9 4785675 4785829 -113076798 + (TA)n Simple_repeat Simple_repeat 1 167 0 205 182 0 0 chr9 4785883 4785916 -113076711 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 25 31 0 0 chr9 4786034 4786066 -113076561 + AT_rich Low_complexity Low_complexity 1 32 0 202 319 121 45 chr9 4787225 4787382 -113075245 - L2 LINE L2 -8 3264 3096 * 689 169 245 0 chr9 4787378 4787562 -113075065 + MIR SINE MIR 8 236 -26 387 155 0 14 chr9 4787583 4787654 -113074973 + MLT1C LTR MaLR 398 467 0 1551 185 10 20 chr9 4787820 4788112 -113074515 - AluJo SINE Alu -23 289 1 201 59 88 0 chr9 4788171 4788205 -113074422 + A-rich Low_complexity Low_complexity 2 38 0 816 181 0 0 chr9 4788205 4788338 -113074289 + FLAM_C SINE Alu 1 133 0 345 361 67 13 chr9 4788546 4788845 -113073782 + L2 LINE L2 2077 2391 -923 702 278 112 46 chr9 4789078 4789427 -113073200 + L2 LINE L2 2942 3313 0 47 0 0 0 chr9 4790048 4790095 -113072532 + AT_rich Low_complexity Low_complexity 1 47 0 324 293 138 22 chr9 4790341 4790566 -113072061 - MIR SINE MIR -6 256 6 537 219 62 23 chr9 4790974 4791102 -113071525 - FLAM_C SINE Alu -8 135 3 1986 131 17 10 chr9 4791911 4792208 -113070419 - AluJb SINE Alu -13 299 1 1046 151 12 0 chr9 4792220 4792386 -113070241 - AluSg/x SINE Alu -5 307 140 204 200 0 0 chr9 4794165 4794210 -113068417 + (CCG)n Simple_repeat Simple_repeat 2 46 0 2146 109 13 3 chr9 4795583 4795886 -113066741 + AluY SINE Alu 3 308 -3 2035 124 7 3 chr9 4795932 4796223 -113066404 + AluSx SINE Alu 3 294 -18 317 267 33 27 chr9 4796258 4796408 -113066219 + L1ME4a LINE L1 5719 5869 -252 708 174 16 0 chr9 4796494 4796615 -113066012 + FLAM_C SINE Alu 2 124 -19 1530 173 0 26 chr9 4796753 4797019 -113065608 + AluJo SINE Alu 38 296 -16 735 316 0 0 chr9 4797170 4797379 -113065248 + MIR SINE MIR 28 236 -26 957 64 0 0 chr9 4797516 4797626 -113065001 + AluSq SINE Alu 109 218 -95 1616 165 0 29 chr9 4797710 4797983 -113064644 + AluJo SINE Alu 1 265 -47 2858 123 186 6 chr9 4798016 4798543 -113064084 - LTR29 LTR ERV1 0 622 1 21 89 0 0 chr9 4798606 4798662 -113063965 + AT_rich Low_complexity Low_complexity 1 56 0 2168 99 3 20 chr9 4798686 4798988 -113063639 + AluSq SINE Alu 1 297 -16 1242 198 84 62 chr9 4799024 4799393 -113063234 - LTR8A LTR ERV1 0 727 351 2140 117 0 0 chr9 4799393 4799676 -113062951 + AluSq SINE Alu 1 283 -30 1136 145 40 122 chr9 4799695 4799991 -113062636 - LTR8A LTR ERV1 -337 390 119 2238 117 7 0 chr9 4799993 4800301 -113062326 + AluSx SINE Alu 3 312 0 1316 117 0 0 chr9 4800301 4800480 -113062147 + AluSg/x SINE Alu 132 310 -2 683 177 53 0 chr9 4800480 4800593 -113062034 - LTR8 LTR ERV1 -572 119 1 287 316 41 0 chr9 4800690 4800788 -113061839 - MIR SINE MIR -21 241 140 447 301 15 0 chr9 4800823 4800959 -113061668 - MIR SINE MIR -110 152 15 2295 105 0 10 chr9 4800966 4801270 -113061357 - AluSg SINE Alu -9 301 1 266 257 0 0 chr9 4802542 4802612 -113060015 + MIR SINE MIR 66 135 -127 464 284 123 89 chr9 4802654 4803105 -113059522 + L1ME4a LINE L1 5372 5828 -293 252 0 0 0 chr9 4803164 4803192 -113059435 + (CA)n Simple_repeat Simple_repeat 2 29 0 234 0 0 0 chr9 4803200 4803226 -113059401 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2037 113 18 0 chr9 4803230 4803505 -113059122 - AluSx SINE Alu -32 280 1 739 155 9 0 chr9 4803692 4803808 -113058819 + AluSg/x SINE Alu 185 301 -9 924 125 0 22 chr9 4804384 4804520 -113058107 + AluSq/x SINE Alu 7 139 -173 671 231 21 0 chr9 4804757 4804900 -113057727 + MER58B DNA MER1_type 181 326 -15 1520 199 11 11 chr9 4805019 4805300 -113057327 + AluJo SINE Alu 1 281 -31 380 250 75 19 chr9 4806918 4807078 -113055549 - L1MC5 LINE L1 -184 7777 7609 641 281 59 64 chr9 4807731 4808187 -113054440 - L1ME4a LINE L1 -178 5943 5490 346 114 0 0 chr9 4808517 4808561 -113054066 + MER72 LTR ERV1 585 628 -94 811 172 0 0 chr9 4808913 4809035 -113053592 + FLAM_C SINE Alu 1 122 -11 734 274 10 82 chr9 4809089 4809381 -113053246 - MER102a DNA MER1_type -18 312 42 1440 156 0 0 chr9 4809942 4810153 -113052474 + AluSg/x SINE Alu 82 292 -20 1025 266 135 17 chr9 4810253 4810719 -113051908 + LTR33 LTR ERVL 1 521 0 482 308 49 90 chr9 4810756 4811146 -113051481 + L2 LINE L2 2872 3245 -27 2149 112 0 13 chr9 4812742 4813045 -113049582 - AluY SINE Alu -12 299 1 1968 119 0 63 chr9 4813738 4813889 -113048738 + AluSx SINE Alu 1 123 -193 1983 113 7 7 chr9 4813889 4814171 -113048456 + AluSx SINE Alu 21 302 -10 1968 119 0 63 chr9 4814171 4814354 -113048273 + AluSx SINE Alu 123 316 0 2359 104 0 7 chr9 4814646 4814953 -113047674 + AluSx SINE Alu 1 305 -7 542 259 56 0 chr9 4816694 4816837 -113045790 + MER117 DNA MER1_type 12 162 -35 341 259 229 15 chr9 4817290 4817495 -113045132 + MIR SINE MIR 12 260 -2 2055 158 0 0 chr9 4817580 4817890 -113044737 - AluJb SINE Alu -2 310 1 442 136 0 23 chr9 4818277 4818365 -113044262 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2704 45 0 0 chr9 4818660 4818971 -113043656 + AluYa5 SINE Alu 1 311 0 1823 145 9 60 chr9 4819556 4819874 -113042753 + AluSx SINE Alu 1 302 -10 2167 109 33 0 chr9 4819913 4820215 -113042412 + AluSx SINE Alu 1 312 0 424 181 106 0 chr9 4820307 4820401 -113042226 + MER20 DNA MER1_type 24 127 -92 68 55 0 0 chr9 4821624 4821734 -113040893 + AT_rich Low_complexity Low_complexity 1 110 0 1609 198 63 25 chr9 4822159 4822554 -113040073 + L1MC4 LINE L1 7357 7766 -276 1826 156 14 3 chr9 4823063 4823358 -113039269 - AluJb SINE Alu -14 298 1 21 0 0 0 chr9 4824477 4824498 -113038129 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr9 4825037 4825062 -113037565 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 200 275 0 0 chr9 4825068 4825108 -113037519 + polypyrimidine Low_complexity Low_complexity 4 43 0 3506 112 112 0 chr9 4825499 4826070 -113036557 + LTR24C LTR ERV1 1 635 0 1632 167 113 130 chr9 4826591 4827238 -113035389 - LTR1B LTR ERV1 -81 745 110 570 318 0 6 chr9 4827626 4827805 -113034822 + (CA)n Simple_repeat Simple_repeat 2 179 0 458 316 0 6 chr9 4827838 4828198 -113034429 + (CA)n Simple_repeat Simple_repeat 1 357 0 417 363 0 6 chr9 4828280 4828459 -113034168 + (CA)n Simple_repeat Simple_repeat 2 179 0 8533 48 1 2 chr9 4828843 4830539 -113032088 + L1PA3 LINE L1 4315 6007 -148 2115 115 0 3 chr9 4830836 4831124 -113031503 + AluSq SINE Alu 1 308 0 190 0 0 0 chr9 4831124 4831145 -113031482 + (TAA)n Simple_repeat Simple_repeat 2 180 0 404 250 24 40 chr9 4831261 4831385 -113031242 + L2 LINE L2 3151 3272 0 301 291 13 0 chr9 4831415 4831494 -113031133 - MIR3 SINE MIR -20 188 109 229 288 41 27 chr9 4831564 4831637 -113030990 - L2 LINE L2 -1 3312 3239 806 303 73 23 chr9 4831831 4832456 -113030171 - L2 LINE L2 -60 3253 2590 705 250 66 0 chr9 4832884 4833096 -113029531 - MER20B DNA MER1_type 0 783 558 1084 214 140 84 chr9 4833112 4833505 -113029122 - MER20B DNA MER1_type -366 417 3 216 336 136 18 chr9 4833559 4833669 -113028958 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4835440 4835461 -113027166 + AT_rich Low_complexity Low_complexity 1 21 0 2336 94 0 3 chr9 4836738 4837037 -113025590 - AluSx SINE Alu -14 298 1 1292 125 100 0 chr9 4837116 4837316 -113025311 + AluSg/x SINE Alu 86 305 -7 608 332 16 24 chr9 4837317 4837570 -113025057 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4838031 4838054 -113024573 + AT_rich Low_complexity Low_complexity 1 23 0 820 231 95 18 chr9 4838367 4838588 -113024039 + MIR SINE MIR 9 246 -16 180 349 35 35 chr9 4838939 4839025 -113023602 + MIR SINE MIR 45 130 -78 1772 240 41 7 chr9 4839055 4839468 -113023159 - L1ME1 LINE L1 -25 6141 5715 286 155 42 70 chr9 4839470 4839541 -113023086 + MIR SINE MIR 120 188 -74 402 115 0 0 chr9 4839552 4839613 -113023014 + (TA)n Simple_repeat Simple_repeat 2 62 0 606 258 145 14 chr9 4839831 4840052 -113022575 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4840611 4840635 -113021992 + AT_rich Low_complexity Low_complexity 1 24 0 1729 127 0 4 chr9 4840649 4840908 -113021719 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4840913 4840950 -113021677 + AT_rich Low_complexity Low_complexity 1 37 0 4123 100 32 12 chr9 4840954 4841555 -113021072 - L1MA3 LINE L1 -1 6304 5692 496 156 13 0 chr9 4842200 4842277 -113020350 - AluJ/FLAM SINE Alu -228 84 7 621 235 136 60 chr9 4842286 4842639 -113019988 - L1ME4a LINE L1 0 6121 5742 1282 223 143 61 chr9 4842644 4843367 -113019260 - LTR50 LTR ERVL 0 795 14 257 150 0 0 chr9 4843439 4843479 -113019148 - L1ME4a LINE L1 -459 5662 5623 2397 85 0 0 chr9 4844614 4844909 -113017718 - AluSx SINE Alu -9 303 9 425 222 163 0 chr9 4844945 4845080 -113017547 + L1ME4a LINE L1 5964 6120 -1 1656 196 3 7 chr9 4845508 4845809 -113016818 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 4845809 4845831 -113016796 + AT_rich Low_complexity Low_complexity 1 22 0 884 231 100 9 chr9 4846109 4846338 -113016289 - MIR SINE MIR -12 250 1 1581 209 3 0 chr9 4846437 4846724 -113015903 - AluJo SINE Alu -20 292 5 2239 117 3 0 chr9 4846939 4847237 -113015390 + AluSg SINE Alu 1 299 -11 838 182 69 19 chr9 4847543 4847702 -113014925 - AluJo SINE Alu -24 288 122 1460 194 3 26 chr9 4847841 4848145 -113014482 - AluJo SINE Alu -15 297 1 2103 99 18 7 chr9 4848152 4848434 -113014193 - AluSx SINE Alu -27 285 1 762 179 0 30 chr9 4848716 4848850 -113013777 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 4850059 4850081 -113012546 + AT_rich Low_complexity Low_complexity 1 22 0 339 293 75 45 chr9 4850495 4850628 -113011999 - L2 LINE L2 0 3272 3136 367 231 95 27 chr9 4850629 4850776 -113011851 + L1ME4a LINE L1 5713 5869 -252 514 269 99 13 chr9 4850848 4851034 -113011593 + L1ME4a LINE L1 5443 5657 -505 679 213 28 0 chr9 4851037 4851178 -113011449 + Charlie1 DNA MER1_type 5 149 -2612 * 1365 141 71 24 chr9 4851173 4851470 -113011157 + Charlie1 DNA MER1_type 2420 2730 -31 1137 154 135 5 chr9 4851576 4851784 -113010843 + MER46A DNA MER2_type 2 236 0 292 258 54 21 chr9 4852207 4852300 -113010327 + L1ME4a LINE L1 5956 6051 -70 33 25 0 0 chr9 4852323 4852363 -113010264 + AT_rich Low_complexity Low_complexity 1 40 0 1899 159 28 0 chr9 4852512 4852801 -113009826 - AluJo SINE Alu -15 297 1 622 244 73 6 chr9 4853019 4853183 -113009444 - MIR SINE MIR -3 259 85 410 206 20 0 chr9 4853469 4853571 -113009056 + CT-rich Low_complexity Low_complexity 1 104 0 2118 144 0 3 chr9 4853593 4853905 -113008722 - AluJo SINE Alu -1 311 1 1648 179 16 52 chr9 4854356 4854645 -113007982 - MER4D LTR ERV1 0 903 628 1890 174 26 0 chr9 4854645 4854949 -113007678 + AluJo SINE Alu 1 312 0 1648 179 16 52 chr9 4854949 4855022 -113007605 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 4855042 4855328 -113007299 - MER49 LTR ERV1 -629 294 1 421 324 7 7 chr9 4855414 4855556 -113007071 + MIR SINE MIR 61 202 -60 1942 181 86 49 chr9 4855556 4856042 -113006585 - LTR54 LTR ERV1 0 510 7 263 333 79 8 chr9 4856316 4856442 -113006185 + MIR SINE MIR 48 182 -80 1305 189 58 0 chr9 4856943 4857225 -113005402 - AluJo SINE Alu 0 306 10 1179 233 78 33 chr9 4857226 4857666 -113004961 + LTR56 LTR ERV1 8 610 0 227 77 0 26 chr9 4857684 4857723 -113004904 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2298 69 24 3 chr9 4857745 4858035 -113004592 + AluSq SINE Alu 1 296 -17 1774 104 150 0 chr9 4858416 4858676 -113003951 - AluSx SINE Alu -2 300 2 182 196 62 93 chr9 4858702 4858799 -113003828 - MIR SINE MIR -70 192 99 1520 95 60 0 chr9 4859245 4859477 -113003150 - L1MA8 LINE L1 -4 6287 6042 1100 124 12 6 chr9 4859524 4859693 -113002934 - AluSg/x SINE Alu -16 296 127 192 324 0 15 chr9 4859795 4859863 -113002764 + L2 LINE L2 2673 2739 -575 2325 102 0 6 chr9 4859920 4860234 -113002393 - AluSx SINE Alu 0 312 1 343 351 38 15 chr9 4860564 4860695 -113001932 + MER5A DNA MER1_type 8 141 -48 185 246 222 56 chr9 4860597 4860704 -113001923 - MER5B DNA MER1_type -29 149 17 * 1567 176 0 25 chr9 4860704 4860983 -113001644 + AluJb SINE Alu 1 272 -40 185 246 222 56 chr9 4860983 4861001 -113001626 - MER5B DNA MER1_type -161 17 3 2052 108 0 0 chr9 4861137 4861416 -113001211 + AluY SINE Alu 1 279 -32 321 130 0 87 chr9 4862760 4862829 -112999798 + L1MC4 LINE L1 6471 6533 -1509 1220 172 102 19 chr9 4862829 4863085 -112999542 + AluJo SINE Alu 17 293 -19 507 261 41 60 chr9 4863086 4863304 -112999323 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4863316 4863340 -112999287 + AT_rich Low_complexity Low_complexity 1 24 0 1745 114 0 0 chr9 4863352 4863579 -112999048 + AluSg SINE Alu 1 227 -83 1292 198 68 0 chr9 4864691 4864928 -112997699 - AluJb SINE Alu -59 253 1 2223 150 0 0 chr9 4864928 4865289 -112997338 - L1 LINE L1 -1142 5004 4644 6234 95 16 15 chr9 4865294 4866160 -112996467 - L1MA2 LINE L1 0 6304 5438 16185 147 30 86 chr9 4866160 4866657 -112995970 - L1 LINE L1 -902 6663 6140 1311 140 0 0 chr9 4866657 4866843 -112995784 - AluSg/x SINE Alu -2 310 125 16185 147 30 86 chr9 4866843 4867451 -112995176 - L1 LINE L1 -1425 6140 5500 1639 151 45 34 chr9 4867451 4867742 -112994885 - AluJb SINE Alu -8 304 11 16185 147 30 86 chr9 4867742 4867898 -112994729 - L1 LINE L1 -2065 5500 5337 1696 158 92 0 chr9 4867898 4868170 -112994457 + AluSx SINE Alu 1 297 -15 16185 147 30 86 chr9 4868170 4869772 -112992855 - L1 LINE L1 -2228 5337 3648 2777 90 0 37 chr9 4869772 4869844 -112992783 - THE1B LTR MaLR 0 364 291 2218 119 0 0 chr9 4869844 4870147 -112992480 + AluSg SINE Alu 1 303 -7 2777 90 0 37 chr9 4870147 4870452 -112992175 - THE1B LTR MaLR -73 291 1 16185 147 30 86 chr9 4870452 4870834 -112991793 - L1 LINE L1 -3917 3648 3246 2927 73 0 8 chr9 4870834 4871203 -112991424 - L1PA8 LINE L1 0 6172 5807 16185 147 30 86 chr9 4871203 4872498 -112990129 - L1 LINE L1 -4319 3246 1881 2262 114 0 3 chr9 4872498 4872805 -112989822 + AluSx SINE Alu 1 306 -6 16185 147 30 86 chr9 4872805 4873183 -112989444 - L1 LINE L1 -5684 1881 1484 2326 101 14 0 chr9 4873183 4873479 -112989148 + AluSx SINE Alu 1 300 -12 16185 147 30 86 chr9 4873479 4874331 -112988296 - L1 LINE L1 -6081 1484 1081 315 203 0 0 chr9 4875098 4875167 -112987460 + A-rich Low_complexity Low_complexity 1 69 0 5690 178 47 6 chr9 4875183 4876213 -112986414 - L1 LINE L1 -6489 1076 5 1815 131 3 91 chr9 4876230 4876559 -112986068 + AluSx SINE Alu 1 300 -12 2562 184 89 7 chr9 4876559 4877134 -112985493 + L1MB7 LINE L1 5487 6108 -76 1899 162 0 20 chr9 4877246 4877549 -112985078 - AluSq SINE Alu -16 297 1 1322 143 0 46 chr9 4877904 4878121 -112984506 - AluJb SINE Alu -105 207 1 370 109 0 0 chr9 4878127 4878182 -112984445 - MLT2B1 LTR ERVL -465 55 1 313 347 0 0 chr9 4878186 4878284 -112984343 - L1MC/D LINE L1 -2246 5562 5465 2203 118 0 13 chr9 4878380 4878694 -112983933 - AluSg SINE Alu 0 310 1 24 0 0 0 chr9 4878706 4878730 -112983897 + AT_rich Low_complexity Low_complexity 1 24 0 507 261 41 60 chr9 4878742 4878960 -112983667 - L1MC4 LINE L1 -1295 6747 6534 1203 176 102 19 chr9 4878961 4879217 -112983410 - AluJo SINE Alu -19 293 17 321 130 0 87 chr9 4879217 4879286 -112983341 - L1MC4 LINE L1 -1509 6533 6471 2052 108 0 0 chr9 4880630 4880909 -112981718 - AluY SINE Alu -32 279 1 185 246 222 56 chr9 4881045 4881063 -112981564 + MER5B DNA MER1_type 3 17 -161 1539 179 0 25 chr9 4881063 4881342 -112981285 - AluJb SINE Alu -40 272 1 185 246 222 56 chr9 4881342 4881449 -112981178 + MER5B DNA MER1_type 17 149 -29 * 363 344 38 15 chr9 4881351 4881482 -112981145 - MER5A DNA MER1_type -48 141 8 2327 103 0 6 chr9 4881812 4882124 -112980503 + AluSx SINE Alu 1 310 -2 192 324 0 15 chr9 4882181 4882249 -112980378 - L2 LINE L2 -575 2739 2673 1130 120 13 0 chr9 4882362 4882520 -112980107 + AluSg/x SINE Alu 137 296 -16 1459 95 60 0 chr9 4882567 4882799 -112979828 + L1MA8 LINE L1 6042 6287 -4 1674 107 149 0 chr9 4883368 4883630 -112978997 + AluSx SINE Alu 2 302 0 2078 128 21 0 chr9 4884008 4884298 -112978329 - AluSq SINE Alu -16 297 2 2003 131 3 20 chr9 4884718 4885023 -112977604 - AluJo SINE Alu -12 300 1 1994 112 20 7 chr9 4885346 4885641 -112976986 - AluSx SINE Alu -13 299 1 756 239 68 27 chr9 4885690 4885953 -112976674 - MLT2D LTR ERVL -140 274 1 201 179 26 0 chr9 4886072 4886111 -112976516 + CT-rich Low_complexity Low_complexity 2 41 0 339 248 19 38 chr9 4887095 4887200 -112975427 - MLT1K LTR MaLR -27 561 459 1840 173 127 0 chr9 4887544 4887867 -112974760 - MER47A DNA MER2_type 0 366 3 502 223 234 5 chr9 4888221 4888418 -112974209 + MIR SINE MIR 21 262 0 1615 177 23 23 chr9 4888480 4888779 -112973848 - AluJo SINE Alu -13 299 1 438 296 46 15 chr9 4888880 4889076 -112973551 + MIR SINE MIR 61 262 0 849 232 170 26 chr9 4889230 4889632 -112972995 - MLT1K LTR MaLR -37 551 20 1757 173 7 19 chr9 4889731 4890038 -112972589 + AluJb SINE Alu 1 303 -9 2269 110 7 0 chr9 4890186 4890494 -112972133 - AluSx SINE Alu -2 310 1 372 294 0 0 chr9 4891191 4891609 -112971018 + (TG)n Simple_repeat Simple_repeat 1 418 0 455 295 1 0 chr9 4891641 4892557 -112970070 + (TG)n Simple_repeat Simple_repeat 1 917 0 509 311 0 7 chr9 4892576 4892724 -112969903 + (TG)n Simple_repeat Simple_repeat 1 147 0 25 51 0 0 chr9 4893077 4893116 -112969511 + AT_rich Low_complexity Low_complexity 1 39 0 1925 119 0 80 chr9 4893192 4893529 -112969098 - AluJb SINE Alu -2 310 1 2342 107 0 0 chr9 4893645 4893953 -112968674 - AluSq SINE Alu -5 308 1 21 0 0 0 chr9 4894106 4894127 -112968500 + AT_rich Low_complexity Low_complexity 1 21 0 2113 111 30 3 chr9 4894333 4894631 -112967996 + AluSc SINE Alu 1 306 -3 23 0 0 0 chr9 4894673 4894696 -112967931 + AT_rich Low_complexity Low_complexity 1 23 0 978 163 0 18 chr9 4894889 4895055 -112967572 - MER1B DNA MER1_type -55 284 122 252 163 23 0 chr9 4895055 4895098 -112967529 + MER1B DNA MER1_type 286 329 0 497 116 16 132 chr9 4895231 4895273 -112967354 + L1PB4 LINE L1 6043 6088 -68 2349 49 0 0 chr9 4895273 4895560 -112967067 + AluSc SINE Alu 15 301 0 497 116 16 132 chr9 4895560 4895645 -112966982 + L1PB4 LINE L1 6088 6156 0 317 330 84 6 chr9 4896594 4896773 -112965854 + MER112 DNA MER1_type 50 242 -18 659 244 8 0 chr9 4896874 4897005 -112965622 + FLAM_C SINE Alu 1 132 -1 291 330 9 9 chr9 4897005 4897111 -112965516 + MIR SINE MIR 22 127 -135 992 213 29 24 chr9 4897168 4897375 -112965252 - MSTD LTR MaLR -2 394 187 615 237 0 8 chr9 4897377 4897508 -112965119 - FLAM_A SINE Alu -9 133 4 822 246 26 26 chr9 4897510 4897705 -112964922 - MSTD LTR MaLR -201 195 1 228 283 0 0 chr9 4898203 4898249 -112964378 + polypyrimidine Low_complexity Low_complexity 4 49 0 1776 152 24 20 chr9 4898270 4898566 -112964061 + AluJo SINE Alu 3 299 -13 30 0 0 0 chr9 4898567 4898597 -112964030 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr9 4899014 4899036 -112963591 + (T)n Simple_repeat Simple_repeat 1 22 0 471 261 11 50 chr9 4900121 4900301 -112962326 - L1MC4a LINE L1 -1926 5882 5710 1324 183 117 11 chr9 4900642 4900915 -112961712 - AluSx SINE Alu -10 302 1 381 175 0 0 chr9 4901489 4901546 -112961081 + AluJ/FLAM SINE Alu 2 58 -244 628 135 162 18 chr9 4901564 4901675 -112960952 + FLAM_C SINE Alu 2 128 -5 1270 167 58 109 chr9 4901680 4901991 -112960636 + AluJb SINE Alu 1 295 -17 357 82 0 0 chr9 4903464 4903513 -112959114 + (TG)n Simple_repeat Simple_repeat 1 49 0 2366 46 70 0 chr9 4903637 4903922 -112958705 + AluY SINE Alu 1 305 -6 21 0 0 0 chr9 4904488 4904509 -112958118 + AT_rich Low_complexity Low_complexity 1 21 0 194 125 0 25 chr9 4905429 4905469 -112957158 + (TGG)n Simple_repeat Simple_repeat 3 41 0 524 289 13 0 chr9 4905554 4905706 -112956921 + MER102a DNA MER1_type 177 330 0 397 242 47 8 chr9 4906713 4906841 -112955786 - MIR3 SINE MIR -14 194 62 1257 159 34 0 chr9 4907210 4907418 -112955209 - AluJo SINE Alu -12 300 86 316 294 59 64 chr9 4907564 4907751 -112954876 - MIR3 SINE MIR -11 197 12 2482 76 7 0 chr9 4908262 4908564 -112954063 + AluSc SINE Alu 1 304 -5 217 345 115 0 chr9 4908603 4908742 -112953885 - MIR SINE MIR -47 215 61 272 319 0 0 chr9 4909147 4909241 -112953386 - MIR SINE MIR 0 262 169 25 0 0 0 chr9 4910205 4910230 -112952397 + AT_rich Low_complexity Low_complexity 1 25 0 504 284 95 9 chr9 4910487 4910698 -112951929 - MIR SINE MIR -16 246 18 182 288 0 15 chr9 4911402 4911468 -112951159 + MIR SINE MIR 15 79 -183 253 242 129 40 chr9 4912977 4913101 -112949526 - L1MC/D LINE L1 -1985 5823 5689 241 307 0 13 chr9 4914555 4914630 -112947997 + Charlie4 DNA MER1_type 1888 1961 0 612 294 63 25 chr9 4914668 4914906 -112947721 - MIR SINE MIR -3 259 13 22 35 0 0 chr9 4916835 4916864 -112945763 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr9 4917619 4917654 -112944973 + AT_rich Low_complexity Low_complexity 1 35 0 301 270 60 60 chr9 4917788 4918003 -112944624 - L1MC4 LINE L1 -19 8023 7809 240 319 118 0 chr9 4918359 4918478 -112944149 + MIR SINE MIR 124 256 -6 443 274 127 6 chr9 4920737 4920894 -112941733 - MER102b DNA MER1_type -45 296 121 2077 111 31 0 chr9 4922670 4922959 -112939668 - AluSx SINE Alu -13 299 2 231 36 0 0 chr9 4926264 4926292 -112936335 + (T)n Simple_repeat Simple_repeat 1 28 0 2380 75 0 3 chr9 4927667 4927962 -112934665 - AluY SINE Alu -17 294 1 206 333 81 9 chr9 4928268 4928379 -112934248 + MIR SINE MIR 21 139 -123 321 157 0 0 chr9 4928566 4928617 -112934010 - MER66B LTR ERV1 -141 345 295 25 75 0 0 chr9 4928726 4928779 -112933848 + AT_rich Low_complexity Low_complexity 1 53 0 671 258 56 56 chr9 4928872 4929105 -112933522 - MIR SINE MIR -22 240 8 2504 57 7 0 chr9 4929106 4929402 -112933225 - AluY SINE Alu -13 298 1 2497 75 7 0 chr9 4930556 4930863 -112931764 + AluSg SINE Alu 1 309 -1 4362 164 23 26 chr9 4932858 4933703 -112928924 - L1MB8 LINE L1 -1 6177 5336 418 137 27 0 chr9 4933713 4933786 -112928841 - AluJo SINE Alu -11 301 227 * 804 205 47 23 chr9 4933783 4933954 -112928673 - AluJo SINE Alu -134 178 4 2229 187 52 23 chr9 4933960 4934484 -112928143 - L1MB8 LINE L1 -820 5326 4788 325 138 35 0 chr9 4934484 4934542 -112928085 + MER5B DNA MER1_type 116 175 -3 442 269 32 106 chr9 4935040 4935322 -112927305 + L2 LINE L2 3046 3306 -7 675 164 9 0 chr9 4935483 4935593 -112927034 + FLAM_A SINE Alu 19 129 -13 28 61 0 0 chr9 4935848 4935897 -112926730 + AT_rich Low_complexity Low_complexity 1 49 0 1203 246 163 12 chr9 4936872 4937271 -112925356 - LTR40c LTR ERVL -1 464 6 1763 201 105 62 chr9 4937554 4938140 -112924487 - MLT1E2 LTR MaLR 0 624 1 962 164 53 0 chr9 4939091 4939243 -112923384 - FRAM SINE Alu -21 155 1 1102 113 6 0 chr9 4939300 4939459 -112923168 - L1PA10 LINE L1 -1 6167 6008 549 201 86 65 chr9 4941373 4941512 -112921115 - FLAM_C SINE Alu -1 142 1 252 272 160 0 chr9 4941910 4942035 -112920592 + MIR SINE MIR 3 147 -115 235 259 151 0 chr9 4942619 4942758 -112919869 + MIR SINE MIR 89 256 -6 385 250 136 15 chr9 4942874 4943006 -112919621 - MLT1K LTR MaLR -20 568 421 277 100 0 0 chr9 4943006 4943046 -112919581 + FRAM/FAM SINE Alu 43 82 -93 188 229 29 57 chr9 4943176 4943246 -112919381 + MIR SINE MIR 78 145 -63 22 35 0 0 chr9 4943304 4943333 -112919294 + AT_rich Low_complexity Low_complexity 1 29 0 603 316 30 6 chr9 4943377 4943545 -112919082 - MLT1K LTR MaLR -415 173 2 243 88 0 0 chr9 4943954 4943988 -112918639 + (T)n Simple_repeat Simple_repeat 1 34 0 2002 100 0 8 chr9 4944120 4944379 -112918248 - AluSq SINE Alu -48 265 9 2110 107 17 3 chr9 4944586 4944875 -112917752 - AluSg SINE Alu -17 293 1 221 245 0 0 chr9 4944893 4944942 -112917685 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 2089 127 10 7 chr9 4945009 4945300 -112917327 + AluSq SINE Alu 1 292 -21 299 253 137 11 chr9 4945644 4945739 -112916888 - MER103 DNA DNA -59 107 1 1864 152 13 23 chr9 4945875 4946184 -112916443 - AluJo SINE Alu -6 306 1 1820 176 0 0 chr9 4947387 4947682 -112914945 - AluJo SINE Alu -17 295 1 730 20 41 0 chr9 4947702 4947800 -112914827 + (CTATT)n Simple_repeat Simple_repeat 3 104 0 764 292 65 27 chr9 4948615 4949133 -112913494 - MLT1K LTR MaLR -8 580 13 217 248 186 18 chr9 4949305 4949418 -112913209 - MIR3 SINE MIR -49 159 28 1885 211 25 3 chr9 4949583 4949939 -112912688 + MLT1A1 LTR MaLR 1 364 -1 1034 210 0 40 chr9 4950363 4950587 -112912040 - AluJo SINE Alu -13 299 85 271 62 0 0 chr9 4950587 4950619 -112912008 - AluSg/x SINE Alu -52 250 219 979 112 0 42 chr9 4950619 4950762 -112911865 - AluJo SINE Alu -170 142 6 329 274 133 0 chr9 4951002 4951137 -112911490 + MARNA DNA Mariner 235 387 -199 2209 129 3 0 chr9 4951215 4951526 -112911101 + AluSx SINE Alu 1 312 0 246 132 0 0 chr9 4951541 4951594 -112911033 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 26 0 0 0 chr9 4953489 4953515 -112909112 + AT_rich Low_complexity Low_complexity 1 26 0 1728 199 3 0 chr9 4953596 4953883 -112908744 - AluJb SINE Alu -24 288 1 495 274 169 10 chr9 4954145 4954346 -112908281 + L1ME LINE L1 5582 5814 -307 196 289 111 11 chr9 4954490 4954580 -112908047 + L2 LINE L2 3141 3239 -33 2106 184 37 31 chr9 4956258 4956714 -112905913 - MLT1C LTR MaLR -6 461 3 234 250 0 0 chr9 4956911 4956959 -112905668 - MLT1K LTR MaLR -17 571 524 2261 109 0 22 chr9 4956977 4957297 -112905330 + AluSq SINE Alu 1 313 0 248 152 0 22 chr9 4957332 4957378 -112905249 - HSMAR1 DNA Mariner -1242 45 1 265 107 18 36 chr9 4957461 4957517 -112905110 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 859 257 61 39 chr9 4957544 4957824 -112904803 - MLT1K LTR MaLR -165 423 138 254 292 43 75 chr9 4958380 4958541 -112904086 - MIR3 SINE MIR -36 172 17 291 140 0 0 chr9 4958618 4958668 -112903959 + (CA)n Simple_repeat Simple_repeat 2 51 0 288 309 78 123 chr9 4958692 4959051 -112903576 + L2 LINE L2 2917 3259 -13 289 243 97 29 chr9 4959246 4959349 -112903278 - MIR SINE MIR -1 261 152 1753 160 21 63 chr9 4959859 4960240 -112902387 - MLT1A1 LTR MaLR 0 365 1 409 260 57 24 chr9 4960605 4960728 -112901899 - L2 LINE L2 -5 3308 3182 2256 105 0 0 chr9 4960750 4961044 -112901583 - AluSq SINE Alu -14 299 6 270 250 18 71 chr9 4961266 4961378 -112901249 - LTR67 LTR ERVL -367 190 32 1951 121 34 14 chr9 4961416 4961713 -112900914 + AluJb SINE Alu 1 303 -9 1175 213 63 72 chr9 4961776 4962124 -112900503 - L1ME2 LINE L1 -1 6163 5819 1175 127 0 0 chr9 4962124 4962289 -112900338 + AluSg/x SINE Alu 134 298 -14 478 207 78 17 chr9 4962289 4962405 -112900222 - L1ME2 LINE L1 -344 5822 5700 220 221 103 29 chr9 4962407 4962475 -112900152 - MER5A DNA MER1_type -116 73 1 5116 63 38 0 chr9 4962710 4963345 -112899282 + PABL_A LTR ERV1 1 659 -1 414 280 95 11 chr9 4963422 4963640 -112898987 - MLT1H LTR MaLR -215 334 62 272 279 52 10 chr9 4964362 4964528 -112898099 + LTR16C LTR ERVL 2 222 -269 2148 121 0 7 chr9 4965000 4965297 -112897330 + AluSx SINE Alu 1 295 -17 265 204 174 51 chr9 4966264 4966362 -112896265 - MIR SINE MIR -78 130 21 1377 170 88 28 chr9 4966542 4966825 -112895802 + AluJb SINE Alu 1 300 -12 490 243 18 0 chr9 4966854 4966965 -112895662 - MER103 DNA DNA -46 120 8 251 111 0 22 chr9 4966973 4967018 -112895609 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 748 211 34 96 chr9 4967430 4967838 -112894789 + L1ME LINE L1 552 934 -5136 842 206 0 0 chr9 4967843 4967989 -112894638 + FRAM SINE Alu 1 146 -30 257 0 30 0 chr9 4967994 4968027 -112894600 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1156 257 63 41 chr9 4968029 4968877 -112893750 + L1MB2 LINE L1 1016 5881 -224 * 1682 192 13 37 chr9 4968715 4969096 -112893531 + L1ME2 LINE L1 5717 6088 -10 308 265 65 37 chr9 4969129 4969344 -112893283 + L1MC4 LINE L1 7821 8041 -1 587 317 96 30 chr9 4969352 4970020 -112892607 + L2 LINE L2 2334 3046 -226 279 221 44 15 chr9 4970074 4970142 -112892485 + L2 LINE L2 3231 3300 -13 747 238 165 79 chr9 4970248 4970780 -112891847 - MLT1L LTR MaLR -8 580 4 22 0 0 0 chr9 4971012 4971034 -112891593 + AT_rich Low_complexity Low_complexity 1 22 0 295 264 0 11 chr9 4971077 4971164 -112891463 + L1MDb LINE L1 892 977 -5432 33150 100 12 59 chr9 4971866 4978320 -112884307 - L1PA7 LINE L1 -1 6153 12 27 87 0 0 chr9 4978330 4978399 -112884228 + AT_rich Low_complexity Low_complexity 1 69 0 2120 113 0 10 chr9 4978727 4979019 -112883608 - AluSx SINE Alu -6 306 18 269 323 91 5 chr9 4979141 4979327 -112883300 + L1M4 LINE L1 4935 5136 -1010 699 290 45 0 chr9 4979331 4979552 -112883075 - MIR SINE MIR 0 262 32 1992 158 0 0 chr9 4979838 4980136 -112882491 - AluJo SINE Alu -14 298 1 22 35 0 0 chr9 4981820 4981849 -112880778 + AT_rich Low_complexity Low_complexity 1 29 0 428 182 65 71 chr9 4981852 4982006 -112880621 - L1ME4a LINE L1 -4 6117 5965 1563 147 50 114 chr9 4982094 4982258 -112880369 + MLT1B LTR MaLR 1 174 -216 2170 130 0 0 chr9 4982258 4982559 -112880068 + AluSx SINE Alu 12 312 0 1563 147 50 114 chr9 4982559 4982796 -112879831 + MLT1B LTR MaLR 174 376 -14 999 289 46 28 chr9 4982902 4983364 -112879263 - L1ME4a LINE L1 -188 5933 5468 2255 78 10 10 chr9 4984244 4984537 -112878090 + AluSq SINE Alu 1 293 -20 291 123 70 26 chr9 4984537 4984651 -112877976 + (TA)n Simple_repeat Simple_repeat 1 119 0 1937 103 31 78 chr9 4984814 4985006 -112877621 - AluSx SINE Alu -8 304 131 2179 60 43 0 chr9 4985006 4985315 -112877312 - AluY SINE Alu 0 311 1 1937 103 31 78 chr9 4985315 4985441 -112877186 - AluSx SINE Alu -181 131 1 409 274 51 0 chr9 4985636 4985753 -112876874 - MIR SINE MIR -27 235 113 1868 121 10 38 chr9 4986737 4987052 -112875575 - AluSx SINE Alu 0 307 1 711 286 122 61 chr9 4987072 4987451 -112875176 - L1 LINE L1 -1792 4354 4000 2245 109 0 0 chr9 4987451 4987745 -112874882 + AluSx SINE Alu 1 294 -18 711 286 122 61 chr9 4987745 4988253 -112874374 - L1 LINE L1 -2146 4000 3408 430 311 34 48 chr9 4988393 4988739 -112873888 + MLT1K LTR MaLR 225 586 -2 2214 100 3 3 chr9 4989106 4989405 -112873222 - AluSx SINE Alu -13 299 1 332 296 32 38 chr9 4989463 4989649 -112872978 - L1 LINE L1 -3093 3053 2869 685 154 52 0 chr9 4989688 4989824 -112872803 - L1MC3 LINE L1 -1 7784 7642 1104 153 62 0 chr9 4989840 4990016 -112872611 - L1MC3 LINE L1 -427 7358 7172 1604 188 19 16 chr9 4990019 4990328 -112872299 - AluJo SINE Alu -2 310 1 354 231 9 37 chr9 4990328 4990436 -112872191 - MLT1F1 LTR MaLR -443 124 20 1389 194 70 39 chr9 4990436 4990792 -112871835 - L1MC3 LINE L1 -709 7076 6710 21 36 0 0 chr9 4990829 4990857 -112871770 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr9 4990876 4990908 -112871719 + AT_rich Low_complexity Low_complexity 1 32 0 44263 41 6 0 chr9 4990908 4997025 -112865602 - L1PA4 LINE L1 -3 6152 2 2103 117 7 7 chr9 4997027 4997325 -112865302 - AluSq SINE Alu -15 298 1 351 246 184 0 chr9 4997336 4997450 -112865177 - MLT1H LTR MaLR -65 484 350 2946 119 113 61 chr9 4997715 4998209 -112864418 - MLT2B1 LTR ERVL 0 520 1 255 313 10 20 chr9 4998993 4999092 -112863535 - MLT1-int LTR MaLR -1269 102 5 964 175 0 75 chr9 5000431 5000631 -112861996 + MER20 DNA MER1_type 1 185 -34 852 152 0 0 chr9 5000713 5000845 -112861782 + FRAM SINE Alu 33 164 -12 791 200 23 46 chr9 5000878 5001053 -112861574 - MER5B DNA MER1_type -1 177 7 297 178 208 20 chr9 5001059 5001160 -112861467 - MIR3 SINE MIR -48 160 41 26 82 0 0 chr9 5001262 5001323 -112861304 + AT_rich Low_complexity Low_complexity 1 61 0 3215 199 27 37 chr9 5001345 5002098 -112860529 + L1ME1 LINE L1 5408 6152 -14 231 295 147 0 chr9 5002105 5002234 -112860393 - HAL1b LINE L1 -6 1342 1195 1089 279 58 49 chr9 5002240 5002809 -112859818 - HAL1b LINE L1 -692 656 83 1358 188 19 16 chr9 5003691 5003947 -112858680 - MER58B DNA MER1_type -5 336 80 592 222 0 0 chr9 5003950 5004049 -112858578 + FLAM_A SINE Alu 1 99 -43 371 277 0 0 chr9 5004064 5004147 -112858480 - MER58B DNA MER1_type -258 83 1 1554 204 59 4 chr9 5004390 5004567 -112858060 - AluJo SINE Alu 0 308 108 189 0 0 0 chr9 5004567 5004588 -112858039 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1554 204 59 4 chr9 5004588 5004703 -112857924 - AluJo SINE Alu -200 108 1 271 258 152 3 chr9 5004875 5004967 -112857660 + MER2 DNA MER2_type 2 104 -135 1362 130 0 5 chr9 5005047 5005239 -112857388 + AluSx SINE Alu 7 197 -115 563 216 203 0 chr9 5006625 5006773 -112855854 + MER5A DNA MER1_type 9 186 -3 696 232 19 19 chr9 5006790 5006847 -112855780 - MER5B DNA MER1_type -5 173 117 2274 116 0 3 chr9 5006847 5007149 -112855478 + AluSg SINE Alu 1 301 -9 696 232 19 19 chr9 5007149 5007246 -112855381 - MER5B DNA MER1_type -60 118 19 2505 77 0 0 chr9 5007427 5007725 -112854902 - AluY SINE Alu -13 298 1 3606 184 11 17 chr9 5007741 5008403 -112854224 - L1MB4 LINE L1 -6 6174 5517 1674 192 0 3 chr9 5009396 5009693 -112852934 - AluJb SINE Alu -16 296 1 1642 169 17 40 chr9 5009698 5010000 -112852627 - AluJo SINE Alu -17 295 1 704 137 56 96 chr9 5010210 5010326 -112852301 - MER53 DNA DNA 0 189 83 2186 117 0 3 chr9 5010326 5010625 -112852002 + AluY SINE Alu 2 299 -12 704 137 56 96 chr9 5010625 5010705 -112851922 - MER53 DNA DNA -106 83 1 348 286 271 18 chr9 5010940 5011331 -112851296 - LTR33 LTR ERVL -27 494 5 482 284 45 13 chr9 5011333 5011488 -112851139 - MIR SINE MIR -19 243 84 23 0 0 0 chr9 5011551 5011574 -112851053 + AT_rich Low_complexity Low_complexity 1 23 0 311 218 46 35 chr9 5011901 5011988 -112850639 - L3 LINE CR1 -7 1570 1483 43 35 0 0 chr9 5012628 5012685 -112849942 + AT_rich Low_complexity Low_complexity 1 57 0 530 211 37 9 chr9 5013367 5013476 -112849151 - MER81 DNA DNA 0 114 3 198 103 0 0 chr9 5013793 5013822 -112848805 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 314 84 35 chr9 5014185 5014403 -112848224 + L1M4 LINE L1 2880 3117 -3029 303 28 0 0 chr9 5014403 5014439 -112848188 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 291 314 84 35 chr9 5014439 5014507 -112848120 + L1M4 LINE L1 3117 3180 -2966 187 284 84 63 chr9 5014739 5014834 -112847793 - MIR SINE MIR -59 149 53 268 284 159 35 chr9 5015311 5015543 -112847084 - L3 LINE CR1 -19 1558 1298 742 223 0 0 chr9 5016144 5016265 -112846362 - FLAM_A SINE Alu -12 121 1 689 247 45 40 chr9 5016265 5016512 -112846115 + L1ME4a LINE L1 5588 5835 -286 347 215 50 91 chr9 5017091 5017212 -112845415 - MLT1H LTR MaLR 0 549 434 888 137 0 0 chr9 5017335 5017466 -112845161 + AluSg/x SINE Alu 176 306 -4 1913 140 0 47 chr9 5017929 5018250 -112844377 - AluSx SINE Alu -6 306 1 214 340 0 10 chr9 5020737 5020840 -112841787 + (CCA)n Simple_repeat Simple_repeat 1 102 0 2398 68 3 0 chr9 5021231 5021526 -112841101 - AluY SINE Alu 0 311 16 306 0 0 0 chr9 5021845 5021879 -112840748 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1877 153 0 33 chr9 5021974 5022281 -112840346 - AluSx SINE Alu -15 297 1 1601 182 20 10 chr9 5022516 5022818 -112839809 - AluJb SINE Alu -7 305 1 586 240 6 55 chr9 5022821 5023004 -112839623 - L1ME2 LINE L1 -36 6128 5955 588 240 94 36 chr9 5023018 5023222 -112839405 - L1ME2 LINE L1 -633 5537 5289 851 206 12 0 chr9 5023222 5023382 -112839245 - FRAM SINE Alu -1 165 4 588 240 94 36 chr9 5023382 5023491 -112839136 - L1ME2 LINE L1 -881 5289 5188 442 154 22 33 chr9 5023497 5023588 -112839039 - Charlie1a DNA MER1_type -633 822 733 44785 39 3 0 chr9 5023594 5029726 -112832901 - L1PA4 LINE L1 -6 6149 8 509 194 31 0 chr9 5029733 5029831 -112832796 - Charlie1a DNA MER1_type -710 745 645 827 236 6 0 chr9 5029843 5030000 -112832627 + AluJb SINE Alu 148 305 -7 1460 189 61 10 chr9 5030019 5030331 -112832296 - Charlie1a DNA MER1_type -803 652 325 5564 153 19 38 chr9 5030332 5031071 -112831556 + L1MC2 LINE L1 5308 6023 -321 2355 78 0 10 chr9 5031071 5031377 -112831250 - AluY SINE Alu -8 303 1 5564 153 19 38 chr9 5031377 5031682 -112830945 + L1MC2 LINE L1 6023 6332 -12 1180 181 7 90 chr9 5031682 5031970 -112830657 - Charlie1a DNA MER1_type -1110 345 82 642 250 69 50 chr9 5031992 5032352 -112830275 - L1MDb LINE L1 -4831 1575 1209 2319 91 10 0 chr9 5032371 5032667 -112829960 + AluSx SINE Alu 1 299 -13 2931 9 0 0 chr9 5032685 5033001 -112829626 + AluYb8 SINE Alu 1 316 -2 888 145 52 6 chr9 5033146 5033318 -112829309 - L1MA7 LINE L1 -6 6285 6106 441 245 44 33 chr9 5033336 5033593 -112829034 - L1MDb LINE L1 -5179 1217 938 * 5208 179 27 28 chr9 5033583 5034537 -112828090 + L1 LINE L1 818 1770 -5398 1798 158 22 0 chr9 5034530 5034890 -112827737 + L1 LINE L1 5284 5651 -1516 * 680 122 65 0 chr9 5034895 5035018 -112827609 - L1MA4 LINE L1 -17 6283 6153 1327 275 43 37 chr9 5035024 5035515 -112827112 - L1M3b LINE L1 -5777 504 11 871 210 125 23 chr9 5035533 5036001 -112826626 - L1M4c LINE L1 -4137 2509 1914 674 144 0 0 chr9 5036022 5036126 -112826501 + AluSg/x SINE Alu 170 273 -39 789 157 31 6 chr9 5036173 5036332 -112826295 - L1MC/D LINE L1 -756 5577 5415 8869 155 91 86 chr9 5036337 5036405 -112826222 - L1MCa LINE L1 -3948 2478 2412 1877 183 0 16 chr9 5036405 5036722 -112825905 - AluJo SINE Alu 0 312 1 8869 155 91 86 chr9 5036722 5037196 -112825431 - L1MCa LINE L1 -4014 2412 1942 226 185 0 74 chr9 5037196 5037250 -112825377 - Alu SINE Alu -252 50 1 8869 155 91 86 chr9 5037250 5039147 -112823480 - L1MCa LINE L1 -4484 1942 56 3488 217 66 22 chr9 5039168 5040596 -112822031 - L1M4c LINE L1 -4726 1920 448 628 264 58 14 chr9 5040735 5041012 -112821615 - L1ME4a LINE L1 -296 5825 5537 442 306 153 6 chr9 5041116 5041273 -112821354 - MER5A DNA MER1_type -1 188 9 1153 122 0 43 chr9 5042486 5042674 -112819953 - AluSg/x SINE Alu -1 311 132 511 343 23 23 chr9 5043457 5043629 -112818998 + MER5B DNA MER1_type 3 174 -4 701 152 23 38 chr9 5043641 5043773 -112818854 + MER5B DNA MER1_type 1 130 -48 279 262 0 0 chr9 5043810 5043871 -112818756 + MER5B DNA MER1_type 118 178 0 599 207 200 0 chr9 5043944 5044094 -112818533 - MER5A DNA MER1_type 0 189 10 1777 139 89 4 chr9 5044252 5044533 -112818094 - AluSx SINE Alu -7 305 1 345 47 0 0 chr9 5044784 5044827 -112817800 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 238 39 28 chr9 5045190 5045344 -112817283 - HAL1b LINE L1 -12 1336 1233 206 158 26 0 chr9 5045344 5045382 -112817245 + T-rich Low_complexity Low_complexity 2 40 0 2033 135 0 3 chr9 5046193 5046482 -112816145 + AluSx SINE Alu 6 293 -19 1453 250 69 40 chr9 5046702 5047250 -112815377 + L2 LINE L2 847 1410 -1904 686 286 57 74 chr9 5047466 5047638 -112814989 + LTR16B LTR ERVL 118 282 -182 3074 147 17 28 chr9 5047638 5048242 -112814385 - L1MB8 LINE L1 0 6178 5582 686 286 57 74 chr9 5048242 5048422 -112814205 + LTR16B LTR ERVL 282 464 0 2828 234 119 60 chr9 5048426 5049520 -112813107 + L2 LINE L2 1512 2669 -645 273 193 122 92 chr9 5049531 5049769 -112812858 + L1MC5 LINE L1 7639 7883 -78 377 268 151 34 chr9 5049777 5049797 -112812830 + HAL1b LINE L1 444 460 -888 3234 143 38 4 chr9 5049797 5050329 -112812298 + MER44D DNA MER2_type 1 605 0 377 268 151 34 chr9 5050329 5050375 -112812252 + HAL1b LINE L1 460 499 -849 2508 71 0 3 chr9 5050375 5050684 -112811943 + AluY SINE Alu 1 308 -3 377 268 151 34 chr9 5050684 5050907 -112811720 + HAL1b LINE L1 499 768 -580 2031 126 13 10 chr9 5050958 5051259 -112811368 - AluSx SINE Alu -9 303 2 324 288 65 52 chr9 5051293 5051446 -112811181 + MIR SINE MIR 18 172 -90 398 278 254 28 chr9 5051488 5051772 -112810855 - L2 LINE L2 -38 3275 2928 234 167 167 0 chr9 5052107 5052161 -112810466 - MIR SINE MIR -90 172 110 352 275 28 28 chr9 5052426 5052535 -112810092 - L2 LINE L2 0 3313 3205 1156 181 0 0 chr9 5053194 5053382 -112809245 - MER5A DNA MER1_type 0 189 2 555 312 73 12 chr9 5053639 5053886 -112808741 + MIR SINE MIR 1 262 0 397 327 31 6 chr9 5053881 5054040 -112808587 - MIR SINE MIR -26 236 74 * 225 356 27 0 chr9 5054270 5054343 -112808284 + L2 LINE L2 3195 3269 -3 351 295 89 85 chr9 5054398 5055008 -112807619 + L1ME4a LINE L1 5495 6121 0 2061 128 3 3 chr9 5056795 5057114 -112805513 - AluY SINE Alu 0 311 1 192 308 10 92 chr9 5057840 5058035 -112804592 - L3 LINE CR1 -708 869 691 433 260 122 25 chr9 5058067 5058263 -112804364 - MIR SINE MIR -42 220 6 216 320 48 29 chr9 5058264 5058367 -112804260 + MER5B DNA MER1_type 5 109 -69 253 307 122 42 chr9 5058406 5058595 -112804032 - L3 LINE CR1 -931 646 443 1429 245 49 56 chr9 5059709 5060223 -112802404 + L2 LINE L2 2804 3313 0 333 261 59 128 chr9 5060600 5060937 -112801690 + L1M2 LINE L1 662 975 -5874 319 289 99 99 chr9 5060837 5061565 -112801062 - L1M2 LINE L1 -5479 1370 776 * 1292 156 115 0 chr9 5062522 5062828 -112799799 - MER46B DNA MER2_type -8 228 1 248 289 256 39 chr9 5063246 5063331 -112799296 + MIR SINE MIR 9 74 -188 2358 103 0 0 chr9 5063331 5063641 -112798986 + AluSx SINE Alu 1 310 -2 248 289 256 39 chr9 5063641 5063735 -112798892 + MIR SINE MIR 74 227 -35 876 195 118 10 chr9 5064129 5064441 -112798186 + MER119 DNA MER1_type 137 583 0 300 320 80 8 chr9 5066082 5066207 -112796420 - MIR3 SINE MIR -9 199 66 185 328 40 34 chr9 5066224 5066401 -112796226 - L2 LINE L2 -889 2425 2248 538 297 36 5 chr9 5067619 5067811 -112794816 + L2 LINE L2 1471 1668 -1646 1451 207 134 88 chr9 5067822 5068367 -112794260 - MLT1G LTR MaLR -12 578 14 3242 138 71 3 chr9 5069626 5070192 -112792435 + MER6A DNA MER2_type 2 605 0 825 201 37 27 chr9 5070201 5070385 -112792242 - MER5A DNA MER1_type -3 175 1 911 239 4 39 chr9 5070393 5070623 -112792004 - MER58A DNA MER1_type 0 224 3 358 254 91 0 chr9 5070629 5070739 -112791888 + L2 LINE L2 1707 1826 -1488 289 303 175 20 chr9 5070790 5071041 -112791586 - L1MC/D LINE L1 -2105 5703 5414 1667 123 4 0 chr9 5072101 5072368 -112790259 + AluSq SINE Alu 58 325 0 25 31 0 0 chr9 5072390 5072422 -112790205 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr9 5072630 5072665 -112789962 + AT_rich Low_complexity Low_complexity 1 35 0 1771 154 13 16 chr9 5072799 5073110 -112789517 - AluJb SINE Alu -2 310 1 2459 140 29 7 chr9 5073112 5073527 -112789100 - MSTA LTR MaLR -4 424 1 2421 87 0 0 chr9 5074133 5074432 -112788195 - AluSg SINE Alu -11 299 1 217 161 54 0 chr9 5074597 5074653 -112787974 + A-rich Low_complexity Low_complexity 2 60 0 2234 49 32 14 chr9 5074716 5075000 -112787627 - AluY SINE Alu -20 291 3 1213 79 57 6 chr9 5075381 5075558 -112787069 - MLT2A1 LTR ERVL -8 436 251 436 131 0 0 chr9 5075563 5075624 -112787003 - AluS SINE Alu -255 63 3 273 272 44 44 chr9 5075799 5075935 -112786692 - L1M4 LINE L1 -660 5518 5383 780 192 5 101 chr9 5076671 5076890 -112785737 - MER74B LTR ERVL -367 255 58 2738 222 52 15 chr9 5076891 5077707 -112784920 - L1M4 LINE L1 -1805 4341 3496 6739 64 12 5 chr9 5077813 5079066 -112783561 + L1PA7 LINE L1 4893 6154 0 189 345 101 17 chr9 5081799 5081918 -112780709 - L3b LINE CR1 -99 1484 1356 27 29 0 0 chr9 5082044 5082078 -112780549 + AT_rich Low_complexity Low_complexity 1 34 0 316 290 101 5 chr9 5082526 5082743 -112779884 + L1ME4a LINE L1 5645 5882 -239 396 0 0 0 chr9 5085252 5085296 -112777331 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr9 5085295 5085320 -112777307 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1978 116 7 0 chr9 5085989 5086266 -112776361 - AluSq SINE Alu 0 313 35 274 250 107 68 chr9 5086746 5086951 -112775676 + MLT1J LTR MaLR 61 311 -200 703 19 48 0 chr9 5087111 5087216 -112775411 + (TAGA)n Simple_repeat Simple_repeat 2 111 0 21 0 0 0 chr9 5087762 5087783 -112774844 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5087934 5087956 -112774671 + AT_rich Low_complexity Low_complexity 1 22 0 2370 190 51 0 chr9 5088550 5089039 -112773588 + LTR53 LTR ERVL 6 519 0 195 357 97 32 chr9 5089133 5089441 -112773186 + L2 LINE L2 2634 2961 -353 1992 146 73 2 chr9 5090456 5090880 -112771747 - L1MCa LINE L1 -4112 2314 1861 933 18 0 0 chr9 5091718 5091827 -112770800 - L1PA2 LINE L1 0 6155 6047 487 20 2 0 chr9 5091827 5091900 -112770727 + L1M LINE L1 5279 5352 -812 2939 206 35 21 chr9 5092624 5093429 -112769198 - L1 LINE L1 -3153 2993 2178 786 158 0 29 chr9 5093436 5093607 -112769020 - L1MA7 LINE L1 0 6291 6126 5039 237 98 6 chr9 5093608 5094872 -112767755 + L1M2a LINE L1 -779 600 -5783 4162 222 48 29 chr9 5094866 5096199 -112766428 + L1M2a LINE L1 911 2064 -4320 * 4535 64 25 3 chr9 5096199 5096791 -112765836 - L1PA7 LINE L1 0 6154 5550 4162 222 48 29 chr9 5096791 5097221 -112765406 + L1M2a LINE L1 2064 2484 -3900 896 133 0 0 chr9 5097237 5097357 -112765270 + AluSg/x SINE Alu 174 293 -17 1077 225 44 24 chr9 5097558 5097887 -112764740 + L1MC/D LINE L1 5263 5601 -2207 297 51 0 0 chr9 5097887 5097926 -112764701 + (TG)n Simple_repeat Simple_repeat 2 40 0 869 131 0 8 chr9 5097943 5098065 -112764562 - AluSq/x SINE Alu -192 121 1 2197 121 0 0 chr9 5099880 5100177 -112762450 - AluSx SINE Alu -14 298 2 2020 143 0 7 chr9 5100263 5100563 -112762064 - AluSx SINE Alu -14 298 1 238 304 328 12 chr9 5101223 5101473 -112761154 + L2 LINE L2 2984 3312 -1 268 225 36 0 chr9 5101479 5101590 -112761037 + GA-rich Low_complexity Low_complexity 3 117 0 432 222 116 62 chr9 5102751 5103268 -112759359 + MER34 LTR ERV1 42 542 0 1882 148 3 7 chr9 5103656 5103963 -112758664 + AluSx SINE Alu 1 306 0 33 43 0 0 chr9 5104959 5105006 -112757621 + AT_rich Low_complexity Low_complexity 1 47 0 494 292 149 11 chr9 5106124 5106487 -112756140 - LTR33 LTR ERVL -87 434 22 22 0 0 0 chr9 5106789 5106811 -112755816 + AT_rich Low_complexity Low_complexity 1 22 0 22418 112 13 29 chr9 5106821 5108914 -112753713 + L1P LINE L1 11 2136 -4010 2855 22 0 0 chr9 5108914 5109231 -112753396 + AluYb8 SINE Alu 1 317 -1 22418 112 13 29 chr9 5109231 5110249 -112752378 + L1P LINE L1 2136 3054 -3092 2410 84 0 0 chr9 5110249 5110558 -112752069 + AluY SINE Alu 1 309 -2 22418 112 13 29 chr9 5110558 5111239 -112751388 + L1P LINE L1 3054 3744 -2402 3835 56 14 0 chr9 5111239 5111720 -112750907 + L1PA6 LINE L1 5660 6152 -2 507 329 18 28 chr9 5111735 5112124 -112750503 + L1MC4a LINE L1 5548 5932 -1876 2199 84 24 10 chr9 5112513 5112809 -112749818 - AluSq SINE Alu -13 300 1 6320 136 8 1 chr9 5113169 5114230 -112748397 + L1P LINE L1 3242 4310 -1836 261 0 0 0 chr9 5116882 5116911 -112745716 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 5117228 5117252 -112745375 + AT_rich Low_complexity Low_complexity 1 24 0 283 276 126 14 chr9 5117695 5117909 -112744718 + L1ME4a LINE L1 5645 5882 -239 21 0 0 0 chr9 5120353 5120374 -112742253 + AT_rich Low_complexity Low_complexity 1 21 0 194 146 0 24 chr9 5120416 5120457 -112742170 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 2032 104 0 22 chr9 5121128 5121406 -112741221 - AluSq SINE Alu -7 306 35 4244 220 59 15 chr9 5121746 5122366 -112740261 + L1MA9 LINE L1 2527 3118 -3028 2141 145 3 0 chr9 5122366 5122677 -112739950 - AluSx SINE Alu 0 312 1 4244 220 59 15 chr9 5122677 5123354 -112739273 + L1MA9 LINE L1 3118 3881 -2265 2842 99 9 5 chr9 5123362 5123784 -112738843 + L1PB1 LINE L1 5728 6151 0 1711 134 39 36 chr9 5123823 5124159 -112738468 + L1MC3 LINE L1 7441 7777 -8 504 295 5 37 chr9 5124246 5124436 -112738191 + MIR SINE MIR 78 261 -1 4392 181 22 22 chr9 5124517 5125516 -112737111 + L1MA6 LINE L1 5299 6297 -3 6281 192 17 40 chr9 5125521 5127000 -112735627 + L1MA9 LINE L1 3928 5439 -873 2744 20 0 0 chr9 5127000 5127305 -112735322 + AluY SINE Alu 1 305 -6 6281 192 17 40 chr9 5127305 5127705 -112734922 + L1MA9 LINE L1 5439 5757 -555 195 42 0 0 chr9 5127705 5127729 -112734898 + (TG)n Simple_repeat Simple_repeat 1 24 0 6281 192 17 40 chr9 5127729 5128192 -112734435 + L1MA9 LINE L1 5757 6229 -83 351 164 0 0 chr9 5128217 5128272 -112734355 - MER2 DNA MER2_type -10 335 281 * 638 278 11 6 chr9 5128246 5128422 -112734205 - MER8 DNA MER2_type -60 179 3 692 244 121 22 chr9 5128574 5128939 -112733688 - L1M1 LINE L1 -4200 3365 2965 1058 181 0 0 chr9 5128939 5129110 -112733517 + AluSg/x SINE Alu 132 302 -8 2305 269 57 12 chr9 5129110 5129484 -112733143 - L1M2 LINE L1 -4271 2897 2541 2315 90 3 0 chr9 5129484 5129785 -112732842 - AluY SINE Alu -9 302 1 2305 269 57 12 chr9 5129785 5130619 -112732008 - L1M2 LINE L1 -4627 2541 1623 306 106 0 0 chr9 5131427 5131474 -112731153 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 250 25 50 chr9 5131726 5131846 -112730781 - L1MC5 LINE L1 -44 7917 7801 426 184 117 81 chr9 5131887 5132110 -112730517 - L1ME2 LINE L1 -24 6140 5910 21 0 0 0 chr9 5134691 5134712 -112727915 + AT_rich Low_complexity Low_complexity 1 21 0 316 316 105 0 chr9 5134794 5134927 -112727700 + MIR3 SINE MIR 52 198 -10 27 0 0 0 chr9 5135636 5135663 -112726964 + AT_rich Low_complexity Low_complexity 1 27 0 250 313 70 62 chr9 5136504 5136781 -112725846 + L2 LINE L2 2755 3028 -244 695 255 39 77 chr9 5136927 5137237 -112725390 + L2 LINE L2 3010 3307 -6 459 278 125 37 chr9 5137517 5137733 -112724894 + MIR SINE MIR 23 257 -5 22 0 0 0 chr9 5137974 5137996 -112724631 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 5138013 5138045 -112724582 + AT_rich Low_complexity Low_complexity 1 32 0 1900 131 48 3 chr9 5138952 5139242 -112723385 - AluSx SINE Alu -9 303 1 1799 203 71 30 chr9 5139697 5140204 -112722423 + MER63C DNA MER1_type 1 528 -402 779 214 99 5 chr9 5140205 5140406 -112722221 - MER58A DNA MER1_type -4 220 1 1270 211 53 65 chr9 5140406 5140824 -112721803 + MER63C DNA MER1_type 518 930 0 201 225 87 55 chr9 5141284 5141382 -112721245 + MIR SINE MIR 85 187 -55 492 213 21 112 chr9 5143974 5144162 -112718465 + MER5B DNA MER1_type 4 174 -4 4056 200 48 46 chr9 5144267 5145353 -112717274 + L1MC3 LINE L1 6018 7105 -680 316 247 12 0 chr9 5145355 5145440 -112717187 + MLT1F1 LTR MaLR 39 124 -443 897 234 62 4 chr9 5145459 5145733 -112716894 + L1MC3 LINE L1 7495 7784 -1 1806 183 13 38 chr9 5146450 5146899 -112715728 + L1 LINE L1 3952 4389 -1757 417 81 0 0 chr9 5146899 5146961 -112715666 + (CA)n Simple_repeat Simple_repeat 2 63 0 5842 109 28 2 chr9 5146975 5148632 -112713995 + L1PA16 LINE L1 4480 6165 -1 6657 47 37 6 chr9 5148636 5150008 -112712619 + L1PA7 LINE L1 4778 6177 0 2536 100 17 0 chr9 5151197 5151546 -112711081 + THE1A LTR MaLR 1 355 0 2003 90 4 4 chr9 5151879 5152135 -112710492 - AluSc SINE Alu -17 292 37 225 337 49 18 chr9 5152296 5152459 -112710168 - LTR67 LTR ERVL -19 538 371 451 219 50 17 chr9 5152767 5152886 -112709741 - MIR SINE MIR -111 151 29 189 331 44 37 chr9 5153071 5153207 -112709420 + L2 LINE L2 1772 1908 -1406 1433 196 79 0 chr9 5153410 5153690 -112708937 + AluJb SINE Alu 1 302 0 297 338 89 14 chr9 5153843 5154056 -112708571 + L2 LINE L2 2088 2316 -998 276 369 130 27 chr9 5154101 5154432 -112708195 + L2 LINE L2 2549 2913 -401 270 309 128 21 chr9 5154446 5154540 -112708087 + MIR SINE MIR 20 123 -139 3375 144 20 8 chr9 5155577 5156181 -112706446 + L1MB3 LINE L1 5478 6088 -95 644 250 60 6 chr9 5156193 5156369 -112706258 + MIR SINE MIR 7 185 -27 296 236 27 73 chr9 5156369 5156479 -112706148 + L1MC4a LINE L1 5530 5634 -2174 183 42 0 0 chr9 5156529 5156553 -112706074 + (CAT)n Simple_repeat Simple_repeat 2 25 0 317 217 60 0 chr9 5156566 5156649 -112705978 + L1MC4a LINE L1 5835 5922 -1886 192 77 0 0 chr9 5156657 5156683 -112705944 + (CATA)n Simple_repeat Simple_repeat 3 28 0 25 31 0 0 chr9 5156865 5156897 -112705730 + AT_rich Low_complexity Low_complexity 1 32 0 398 295 10 82 chr9 5157951 5158158 -112704469 + HAL1 LINE L1 762 953 -1554 572 228 66 12 chr9 5158310 5158477 -112704150 + L1ME3A LINE L1 5836 6011 -159 317 324 86 31 chr9 5158534 5158930 -112703697 + L1ME LINE L1 2397 2824 -3322 604 163 108 0 chr9 5159264 5159393 -112703234 - MER3 DNA MER1_type -1 208 66 513 323 86 14 chr9 5159520 5159950 -112702677 + L1ME LINE L1 5338 5798 -323 2393 76 0 16 chr9 5159975 5160291 -112702336 + AluY SINE Alu 1 311 0 268 271 29 71 chr9 5160291 5160431 -112702196 - MIR SINE MIR -2 260 127 * 809 253 53 32 chr9 5160407 5160692 -112701935 + L2 LINE L2 3021 3311 -2 1818 129 97 23 chr9 5160701 5161050 -112701577 + THE1C LTR MaLR 1 375 0 2337 121 3 16 chr9 5161071 5161451 -112701176 + THE1-int LTR MaLR 549 923 -657 235 174 0 0 chr9 5161502 5161548 -112701079 - MSTA LTR MaLR 0 428 383 619 305 103 47 chr9 5162246 5162811 -112699816 - L2 LINE L2 -217 3055 2454 1127 233 99 35 chr9 5162817 5163251 -112699376 + MLT1C LTR MaLR 6 467 0 3366 104 87 0 chr9 5163281 5163763 -112698864 - MER1A DNA MER1_type 0 527 4 251 318 73 0 chr9 5163784 5163894 -112698733 - L2 LINE L2 -896 2418 2301 205 316 131 53 chr9 5163957 5164201 -112698426 - L2 LINE L2 -1018 2296 2034 25 0 0 0 chr9 5164780 5164805 -112697822 + AT_rich Low_complexity Low_complexity 1 25 0 438 296 10 36 chr9 5164862 5165058 -112697569 - L2 LINE L2 -410 2904 2714 815 88 0 0 chr9 5165239 5165341 -112697286 - AluY SINE Alu -162 149 48 1480 257 41 33 chr9 5165631 5166144 -112696483 + LTR40a LTR ERVL 3 519 0 1072 165 46 46 chr9 5166234 5166452 -112696175 + MER20 DNA MER1_type 2 219 0 416 325 8 0 chr9 5166789 5166906 -112695721 - L2 LINE L2 -380 2934 2817 287 329 206 0 chr9 5166923 5167069 -112695558 - MER5A DNA MER1_type 0 189 14 542 250 68 0 chr9 5167081 5167213 -112695414 - L2 LINE L2 -505 2809 2669 1398 246 55 14 chr9 5167245 5167684 -112694943 + L1ME3 LINE L1 5698 6154 -8 750 254 17 0 chr9 5167705 5167882 -112694745 - L2 LINE L2 -647 2667 2488 1139 251 52 25 chr9 5167892 5168254 -112694373 - L2 LINE L2 -1010 2304 1933 182 265 20 0 chr9 5168277 5168326 -112694301 + MIR SINE MIR 202 251 -11 792 229 6 0 chr9 5168650 5168807 -112693820 + MIR SINE MIR 102 259 -3 2038 215 45 6 chr9 5168826 5169361 -112693266 - MER90 LTR ERV1 0 575 20 180 296 28 42 chr9 5169546 5169617 -112693010 + L3 LINE CR1 276 345 -1232 321 118 0 0 chr9 5170084 5170135 -112692492 + (TG)n Simple_repeat Simple_repeat 2 52 0 184 239 65 0 chr9 5170601 5170647 -112691980 + MIR SINE MIR 158 206 -56 184 224 0 61 chr9 5171185 5171234 -112691393 - L2 LINE L2 -2886 428 383 750 291 45 5 chr9 5172440 5172663 -112689964 + MIR SINE MIR 30 261 -1 2389 102 0 0 chr9 5172729 5173034 -112689593 - AluSx SINE Alu -7 305 1 2328 94 0 0 chr9 5174299 5174598 -112688029 - AluSx SINE Alu -6 306 8 2304 112 0 0 chr9 5175781 5176085 -112686542 - AluSx SINE Alu -7 305 2 2193 117 0 29 chr9 5176171 5176487 -112686140 - AluSx SINE Alu -5 307 1 299 261 318 15 chr9 5177152 5177416 -112685211 + L2 LINE L2 2969 3312 -1 329 266 0 8 chr9 5177418 5177546 -112685081 + GA-rich Low_complexity Low_complexity 3 129 0 454 249 98 61 chr9 5178696 5179216 -112683411 + LTR48 LTR ERV1 1 787 0 1987 120 3 7 chr9 5179599 5179915 -112682712 + AluSx SINE Alu 1 315 0 189 361 76 25 chr9 5180533 5180652 -112681975 + L2 LINE L2 3188 3312 -1 26 64 0 0 chr9 5180911 5180958 -112681669 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 5181695 5181716 -112680911 + AT_rich Low_complexity Low_complexity 1 21 0 671 280 123 23 chr9 5182115 5182544 -112680083 - LTR33 LTR ERVL -28 493 22 2536 71 0 3 chr9 5183107 5183417 -112679210 - AluSq SINE Alu -4 309 1 13377 124 10 1 chr9 5183774 5186660 -112675967 + L1PA10 LINE L1 3242 6158 -10 1880 83 33 14 chr9 5186394 5186660 -112675967 + L1PA10 LINE L1 5885 6158 -10 836 104 24 0 chr9 5186660 5186778 -112675849 + L1PB3 LINE L1 6020 6147 -7 25 0 0 0 chr9 5186778 5186803 -112675824 + AT_rich Low_complexity Low_complexity 1 25 0 224 281 90 0 chr9 5187359 5187448 -112675179 + L2 LINE L2 3217 3313 0 180 77 0 0 chr9 5187771 5187797 -112674830 + (TG)n Simple_repeat Simple_repeat 1 26 0 5348 191 36 8 chr9 5188038 5189046 -112673581 + MST-int LTR MaLR 51 1086 -565 3114 75 18 5 chr9 5189046 5189444 -112673183 + MLT2A1 LTR ERVL 1 403 -41 1904 158 22 33 chr9 5189444 5189804 -112672823 + THE1-int LTR MaLR 1065 1420 -160 28 61 0 0 chr9 5189929 5189978 -112672649 + AT_rich Low_complexity Low_complexity 1 49 0 1277 126 177 52 chr9 5190150 5190421 -112672206 + AluSg1 SINE Alu 5 309 0 242 174 22 0 chr9 5190476 5190522 -112672105 - MER65C LTR ERV1 -312 149 103 2298 121 0 3 chr9 5190994 5191307 -112671320 + AluSx SINE Alu 1 312 0 487 279 16 8 chr9 5191357 5191486 -112671141 - MIR SINE MIR -108 154 25 7959 253 74 40 chr9 5191698 5192240 -112670387 + L1MC4a LINE L1 4475 4997 -2811 1277 199 224 9 chr9 5192240 5192566 -112670061 + MSTD LTR MaLR 1 396 0 7959 253 74 40 chr9 5192566 5193203 -112669424 + L1MC4a LINE L1 4997 5611 -2197 2495 181 66 25 chr9 5193203 5193688 -112668939 + MLT1D LTR MaLR 1 505 0 7959 253 74 40 chr9 5193688 5194063 -112668564 + L1MC4a LINE L1 5611 5972 -1836 2137 117 0 3 chr9 5194063 5194353 -112668274 - AluSx SINE Alu -16 296 8 7959 253 74 40 chr9 5194353 5196021 -112666606 + L1MC4a LINE L1 5972 7807 -1 1459 207 43 6 chr9 5197203 5197551 -112665076 + L1MB5 LINE L1 4922 5282 -864 4161 177 7 45 chr9 5199441 5200304 -112662323 + L1MB5 LINE L1 5328 6157 -17 1395 265 84 25 chr9 5200917 5201484 -112661143 + L2 LINE L2 2712 3313 0 382 278 17 57 chr9 5201512 5201688 -112660939 - MIR SINE MIR -2 260 92 899 220 76 73 chr9 5201691 5202088 -112660539 + L1MC5 LINE L1 6827 7228 -733 784 294 54 21 chr9 5202130 5202537 -112660090 + L1MC5 LINE L1 7260 7630 -178 296 317 128 4 chr9 5202798 5203019 -112659608 - HAL1b LINE L1 -701 1651 400 324 284 92 37 chr9 5203109 5203218 -112659409 + L2 LINE L2 3158 3272 0 268 150 0 50 chr9 5203459 5203519 -112659108 + L2 LINE L2 1951 2007 -1307 1040 193 0 6 chr9 5203582 5203763 -112658864 - AluJb SINE Alu 0 312 133 390 143 89 18 chr9 5203764 5203932 -112658695 + (TA)n Simple_repeat Simple_repeat 1 180 0 343 80 94 25 chr9 5203961 5204188 -112658439 + (TA)n Simple_repeat Simple_repeat 1 242 0 335 144 56 25 chr9 5204223 5204383 -112658244 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 31 68 0 0 chr9 5204383 5204442 -112658185 + AT_rich Low_complexity Low_complexity 1 59 0 321 86 36 64 chr9 5204444 5204584 -112658043 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 279 93 0 0 chr9 5204598 5204641 -112657986 + (GA)n Simple_repeat Simple_repeat 1 43 0 506 171 207 18 chr9 5204663 5204774 -112657853 - AluJb SINE Alu -92 220 89 267 238 89 89 chr9 5205533 5205634 -112656993 + MER5B DNA MER1_type 74 174 -4 1336 194 184 45 chr9 5206525 5206898 -112655729 + LTR40c LTR ERVL 1 435 -30 2912 203 88 33 chr9 5206898 5207593 -112655034 + MER44D DNA MER2_type 1 605 0 1336 194 184 45 chr9 5207593 5207622 -112655005 + LTR40c LTR ERVL 435 459 -6 299 302 17 64 chr9 5207656 5207828 -112654799 + HERVL40 LTR ERVL 20 183 -5347 903 218 68 33 chr9 5207938 5208291 -112654336 + HERVL40 LTR ERVL 918 1353 -4177 1700 184 0 13 chr9 5208579 5208888 -112653739 - AluJo SINE Alu -1 311 7 292 247 82 112 chr9 5208916 5209086 -112653541 + HERVL40 LTR ERVL 1380 1544 -3986 1936 162 141 62 chr9 5209262 5209695 -112652932 - MLT1C LTR MaLR 0 467 1 525 227 61 45 chr9 5209695 5209827 -112652800 + HERVL40 LTR ERVL 2682 2815 -2715 1137 239 81 25 chr9 5209873 5210158 -112652469 + LTR40a LTR ERVL 218 518 -1 635 196 240 11 chr9 5210440 5210619 -112652008 - MIR SINE MIR -38 224 5 1468 171 132 48 chr9 5210856 5211150 -112651477 - MLT1D LTR MaLR -2 503 172 2095 121 27 0 chr9 5211150 5211447 -112651180 + AluSx SINE Alu 1 305 -7 1468 171 132 48 chr9 5211447 5211509 -112651118 - MLT1D LTR MaLR -333 172 117 394 278 79 0 chr9 5212008 5212134 -112650493 + MIR3 SINE MIR 50 185 -23 6025 116 47 21 chr9 5212377 5215231 -112647396 + SVA Other Other 19 1386 0 301 255 277 16 chr9 5218583 5218767 -112643860 + MIR SINE MIR 3 234 -28 187 268 0 0 chr9 5218739 5218780 -112643847 + L2 LINE L2 3211 3251 -21 * 633 225 98 140 chr9 5218790 5219190 -112643437 - LTR33 LTR ERVL -138 383 1 3170 39 0 0 chr9 5219199 5219559 -112643068 - L1PA5 LINE L1 0 6154 5795 2007 161 26 77 chr9 5220206 5220697 -112641930 - MER31B LTR ERV1 0 466 1 1115 289 82 17 chr9 5220793 5221257 -112641370 + LTR33 LTR ERVL 12 505 -16 211 281 0 0 chr9 5221495 5221552 -112641075 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 257 223 36 0 chr9 5221686 5221796 -112640831 - L1MC3 LINE L1 -1139 6702 6571 238 232 29 14 chr9 5221746 5221815 -112640812 + L1MCa LINE L1 1995 2064 -4362 * 263 333 0 0 chr9 5221838 5221928 -112640699 + L1MC4 LINE L1 6614 6703 -1339 231 314 47 0 chr9 5221936 5222022 -112640605 - L1MC4 LINE L1 -1339 6703 6614 3296 145 41 23 chr9 5222571 5223135 -112639492 - L1MB7 LINE L1 -19 6165 5592 1077 219 23 0 chr9 5223194 5223409 -112639218 + MIR SINE MIR 9 228 -34 366 239 0 54 chr9 5224085 5224177 -112638450 + MER21B LTR ERV1 1 87 -776 1248 226 124 6 chr9 5224200 5224523 -112638104 + MER21B LTR ERV1 20 380 -483 4348 39 8 0 chr9 5224627 5225140 -112637487 - L1PA5 LINE L1 -384 5770 5254 3354 58 2 2 chr9 5225151 5225550 -112637077 + L1PA5 LINE L1 5755 6153 -1 241 176 27 0 chr9 5226102 5226176 -112636451 + (TA)n Simple_repeat Simple_repeat 2 77 0 521 311 102 22 chr9 5226193 5226794 -112635833 + L2 LINE L2 2458 3174 -139 269 257 112 73 chr9 5228005 5228184 -112634443 - MER5A DNA MER1_type 0 189 4 229 190 69 0 chr9 5228777 5228835 -112633792 - MIR SINE MIR -98 110 49 424 258 108 24 chr9 5228851 5229018 -112633609 - MER112 DNA MER1_type -9 251 71 424 88 206 15 chr9 5229516 5229584 -112633043 + AluS SINE Alu 4 84 -228 561 287 89 3 chr9 5231159 5231441 -112631186 - L1ME4a LINE L1 -267 5854 5549 803 146 0 8 chr9 5231737 5231867 -112630760 - FLAM_C SINE Alu -8 135 7 2386 80 30 0 chr9 5231908 5232209 -112630418 - AluSx SINE Alu -2 310 1 38 39 0 0 chr9 5232886 5232938 -112629689 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5233221 5233242 -112629385 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 185 33 chr9 5233278 5233641 -112628986 + L1ME4a LINE L1 5581 5998 -123 945 188 16 36 chr9 5233659 5233851 -112628776 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5233908 5233951 -112628676 + AT_rich Low_complexity Low_complexity 1 43 0 2021 221 80 39 chr9 5234389 5235062 -112627565 - L1MD1 LINE L1 0 6242 5542 1082 278 67 9 chr9 5235194 5235630 -112626997 + MLT1C LTR MaLR 1 461 -6 233 200 0 0 chr9 5236135 5236185 -112626442 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 4732 129 6 0 chr9 5240914 5241641 -112620986 - L1PA16 LINE L1 -4 6162 5432 3136 258 50 30 chr9 5242531 5243768 -112618859 - L1MD1 LINE L1 -872 5274 4013 1288 238 84 35 chr9 5244000 5244462 -112618165 - L1MD1 LINE L1 0 6242 5758 414 341 17 12 chr9 5244585 5244758 -112617869 + MER5B DNA MER1_type 5 178 0 351 0 0 0 chr9 5245078 5245117 -112617510 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chr9 5245703 5245725 -112616902 + AT_rich Low_complexity Low_complexity 1 22 0 2858 122 7 5 chr9 5248510 5248937 -112613690 - MSTA LTR MaLR 0 428 1 380 305 19 0 chr9 5249080 5249234 -112613393 - MER5B DNA MER1_type -21 157 1 232 229 33 0 chr9 5250257 5250318 -112612309 - MER5B DNA MER1_type -33 145 83 243 71 214 0 chr9 5250321 5250363 -112612264 + LTR50 LTR ERVL 272 322 -473 595 215 19 65 chr9 5250513 5250774 -112611853 + L1MA4 LINE L1 3210 3458 -4107 * 11406 169 21 41 chr9 5250771 5251332 -112611295 + L1MA4 LINE L1 4156 4727 -2992 2229 114 0 7 chr9 5251332 5251639 -112610988 + AluSx SINE Alu 3 307 -5 11406 169 21 41 chr9 5251639 5254714 -112607913 + L1MA4 LINE L1 4727 7712 -7 900 125 33 20 chr9 5256299 5256451 -112606176 - MSTC LTR MaLR -273 155 2 2030 249 69 25 chr9 5256613 5257307 -112605320 + L1MD1 LINE L1 5509 6233 -9 230 207 0 0 chr9 5257310 5257368 -112605259 + L1MA8 LINE L1 5291 5348 -823 422 163 12 12 chr9 5257379 5257465 -112605162 + L1MB3 LINE L1 6081 6166 -17 1786 178 55 17 chr9 5257485 5257902 -112604725 + L1MA8 LINE L1 5843 6275 -16 356 264 91 30 chr9 5257909 5258140 -112604487 + L1M4 LINE L1 5 249 -6293 356 222 60 26 chr9 5258413 5258530 -112604097 + L1M4 LINE L1 802 922 -5724 231 229 0 0 chr9 5258582 5258630 -112603997 + L1M4 LINE L1 1412 1459 -5116 1752 136 0 4 chr9 5258632 5258889 -112603738 - AluSx SINE Alu -8 304 49 1253 289 43 36 chr9 5258925 5259455 -112603172 + L1M3e LINE L1 1439 1972 -5058 * 5375 48 12 2 chr9 5259454 5260357 -112602270 + L1PA7 LINE L1 5020 5928 -226 1077 137 11 42 chr9 5260357 5260547 -112602080 - THE1B LTR MaLR -180 184 1 1726 150 13 37 chr9 5261059 5261359 -112601268 - AluJo SINE Alu -19 293 1 24 91 0 0 chr9 5261836 5261902 -112600725 + AT_rich Low_complexity Low_complexity 1 66 0 357 326 17 34 chr9 5262907 5263085 -112599542 - MER5B DNA MER1_type -3 175 1 2561 184 8 6 chr9 5263197 5263670 -112598957 + MER101 LTR ERV1 1 474 0 1428 219 66 22 chr9 5263709 5264162 -112598465 + L1MD1 LINE L1 5770 6242 0 2409 228 78 50 chr9 5264432 5264795 -112597832 + L1MB2 LINE L1 4076 4427 -1719 3654 88 32 4 chr9 5264795 5265292 -112597335 + MER9 LTR ERVK 1 511 0 2409 228 78 50 chr9 5265292 5265901 -112596726 + L1MB2 LINE L1 4427 5075 -1071 228 265 163 25 chr9 5265946 5266142 -112596485 + L1MB2 LINE L1 5052 5274 -872 23 0 0 0 chr9 5266474 5266497 -112596130 + AT_rich Low_complexity Low_complexity 1 23 0 21339 173 39 18 chr9 5266688 5272428 -112590199 + L1PA11 LINE L1 914 7609 -3 441 0 0 0 chr9 5272600 5272649 -112589978 + (TG)n Simple_repeat Simple_repeat 1 49 0 1586 128 28 17 chr9 5273151 5273440 -112589187 + LTR22B LTR ERVK 1 292 -200 12290 97 10 1 chr9 5273440 5275097 -112587530 + HERVK22 LTR ERVK 5165 6837 0 2594 140 30 34 chr9 5275097 5275591 -112587036 + LTR22B LTR ERVK 1 492 0 1274 139 29 8 chr9 5278593 5278831 -112583796 + L1MA4 LINE L1 6046 6288 -12 192 326 58 0 chr9 5280112 5280198 -112582429 - L2 LINE L2 -23 3290 3200 1005 214 150 20 chr9 5280501 5280847 -112581780 - MLT1C LTR MaLR -17 450 60 1793 191 42 35 chr9 5280853 5281278 -112581349 - MSTC LTR MaLR 0 428 1 1433 233 50 94 chr9 5281435 5282149 -112580478 + L1MD1 LINE L1 5546 6228 -14 3467 227 38 15 chr9 5282157 5283000 -112579627 + L1MB2 LINE L1 5291 6152 -19 1937 161 79 12 chr9 5283028 5283445 -112579182 + L1MA8 LINE L1 5843 6287 -4 321 254 85 34 chr9 5283451 5283684 -112578943 + L1M4c LINE L1 467 955 -6082 423 0 0 0 chr9 5283875 5283922 -112578705 + (CA)n Simple_repeat Simple_repeat 2 48 0 366 301 175 6 chr9 5284005 5284331 -112578296 + L1M4c LINE L1 1266 1646 -5462 7963 14 0 0 chr9 5284348 5285604 -112577023 - L1HS LINE L1 0 6155 4900 * 18776 24 0 0 chr9 5285599 5287831 -112574796 + L1HS LINE L1 2673 4904 -1242 443 217 24 63 chr9 5287826 5288033 -112574594 + L1M4c LINE L1 1629 1827 -5281 * 1282 313 47 5 chr9 5288028 5288776 -112573851 + L1 LINE L1 3547 4325 -1821 2479 281 46 24 chr9 5288778 5290953 -112571674 + L1M3c LINE L1 1224 3167 -3939 7148 50 0 0 chr9 5290953 5291963 -112570664 - L1PA7 LINE L1 -5 6149 5139 2479 281 46 24 chr9 5291963 5292133 -112570494 + L1M3c LINE L1 3167 3332 -3774 928 173 42 0 chr9 5292167 5292358 -112570269 + L1PB1 LINE L1 2 200 -6663 10602 131 70 16 chr9 5292358 5295577 -112567050 + L1PB1 LINE L1 634 3678 -3189 339 25 0 0 chr9 5295577 5295617 -112567010 + (CA)n Simple_repeat Simple_repeat 2 41 0 10602 131 70 16 chr9 5295617 5295965 -112566662 + L1PB1 LINE L1 3678 6866 -1 2082 252 26 6 chr9 5295975 5296658 -112565969 + L1M3c LINE L1 3348 4044 -3062 682 271 80 3 chr9 5296650 5297023 -112565604 + L1 LINE L1 2810 3211 -2935 * 5007 167 26 7 chr9 5297026 5298757 -112563870 - L1PB4 LINE L1 -12 6201 4246 12763 155 23 31 chr9 5298761 5302148 -112560479 - L1PA6 LINE L1 0 6154 2789 428 128 23 23 chr9 5302159 5302245 -112560382 - L1PB4 LINE L1 -3362 2841 2756 16973 109 31 12 chr9 5302245 5303447 -112559180 - MER57B-int LTR ERV1 -744 6793 5616 6699 112 27 18 chr9 5303447 5304508 -112558119 + MER11C LTR ERVK 1 1071 0 16973 109 31 12 chr9 5304508 5306072 -112556555 - MER57B-int LTR ERV1 -1921 5616 3974 2264 116 11 24 chr9 5306061 5306442 -112556185 - MER57B-int LTR ERV1 -3000 2946 2571 * 838 124 29 0 chr9 5306452 5306589 -112556038 - MER57B-int LTR ERV1 -4616 2921 2781 661 157 0 9 chr9 5306585 5306700 -112555927 - MER57B-int LTR ERV1 -3929 2017 1904 * 3395 134 46 10 chr9 5306701 5307271 -112555356 - MER57B-int LTR ERV1 -4231 3585 3037 204 40 0 0 chr9 5307271 5307296 -112555331 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3395 134 46 10 chr9 5307296 5307499 -112555128 - MER57B-int LTR ERV1 -4779 3037 650 1202 109 0 0 chr9 5307491 5307666 -112554961 - MER57B-int LTR ERV1 -6570 967 793 * 4092 130 24 13 chr9 5307654 5308331 -112554296 - MER57B-int LTR ERV1 -6853 684 1 2508 138 35 19 chr9 5308331 5308758 -112553869 - MER57B LTR ERV1 0 434 1 2299 236 41 70 chr9 5308759 5310437 -112552190 - L1PB4 LINE L1 -3674 2529 690 661 358 42 0 chr9 5310423 5310808 -112551819 - L1PA15-16 LINE L1 -5286 1563 1163 * 848 310 33 35 chr9 5311087 5311638 -112550989 - L1PA15-16 LINE L1 -6297 552 3 3381 180 41 51 chr9 5311639 5312668 -112549959 - L1MCa LINE L1 -4588 1838 731 366 248 19 9 chr9 5313731 5313836 -112548791 - LTR39 LTR ERV1 -81 702 597 992 198 18 94 chr9 5313914 5314253 -112548374 - LTR39 LTR ERV1 -467 316 4 759 299 43 4 chr9 5314393 5314627 -112548000 - MIR SINE MIR 0 262 20 5735 141 11 25 chr9 5315097 5316121 -112546506 + MSTA-int LTR MaLR 572 1580 0 1764 150 203 11 chr9 5316121 5316480 -112546147 + MSTA LTR MaLR 1 428 0 5064 167 33 10 chr9 5317072 5318101 -112544526 - Ricksha_b DNA DNA -13 1241 240 573 197 71 0 chr9 5318112 5318239 -112544388 - Ricksha_b DNA DNA -1117 137 2 2847 232 43 20 chr9 5318906 5319669 -112542958 + L1MCa LINE L1 31 811 -5615 2615 212 16 18 chr9 5319665 5320448 -112542179 + L1PA15-16 LINE L1 1637 2428 -4369 * 2475 116 13 16 chr9 5320516 5320903 -112541724 + MSTB1 LTR MaLR 1 386 -46 5396 146 4 10 chr9 5320903 5322179 -112540448 + L1PA15 LINE L1 4879 6144 -21 2421 247 135 73 chr9 5322196 5322981 -112539646 + L1M4 LINE L1 2247 2982 -3164 1830 164 7 68 chr9 5322981 5323408 -112539219 + MER57A LTR ERV1 3 403 0 2421 247 135 73 chr9 5323408 5323687 -112538940 + L1M4 LINE L1 2982 3242 -2904 2030 139 0 0 chr9 5323687 5323981 -112538646 + AluSx SINE Alu 1 294 -18 2421 247 135 73 chr9 5323981 5324298 -112538329 + L1M4 LINE L1 3242 3538 -2608 2193 108 14 0 chr9 5324298 5324584 -112538043 + AluSc SINE Alu 1 290 -19 2421 247 135 73 chr9 5324584 5324645 -112537982 + L1M4 LINE L1 3538 3594 -2552 13474 89 9 0 chr9 5324645 5327356 -112535271 + L1PA8 LINE L1 3425 6170 -2 2421 247 135 73 chr9 5327356 5327654 -112534973 + L1M4 LINE L1 3594 4099 -2047 2067 166 42 14 chr9 5327663 5328096 -112534531 + L1MA7 LINE L1 5528 5972 -328 760 228 30 42 chr9 5328095 5328332 -112534295 + L1MCb LINE L1 605 838 -5207 * 2447 200 73 10 chr9 5328343 5329042 -112533585 + L1MCb LINE L1 893 1635 -4929 881 194 0 0 chr9 5329046 5329216 -112533411 + L1MB4 LINE L1 3999 4168 -1978 1875 259 75 26 chr9 5329349 5330039 -112532588 - L1M2b LINE L1 -6485 724 1 1515 145 25 0 chr9 5330068 5330350 -112532277 + L1MA7 LINE L1 6001 6289 -2 3247 165 23 59 chr9 5330376 5330735 -112531892 + L1MB4 LINE L1 5435 5805 -375 339 25 0 0 chr9 5330735 5330775 -112531852 + (TG)n Simple_repeat Simple_repeat 2 41 0 3247 165 23 59 chr9 5330775 5331189 -112531438 + L1MB4 LINE L1 5805 6180 0 5009 178 23 22 chr9 5331193 5331481 -112531146 + L1MC2 LINE L1 5023 5309 -1035 12364 161 19 15 chr9 5331481 5332930 -112529697 - L1PA11 LINE L1 -4 6170 4729 197 33 33 0 chr9 5332930 5332960 -112529667 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 12364 161 19 15 chr9 5332960 5334653 -112527974 - L1PA11 LINE L1 -1445 4729 3022 5009 178 23 22 chr9 5334653 5335679 -112526948 + L1MC2 LINE L1 5309 6343 -1 1022 161 15 62 chr9 5335679 5335928 -112526699 + L1MC2 LINE L1 6089 6336 -8 274 256 82 73 chr9 5336265 5336498 -112526129 + MLT1J LTR MaLR 61 333 -178 24745 105 16 14 chr9 5337331 5342518 -112520109 + L1P3 LINE L1 10 5255 -1206 13582 160 19 46 chr9 5342520 5345101 -112517526 - L1M2 LINE L1 -4337 2512 1 1575 164 10 31 chr9 5345400 5345693 -112516934 - AluJb SINE Alu -25 287 1 26 0 0 0 chr9 5346051 5346077 -112516550 + AT_rich Low_complexity Low_complexity 1 26 0 2049 114 41 6 chr9 5346769 5347112 -112515515 - L1MA4A LINE L1 -138 6165 5811 2029 216 64 11 chr9 5347114 5347568 -112515059 - L1M2 LINE L1 -6361 488 11 334 186 14 0 chr9 5347562 5347632 -112514995 - L1M4 LINE L1 -5603 939 869 * 2383 86 0 0 chr9 5347735 5348025 -112514602 + AluY SINE Alu 1 290 -21 1121 279 75 83 chr9 5348140 5348972 -112513655 - L1M4 LINE L1 -5716 826 2 214 172 0 35 chr9 5349214 5349272 -112513355 + CT-rich Low_complexity Low_complexity 2 57 0 1741 156 52 0 chr9 5349290 5349579 -112513048 - AluSx SINE Alu -8 304 1 423 263 95 22 chr9 5349820 5350094 -112512533 - L1M4 LINE L1 -2984 3864 3571 226 222 0 0 chr9 5350458 5350503 -112512124 + (TG)n Simple_repeat Simple_repeat 2 46 0 523 267 119 9 chr9 5350573 5350783 -112511844 - Charlie2 DNA MER1_type 0 2862 2630 14903 131 21 12 chr9 5350963 5353359 -112509268 - Tigger1 DNA MER2_type -2 2416 1 444 266 101 60 chr9 5354224 5354423 -112508204 - MIR SINE MIR -42 220 14 26 0 0 0 chr9 5354607 5354633 -112507994 + AT_rich Low_complexity Low_complexity 1 26 0 340 312 72 38 chr9 5354641 5354878 -112507749 + L1 LINE L1 4268 4512 -1634 42144 49 11 1 chr9 5355532 5361626 -112501001 + L1PA4 LINE L1 1 6151 -4 7323 225 46 14 chr9 5361933 5362300 -112500327 + L1MB7 LINE L1 3365 3719 -2427 1207 179 8 49 chr9 5362300 5362546 -112500081 - MER46A DNA MER2_type 0 236 1 7323 225 46 14 chr9 5362546 5362979 -112499648 + L1MB7 LINE L1 3719 4137 -2009 1945 169 33 0 chr9 5362979 5363311 -112499316 - MER2 DNA MER2_type -1 343 1 7323 225 46 14 chr9 5363311 5364481 -112498146 + L1MB7 LINE L1 4137 5400 -746 2837 19 0 0 chr9 5365881 5366197 -112496430 - AluYb8 SINE Alu -2 316 1 332 252 89 158 chr9 5366434 5366859 -112495768 - L1M4 LINE L1 -5907 942 547 2662 167 22 3 chr9 5367106 5367736 -112494891 + L1MB7 LINE L1 5386 6175 -9 4459 166 59 34 chr9 5369157 5370460 -112492167 - L1MB3 LINE L1 -3 6180 4848 1171 171 9 57 chr9 5371433 5371661 -112490966 - AluJo SINE Alu -95 217 1 2237 111 0 3 chr9 5371894 5372201 -112490426 - AluSg SINE Alu -4 306 1 2100 163 3 9 chr9 5373438 5373787 -112488840 - MER7A DNA MER2_type 0 346 2 1573 164 95 0 chr9 5374069 5374331 -112488296 - AluJo SINE Alu -25 287 1 1220 175 69 0 chr9 5374696 5374913 -112487714 - MER46A DNA MER2_type -3 233 2 323 369 6 18 chr9 5375143 5375311 -112487316 + MER5A DNA MER1_type 2 167 -22 * 507 271 7 21 chr9 5375175 5375319 -112487308 - MER5A DNA MER1_type -22 167 26 278 208 0 0 chr9 5375741 5375789 -112486838 - L2 LINE L2 0 3313 3266 4220 186 37 13 chr9 5376233 5377284 -112485343 - L1MB7 LINE L1 -1 6183 5110 457 305 140 5 chr9 5377296 5377496 -112485131 - L2 LINE L2 -1391 1923 1697 302 320 47 62 chr9 5380341 5380469 -112482158 + L2 LINE L2 3146 3271 -1 335 304 49 10 chr9 5380611 5380713 -112481914 - MIR SINE MIR -139 123 18 4662 160 44 21 chr9 5381137 5381337 -112481290 - L1MB2 LINE L1 -2 6169 5975 2210 109 7 3 chr9 5381337 5381641 -112480986 - AluSg SINE Alu -5 305 1 4662 160 44 21 chr9 5381641 5381968 -112480659 - L1MB2 LINE L1 -196 5975 5657 1835 137 64 20 chr9 5381968 5382325 -112480302 - THE1C LTR MaLR -2 373 1 4662 160 44 21 chr9 5382325 5382828 -112479799 - L1MB2 LINE L1 -514 5657 5121 2625 251 56 18 chr9 5382834 5383693 -112478934 - L1ME3 LINE L1 -8 6154 5263 14718 126 31 16 chr9 5383726 5385838 -112476789 - Tigger1 DNA MER2_type -1 2417 265 1411 205 0 0 chr9 5385838 5386077 -112476550 - MER8 DNA MER2_type 0 239 1 14718 126 31 16 chr9 5386077 5386346 -112476281 - Tigger1 DNA MER2_type -2153 265 1 447 278 124 36 chr9 5386374 5386680 -112475947 - L1MC/D LINE L1 -2179 5629 5297 451 262 78 85 chr9 5386859 5387332 -112475295 - HAL1 LINE L1 -327 2180 1711 2165 101 0 0 chr9 5387636 5387912 -112474715 + AluSg SINE Alu 1 276 -34 1999 141 14 0 chr9 5388016 5388313 -112474314 + AluSx SINE Alu 9 309 -3 1104 174 47 0 chr9 5389226 5389416 -112473211 + MER3 DNA MER1_type 2 200 -9 214 409 64 0 chr9 5389794 5389904 -112472723 - L2 LINE L2 0 3272 3156 30 0 0 0 chr9 5390729 5390759 -112471868 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 5391233 5391256 -112471371 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 5391410 5391435 -112471192 + AT_rich Low_complexity Low_complexity 1 25 0 2329 92 0 25 chr9 5391632 5391949 -112470678 + AluSc SINE Alu 1 309 0 21 57 0 0 chr9 5392112 5392147 -112470480 + AT_rich Low_complexity Low_complexity 1 35 0 393 349 54 46 chr9 5392212 5392529 -112470098 - L2 LINE L2 -219 3053 2735 315 233 17 0 chr9 5394103 5394163 -112468464 + L1MEd LINE L1 112 172 -5947 664 217 119 7 chr9 5394170 5394313 -112468314 + MER8 DNA MER2_type 1 159 -80 41 21 0 0 chr9 5394314 5394362 -112468265 + AT_rich Low_complexity Low_complexity 1 48 0 482 129 0 0 chr9 5394471 5394541 -112468086 - Tigger2 DNA MER2_type -2648 70 1 1623 282 74 33 chr9 5394602 5395485 -112467142 + L1MEd LINE L1 238 1156 -4963 419 305 0 0 chr9 5395533 5395638 -112466989 - MIR SINE MIR -146 116 12 740 271 78 29 chr9 5395673 5395917 -112466710 - MIR SINE MIR 0 262 7 13936 129 39 30 chr9 5398043 5400439 -112462188 + Tigger1 DNA MER2_type 1 2417 -1 24 53 0 0 chr9 5400682 5400720 -112461907 + AT_rich Low_complexity Low_complexity 1 38 0 32 43 0 0 chr9 5400959 5401005 -112461622 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 5401144 5401176 -112461451 + AT_rich Low_complexity Low_complexity 1 32 0 734 198 21 88 chr9 5403397 5403589 -112459038 + AluJb SINE Alu 114 292 -20 431 320 47 13 chr9 5403650 5403830 -112458797 + MIR3 SINE MIR 1 185 -23 2662 46 0 0 chr9 5404648 5404955 -112457672 - AluY SINE Alu -4 307 1 449 189 72 46 chr9 5405746 5405796 -112456831 + MER103 DNA DNA 10 57 -109 3651 194 58 53 chr9 5405796 5406760 -112455867 - LTR5 LTR ERVK 0 969 1 449 189 72 46 chr9 5406760 5406862 -112455765 + MER103 DNA DNA 57 166 0 266 171 260 14 chr9 5407660 5407806 -112454821 - L1ME4a LINE L1 -202 5919 5738 21 0 0 0 chr9 5408243 5408264 -112454363 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr9 5408293 5408323 -112454304 + AT_rich Low_complexity Low_complexity 1 30 0 299 53 0 0 chr9 5409827 5409865 -112452762 - THE1-int LTR MaLR -125 1455 1418 26 0 0 0 chr9 5409879 5409905 -112452722 + GC_rich Low_complexity Low_complexity 1 26 0 2183 101 70 20 chr9 5410878 5411235 -112451392 - THE1C LTR MaLR 0 375 1 348 279 117 33 chr9 5411375 5411615 -112451012 + L1ME LINE L1 5449 5708 -413 22 0 0 0 chr9 5411697 5411719 -112450908 + AT_rich Low_complexity Low_complexity 1 22 0 412 323 57 6 chr9 5411834 5411992 -112450635 - MIR SINE MIR -79 183 18 1527 214 24 40 chr9 5412349 5412727 -112449900 - MLT1A2 LTR MaLR -2 372 1 2474 84 0 0 chr9 5413018 5413326 -112449301 + AluY SINE Alu 2 309 -2 22 0 0 0 chr9 5413359 5413381 -112449246 + AT_rich Low_complexity Low_complexity 1 22 0 2335 70 0 10 chr9 5422458 5422756 -112439871 - AluY SINE Alu -16 295 1 22 35 0 0 chr9 5423239 5423268 -112439359 + AT_rich Low_complexity Low_complexity 1 29 0 34787 90 17 12 chr9 5424676 5430796 -112431831 + L1PA6 LINE L1 12 6146 -8 252 0 0 0 chr9 5436952 5436980 -112425647 + (T)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr9 5437185 5437210 -112425417 + (A)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr9 5438693 5438718 -112423909 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6795 66 9 6 chr9 5438718 5439835 -112422792 + L1PA7 LINE L1 5030 6154 0 702 275 140 5 chr9 5439840 5440047 -112422580 - MIR SINE MIR -10 252 18 21 36 0 0 chr9 5440110 5440138 -112422489 + AT_rich Low_complexity Low_complexity 1 28 0 222 310 0 0 chr9 5440398 5440456 -112422171 - L2 LINE L2 -12 3301 3244 794 146 19 149 chr9 5440750 5441018 -112421609 + MLT1A1 LTR MaLR 116 348 -17 238 280 75 11 chr9 5441074 5441164 -112421463 - L2 LINE L2 -548 2766 2671 458 177 308 0 chr9 5441164 5441294 -112421333 + Charlie1 DNA MER1_type 1 170 -2591 * 1348 171 58 3 chr9 5441291 5441583 -112421044 + Charlie1 DNA MER1_type 2454 2761 0 3129 192 97 142 chr9 5441656 5441856 -112420771 - Charlie2a DNA MER1_type 0 2862 2655 556 88 0 0 chr9 5441856 5441936 -112420691 + Alu SINE Alu 217 296 -15 3129 192 97 142 chr9 5441936 5443742 -112418885 - Charlie2a DNA MER1_type -207 2655 871 1258 184 37 110 chr9 5443742 5444116 -112418511 - MLT1A1 LTR MaLR 0 365 19 242 248 192 35 chr9 5444134 5444332 -112418295 - Charlie2a DNA MER1_type -1993 869 641 338 342 167 30 chr9 5444499 5444880 -112417747 - L2 LINE L2 -773 2541 2077 3553 138 60 18 chr9 5444880 5445561 -112417066 - MER67C LTR ERV1 0 710 1 338 342 167 30 chr9 5445561 5445670 -112416957 - L2 LINE L2 -1237 2077 1984 736 202 8 0 chr9 5446325 5446449 -112416178 - MER68 LTR ERV1 0 562 438 * 1257 166 85 0 chr9 5446446 5446669 -112415958 - MER68 LTR ERV1 -320 242 1 2049 183 28 5 chr9 5446913 5446924 -112415703 - L1M4 LINE L1 -695 5489 5480 3935 161 25 4 chr9 5446924 5447650 -112414977 - L1PB4 LINE L1 -3 6153 5413 2049 183 28 5 chr9 5447650 5448235 -112414392 - L1M4 LINE L1 -704 5480 4887 1868 146 3 6 chr9 5448233 5448562 -112414065 + L1M4 LINE L1 4556 4883 -1263 * 672 265 108 79 chr9 5448869 5449630 -112412997 - L1ME4a LINE L1 -74 6047 5258 369 0 0 0 chr9 5451841 5451882 -112410745 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 86 0 0 chr9 5453634 5453692 -112408935 + AT_rich Low_complexity Low_complexity 1 58 0 2610 42 0 3 chr9 5454480 5454789 -112407838 - AluY SINE Alu -3 308 1 2396 79 0 7 chr9 5455196 5455500 -112407127 - AluSq SINE Alu -11 302 1 495 189 175 63 chr9 5456812 5457018 -112405609 + MER106A DNA MER1_type 7 235 -1 11370 124 20 18 chr9 5457194 5459118 -112403509 + L1PA7 LINE L1 1383 4098 -3486 18397 79 10 1 chr9 5459120 5462500 -112400127 + L1PA7 LINE L1 4161 7588 -4 21 0 0 0 chr9 5462664 5462685 -112399942 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5462803 5462825 -112399802 + AT_rich Low_complexity Low_complexity 1 22 0 312 188 111 68 chr9 5462944 5463061 -112399566 - L1M4 LINE L1 -689 5485 5364 312 308 42 30 chr9 5463389 5463569 -112399058 - MIR3 SINE MIR -23 185 1 284 330 93 22 chr9 5464227 5464409 -112398218 + L2 LINE L2 2590 2784 -530 20541 180 39 14 chr9 5464476 5467424 -112395203 - L1PA13 LINE L1 -2 6812 3941 2228 107 0 0 chr9 5467424 5467714 -112394913 - AluSx SINE Alu -16 296 7 20541 180 39 14 chr9 5467714 5470883 -112391744 - L1PA13 LINE L1 -2873 3941 384 2832 120 5 2 chr9 5470910 5471318 -112391309 - L1PA12 LINE L1 -5579 2002 1594 2512 260 60 7 chr9 5471330 5472103 -112390524 - L1PA12 LINE L1 -4509 3072 2259 348 202 36 12 chr9 5472405 5472489 -112390138 - L1PA12 LINE L1 -5412 2169 2084 718 327 148 26 chr9 5472743 5473162 -112389465 - L1PA12 LINE L1 -6317 1257 788 4529 184 50 11 chr9 5473186 5474607 -112388020 + L1PB4 LINE L1 4321 5809 -347 315 0 0 0 chr9 5474607 5474642 -112387985 + (CA)n Simple_repeat Simple_repeat 2 36 0 4529 184 50 11 chr9 5474642 5474992 -112387635 + L1PB4 LINE L1 5809 6144 -12 281 239 71 9 chr9 5474998 5475111 -112387516 + HsTC2 DNA Tc2 251 370 -1528 1688 233 118 31 chr9 5475167 5476507 -112386120 + L1MEc LINE L1 1850 3290 -2925 4851 129 16 0 chr9 5476509 5477244 -112385383 + L1P3 LINE L1 2 748 -5713 9415 62 1 1 chr9 5477244 5479248 -112383379 + L1PA4 LINE L1 4145 6155 0 3047 52 0 5 chr9 5479306 5479694 -112382933 + L1PA7 LINE L1 5769 6154 0 2409 215 178 96 chr9 5479694 5480679 -112381948 + L1MEc LINE L1 3281 4183 -2032 737 142 17 0 chr9 5480679 5480799 -112381828 + AluSg/x SINE Alu 185 306 -6 2409 215 178 96 chr9 5480799 5481406 -112381221 + L1MEc LINE L1 4183 5133 -1082 9899 162 25 27 chr9 5481414 5483650 -112378977 + L1M1 LINE L1 1931 4166 -3399 2234 101 0 13 chr9 5483650 5483957 -112378670 + AluSq SINE Alu 1 303 -10 9899 162 25 27 chr9 5483957 5485581 -112377046 + L1M1 LINE L1 4166 5792 -1773 1589 141 42 15 chr9 5485582 5485845 -112376782 + AluJo SINE Alu 25 294 -18 978 188 11 21 chr9 5486839 5487025 -112375602 - MER5A DNA MER1_type -1 188 5 4165 173 58 13 chr9 5488248 5488686 -112373941 - L1MB7 LINE L1 -20 6164 5747 2126 122 0 10 chr9 5488686 5488990 -112373637 + AluSx SINE Alu 1 301 -11 4165 173 58 13 chr9 5488990 5489385 -112373242 - L1MB7 LINE L1 -437 5747 5294 212 0 36 0 chr9 5489962 5489990 -112372637 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 457 291 138 9 chr9 5490166 5490602 -112372025 + L1 LINE L1 3196 3687 -2459 21494 169 44 24 chr9 5490714 5492688 -112369939 + L1PA10 LINE L1 1 1933 -4550 2116 121 3 3 chr9 5492688 5492985 -112369642 - AluSq SINE Alu -15 298 2 21494 169 44 24 chr9 5492985 5496407 -112366220 + L1PA10 LINE L1 1933 5661 -822 2228 118 3 0 chr9 5496407 5496704 -112365923 + AluSx SINE Alu 1 298 -14 21494 169 44 24 chr9 5496704 5497545 -112365082 + L1PA10 LINE L1 5661 6483 0 4023 253 117 49 chr9 5497632 5498700 -112363927 + L2 LINE L2 1361 2355 -958 2403 73 0 3 chr9 5498700 5499000 -112363627 - AluY SINE Alu -12 299 1 4023 253 117 49 chr9 5499000 5499280 -112363347 + L2 LINE L2 2355 2614 -699 3612 123 13 8 chr9 5499280 5499802 -112362825 + MER1A DNA MER1_type 3 527 0 4023 253 117 49 chr9 5499802 5500278 -112362349 + L2 LINE L2 2614 3312 -1 244 303 40 0 chr9 5500373 5500472 -112362155 + L1 LINE L1 3987 4089 -2057 331 226 99 23 chr9 5500540 5500761 -112361866 + L1 LINE L1 4231 4468 -1678 3533 226 62 51 chr9 5500847 5501626 -112361001 + L1PA12 LINE L1 4 802 -6779 2230 127 3 0 chr9 5501626 5501933 -112360694 - AluSx SINE Alu -2 310 3 3533 226 62 51 chr9 5501933 5502339 -112360288 + L1PA12 LINE L1 802 1202 -6379 6383 79 34 0 chr9 5502343 5503779 -112358848 + L1PA11 LINE L1 4716 6174 0 5784 50 143 60 chr9 5503813 5504885 -112357742 + MER11A LTR ERVK 1 1266 0 342 324 115 61 chr9 5504887 5505329 -112357298 + L1ME3A LINE L1 4581 5046 -1100 568 325 99 11 chr9 5505474 5506024 -112356603 + L1ME3A LINE L1 5256 5847 -323 466 259 114 6 chr9 5506194 5506352 -112356275 + L2 LINE L2 3135 3309 -4 25 0 0 0 chr9 5506977 5507002 -112355625 + AT_rich Low_complexity Low_complexity 1 25 0 474 247 213 7 chr9 5507577 5507727 -112354900 + MER5A DNA MER1_type 9 189 0 197 167 24 0 chr9 5507906 5507948 -112354679 - L2 LINE L2 0 3313 3271 394 181 26 60 chr9 5508552 5508668 -112353959 + MER45 DNA AcHobo 1463 1574 -7 300 313 134 18 chr9 5508729 5508841 -112353786 - L2 LINE L2 -206 3066 2942 190 278 28 28 chr9 5509880 5509952 -112352675 + L2 LINE L2 3161 3232 -40 880 214 54 17 chr9 5510749 5511043 -112351584 + L1M1 LINE L1 3358 3662 -3903 2239 219 33 10 chr9 5511049 5511377 -112351250 + L1M1 LINE L1 4027 4377 -3188 2099 122 0 3 chr9 5511377 5511665 -112350962 + AluSx SINE Alu 1 287 -25 2239 219 33 10 chr9 5511665 5511943 -112350684 + L1M1 LINE L1 4377 4647 -2918 1882 255 49 89 chr9 5511938 5512964 -112349663 - L1P3 LINE L1 -5467 994 10 * 352 58 0 39 chr9 5513095 5513147 -112349480 + THE1B LTR MaLR 1 50 -314 530 306 100 24 chr9 5513718 5514279 -112348348 + L2 LINE L2 2503 3174 -139 269 279 101 62 chr9 5515490 5515669 -112346958 - MER5A DNA MER1_type 0 189 4 234 190 69 0 chr9 5516262 5516320 -112346307 - MIR SINE MIR -98 110 49 348 182 164 0 chr9 5516393 5516503 -112346124 - MER112 DNA MER1_type -62 198 71 365 88 206 15 chr9 5517001 5517069 -112345558 + AluS SINE Alu 4 84 -218 447 287 89 3 chr9 5518644 5518926 -112343701 - L1ME4a LINE L1 -267 5854 5549 733 154 0 8 chr9 5519222 5519352 -112343275 - FLAM_C SINE Alu -8 135 7 2391 80 30 0 chr9 5519393 5519695 -112342932 - AluSx SINE Alu -1 311 1 38 39 0 0 chr9 5520372 5520424 -112342203 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5520707 5520728 -112341899 + AT_rich Low_complexity Low_complexity 1 21 0 317 239 0 14 chr9 5520829 5520900 -112341727 + L2 LINE L2 3244 3313 0 310 260 273 9 chr9 5520900 5521127 -112341500 + L1ME4a LINE L1 5712 5998 -123 869 188 16 36 chr9 5521145 5521337 -112341290 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5521394 5521437 -112341190 + AT_rich Low_complexity Low_complexity 1 43 0 437 294 105 57 chr9 5521899 5522423 -112340204 - L1MC/D LINE L1 -2005 5803 5255 416 304 24 16 chr9 5522618 5522743 -112339884 + L2 LINE L2 3183 3308 -5 182 61 0 30 chr9 5524913 5524946 -112337681 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 271 268 143 62 chr9 5525607 5525816 -112336811 - L3 LINE CR1 -7 1570 1345 581 223 4 128 chr9 5527260 5527525 -112335102 + L2 LINE L2 3082 3313 0 263 319 11 21 chr9 5527721 5527815 -112334812 - MIR SINE MIR -24 238 146 671 253 13 13 chr9 5527901 5528051 -112334576 - MIR SINE MIR -111 151 2 240 269 86 6 chr9 5528154 5528264 -112334363 - Charlie7 DNA MER1_type -4 2608 2477 336 200 0 12 chr9 5528264 5528344 -112334283 - MER116 DNA Mariner -1 79 1 240 269 86 6 chr9 5528344 5528408 -112334219 - Charlie7 DNA MER1_type -135 2477 2420 918 223 137 15 chr9 5528412 5528749 -112333878 - Charlie7 DNA MER1_type -1900 712 335 1062 186 45 4 chr9 5529272 5529527 -112333100 + L1MC3 LINE L1 6196 6357 -2 493 96 0 24 chr9 5529856 5529939 -112332688 - L1PB4 LINE L1 -8 6148 6068 300 263 79 0 chr9 5530529 5530605 -112332022 + L2 LINE L2 3191 3272 0 192 384 40 0 chr9 5530684 5530783 -112331844 - L2 LINE L2 -7 3265 3163 381 239 123 29 chr9 5531082 5531220 -112331407 + MIR SINE MIR 80 230 -32 384 232 35 84 chr9 5531623 5531765 -112330862 + MIR SINE MIR 72 206 -56 2268 117 0 0 chr9 5532183 5532482 -112330145 + AluSx SINE Alu 1 299 -13 246 327 58 10 chr9 5532608 5532712 -112329915 - MIR SINE MIR -153 109 1 351 275 59 82 chr9 5534498 5534581 -112328046 - MIR SINE MIR -27 235 152 225 0 0 0 chr9 5534581 5534606 -112328021 + (GA)n Simple_repeat Simple_repeat 2 26 0 351 275 59 82 chr9 5534606 5534770 -112327857 - MIR SINE MIR -110 152 2 276 188 0 0 chr9 5535004 5535052 -112327575 + MER81 DNA DNA 3 50 -64 369 279 121 7 chr9 5536043 5536183 -112326444 - MIR SINE MIR -58 204 49 486 326 56 25 chr9 5536228 5536424 -112326203 - L2 LINE L2 0 3272 3071 24 32 0 0 chr9 5537829 5537860 -112324767 + AT_rich Low_complexity Low_complexity 1 31 0 2231 110 3 0 chr9 5538568 5538868 -112323759 - AluSq SINE Alu -12 301 1 23 33 0 0 chr9 5539149 5539179 -112323448 + AT_rich Low_complexity Low_complexity 1 30 0 25451 60 3 4 chr9 5539193 5545345 -112317282 - L1PA5 LINE L1 -2 6152 3 3580 125 8 43 chr9 5545357 5545549 -112317078 - L1MA6 LINE L1 -22 6278 6081 2110 138 50 56 chr9 5545549 5545926 -112316701 - THE1C LTR MaLR 0 375 1 3580 125 8 43 chr9 5545926 5546228 -112316399 - L1MA6 LINE L1 -219 6081 5770 405 0 0 0 chr9 5546228 5546273 -112316354 + (TG)n Simple_repeat Simple_repeat 2 46 0 3580 125 8 43 chr9 5546273 5546288 -112316339 - L1MA6 LINE L1 -530 5770 5756 710 153 89 24 chr9 5546288 5546412 -112316215 - FLAM_A SINE Alu -1 132 1 3580 125 8 43 chr9 5546412 5546525 -112316102 - L1MA6 LINE L1 -544 5756 5676 205 106 21 21 chr9 5546531 5546578 -112316049 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 45 45 0 0 chr9 5547286 5547352 -112315275 + AT_rich Low_complexity Low_complexity 1 66 0 195 238 188 38 chr9 5547858 5547938 -112314689 - L2 LINE L2 -12 3260 3169 874 281 42 4 chr9 5548280 5548518 -112314109 - MIR SINE MIR -13 249 3 1883 249 55 21 chr9 5548679 5549582 -112313045 - L1ME LINE L1 -438 5724 4787 1930 154 0 0 chr9 5549803 5550101 -112312526 + AluJb SINE Alu 1 298 -14 1390 112 0 39 chr9 5550307 5550513 -112312114 - AluSg/x SINE Alu -10 300 103 361 268 48 26 chr9 5551333 5551539 -112311088 - MLT1L LTR MaLR -363 252 5 194 311 98 59 chr9 5551556 5551810 -112310817 + L2 LINE L2 2603 2866 -448 332 176 0 0 chr9 5551824 5551875 -112310752 - MER58A DNA MER1_type -33 191 141 699 77 30 179 chr9 5551894 5551992 -112310635 + Tigger7 DNA MER2_type 2232 2296 -195 861 137 23 8 chr9 5551992 5552123 -112310504 - FLAM_C SINE Alu 0 133 1 699 77 30 179 chr9 5552123 5552192 -112310435 + Tigger7 DNA MER2_type 2296 2374 -117 814 123 0 16 chr9 5552275 5552397 -112310230 + Tigger7 DNA MER2_type 2368 2487 0 675 248 14 0 chr9 5552397 5552538 -112310089 - MER58A DNA MER1_type 0 143 1 690 296 94 14 chr9 5553213 5553436 -112309191 + MIR SINE MIR 15 255 -7 1083 267 49 21 chr9 5553525 5553813 -112308814 - MLT1J1 LTR MaLR -128 318 23 667 321 109 44 chr9 5554202 5554726 -112307901 - L2 LINE L2 0 3313 2728 2368 97 0 0 chr9 5554726 5555035 -112307592 - AluSc SINE Alu 0 309 1 667 321 109 44 chr9 5555035 5555182 -112307445 - L2 LINE L2 -585 2728 2592 841 285 34 4 chr9 5556898 5557133 -112305494 + MIR SINE MIR 8 249 -13 548 235 53 82 chr9 5557997 5558240 -112304387 + L1ME4a LINE L1 5631 5866 -255 466 17 0 34 chr9 5558301 5558360 -112304267 + AluY SINE Alu 242 298 -13 1845 51 0 0 chr9 5558364 5558578 -112304049 + L1PA5 LINE L1 5933 6146 -8 22 0 0 0 chr9 5558578 5558600 -112304027 + AT_rich Low_complexity Low_complexity 1 22 0 815 272 40 36 chr9 5558934 5559184 -112303443 - MIR SINE MIR -4 258 8 260 200 0 20 chr9 5559364 5559414 -112303213 + MIR SINE MIR 101 149 -59 331 273 147 47 chr9 5559624 5559774 -112302853 + L2 LINE L2 3106 3270 -2 2140 130 19 3 chr9 5560028 5560335 -112302292 - AluJb SINE Alu 0 312 1 348 267 147 47 chr9 5560555 5560705 -112301922 - L2 LINE L2 -2 3270 3106 517 291 32 6 chr9 5561000 5561158 -112301469 - MER5B DNA MER1_type -16 162 1 7801 45 7 0 chr9 5561999 5563334 -112299293 - L1PA4 LINE L1 0 6155 4817 2871 165 49 27 chr9 5563518 5563574 -112299053 - L1MB8 LINE L1 0 6178 6125 2241 147 6 32 chr9 5563574 5563920 -112298707 + MER1B DNA MER1_type 1 337 0 2871 165 49 27 chr9 5563920 5564450 -112298177 - L1MB8 LINE L1 -53 6125 5579 211 194 0 0 chr9 5565024 5565060 -112297567 + CT-rich Low_complexity Low_complexity 5 40 0 1025 181 0 0 chr9 5565155 5565321 -112297306 - FRAM SINE Alu -11 165 1 1444 114 14 5 chr9 5565332 5565552 -112297075 - L1MA5 LINE L1 -5 6295 6074 2320 91 0 3 chr9 5566048 5566346 -112296281 - AluSx SINE Alu -15 297 1 286 235 12 35 chr9 5566629 5566714 -112295913 - MIR SINE MIR -7 255 173 310 193 12 12 chr9 5566715 5566798 -112295829 + (CATTA)n Simple_repeat Simple_repeat 2 84 0 229 369 0 0 chr9 5566850 5566934 -112295693 + MIR SINE MIR 61 144 -118 549 176 0 0 chr9 5567155 5567240 -112295387 + AluJb SINE Alu 1 85 -227 2208 110 0 3 chr9 5567240 5567541 -112295086 - LTR46 LTR ERV1 0 460 161 1963 162 48 14 chr9 5567544 5567902 -112294725 - LTR46-int LTR ERV1 -3 6982 6613 2765 88 0 1 chr9 5568018 5568426 -112294201 + LTR46 LTR ERV1 1 460 0 1293 186 0 4 chr9 5568428 5568654 -112293973 + AluJb SINE Alu 83 307 -5 19688 175 24 19 chr9 5568855 5574892 -112287735 + L1PA12 LINE L1 1 6115 -704 2351 82 0 3 chr9 5574892 5575185 -112287442 + AluY SINE Alu 1 292 -19 19688 175 24 19 chr9 5575185 5575839 -112286788 + L1PA12 LINE L1 6115 6764 -55 227 200 0 0 chr9 5576269 5576309 -112286318 - MLT1K LTR MaLR -359 229 190 183 308 223 0 chr9 5576792 5576922 -112285705 + MIR SINE MIR 34 192 -70 999 208 98 4 chr9 5576946 5577191 -112285436 + MLT1C LTR MaLR 9 276 -191 2540 161 9 0 chr9 5577391 5577826 -112284801 + L1P LINE L1 3951 4389 -1757 269 173 19 0 chr9 5579024 5579076 -112283551 + L3 LINE CR1 1518 1570 -7 328 308 38 53 chr9 5579219 5579352 -112283275 + L2 LINE L2 3142 3272 0 253 349 77 12 chr9 5580583 5580752 -112281875 + L2 LINE L2 2872 3051 -221 227 263 18 0 chr9 5581144 5581201 -112281426 - Charlie8 DNA MER1_type -1010 1407 1350 283 278 151 56 chr9 5581545 5581671 -112280956 + L2 LINE L2 3134 3271 -1 967 162 5 89 chr9 5581973 5582164 -112280463 + FAM SINE Alu 1 175 0 257 269 26 13 chr9 5582262 5582340 -112280287 - L2 LINE L2 -209 3063 2985 4666 190 99 30 chr9 5582754 5583021 -112279606 - MER52A LTR ERV1 -518 1237 990 2338 97 3 3 chr9 5583021 5583331 -112279296 + AluSg SINE Alu 1 310 0 4666 190 99 30 chr9 5583331 5583421 -112279206 - MER52A LTR ERV1 -765 990 908 2298 91 10 3 chr9 5583421 5583729 -112278898 - AluSq SINE Alu -3 310 1 4666 190 99 30 chr9 5583729 5584444 -112278183 - MER52A LTR ERV1 -847 908 1 353 100 20 0 chr9 5584446 5584496 -112278131 + AluJ/FRAM SINE Alu 225 275 -27 582 314 91 19 chr9 5584634 5584898 -112277729 - MER115 DNA AcHobo -390 303 21 1337 246 87 27 chr9 5584900 5585303 -112277324 - L2 LINE L2 -519 2795 2369 358 345 54 14 chr9 5585472 5585620 -112277007 - MIR SINE MIR -96 166 13 1616 261 183 30 chr9 5586007 5586301 -112276326 + L2 LINE L2 1673 1921 -1393 3291 149 29 23 chr9 5586301 5586856 -112275771 - MER74A LTR ERVL 0 558 1 1616 261 183 30 chr9 5586856 5587304 -112275323 + L2 LINE L2 1921 2529 -785 2571 197 8 126 chr9 5587304 5588177 -112274450 + L1MB7 LINE L1 4481 5250 -896 * 3377 161 7 11 chr9 5588168 5588738 -112273889 + L1MB7 LINE L1 5567 6134 -50 228 187 0 93 chr9 5588745 5588820 -112273807 + L1MA10 LINE L1 6263 6330 -4 27 49 0 0 chr9 5588820 5588861 -112273766 + AT_rich Low_complexity Low_complexity 1 41 0 386 262 91 77 chr9 5588871 5589092 -112273535 + L2 LINE L2 2548 2771 -543 543 264 167 17 chr9 5591438 5591612 -112271015 - MIR SINE MIR -11 251 52 28 29 0 0 chr9 5592163 5592198 -112270429 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 5592418 5592440 -112270187 + AT_rich Low_complexity Low_complexity 1 22 0 2103 119 16 7 chr9 5592445 5592748 -112269879 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr9 5592881 5592903 -112269724 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr9 5593021 5593046 -112269581 + AT_rich Low_complexity Low_complexity 1 25 0 2337 84 0 0 chr9 5593146 5593443 -112269184 + AluSg SINE Alu 1 297 -13 25 31 0 0 chr9 5593567 5593599 -112269028 + AT_rich Low_complexity Low_complexity 1 32 0 252 175 53 18 chr9 5593680 5593737 -112268890 - L1ME3A LINE L1 -95 6075 6017 1597 188 10 10 chr9 5593829 5594117 -112268510 - AluJo SINE Alu -24 288 1 252 219 146 57 chr9 5594203 5594326 -112268301 - L1ME3A LINE L1 -268 5853 5720 2699 196 69 13 chr9 5594549 5594670 -112267957 - L1ME1 LINE L1 -187 5979 5866 180 0 0 0 chr9 5594670 5594690 -112267937 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2699 196 69 13 chr9 5594690 5595200 -112267427 - L1ME1 LINE L1 -300 5866 5458 2186 123 0 3 chr9 5595200 5595509 -112267118 - AluSx SINE Alu -4 308 1 2699 196 69 13 chr9 5595509 5595608 -112267019 - L1ME1 LINE L1 -708 5458 5366 221 58 77 0 chr9 5595616 5595668 -112266959 + (TA)n Simple_repeat Simple_repeat 1 56 0 1836 167 3 13 chr9 5595684 5595984 -112266643 - AluJo SINE Alu -15 297 1 2161 190 40 77 chr9 5595993 5596126 -112266501 - L1ME1 LINE L1 -757 5389 5253 1694 157 25 0 chr9 5596126 5596400 -112266227 - AluSx SINE Alu -23 289 9 2161 190 40 77 chr9 5596400 5596913 -112265714 - L1ME1 LINE L1 -893 5253 4767 671 268 93 0 chr9 5597966 5598160 -112264467 + MIR SINE MIR 49 260 -2 411 224 299 0 chr9 5598209 5598343 -112264284 - MER5A DNA MER1_type -6 183 10 510 277 40 40 chr9 5598394 5598571 -112264056 - MER5B DNA MER1_type -1 177 1 215 308 192 42 chr9 5599890 5600010 -112262617 - L2 LINE L2 -2 3270 3133 581 316 66 20 chr9 5600196 5600440 -112262187 - MIR SINE MIR -6 256 2 233 73 0 24 chr9 5600490 5600531 -112262096 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 985 251 112 27 chr9 5600729 5601103 -112261524 + MER113 DNA MER1_type? 116 521 0 302 304 143 54 chr9 5601103 5601327 -112261300 + MIR SINE MIR 13 256 -6 555 240 85 25 chr9 5601393 5601593 -112261034 + MIR SINE MIR 51 262 0 532 246 41 86 chr9 5602797 5603065 -112259562 - MER112 DNA MER1_type 0 256 1 248 290 0 0 chr9 5603066 5603135 -112259492 - MIR3 SINE MIR -49 159 91 518 308 12 12 chr9 5603546 5603715 -112258912 + MIR SINE MIR 89 257 -5 804 273 144 11 chr9 5604117 5604395 -112258232 + Charlie2 DNA MER1_type 4 318 -2544 2214 210 101 30 chr9 5604407 5604857 -112257770 + Charlie2 DNA MER1_type 1871 2388 -474 3527 39 17 0 chr9 5604857 5605263 -112257364 + L1PA4 LINE L1 5743 6155 0 2214 210 101 30 chr9 5605263 5605503 -112257124 + Charlie2 DNA MER1_type 2388 2610 -252 2521 52 0 10 chr9 5605781 5606091 -112256536 + AluY SINE Alu 1 307 -4 1264 101 48 0 chr9 5606220 5606408 -112256219 - L1MA5A LINE L1 -3 6294 6098 419 265 70 22 chr9 5606412 5606642 -112255985 + Charlie2 DNA MER1_type 2606 2846 -16 12851 165 27 18 chr9 5607231 5610633 -112251994 + L1PB1 LINE L1 2598 6032 -119 2500 69 0 0 chr9 5610635 5610938 -112251689 + AluY SINE Alu 1 303 -8 22 56 0 0 chr9 5611186 5611222 -112251405 + AT_rich Low_complexity Low_complexity 1 36 0 255 308 59 18 chr9 5611312 5611481 -112251146 + L3 LINE CR1 270 445 -1132 1192 266 110 17 chr9 5611512 5611985 -112250642 - LTR33A LTR ERVL -5 518 2 209 285 76 101 chr9 5612008 5612166 -112250461 + L3 LINE CR1 473 626 -951 411 358 55 5 chr9 5612261 5612479 -112250148 + L3 LINE CR1 1044 1272 -305 288 275 290 15 chr9 5612482 5612682 -112249945 - MIR SINE MIR 0 262 8 308 312 7 78 chr9 5612714 5612868 -112249759 + L3 LINE CR1 1326 1468 -109 1157 208 60 18 chr9 5612894 5613230 -112249397 + L1M4 LINE L1 2368 2717 -3429 229 233 50 0 chr9 5614566 5614626 -112248001 - L1ME LINE L1 -536 5585 5523 3360 154 64 43 chr9 5614947 5615032 -112247595 - L1MA7 LINE L1 -1 6290 6208 2327 103 7 3 chr9 5615032 5615342 -112247285 + AluSq SINE Alu 1 311 -2 3360 154 64 43 chr9 5615342 5615976 -112246651 - L1MA7 LINE L1 -83 6208 5556 219 149 0 64 chr9 5616047 5616094 -112246533 + (TG)n Simple_repeat Simple_repeat 2 45 0 439 348 49 18 chr9 5616380 5616604 -112246023 + MIR SINE MIR 32 262 0 1714 236 113 11 chr9 5617009 5617480 -112245147 - LTR33 LTR ERVL -2 519 1 2122 199 44 58 chr9 5617788 5618077 -112244550 - MLT1D LTR MaLR -7 498 217 2235 109 3 0 chr9 5618077 5618370 -112244257 - AluSx SINE Alu -18 294 1 2122 199 44 58 chr9 5618370 5618582 -112244045 - MLT1D LTR MaLR -288 217 4 927 313 67 46 chr9 5619335 5619859 -112242768 - ERVL LTR ERVL -420 5344 4810 892 178 5 49 chr9 5620321 5620506 -112242121 + AluJo SINE Alu 123 299 -13 192 182 0 45 chr9 5621574 5621618 -112241009 + MIR SINE MIR 213 254 -8 591 286 45 15 chr9 5622166 5622365 -112240262 + MIR SINE MIR 13 217 -45 2218 108 0 7 chr9 5622510 5622806 -112239821 + AluSq SINE Alu 1 294 -19 650 261 153 47 chr9 5622878 5623304 -112239323 - MLT1J LTR MaLR -10 501 31 434 323 12 24 chr9 5623821 5623988 -112238639 + MIR3 SINE MIR 37 201 -7 247 298 0 0 chr9 5624555 5624612 -112238015 + polypurine Low_complexity Low_complexity 1 57 0 216 67 0 0 chr9 5624629 5624659 -112237968 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 879 264 65 0 chr9 5624676 5624892 -112237735 + MIR SINE MIR 13 242 -20 257 340 11 0 chr9 5626159 5626253 -112236374 + GA-rich Low_complexity Low_complexity 2 96 0 264 357 37 1 chr9 5626827 5626955 -112235672 + MIR SINE MIR 17 148 -60 357 364 137 25 chr9 5626993 5627431 -112235196 + L2 LINE L2 2564 3055 -217 365 371 0 0 chr9 5628350 5628466 -112234161 + L2 LINE L2 3137 3252 -20 714 173 173 43 chr9 5628510 5628695 -112233932 - MER3 DNA MER1_type 0 209 1 356 270 162 14 chr9 5628697 5628874 -112233753 - MIR SINE MIR -48 214 16 185 143 57 0 chr9 5629073 5629108 -112233519 - MER5C DNA MER1_type 0 324 288 * 278 224 90 0 chr9 5629106 5629173 -112233454 - MER5C DNA MER1_type -249 75 3 3229 102 7 7 chr9 5629584 5630027 -112232600 + L1PB3 LINE L1 5712 6154 0 1989 151 16 6 chr9 5631113 5631430 -112231197 - MLT2C1 LTR ERVL -77 320 1 243 270 17 70 chr9 5632148 5632263 -112230364 + L2 LINE L2 2893 3001 -271 646 246 33 74 chr9 5632305 5632549 -112230078 - MIR SINE MIR -26 236 3 1872 150 10 14 chr9 5632568 5632861 -112229766 - AluJo SINE Alu -20 292 1 23 0 0 0 chr9 5633114 5633137 -112229490 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 5633170 5633207 -112229420 + AT_rich Low_complexity Low_complexity 1 37 0 26 64 0 0 chr9 5633288 5633335 -112229292 + AT_rich Low_complexity Low_complexity 1 47 0 1573 248 28 18 chr9 5633713 5634100 -112228527 + MLT1I LTR MaLR 11 401 -8 313 316 70 51 chr9 5634140 5634453 -112228174 + L1ME4a LINE L1 5803 6121 0 362 299 0 0 chr9 5634657 5634744 -112227883 - MIR SINE MIR -95 113 27 279 298 0 12 chr9 5634938 5635022 -112227605 - MIR3 SINE MIR -35 173 91 228 206 0 130 chr9 5635081 5635173 -112227454 - L2 LINE L2 0 3272 3193 2374 130 12 35 chr9 5635607 5635952 -112226675 + MER1B DNA MER1_type 1 337 0 1375 276 106 15 chr9 5636545 5637019 -112225608 - LTR33 LTR ERVL -4 517 1 212 250 0 18 chr9 5638217 5638273 -112224354 + MIR SINE MIR 102 156 -106 585 258 57 5 chr9 5639157 5639356 -112223271 - MIR SINE MIR -2 260 53 5277 55 40 5 chr9 5639471 5640124 -112222503 + L1PA8 LINE L1 5486 6161 -11 228 365 94 10 chr9 5640174 5640270 -112222357 + MIR SINE MIR 28 131 -131 2209 132 0 0 chr9 5640284 5640588 -112222039 + AluSx SINE Alu 1 304 -8 231 61 0 0 chr9 5640604 5640637 -112221990 + (TA)n Simple_repeat Simple_repeat 1 33 0 36 0 0 0 chr9 5640663 5640699 -112221928 + AT_rich Low_complexity Low_complexity 1 36 0 2202 121 0 19 chr9 5640701 5641015 -112221612 + AluSg SINE Alu 1 308 -2 2341 86 3 10 chr9 5641215 5641517 -112221110 - AluSp SINE Alu -13 300 1 2358 87 3 0 chr9 5641818 5642117 -112220510 + AluSp SINE Alu 1 300 -13 398 238 0 10 chr9 5642168 5642269 -112220358 - L1ME LINE L1 -298 5823 5724 1626 230 49 45 chr9 5642291 5642663 -112219964 + LTR33 LTR ERVL 1 377 -144 279 114 0 0 chr9 5642663 5642707 -112219920 + (CA)n Simple_repeat Simple_repeat 2 45 0 1626 230 49 45 chr9 5642707 5642826 -112219801 + LTR33 LTR ERVL 377 494 -27 373 290 20 0 chr9 5642869 5642969 -112219658 - L1ME LINE L1 -461 5660 5559 263 272 29 48 chr9 5643222 5643325 -112219302 + MIR SINE MIR 104 204 -58 1007 156 0 0 chr9 5643574 5643756 -112218871 - AluJb SINE Alu 0 323 142 2193 119 3 0 chr9 5643834 5644136 -112218491 - AluSp SINE Alu -10 303 1 642 235 138 113 chr9 5644596 5645030 -112217597 - MLT1H LTR MaLR 0 549 105 422 324 113 35 chr9 5645442 5645813 -112216814 - ERVL LTR ERVL -5067 697 298 415 249 79 42 chr9 5646259 5646424 -112216203 - LTR50 LTR ERVL -617 178 8 2341 71 0 0 chr9 5646653 5646984 -112215643 - AluY SINE Alu 0 333 3 682 301 160 33 chr9 5647023 5647449 -112215178 - MLT1K LTR MaLR -19 569 90 589 204 84 36 chr9 5647808 5647899 -112214728 - MIR SINE MIR -27 235 150 2560 107 120 5 chr9 5647899 5648283 -112214344 - MSTA LTR MaLR 0 428 1 589 204 84 36 chr9 5648283 5648358 -112214269 - MIR SINE MIR -112 150 61 266 346 58 6 chr9 5648430 5648586 -112214041 + L2 LINE L2 3146 3309 -4 4514 70 23 0 chr9 5649049 5649610 -112213017 + L1PA11 LINE L1 5596 6169 -5 1872 103 20 0 chr9 5651120 5651373 -112211254 + AluSx SINE Alu 34 291 -21 363 262 8 40 chr9 5651389 5651515 -112211112 - MIR SINE MIR -50 212 91 1996 164 0 0 chr9 5651552 5651851 -112210776 + AluJb SINE Alu 1 299 -13 225 283 61 30 chr9 5651886 5651985 -112210642 + L3 LINE CR1 398 499 -1078 828 297 183 73 chr9 5652043 5652161 -112210466 + L3 LINE CR1 647 751 -826 1980 162 0 0 chr9 5652161 5652463 -112210164 + AluJb SINE Alu 8 309 -3 828 297 183 73 chr9 5652463 5652690 -112209937 + L3 LINE CR1 751 952 -625 1931 155 3 3 chr9 5652690 5652987 -112209640 + AluJb SINE Alu 1 297 -15 828 297 183 73 chr9 5652987 5653476 -112209151 + L3 LINE CR1 952 1574 -3 300 261 136 11 chr9 5653483 5653571 -112209056 + MIR3 SINE MIR 99 197 -11 451 270 117 7 chr9 5655112 5655249 -112207378 + MIR SINE MIR 32 183 -79 2079 138 3 0 chr9 5655294 5655592 -112207035 - AluSx SINE Alu -13 299 1 21 71 0 0 chr9 5655973 5656015 -112206612 + AT_rich Low_complexity Low_complexity 1 42 0 213 59 0 29 chr9 5656051 5656085 -112206542 - L2 LINE L2 0 3272 3240 372 318 68 27 chr9 5656817 5657037 -112205590 - MIR SINE MIR -6 256 28 883 241 117 14 chr9 5657653 5657944 -112204683 - MER5C DNA MER1_type -2 322 2 2426 91 3 0 chr9 5657956 5658263 -112204364 - AluSx SINE Alu -4 308 1 192 152 0 0 chr9 5658366 5658399 -112204228 + T-rich Low_complexity Low_complexity 1 33 0 691 79 0 11 chr9 5658686 5658775 -112203852 - AluJb SINE Alu -194 118 31 220 196 0 39 chr9 5659540 5659591 -112203036 + L2 LINE L2 3262 3310 -3 382 225 200 8 chr9 5660121 5660241 -112202386 - MER5A DNA MER1_type 0 189 47 1016 101 51 6 chr9 5660241 5660399 -112202228 + MSTB LTR MaLR 1 165 -261 1750 193 90 69 chr9 5660407 5660916 -112201711 + MER21B LTR ERV1 299 818 -45 968 145 0 0 chr9 5661008 5661139 -112201488 - FLAM_C SINE Alu -2 131 1 1680 151 33 4 chr9 5661952 5662223 -112200404 + AluJb SINE Alu 1 279 -33 1015 198 68 34 chr9 5663246 5663483 -112199144 - MIR SINE MIR 0 262 18 343 298 89 0 chr9 5664100 5664224 -112198403 - MIR3 SINE MIR -4 204 70 291 274 27 0 chr9 5665067 5665140 -112197487 + L2 LINE L2 3184 3258 -14 231 163 20 20 chr9 5665141 5665190 -112197437 + GA-rich Low_complexity Low_complexity 2 50 0 597 262 115 0 chr9 5665804 5665987 -112196640 - MIR SINE MIR -52 210 7 266 236 167 0 chr9 5666156 5666228 -112196399 + MIR SINE MIR 63 146 -116 589 248 35 0 chr9 5666229 5666374 -112196253 + L1MC4a LINE L1 5674 5823 -1985 2352 137 2 68 chr9 5666374 5666798 -112195829 + MER61E LTR ERV1 54 449 -120 479 221 50 61 chr9 5666807 5666988 -112195639 + L1MC4a LINE L1 5812 5990 -1818 1287 265 38 19 chr9 5667057 5667508 -112195119 - LTR33 LTR ERVL -1 520 1 1755 118 49 26 chr9 5667579 5667885 -112194742 + AluSq SINE Alu 1 313 0 2054 97 18 4 chr9 5668224 5668539 -112194088 - AluSx SINE Alu 0 319 1 359 277 161 19 chr9 5668746 5668901 -112193726 - MER5B DNA MER1_type 0 178 2 356 299 90 57 chr9 5668949 5669193 -112193434 + L2 LINE L2 2839 3090 -182 934 284 56 40 chr9 5669312 5669816 -112192811 + L1ME4a LINE L1 5506 6017 -104 506 311 0 8 chr9 5669919 5670041 -112192586 - MER91A DNA MER1_type 0 196 76 409 303 55 0 chr9 5670069 5670214 -112192413 - L1ME3A LINE L1 -230 5940 5788 2201 283 82 39 chr9 5670849 5672568 -112190059 + L1MEc LINE L1 2141 3785 -2430 1850 167 3 10 chr9 5672568 5672896 -112189731 + AluJb SINE Alu 1 312 0 2201 283 82 39 chr9 5672896 5672907 -112189720 + L1MEc LINE L1 3785 3794 -2421 2151 122 0 0 chr9 5672907 5673220 -112189407 + AluSq SINE Alu 1 313 0 2201 283 82 39 chr9 5673220 5673295 -112189332 + L1MEc LINE L1 3794 3982 -2233 1221 266 81 75 chr9 5673315 5673538 -112189089 + L1MEc LINE L1 4136 4356 -1859 2162 107 7 3 chr9 5673538 5673829 -112188798 + AluSp SINE Alu 1 292 -21 1221 266 81 75 chr9 5673829 5673955 -112188672 + L1MEc LINE L1 4356 4480 -1735 2692 106 19 6 chr9 5673955 5674314 -112188313 + THE1B LTR MaLR 1 364 0 1221 266 81 75 chr9 5674314 5675131 -112187496 + L1MEc LINE L1 4480 5311 -904 558 270 92 25 chr9 5675135 5675331 -112187296 + MER63A DNA MER1_type 2 210 0 784 250 72 51 chr9 5675331 5675577 -112187050 + L1MEc LINE L1 5305 5544 -687 835 191 0 22 chr9 5675577 5675713 -112186914 + FLAM_A SINE Alu 1 133 0 784 250 72 51 chr9 5675713 5675970 -112186657 + L1MEc LINE L1 5544 5817 -414 1119 240 193 14 chr9 5675971 5676388 -112186239 - MLT2F LTR ERVL -3 660 93 258 121 172 35 chr9 5676394 5676452 -112186175 - MIR3 SINE MIR -46 162 97 30 69 0 0 chr9 5677279 5677337 -112185290 + AT_rich Low_complexity Low_complexity 1 58 0 32 0 0 0 chr9 5677497 5677529 -112185098 + AT_rich Low_complexity Low_complexity 1 32 0 381 213 12 0 chr9 5677946 5678026 -112184601 - LTR16A LTR ERVL -5 445 365 1989 89 4 0 chr9 5678245 5678502 -112184125 - L1PB1 LINE L1 -1 6150 5893 264 295 11 32 chr9 5679471 5679566 -112183061 - MIR SINE MIR -2 260 168 205 298 0 0 chr9 5679598 5679645 -112182982 - MIR SINE MIR -196 66 20 1537 249 66 10 chr9 5679761 5680155 -112182472 + LTR16C LTR ERVL 76 491 0 2322 102 0 0 chr9 5680656 5680949 -112181678 - AluSg SINE Alu -17 293 1 1787 120 69 4 chr9 5681134 5681410 -112181217 + AluSx SINE Alu 1 294 -18 2050 116 31 7 chr9 5681860 5682152 -112180475 - AluSx SINE Alu -13 299 1 203 86 0 29 chr9 5682758 5682793 -112179834 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 787 219 125 5 chr9 5683226 5683418 -112179209 + MIR SINE MIR 48 262 0 407 304 28 66 chr9 5683923 5684104 -112178523 - MER5A DNA MER1_type -9 180 7 22 0 0 0 chr9 5684196 5684218 -112178409 + AT_rich Low_complexity Low_complexity 1 22 0 4399 117 26 48 chr9 5684683 5685417 -112177210 + L1MB2 LINE L1 5343 6060 -111 26 50 0 0 chr9 5686010 5686050 -112176577 + AT_rich Low_complexity Low_complexity 1 40 0 6131 133 60 34 chr9 5686099 5686709 -112175918 - Tigger3b DNA MER2_type -1797 1231 639 2363 90 0 0 chr9 5686709 5687010 -112175617 - AluSg SINE Alu -9 301 1 2055 123 3 29 chr9 5687012 5687322 -112175305 - AluSx SINE Alu -10 302 1 6131 133 60 34 chr9 5687322 5687464 -112175163 - Tigger3b DNA MER2_type -2389 639 502 1725 158 10 17 chr9 5687464 5687756 -112174871 - AluJo SINE Alu -14 298 9 6131 133 60 34 chr9 5687756 5688130 -112174497 - Tigger3b DNA MER2_type -2526 502 71 881 145 7 7 chr9 5688236 5688381 -112174246 - Tigger1 DNA MER2_type -185 2233 2089 2350 85 0 0 chr9 5688387 5688682 -112173945 - AluSc SINE Alu -14 295 1 1415 133 4 112 chr9 5688682 5688960 -112173667 - Tigger1 DNA MER2_type -864 1554 1307 9176 142 10 23 chr9 5688997 5689792 -112172835 - Tigger1 DNA MER2_type -921 1497 730 1660 174 27 20 chr9 5689792 5690086 -112172541 - AluJo SINE Alu -14 298 3 9176 142 10 23 chr9 5690086 5690753 -112171874 - Tigger1 DNA MER2_type -1688 730 55 1630 176 35 3 chr9 5690886 5691175 -112171452 - AluJb SINE Alu -14 298 1 2215 126 7 0 chr9 5691336 5691646 -112170981 + AluSx SINE Alu 1 312 0 380 253 55 0 chr9 5691797 5691888 -112170739 - Tigger1 DNA MER2_type -2254 164 69 880 104 0 0 chr9 5691890 5692005 -112170622 - AluSg/x SINE Alu -13 299 185 2367 95 3 0 chr9 5692129 5692434 -112170193 + AluSp SINE Alu 1 306 -7 2132 101 10 3 chr9 5693282 5693578 -112169049 - AluSx SINE Alu -14 298 1 23 68 0 0 chr9 5694524 5694568 -112168059 + GC_rich Low_complexity Low_complexity 1 44 0 237 211 0 0 chr9 5696418 5696475 -112166152 + (TA)n Simple_repeat Simple_repeat 1 57 0 1984 62 0 4 chr9 5697144 5697385 -112165242 + AluSc SINE Alu 61 300 -9 4700 163 49 37 chr9 5699254 5700544 -112162083 - L1MA9 LINE L1 -5 7726 6416 396 104 0 0 chr9 5700553 5700620 -112162007 - L1MA3 LINE L1 -1 6304 6238 339 62 44 239 chr9 5700620 5700682 -112161945 - L1MA2 LINE L1 -196 6108 6076 1599 193 44 0 chr9 5700682 5700956 -112161671 - AluJo SINE Alu -26 286 1 339 62 44 239 chr9 5700956 5701006 -112161621 - L1MA2 LINE L1 -228 6076 6018 11554 153 45 70 chr9 5701010 5701286 -112161341 - L1MA9 LINE L1 -1139 6426 6145 1629 181 40 27 chr9 5701286 5701656 -112160971 + THE1C LTR MaLR 1 375 0 11554 153 45 70 chr9 5701656 5701987 -112160640 - L1MA9 LINE L1 -1420 6145 5807 2249 120 3 0 chr9 5701987 5702295 -112160332 - AluSq SINE Alu -4 309 1 11554 153 45 70 chr9 5702295 5702688 -112159939 - L1MA9 LINE L1 -1758 5807 5406 3294 115 33 4 chr9 5702688 5702728 -112159899 - L1MA2 LINE L1 0 6304 6267 1879 161 0 31 chr9 5702728 5703045 -112159582 - AluJb SINE Alu -5 307 1 3294 115 33 4 chr9 5703045 5703550 -112159077 - L1MA2 LINE L1 -37 6267 5743 11554 153 45 70 chr9 5703550 5704592 -112158035 - L1MA9 LINE L1 -2159 5406 4340 1665 187 38 0 chr9 5704592 5704881 -112157746 - AluJb SINE Alu -12 300 1 11554 153 45 70 chr9 5704881 5706770 -112155857 - L1MA9 LINE L1 -3225 4340 2654 2439 64 3 0 chr9 5706770 5707067 -112155560 - AluY SINE Alu -13 298 1 11554 153 45 70 chr9 5707067 5708389 -112154238 - L1MA9 LINE L1 -4911 2654 1301 287 263 184 11 chr9 5708496 5708686 -112153941 + MER113 DNA MER1_type? 5 227 -294 1224 177 0 32 chr9 5708696 5708916 -112153711 + AluJb SINE Alu 3 215 -97 557 202 0 0 chr9 5709099 5709193 -112153434 + AluJb SINE Alu 198 291 -21 362 275 72 18 chr9 5709234 5709401 -112153226 + MER113 DNA MER1_type? 297 472 -49 30 59 0 0 chr9 5709452 5709503 -112153124 + AT_rich Low_complexity Low_complexity 1 51 0 793 242 57 8 chr9 5709788 5710052 -112152575 - L1ME1 LINE L1 -48 6118 5842 920 196 63 1 chr9 5710059 5710263 -112152364 - L1PB4 LINE L1 -2 6164 5948 1240 228 112 36 chr9 5710263 5710774 -112151853 - L1ME1 LINE L1 -339 5827 5320 964 240 65 0 chr9 5710784 5711013 -112151614 - AluJo SINE Alu -66 246 3 373 153 41 31 chr9 5711014 5711112 -112151515 - L1ME1 LINE L1 -821 5325 5227 * 3469 177 39 49 chr9 5711111 5712008 -112150619 - L1MB3 LINE L1 -65 6820 5934 483 200 62 76 chr9 5712014 5712159 -112150468 + Tigger3(Golem) DNA MER2_type 1 143 -2886 * 1375 169 4 11 chr9 5712155 5712415 -112150212 + Tigger3(Golem) DNA MER2_type 2772 3029 0 2946 267 35 16 chr9 5712415 5713568 -112149059 - L1MB3 LINE L1 -920 5928 4727 1960 142 0 37 chr9 5713568 5713613 -112149014 - AluSx SINE Alu 0 312 267 558 43 0 0 chr9 5713613 5713682 -112148945 + (TGG)n Simple_repeat Simple_repeat 2 70 0 1960 142 0 37 chr9 5713682 5713960 -112148667 - AluSx SINE Alu -45 267 1 2946 267 35 16 chr9 5713960 5714100 -112148527 - L1MB3 LINE L1 -2121 4727 4591 2655 135 41 3 chr9 5714093 5714676 -112147951 - L1M1 LINE L1 -541 5762 5164 * 751 164 8 8 chr9 5714699 5714827 -112147800 + AluJb SINE Alu 172 299 -13 433 230 7 30 chr9 5714829 5714964 -112147663 + L1 LINE L1 2764 2895 -3251 7242 216 55 37 chr9 5714965 5717096 -112145531 - L1MB3 LINE L1 -4679 2170 1 6600 162 35 18 chr9 5717095 5717235 -112145392 - L1M1 LINE L1 -1011 5135 4999 * 2213 113 7 13 chr9 5717235 5717544 -112145083 - AluSx SINE Alu -5 307 1 6600 162 35 18 chr9 5717544 5718804 -112143823 - L1M1 LINE L1 -1147 4999 3711 1599 221 14 45 chr9 5718806 5719262 -112143365 - L1M4 LINE L1 -1194 4952 4512 2233 136 0 0 chr9 5719262 5719572 -112143055 - AluSg SINE Alu 0 310 1 1599 221 14 45 chr9 5719572 5719627 -112143000 - L1M4 LINE L1 -1634 4512 4457 1351 153 5 23 chr9 5719680 5719895 -112142732 - AluJb SINE Alu -16 296 86 2101 130 3 13 chr9 5719908 5720224 -112142403 - AluSq SINE Alu 0 313 1 1759 144 26 52 chr9 5720224 5720529 -112142098 - AluSq SINE Alu -15 298 1 2411 220 58 74 chr9 5720559 5720968 -112141659 - L1M4 LINE L1 -1793 4353 3939 2227 117 3 0 chr9 5720968 5721277 -112141350 - AluSq SINE Alu -3 310 1 2411 220 58 74 chr9 5721277 5721542 -112141085 - L1M4 LINE L1 -2207 3939 3695 2347 82 0 13 chr9 5721542 5721846 -112140781 - AluY SINE Alu -11 300 1 2411 220 58 74 chr9 5721846 5722090 -112140537 - L1M4 LINE L1 -2451 3695 3449 452 359 42 9 chr9 5723061 5723278 -112139349 - MIR SINE MIR -5 257 34 2402 235 62 13 chr9 5723415 5724108 -112138519 + Cheshire DNA MER1_type 1 727 -1693 1202 220 33 3 chr9 5724099 5724399 -112138228 + Cheshire DNA MER1_type 940 1248 -1172 * 783 200 29 44 chr9 5724402 5724794 -112137833 + Cheshire DNA MER1_type 1373 2249 -171 959 206 31 182 chr9 5724804 5725522 -112137105 - L1M4 LINE L1 -1222 4924 4316 * 19874 156 21 10 chr9 5725517 5729804 -112132823 - L1PA11 LINE L1 -5 7607 3272 2202 94 7 17 chr9 5729804 5730101 -112132526 + AluSc SINE Alu 1 294 -15 19874 156 21 10 chr9 5730101 5730663 -112131964 - L1PA11 LINE L1 -4340 3272 2718 1073 143 15 0 chr9 5730669 5730865 -112131762 - L1P LINE L1 -3577 2569 2371 * 2297 205 45 30 chr9 5730861 5731926 -112130701 - L1PA11 LINE L1 -3551 4033 983 1537 222 109 2 chr9 5731927 5732479 -112130148 - L1M4 LINE L1 -1804 4840 4195 647 251 66 29 chr9 5732498 5732719 -112129908 - L1M4 LINE L1 -2713 3931 3689 1457 221 10 0 chr9 5732719 5733008 -112129619 + AluJo SINE Alu 1 292 -20 647 251 66 29 chr9 5733008 5733164 -112129463 - L1M4 LINE L1 -2955 3689 3540 1925 151 7 3 chr9 5733181 5733480 -112129147 - AluJo SINE Alu -12 300 1 624 72 10 21 chr9 5733510 5733607 -112129020 - THE1C-int LTR MaLR -1484 96 1 2549 105 13 8 chr9 5733607 5733980 -112128647 - THE1C LTR MaLR 0 375 1 2079 226 94 23 chr9 5733981 5734867 -112127760 - L1M4 LINE L1 -4833 1709 835 2410 74 0 12 chr9 5734886 5735225 -112127402 - L1PB1 LINE L1 -75 6076 5742 2393 122 129 9 chr9 5735283 5735716 -112126911 - MER31A LTR ERV1 0 485 1 21 0 0 0 chr9 5736121 5736142 -112126485 + AT_rich Low_complexity Low_complexity 1 21 0 2210 135 81 60 chr9 5736348 5736844 -112125783 - LTR8A LTR ERV1 0 727 222 1993 127 0 20 chr9 5736922 5737252 -112125375 - AluSx SINE Alu 0 324 1 413 337 96 38 chr9 5738234 5738632 -112123995 + HAL1 LINE L1 1181 1601 -906 371 233 188 0 chr9 5738896 5739029 -112123598 + L1MC4a LINE L1 5299 5456 -708 354 288 122 25 chr9 5739104 5739212 -112123415 + L1MC4a LINE L1 5574 5670 -2138 210 37 0 0 chr9 5739212 5739239 -112123388 + (TA)n Simple_repeat Simple_repeat 2 28 0 354 288 122 25 chr9 5739239 5739457 -112123170 + L1MC4a LINE L1 5670 5932 -1876 327 308 100 0 chr9 5739815 5739945 -112122682 + L1ME4a LINE L1 5979 6121 0 2964 90 33 11 chr9 5740158 5740612 -112122015 + MER4C LTR ERV1 2 465 0 1762 165 138 37 chr9 5740629 5741115 -112121512 - LTR10A LTR ERV1 -61 548 14 1268 92 61 0 chr9 5741580 5741776 -112120851 + LTR8A LTR ERV1 1 208 -519 771 162 0 0 chr9 5741776 5741893 -112120734 - FLAM_C SINE Alu -26 117 1 739 211 12 19 chr9 5742077 5742238 -112120389 - MIR SINE MIR -29 233 74 2332 230 48 11 chr9 5742406 5743067 -112119560 - L1ME1 LINE L1 -192 6043 5358 993 214 70 0 chr9 5743069 5743354 -112119273 - L1ME1 LINE L1 -1191 5024 4720 30478 43 10 5 chr9 5743529 5746492 -112116135 - L1PA4 LINE L1 -3 6152 3203 2860 7 0 0 chr9 5746492 5746802 -112115825 - AluY SINE Alu -1 310 1 30478 43 10 5 chr9 5746802 5749950 -112112677 - L1PA4 LINE L1 -2952 3203 7 243 0 0 0 chr9 5749951 5749978 -112112649 + (C)n Simple_repeat Simple_repeat 1 27 0 4077 230 138 31 chr9 5749980 5750765 -112111862 - L1ME1 LINE L1 -1508 4707 4007 7838 26 0 0 chr9 5750765 5752466 -112110161 + L1PA2 LINE L1 4453 6154 -1 4077 230 138 31 chr9 5752466 5753375 -112109252 - L1ME1 LINE L1 -2208 4007 2833 373 184 23 23 chr9 5753362 5753449 -112109178 - L1ME1 LINE L1 -4472 1924 1838 * 22 0 0 0 chr9 5753468 5753490 -112109137 + AT_rich Low_complexity Low_complexity 1 22 0 469 258 129 41 chr9 5753515 5753903 -112108724 - L1ME1 LINE L1 -5142 1254 833 * 761 268 39 9 chr9 5753895 5754126 -112108501 - L1ME1 LINE L1 -6066 330 93 2459 68 0 10 chr9 5754717 5755027 -112107600 - AluY SINE Alu -4 307 1 197 116 0 23 chr9 5756608 5756651 -112105976 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr9 5756665 5756697 -112105930 + AT_rich Low_complexity Low_complexity 1 32 0 331 296 59 30 chr9 5756745 5756914 -112105713 + L1ME4a LINE L1 5743 5916 -205 566 317 95 21 chr9 5757848 5758091 -112104536 + MIR SINE MIR 2 262 0 255 313 104 22 chr9 5758289 5758423 -112104204 + MIR SINE MIR 77 221 -41 735 256 103 0 chr9 5758513 5758716 -112103911 - MIR SINE MIR -38 224 1 450 292 141 48 chr9 5760596 5760908 -112101719 - L2 LINE L2 -42 3271 2931 2283 100 7 0 chr9 5761248 5761547 -112101080 - AluSx SINE Alu -11 301 1 295 65 0 87 chr9 5762381 5762427 -112100200 - L1ME LINE L1 -512 5654 5613 893 281 127 27 chr9 5762430 5763130 -112099497 - L1MEc LINE L1 -5571 825 56 193 267 22 0 chr9 5763465 5763510 -112099117 - L2 LINE L2 -18 3254 3209 197 324 93 86 chr9 5764303 5764442 -112098185 + MIR3 SINE MIR 21 160 -48 1907 177 80 6 chr9 5764823 5765173 -112097454 + MER6A DNA MER2_type 43 418 -187 31 18 0 53 chr9 5766239 5766296 -112096331 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr9 5766491 5766534 -112096093 + AT_rich Low_complexity Low_complexity 1 43 0 1775 123 67 7 chr9 5767005 5767289 -112095338 + AluSx SINE Alu 1 301 -11 1804 98 130 144 chr9 5767955 5768207 -112094420 - MSTA LTR MaLR 0 428 183 1997 110 3 26 chr9 5768207 5768515 -112094112 - AluSx SINE Alu -3 309 9 1804 98 130 144 chr9 5768515 5768692 -112093935 - MSTA LTR MaLR -245 183 5 2123 136 26 6 chr9 5768701 5769046 -112093581 - MSTA-int LTR MaLR -6 1645 1294 9368 210 86 49 chr9 5769053 5769892 -112092735 - L1MB8 LINE L1 -78 6336 5530 1674 186 27 3 chr9 5769892 5770188 -112092439 - AluJo SINE Alu -9 303 1 9368 210 86 49 chr9 5770188 5771855 -112090772 - L1MB8 LINE L1 -884 5530 3927 2013 114 21 4 chr9 5771855 5772135 -112090492 + AluSc SINE Alu 3 287 -22 9368 210 86 49 chr9 5772135 5773332 -112089295 - L1MB8 LINE L1 -2487 3927 2776 246 32 0 0 chr9 5773332 5773363 -112089264 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9368 210 86 49 chr9 5773363 5773647 -112088980 - L1MB8 LINE L1 -3638 2776 2504 270 56 0 0 chr9 5773647 5773683 -112088944 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9368 210 86 49 chr9 5773683 5774632 -112087995 - L1MB8 LINE L1 -3910 2504 1162 670 286 18 23 chr9 5774751 5774922 -112087705 - MLT1I LTR MaLR -191 218 49 423 344 48 11 chr9 5775078 5775267 -112087360 + MIR SINE MIR 50 245 -17 1208 278 115 35 chr9 5776038 5776916 -112085711 + HAL1 LINE L1 586 1533 -974 281 273 61 18 chr9 5776998 5777163 -112085464 - L1MC5 LINE L1 -188 7773 7602 22 35 0 0 chr9 5777231 5777260 -112085367 + AT_rich Low_complexity Low_complexity 1 29 0 6490 40 0 0 chr9 5777260 5778033 -112084594 - L1PA5 LINE L1 -8 6146 5374 1557 39 20 0 chr9 5778032 5778236 -112084391 + L1PA5 LINE L1 5156 5363 -783 * 236 247 41 0 chr9 5778278 5778351 -112084276 + HAL1 LINE L1 2432 2507 0 23 92 0 0 chr9 5779859 5779924 -112082703 + AT_rich Low_complexity Low_complexity 1 65 0 248 241 96 0 chr9 5780291 5780374 -112082253 + L1MC/D LINE L1 5801 5891 -1917 187 272 136 0 chr9 5781046 5781127 -112081500 + MIR3 SINE MIR 89 180 -28 294 73 0 0 chr9 5781459 5781500 -112081127 + (TCCCC)n Simple_repeat Simple_repeat 5 45 0 1499 139 20 90 chr9 5781520 5781821 -112080806 - AluJb SINE Alu -32 280 1 2067 111 14 24 chr9 5782002 5782299 -112080328 + AluSg SINE Alu 1 294 -16 691 164 16 8 chr9 5782524 5782646 -112079981 - FLAM_A SINE Alu -10 123 1 324 275 84 35 chr9 5782697 5782979 -112079648 - L1MEc LINE L1 -4933 1659 1344 3311 105 91 36 chr9 5783113 5783239 -112079388 - LTR24C LTR ERV1 0 635 517 2009 123 27 0 chr9 5783239 5783531 -112079096 + AluSx SINE Alu 1 300 -12 2440 84 3 0 chr9 5783535 5783843 -112078784 + AluSx SINE Alu 1 309 -3 3311 105 91 36 chr9 5783843 5784313 -112078314 - LTR24C LTR ERV1 -120 515 1 21 36 0 0 chr9 5784388 5784416 -112078211 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 61 61 chr9 5784774 5784921 -112077706 + L2 LINE L2 1964 2110 -1204 227 279 76 0 chr9 5784946 5785025 -112077602 - L2 LINE L2 -13 3300 3216 355 308 51 8 chr9 5785103 5785220 -112077407 + L2 LINE L2 3150 3271 -1 878 208 31 16 chr9 5785270 5785462 -112077165 - MER3 DNA MER1_type -8 201 7 812 292 78 25 chr9 5786618 5786932 -112075695 - HAL1 LINE L1 -76 2431 2080 1659 136 65 127 chr9 5786932 5787381 -112075246 - MER61B LTR ERV1 -4 421 1 812 292 78 25 chr9 5787381 5787555 -112075072 - HAL1 LINE L1 -427 2080 1917 2238 107 3 0 chr9 5787556 5787864 -112074763 - AluSp SINE Alu -4 309 1 21 0 0 0 chr9 5787932 5787953 -112074674 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr9 5788025 5788059 -112074568 + (TG)n Simple_repeat Simple_repeat 2 35 0 39832 73 8 3 chr9 5788239 5794352 -112068275 - L1PA5 LINE L1 -8 6146 3 492 259 54 7 chr9 5794353 5794500 -112068127 - HAL1 LINE L1 -585 1922 1769 850 316 103 58 chr9 5794558 5795334 -112067293 - HAL1 LINE L1 -1693 814 4 21 0 0 0 chr9 5795936 5795957 -112066670 + AT_rich Low_complexity Low_complexity 1 21 0 433 215 69 15 chr9 5796051 5796181 -112066446 + L1ME3A LINE L1 5810 5946 -224 793 308 58 29 chr9 5796473 5796954 -112065673 + L2 LINE L2 2753 3313 0 437 289 234 15 chr9 5797383 5797584 -112065043 - MIR SINE MIR -13 249 5 209 356 0 14 chr9 5797680 5797753 -112064874 - L2 LINE L2 -50 3263 3192 286 287 130 9 chr9 5798630 5798738 -112063889 - L2 LINE L2 -2 3311 3191 2196 67 17 17 chr9 5798940 5799239 -112063388 - AluY SINE Alu -12 299 1 401 206 130 54 chr9 5799417 5799695 -112062932 - L1 LINE L1 -2365 3781 3465 286 98 61 0 chr9 5799696 5799778 -112062849 + (TA)n Simple_repeat Simple_repeat 2 88 0 2071 126 10 0 chr9 5799778 5800080 -112062547 - AluSg SINE Alu -5 305 1 279 291 45 8 chr9 5800090 5800224 -112062403 - L1 LINE L1 -2672 3474 3336 326 170 113 70 chr9 5800404 5800555 -112062072 - L1ME3 LINE L1 -287 5875 5733 422 310 55 30 chr9 5800559 5800888 -112061739 - L1MC4 LINE L1 -214 7828 7492 349 302 189 0 chr9 5801467 5801636 -112060991 - L1MC4 LINE L1 -546 7496 7296 888 257 81 40 chr9 5801958 5802328 -112060299 + L1MEc LINE L1 43 427 -5969 * 957 166 90 18 chr9 5802326 5802549 -112060078 + L1MEc LINE L1 996 1234 -5162 21 36 0 0 chr9 5803024 5803052 -112059575 + AT_rich Low_complexity Low_complexity 1 28 0 2242 141 49 33 chr9 5803303 5803728 -112058899 - Tigger2a DNA MER2_type -2 432 1 576 229 70 84 chr9 5803741 5804076 -112058551 - L1ME3A LINE L1 -333 5837 5514 189 0 0 0 chr9 5804222 5804243 -112058384 + (T)n Simple_repeat Simple_repeat 1 21 0 13668 68 15 6 chr9 5804329 5806095 -112056532 - HERVL-A1 LTR ERVL -3872 1782 1 3427 51 13 27 chr9 5806095 5806545 -112056082 - MLT2A1 LTR ERVL 0 444 1 1021 286 113 43 chr9 5806731 5807936 -112054691 - L1MEd LINE L1 -4656 1473 269 230 309 114 65 chr9 5808875 5808998 -112053629 - L2 LINE L2 -6 3307 3179 1102 145 56 23 chr9 5809484 5809698 -112052929 - AluJo SINE Alu -11 301 81 1783 139 100 9 chr9 5810113 5810444 -112052183 - MER46B DNA MER2_type 0 236 1 428 353 42 32 chr9 5811003 5811193 -112051434 - MIR3 SINE MIR -2 206 15 24 0 0 0 chr9 5811891 5811915 -112050712 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 5811998 5812022 -112050605 + AT_rich Low_complexity Low_complexity 1 24 0 336 290 48 0 chr9 5812151 5812275 -112050352 + MER103 DNA DNA 34 163 -3 182 216 0 0 chr9 5814438 5814475 -112048152 + MIR3 SINE MIR 172 208 0 517 196 45 15 chr9 5814694 5814827 -112047800 - MIR3 SINE MIR -5 203 67 2500 74 6 3 chr9 5815441 5815753 -112046874 - AluSq SINE Alu 0 313 1 2109 103 4 0 chr9 5817050 5817331 -112045296 - AluSx SINE Alu -30 282 1 2169 113 17 0 chr9 5818111 5818412 -112044215 - AluSq SINE Alu -7 306 1 195 304 54 0 chr9 5819096 5819152 -112043475 - L2 LINE L2 -4 3268 3210 210 118 0 0 chr9 5819690 5819724 -112042903 + (TG)n Simple_repeat Simple_repeat 2 35 0 383 352 93 10 chr9 5819754 5819947 -112042680 - MIR SINE MIR -6 256 48 21 0 0 0 chr9 5820020 5820041 -112042586 + AT_rich Low_complexity Low_complexity 1 21 0 1901 121 10 17 chr9 5820121 5820411 -112042216 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr9 5820488 5820516 -112042111 + AT_rich Low_complexity Low_complexity 1 28 0 1762 148 93 3 chr9 5820940 5821251 -112041376 - MER44D DNA MER2_type 0 609 1 2106 117 0 0 chr9 5821317 5821631 -112040996 + AluSx SINE Alu 1 314 0 217 372 64 11 chr9 5823200 5823294 -112039333 - L2 LINE L2 -4 3268 3170 448 372 202 2 chr9 5823396 5823818 -112038809 - L2 LINE L2 -209 3063 2550 410 250 44 127 chr9 5824145 5824406 -112038221 - L3 LINE CR1 -202 1375 1143 2358 96 0 13 chr9 5824406 5824719 -112037908 - AluSc SINE Alu 0 309 1 410 250 44 127 chr9 5824719 5824773 -112037854 - L3 LINE CR1 -434 1143 1086 306 305 130 37 chr9 5824918 5825164 -112037463 + L1MC4 LINE L1 7381 7649 -393 228 171 0 0 chr9 5825177 5825212 -112037415 - tRNA-Val-GTG tRNA tRNA -39 37 3 565 234 94 61 chr9 5825225 5825588 -112037039 + L1MC5 LINE L1 7551 7925 -36 205 211 0 0 chr9 5825635 5825673 -112036954 + L3 LINE CR1 1081 1118 -459 208 313 116 36 chr9 5825803 5825915 -112036712 + L3 LINE CR1 1384 1504 -73 2427 84 0 7 chr9 5826781 5827090 -112035537 - AluSg SINE Alu -3 307 1 21 36 0 0 chr9 5827177 5827205 -112035422 + AT_rich Low_complexity Low_complexity 1 28 0 282 296 112 18 chr9 5827225 5827394 -112035233 + L2 LINE L2 2356 2540 -774 206 218 18 36 chr9 5828062 5828117 -112034510 + L2 LINE L2 3242 3295 -18 380 300 140 0 chr9 5830756 5830906 -112031721 + MIR SINE MIR 86 256 -6 1993 134 3 0 chr9 5831733 5832017 -112030610 - AluSx SINE Alu -27 285 1 4593 111 22 4 chr9 5832030 5832745 -112029882 - L1PB1 LINE L1 -2 6149 5422 203 226 0 19 chr9 5833200 5833253 -112029374 + MIR SINE MIR 210 261 -1 2358 84 3 0 chr9 5833267 5833563 -112029064 - AluSp SINE Alu -16 297 1 745 253 107 9 chr9 5833576 5833801 -112028826 - MIR SINE MIR -14 248 2 1734 157 7 20 chr9 5833925 5834218 -112028409 + AluJo SINE Alu 6 294 -18 1334 142 6 120 chr9 5836164 5836523 -112026104 + Cheshire DNA MER1_type 2103 2420 0 2158 206 113 20 chr9 5836744 5837401 -112025226 - L1MB1 LINE L1 -28 6161 5444 1203 221 124 53 chr9 5837433 5838053 -112024574 - L1MC5 LINE L1 -52 7909 7246 34 0 0 0 chr9 5838851 5838885 -112023742 + AT_rich Low_complexity Low_complexity 1 34 0 319 356 27 20 chr9 5839188 5839337 -112023290 + MIR3 SINE MIR 38 187 -21 25 0 0 0 chr9 5842336 5842361 -112020266 + AT_rich Low_complexity Low_complexity 1 25 0 629 197 164 20 chr9 5842606 5842966 -112019661 - L1MB7 LINE L1 -217 5967 5188 3671 206 154 29 chr9 5843175 5844376 -112018251 - L1MB7 LINE L1 -944 5202 3834 1639 200 7 0 chr9 5844376 5844666 -112017961 - AluJb SINE Alu -20 292 1 3671 206 154 29 chr9 5844666 5844723 -112017904 - L1MB7 LINE L1 -2312 3834 3786 11981 122 31 128 chr9 5844883 5847728 -112014899 + L1PA7 LINE L1 12 2579 -3567 8225 70 15 4 chr9 5847720 5849636 -112012991 + L1PA7 LINE L1 4212 6150 -4 * 229 308 162 0 chr9 5853462 5853579 -112009048 + MIR SINE MIR 20 155 -107 419 293 74 36 chr9 5854732 5855207 -112007420 + HAL1b LINE L1 153 645 -703 437 202 48 0 chr9 5855231 5855315 -112007312 - AluJb SINE Alu -22 290 203 226 171 0 0 chr9 5855342 5855383 -112007244 - Alu SINE Alu -33 269 229 1379 186 27 4 chr9 5855391 5855654 -112006973 - AluJo SINE Alu -43 269 1 829 98 0 0 chr9 5855846 5855958 -112006669 - AluSg/x SINE Alu -2 310 199 498 329 69 23 chr9 5856005 5856514 -112006113 + L1MDa LINE L1 2417 2953 -3587 582 176 30 30 chr9 5856533 5856664 -112005963 + L1ME2 LINE L1 6021 6151 -13 216 67 0 0 chr9 5856848 5856878 -112005749 + (GA)n Simple_repeat Simple_repeat 2 31 0 1740 174 46 17 chr9 5856883 5857234 -112005393 - MLT2D LTR ERVL -53 361 1 262 312 136 30 chr9 5857441 5857640 -112004987 - L2 LINE L2 -8 3305 3086 518 198 236 0 chr9 5858384 5858566 -112004061 + L1MCa LINE L1 2099 2323 -4103 * 7872 211 48 26 chr9 5858557 5861174 -112001453 + L1MC2 LINE L1 1840 4540 -1886 2362 95 7 0 chr9 5861174 5861480 -112001147 + AluSg SINE Alu 1 308 -2 7872 211 48 26 chr9 5861480 5862050 -112000577 + L1MC2 LINE L1 4540 5096 -1330 2431 169 122 19 chr9 5862038 5862724 -111999903 + L1MC2 LINE L1 5849 6610 -14 * 1507 151 77 49 chr9 5862724 5863009 -111999618 - AluJo SINE Alu -19 293 1 2431 169 122 19 chr9 5863009 5863021 -111999606 + L1MC2 LINE L1 6610 6619 -5 2454 84 0 0 chr9 5863044 5863343 -111999284 + AluSg SINE Alu 1 299 -11 2347 80 3 0 chr9 5863893 5864192 -111998435 - AluSp SINE Alu -13 300 1 717 243 109 0 chr9 5865230 5865432 -111997195 + MER58A DNA MER1_type 1 224 0 2208 116 0 3 chr9 5866069 5866370 -111996257 + AluSx SINE Alu 1 300 -12 2094 137 0 3 chr9 5868062 5868361 -111994266 - AluSx SINE Alu -13 299 2 769 119 0 0 chr9 5868602 5868738 -111993889 + AluSg/x SINE Alu 176 311 0 1785 161 0 39 chr9 5872105 5872416 -111990211 - AluJb SINE Alu -13 299 1 2177 128 0 0 chr9 5873140 5873444 -111989183 + AluSx SINE Alu 1 304 -8 735 148 17 9 chr9 5873682 5873797 -111988830 - FLAM_C SINE Alu -25 118 3 1696 137 76 4 chr9 5874413 5874695 -111987932 - AluJb SINE Alu 0 301 1 2378 48 10 0 chr9 5874706 5874996 -111987631 - AluY SINE Alu -18 293 1 517 265 53 20 chr9 5875229 5875380 -111987247 - L2 LINE L2 0 3313 3158 25 0 0 0 chr9 5876632 5876657 -111985970 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr9 5877008 5877049 -111985578 + A-rich Low_complexity Low_complexity 1 41 0 296 304 78 48 chr9 5877159 5877389 -111985238 + L2 LINE L2 1739 1975 -1339 273 280 160 10 chr9 5877352 5877452 -111985175 - L2 LINE L2 -3 3269 3155 * 247 246 90 0 chr9 5879061 5879129 -111983498 - L1ME LINE L1 -213 5908 5848 1397 140 35 0 chr9 5879129 5879357 -111983270 - MER46A DNA MER2_type 0 236 1 247 246 90 0 chr9 5879357 5879410 -111983217 - L1ME LINE L1 -273 5848 5776 23 33 0 0 chr9 5879423 5879453 -111983174 + AT_rich Low_complexity Low_complexity 1 30 0 226 240 13 0 chr9 5879526 5879601 -111983026 + (TA)n Simple_repeat Simple_repeat 1 76 0 599 290 34 65 chr9 5879712 5880036 -111982591 + MLT1I LTR MaLR 93 406 -3 1881 132 44 14 chr9 5880137 5880432 -111982195 + AluSx SINE Alu 1 304 -8 302 234 0 0 chr9 5880457 5880534 -111982093 + L1MCc LINE L1 1386 1462 -4961 301 273 47 53 chr9 5880555 5880705 -111981922 + L1MCc LINE L1 1675 1823 -5108 288 306 16 15 chr9 5880732 5880885 -111981742 + L1MCc LINE L1 1816 2069 -4862 1763 219 91 34 chr9 5880907 5881532 -111981095 + L1MC4 LINE L1 6785 7445 -597 23 78 0 0 chr9 5881590 5881641 -111980986 + AT_rich Low_complexity Low_complexity 1 51 0 332 258 126 0 chr9 5881858 5882025 -111980602 + L1MC4 LINE L1 7634 7821 -221 413 218 78 62 chr9 5882042 5882221 -111980406 - L1M4 LINE L1 -2243 3903 3722 646 235 143 0 chr9 5882242 5882459 -111980168 + L1ME4a LINE L1 5585 5832 -338 268 328 9 69 chr9 5882459 5882575 -111980052 - MIR SINE MIR -130 132 24 2335 90 0 0 chr9 5882575 5882874 -111979753 - AluY SINE Alu -12 299 1 2385 72 0 7 chr9 5882874 5883166 -111979461 - AluSx SINE Alu -22 290 1 376 221 127 70 chr9 5883538 5883696 -111978931 - L2 LINE L2 -1317 1997 1831 622 179 19 0 chr9 5883744 5883850 -111978777 + FRAM SINE Alu 53 160 -16 565 265 99 0 chr9 5883856 5884037 -111978590 - L2 LINE L2 -1502 1812 1614 1882 179 10 0 chr9 5884110 5884417 -111978210 + AluJo SINE Alu 1 310 -2 374 288 167 1 chr9 5884441 5884620 -111978007 - L1MC/D LINE L1 -460 5661 5459 2220 189 42 14 chr9 5884681 5884956 -111977671 + L1MB8 LINE L1 5577 5874 -304 2490 126 22 38 chr9 5884956 5885408 -111977219 + MER65A LTR ERV1 1 445 0 2220 189 42 14 chr9 5885408 5885629 -111976998 + L1MB8 LINE L1 5874 6087 -91 2141 110 3 0 chr9 5885694 5885985 -111976642 + AluSx SINE Alu 1 292 -20 262 238 10 50 chr9 5886043 5886144 -111976483 + L1ME4a LINE L1 5936 6032 -89 1825 172 7 0 chr9 5887647 5887943 -111974684 + AluJb SINE Alu 1 298 -14 1153 29 0 7 chr9 5888484 5888624 -111974003 + MER85 DNA T2_type 1 139 0 1692 169 37 10 chr9 5888678 5888974 -111973653 + AluJb SINE Alu 1 304 -8 1001 237 47 0 chr9 5889163 5889395 -111973232 + MIR SINE MIR 12 254 -8 811 137 0 0 chr9 5889967 5890084 -111972543 + AluJo/FLAM SINE Alu 1 117 -185 283 159 111 0 chr9 5890084 5890147 -111972480 - AluSp/q SINE Alu -2 301 232 575 232 103 13 chr9 5890925 5891149 -111971478 + L1ME4a LINE L1 5625 5868 -253 1614 197 13 7 chr9 5891158 5891467 -111971160 + AluJo SINE Alu 1 311 -1 228 297 45 45 chr9 5892172 5892283 -111970344 + MIR3 SINE MIR 6 116 -92 695 297 25 8 chr9 5892396 5892487 -111970140 - MIR SINE MIR -21 241 153 234 0 0 0 chr9 5892487 5892513 -111970114 + (CAT)n Simple_repeat Simple_repeat 2 27 0 695 297 25 8 chr9 5892513 5892657 -111969970 - MIR SINE MIR -109 153 2 1735 172 39 4 chr9 5893074 5893353 -111969274 - AluJb SINE Alu -23 289 1 341 247 0 0 chr9 5893369 5893450 -111969177 - MIR SINE MIR -108 154 74 237 269 100 41 chr9 5894242 5894380 -111968247 - L1ME4a LINE L1 -11 6110 5982 194 62 31 0 chr9 5894380 5894412 -111968215 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2255 91 3 19 chr9 5894419 5894726 -111967901 - AluSx SINE Alu -10 302 1 2306 63 0 7 chr9 5894735 5895052 -111967575 - AluY SINE Alu 0 315 1 237 269 100 41 chr9 5895052 5895214 -111967413 - L1ME4a LINE L1 -151 5970 5772 305 215 28 65 chr9 5896047 5896154 -111966473 + L1P5 LINE L1 5366 5468 -686 724 195 16 0 chr9 5897742 5897870 -111964757 - FLAM_A SINE Alu -3 130 1 25 0 0 0 chr9 5898007 5898032 -111964595 + AT_rich Low_complexity Low_complexity 1 25 0 387 239 46 15 chr9 5898084 5898214 -111964413 + L1ME4a LINE L1 5119 5252 -894 1339 155 76 55 chr9 5898412 5898703 -111963924 + AluSx SINE Alu 3 299 -13 552 280 100 47 chr9 5898750 5898845 -111963782 + L1ME4a LINE L1 5518 5607 -514 1771 158 47 10 chr9 5898845 5899143 -111963484 + AluJo SINE Alu 1 309 -3 552 280 100 47 chr9 5899143 5899408 -111963219 + L1ME4a LINE L1 5607 5897 -224 890 100 21 14 chr9 5899912 5900052 -111962575 + AluSg/x SINE Alu 170 310 -2 1715 211 88 25 chr9 5900091 5900622 -111962005 + L1MC2 LINE L1 4252 4816 -1330 * 2657 178 151 16 chr9 5900610 5901299 -111961328 + L1MC2 LINE L1 5569 6336 -8 1476 151 79 50 chr9 5901302 5901581 -111961046 - AluJo SINE Alu -25 287 1 2262 102 3 0 chr9 5901616 5901910 -111960717 + AluSg SINE Alu 1 295 -15 183 42 0 0 chr9 5901913 5901937 -111960690 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 1833 202 161 2 chr9 5902418 5902854 -111959773 - MLT1D LTR MaLR 0 505 1 394 294 16 8 chr9 5902864 5902990 -111959637 + MIR SINE MIR 53 179 -83 2445 79 0 0 chr9 5903013 5903318 -111959309 - AluY SINE Alu 0 311 7 409 246 0 101 chr9 5903796 5903934 -111958693 - MIR3 SINE MIR -2 206 83 2183 121 3 3 chr9 5903965 5904263 -111958364 + AluSx SINE Alu 1 298 -14 1578 101 0 0 chr9 5904265 5904463 -111958164 + AluSq SINE Alu 1 198 -115 383 127 0 16 chr9 5904464 5904527 -111958100 + AluSq SINE Alu 240 301 -1 374 193 48 0 chr9 5904528 5904611 -111958016 + L1MCa LINE L1 1578 1664 -4762 * 5849 167 49 66 chr9 5904608 5905937 -111956690 + L1MCa LINE L1 17 1322 -5104 1174 150 9 44 chr9 5905937 5906163 -111956464 + AluSx SINE Alu 1 218 -94 1829 151 21 3 chr9 5907583 5907868 -111954759 + AluSx SINE Alu 1 290 -22 532 220 83 64 chr9 5908298 5908516 -111954111 + MER34 LTR ERV1 295 516 -26 601 268 56 6 chr9 5908531 5908710 -111953917 + MER5A DNA MER1_type 1 188 -1 1685 171 7 52 chr9 5909919 5910228 -111952399 + AluJo SINE Alu 1 295 -17 1892 148 0 33 chr9 5910234 5910519 -111952108 + AluJo SINE Alu 1 277 -35 186 71 0 0 chr9 5910519 5910547 -111952080 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1892 148 0 33 chr9 5910547 5910564 -111952063 + AluJo SINE Alu 277 293 -19 216 0 0 0 chr9 5910824 5910848 -111951779 + (A)n Simple_repeat Simple_repeat 1 24 0 450 0 0 0 chr9 5911345 5911395 -111951232 + (CA)n Simple_repeat Simple_repeat 2 51 0 1052 216 65 8 chr9 5911475 5911720 -111950907 - MSTD LTR MaLR 0 396 138 937 157 187 57 chr9 5911723 5911953 -111950674 + AluJo SINE Alu 40 299 -13 23 0 0 0 chr9 5912356 5912379 -111950248 + AT_rich Low_complexity Low_complexity 1 23 0 1669 159 0 34 chr9 5912896 5913192 -111949435 - AluJo SINE Alu 0 312 27 21 36 0 0 chr9 5913231 5913259 -111949368 + AT_rich Low_complexity Low_complexity 1 28 0 2359 103 3 3 chr9 5913812 5914123 -111948504 - AluSx SINE Alu -1 311 1 1420 194 7 4 chr9 5914123 5914385 -111948242 - L1MB5 LINE L1 -111 6063 5798 22 0 0 0 chr9 5914394 5914416 -111948211 + AT_rich Low_complexity Low_complexity 1 22 0 216 314 29 0 chr9 5914898 5914968 -111947659 - MIR SINE MIR -111 151 80 382 265 43 8 chr9 5915873 5915990 -111946637 + L2 LINE L2 3188 3308 -5 716 208 136 61 chr9 5916452 5916746 -111945881 + L1MC5 LINE L1 7621 7936 -25 1222 106 116 10 chr9 5917757 5917964 -111944663 + MER30 DNA MER1_type 1 229 -1 517 92 23 2 chr9 5918080 5918298 -111944329 + AluY SINE Alu 1 262 -49 1346 90 22 0 chr9 5918300 5918478 -111944149 + AluY SINE Alu 100 281 -30 231 114 0 0 chr9 5918478 5918513 -111944114 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 667 191 38 23 chr9 5918523 5918654 -111943973 + AluJo SINE Alu 2 134 -178 2728 175 41 15 chr9 5918766 5919308 -111943319 + MER34B LTR ERV1 10 565 0 1561 134 119 32 chr9 5919462 5919739 -111942888 + AluSx SINE Alu 1 301 -11 419 205 139 0 chr9 5919991 5920142 -111942485 - MIR SINE MIR -2 260 89 203 368 0 0 chr9 5920267 5920335 -111942292 + L3 LINE CR1 1502 1569 -8 22 0 0 0 chr9 5920399 5920421 -111942206 + AT_rich Low_complexity Low_complexity 1 22 0 1218 64 146 0 chr9 5920630 5920801 -111941826 - MER30 DNA MER1_type -34 196 1 186 103 0 0 chr9 5921419 5921448 -111941179 + (CCG)n Simple_repeat Simple_repeat 3 31 0 184 244 47 58 chr9 5921849 5921935 -111940692 - MIR SINE MIR -54 208 124 266 324 29 15 chr9 5921935 5922071 -111940556 - MIR SINE MIR 0 262 125 748 315 91 37 chr9 5922379 5922863 -111939764 + L2 LINE L2 2758 3271 -1 275 247 0 108 chr9 5922928 5923021 -111939606 + L2 LINE L2 3155 3237 -35 426 85 0 0 chr9 5923032 5923091 -111939536 + (TG)n Simple_repeat Simple_repeat 2 60 0 242 56 28 0 chr9 5923283 5923319 -111939308 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 * 432 0 0 0 chr9 5923318 5923366 -111939261 + (TG)n Simple_repeat Simple_repeat 1 48 0 670 267 88 44 chr9 5923570 5923866 -111938761 - L2 LINE L2 -9 3304 2996 254 355 41 8 chr9 5923979 5924100 -111938527 - L2 LINE L2 -10 3262 3138 197 33 33 0 chr9 5924857 5924887 -111937740 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 216 339 125 16 chr9 5924984 5925176 -111937451 - MIR SINE MIR -29 233 21 250 287 9 43 chr9 5925389 5925504 -111937123 - MIR SINE MIR -72 190 80 315 278 70 17 chr9 5925595 5925710 -111936917 + MER117 DNA MER1_type 75 195 -2 228 171 0 0 chr9 5925830 5925871 -111936756 - L2 LINE L2 -19 3253 3213 1573 172 62 28 chr9 5926059 5926349 -111936278 + AluJo SINE Alu 1 300 -12 181 339 68 0 chr9 5926420 5926479 -111936148 + L2 LINE L2 3157 3219 -53 1735 137 69 7 chr9 5926730 5927036 -111935591 + MER65A LTR ERV1 1 325 -120 3251 32 0 0 chr9 5927036 5927500 -111935127 + L1PA5 LINE L1 5576 6153 -1 790 114 38 15 chr9 5927507 5927639 -111934988 + MER65A LTR ERV1 309 443 -2 1785 166 6 25 chr9 5927783 5928097 -111934530 - AluJo SINE Alu 0 312 5 237 151 94 19 chr9 5928179 5928232 -111934395 + LTR67 LTR ERVL 501 557 0 190 250 125 73 chr9 5928284 5928380 -111934247 - MIR SINE MIR -109 153 53 2239 89 24 7 chr9 5929711 5930002 -111932625 - AluSp SINE Alu -17 296 1 512 187 93 22 chr9 5930002 5930141 -111932486 - MIR SINE MIR -60 202 54 459 252 107 39 chr9 5930734 5930940 -111931687 - MIR SINE MIR -24 238 19 1988 134 0 0 chr9 5931306 5931581 -111931046 + AluSx SINE Alu 1 275 -37 335 304 51 22 chr9 5932111 5932249 -111930378 + L2 LINE L2 2921 3062 -251 187 143 0 0 chr9 5932423 5932451 -111930176 - L3 LINE CR1 -27 1550 1523 9065 108 14 9 chr9 5932626 5933834 -111928793 + HSMAR1 DNA Mariner 1 1218 -69 2371 86 0 3 chr9 5933834 5934126 -111928501 + AluSc SINE Alu 1 291 -18 9065 108 14 9 chr9 5934126 5934197 -111928430 + HSMAR1 DNA Mariner 1218 1287 0 581 159 0 28 chr9 5934700 5934807 -111927820 + U13 snRNA snRNA 1 104 0 590 97 0 174 chr9 5934817 5934972 -111927655 + MER53 DNA DNA 43 170 -19 524 62 0 0 chr9 5935109 5935174 -111927453 - HSMAR1 DNA Mariner 0 1287 1223 305 271 225 7 chr9 5938294 5938445 -111924182 - MLT1J LTR MaLR -158 353 170 353 275 169 7 chr9 5938479 5938621 -111924006 - MIR SINE MIR -90 172 8 853 247 155 43 chr9 5938825 5939453 -111923174 - LTR50 LTR ERVL -8 787 3 22 0 0 0 chr9 5939934 5939956 -111922671 + AT_rich Low_complexity Low_complexity 1 22 0 432 326 17 6 chr9 5940156 5940334 -111922293 - MER5A DNA MER1_type -1 188 9 191 254 113 14 chr9 5940591 5940662 -111921965 + MIR3 SINE MIR 6 83 -125 435 286 119 5 chr9 5940685 5940870 -111921757 + MIR SINE MIR 56 261 -1 251 337 11 0 chr9 5940890 5940982 -111921645 + MIR3 SINE MIR 108 200 -8 492 283 73 34 chr9 5941491 5941724 -111920903 + MIR SINE MIR 21 262 0 1961 167 32 47 chr9 5942412 5942609 -111920018 - MSTD LTR MaLR 0 396 207 1571 127 69 33 chr9 5942609 5942885 -111919742 - AluJb SINE Alu -15 297 12 1961 167 32 47 chr9 5942885 5943089 -111919538 - MSTD LTR MaLR -189 207 1 318 247 55 0 chr9 5944313 5944386 -111918241 + L2 LINE L2 3173 3249 -23 30 27 0 0 chr9 5944915 5944952 -111917675 + AT_rich Low_complexity Low_complexity 1 37 0 6188 180 45 91 chr9 5945715 5946066 -111916561 - L1MCa LINE L1 -1939 4487 4122 2067 144 0 10 chr9 5946066 5946372 -111916255 - AluJb SINE Alu -9 303 1 6188 180 45 91 chr9 5946372 5947000 -111915627 - L1MCa LINE L1 -2304 4122 3467 1558 154 0 126 chr9 5947000 5947357 -111915270 - AluJo SINE Alu 0 312 1 6188 180 45 91 chr9 5947357 5948414 -111914213 - L1MCa LINE L1 -2959 3467 2363 2230 112 0 3 chr9 5948414 5948709 -111913918 - AluSx SINE Alu -18 294 1 6188 180 45 91 chr9 5948709 5949025 -111913602 - L1MCa LINE L1 -4063 2363 2034 2080 110 28 14 chr9 5949025 5949315 -111913312 - AluSx SINE Alu -18 294 1 2321 104 0 0 chr9 5949324 5949623 -111913004 - AluY SINE Alu -12 299 1 6188 180 45 91 chr9 5949623 5949767 -111912860 - L1MCa LINE L1 -4178 2248 2099 1531 166 55 7 chr9 5949767 5950056 -111912571 + MER49 LTR ERV1 1 303 -620 417 132 60 24 chr9 5950030 5950139 -111912488 + MER4E LTR ERV1 62 284 -588 * 1664 211 23 8 chr9 5950138 5950489 -111912138 + MER4D LTR ERV1 548 903 0 1701 99 136 60 chr9 5950490 5950621 -111912006 - L1MCa LINE L1 -4325 2101 1981 1208 217 83 4 chr9 5950621 5950898 -111911729 + AluJo SINE Alu 2 300 -2 1701 99 136 60 chr9 5950898 5951118 -111911509 - L1MCa LINE L1 -4445 1981 1723 492 258 108 11 chr9 5951162 5951348 -111911279 - MIR SINE MIR -10 252 49 454 121 55 22 chr9 5951636 5951727 -111910900 + L1MB3 LINE L1 6088 6181 -2 1117 177 77 39 chr9 5951952 5952221 -111910406 + MER33 DNA MER1_type 1 285 -2300 2253 114 0 0 chr9 5952221 5952527 -111910100 + AluSq SINE Alu 1 306 -7 1117 177 77 39 chr9 5952527 5952568 -111910059 + MER33 DNA MER1_type 285 323 -1 951 211 32 0 chr9 5952577 5952762 -111909865 + MIR SINE MIR 1 191 -71 2409 76 3 0 chr9 5953817 5954108 -111908519 - AluSp SINE Alu -21 292 1 1074 240 137 36 chr9 5954384 5954801 -111907826 + MER113 DNA MER1_type? 21 479 -42 5549 154 32 38 chr9 5955469 5956078 -111906549 - L1 LINE L1 -866 5280 4680 2250 108 10 0 chr9 5956078 5956385 -111906242 - AluSx SINE Alu -2 310 1 5549 154 32 38 chr9 5956385 5956948 -111905679 - L1 LINE L1 -1466 4680 4115 2669 55 0 0 chr9 5958962 5959273 -111903354 - AluY SINE Alu 0 311 1 397 253 101 0 chr9 5959874 5959973 -111902654 - MIR SINE MIR -18 244 136 206 301 24 36 chr9 5960176 5960259 -111902368 + L2 LINE L2 2988 3069 -203 318 206 0 0 chr9 5961026 5961094 -111901533 + (TA)n Simple_repeat Simple_repeat 1 68 0 23 68 0 0 chr9 5961105 5961149 -111901478 + AT_rich Low_complexity Low_complexity 1 44 0 181 355 151 17 chr9 5961852 5962024 -111900603 - L2 LINE L2 -344 2970 2776 181 268 18 54 chr9 5962025 5962081 -111900546 - L2 LINE L2 -489 2825 2772 2050 101 3 62 chr9 5962102 5962410 -111900217 + AluSx SINE Alu 1 290 -22 1065 127 42 0 chr9 5962988 5963154 -111899473 + AluJb SINE Alu 5 177 -135 257 119 0 85 chr9 5963204 5963263 -111899364 + MADE1 DNA Mariner 27 80 0 677 149 74 0 chr9 5963263 5963384 -111899243 + AluSg/x SINE Alu 171 300 -12 22 35 0 0 chr9 5963783 5963812 -111898815 + AT_rich Low_complexity Low_complexity 1 29 0 369 0 0 0 chr9 5964094 5964135 -111898492 + (CA)n Simple_repeat Simple_repeat 2 42 0 1142 171 33 19 chr9 5968839 5969049 -111893578 - AluJo SINE Alu -16 296 84 2289 115 0 0 chr9 5969627 5969939 -111892688 + AluSx SINE Alu 1 312 0 2138 107 0 0 chr9 5970494 5970766 -111891861 - AluSg SINE Alu -38 272 1 1274 153 5 5 chr9 5970870 5971072 -111891555 - AluJb SINE Alu -24 288 87 2187 78 0 0 chr9 5971077 5971347 -111891280 - AluY SINE Alu -7 304 35 263 182 61 15 chr9 5971394 5971460 -111891167 + MIR SINE MIR 97 165 -97 246 274 44 71 chr9 5971560 5971673 -111890954 + L3b LINE CR1 1390 1499 -84 4739 252 99 23 chr9 5971673 5973501 -111889126 + L2 LINE L2 1326 3311 -2 21 36 0 0 chr9 5973935 5973963 -111888664 + AT_rich Low_complexity Low_complexity 1 28 0 416 314 92 59 chr9 5974246 5974485 -111888142 - MIR SINE MIR -2 260 14 245 133 67 0 chr9 5974678 5974723 -111887904 - L1MB8 LINE L1 0 6178 6131 225 0 0 0 chr9 5974920 5974945 -111887682 + (TA)n Simple_repeat Simple_repeat 2 26 0 1725 167 0 13 chr9 5976944 5977249 -111885378 - MER2 DNA MER2_type -44 301 1 29 47 0 0 chr9 5977445 5977488 -111885139 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 5977688 5977709 -111884918 + AT_rich Low_complexity Low_complexity 1 21 0 2013 147 0 22 chr9 5978904 5979216 -111883411 - AluSx SINE Alu -7 305 1 266 132 0 0 chr9 5979290 5979328 -111883299 - tRNA-Lys-AAG tRNA tRNA -38 38 1 1717 187 3 0 chr9 5980624 5980918 -111881709 + AluJb SINE Alu 1 295 -17 2096 122 3 7 chr9 5981498 5981794 -111880833 + AluSg SINE Alu 1 295 -15 2199 90 7 3 chr9 5981825 5982115 -111880512 + AluSx SINE Alu 21 311 -1 21 36 0 0 chr9 5982668 5982696 -111879931 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 27 chr9 5982721 5982735 -111879892 + AT_rich Low_complexity Low_complexity 1 14 -22 1653 160 0 28 chr9 5982735 5983017 -111879610 + AluJo SINE Alu 27 300 -12 26 0 0 27 chr9 5983017 5983039 -111879588 + AT_rich Low_complexity Low_complexity 14 36 0 211 369 63 36 chr9 5983072 5983183 -111879444 + L2 LINE L2 3157 3270 -2 23 0 0 0 chr9 5983548 5983571 -111879056 + AT_rich Low_complexity Low_complexity 1 23 0 631 222 108 75 chr9 5984269 5984481 -111878146 - MER20 DNA MER1_type 0 219 1 2133 71 7 68 chr9 5984734 5985043 -111877584 - AluSg SINE Alu -20 290 1 22 35 0 0 chr9 5985442 5985471 -111877156 + AT_rich Low_complexity Low_complexity 1 29 0 265 128 0 0 chr9 5986289 5986336 -111876291 + L1MC2 LINE L1 6289 6335 -9 32 57 0 0 chr9 5986540 5986593 -111876034 + AT_rich Low_complexity Low_complexity 1 53 0 300 65 81 0 chr9 5986950 5987012 -111875615 + (CATAA)n Simple_repeat Simple_repeat 4 70 0 1898 149 3 3 chr9 5987426 5987727 -111874900 - AluJo SINE Alu -11 301 1 22 0 0 0 chr9 5989650 5989672 -111872955 + AT_rich Low_complexity Low_complexity 1 22 0 335 130 159 0 chr9 5990680 5990749 -111871878 + MER116 DNA Mariner 1 80 0 493 236 203 0 chr9 5991745 5991868 -111870759 - MER5A DNA MER1_type -1 188 41 21 57 0 0 chr9 5992104 5992139 -111870488 + AT_rich Low_complexity Low_complexity 1 35 0 193 230 58 69 chr9 5992673 5992760 -111869867 - L3 LINE CR1 -1 1576 1491 22 0 0 0 chr9 5993337 5993359 -111869268 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr9 5993379 5993422 -111869205 + AT_rich Low_complexity Low_complexity 1 43 0 687 136 0 0 chr9 5993817 5993948 -111868679 + AluSc SINE Alu 189 319 0 803 191 56 28 chr9 5994909 5995087 -111867540 - MIR SINE MIR -71 191 9 282 317 10 30 chr9 5995098 5995199 -111867428 + MER5A DNA MER1_type 91 189 0 1850 132 69 36 chr9 5995252 5995585 -111867042 + MER2 DNA MER2_type 1 344 0 378 0 0 0 chr9 5995586 5995628 -111866999 + (CA)n Simple_repeat Simple_repeat 2 43 0 181 160 20 20 chr9 5996474 5996524 -111866103 + CT-rich Low_complexity Low_complexity 2 51 0 1990 103 18 11 chr9 5996551 5996871 -111865756 - AluSp SINE Alu 0 322 1 446 200 40 153 chr9 5996898 5997173 -111865454 + MER112 DNA MER1_type 11 254 -6 213 150 17 33 chr9 5998228 5998288 -111864339 + (TA)n Simple_repeat Simple_repeat 2 60 0 477 279 29 23 chr9 6000015 6000187 -111862440 - MER5A DNA MER1_type 0 189 17 285 234 0 85 chr9 6000428 6000481 -111862146 + L2 LINE L2 3208 3251 -62 959 210 83 5 chr9 6000481 6000686 -111861941 - MER58A DNA MER1_type -3 221 1 285 234 0 85 chr9 6000686 6000726 -111861901 + L2 LINE L2 3251 3293 -20 348 169 28 0 chr9 6001526 6001597 -111861030 - MER116 DNA Mariner -5 75 3 233 227 53 27 chr9 6004197 6004272 -111858355 - L1M3f LINE L1 -5022 306 230 429 325 38 19 chr9 6005062 6005219 -111857408 - L2 LINE L2 -3 3269 3110 659 257 43 104 chr9 6005284 6005507 -111857120 + MLT1J LTR MaLR 1 236 -275 1956 156 3 19 chr9 6005507 6005821 -111856806 + AluJo SINE Alu 1 309 -3 659 257 43 104 chr9 6005821 6005893 -111856734 + MLT1J LTR MaLR 236 311 -200 1973 194 29 52 chr9 6005893 6006409 -111856218 - MLT1D LTR MaLR -1 504 1 659 257 43 104 chr9 6006409 6006555 -111856072 + MLT1J LTR MaLR 311 416 -95 241 300 80 0 chr9 6006638 6006738 -111855889 - L2 LINE L2 -237 3035 2928 1935 123 0 0 chr9 6007087 6007347 -111855280 + AluSx SINE Alu 31 290 -22 594 81 12 0 chr9 6007447 6007533 -111855094 + L1M4 LINE L1 2636 2722 -3424 480 267 105 53 chr9 6007567 6007814 -111854813 + HAL1 LINE L1 1076 1335 -1172 3296 99 12 12 chr9 6007821 6008307 -111854320 + MER41A LTR ERV1 1 486 -68 2325 110 0 0 chr9 6008466 6008774 -111853853 + AluSq SINE Alu 1 308 -5 775 222 53 113 chr9 6010024 6010290 -111852337 + MIR SINE MIR 10 259 -3 254 376 73 18 chr9 6010446 6010555 -111852072 + L2 LINE L2 3108 3222 -50 596 296 42 19 chr9 6010775 6010991 -111851636 - MIR SINE MIR -7 255 35 379 294 95 50 chr9 6011031 6011252 -111851375 - MIR SINE MIR -12 250 20 27 0 0 0 chr9 6011448 6011475 -111851152 + AT_rich Low_complexity Low_complexity 1 27 0 229 152 0 0 chr9 6012148 6012181 -111850446 + Alu SINE Alu 136 168 -135 578 130 10 0 chr9 6012181 6012281 -111850346 + FLAM_A SINE Alu 16 116 -26 708 212 42 94 chr9 6012977 6013189 -111849438 + MIR SINE MIR 59 259 -3 2402 91 0 0 chr9 6013940 6014248 -111848379 + AluSq SINE Alu 1 308 -5 496 250 55 30 chr9 6014438 6014638 -111847989 + L1ME4a LINE L1 5712 5916 -205 23 0 0 0 chr9 6015144 6015167 -111847460 + AT_rich Low_complexity Low_complexity 1 23 0 2054 20 0 0 chr9 6015553 6015806 -111846821 - L1PA2 LINE L1 -2909 3237 2985 17907 30 0 0 chr9 6015806 6018730 -111843897 + L1PA2 LINE L1 3227 6155 0 464 203 133 31 chr9 6018985 6019051 -111843576 + MER103 DNA DNA 26 84 -82 555 253 119 66 chr9 6019051 6019371 -111843256 + MER46C DNA MER2_type 1 337 -1 464 203 133 31 chr9 6019371 6019432 -111843195 + MER103 DNA DNA 84 166 0 21 36 0 0 chr9 6020028 6020056 -111842571 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr9 6020073 6020101 -111842526 + AT_rich Low_complexity Low_complexity 1 28 0 2283 114 0 0 chr9 6020111 6020418 -111842209 - AluSg SINE Alu -3 307 1 2240 102 0 7 chr9 6023202 6023506 -111839121 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 6023923 6023946 -111838681 + AT_rich Low_complexity Low_complexity 1 23 0 1794 182 76 50 chr9 6024122 6024429 -111838198 + L1M4 LINE L1 5019 5317 -867 2204 125 0 3 chr9 6024429 6024740 -111837887 + AluSq SINE Alu 1 310 -3 1794 182 76 50 chr9 6024740 6025133 -111837494 + L1M4 LINE L1 5317 5749 -435 23 33 0 0 chr9 6025323 6025353 -111837274 + AT_rich Low_complexity Low_complexity 1 30 0 393 321 82 51 chr9 6025439 6026050 -111836577 + L1MEd LINE L1 409 1038 -5167 2270 191 34 0 chr9 6026069 6026487 -111836140 + MSTB1 LTR MaLR 1 432 0 250 284 67 8 chr9 6026487 6026621 -111836006 + HAL1 LINE L1 1504 1645 -862 2134 132 0 0 chr9 6026845 6027133 -111835494 + AluSx SINE Alu 1 288 -24 1744 174 24 0 chr9 6027267 6027565 -111835062 + AluJo SINE Alu 1 305 -7 532 285 68 41 chr9 6027583 6027994 -111834633 + L1MEd LINE L1 1246 1667 -4729 1193 255 66 45 chr9 6028015 6028411 -111834216 + L1MEc LINE L1 38 441 -5955 2181 206 71 36 chr9 6028439 6028814 -111833813 + L1MEc LINE L1 530 937 -5459 2309 106 3 13 chr9 6028814 6029126 -111833501 + AluSq SINE Alu 1 309 -4 2181 206 71 36 chr9 6029126 6029368 -111833259 + L1MEc LINE L1 937 1169 -5227 624 190 83 24 chr9 6029641 6029846 -111832781 + HAL1 LINE L1 2261 2477 -30 195 320 48 39 chr9 6030688 6030791 -111831836 - MIR SINE MIR -64 144 41 2294 70 42 0 chr9 6031226 6031511 -111831116 + AluY SINE Alu 1 297 -14 467 233 40 45 chr9 6032205 6032381 -111830246 - LTR67 LTR ERVL -3 554 380 415 350 0 21 chr9 6032544 6032687 -111829940 - LTR67 LTR ERVL -405 152 13 1852 148 20 10 chr9 6032892 6033195 -111829432 + AluJb SINE Alu 1 306 -6 2135 132 7 0 chr9 6033395 6033705 -111828922 + AluSx SINE Alu 1 312 0 219 69 0 0 chr9 6034585 6034614 -111828013 + (CAA)n Simple_repeat Simple_repeat 2 30 0 357 331 70 6 chr9 6034788 6034945 -111827682 + LTR33 LTR ERVL 90 256 -265 216 290 145 0 chr9 6035149 6035211 -111827416 - L2 LINE L2 -994 2320 2250 548 97 18 26 chr9 6035211 6035324 -111827303 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 310 269 48 87 chr9 6035325 6035533 -111827094 + L1ME3 LINE L1 5668 5867 -295 1080 59 0 0 chr9 6035557 6035692 -111826935 + L1PB1 LINE L1 6010 6144 -7 210 143 0 0 chr9 6035694 6035729 -111826898 + (TATG)n Simple_repeat Simple_repeat 2 36 0 571 243 40 12 chr9 6035837 6036010 -111826617 + L1MC4a LINE L1 36 213 -6183 2283 138 104 3 chr9 6036024 6036408 -111826219 + MSTC LTR MaLR 6 428 0 405 358 55 12 chr9 6036409 6036574 -111826053 + L1MC4a LINE L1 213 384 -6012 273 231 0 0 chr9 6036669 6036721 -111825906 + MER2 DNA MER2_type 294 345 0 615 296 89 25 chr9 6036781 6037176 -111825451 + L1MC4a LINE L1 494 913 -5483 286 190 175 36 chr9 6037188 6037325 -111825302 + L1MC4a LINE L1 974 1129 -5267 1443 240 84 57 chr9 6037335 6037623 -111825004 + L1MC4a LINE L1 1332 1611 -4785 396 0 0 0 chr9 6037623 6037667 -111824960 + (CA)n Simple_repeat Simple_repeat 2 45 0 1443 240 84 57 chr9 6037667 6038165 -111824462 + L1MC4a LINE L1 1611 2139 -4257 509 222 36 30 chr9 6038141 6038308 -111824319 + L1MC4a LINE L1 2415 2582 -3633 * 1939 239 102 21 chr9 6038304 6039164 -111823463 + L1MC4a LINE L1 4365 5349 -866 2352 94 3 0 chr9 6039164 6039473 -111823154 + AluSp SINE Alu 1 310 -3 1939 239 102 21 chr9 6039473 6039495 -111823132 + L1MC4a LINE L1 5349 5368 -847 4763 77 22 2 chr9 6039634 6040274 -111822353 - L1PA10 LINE L1 -9 6159 5507 23 0 0 0 chr9 6040309 6040332 -111822295 + AT_rich Low_complexity Low_complexity 1 23 0 591 253 10 3 chr9 6040638 6040834 -111821793 + MIR SINE MIR 6 262 0 192 255 43 0 chr9 6041449 6041496 -111821131 + MIR SINE MIR 100 148 -60 196 375 0 0 chr9 6041642 6041698 -111820929 + L3 LINE CR1 1521 1576 -1 24 53 0 0 chr9 6041835 6041873 -111820754 + AT_rich Low_complexity Low_complexity 1 38 0 2284 96 3 13 chr9 6042609 6042923 -111819704 + AluSp SINE Alu 1 311 -2 860 169 38 76 chr9 6042923 6043107 -111819520 + AluJb SINE Alu 126 302 -10 1900 125 45 3 chr9 6043328 6043616 -111819011 - AluJb SINE Alu -12 300 1 21 36 0 0 chr9 6044035 6044063 -111818564 + AT_rich Low_complexity Low_complexity 1 28 0 666 318 84 14 chr9 6044429 6044914 -111817713 + L1MC4a LINE L1 5456 5974 -1903 189 0 0 0 chr9 6044968 6044989 -111817638 + (TA)n Simple_repeat Simple_repeat 2 22 0 1017 302 79 23 chr9 6045115 6045228 -111817399 + L2 LINE L2 2600 2705 -608 2154 125 0 7 chr9 6045228 6045533 -111817094 + AluSx SINE Alu 1 303 -9 1017 302 79 23 chr9 6045533 6046082 -111816545 + L2 LINE L2 2705 3299 -14 21 36 0 0 chr9 6046226 6046254 -111816373 + AT_rich Low_complexity Low_complexity 1 28 0 585 131 82 112 chr9 6046679 6046821 -111815806 + Charlie7 DNA MER1_type 1822 1958 -654 2254 102 10 0 chr9 6046821 6047124 -111815503 + AluSx SINE Alu 1 306 -6 585 131 82 112 chr9 6047124 6047187 -111815440 + Charlie7 DNA MER1_type 1958 2021 -591 1492 251 122 9 chr9 6047197 6047656 -111814971 - LTR33 LTR ERVL -10 511 1 613 236 61 8 chr9 6047658 6048155 -111814472 + Charlie7 DNA MER1_type 2020 2612 0 2347 82 3 3 chr9 6048683 6048987 -111813640 - AluSp SINE Alu -9 304 1 242 327 111 7 chr9 6049311 6049464 -111813163 + L2 LINE L2 1792 1960 -1354 292 303 183 6 chr9 6049760 6049935 -111812692 - L2 LINE L2 -914 2400 2195 22 56 0 0 chr9 6049943 6049979 -111812648 + AT_rich Low_complexity Low_complexity 1 36 0 1965 150 0 38 chr9 6050095 6050415 -111812212 - AluSx SINE Alu -1 311 4 260 276 145 41 chr9 6051548 6051693 -111810934 - L2 LINE L2 0 3313 3154 282 320 98 7 chr9 6051811 6051964 -111810663 - L2 LINE L2 -841 2473 2307 23 0 0 0 chr9 6052865 6052888 -111809739 + AT_rich Low_complexity Low_complexity 1 23 0 271 318 88 46 chr9 6053367 6053543 -111809084 + L2 LINE L2 2793 2962 -310 418 261 55 12 chr9 6053814 6053979 -111808648 - L1ME4a LINE L1 -5 6116 5945 202 357 137 15 chr9 6054850 6055304 -111807323 + L2 LINE L2 2430 2938 -376 222 296 84 0 chr9 6055383 6055454 -111807173 + L2 LINE L2 3191 3267 -5 207 186 0 23 chr9 6055993 6056036 -111806591 + L2 LINE L2 3226 3267 -5 1687 166 30 27 chr9 6056475 6056771 -111805856 - AluSq SINE Alu -15 298 2 21 0 0 0 chr9 6056979 6057000 -111805627 + AT_rich Low_complexity Low_complexity 1 21 0 37 39 0 0 chr9 6057538 6057589 -111805038 + AT_rich Low_complexity Low_complexity 1 51 0 384 217 19 47 chr9 6057646 6057752 -111804875 - Charlie7 DNA MER1_type -2507 105 3 268 269 60 0 chr9 6058173 6058240 -111804387 - MIR3 SINE MIR -49 159 89 1993 98 34 0 chr9 6059016 6059311 -111803316 + AluSx SINE Alu 1 305 -7 233 217 22 0 chr9 6059428 6059474 -111803153 + L3 LINE CR1 1524 1570 -7 761 178 55 18 chr9 6059944 6060107 -111802520 - MIR SINE MIR -3 259 91 24 53 0 0 chr9 6061824 6061862 -111800765 + GC_rich Low_complexity Low_complexity 1 38 0 22 89 0 0 chr9 6061915 6061960 -111800667 + GC_rich Low_complexity Low_complexity 1 45 0 206 224 0 20 chr9 6062142 6062191 -111800436 + G-rich Low_complexity Low_complexity 2 49 0 428 168 193 0 chr9 6063717 6063836 -111798791 - MIR SINE MIR 0 262 121 316 271 81 27 chr9 6064129 6064146 -111798481 - L1ME4a LINE L1 -11 6110 6095 2236 105 10 3 chr9 6064146 6064451 -111798176 + AluSq SINE Alu 1 307 -6 316 271 81 27 chr9 6064451 6064654 -111797973 - L1ME4a LINE L1 -26 6095 5878 1980 125 10 3 chr9 6069668 6069963 -111792664 - AluJb SINE Alu -15 297 1 1592 151 69 7 chr9 6070035 6070340 -111792287 + L1MB8 LINE L1 5855 6178 0 213 270 0 16 chr9 6070398 6070461 -111792166 - MER5A DNA MER1_type -1 188 127 226 340 46 46 chr9 6070485 6070638 -111791989 + MIR3 SINE MIR 17 169 -39 2277 99 3 13 chr9 6070698 6071010 -111791617 - AluSc SINE Alu 0 309 1 2289 98 0 0 chr9 6071473 6071760 -111790867 + AluSc SINE Alu 1 287 -22 339 344 38 38 chr9 6071801 6071984 -111790643 + MER5A DNA MER1_type 7 189 0 2354 122 0 0 chr9 6072037 6072349 -111790278 - AluSx SINE Alu 0 312 1 21 0 0 0 chr9 6072423 6072444 -111790183 + AT_rich Low_complexity Low_complexity 1 21 0 553 192 54 42 chr9 6072456 6072630 -111789997 + L1ME LINE L1 5395 5575 -589 2344 80 0 43 chr9 6072634 6072960 -111789667 + AluSx SINE Alu 1 312 0 2466 77 0 0 chr9 6073007 6073306 -111789321 + AluSc SINE Alu 1 299 -10 294 308 27 104 chr9 6073502 6073801 -111788826 - L2 LINE L2 -193 3079 2804 3112 92 11 9 chr9 6073812 6074259 -111788368 + LTR7 LTR ERV1 1 448 -2 6393 130 30 65 chr9 6074261 6075992 -111786635 + HERVH LTR ERV1 1 1797 -5916 1029 199 35 87 chr9 6076851 6077038 -111785589 + L1MC5 LINE L1 6876 7002 -959 1729 165 22 41 chr9 6077038 6077354 -111785273 - AluJo SINE Alu -2 310 1 1029 199 35 87 chr9 6077354 6077575 -111785052 + L1MC5 LINE L1 7002 7233 -728 656 280 213 17 chr9 6077678 6078081 -111784546 + LTR50 LTR ERVL 8 489 -306 517 279 49 11 chr9 6078081 6078264 -111784363 + LTR33A LTR ERVL 332 521 -2 3578 212 74 30 chr9 6078328 6079413 -111783214 - L1ME1 LINE L1 -5 6161 4995 2206 103 0 7 chr9 6079413 6079695 -111782932 + AluSx SINE Alu 2 281 -31 3578 212 74 30 chr9 6079695 6079980 -111782647 - L1ME1 LINE L1 -1171 4995 4724 21 36 0 0 chr9 6080298 6080326 -111782301 + AT_rich Low_complexity Low_complexity 1 28 0 569 248 33 8 chr9 6080740 6080861 -111781766 - L2 LINE L2 0 3313 3190 2239 86 41 0 chr9 6081260 6081550 -111781077 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr9 6081858 6081879 -111780748 + AT_rich Low_complexity Low_complexity 1 21 0 2413 97 3 0 chr9 6081970 6082280 -111780347 + AluSx SINE Alu 2 312 0 1796 88 0 0 chr9 6082291 6082518 -111780109 + AluY SINE Alu 85 311 0 338 305 117 15 chr9 6082904 6083101 -111779526 - L1MC4 LINE L1 -552 7490 7274 344 205 25 57 chr9 6083110 6083232 -111779395 - L1MC4 LINE L1 -827 7215 7098 205 171 0 0 chr9 6083346 6083387 -111779240 + T-rich Low_complexity Low_complexity 3 43 0 320 169 34 0 chr9 6083389 6083448 -111779179 - LTR40a LTR ERVL -2 517 457 250 356 0 0 chr9 6083481 6083540 -111779087 + C-rich Low_complexity Low_complexity 1 59 0 1383 209 72 70 chr9 6083652 6084053 -111778574 - LTR40a LTR ERVL -95 424 23 867 286 133 29 chr9 6084107 6084484 -111778143 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6084630 6084778 -111777849 + L1M4 LINE L1 3792 3943 -2203 373 256 171 18 chr9 6084923 6085087 -111777540 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6085101 6085224 -111777403 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6085254 6085429 -111777198 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6085586 6085847 -111776780 - AluSq SINE Alu -4 299 1 2376 74 0 36 chr9 6085928 6086237 -111776390 + AluY SINE Alu 1 298 -13 1718 120 32 0 chr9 6086333 6086583 -111776044 - AluSc SINE Alu -16 293 36 921 195 16 16 chr9 6086887 6087072 -111775555 - AluJo SINE Alu -7 305 121 27 49 0 0 chr9 6087408 6087449 -111775178 + AT_rich Low_complexity Low_complexity 1 41 0 2196 113 0 31 chr9 6087660 6087978 -111774649 + AluSx SINE Alu 3 310 -2 7172 187 132 8 chr9 6088104 6089514 -111773113 + L1PA13 LINE L1 1 1585 -5202 5868 107 53 2 chr9 6089517 6090814 -111771813 + L1PA13 LINE L1 4817 6163 0 1042 135 53 6 chr9 6091625 6091795 -111770832 - L1PB3 LINE L1 -1 6869 6692 12613 235 62 65 chr9 6092043 6093450 -111769177 - L1PB3 LINE L1 -164 6706 5296 2104 134 3 3 chr9 6093450 6093757 -111768870 - AluSq SINE Alu -6 307 1 12613 235 62 65 chr9 6093757 6095077 -111767550 - L1PB3 LINE L1 -1574 5296 3973 2006 133 0 44 chr9 6095077 6095394 -111767233 - AluSx SINE Alu -9 303 1 12613 235 62 65 chr9 6095394 6097798 -111764829 - L1PB3 LINE L1 -2897 3973 2682 2193 122 20 0 chr9 6097798 6098102 -111764525 - AluSx SINE Alu -2 310 1 12613 235 62 65 chr9 6098102 6100774 -111761853 - L1PB3 LINE L1 -4188 2682 3 255 384 58 0 chr9 6101254 6101340 -111761287 - MIR SINE MIR -90 118 28 1683 87 4 13 chr9 6101514 6101745 -111760882 + AluSq SINE Alu 44 272 -41 3393 60 2 10 chr9 6101847 6102262 -111760365 + L1PA5 LINE L1 5743 6154 0 379 231 161 0 chr9 6102503 6102633 -111759994 - L1MC5 LINE L1 -48 7913 7763 602 180 9 0 chr9 6103339 6103450 -111759177 - Charlie4 DNA MER1_type -34 1927 1816 391 298 7 64 chr9 6104138 6104279 -111758348 + MLT1I LTR MaLR 22 154 -255 198 167 0 0 chr9 6104281 6104317 -111758310 + CT-rich Low_complexity Low_complexity 2 37 0 728 171 0 0 chr9 6104327 6104432 -111758195 - FLAM_C SINE Alu -21 122 18 739 266 41 18 chr9 6104469 6104691 -111757936 + MLT1I LTR MaLR 184 450 0 315 235 12 12 chr9 6104738 6104819 -111757808 - MIR SINE MIR -110 152 72 180 225 25 0 chr9 6105171 6105211 -111757416 + MER5B DNA MER1_type 13 53 -125 237 311 76 98 chr9 6105421 6105698 -111756929 + L2 LINE L2 2924 3194 -78 21 0 0 0 chr9 6105726 6105747 -111756880 + GC_rich Low_complexity Low_complexity 1 21 0 546 242 95 38 chr9 6106120 6106331 -111756296 - L2 LINE L2 0 3313 3091 180 0 0 0 chr9 6106640 6106660 -111755967 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1101 216 24 111 chr9 6106668 6107039 -111755588 + MSTD LTR MaLR 1 339 -57 514 147 10 10 chr9 6107039 6107141 -111755486 + CT-rich Low_complexity Low_complexity 3 104 0 5204 91 11 14 chr9 6107154 6107850 -111754777 - L1PA13 LINE L1 -14 6149 5456 507 100 0 0 chr9 6107851 6107921 -111754706 + MSTD LTR MaLR 388 457 0 1737 157 0 35 chr9 6108069 6108355 -111754272 - AluJo SINE Alu -36 276 1 745 16 63 0 chr9 6108546 6108651 -111753976 - L1P1 LINE L1 -671 5484 5374 271 0 51 0 chr9 6108990 6109029 -111753598 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 7584 22 0 0 chr9 6109033 6109891 -111752736 - L1PA3 LINE L1 0 6155 5298 * 41614 71 6 2 chr9 6109886 6115254 -111747373 - L1P LINE L1 -756 5390 5 574 267 37 19 chr9 6117292 6117453 -111745174 - MIR SINE MIR -93 169 6 359 262 19 19 chr9 6117731 6117838 -111744789 - MIR SINE MIR -26 236 130 365 280 107 33 chr9 6119113 6119263 -111743364 + LTR16C LTR ERVL 322 482 -9 1318 81 27 27 chr9 6120059 6120244 -111742383 + AluY SINE Alu 1 185 -126 1639 170 3 39 chr9 6120856 6121168 -111741459 + AluJo SINE Alu 1 301 -11 2032 95 4 0 chr9 6121181 6121444 -111741183 - AluSq SINE Alu -6 307 44 1482 208 72 67 chr9 6121681 6122100 -111740527 - LTR40a LTR ERVL -76 443 23 867 286 133 29 chr9 6122154 6122531 -111740096 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6122677 6122825 -111739802 + L1M4 LINE L1 3792 3943 -2203 23 68 0 0 chr9 6122877 6122921 -111739706 + AT_rich Low_complexity Low_complexity 1 44 0 373 256 171 18 chr9 6122970 6123134 -111739493 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6123148 6123271 -111739356 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6123301 6123476 -111739151 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6123633 6123894 -111738733 - AluSq SINE Alu -4 299 1 2059 105 3 37 chr9 6123975 6124305 -111738322 + AluY SINE Alu 1 320 0 2335 93 3 0 chr9 6124535 6124837 -111737790 + AluY SINE Alu 1 303 -8 235 248 86 68 chr9 6125454 6125517 -111737110 + MER103 DNA DNA 11 78 -88 2224 118 0 0 chr9 6125517 6125821 -111736806 + AluSx SINE Alu 1 304 -8 235 248 86 68 chr9 6125821 6125874 -111736753 + MER103 DNA DNA 78 129 -37 220 313 163 0 chr9 6126212 6126359 -111736268 + L2 LINE L2 1918 2088 -1226 3738 110 12 2 chr9 6126636 6127144 -111735483 + LTR10D LTR ERV1 1 513 0 1616 267 42 56 chr9 6127170 6128226 -111734401 + HERVI LTR ERV1 23 1139 -6646 829 219 16 37 chr9 6128340 6128367 -111734260 - L1P LINE L1 -2652 3494 3468 2061 86 23 36 chr9 6128367 6128670 -111733957 + AluY SINE Alu 1 299 -12 829 219 16 37 chr9 6128670 6128884 -111733743 - L1P LINE L1 -2678 3468 3258 345 202 218 24 chr9 6128885 6129009 -111733618 + LTR50 LTR ERVL 586 733 -62 216 266 16 0 chr9 6129055 6129119 -111733508 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2273 112 3 0 chr9 6129150 6129454 -111733173 - AluSc SINE Alu -4 305 1 1139 213 46 59 chr9 6129651 6129956 -111732671 - LTR8A LTR ERV1 0 727 427 316 271 81 27 chr9 6130995 6131198 -111731429 + L1ME4a LINE L1 5878 6095 -26 2236 105 10 3 chr9 6131198 6131503 -111731124 - AluSq SINE Alu -6 307 1 316 271 81 27 chr9 6131503 6131520 -111731107 + L1ME4a LINE L1 6095 6110 -11 428 168 193 0 chr9 6131813 6131932 -111730695 + MIR SINE MIR 121 262 0 502 319 101 4 chr9 6133582 6133839 -111728788 + MLT1J LTR MaLR 228 509 -2 1347 265 23 8 chr9 6133854 6134205 -111728422 - LTR16A LTR ERVL -6 444 89 437 295 36 36 chr9 6134852 6135018 -111727609 + LTR67 LTR ERVL 23 188 -369 534 241 13 57 chr9 6135161 6135319 -111727308 + LTR67 LTR ERVL 393 543 -14 1040 165 41 28 chr9 6135670 6135888 -111726739 - AluJo SINE Alu -5 307 87 1971 138 13 7 chr9 6135985 6136289 -111726338 - AluJb SINE Alu -6 306 1 308 253 48 0 chr9 6136791 6136874 -111725753 + MLT1H LTR MaLR 1 87 -462 1169 191 9 23 chr9 6136881 6137101 -111725526 - MER20 DNA MER1_type 0 219 3 331 183 73 12 chr9 6137401 6137483 -111725144 + MLT1H LTR MaLR 463 549 0 1080 201 44 97 chr9 6137709 6138122 -111724505 - L1M4 LINE L1 -832 5314 4924 258 269 106 14 chr9 6138213 6138354 -111724273 + L1ME4a LINE L1 5967 6120 -1 2120 131 0 0 chr9 6138361 6138667 -111723960 - AluSq SINE Alu 0 306 1 4104 126 76 35 chr9 6139472 6140221 -111722406 + LTR1 LTR ERV1 6 785 0 1317 177 45 78 chr9 6140472 6140818 -111721809 + LTR37A LTR ERV1 18 349 -77 1739 167 38 0 chr9 6140818 6141106 -111721521 + AluJo SINE Alu 1 299 -13 1317 177 45 78 chr9 6141106 6141182 -111721445 + LTR37A LTR ERV1 349 426 0 430 186 150 35 chr9 6142063 6142176 -111720451 - FLAM_C SINE Alu -7 126 1 1949 108 7 51 chr9 6142471 6142803 -111719824 + AluSg SINE Alu 1 319 0 2283 103 3 0 chr9 6143033 6143335 -111719292 + AluY SINE Alu 1 303 -8 235 248 86 68 chr9 6143952 6144015 -111718612 + MER103 DNA DNA 11 78 -88 2224 118 0 0 chr9 6144015 6144319 -111718308 + AluSx SINE Alu 1 304 -8 235 248 86 68 chr9 6144319 6144372 -111718255 + MER103 DNA DNA 78 129 -37 220 313 163 0 chr9 6144710 6144857 -111717770 + L2 LINE L2 1918 2088 -1226 3742 110 12 2 chr9 6145134 6145642 -111716985 + LTR10D LTR ERV1 1 513 0 1630 264 56 55 chr9 6145668 6146740 -111715887 + HERVI LTR ERV1 23 1171 -6614 35450 178 10 19 chr9 6147070 6153758 -111708869 + HERVI LTR ERV1 1144 7769 -16 3774 106 10 8 chr9 6153774 6154286 -111708341 + LTR10D LTR ERV1 1 513 0 534 306 124 6 chr9 6154291 6154605 -111708022 - HAL1 LINE L1 -431 2076 1726 360 344 51 28 chr9 6154607 6154822 -111707805 + MLT1J LTR MaLR 1 220 -291 221 125 0 42 chr9 6155179 6155227 -111707400 + (TAAAAA)n Simple_repeat Simple_repeat 1 46 0 679 325 94 22 chr9 6156049 6156452 -111706175 + L2 LINE L2 2181 2612 -702 385 286 0 0 chr9 6156511 6156609 -111706018 + L1MC4a LINE L1 5746 5843 -1965 2296 166 21 23 chr9 6156692 6157137 -111705490 + MSTB1 LTR MaLR 1 396 0 622 241 28 47 chr9 6157290 6157502 -111705125 - L1MC5 LINE L1 -48 7913 7706 926 223 9 38 chr9 6157503 6157714 -111704913 + MER3 DNA MER1_type 5 209 0 795 209 12 31 chr9 6157748 6157933 -111704694 + AluJo SINE Alu 127 312 0 400 209 12 0 chr9 6158032 6158118 -111704509 - AluJb SINE Alu -5 307 221 1107 140 12 6 chr9 6158118 6158289 -111704338 - AluJb SINE Alu -124 188 17 4724 128 44 33 chr9 6158649 6159462 -111703165 - L1PA16 LINE L1 -5 6161 5340 7241 215 35 11 chr9 6159463 6160673 -111701954 - L1 LINE L1 -959 5187 3925 2236 139 39 28 chr9 6160673 6161033 -111701594 + THE1B LTR MaLR 1 364 0 7241 215 35 11 chr9 6161033 6161459 -111701168 - L1 LINE L1 -2221 3925 3511 2148 55 0 8 chr9 6161470 6161758 -111700869 - AluY SINE Alu 0 312 27 2168 100 4 4 chr9 6161862 6162166 -111700461 - AluSq SINE Alu 0 308 5 2181 84 28 0 chr9 6162170 6162455 -111700172 + L1PB1 LINE L1 5858 6150 -1 7985 166 135 15 chr9 6162627 6164194 -111698433 - MER52A LTR ERV1 0 1755 1 431 367 25 17 chr9 6165225 6165462 -111697165 - MIR SINE MIR 0 262 24 1905 190 36 8 chr9 6165821 6166267 -111696360 - MER89 LTR ERV1 0 559 1 424 149 7 41 chr9 6166853 6166989 -111695638 - MER53 DNA DNA 0 189 3 210 167 0 0 chr9 6167147 6167183 -111695444 + MER91 DNA MER1_type 13 48 -92 422 114 0 29 chr9 6168114 6168184 -111694443 - L1PB4 LINE L1 -2 6154 6087 581 309 82 0 chr9 6169488 6169708 -111692919 + MIR SINE MIR 23 260 -2 1492 163 63 11 chr9 6169762 6170032 -111692595 + AluJo SINE Alu 3 286 -26 2403 90 0 6 chr9 6170034 6170345 -111692282 + AluY SINE Alu 1 309 -2 24 53 0 0 chr9 6170346 6170384 -111692243 + AT_rich Low_complexity Low_complexity 1 38 0 1187 197 165 76 chr9 6170823 6171358 -111691269 + LTR50 LTR ERVL 11 702 -93 192 40 0 0 chr9 6171358 6171383 -111691244 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1187 197 165 76 chr9 6171383 6171478 -111691149 + LTR50 LTR ERVL 702 787 -8 1158 218 40 0 chr9 6171763 6171988 -111690639 - L1PB4 LINE L1 -2 6154 5921 432 271 160 27 chr9 6172239 6172427 -111690200 - MIR SINE MIR -2 260 48 27 0 0 0 chr9 6172459 6172486 -111690141 + AT_rich Low_complexity Low_complexity 1 27 0 3475 76 32 5 chr9 6172602 6172642 -111689985 - MLT2A1 LTR ERVL 0 444 407 225 0 0 0 chr9 6172642 6172667 -111689960 + (TA)n Simple_repeat Simple_repeat 2 26 0 3475 76 32 5 chr9 6172667 6173058 -111689569 - MLT2A1 LTR ERVL -37 407 1 41354 75 10 5 chr9 6173059 6178797 -111683830 - ERVL-A1 LTR ERVL -8 5756 33 1665 40 0 5 chr9 6178798 6178998 -111683629 - MLT2A1 LTR ERVL -244 200 2 972 179 19 61 chr9 6180125 6180337 -111682290 + LTR8A LTR ERV1 34 236 -491 1173 167 13 107 chr9 6180342 6180641 -111681986 - LTR27 LTR ERV1 -2 634 364 261 132 0 0 chr9 6180723 6180761 -111681866 - MER61B LTR ERV1 -286 139 102 * 925 174 11 17 chr9 6180738 6180916 -111681711 - LTR28 LTR ERV1 -842 178 2 1051 140 22 22 chr9 6180917 6181095 -111681532 + LTR8A LTR ERV1 233 410 -317 239 167 0 0 chr9 6181324 6181360 -111681267 - L1PB4 LINE L1 -297 5854 5819 2470 84 0 3 chr9 6181360 6181670 -111680957 - AluY SINE Alu -2 309 1 2331 131 8 11 chr9 6181696 6182055 -111680572 - THE1B LTR MaLR -1 363 6 1807 256 43 4 chr9 6182079 6182572 -111680055 - L1M4 LINE L1 -1018 5128 4617 2155 123 0 0 chr9 6182583 6182875 -111679752 - AluSg SINE Alu -18 292 1 337 282 21 18 chr9 6183255 6183381 -111679246 - MIR SINE MIR -36 172 45 1927 132 40 0 chr9 6184415 6184711 -111677916 + AluSx SINE Alu 5 312 0 1519 171 38 3 chr9 6184894 6185186 -111677441 - L1MB7 LINE L1 0 6184 5883 233 195 12 24 chr9 6185491 6185573 -111677054 + (TAA)n Simple_repeat Simple_repeat 1 81 0 320 267 23 0 chr9 6186189 6186275 -111676352 - MER69 DNA AcHobo -1727 799 712 255 216 165 31 chr9 6186284 6186381 -111676246 - MLT1F1 LTR MaLR -284 283 174 27 0 0 0 chr9 6187686 6187713 -111674914 + AT_rich Low_complexity Low_complexity 1 27 0 725 191 34 121 chr9 6187723 6187925 -111674702 + L1MC5 LINE L1 7452 7601 -360 1813 154 21 7 chr9 6187925 6188211 -111674416 + AluJo SINE Alu 1 290 -22 725 191 34 121 chr9 6188211 6188422 -111674205 + L1MC5 LINE L1 7601 7829 -132 195 42 0 0 chr9 6190314 6190338 -111672289 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 4289 158 48 32 chr9 6190347 6190753 -111671874 + L1MB4 LINE L1 5174 5572 -608 2225 100 0 3 chr9 6190753 6191044 -111671583 + AluSc SINE Alu 1 290 -19 4289 158 48 32 chr9 6191044 6191371 -111671256 + L1MB4 LINE L1 5572 5927 -253 2617 173 7 9 chr9 6191371 6191798 -111670829 - MSTB LTR MaLR 0 426 1 4289 158 48 32 chr9 6191798 6191982 -111670645 + L1MB4 LINE L1 5927 6107 -73 493 325 75 9 chr9 6192059 6192271 -111670356 - MIR SINE MIR -31 231 6 25 0 0 0 chr9 6192691 6192716 -111669911 + AT_rich Low_complexity Low_complexity 1 25 0 240 69 0 0 chr9 6193573 6193602 -111669025 + U2 snRNA snRNA 1 29 -159 1187 252 35 22 chr9 6193630 6194031 -111668596 + L1MC5 LINE L1 6968 7373 -588 442 299 25 49 chr9 6194083 6194287 -111668340 + L1ME3A LINE L1 5963 6161 -9 2766 174 72 30 chr9 6194621 6194633 -111667994 + L1MB5 LINE L1 5566 5576 -598 1681 118 4 12 chr9 6194633 6194878 -111667749 + AluSx SINE Alu 38 280 -32 297 0 0 0 chr9 6194879 6194912 -111667715 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2766 174 72 30 chr9 6194912 6195465 -111667162 + L1MB5 LINE L1 5575 6157 -17 5066 170 6 20 chr9 6195485 6196459 -111666168 + L1P LINE L1 3037 3996 -2150 590 284 83 31 chr9 6196788 6197017 -111665610 - MIR SINE MIR -21 241 1 196 247 62 49 chr9 6197017 6197050 -111665577 - MER5A DNA MER1_type -148 41 8 682 226 104 28 chr9 6197744 6197956 -111664671 + MLT1H LTR MaLR 3 230 -319 375 182 28 114 chr9 6197997 6198161 -111664466 + MLT1H LTR MaLR 381 536 0 249 33 0 0 chr9 6199217 6199247 -111663380 + (TG)n Simple_repeat Simple_repeat 1 30 0 1739 149 3 11 chr9 6199258 6199540 -111663087 - AluJb SINE Alu -32 280 1 189 345 9 52 chr9 6200567 6200683 -111661944 + L3 LINE CR1 1458 1568 -9 28076 35 19 1 chr9 6200841 6206844 -111655783 + L1PA2 LINE L1 4 6155 0 668 239 25 50 chr9 6207110 6207311 -111655316 - MIR SINE MIR -2 260 65 203 152 0 0 chr9 6208536 6208569 -111654058 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1963 130 52 30 chr9 6208670 6209000 -111653627 - MER1B DNA MER1_type 0 337 1 283 100 0 0 chr9 6209075 6209115 -111653512 - MLT1I LTR MaLR -272 137 98 311 273 109 0 chr9 6209124 6209307 -111653320 + L1MEc LINE L1 1599 1801 -4595 25 0 0 0 chr9 6209389 6209414 -111653213 + AT_rich Low_complexity Low_complexity 1 25 0 336 188 44 125 chr9 6209457 6209617 -111653010 + L1M4 LINE L1 4540 4686 -1460 22 70 0 0 chr9 6209842 6209885 -111652742 + AT_rich Low_complexity Low_complexity 1 43 0 473 183 83 33 chr9 6209923 6210043 -111652584 - L1MC5 LINE L1 -48 7913 7788 8986 152 29 4 chr9 6210043 6211505 -111651122 - ERVL-B1 LTR ERVL -2210 3554 2057 3205 172 66 53 chr9 6211532 6212566 -111650061 - MER21A LTR ERV1 -19 912 15 10640 187 43 18 chr9 6212601 6213355 -111649272 - ERVL-B1 LTR ERVL -3711 2053 1320 1202 210 78 49 chr9 6213355 6213740 -111648887 + MSTD LTR MaLR 1 396 0 10640 187 43 18 chr9 6213740 6214369 -111648258 - ERVL-B1 LTR ERVL -4444 1320 709 2435 131 31 5 chr9 6214369 6214757 -111647870 + MER48 LTR ERV1 1 398 0 10640 187 43 18 chr9 6214757 6215373 -111647254 - ERVL-B1 LTR ERVL -5055 709 2 1855 181 151 54 chr9 6215380 6215844 -111646783 - MLT2B1 LTR ERVL -6 514 6 1036 103 19 0 chr9 6215844 6216000 -111646627 + L1MB8 LINE L1 5737 5895 -283 322 305 59 0 chr9 6216232 6216350 -111646277 + L2 LINE L2 1879 2003 -1311 265 344 84 7 chr9 6216383 6216537 -111646090 - MLT1L LTR MaLR -67 548 383 11442 190 30 36 chr9 6216596 6218248 -111644379 + L1MB3 LINE L1 266 1926 -4456 2779 112 57 69 chr9 6218248 6218773 -111643854 - LTR44 LTR ERV1 0 519 1 2124 138 0 0 chr9 6218780 6219091 -111643536 - AluSx SINE Alu -1 311 1 11442 190 30 36 chr9 6219091 6219716 -111642911 + L1MB3 LINE L1 1932 2559 -3823 1922 149 7 3 chr9 6219716 6220005 -111642622 - AluJb SINE Alu -20 292 3 11442 190 30 36 chr9 6220005 6220727 -111641900 + L1MB3 LINE L1 2559 3284 -3098 1981 165 7 0 chr9 6220727 6221036 -111641591 + AluJb SINE Alu 1 311 -1 11442 190 30 36 chr9 6221036 6223220 -111639407 + L1MB3 LINE L1 3284 5424 -958 1720 164 0 34 chr9 6223357 6223506 -111639121 - AluJo SINE Alu -30 282 146 243 0 0 0 chr9 6223506 6223533 -111639094 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 1720 164 0 34 chr9 6223533 6223675 -111638952 - AluJo SINE Alu -166 146 1 4527 165 31 39 chr9 6224144 6225106 -111637521 + L1MB3 LINE L1 5424 6374 -45 2271 98 0 10 chr9 6225106 6225411 -111637216 + AluSx SINE Alu 1 302 -10 4527 165 31 39 chr9 6225411 6225455 -111637172 + L1MB3 LINE L1 6374 6417 -2 679 264 41 86 chr9 6225627 6226207 -111636420 - L1MEd LINE L1 -4871 1248 695 180 152 0 0 chr9 6226290 6226323 -111636304 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 375 336 69 83 chr9 6226736 6227231 -111635396 + L2 LINE L2 2589 3073 -199 2178 123 3 7 chr9 6227231 6227540 -111635087 - AluSx SINE Alu -4 308 1 375 336 69 83 chr9 6227540 6227738 -111634889 + L2 LINE L2 3073 3272 0 207 200 0 0 chr9 6228154 6228189 -111634438 + (TG)n Simple_repeat Simple_repeat 2 36 0 299 211 0 0 chr9 6228401 6228472 -111634155 - L1ME LINE L1 -303 5818 5748 837 240 159 0 chr9 6228476 6228684 -111633943 - MIR SINE MIR -21 241 1 631 280 13 0 chr9 6228775 6228925 -111633702 + MIR SINE MIR 15 166 -96 315 49 0 0 chr9 6229042 6229083 -111633544 + (A)n Simple_repeat Simple_repeat 1 41 0 254 234 106 0 chr9 6229514 6229608 -111633019 - MIR SINE MIR 0 262 159 216 0 0 0 chr9 6229647 6229671 -111632956 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 381 198 242 0 chr9 6229673 6229764 -111632863 - FLAM_A SINE Alu -17 116 4 240 273 26 39 chr9 6229764 6229841 -111632786 - MIR SINE MIR -145 117 42 211 262 0 0 chr9 6229907 6229949 -111632678 - MIR3 SINE MIR -17 191 150 317 213 12 12 chr9 6230345 6230425 -111632202 - MER116 DNA Mariner 0 80 1 1122 164 0 55 chr9 6232048 6232091 -111630536 + AluJo SINE Alu 91 135 -177 2557 43 0 3 chr9 6232091 6232391 -111630236 + AluY SINE Alu 1 299 -12 1122 164 0 55 chr9 6232391 6232566 -111630061 + AluJo SINE Alu 135 297 -15 652 242 0 0 chr9 6232768 6232896 -111629731 + FLAM_A SINE Alu 3 130 -3 236 281 36 36 chr9 6234331 6234470 -111628157 + HAL1b LINE L1 123 261 -1087 408 213 36 169 chr9 6234576 6234801 -111627826 - MLT1L LTR MaLR 0 615 421 351 308 119 6 chr9 6234936 6235095 -111627532 + MLT1J LTR MaLR 2 178 -333 1093 200 60 113 chr9 6235104 6235474 -111627153 + MLT2D LTR ERVL 1 350 -64 239 136 0 85 chr9 6235521 6235580 -111627047 + MLT2D LTR ERVL 464 517 -3 304 232 199 33 chr9 6235671 6235904 -111626723 + MLT1L LTR MaLR 240 509 -2 588 305 86 12 chr9 6235924 6236180 -111626447 - MLT1L LTR MaLR -340 275 1 2616 125 24 5 chr9 6236697 6237114 -111625513 - LTR24C LTR ERV1 -210 425 1 853 332 42 30 chr9 6237312 6237746 -111624881 + L1M3a LINE L1 14 452 -5503 16711 32 1 1 chr9 6238570 6240618 -111622009 + L1P LINE L1 1547 3595 -2551 1034 162 67 46 chr9 6241510 6241579 -111621048 + L1MA8 LINE L1 6002 6068 -223 2500 66 3 0 chr9 6241579 6241881 -111620746 + AluY SINE Alu 1 303 -8 1034 162 67 46 chr9 6241881 6242037 -111620590 + L1MA8 LINE L1 6068 6237 -54 267 31 0 0 chr9 6242037 6242069 -111620558 + (TA)n Simple_repeat Simple_repeat 1 32 0 1034 162 67 46 chr9 6242069 6242126 -111620501 + L1MA8 LINE L1 6237 6291 0 460 356 56 0 chr9 6242510 6242690 -111619937 + L2 LINE L2 2811 3000 -313 1752 48 5 0 chr9 6242704 6242910 -111619717 - AluY SINE Alu -13 298 92 333 322 59 8 chr9 6243032 6243150 -111619477 + MIR3 SINE MIR 10 133 -75 2269 105 7 0 chr9 6243510 6243816 -111618811 + AluSp SINE Alu 1 308 -5 366 183 0 0 chr9 6244003 6244074 -111618553 + (CA)n Simple_repeat Simple_repeat 2 72 0 193 259 65 111 chr9 6244150 6244258 -111618369 + MER5A DNA MER1_type 65 167 -22 285 222 43 103 chr9 6244345 6244462 -111618165 + MIR SINE MIR 71 180 -82 341 204 46 125 chr9 6244672 6244824 -111617803 - MER112 DNA MER1_type -1 259 120 2552 168 95 6 chr9 6244848 6245353 -111617274 - MER44D DNA MER2_type 0 605 1 491 138 38 0 chr9 6245581 6245661 -111616966 + Tigger7 DNA MER2_type 2357 2439 -48 389 365 28 38 chr9 6246132 6246385 -111616242 - MIR SINE MIR -2 260 8 308 281 94 23 chr9 6247511 6247639 -111614988 - MIR SINE MIR -20 242 106 212 267 0 40 chr9 6247851 6247926 -111614701 - L2 LINE L2 -6 3307 3236 * 328 233 165 0 chr9 6247922 6248025 -111614602 + MIR SINE MIR 13 132 -130 1077 90 0 0 chr9 6248135 6248269 -111614358 - AluSq/x SINE Alu -178 134 1 22 0 0 0 chr9 6248392 6248414 -111614213 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr9 6249784 6249826 -111612801 + AT_rich Low_complexity Low_complexity 1 42 0 505 321 65 11 chr9 6249884 6250068 -111612559 + MIR SINE MIR 1 194 -68 1532 145 4 4 chr9 6250662 6250890 -111611737 - AluSx SINE Alu -84 228 1 1585 137 8 16 chr9 6251038 6251293 -111611334 + AluSc SINE Alu 1 253 -56 191 257 119 79 chr9 6253407 6253508 -111609119 - MIR SINE MIR -147 115 11 482 247 100 32 chr9 6253714 6253924 -111608703 - MIR SINE MIR 0 262 38 4085 241 75 21 chr9 6254067 6255692 -111606935 + L1M3f LINE L1 539 2242 -4086 2250 128 88 7 chr9 6255692 6256100 -111606527 + L1MA4 LINE L1 5849 6289 -11 477 255 101 64 chr9 6256258 6256542 -111606085 + L1M3f LINE L1 3255 3527 -2801 1793 167 10 10 chr9 6256542 6256842 -111605785 + AluJo SINE Alu 1 300 -12 236 77 26 0 chr9 6256842 6256881 -111605746 + (TA)n Simple_repeat Simple_repeat 2 41 0 477 255 101 64 chr9 6256881 6257007 -111605620 + L1M3f LINE L1 3526 3672 -2656 800 177 6 55 chr9 6257021 6257202 -111605425 + MLT1D LTR MaLR 17 188 -317 2528 165 19 39 chr9 6257202 6257717 -111604910 + MLT1D LTR MaLR 1 505 0 40618 35 23 1 chr9 6257745 6263765 -111598862 - L1PA3 LINE L1 0 6155 3 475 275 105 18 chr9 6263870 6264204 -111598423 + L1M3f LINE L1 3802 4164 -2164 592 337 102 38 chr9 6264251 6264786 -111597841 - L2 LINE L2 -2 3270 2703 365 242 25 25 chr9 6265044 6265164 -111597463 + LTR33 LTR ERVL 402 521 0 518 276 19 26 chr9 6265174 6265330 -111597297 - L2 LINE L2 -596 2718 2564 1504 173 15 11 chr9 6265338 6265739 -111596888 + MER76 LTR ERV 1 466 -222 358 164 45 0 chr9 6265783 6265850 -111596777 + MER76 LTR ERV 590 659 -29 638 312 41 54 chr9 6265851 6266293 -111596334 - L2 LINE L2 -744 2570 2135 180 250 0 0 chr9 6266426 6266462 -111596165 + L2 LINE L2 3220 3255 -17 322 119 237 0 chr9 6266832 6266891 -111595736 - THE1B LTR MaLR 0 375 303 1027 146 0 0 chr9 6266893 6267074 -111595553 + AluSg/x SINE Alu 136 316 0 219 167 0 0 chr9 6267094 6267136 -111595491 + GA-rich Low_complexity Low_complexity 4 45 0 2098 116 0 0 chr9 6267149 6267451 -111595176 - THE1B LTR MaLR -62 302 1 286 323 222 35 chr9 6267658 6267856 -111594771 + MIR SINE MIR 20 254 -8 1321 174 0 21 chr9 6268646 6268882 -111593745 + AluJo SINE Alu 70 300 -12 202 267 0 0 chr9 6269237 6269282 -111593345 + (CAG)n Simple_repeat Simple_repeat 3 47 0 628 213 90 62 chr9 6269503 6269714 -111592913 + MIR SINE MIR 40 256 -6 1591 151 7 60 chr9 6270102 6270422 -111592205 - AluJb SINE Alu 0 304 1 264 353 88 0 chr9 6270663 6270799 -111591828 - MIR3 SINE MIR -5 203 56 235 286 0 16 chr9 6271137 6271200 -111591427 - MIR SINE MIR -127 81 20 1688 148 20 67 chr9 6271638 6272044 -111590583 - L1MB8 LINE L1 -6 6172 5786 1456 173 24 0 chr9 6272047 6272342 -111590285 - L1MB8 LINE L1 -538 5646 5345 1186 277 54 12 chr9 6272349 6272851 -111589776 - L1M4c LINE L1 -4738 1646 1124 1625 256 113 35 chr9 6272855 6273389 -111589238 + L1ME LINE L1 89 580 -5500 2064 144 3 0 chr9 6273389 6273680 -111588947 + AluSx SINE Alu 1 292 -20 1625 256 113 35 chr9 6273680 6274326 -111588301 + L1ME LINE L1 580 1362 -4718 2833 6 15 3 chr9 6274349 6274677 -111587950 + L1PA3 LINE L1 5824 6155 0 183 42 0 0 chr9 6274745 6274769 -111587858 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 334 215 47 0 chr9 6274777 6274884 -111587743 + L1ME LINE L1 1403 1514 -4566 2495 191 57 78 chr9 6275496 6276202 -111586425 - LTR8 LTR ERV1 0 691 1 1939 135 49 0 chr9 6277395 6277683 -111584944 + AluSx SINE Alu 5 306 -6 283 282 18 0 chr9 6278184 6278294 -111584333 + LTR33 LTR ERVL 4 115 -406 573 238 42 0 chr9 6278707 6278850 -111583777 + MLT1D LTR MaLR 355 503 -2 1629 115 125 16 chr9 6279897 6280202 -111582425 - MER44D DNA MER2_type -1 608 1 3676 162 19 0 chr9 6281384 6282032 -111580595 + L1MB5 LINE L1 5515 6174 0 4356 213 36 30 chr9 6282064 6282452 -111580175 - L1M4 LINE L1 -649 6023 5639 1578 194 40 0 chr9 6282452 6282730 -111579897 + AluJb SINE Alu 9 297 -15 4356 213 36 30 chr9 6282730 6283709 -111578918 - L1M4 LINE L1 -1033 5639 4648 207 0 0 0 chr9 6283709 6283732 -111578895 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4356 213 36 30 chr9 6283732 6283799 -111578828 - L1M4 LINE L1 -2024 4648 4583 29825 94 9 8 chr9 6283803 6289227 -111573400 + L1PA7 LINE L1 1377 7588 -4 203 0 37 0 chr9 6289253 6289280 -111573347 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1346 245 6 14 chr9 6289288 6289635 -111572992 - L1M4 LINE L1 -2046 4598 4255 4432 235 54 43 chr9 6289638 6291634 -111570993 - L1M4 LINE L1 -4656 1990 5 476 343 78 12 chr9 6291659 6291980 -111570647 - L1MEc LINE L1 -3404 2811 2470 1529 188 18 25 chr9 6291991 6292309 -111570318 - AluJo SINE Alu 0 319 4 3041 93 32 5 chr9 6292310 6292742 -111569885 - MLT2A1 LTR ERVL 0 444 1 550 322 70 36 chr9 6292751 6293251 -111569376 - L1MEc LINE L1 -4016 2380 1864 234 0 0 0 chr9 6294153 6294179 -111568448 + (A)n Simple_repeat Simple_repeat 1 26 0 2332 64 0 3 chr9 6294310 6294619 -111568008 + AluY SINE Alu 1 308 0 612 242 80 58 chr9 6294650 6294988 -111567639 + L1MEc LINE L1 2179 2492 -3723 1199 165 5 15 chr9 6296658 6296885 -111565742 - AluJo SINE Alu 0 309 85 1967 127 0 43 chr9 6296997 6297296 -111565331 + AluSq SINE Alu 7 292 -21 3261 136 71 43 chr9 6297423 6298101 -111564526 - LTR8A LTR ERV1 -30 697 1 521 184 31 17 chr9 6299122 6299482 -111563145 + (TA)n Simple_repeat Simple_repeat 1 365 0 421 301 35 60 chr9 6300047 6300246 -111562381 + MIR SINE MIR 2 195 -67 355 240 123 68 chr9 6300315 6300461 -111562166 - MIR SINE MIR -75 187 34 228 67 0 0 chr9 6301279 6301309 -111561318 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1762 178 21 0 chr9 6301311 6301592 -111561035 - AluJb SINE Alu -25 287 1 366 284 24 95 chr9 6303444 6303655 -111558972 - L1ME3A LINE L1 -1 6169 5974 595 280 111 18 chr9 6304256 6304588 -111558039 - MLT1L LTR MaLR 0 615 253 526 195 0 70 chr9 6305939 6306067 -111556560 + MIR SINE MIR 33 151 -57 1143 209 0 30 chr9 6306256 6306486 -111556141 - AluJb SINE Alu -9 303 81 1363 294 71 30 chr9 6306487 6306539 -111556088 - L1MEd LINE L1 -4865 1254 1206 1748 168 0 25 chr9 6306539 6306854 -111555773 - AluJo SINE Alu -5 307 1 1363 294 71 30 chr9 6306854 6307811 -111554816 - L1MEd LINE L1 -4913 1206 274 841 242 11 0 chr9 6308514 6308692 -111553935 + MIR SINE MIR 79 258 -4 717 231 81 0 chr9 6308692 6308865 -111553762 + AluJo SINE Alu 120 306 -6 1800 140 39 3 chr9 6309113 6309399 -111553228 + AluJo SINE Alu 1 296 -16 260 245 0 0 chr9 6309716 6309769 -111552858 - MIR SINE MIR -59 149 97 399 339 133 33 chr9 6310243 6310641 -111551986 - L2 LINE L2 -16 3256 2819 292 311 152 7 chr9 6311399 6311550 -111551077 + MIR SINE MIR 36 208 -54 431 358 33 30 chr9 6311584 6311916 -111550711 + L2 LINE L2 2559 2891 -423 4747 222 93 18 chr9 6312052 6313135 -111549492 - L1M4 LINE L1 -1825 4321 3321 231 88 0 0 chr9 6313135 6313169 -111549458 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4747 222 93 18 chr9 6313169 6313519 -111549108 - L1M4 LINE L1 -2825 3321 2999 1822 166 0 10 chr9 6313519 6313821 -111548806 - AluSx SINE Alu -13 299 1 4747 222 93 18 chr9 6313821 6314055 -111548572 - L1M4 LINE L1 -3147 2999 2528 1779 161 3 17 chr9 6314294 6314592 -111548035 + AluJb SINE Alu 1 294 -18 457 299 128 9 chr9 6315233 6315444 -111547183 - MIR SINE MIR -7 255 20 222 317 70 75 chr9 6315983 6316169 -111546458 - L2 LINE L2 -995 2319 2135 616 199 93 7 chr9 6316273 6316424 -111546203 - LTR53 LTR ERVL -61 458 295 453 159 0 0 chr9 6316771 6316840 -111545787 - AluJ/FLAM SINE Alu -243 69 1 1182 267 63 13 chr9 6316857 6317400 -111545227 - L1M4 LINE L1 -2400 3746 3177 35 0 0 0 chr9 6317404 6317439 -111545188 + AT_rich Low_complexity Low_complexity 1 35 0 1742 187 52 3 chr9 6317547 6317895 -111544732 + MLT1A1 LTR MaLR 1 365 0 230 121 0 0 chr9 6318136 6318169 -111544458 - L2 LINE L2 -16 3256 3224 309 214 87 19 chr9 6318245 6318348 -111544279 - MLT1J LTR MaLR -33 478 369 334 265 120 56 chr9 6318361 6318459 -111544168 - LTR16A1 LTR ERVL 0 457 367 195 100 0 0 chr9 6318459 6318489 -111544138 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 334 265 120 56 chr9 6318489 6318624 -111544003 - LTR16A1 LTR ERVL -90 367 209 2105 123 3 7 chr9 6318899 6319192 -111543435 - AluSx SINE Alu -16 296 5 330 234 34 88 chr9 6319235 6319467 -111543160 - MLT1J LTR MaLR -200 311 54 247 275 87 81 chr9 6319562 6319711 -111542916 - MIR SINE MIR -58 150 1 364 99 0 0 chr9 6319746 6319808 -111542819 - MLT2B3 LTR ERVL 0 520 403 234 81 0 0 chr9 6319808 6319845 -111542782 + (TA)n Simple_repeat Simple_repeat 1 37 0 227 104 0 0 chr9 6319852 6319900 -111542727 - LTR66 LTR ERVL -169 441 394 2019 199 17 60 chr9 6319905 6319919 -111542708 - MLT2B3 LTR ERVL -44 500 487 459 0 0 0 chr9 6319919 6319970 -111542657 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2019 199 17 60 chr9 6319970 6320389 -111542238 - MLT2B3 LTR ERVL -57 487 115 1939 154 3 3 chr9 6320389 6320694 -111541933 + AluJb SINE Alu 1 305 -7 2019 199 17 60 chr9 6320694 6320805 -111541822 - MLT2B3 LTR ERVL -429 115 1 1983 138 0 7 chr9 6321160 6321449 -111541178 + AluSg SINE Alu 1 287 -23 1337 87 0 0 chr9 6321701 6321885 -111540742 - L1PA14 LINE L1 0 6161 5978 1725 84 0 24 chr9 6321905 6322156 -111540471 - L1PA14 LINE L1 -291 5870 5626 204 295 103 13 chr9 6322759 6322837 -111539790 - L2 LINE L2 -21 3251 3167 38914 69 4 3 chr9 6322960 6324794 -111537833 + L1PA5 LINE L1 11 1841 -4313 2285 52 41 3 chr9 6324794 6325084 -111537543 - AluY SINE Alu -10 301 1 38914 69 4 3 chr9 6325084 6329383 -111533244 + L1PA5 LINE L1 1841 6152 -2 234 304 29 10 chr9 6331687 6331789 -111530838 + MIR SINE MIR 28 131 -131 425 222 22 0 chr9 6331826 6331916 -111530711 + MLT1H LTR MaLR 458 549 0 322 289 10 10 chr9 6331920 6332024 -111530603 + MIR SINE MIR 159 262 0 533 177 218 7 chr9 6332505 6332652 -111529975 - MER5A DNA MER1_type 0 189 12 637 246 191 24 chr9 6333286 6333627 -111529000 + MLT1J LTR MaLR 107 504 -7 25 0 0 0 chr9 6334050 6334075 -111528552 + AT_rich Low_complexity Low_complexity 1 25 0 331 266 24 32 chr9 6334199 6334323 -111528304 - MER117 DNA MER1_type -69 128 6 1952 154 23 0 chr9 6335350 6335656 -111526971 - AluSq SINE Alu 0 313 1 22 0 0 0 chr9 6335779 6335801 -111526826 + AT_rich Low_complexity Low_complexity 1 22 0 233 237 21 10 chr9 6336558 6336655 -111525972 - L1ME LINE L1 -193 5928 5831 850 213 66 92 chr9 6337031 6337378 -111525249 - MER46C DNA MER2_type 0 338 1 646 258 30 39 chr9 6337516 6337726 -111524901 - MIR SINE MIR -3 259 52 1143 232 77 16 chr9 6338462 6338535 -111524092 - MSTD LTR MaLR 0 396 329 1930 158 6 19 chr9 6338535 6338846 -111523781 + AluJo SINE Alu 1 307 -5 1143 232 77 16 chr9 6338846 6339082 -111523545 - MSTD LTR MaLR -67 329 68 739 62 0 0 chr9 6339082 6339178 -111523449 + AluSc SINE Alu 212 307 -2 432 168 47 0 chr9 6339188 6339277 -111523350 - MSTD LTR MaLR -344 89 1 680 284 48 141 chr9 6340044 6340494 -111522133 + L2 LINE L2 1950 2440 -874 1756 196 17 63 chr9 6340494 6340830 -111521797 - MSTD LTR MaLR -1 395 80 2363 103 0 0 chr9 6340830 6341132 -111521495 - AluSc SINE Alu -7 302 1 1756 196 17 63 chr9 6341132 6341209 -111521418 - MSTD LTR MaLR -316 80 1 680 284 48 141 chr9 6341209 6341321 -111521306 + L2 LINE L2 2440 2561 -753 2473 84 0 3 chr9 6341321 6341632 -111520995 - AluY SINE Alu 0 311 2 680 284 48 141 chr9 6341632 6341991 -111520636 + L2 LINE L2 2561 2786 -528 653 302 21 8 chr9 6342024 6342259 -111520368 - Charlie8 DNA MER1_type -2179 238 1 1452 167 105 0 chr9 6342780 6343074 -111519553 + MER44D DNA MER2_type 9 603 -6 2024 121 11 3 chr9 6343759 6344041 -111518586 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr9 6344045 6344065 -111518562 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1982 155 39 62 chr9 6344234 6344619 -111518008 + MSTB1 LTR MaLR 3 378 -54 2813 95 87 27 chr9 6344619 6345103 -111517524 + MER75 DNA T2_type 2 514 0 1982 155 39 62 chr9 6345103 6345155 -111517472 + MSTB1 LTR MaLR 378 430 -2 184 287 58 35 chr9 6345176 6345263 -111517364 + L2 LINE L2 3179 3267 -5 5703 124 32 13 chr9 6345903 6346911 -111515716 + Tigger3b DNA MER2_type 7 1033 -198 1912 149 56 20 chr9 6346915 6347305 -111515322 + MER4E LTR ERV1 371 774 -5 268 288 105 13 chr9 6347331 6347484 -111515143 + L1MC4a LINE L1 6415 6581 -1227 * 402 230 178 0 chr9 6347481 6347616 -111515011 + L1MC4 LINE L1 6769 6927 -1115 1239 262 67 80 chr9 6347664 6348317 -111514310 - LTR19C LTR ERV1 0 779 135 279 214 0 0 chr9 6348373 6348443 -111514184 + L1MC4 LINE L1 7154 7223 -819 418 297 110 7 chr9 6349104 6349249 -111513378 - MIR3 SINE MIR -15 193 34 285 303 19 0 chr9 6349678 6349833 -111512794 - MER103 DNA DNA 0 166 9 2130 120 3 13 chr9 6350520 6350828 -111511799 - AluSx SINE Alu -7 305 1 233 167 17 0 chr9 6350996 6351056 -111511571 - L1ME4a LINE L1 -1 6120 6060 532 290 80 35 chr9 6351072 6351354 -111511273 - L1ME4a LINE L1 -139 5982 5714 447 87 0 0 chr9 6351354 6351423 -111511204 + (TG)n Simple_repeat Simple_repeat 2 70 0 532 290 80 35 chr9 6351423 6351715 -111510912 - L1ME4a LINE L1 -407 5714 5382 1547 198 13 31 chr9 6352070 6352388 -111510239 + AluJo SINE Alu 1 312 0 417 364 18 49 chr9 6352478 6352764 -111509863 - L2 LINE L2 -493 2821 2545 266 259 52 0 chr9 6352846 6352904 -111509723 - MIR SINE MIR -116 92 32 274 354 137 13 chr9 6353033 6353412 -111509215 - L2 LINE L2 -903 2411 1986 666 176 14 131 chr9 6353625 6353846 -111508781 + MIR SINE MIR 68 262 0 1059 94 50 28 chr9 6354249 6354429 -111508198 + L1MB3 LINE L1 5999 6182 -1 612 242 80 58 chr9 6356215 6356553 -111506074 - L1MEc LINE L1 -3723 2423 2110 235 0 0 0 chr9 6356584 6356610 -111506017 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2405 50 0 0 chr9 6356610 6356892 -111505735 - AluY SINE Alu -29 282 1 679 198 93 0 chr9 6356895 6357057 -111505570 - L1 LINE L1 -1800 4346 4170 389 301 46 53 chr9 6358965 6359208 -111503419 - L1 LINE L1 -2791 3355 3112 2176 127 7 0 chr9 6359208 6359515 -111503112 - AluSx SINE Alu -3 309 1 389 301 46 53 chr9 6359515 6359636 -111502991 - L1 LINE L1 -3034 3112 2992 1715 209 64 43 chr9 6359636 6360104 -111502523 + MER31A LTR ERV1 4 481 -4 389 301 46 53 chr9 6360104 6360699 -111501928 - L1 LINE L1 -3154 2992 2402 297 73 0 0 chr9 6360774 6360815 -111501812 - HERVL LTR ERVL -4275 1379 1339 6038 138 16 16 chr9 6360816 6362853 -111499774 + L1MA3 LINE L1 4266 6304 -1 2193 96 0 51 chr9 6363173 6363487 -111499140 - AluSc SINE Alu -11 298 1 2051 118 0 0 chr9 6363693 6363964 -111498663 - AluSx SINE Alu -18 294 24 29 60 0 0 chr9 6364104 6364154 -111498473 + AT_rich Low_complexity Low_complexity 1 50 0 3201 88 0 0 chr9 6364169 6364610 -111498017 + L1P LINE L1 1 441 -5705 2132 85 4 4 chr9 6366072 6366343 -111496284 - AluY SINE Alu -40 271 1 1306 166 45 15 chr9 6367267 6367616 -111495011 - L1MC/D LINE L1 -567 5675 5290 368 272 158 16 chr9 6368010 6368194 -111494433 + MIR SINE MIR 49 258 -4 2149 144 0 0 chr9 6368220 6368519 -111494108 + AluSx SINE Alu 1 299 -13 538 191 122 63 chr9 6369069 6369258 -111493369 + MIR SINE MIR 13 212 -50 841 161 0 15 chr9 6369771 6369908 -111492719 - FLAM_C SINE Alu -8 135 1 558 280 58 13 chr9 6370394 6370619 -111492008 + AluSg/x SINE Alu 66 300 -12 2315 96 7 0 chr9 6370779 6371080 -111491547 + AluSp SINE Alu 2 304 -9 5456 117 56 32 chr9 6371130 6371605 -111491022 - Tigger3b DNA MER2_type -1797 1231 769 2249 109 0 0 chr9 6371605 6371899 -111490728 - AluSx SINE Alu -17 295 2 5456 117 56 32 chr9 6371899 6372160 -111490467 - Tigger3b DNA MER2_type -2259 769 516 1788 154 7 30 chr9 6372160 6372459 -111490168 - AluJb SINE Alu -20 292 1 5456 117 56 32 chr9 6372459 6372639 -111489988 - Tigger3b DNA MER2_type -2512 516 284 2045 126 0 0 chr9 6372639 6372953 -111489674 + AluSx SINE Alu 1 314 0 5456 117 56 32 chr9 6372953 6373050 -111489577 - Tigger3b DNA MER2_type -2744 284 191 358 143 0 0 chr9 6373048 6373104 -111489523 - AluS SINE Alu -246 57 2 * 684 259 153 35 chr9 6373452 6373807 -111488820 + L1ME4a LINE L1 5515 5956 -165 1528 174 0 33 chr9 6373807 6374083 -111488544 + AluJo SINE Alu 1 267 -45 684 259 153 35 chr9 6374083 6374264 -111488363 + L1ME4a LINE L1 5956 6114 -7 2744 149 30 20 chr9 6375300 6375838 -111486789 + L1MA4 LINE L1 5750 6292 -8 21 0 0 0 chr9 6375838 6375859 -111486768 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 6376664 6376713 -111485914 + AT_rich Low_complexity Low_complexity 1 49 0 2177 130 3 0 chr9 6376851 6377159 -111485468 - AluSx SINE Alu -3 309 1 410 247 55 22 chr9 6377568 6377750 -111484877 - L1MC5 LINE L1 -444 7517 7330 649 208 29 29 chr9 6377765 6377938 -111484689 + MER58B DNA MER1_type 169 341 0 1223 225 143 54 chr9 6377950 6378678 -111483949 - L1MC5 LINE L1 -630 7331 6543 502 221 52 100 chr9 6379384 6379615 -111483012 + L1ME1 LINE L1 5944 6163 -1 594 200 0 17 chr9 6379864 6379979 -111482648 - MLT1F LTR MaLR -85 482 370 763 256 29 33 chr9 6379991 6380233 -111482394 - MLT1F LTR MaLR -301 241 1 1916 114 0 11 chr9 6380604 6380867 -111481760 + AluSx SINE Alu 32 291 -21 2301 103 0 3 chr9 6380867 6381159 -111481468 + AluSp SINE Alu 1 291 -22 255 343 113 64 chr9 6381570 6381979 -111480648 + L2 LINE L2 2596 3047 -225 181 311 16 0 chr9 6382034 6382095 -111480532 - MIR SINE MIR -21 241 180 1454 295 185 35 chr9 6382541 6383677 -111478950 + L2 LINE L2 1483 2788 -526 2195 84 38 3 chr9 6385416 6385703 -111476924 - AluY SINE Alu -14 297 1 1424 181 55 66 chr9 6385774 6385867 -111476760 + MER2 DNA MER2_type 1 94 -250 2194 120 3 0 chr9 6385867 6386166 -111476461 + AluSx SINE Alu 6 305 -7 1424 181 55 66 chr9 6386166 6386420 -111476207 + MER2 DNA MER2_type 94 344 0 25 51 0 0 chr9 6386450 6386489 -111476138 + AT_rich Low_complexity Low_complexity 1 39 0 2414 94 3 0 chr9 6386499 6386807 -111475820 - AluSp SINE Alu -4 309 1 1334 174 51 68 chr9 6386880 6387174 -111475453 - AluJo SINE Alu -3 309 21 228 321 0 0 chr9 6387305 6387358 -111475269 + C-rich Low_complexity Low_complexity 1 53 0 1104 195 73 41 chr9 6387358 6387604 -111475023 - AluJb SINE Alu -58 254 1 282 240 145 45 chr9 6387605 6387677 -111474950 - HAL1 LINE L1 -159 2348 2285 2511 80 3 0 chr9 6387677 6387988 -111474639 - AluSp SINE Alu -1 312 1 282 240 145 45 chr9 6387988 6388115 -111474512 - HAL1 LINE L1 -222 2285 2129 315 253 33 11 chr9 6388278 6388369 -111474258 - L2 LINE L2 -845 2469 2377 873 81 15 37 chr9 6388578 6388714 -111473913 + FLAM_C SINE Alu 1 133 0 188 377 124 22 chr9 6388858 6389359 -111473268 - L2 LINE L2 -383 2931 2380 2054 136 3 10 chr9 6390073 6390251 -111472376 - AluSx SINE Alu 0 312 135 2086 151 0 0 chr9 6390251 6390562 -111472065 - AluSq SINE Alu -2 311 1 2054 136 3 10 chr9 6390562 6390693 -111471934 - AluSx SINE Alu -177 135 5 356 143 14 0 chr9 6390784 6390854 -111471773 - L1MD2 LINE L1 0 6359 6289 1921 141 0 35 chr9 6390854 6391167 -111471460 + AluJb SINE Alu 1 302 -10 198 0 0 0 chr9 6391609 6391631 -111470996 + (T)n Simple_repeat Simple_repeat 1 22 0 2015 137 0 3 chr9 6391791 6392084 -111470543 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr9 6392279 6392300 -111470327 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr9 6393331 6393368 -111469259 + AT_rich Low_complexity Low_complexity 1 37 0 6861 112 12 9 chr9 6395313 6396745 -111465882 + L1MA1 LINE L1 4869 6302 0 1879 218 95 57 chr9 6396762 6397809 -111464818 + L1MD2 LINE L1 5241 6344 -15 2378 95 0 3 chr9 6397812 6398116 -111464511 + AluSx SINE Alu 1 303 -9 1566 207 111 53 chr9 6398838 6399350 -111463277 - MLT1F LTR MaLR 0 542 1 1568 161 4 12 chr9 6399464 6399712 -111462915 + AluJb SINE Alu 1 246 -66 941 285 108 5 chr9 6399794 6400163 -111462464 - MLT1I LTR MaLR -2 407 1 575 225 202 19 chr9 6400218 6400525 -111462102 + L1ME LINE L1 5452 5814 -350 317 180 100 80 chr9 6401385 6401535 -111461092 + L1MC5 LINE L1 7246 7398 -563 2609 23 0 0 chr9 6401662 6401962 -111460665 - AluYa5 SINE Alu -11 300 1 304 218 149 0 chr9 6402147 6402234 -111460393 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6402275 6402304 -111460323 + AT_rich Low_complexity Low_complexity 1 29 0 850 236 6 0 chr9 6402427 6402609 -111460018 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6402611 6402632 -111459995 + AT_rich Low_complexity Low_complexity 1 21 0 2213 115 0 0 chr9 6402927 6403215 -111459412 + AluSg SINE Alu 1 288 -22 2097 119 7 3 chr9 6403290 6403585 -111459042 + AluSp SINE Alu 1 296 -17 1841 158 3 3 chr9 6403761 6404058 -111458569 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6404060 6404082 -111458545 + AT_rich Low_complexity Low_complexity 1 22 0 732 256 105 49 chr9 6404142 6405094 -111457533 - L1ME LINE L1 -402 5751 4742 301 327 99 6 chr9 6405190 6405502 -111457125 - L1ME LINE L1 -1800 4329 3989 746 263 161 12 chr9 6405510 6406027 -111456600 - L1ME LINE L1 -2381 3748 3155 1040 118 0 0 chr9 6406409 6406545 -111456082 + AluSq/x SINE Alu 1 136 -176 2222 127 0 6 chr9 6406546 6406860 -111455767 + AluSx SINE Alu 1 312 0 673 259 73 54 chr9 6407022 6407295 -111455332 + L2 LINE L2 2864 3145 -168 1719 203 97 32 chr9 6407295 6407769 -111454858 - MLT1D LTR MaLR 0 505 1 673 259 73 54 chr9 6407769 6407808 -111454819 + L2 LINE L2 3145 3182 -131 198 0 0 0 chr9 6407884 6407906 -111454721 + (T)n Simple_repeat Simple_repeat 1 22 0 252 339 15 31 chr9 6408025 6408155 -111454472 - L1ME LINE L1 -5553 566 439 562 248 29 79 chr9 6409592 6409839 -111452788 - L1MC5 LINE L1 -37 7924 7691 1613 205 0 3 chr9 6409839 6410136 -111452491 + AluJb SINE Alu 1 296 -16 562 248 29 79 chr9 6410136 6410166 -111452461 - L1MC5 LINE L1 -270 7691 7661 255 221 91 0 chr9 6410213 6410290 -111452337 - U13 snRNA snRNA -2 102 19 32 86 0 0 chr9 6410625 6410706 -111451921 + AT_rich Low_complexity Low_complexity 1 81 0 180 262 119 32 chr9 6410758 6410884 -111451743 - MIR SINE MIR -55 153 17 216 163 0 0 chr9 6411003 6411046 -111451581 + A-rich Low_complexity Low_complexity 1 43 0 304 204 11 45 chr9 6411253 6411341 -111451286 + MIR SINE MIR 96 180 -82 223 57 86 0 chr9 6411442 6411477 -111451150 + L2 LINE L2 3017 3054 -259 189 0 0 0 chr9 6412070 6412091 -111450536 + (TC)n Simple_repeat Simple_repeat 2 22 0 2293 114 0 3 chr9 6412446 6412753 -111449874 + AluSx SINE Alu 2 307 -5 23 33 0 0 chr9 6413165 6413195 -111449432 + AT_rich Low_complexity Low_complexity 1 30 0 2243 116 0 0 chr9 6413252 6413554 -111449073 + AluSg SINE Alu 2 303 -7 1881 138 0 28 chr9 6413565 6413856 -111448771 + AluSx SINE Alu 1 283 -29 2387 103 0 0 chr9 6414451 6414753 -111447874 + AluSq SINE Alu 1 302 -11 26 30 0 0 chr9 6414768 6414801 -111447826 + AT_rich Low_complexity Low_complexity 1 33 0 258 280 49 21 chr9 6414965 6415108 -111447519 + L1M4 LINE L1 4599 4745 -1401 2733 167 5 92 chr9 6415109 6415683 -111446944 - MER44D DNA MER2_type 0 605 27 1468 213 119 20 chr9 6415693 6416140 -111446487 + L1M4 LINE L1 4744 5234 -912 387 291 17 26 chr9 6416623 6416740 -111445887 + LTR67 LTR ERVL 432 547 -10 420 129 0 0 chr9 6417008 6417070 -111445557 + AluSg/x SINE Alu 135 196 -114 2010 116 0 34 chr9 6417070 6417362 -111445265 + AluSx SINE Alu 23 304 -8 450 131 7 189 chr9 6418021 6418105 -111444522 + MER5A DNA MER1_type 1 46 -143 1965 103 41 0 chr9 6418105 6418376 -111444251 + AluSx SINE Alu 31 312 0 450 131 7 189 chr9 6418376 6418444 -111444183 + MER5A DNA MER1_type 46 125 -64 302 233 103 43 chr9 6418649 6418765 -111443862 + MER117 DNA MER1_type 53 175 -22 1199 128 0 22 chr9 6418932 6419112 -111443515 + AluSg/x SINE Alu 132 307 -3 440 227 0 42 chr9 6419130 6419249 -111443378 - MER5B DNA MER1_type -64 114 1 968 181 39 6 chr9 6419257 6419439 -111443188 + MER5A DNA MER1_type 2 189 0 1779 171 6 16 chr9 6420013 6420328 -111442299 - MLT1A1 LTR MaLR 0 365 54 1363 106 5 0 chr9 6420334 6420523 -111442104 - AluSq SINE Alu -1 312 123 253 278 195 73 chr9 6421210 6421366 -111441261 + MIR SINE MIR 33 221 -41 2197 115 3 13 chr9 6421366 6421678 -111440949 + AluSq SINE Alu 1 309 -4 253 278 195 73 chr9 6421678 6421726 -111440901 + MIR SINE MIR 221 262 0 495 273 67 70 chr9 6421963 6422191 -111440436 + MLT1J LTR MaLR 1 229 -282 2426 97 0 3 chr9 6422191 6422501 -111440126 - AluSx SINE Alu -3 309 1 495 273 67 70 chr9 6422501 6422628 -111439999 + MLT1J LTR MaLR 229 355 -156 2193 125 3 0 chr9 6424028 6424324 -111438303 + AluSp SINE Alu 1 297 -16 2156 67 103 0 chr9 6424382 6424664 -111437963 + AluY SINE Alu 1 311 0 418 298 123 21 chr9 6426763 6427186 -111435441 + L1ME4a LINE L1 5635 6100 -21 200 139 0 28 chr9 6427271 6427307 -111435320 - MIR SINE MIR -110 152 118 1679 177 42 0 chr9 6427482 6427770 -111434857 - AluJb SINE Alu -12 300 1 201 255 0 0 chr9 6427841 6427888 -111434739 - MER5A DNA MER1_type 0 189 143 253 317 67 29 chr9 6427929 6427948 -111434679 - L1MC4 LINE L1 -1 8041 8024 1894 155 3 20 chr9 6427948 6428245 -111434382 + AluJb SINE Alu 1 292 -20 253 317 67 29 chr9 6428245 6428433 -111434194 - L1MC4 LINE L1 -18 8024 7826 404 202 1 0 chr9 6428475 6428557 -111434070 - L1ME2 LINE L1 -22 6140 6058 243 304 89 0 chr9 6428674 6428786 -111433841 + MER5A DNA MER1_type 43 164 -25 243 282 39 13 chr9 6428718 6428796 -111433831 - MER5A DNA MER1_type -85 104 25 251 109 43 0 chr9 6428991 6429037 -111433590 - L2 LINE L2 -2 3311 3264 2053 127 0 3 chr9 6429647 6429930 -111432697 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr9 6429957 6429978 -111432649 + AT_rich Low_complexity Low_complexity 1 21 0 227 132 26 0 chr9 6431286 6431324 -111431303 - Tigger4(Zombi) DNA MER2_type -2646 85 47 743 210 21 0 chr9 6431327 6431470 -111431157 + AluSq/x SINE Alu 2 147 -166 565 143 0 11 chr9 6431470 6431561 -111431066 + AluJb SINE Alu 210 299 -3 1991 136 3 17 chr9 6431992 6432293 -111430334 + AluSx SINE Alu 1 297 -15 2367 85 0 0 chr9 6432411 6432704 -111429923 + AluSc SINE Alu 1 293 -16 1800 138 14 18 chr9 6432704 6432987 -111429640 - AluJb SINE Alu -28 284 3 1954 167 3 3 chr9 6433055 6433361 -111429266 + AluJb SINE Alu 1 306 -6 1381 185 8 0 chr9 6433501 6433739 -111428888 + AluJo SINE Alu 56 295 -17 210 239 120 35 chr9 6435373 6435515 -111427112 + L2 LINE L2 2725 2878 -436 2321 117 0 0 chr9 6435837 6436146 -111426481 + AluSx SINE Alu 1 309 -3 255 273 112 25 chr9 6437379 6437540 -111425087 - MER5B DNA MER1_type 0 178 4 1973 128 3 72 chr9 6440979 6441314 -111421313 + AluSx SINE Alu 1 312 0 183 218 109 0 chr9 6441447 6441502 -111421125 - MIR SINE MIR -61 147 87 2264 121 0 3 chr9 6442003 6442316 -111420311 + AluSx SINE Alu 1 312 0 1584 94 49 8 chr9 6442550 6442795 -111419832 + L1MA5A LINE L1 6040 6294 -3 2359 94 0 3 chr9 6442806 6443113 -111419514 + AluSc SINE Alu 1 306 -3 2378 100 0 0 chr9 6444725 6445034 -111417593 + AluSq SINE Alu 1 309 -4 2107 96 55 17 chr9 6445043 6445335 -111417292 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr9 6446129 6446151 -111416476 + AT_rich Low_complexity Low_complexity 1 22 0 2064 187 85 13 chr9 6446228 6446699 -111415928 + MLT1D LTR MaLR 1 505 0 2071 139 0 0 chr9 6446860 6447154 -111415473 + AluSx SINE Alu 1 294 -18 184 290 48 0 chr9 6447640 6447702 -111414925 + MIR SINE MIR 193 257 -5 2236 104 0 3 chr9 6448062 6448351 -111414276 - AluSx SINE Alu -21 291 4 368 242 53 11 chr9 6449347 6449442 -111413185 + FRAM SINE Alu 1 99 -67 2359 97 0 7 chr9 6449457 6449757 -111412870 + AluSx SINE Alu 1 298 -14 201 263 91 40 chr9 6450395 6450494 -111412133 - L2 LINE L2 0 3272 3169 22 35 0 0 chr9 6454035 6454064 -111408563 + AT_rich Low_complexity Low_complexity 1 29 0 1823 165 17 3 chr9 6454975 6455272 -111407355 - AluJb SINE Alu -11 301 1 415 290 91 23 chr9 6457240 6457416 -111405211 + L2 LINE L2 2895 3082 -231 607 188 20 0 chr9 6457441 6457542 -111405085 - FLAM_A SINE Alu -28 114 12 274 265 125 0 chr9 6457543 6457673 -111404954 + L2 LINE L2 3113 3266 -47 184 42 0 0 chr9 6457953 6457977 -111404650 + (TTTG)n Simple_repeat Simple_repeat 2 144 0 1881 140 3 7 chr9 6457977 6458262 -111404365 - AluSx SINE Alu -28 284 1 23 33 0 0 chr9 6458273 6458303 -111404324 + AT_rich Low_complexity Low_complexity 1 30 0 2485 71 0 0 chr9 6458982 6459291 -111403336 - AluY SINE Alu -2 309 1 696 186 76 0 chr9 6459324 6459496 -111403131 - L1MA4 LINE L1 -6 6294 6110 180 219 0 0 chr9 6460235 6460276 -111402351 + (TA)n Simple_repeat Simple_repeat 2 42 0 1850 160 7 3 chr9 6460276 6460563 -111402064 - AluSx SINE Alu -24 288 1 252 299 43 43 chr9 6460742 6460859 -111401768 - MIR SINE MIR -116 146 30 281 109 43 0 chr9 6462160 6462206 -111400421 + Alu SINE Alu 245 292 -10 1169 180 48 0 chr9 6462208 6462414 -111400213 + AluJo SINE Alu 87 302 -10 360 288 45 0 chr9 6462414 6462525 -111400102 + L1 LINE L1 3041 3156 -2990 326 254 100 39 chr9 6462651 6462781 -111399846 + HAL1b LINE L1 1203 1340 -8 299 228 0 0 chr9 6463513 6463570 -111399057 + MLT1A2 LTR MaLR 1 57 -317 2365 106 0 3 chr9 6463571 6463883 -111398744 + AluSx SINE Alu 1 311 -1 2166 122 7 0 chr9 6463894 6464197 -111398430 + AluSx SINE Alu 1 305 -7 429 100 50 10 chr9 6464365 6464465 -111398162 + (TA)n Simple_repeat Simple_repeat 2 105 0 352 187 44 0 chr9 6464532 6464623 -111398004 - L1MB4 LINE L1 -5 6175 6081 2241 123 0 0 chr9 6465486 6465787 -111396840 + AluSx SINE Alu 1 301 -11 1354 93 67 44 chr9 6466414 6466516 -111396111 - MER30 DNA MER1_type 0 230 132 2138 127 0 3 chr9 6466516 6466816 -111395811 + AluSx SINE Alu 1 299 -13 1354 93 67 44 chr9 6466816 6466938 -111395689 - MER30 DNA MER1_type -98 132 1 1648 197 14 0 chr9 6467879 6468163 -111394464 - AluJb SINE Alu -16 296 9 2154 79 3 60 chr9 6468388 6468705 -111393922 + AluY SINE Alu 1 299 -12 1974 110 0 55 chr9 6468716 6469070 -111393557 + AluSx SINE Alu 1 312 0 800 137 8 8 chr9 6469184 6469315 -111393312 - FLAM_C SINE Alu -12 131 1 339 280 60 0 chr9 6469447 6469547 -111393080 + MIR SINE MIR 49 154 -108 2060 112 4 0 chr9 6469913 6470209 -111392418 + AluSg SINE Alu 3 299 0 397 258 139 46 chr9 6470855 6471399 -111391228 + L1MEd LINE L1 957 1651 -839 2068 103 0 82 chr9 6471421 6471557 -111391070 + AluSx SINE Alu 1 147 -165 2321 58 10 7 chr9 6471557 6471879 -111390748 + AluY SINE Alu 1 311 0 2068 103 0 82 chr9 6471879 6472073 -111390554 + AluSx SINE Alu 147 304 -8 9415 46 0 1 chr9 6472297 6474265 -111388362 + L1PA5 LINE L1 4197 6153 -1 2041 118 54 0 chr9 6474600 6474896 -111387731 - AluSq SINE Alu -1 312 1 1992 120 0 11 chr9 6475147 6475458 -111387169 + AluSc SINE Alu 1 308 0 2482 224 79 22 chr9 6476151 6477183 -111385444 + L1MDb LINE L1 767 2007 -4399 1898 122 3 24 chr9 6477183 6477479 -111385148 + AluSq SINE Alu 1 290 -23 728 247 103 0 chr9 6477657 6477851 -111384776 - L2 LINE L2 -236 3077 2864 2277 121 0 6 chr9 6478015 6478329 -111384298 - AluSx SINE Alu 0 312 1 1040 118 0 0 chr9 6478330 6478466 -111384161 - AluSq/x SINE Alu -176 136 1 729 265 161 12 chr9 6478848 6479365 -111383262 + L1MDb LINE L1 3432 4025 -2381 301 327 99 6 chr9 6479373 6479685 -111382942 + L1MDb LINE L1 4266 4606 -1800 732 256 105 49 chr9 6479781 6480733 -111381894 + L1MDb LINE L1 5019 6028 -402 22 0 0 0 chr9 6480792 6480814 -111381813 + AT_rich Low_complexity Low_complexity 1 22 0 1854 155 3 3 chr9 6480816 6481113 -111381514 + AluSx SINE Alu 3 299 -13 2107 118 7 3 chr9 6481289 6481585 -111381042 - AluSp SINE Alu -16 297 1 2215 115 0 0 chr9 6481660 6481948 -111380679 - AluSg SINE Alu -22 288 1 21 0 0 0 chr9 6482243 6482264 -111380363 + AT_rich Low_complexity Low_complexity 1 21 0 850 236 6 0 chr9 6482266 6482448 -111380179 - MER58A DNA MER1_type 0 224 42 22 35 0 0 chr9 6482571 6482600 -111380027 + AT_rich Low_complexity Low_complexity 1 29 0 304 218 149 0 chr9 6482641 6482728 -111379899 + L1ME LINE L1 5637 5736 -385 1916 133 4 0 chr9 6482913 6483184 -111379443 + AluSx SINE Alu 1 272 -40 285 149 14 27 chr9 6483184 6483258 -111379369 + GA-rich Low_complexity Low_complexity 1 73 0 1577 209 3 0 chr9 6484596 6484893 -111377734 - AluJo SINE Alu -14 298 1 2283 110 0 0 chr9 6484898 6485198 -111377429 - AluSx SINE Alu -12 300 1 5076 55 12 5 chr9 6485356 6486009 -111376618 - L1PA7 LINE L1 -1 6153 5496 15241 98 23 32 chr9 6486009 6488583 -111374044 + L1MA4A LINE L1 3071 5588 -715 1756 187 7 0 chr9 6488583 6488882 -111373745 - AluJb SINE Alu -11 301 1 15241 98 23 32 chr9 6488882 6489233 -111373394 + L1MA4A LINE L1 5588 5941 -362 3433 53 0 2 chr9 6488981 6489454 -111373173 + L1PA5 LINE L1 5690 6161 0 * 914 189 86 6 chr9 6489566 6489741 -111372886 + MER5A DNA MER1_type 1 189 0 425 300 79 11 chr9 6490385 6490575 -111372052 + MIR SINE MIR 60 262 0 1812 123 0 11 chr9 6490665 6490925 -111371702 - AluY SINE Alu -15 296 40 212 298 114 23 chr9 6491731 6491862 -111370765 + L2 LINE L2 2259 2401 -913 890 281 91 12 chr9 6492122 6492539 -111370088 + L1MC5 LINE L1 5476 5925 -1883 254 243 0 27 chr9 6492540 6492614 -111370013 + (TA)n Simple_repeat Simple_repeat 1 72 0 822 74 0 50 chr9 6492675 6492781 -111369846 + AluSc SINE Alu 174 284 -25 237 33 0 0 chr9 6492781 6492811 -111369816 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2227 53 36 13 chr9 6492814 6493118 -111369509 + AluY SINE Alu 1 311 0 416 201 179 80 chr9 6493579 6493974 -111368653 + L1MC5 LINE L1 6563 6920 -888 478 253 113 27 chr9 6494154 6494446 -111368181 + L1MC5 LINE L1 7353 7669 -292 2206 175 68 68 chr9 6494466 6495026 -111367601 - MER68 LTR ERV1 0 562 3 234 321 28 9 chr9 6495091 6495200 -111367427 - LTR16B LTR ERVL -62 402 292 273 323 8 24 chr9 6495298 6495422 -111367205 - LTR16B LTR ERVL -309 155 34 371 235 17 9 chr9 6495499 6495614 -111367013 + L1MC5 LINE L1 7744 7859 -102 349 229 141 65 chr9 6495737 6495907 -111366720 - HAL1 LINE L1 -20 2487 2305 325 259 265 24 chr9 6495985 6496151 -111366476 - MIR SINE MIR -40 222 17 531 228 159 38 chr9 6496199 6496594 -111366033 - HAL1 LINE L1 -337 2170 1728 485 289 73 50 chr9 6496636 6496979 -111365648 - HAL1 LINE L1 -2156 351 1 2376 79 0 3 chr9 6497396 6497688 -111364939 + AluY SINE Alu 1 291 -20 1879 151 24 10 chr9 6497718 6498016 -111364611 - AluSx SINE Alu -8 304 3 1561 167 0 25 chr9 6498046 6498142 -111364485 + AluJb SINE Alu 43 140 -172 1942 124 39 0 chr9 6498142 6498425 -111364202 + AluSx SINE Alu 1 294 -18 1561 167 0 25 chr9 6498425 6498603 -111364024 + AluJb SINE Alu 140 310 -2 1817 169 0 20 chr9 6498721 6499022 -111363605 + AluJo SINE Alu 1 295 -17 1921 137 11 0 chr9 6499024 6499301 -111363326 + AluSx SINE Alu 1 280 -32 878 145 0 36 chr9 6499438 6499576 -111363051 - FLAM_C SINE Alu 0 133 1 2092 125 3 3 chr9 6499683 6499979 -111362648 + AluSq SINE Alu 1 296 -17 210 235 20 92 chr9 6499979 6500077 -111362550 + MER5A DNA MER1_type 67 157 -32 460 269 173 15 chr9 6501112 6501309 -111361318 + MIR SINE MIR 3 230 -32 1616 167 7 48 chr9 6501795 6502133 -111360494 + AluJo SINE Alu 2 327 0 1869 137 7 0 chr9 6502321 6502592 -111360035 + AluSx SINE Alu 1 273 -39 599 180 33 161 chr9 6503046 6503183 -111359444 - MER5A DNA MER1_type -5 184 82 1767 154 17 33 chr9 6503183 6503482 -111359145 - AluJb SINE Alu -12 300 7 599 180 33 161 chr9 6503482 6503555 -111359072 - MER5A DNA MER1_type -107 82 1 279 146 42 0 chr9 6503563 6503611 -111359016 + MER5B DNA MER1_type 1 50 -128 321 282 58 83 chr9 6503653 6503809 -111358818 + MER5B DNA MER1_type 26 177 -1 21 0 0 0 chr9 6504037 6504058 -111358569 + AT_rich Low_complexity Low_complexity 1 21 0 1430 142 134 0 chr9 6505145 6505398 -111357229 + AluSx SINE Alu 14 300 -12 492 328 218 29 chr9 6506217 6506673 -111355954 - L3 LINE CR1 -35 1542 971 1921 158 20 0 chr9 6506673 6506977 -111355650 + AluSx SINE Alu 1 310 -2 492 328 218 29 chr9 6506977 6507047 -111355580 - L3 LINE CR1 -606 971 916 2104 143 0 0 chr9 6507052 6507360 -111355267 + AluSx SINE Alu 1 308 -4 1944 130 0 7 chr9 6508676 6508960 -111353667 + AluSx SINE Alu 1 303 0 190 0 0 0 chr9 6508960 6508981 -111353646 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 544 164 239 13 chr9 6508992 6509151 -111353476 + L1MB7 LINE L1 5990 6184 0 1402 204 25 32 chr9 6509161 6509291 -111353336 + AluJb SINE Alu 3 132 -180 1986 105 54 14 chr9 6509291 6509585 -111353042 + AluSx SINE Alu 1 306 -6 1402 204 25 32 chr9 6509585 6509734 -111352893 + AluJb SINE Alu 132 280 -32 2099 118 7 7 chr9 6509846 6510135 -111352492 + AluSx SINE Alu 1 289 -23 2113 109 31 7 chr9 6511451 6511745 -111350882 + AluSx SINE Alu 1 301 -11 320 331 142 7 chr9 6511980 6512128 -111350499 - MIR SINE MIR -89 173 6 1281 199 102 0 chr9 6512993 6513259 -111349368 - AluJo SINE Alu -19 293 1 1830 213 107 22 chr9 6513658 6514146 -111348481 - MER74B LTR ERVL -16 606 78 1941 145 17 0 chr9 6514275 6514565 -111348062 + AluSq SINE Alu 1 295 -18 261 308 64 0 chr9 6514729 6514807 -111347820 + MIR SINE MIR 31 113 -149 1043 95 0 20 chr9 6514956 6515104 -111347523 + AluSq/x SINE Alu 3 147 -165 360 191 0 0 chr9 6515104 6515172 -111347455 + Alu SINE Alu 234 301 0 182 369 98 16 chr9 6515268 6515390 -111347237 - MIR SINE MIR -112 150 19 2048 134 3 7 chr9 6515404 6515703 -111346924 - AluSx SINE Alu -14 298 1 1911 160 20 0 chr9 6515737 6516043 -111346584 + AluJo SINE Alu 1 312 0 249 278 35 43 chr9 6516198 6516313 -111346314 + L1ME3A LINE L1 5962 6075 -95 2022 134 7 0 chr9 6516888 6517180 -111345447 - AluSx SINE Alu -18 294 1 2176 118 10 0 chr9 6517537 6517842 -111344785 + AluSq SINE Alu 1 308 -5 209 370 69 40 chr9 6518132 6518305 -111344322 - MIR SINE MIR -84 178 1 2571 153 244 139 chr9 6518648 6518798 -111343829 + L1MC3 LINE L1 6565 6698 -1087 2009 115 13 35 chr9 6518798 6519112 -111343515 - AluSx SINE Alu -5 307 1 2571 153 244 139 chr9 6519112 6519395 -111343232 + L1MC3 LINE L1 6698 6950 -835 271 214 39 78 chr9 6519395 6519498 -111343129 + MLT1F1 LTR MaLR 27 125 -442 2571 153 244 139 chr9 6519498 6520065 -111342562 + L1MC3 LINE L1 6950 7783 -2 349 285 46 8 chr9 6520423 6520553 -111342074 - L1 LINE L1 -1952 4194 4060 2246 108 0 3 chr9 6520616 6520921 -111341706 - AluSg SINE Alu -6 304 1 987 148 12 0 chr9 6521807 6521969 -111340658 + AluJb SINE Alu 131 294 -18 474 271 86 24 chr9 6521969 6522224 -111340403 + L1ME3A LINE L1 4492 4762 -1384 1233 117 6 0 chr9 6522227 6522398 -111340229 + AluSg SINE Alu 23 194 -116 453 260 136 16 chr9 6522451 6522664 -111339963 + L1ME3A LINE L1 5612 5800 -321 2131 119 0 16 chr9 6522868 6523178 -111339449 + AluSx SINE Alu 1 305 -7 2300 63 7 17 chr9 6523863 6524162 -111338465 - AluY SINE Alu -15 296 1 2069 112 17 3 chr9 6524230 6524524 -111338103 + AluSg SINE Alu 1 298 -12 1489 161 38 65 chr9 6524536 6524851 -111337776 + AluJb SINE Alu 1 307 0 357 179 64 13 chr9 6525281 6525359 -111337268 + MLT1B LTR MaLR 38 119 -271 1690 168 144 47 chr9 6525386 6525808 -111336819 + MLT1C LTR MaLR 1 463 -4 23 0 0 0 chr9 6526302 6526325 -111336302 + AT_rich Low_complexity Low_complexity 1 23 0 185 123 53 18 chr9 6527510 6527567 -111335060 + (TA)n Simple_repeat Simple_repeat 1 59 0 2417 28 52 0 chr9 6527758 6528049 -111334578 + AluY SINE Alu 1 306 -5 1998 103 19 23 chr9 6528217 6528527 -111334100 + AluSc SINE Alu 1 309 0 460 149 243 68 chr9 6528548 6528696 -111333931 - MER5A DNA MER1_type -6 183 10 325 290 54 0 chr9 6528940 6529033 -111333594 + MER91B DNA MER1_type 92 189 -1 30 0 0 0 chr9 6531142 6531172 -111331455 + GC_rich Low_complexity Low_complexity 1 30 0 1326 47 0 10 chr9 6532378 6532397 -111330230 - AluY SINE Alu -7 304 286 279 0 0 0 chr9 6532397 6532428 -111330199 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1326 47 0 10 chr9 6532428 6532666 -111329961 - AluY SINE Alu -25 286 2 2336 92 0 7 chr9 6532905 6533209 -111329418 + AluSx SINE Alu 1 302 -10 545 105 13 0 chr9 6533381 6533457 -111329170 + MADE1 DNA Mariner 1 77 -3 253 275 174 9 chr9 6533816 6533925 -111328702 + MIR SINE MIR 17 143 -119 201 341 49 71 chr9 6534275 6534686 -111327941 - L2 LINE L2 -656 2658 2257 1871 175 3 0 chr9 6535172 6535480 -111327147 - AluSx SINE Alu -3 309 1 275 259 206 46 chr9 6536435 6536566 -111326061 - MIR3 SINE MIR -36 172 21 1363 175 163 44 chr9 6536858 6536878 -111325749 + LTR54B LTR ERV1 1 17 -481 2006 133 0 36 chr9 6536878 6537186 -111325441 + AluSx SINE Alu 1 297 -15 1363 175 163 44 chr9 6537186 6537396 -111325231 + LTR54B LTR ERV1 17 201 -297 2255 119 0 0 chr9 6537396 6537691 -111324936 + AluSx SINE Alu 1 295 -17 1363 175 163 44 chr9 6537691 6537894 -111324733 + LTR54B LTR ERV1 201 487 -11 420 221 11 72 chr9 6537988 6538129 -111324498 - MLT1G1 LTR MaLR -37 556 425 290 138 35 11 chr9 6538166 6538253 -111324374 + CT-rich Low_complexity Low_complexity 2 90 0 1133 226 8 77 chr9 6538280 6538459 -111324168 - MLT1G1 LTR MaLR -294 296 192 2355 75 9 40 chr9 6538459 6538781 -111323846 - AluSx SINE Alu 0 312 1 1133 226 8 77 chr9 6538781 6538961 -111323666 - MLT1G1 LTR MaLR -398 192 1 1709 197 0 7 chr9 6539029 6539323 -111323304 + AluJo SINE Alu 1 292 -20 793 273 24 14 chr9 6539669 6539878 -111322749 - MER58A DNA MER1_type -10 214 4 1578 158 18 32 chr9 6539982 6540260 -111322367 - AluJo SINE Alu -38 274 1 298 238 72 0 chr9 6540263 6540382 -111322245 - L1ME LINE L1 -397 5765 5631 574 248 46 100 chr9 6540501 6540634 -111321993 - Tigger8 DNA MER2_type -180 486 347 1718 183 3 3 chr9 6540634 6540924 -111321703 - AluJb SINE Alu -17 295 6 574 248 46 100 chr9 6540924 6541141 -111321486 - Tigger8 DNA MER2_type -319 347 155 2127 138 0 0 chr9 6541248 6541560 -111321067 - AluSx SINE Alu 0 312 1 1269 204 12 12 chr9 6541686 6541936 -111320691 - MLT1H LTR MaLR -278 271 22 1226 124 0 0 chr9 6541937 6542106 -111320521 - AluSg/x SINE Alu -14 298 130 2366 83 0 13 chr9 6542109 6542409 -111320218 - AluY SINE Alu -15 296 1 450 139 0 28 chr9 6542636 6542708 -111319919 - Tigger2 DNA MER2_type -2648 70 1 941 207 57 10 chr9 6542954 6543147 -111319480 - MER8 DNA MER2_type -37 202 1 2504 230 109 45 chr9 6543204 6543996 -111318631 + L1ME3 LINE L1 5305 6146 -16 1953 120 11 0 chr9 6544213 6544522 -111318105 + AluSx SINE Alu 1 312 0 206 163 41 0 chr9 6544639 6544688 -111317939 + (CATG)n Simple_repeat Simple_repeat 4 54 0 204 275 33 33 chr9 6544688 6544779 -111317848 + (TATG)n Simple_repeat Simple_repeat 4 94 0 746 196 15 23 chr9 6545236 6545369 -111317258 - FLAM_A SINE Alu 0 133 2 1855 149 7 13 chr9 6546289 6546590 -111316037 - AluJo SINE Alu -7 305 7 561 144 25 8 chr9 6546938 6547056 -111315571 + CT-rich Low_complexity Low_complexity 1 120 0 2134 135 0 0 chr9 6547070 6547366 -111315261 - AluSx SINE Alu -16 296 1 341 176 29 29 chr9 6547441 6547509 -111315118 - MLT1B LTR MaLR 0 390 323 1805 132 50 46 chr9 6547669 6548022 -111314605 - MLT1B LTR MaLR -36 392 3 1278 186 7 52 chr9 6548606 6548875 -111313752 + AluJb SINE Alu 38 294 -18 334 271 140 28 chr9 6549588 6549806 -111312821 - L1MC/D LINE L1 -301 5820 5631 2142 136 0 0 chr9 6549811 6550112 -111312515 - AluSx SINE Alu -11 301 1 189 0 0 0 chr9 6550239 6550260 -111312367 + (TATAA)n Simple_repeat Simple_repeat 4 24 0 31 76 0 0 chr9 6550260 6550326 -111312301 + AT_rich Low_complexity Low_complexity 1 66 0 1276 194 68 4 chr9 6550326 6550439 -111312188 + AluJb SINE Alu 10 114 -198 276 30 0 0 chr9 6550439 6550472 -111312155 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1276 194 68 4 chr9 6550472 6550610 -111312017 + AluJb SINE Alu 114 277 -35 306 73 0 0 chr9 6550638 6550679 -111311948 + (CA)n Simple_repeat Simple_repeat 2 42 0 15881 157 16 24 chr9 6550716 6550882 -111311745 - L1MA3 LINE L1 -2 7722 7556 1903 169 0 6 chr9 6550882 6551196 -111311431 - AluSx SINE Alu 0 312 1 15881 157 16 24 chr9 6551196 6553579 -111309048 - L1MA3 LINE L1 -168 7556 5154 1371 203 43 14 chr9 6553579 6553860 -111308767 - AluJo SINE Alu -23 289 1 15881 157 16 24 chr9 6553860 6553960 -111308667 - L1MA3 LINE L1 -2570 5154 5055 21572 30 3 2 chr9 6553960 6557171 -111305456 + L1PA3 LINE L1 2938 6155 0 15881 157 16 24 chr9 6557171 6558347 -111304280 - L1MA3 LINE L1 -2669 5055 3871 2305 85 3 3 chr9 6558347 6558640 -111303987 - AluSp SINE Alu -20 293 1 15881 157 16 24 chr9 6558640 6558986 -111303641 - L1MA3 LINE L1 -3853 3871 3524 1703 180 0 66 chr9 6558986 6559320 -111303307 - AluJb SINE Alu 0 312 1 263 274 27 0 chr9 6559268 6559341 -111303286 - AluSp SINE Alu -116 187 113 * 15881 157 16 24 chr9 6559320 6559562 -111303065 - L1MA3 LINE L1 -4200 3524 3353 1941 135 74 19 chr9 6559562 6559887 -111302740 + MER61A LTR ERV1 1 343 0 2712 176 35 20 chr9 6559888 6560427 -111302200 + MER61A-int LTR ERV1 3 549 -4668 337 134 45 15 chr9 6560489 6560556 -111302071 + MER61A-int LTR ERV1 731 799 -4418 * 8320 88 82 25 chr9 6560530 6560733 -111301894 + MER61A-int LTR ERV1 1320 1510 -3707 1892 117 60 0 chr9 6560733 6561014 -111301613 - AluY SINE Alu -1 310 13 8320 88 82 25 chr9 6561014 6562136 -111300491 + MER61A-int LTR ERV1 1510 2721 -2496 44061 50 1 4 chr9 6562154 6568320 -111294307 - L1PA5 LINE L1 -7 6147 2 15736 84 5 0 chr9 6568320 6570376 -111292251 - L1P LINE L1 -4069 2077 11 17498 79 49 22 chr9 6570385 6570586 -111292041 + MER61A-int LTR ERV1 2709 2903 -2314 1966 135 7 3 chr9 6570586 6570882 -111291745 - AluSx SINE Alu -15 297 1 17498 79 49 22 chr9 6570882 6573124 -111289503 + MER61A-int LTR ERV1 2903 5217 0 384 129 16 0 chr9 6573124 6573186 -111289441 + MER61A LTR ERV1 1 63 -280 4723 135 3 7 chr9 6573186 6573877 -111288750 - THE1-int LTR MaLR -264 1316 629 1830 166 7 7 chr9 6573894 6574196 -111288431 + AluJb SINE Alu 1 302 -10 15042 141 12 6 chr9 6574196 6576436 -111286191 - L1M1 LINE L1 -5301 2264 12 337 268 0 0 chr9 6576973 6577044 -111285583 - L1ME LINE L1 -539 5582 5512 311 243 112 57 chr9 6577053 6577190 -111285437 - MER5A DNA MER1_type -3 186 29 360 94 0 0 chr9 6577675 6577728 -111284899 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 803 215 0 0 chr9 6577728 6577872 -111284755 - AluSg/x SINE Alu -2 308 165 1781 186 3 0 chr9 6577877 6578173 -111284454 - AluJb SINE Alu -15 297 1 231 167 0 0 chr9 6578986 6579028 -111283599 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 294 154 282 0 chr9 6579174 6579252 -111283375 + MER67A LTR ERV1 1 100 -443 2112 183 39 39 chr9 6579320 6579784 -111282843 + MER67A LTR ERV1 80 543 0 2083 129 17 0 chr9 6580226 6580520 -111282107 - AluSx SINE Alu -13 299 1 2166 139 0 0 chr9 6580522 6580825 -111281802 - AluSx SINE Alu -9 303 1 1634 188 50 10 chr9 6580825 6581003 -111281624 - AluJo SINE Alu -1 311 115 2227 95 0 7 chr9 6581003 6581297 -111281330 - AluSg SINE Alu -18 292 1 1634 188 50 10 chr9 6581297 6581416 -111281211 - AluJo SINE Alu -197 115 2 1019 340 52 38 chr9 6581878 6582636 -111279991 + ERVL LTR ERVL 420 1187 -3809 1285 309 73 54 chr9 6582788 6583764 -111278863 + ERVL LTR ERVL 1449 2471 -3183 2324 84 3 0 chr9 6583764 6584080 -111278547 - AluSq SINE Alu 0 318 2 1285 309 73 54 chr9 6584080 6584221 -111278406 + ERVL LTR ERVL 2471 2608 -3046 2300 90 0 34 chr9 6584317 6584639 -111277988 + AluSx SINE Alu 1 311 -1 726 312 26 26 chr9 6585751 6586020 -111276607 - MER115 DNA AcHobo -391 302 34 184 342 165 13 chr9 6586025 6586183 -111276444 - L2 LINE L2 -378 2936 2755 252 130 0 0 chr9 6586926 6586972 -111275655 + (T)n Simple_repeat Simple_repeat 1 46 0 744 258 97 5 chr9 6587972 6588189 -111274438 + MIR SINE MIR 8 244 -18 744 157 58 8 chr9 6588267 6588388 -111274239 + FLAM_A SINE Alu 5 131 -2 2394 94 0 0 chr9 6589303 6589602 -111273025 - AluSg SINE Alu -11 299 1 1815 171 7 13 chr9 6590670 6590968 -111271659 - AluJo SINE Alu -14 298 3 2498 50 17 0 chr9 6591138 6591437 -111271190 + AluY SINE Alu 1 304 -7 290 194 16 16 chr9 6591761 6591823 -111270804 - MLT1B LTR MaLR -325 65 4 210 273 0 0 chr9 6591825 6591869 -111270758 - L2 LINE L2 -307 3006 2963 352 257 20 20 chr9 6591970 6592071 -111270556 + MIR SINE MIR 11 111 -151 1119 206 47 117 chr9 6592072 6592542 -111270085 - MER39 LTR ERV1 -2 705 269 932 149 0 37 chr9 6592587 6592748 -111269879 - FRAM SINE Alu -4 172 18 322 253 0 13 chr9 6592762 6592837 -111269790 - MER39 LTR ERV1 -633 74 1 530 292 13 0 chr9 6592837 6592991 -111269636 + MIR SINE MIR 107 262 0 1401 163 45 45 chr9 6593573 6593756 -111268871 - AluJo SINE Alu -17 295 110 1786 109 70 4 chr9 6593756 6594013 -111268614 + AluSx SINE Alu 1 274 -38 1401 163 45 45 chr9 6594013 6594118 -111268509 - AluJo SINE Alu -201 111 7 468 282 10 0 chr9 6594123 6594226 -111268401 + L2 LINE L2 3210 3313 0 6203 233 33 20 chr9 6594748 6596030 -111266597 - L1M4 LINE L1 -2075 4307 2990 2273 104 0 0 chr9 6596030 6596319 -111266308 - AluY SINE Alu -22 289 1 6203 233 33 20 chr9 6596319 6596879 -111265748 - L1M4 LINE L1 -3392 2990 2439 11243 170 93 62 chr9 6596889 6597076 -111265551 - L1MA4 LINE L1 -2 7319 7139 2416 67 3 3 chr9 6597076 6597373 -111265254 + AluY SINE Alu 1 297 -14 11243 170 93 62 chr9 6597373 6598561 -111264066 - L1MA4 LINE L1 -182 7139 5989 1947 158 0 13 chr9 6598561 6598877 -111263750 - AluJb SINE Alu 0 312 1 11243 170 93 62 chr9 6598877 6598988 -111263639 - L1MA4 LINE L1 -1332 5989 5883 1687 186 3 37 chr9 6598988 6599311 -111263316 + AluJo SINE Alu 1 312 0 11243 170 93 62 chr9 6599311 6599468 -111263159 - L1MA4 LINE L1 -1438 5883 5732 860 169 0 0 chr9 6599468 6599598 -111263029 - FLAM_C SINE Alu -11 132 3 11243 170 93 62 chr9 6599598 6601626 -111261001 - L1MA4 LINE L1 -1589 5732 3405 226 204 82 20 chr9 6601623 6601672 -111260955 - L1MA4 LINE L1 -6236 932 881 * 4310 236 54 2 chr9 6601673 6602573 -111260054 - L1MA4 LINE L1 -6216 952 6 40946 71 7 4 chr9 6602577 6608707 -111253920 - L1PA5 LINE L1 -1 6153 3 9064 138 51 88 chr9 6608707 6609008 -111253619 - L1M4 LINE L1 -3931 2453 2142 2376 96 0 13 chr9 6609008 6609322 -111253305 + AluY SINE Alu 1 310 -1 9064 138 51 88 chr9 6609322 6611560 -111251067 - L1M4 LINE L1 -4242 2142 14 1199 181 188 19 chr9 6612019 6612328 -111250299 - MLT1A1 LTR MaLR 0 365 5 319 316 85 69 chr9 6612851 6613308 -111249319 + L2 LINE L2 2616 3090 -182 21 0 0 0 chr9 6613710 6613731 -111248896 + AT_rich Low_complexity Low_complexity 1 21 0 679 198 93 0 chr9 6617609 6617771 -111244856 + L1 LINE L1 4170 4346 -1800 2871 10 0 0 chr9 6617774 6618085 -111244542 + AluYa5 SINE Alu 1 311 0 5195 118 7 23 chr9 6618088 6618951 -111243676 + L1PA16 LINE L1 5317 6165 -1 2044 178 18 13 chr9 6620958 6621341 -111241286 + MSTD LTR MaLR 1 385 -11 1218 152 107 49 chr9 6621815 6622093 -111240534 - AluJb SINE Alu 0 318 27 1865 173 84 13 chr9 6622387 6622780 -111239847 - MSTB LTR MaLR -4 422 2 594 183 40 40 chr9 6622783 6622909 -111239718 + FLAM_C SINE Alu 1 126 -17 207 69 0 0 chr9 6622910 6622939 -111239688 + (TTA)n Simple_repeat Simple_repeat 2 30 0 13924 198 47 18 chr9 6622939 6625926 -111236701 - L1PB1 LINE L1 -8 6859 3961 2277 109 0 0 chr9 6625926 6626229 -111236398 - AluSx SINE Alu -9 303 1 13924 198 47 18 chr9 6626229 6626449 -111236178 - L1PB1 LINE L1 -2906 3961 3749 2172 98 14 0 chr9 6626449 6626736 -111235891 - AluSc SINE Alu -16 293 3 13924 198 47 18 chr9 6626736 6627631 -111234996 - L1PB1 LINE L1 -3118 3749 2882 207 69 0 0 chr9 6627631 6627660 -111234967 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 13924 198 47 18 chr9 6627660 6630141 -111232486 - L1PB1 LINE L1 -3985 2882 1 688 133 38 0 chr9 6630187 6630292 -111232335 + FRAM SINE Alu 47 155 -21 21 36 0 0 chr9 6630292 6630320 -111232307 + AT_rich Low_complexity Low_complexity 1 28 0 255 226 0 0 chr9 6630345 6630407 -111232220 - HsTC2 DNA Tc2 -1836 62 1 532 227 102 6 chr9 6630647 6630823 -111231804 - L1ME3A LINE L1 -219 5951 5759 233 310 128 75 chr9 6631007 6631101 -111231526 + L2 LINE L2 2824 2912 -360 2023 136 16 48 chr9 6631101 6631477 -111231150 + THE1B LTR MaLR 1 364 0 233 310 128 75 chr9 6631477 6631608 -111231019 + L2 LINE L2 2912 3061 -211 283 150 0 0 chr9 6632131 6632191 -111230436 - L1MC3 LINE L1 0 7785 7726 370 184 178 55 chr9 6632337 6632500 -111230127 - L1ME LINE L1 -317 5804 5622 359 265 138 5 chr9 6632506 6632695 -111229932 - L1ME LINE L1 -517 5604 5391 1278 228 71 63 chr9 6632761 6633270 -111229357 - HAL1 LINE L1 -1992 515 3 241 224 15 15 chr9 6634471 6634538 -111228089 - MLT1L LTR MaLR -534 81 15 3326 234 109 26 chr9 6634558 6635727 -111226900 + HAL1 LINE L1 702 1967 -540 1600 109 9 0 chr9 6635991 6636212 -111226415 - AluSq SINE Alu -14 299 77 692 203 24 0 chr9 6636774 6636897 -111225730 + AluJb SINE Alu 141 266 -46 528 220 165 11 chr9 6636999 6637157 -111225470 - MER5A DNA MER1_type 0 189 4 501 290 10 62 chr9 6637535 6637728 -111224899 - MER5A DNA MER1_type -6 183 1 205 271 85 0 chr9 6637953 6638012 -111224615 - MIR3 SINE MIR -3 205 142 420 274 42 38 chr9 6638123 6638290 -111224337 - MIR3 SINE MIR -36 172 4 840 125 8 16 chr9 6638672 6638800 -111223827 + FLAM_C SINE Alu 7 133 -10 2329 110 0 16 chr9 6638806 6639123 -111223504 + AluSx SINE Alu 1 312 0 2126 134 3 0 chr9 6639685 6639983 -111222644 + AluJb SINE Alu 1 299 -13 2087 175 35 22 chr9 6639983 6640389 -111222238 + MLT2D LTR ERVL 4 414 0 265 353 15 45 chr9 6640519 6640652 -111221975 + L2 LINE L2 3144 3272 0 1053 277 95 25 chr9 6640712 6641082 -111221545 + L1ME LINE L1 4579 4922 -1240 2194 109 0 0 chr9 6641082 6641366 -111221261 - AluSx SINE Alu -24 288 5 1053 277 95 25 chr9 6641366 6642094 -111220533 + L1ME LINE L1 4922 5759 -403 41836 44 1 3 chr9 6643063 6649229 -111213398 - L1PA4 LINE L1 -3 6152 1 29 60 0 0 chr9 6649244 6649294 -111213333 + AT_rich Low_complexity Low_complexity 1 50 0 2051 118 0 0 chr9 6649434 6649705 -111212922 + AluSx SINE Alu 24 294 -18 237 259 0 0 chr9 6649857 6649911 -111212716 + MER21B LTR ERV1 40 93 -770 2158 94 0 60 chr9 6649911 6650229 -111212398 + AluSc SINE Alu 1 299 -10 1137 157 20 0 chr9 6650238 6650435 -111212192 + L1PB3 LINE L1 5953 6153 -1 1554 214 38 17 chr9 6650516 6651017 -111211610 + MER21B LTR ERV1 206 756 -107 2133 135 26 0 chr9 6651309 6651613 -111211014 - AluSx SINE Alu 0 312 1 252 0 0 0 chr9 6653374 6653402 -111209225 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 360 327 19 0 chr9 6653837 6653941 -111208686 - L2 LINE L2 -5 3267 3162 378 0 0 0 chr9 6654054 6654096 -111208531 + (TG)n Simple_repeat Simple_repeat 2 43 0 1364 120 16 38 chr9 6654119 6654251 -111208376 - L1MC1 LINE L1 -440 5893 5893 2330 112 0 6 chr9 6654251 6654564 -111208063 - AluSx SINE Alu -1 311 1 1364 120 16 38 chr9 6654564 6654796 -111207831 - L1MC1 LINE L1 -440 5893 5657 790 334 47 31 chr9 6654785 6655190 -111207437 - L1M4 LINE L1 -1109 5037 4640 * 2196 108 0 44 chr9 6655190 6655358 -111207269 - AluSx SINE Alu -11 301 152 2469 82 0 22 chr9 6655358 6655673 -111206954 - AluY SINE Alu -3 308 1 2196 108 0 44 chr9 6655673 6655819 -111206808 - AluSx SINE Alu -160 152 1 790 334 47 31 chr9 6655819 6656417 -111206210 - L1M4 LINE L1 -1506 4640 4018 565 313 51 47 chr9 6656454 6657000 -111205627 - L1M4 LINE L1 -2475 3671 3129 2176 127 7 0 chr9 6657000 6657307 -111205320 - AluSx SINE Alu -3 309 1 565 313 51 47 chr9 6657307 6657428 -111205199 - L1M4 LINE L1 -3017 3129 3010 1715 209 64 43 chr9 6657428 6657896 -111204731 + MER31A LTR ERV1 4 481 -4 565 313 51 47 chr9 6657896 6658491 -111204136 - L1M4 LINE L1 -3136 3010 2402 297 73 0 0 chr9 6658566 6658607 -111204020 - HERVL LTR ERVL -4275 1379 1339 6379 132 14 13 chr9 6658608 6660644 -111201983 + L1MA2 LINE L1 4266 6304 0 2491 60 0 7 chr9 6660964 6661266 -111201361 - AluY SINE Alu -11 300 1 231 36 0 0 chr9 6661273 6661301 -111201326 + (T)n Simple_repeat Simple_repeat 1 28 0 1767 159 43 7 chr9 6661715 6662016 -111200611 - AluJb SINE Alu 0 312 1 234 279 0 15 chr9 6662016 6662084 -111200543 - MER5A DNA MER1_type -113 76 10 397 257 86 29 chr9 6662113 6662253 -111200374 - MIR SINE MIR -75 187 40 1168 152 15 10 chr9 6662285 6662482 -111200145 - L1MC2 LINE L1 -8 6336 6139 249 191 79 11 chr9 6662486 6662559 -111200068 + Tigger3(Golem) DNA MER2_type 240 321 -910 212 57 0 29 chr9 6662559 6662594 -111200033 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 249 191 79 11 chr9 6662594 6662609 -111200018 + Tigger3(Golem) DNA MER2_type 321 334 -897 1081 119 57 23 chr9 6664008 6664185 -111198442 + MER46A DNA MER2_type 54 236 0 30 0 0 0 chr9 6664371 6664401 -111198226 + AT_rich Low_complexity Low_complexity 1 30 0 2007 87 42 19 chr9 6666008 6666318 -111196309 + Tigger3b DNA MER2_type 343 659 -572 1368 158 14 0 chr9 6666331 6666553 -111196074 - Tigger3b DNA MER2_type -1006 225 1 2449 146 55 55 chr9 6666553 6667041 -111195586 - L1MC2 LINE L1 -410 5923 5436 583 172 31 2 chr9 6667316 6667429 -111195198 - L1ME1 LINE L1 -2 6332 6058 225 152 0 0 chr9 6667429 6667462 -111195165 - MER3 DNA MER1_type -160 49 17 372 177 210 18 chr9 6667462 6667584 -111195043 - L1ME1 LINE L1 -149 6017 5877 451 237 17 0 chr9 6668116 6668234 -111194393 - L1ME1 LINE L1 -1084 5062 4943 211 125 0 71 chr9 6668264 6668320 -111194307 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 427 252 17 0 chr9 6668396 6668515 -111194112 - L1MC2 LINE L1 -1083 5063 4943 210 168 0 69 chr9 6668515 6668616 -111194011 + CT-rich Low_complexity Low_complexity 1 94 0 1432 236 64 12 chr9 6668619 6669038 -111193589 - L1MC2 LINE L1 -1199 4947 4507 713 180 47 0 chr9 6669481 6669609 -111193018 - AluJo SINE Alu -176 136 3 3222 141 37 8 chr9 6670203 6670713 -111191914 + LTR45 LTR ERV1 1 525 0 263 322 76 64 chr9 6670970 6671141 -111191486 + LTR16C LTR ERVL 78 250 -241 887 272 35 31 chr9 6671146 6671436 -111191191 + LTR16C LTR ERVL 201 491 0 5079 156 14 34 chr9 6671801 6671892 -111190735 + L1MB3 LINE L1 5173 5264 -919 2231 122 3 0 chr9 6671892 6672196 -111190431 + AluSx SINE Alu 1 305 -7 2107 116 0 7 chr9 6672196 6672489 -111190138 + AluSx SINE Alu 1 292 -20 5079 156 14 34 chr9 6672489 6672506 -111190121 + L1MB3 LINE L1 5263 5279 -904 2558 53 0 0 chr9 6672506 6672805 -111189822 + AluY SINE Alu 1 299 -12 5079 156 14 34 chr9 6672805 6673351 -111189276 + L1MB3 LINE L1 5279 5807 -376 1751 179 0 3 chr9 6673351 6673648 -111188979 + AluJb SINE Alu 1 296 -16 5079 156 14 34 chr9 6673648 6674016 -111188611 + L1MB3 LINE L1 5807 6181 -2 631 145 36 114 chr9 6674936 6675129 -111187498 - MER5B DNA MER1_type 0 178 1 234 208 14 69 chr9 6675608 6675680 -111186947 - MER5A DNA MER1_type -113 76 9 366 85 0 0 chr9 6675791 6675850 -111186777 + (TATG)n Simple_repeat Simple_repeat 2 60 0 421 196 101 101 chr9 6675908 6675972 -111186655 - MER5A DNA MER1_type 0 189 126 2402 93 3 0 chr9 6675972 6676284 -111186343 + AluSp SINE Alu 1 313 0 421 196 101 101 chr9 6676284 6676408 -111186219 - MER5A DNA MER1_type -62 127 1 685 274 41 53 chr9 6676588 6676939 -111185688 + MLT1G1 LTR MaLR 1 389 -206 300 185 111 0 chr9 6676996 6677077 -111185550 + MLT1G1 LTR MaLR 501 590 0 208 269 0 0 chr9 6677277 6677329 -111185298 + (TAA)n Simple_repeat Simple_repeat 3 54 0 530 198 0 0 chr9 6677332 6677428 -111185199 - MIR SINE MIR -29 233 138 544 208 8 54 chr9 6677641 6677771 -111184856 + FLAM_A SINE Alu 1 124 -9 29 0 0 0 chr9 6678128 6678157 -111184470 + AT_rich Low_complexity Low_complexity 1 29 0 267 31 0 0 chr9 6679366 6679398 -111183229 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1732 166 18 3 chr9 6679401 6679685 -111182942 - AluJb SINE Alu -24 288 1 894 75 17 0 chr9 6679810 6679930 -111182697 + AluSp/q SINE Alu 181 302 -11 1464 88 0 10 chr9 6679930 6680122 -111182505 + AluY SINE Alu 1 190 -121 690 0 0 0 chr9 6680122 6680198 -111182429 + AluY SINE Alu 57 132 -179 2072 115 0 3 chr9 6680202 6680498 -111182129 + AluY SINE Alu 1 295 -16 2478 34 7 17 chr9 6680504 6680832 -111181795 + AluY SINE Alu 1 311 0 336 200 24 12 chr9 6681415 6681500 -111181127 - MIR SINE MIR -121 141 56 1694 169 0 44 chr9 6681639 6681958 -111180669 + AluJb SINE Alu 1 305 -7 886 224 0 0 chr9 6682009 6682174 -111180453 + FRAM SINE Alu 1 164 -12 1932 99 4 4 chr9 6682176 6682439 -111180188 + AluSq SINE Alu 1 263 -50 275 193 0 0 chr9 6682541 6682598 -111180029 + AluSq SINE Alu 245 301 -1 195 42 0 0 chr9 6682852 6682876 -111179751 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2099 131 3 3 chr9 6683030 6683327 -111179300 - AluSp SINE Alu -16 297 1 2474 81 0 7 chr9 6683327 6683634 -111178993 - AluSx SINE Alu -7 305 1 474 18 0 0 chr9 6683640 6683695 -111178932 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1987 101 4 0 chr9 6683699 6683956 -111178671 - AluSx SINE Alu -32 280 23 1975 136 3 7 chr9 6683964 6684279 -111178348 - AluSx SINE Alu 0 314 1 2288 84 3 0 chr9 6684811 6685130 -111177497 - AluSx SINE Alu 0 320 1 1424 206 17 24 chr9 6685138 6685434 -111177193 - AluJo SINE Alu -18 294 1 1032 201 14 5 chr9 6685442 6685651 -111176976 - AluJb SINE Alu 0 312 102 555 147 147 0 chr9 6685651 6685753 -111176874 + FLAM_C SINE Alu 1 117 -26 2001 154 0 3 chr9 6685766 6686077 -111176550 - AluJb SINE Alu -2 310 1 606 213 12 50 chr9 6686254 6686405 -111176222 + AluJb SINE Alu 157 303 -9 1800 169 23 10 chr9 6686405 6686713 -111175914 + AluSx SINE Alu 1 312 0 2404 93 0 0 chr9 6686903 6687205 -111175422 + AluSg1 SINE Alu 1 302 -7 495 236 260 24 chr9 6687205 6687413 -111175214 + Zaphod DNA AcHobo 383 639 -3392 2322 99 3 3 chr9 6687413 6687715 -111174912 + AluSx SINE Alu 1 302 -10 1378 53 0 6 chr9 6687770 6687939 -111174688 + AluY SINE Alu 136 303 -8 254 182 18 0 chr9 6687971 6688026 -111174601 + Zaphod DNA AcHobo 673 728 -3303 2108 119 10 0 chr9 6688026 6688321 -111174306 + AluSx SINE Alu 1 298 -14 2179 179 87 50 chr9 6688330 6688789 -111173838 + MER21A LTR ERV1 386 861 -70 1045 186 6 0 chr9 6688789 6688972 -111173655 - AluSg/x SINE Alu -8 302 119 567 168 71 9 chr9 6689248 6689361 -111173266 + FLAM_C SINE Alu 12 131 -12 23 0 0 0 chr9 6689390 6689413 -111173214 + AT_rich Low_complexity Low_complexity 1 23 0 2214 109 0 7 chr9 6689417 6689711 -111172916 - AluSc SINE Alu -17 292 1 2381 74 0 0 chr9 6689716 6690024 -111172603 - AluY SINE Alu 0 308 1 893 186 47 131 chr9 6690030 6690390 -111172237 + MER34C LTR ERV1 256 585 0 2077 128 3 7 chr9 6690509 6690806 -111171821 - AluSx SINE Alu -16 296 1 2540 70 3 0 chr9 6691896 6692198 -111170429 - AluSx SINE Alu -9 303 1 207 0 0 0 chr9 6692210 6692233 -111170394 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2158 105 7 0 chr9 6692410 6692696 -111169931 - AluSg SINE Alu -21 289 2 2161 111 0 26 chr9 6692901 6693207 -111169420 - AluSx SINE Alu -14 298 1 23 33 0 0 chr9 6693913 6693943 -111168684 + AT_rich Low_complexity Low_complexity 1 30 0 1327 167 77 42 chr9 6694150 6694437 -111168190 + AluJo SINE Alu 1 297 -15 1941 142 10 10 chr9 6694457 6694753 -111167874 - AluSx SINE Alu -16 296 1 859 229 0 0 chr9 6694763 6694938 -111167689 - FAM SINE Alu 0 175 1 1210 107 6 0 chr9 6697186 6697345 -111165282 - AluSp SINE Alu -51 262 103 2225 102 9 19 chr9 6697596 6697911 -111164716 - AluSx SINE Alu 0 312 1 2365 99 0 0 chr9 6698127 6698421 -111164206 + AluSg SINE Alu 3 296 -14 261 0 0 0 chr9 6699069 6699098 -111163529 + (TA)n Simple_repeat Simple_repeat 2 30 0 2370 178 93 8 chr9 6699118 6699624 -111163003 + MER89 LTR ERV1 1 549 -10 226 280 28 28 chr9 6700264 6700371 -111162256 - L1ME4a LINE L1 -48 6073 5967 805 274 51 8 chr9 6700903 6701137 -111161490 + MIR SINE MIR 8 251 -11 2311 105 0 3 chr9 6701661 6701966 -111160661 + AluSx SINE Alu 5 308 -4 1783 179 3 3 chr9 6702296 6702608 -111160019 - AluJo SINE Alu 0 312 1 2257 105 13 0 chr9 6703164 6703470 -111159157 + AluSx SINE Alu 1 310 -2 195 42 0 0 chr9 6703474 6703498 -111159129 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 461 154 0 0 chr9 6705142 6705207 -111157420 - HERVL18 LTR ERVL -3265 2782 2718 * 1197 155 64 2 chr9 6705204 6705464 -111157163 - HERVL18 LTR ERVL -3595 2452 2119 2697 196 14 26 chr9 6705489 6706368 -111156259 - HERVL18 LTR ERVL -4425 1622 56 385 256 2 2 chr9 6706469 6706559 -111156068 - AluJ/FLAM SINE Alu -227 75 1 2435 86 3 0 chr9 6706676 6706977 -111155650 + AluSp SINE Alu 1 302 -11 1192 38 0 0 chr9 6706977 6707109 -111155518 + AluY SINE Alu 1 132 -179 2357 71 0 7 chr9 6707113 6707410 -111155217 + AluY SINE Alu 1 295 -16 2230 42 46 18 chr9 6707410 6707727 -111154900 + AluY SINE Alu 1 311 0 336 200 24 12 chr9 6708310 6708395 -111154232 - MIR SINE MIR -121 141 56 1744 163 0 44 chr9 6708534 6708853 -111153774 + AluJb SINE Alu 1 305 -7 904 218 0 0 chr9 6708904 6709069 -111153558 + FRAM SINE Alu 1 164 -12 370 64 0 0 chr9 6709071 6709118 -111153509 + Alu SINE Alu 1 47 -255 23 0 0 0 chr9 6709236 6709259 -111153368 + AT_rich Low_complexity Low_complexity 1 23 0 815 173 0 0 chr9 6710170 6710303 -111152324 + AluJo/FLAM SINE Alu 1 133 -169 1441 127 5 9 chr9 6710306 6710519 -111152108 + AluSp SINE Alu 1 212 -101 452 240 202 8 chr9 6710535 6710664 -111151963 - AluJo SINE Alu -38 274 121 553 44 15 0 chr9 6710664 6710732 -111151895 - L1PA8 LINE L1 -319 5853 5785 2108 166 44 70 chr9 6710733 6711051 -111151576 - Tigger7 DNA MER2_type -308 425 119 2381 89 10 0 chr9 6711051 6711355 -111151272 + AluSp SINE Alu 1 307 -6 2108 166 44 70 chr9 6711355 6711464 -111151163 - Tigger7 DNA MER2_type -614 119 9 394 310 84 0 chr9 6711488 6711643 -111150984 - L1MCb LINE L1 -5308 737 570 486 286 34 7 chr9 6711735 6711882 -111150745 - L1MCb LINE L1 -5471 574 424 279 176 0 44 chr9 6711884 6711952 -111150675 - L1MCb LINE L1 -5772 273 209 2068 127 0 0 chr9 6711991 6712274 -111150353 - AluSx SINE Alu -16 296 14 405 182 0 0 chr9 6712279 6712356 -111150271 - AluJ/FRAM SINE Alu -7 305 229 671 61 0 0 chr9 6712456 6712538 -111150089 - AluY SINE Alu -228 83 2 * 741 164 16 0 chr9 6712538 6712657 -111149970 + AluSg/x SINE Alu 181 301 -9 1558 162 4 0 chr9 6712672 6712937 -111149690 + AluJb SINE Alu 16 281 -31 916 136 8 0 chr9 6712937 6712976 -111149651 + AluJo SINE Alu 16 320 0 963 280 15 19 chr9 6712981 6713249 -111149378 + LTR16B LTR ERVL 109 375 -89 400 243 0 0 chr9 6713909 6713983 -111148644 + FRAM SINE Alu 77 150 -26 1297 226 7 13 chr9 6714001 6714311 -111148316 + AluJb SINE Alu 3 310 -2 1339 151 29 59 chr9 6714334 6714431 -111148196 + L1MC1 LINE L1 6059 6157 -176 2056 115 7 3 chr9 6714431 6714726 -111147901 + AluSx SINE Alu 1 296 -16 1339 151 29 59 chr9 6714726 6714900 -111147727 + L1MC1 LINE L1 6157 6322 -11 1779 150 10 10 chr9 6714901 6715201 -111147426 + AluJo SINE Alu 1 300 -12 1986 110 0 0 chr9 6715212 6715485 -111147142 + AluSx SINE Alu 3 275 -37 1883 97 6 61 chr9 6715515 6715826 -111146801 + AluSq SINE Alu 3 296 -17 1792 144 6 52 chr9 6715848 6716174 -111146453 - AluSx SINE Alu -1 311 1 716 124 66 25 chr9 6716262 6716383 -111146244 - FLAM_C SINE Alu -4 139 14 1836 153 3 16 chr9 6716862 6717175 -111145452 + AluSx SINE Alu 1 309 -3 1100 207 195 0 chr9 6717505 6717766 -111144861 + MER21B LTR ERV1 1 312 -551 1055 82 0 0 chr9 6717767 6717902 -111144725 + AluSq/x SINE Alu 1 135 -177 2296 74 0 0 chr9 6717902 6718199 -111144428 + AluY SINE Alu 1 297 -14 2403 168 85 78 chr9 6718208 6718667 -111143960 + MER21A LTR ERV1 386 851 -80 1830 148 3 23 chr9 6718667 6718977 -111143650 - AluSx SINE Alu -8 304 1 2403 168 85 78 chr9 6718977 6719059 -111143568 + MER21A LTR ERV1 851 931 0 2020 68 79 7 chr9 6719221 6719501 -111143126 - AluSp SINE Alu -13 300 1 2149 109 0 0 chr9 6719600 6719894 -111142733 - AluSg SINE Alu -15 295 2 194 125 0 25 chr9 6719945 6719985 -111142642 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 1922 117 11 3 chr9 6720060 6720369 -111142258 + AluSx SINE Alu 1 311 0 370 174 315 0 chr9 6720435 6720527 -111142100 + FLAM_A SINE Alu 1 121 -12 37 0 0 0 chr9 6720748 6720785 -111141842 + AT_rich Low_complexity Low_complexity 1 37 0 803 206 11 29 chr9 6720785 6720924 -111141703 + AluJo SINE Alu 1 138 -174 2335 78 0 0 chr9 6720924 6721219 -111141408 + AluSx SINE Alu 1 295 -17 803 206 11 29 chr9 6721219 6721254 -111141373 + AluJo SINE Alu 138 172 -140 267 115 39 167 chr9 6721256 6721319 -111141308 + FAM SINE Alu 116 185 -126 2038 125 0 0 chr9 6721319 6721616 -111141011 + AluSx SINE Alu 2 298 -14 809 135 0 8 chr9 6721617 6721750 -111140877 + FLAM_C SINE Alu 1 132 -1 267 115 39 167 chr9 6721750 6721762 -111140865 + FAM SINE Alu 161 173 -2 965 291 139 58 chr9 6721978 6722317 -111140310 + ERVL LTR ERVL 884 1194 -4460 1792 135 36 30 chr9 6722317 6722621 -111140006 + AluJb SINE Alu 3 308 -4 965 291 139 58 chr9 6722621 6723195 -111139432 + ERVL LTR ERVL 1194 1827 -3827 619 133 0 0 chr9 6723316 6723414 -111139213 + AluSg/x SINE Alu 209 306 -3 312 172 35 0 chr9 6723415 6723473 -111139154 + AluY SINE Alu 129 188 -113 753 149 8 22 chr9 6723523 6723657 -111138970 - FLAM_C SINE Alu 0 133 2 2100 110 0 0 chr9 6723672 6723962 -111138665 - AluSq SINE Alu -22 291 2 2355 61 3 0 chr9 6724020 6724313 -111138314 - AluY SINE Alu -17 294 1 957 191 60 101 chr9 6724315 6724681 -111137946 + MER34C LTR ERV1 235 585 0 1998 118 3 7 chr9 6724800 6725096 -111137531 - AluSx SINE Alu -17 295 1 2250 86 3 0 chr9 6726185 6726486 -111136141 - AluSx SINE Alu -10 302 1 207 0 0 0 chr9 6726498 6726521 -111136106 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2037 105 7 0 chr9 6726698 6726984 -111135643 - AluSg SINE Alu -21 289 2 2056 108 0 23 chr9 6727189 6727494 -111135133 - AluSx SINE Alu -14 298 1 263 254 228 9 chr9 6728164 6728278 -111134349 + MIR SINE MIR 82 220 -42 387 60 0 0 chr9 6728323 6728373 -111134254 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1767 139 21 0 chr9 6728413 6728701 -111133926 + AluJb SINE Alu 8 301 -11 878 164 18 12 chr9 6728854 6729025 -111133602 + AluJo SINE Alu 126 297 -15 208 222 42 69 chr9 6729101 6729173 -111133454 + MIR SINE MIR 193 262 0 2143 48 44 0 chr9 6730135 6730432 -111132195 - AluY SINE Alu 0 309 1 823 195 84 97 chr9 6731662 6731970 -111130657 + MER2 DNA MER2_type 42 345 0 305 340 113 5 chr9 6732012 6732215 -111130412 - MIR SINE MIR -18 244 20 314 89 0 0 chr9 6732428 6732473 -111130154 - MADE1 DNA Mariner -4 76 32 2071 89 14 0 chr9 6732473 6732764 -111129863 + AluSx SINE Alu 1 295 -17 1208 128 0 0 chr9 6732766 6732946 -111129681 + AluSq SINE Alu 134 313 0 951 199 0 0 chr9 6733072 6733238 -111129389 - AluJb SINE Alu -13 299 134 1883 106 65 0 chr9 6733238 6733513 -111129114 - AluSx SINE Alu -19 293 1 235 284 43 9 chr9 6733519 6733635 -111128992 - L1ME LINE L1 -338 5783 5664 621 118 0 0 chr9 6733779 6733864 -111128763 + AluY SINE Alu 207 291 -20 1410 165 120 39 chr9 6734033 6734206 -111128421 - MSTD LTR MaLR -2 394 236 2008 121 7 3 chr9 6734206 6734503 -111128124 - AluSx SINE Alu -14 298 1 1410 165 120 39 chr9 6734503 6734638 -111127989 - MSTD LTR MaLR -160 236 61 418 269 45 87 chr9 6734753 6735002 -111127625 + MIR SINE MIR 23 260 -2 2099 96 0 53 chr9 6735548 6735870 -111126757 - AluSg SINE Alu -5 305 1 1626 176 0 20 chr9 6735873 6736174 -111126453 - AluJo SINE Alu -17 295 1 192 395 45 13 chr9 6736174 6736331 -111126296 + L2 LINE L2 2517 2678 -636 2162 111 3 0 chr9 6736363 6736670 -111125957 + AluSp SINE Alu 1 308 -5 2194 100 0 10 chr9 6737159 6737459 -111125168 - AluSg SINE Alu -13 297 1 2182 112 0 6 chr9 6737545 6737858 -111124769 - AluSx SINE Alu -1 311 1 373 327 79 16 chr9 6737858 6738148 -111124479 + L2 LINE L2 2772 3081 -191 629 212 80 7 chr9 6738221 6738372 -111124255 + AluJb SINE Alu 134 295 -17 1474 115 0 0 chr9 6738913 6739122 -111123505 + AluSg/x SINE Alu 92 300 -10 1906 155 0 0 chr9 6739274 6739583 -111123044 + AluSx SINE Alu 1 309 -3 416 291 147 103 chr9 6739588 6739995 -111122632 + L1MEd LINE L1 66 513 -5606 1992 103 26 0 chr9 6739995 6740318 -111122309 + AluSg SINE Alu 1 330 0 416 291 147 103 chr9 6740318 6740541 -111122086 + L1MEd LINE L1 513 725 -5394 1136 189 12 87 chr9 6740550 6740698 -111121929 + AluJb SINE Alu 5 116 -196 2125 94 3 26 chr9 6740698 6741006 -111121621 + AluSq SINE Alu 1 301 -12 1136 189 12 87 chr9 6741006 6741190 -111121437 + AluJb SINE Alu 116 312 0 376 192 50 20 chr9 6741261 6741360 -111121267 + L1MC5 LINE L1 7336 7437 -524 604 274 63 83 chr9 6741381 6741613 -111121014 - L1 LINE L1 -2084 4062 3827 1516 79 26 40 chr9 6741613 6741840 -111120787 + AluSx SINE Alu 1 224 -88 604 274 63 83 chr9 6741840 6742269 -111120358 - L1 LINE L1 -2319 3827 3442 1837 129 33 0 chr9 6743334 6743636 -111118991 - AluJb SINE Alu 0 312 1 648 105 0 11 chr9 6743761 6743856 -111118771 + FLAM_C SINE Alu 34 127 -16 2099 110 7 0 chr9 6743864 6744174 -111118453 + AluSp SINE Alu 1 312 -1 2489 47 0 0 chr9 6744403 6744701 -111117926 - AluY SINE Alu -13 298 1 202 303 210 12 chr9 6744761 6744923 -111117704 + MIR SINE MIR 48 241 -21 1504 204 92 36 chr9 6745007 6745426 -111117201 + MER39 LTR ERV1 269 565 0 2255 100 0 0 chr9 6745490 6745799 -111116828 - AluSx SINE Alu -3 309 1 2141 103 3 10 chr9 6745831 6746142 -111116485 + AluSx SINE Alu 3 311 -1 195 42 0 0 chr9 6746387 6746411 -111116216 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1992 128 3 3 chr9 6746565 6746862 -111115765 - AluSp SINE Alu -16 297 1 2121 114 0 10 chr9 6746862 6747170 -111115457 - AluSx SINE Alu -7 305 1 1959 97 0 0 chr9 6747176 6747490 -111115137 - AluSc SINE Alu 0 336 23 1669 176 0 0 chr9 6747498 6747811 -111114816 - AluJb SINE Alu 0 313 1 2161 84 3 0 chr9 6748343 6748662 -111113965 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 6748670 6748966 -111113661 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 6748974 6749183 -111113444 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 6749183 6749285 -111113342 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 6749298 6749609 -111113018 - AluJb SINE Alu -2 310 1 2188 92 3 7 chr9 6749676 6749981 -111112646 + AluSx SINE Alu 1 304 -8 1542 170 44 27 chr9 6750271 6750634 -111111993 - L1MA7 LINE L1 -100 6200 5825 974 166 0 12 chr9 6750641 6750804 -111111823 - AluJb SINE Alu -18 294 134 2146 105 0 0 chr9 6750804 6751098 -111111529 - AluSc SINE Alu -15 294 1 2060 124 0 3 chr9 6751103 6751401 -111111226 - AluSx SINE Alu -15 297 1 294 202 11 79 chr9 6751649 6751738 -111110889 - MER34B LTR ERV1 -448 117 35 259 161 18 18 chr9 6751901 6751957 -111110670 - AluSp SINE Alu -133 170 115 21 0 0 0 chr9 6752125 6752146 -111110481 + AT_rich Low_complexity Low_complexity 1 21 0 1890 155 0 0 chr9 6752146 6752442 -111110185 + AluSx SINE Alu 1 296 -16 1510 157 20 38 chr9 6752455 6752620 -111110007 - AluJo SINE Alu -14 298 139 2211 113 3 0 chr9 6752620 6752931 -111109696 - AluSx SINE Alu 0 312 1 1510 157 20 38 chr9 6752931 6753058 -111109569 - AluJo SINE Alu -173 139 11 754 133 18 0 chr9 6753185 6753298 -111109329 + AluSq/x SINE Alu 2 116 -196 1479 96 58 139 chr9 6753302 6753323 -111109304 - MER4C-int LTR ERV1 -4278 1268 1247 2199 114 0 0 chr9 6753323 6753630 -111108997 + AluSq SINE Alu 1 307 -6 1479 96 58 139 chr9 6753630 6753868 -111108759 - MER4C-int LTR ERV1 -4299 1247 991 2042 111 14 0 chr9 6753868 6754165 -111108462 - AluSg SINE Alu -9 301 1 1479 96 58 139 chr9 6754165 6754224 -111108403 - MER4C-int LTR ERV1 -4555 991 511 235 178 0 44 chr9 6754244 6754289 -111108338 - LTR49 LTR ERV1 -282 313 271 309 143 0 0 chr9 6754356 6754405 -111108222 - MER4C-int LTR ERV1 -5799 799 751 713 229 227 24 chr9 6754416 6754863 -111107764 - MER4C-int LTR ERV1 -6009 589 1 489 144 264 8 chr9 6754884 6755009 -111107618 - MER4C LTR ERV1 -18 447 291 358 195 98 89 chr9 6755064 6755187 -111107440 - MER4A LTR ERV1 -322 342 219 1800 86 89 51 chr9 6755187 6755479 -111107148 + AluSq SINE Alu 1 303 -10 412 16 16 0 chr9 6755501 6755562 -111107065 - AluY SINE Alu -1 309 248 2562 39 0 0 chr9 6755662 6755967 -111106660 - AluY SINE Alu -6 305 1 983 149 11 17 chr9 6755988 6756163 -111106464 - MER4A LTR ERV1 -490 174 1 706 168 61 26 chr9 6756204 6756420 -111106207 + MLT1A1 LTR MaLR 207 365 0 1641 138 145 59 chr9 6757093 6757305 -111105322 - LTR54B LTR ERV1 -4 494 302 1953 107 10 24 chr9 6757305 6757603 -111105024 - AluSx SINE Alu -18 294 1 1641 138 145 59 chr9 6757603 6757711 -111104916 - LTR54B LTR ERV1 -196 302 205 2210 108 7 0 chr9 6757711 6758018 -111104609 - AluSc SINE Alu 0 309 1 1641 138 145 59 chr9 6758018 6758151 -111104476 - LTR54B LTR ERV1 -293 205 1 1125 268 135 39 chr9 6758154 6758359 -111104268 + Zaphod DNA AcHobo 186 370 -3661 2265 92 0 3 chr9 6758359 6758663 -111103964 + AluSg SINE Alu 1 303 -7 1125 268 135 39 chr9 6758663 6758871 -111103756 + Zaphod DNA AcHobo 370 639 -3392 2191 99 3 3 chr9 6758871 6759173 -111103454 + AluSx SINE Alu 1 302 -10 1321 53 0 6 chr9 6759228 6759399 -111103228 + AluY SINE Alu 136 305 -6 389 176 73 94 chr9 6759420 6759485 -111103142 + Zaphod DNA AcHobo 663 728 -3303 2068 108 10 0 chr9 6759485 6759780 -111102847 + AluSx SINE Alu 1 298 -14 389 176 73 94 chr9 6759780 6759866 -111102761 + Zaphod DNA AcHobo 728 810 -3221 881 159 38 6 chr9 6759866 6760023 -111102604 - FRAM SINE Alu -4 162 1 389 176 73 94 chr9 6760023 6760103 -111102524 + Zaphod DNA AcHobo 810 890 -3141 2152 96 3 3 chr9 6760106 6760399 -111102228 + AluSq SINE Alu 1 293 -20 21 57 0 0 chr9 6760408 6760443 -111102184 + AT_rich Low_complexity Low_complexity 1 35 0 241 180 0 20 chr9 6760447 6760497 -111102130 - LTR59 LTR ERV1 -78 519 471 321 155 12 36 chr9 6760568 6760652 -111101975 + Zaphod DNA AcHobo 909 990 -3041 1065 111 0 0 chr9 6760666 6760819 -111101808 - AluSp/q SINE Alu 0 313 161 2192 102 16 0 chr9 6760866 6761169 -111101458 + AluSx SINE Alu 1 308 -4 1678 152 47 7 chr9 6761216 6761513 -111101114 + AluJb SINE Alu 1 309 -3 208 200 213 12 chr9 6761558 6761638 -111100989 + MIR SINE MIR 122 217 -45 778 263 50 93 chr9 6761672 6761922 -111100705 - L2 LINE L2 -43 3270 3048 2066 100 0 62 chr9 6761922 6762243 -111100384 - AluSx SINE Alu -11 301 1 778 263 50 93 chr9 6762243 6762456 -111100171 - L2 LINE L2 -265 3048 2827 423 233 100 0 chr9 6762456 6762576 -111100051 + LTR33 LTR ERVL 2 133 -388 649 241 120 49 chr9 6762668 6762934 -111099693 + LTR33 LTR ERVL 235 519 -2 2323 252 90 26 chr9 6762939 6763433 -111099194 - L2 LINE L2 -498 2816 2254 2494 61 0 0 chr9 6763433 6763744 -111098883 + AluY SINE Alu 1 311 0 2323 252 90 26 chr9 6763744 6764012 -111098615 - L2 LINE L2 -1060 2254 2005 736 147 133 21 chr9 6764026 6764169 -111098458 + AluSg/x SINE Alu 141 299 -13 2257 47 40 7 chr9 6764169 6764470 -111098157 + AluY SINE Alu 1 311 0 1182 96 0 0 chr9 6765388 6765554 -111097073 + AluSg/x SINE Alu 132 297 -15 2180 86 7 13 chr9 6766631 6766934 -111095693 + AluSg SINE Alu 2 302 -8 1988 139 0 0 chr9 6767125 6767427 -111095200 + AluSx SINE Alu 7 308 -4 1606 112 37 121 chr9 6767577 6767954 -111094673 - MER4A LTR ERV1 0 664 261 539 160 0 20 chr9 6767954 6768054 -111094573 - MER4A LTR ERV1 -566 98 1 268 253 190 0 chr9 6768054 6768132 -111094495 + MLT1G1 LTR MaLR 297 389 -206 2177 164 9 83 chr9 6768416 6768494 -111094133 + MER70A LTR ERVL 1 83 -389 1876 146 14 0 chr9 6768494 6768781 -111093846 - AluSx SINE Alu -21 291 1 2177 164 9 83 chr9 6768781 6768804 -111093823 + MER70A LTR ERVL 83 106 -366 2126 91 3 23 chr9 6768804 6769111 -111093516 + AluSp SINE Alu 1 301 -12 2177 164 9 83 chr9 6769111 6769429 -111093198 + MER70A LTR ERVL 106 390 -82 364 188 58 0 chr9 6769530 6769599 -111093028 + MER70A LTR ERVL 400 472 0 1889 101 69 3 chr9 6769635 6769923 -111092704 + AluSx SINE Alu 1 307 -5 1098 235 0 0 chr9 6770048 6770244 -111092383 + LTR28 LTR ERV1 1 196 -824 29 0 0 0 chr9 6770244 6770273 -111092354 + AT_rich Low_complexity Low_complexity 1 29 0 315 252 126 8 chr9 6770273 6770392 -111092235 - L1MCa LINE L1 -4361 2065 1933 430 240 116 8 chr9 6770415 6770544 -111092083 + LTR28 LTR ERV1 202 344 -676 607 275 18 30 chr9 6770549 6770716 -111091911 + MER61D LTR ERV1 337 501 0 1237 225 3 40 chr9 6770770 6770904 -111091723 + AluJo SINE Alu 4 141 -171 2175 120 0 0 chr9 6770904 6771213 -111091414 + AluSx SINE Alu 1 309 -3 1237 225 3 40 chr9 6771213 6771376 -111091251 + AluJo SINE Alu 141 290 -22 1990 118 3 13 chr9 6771430 6771734 -111090893 - AluSc SINE Alu 0 309 9 2138 118 0 0 chr9 6771751 6772056 -111090571 - AluSx SINE Alu -7 305 1 2129 106 0 13 chr9 6772061 6772363 -111090264 - AluSx SINE Alu -14 298 1 561 126 23 0 chr9 6772412 6772499 -111090128 + AluSg SINE Alu 12 100 -210 2327 78 0 10 chr9 6772806 6773114 -111089513 - AluSq SINE Alu -8 305 1 238 122 73 0 chr9 6773624 6773665 -111088962 + MER57A LTR ERV1 295 338 -65 1492 206 3 10 chr9 6773686 6773992 -111088635 + AluJb SINE Alu 5 308 -4 2106 97 10 0 chr9 6774057 6774357 -111088270 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 6774415 6774444 -111088183 + AT_rich Low_complexity Low_complexity 1 29 0 712 168 0 8 chr9 6774444 6774563 -111088064 - FLAM_C SINE Alu -15 118 1 4003 173 43 8 chr9 6774621 6775373 -111087254 - L1MB7 LINE L1 -16 6168 5391 741 176 0 0 chr9 6775413 6775544 -111087083 - FLAM_C SINE Alu -3 140 10 706 203 27 20 chr9 6776183 6776331 -111086296 - FRAM SINE Alu -30 146 1 306 296 51 0 chr9 6777145 6777243 -111085384 - L1M4 LINE L1 -2971 3175 3073 531 66 0 0 chr9 6777243 6777319 -111085308 + (CTTG)n Simple_repeat Simple_repeat 2 77 0 1819 148 4 0 chr9 6777320 6777598 -111085029 - AluSx SINE Alu -33 279 1 446 266 80 88 chr9 6777644 6777870 -111084757 + L1MC/D LINE L1 5255 5478 -2330 645 209 16 0 chr9 6777888 6778017 -111084610 + FLAM_A SINE Alu 1 131 -2 2195 113 0 0 chr9 6778019 6778320 -111084307 + AluSx SINE Alu 1 301 -11 1514 188 7 36 chr9 6778410 6778714 -111083913 + AluJo SINE Alu 1 295 -17 27 0 0 0 chr9 6778716 6778743 -111083884 + AT_rich Low_complexity Low_complexity 1 27 0 2074 116 3 22 chr9 6780121 6780440 -111082187 + AluSp SINE Alu 1 313 0 1552 180 10 35 chr9 6780774 6781085 -111081542 + AluJo SINE Alu 1 303 -9 1691 169 23 10 chr9 6781085 6781392 -111081235 + AluSx SINE Alu 1 312 0 2129 117 0 0 chr9 6781582 6781881 -111080746 + AluSg SINE Alu 1 299 -11 1514 182 0 21 chr9 6782329 6782620 -111080007 - AluJb SINE Alu -27 285 1 216 97 0 0 chr9 6782709 6782740 -111079887 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1989 80 88 0 chr9 6783067 6783341 -111079286 - AluSx SINE Alu -13 299 2 235 244 178 39 chr9 6783537 6783635 -111078992 - MER2 DNA MER2_type -16 329 246 2174 118 0 0 chr9 6783635 6783941 -111078686 + AluSx SINE Alu 1 306 -6 235 244 178 39 chr9 6783941 6784022 -111078605 - MER2 DNA MER2_type -99 246 125 324 172 30 49 chr9 6784024 6784261 -111078366 + AluJb SINE Alu 2 301 0 2101 120 3 0 chr9 6784408 6784717 -111077910 - AluSg SINE Alu 0 310 1 201 74 0 0 chr9 6784718 6784745 -111077882 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 298 170 0 0 chr9 6785602 6785649 -111076978 - L2 LINE L2 0 3313 3267 2246 77 0 10 chr9 6786715 6787028 -111075599 + AluY SINE Alu 1 310 -1 1958 87 37 24 chr9 6787480 6787778 -111074849 + AluSq SINE Alu 1 302 -11 1923 114 4 0 chr9 6787990 6788310 -111074317 + AluSx SINE Alu 1 321 0 907 158 0 74 chr9 6788314 6788516 -111074111 - AluJb SINE Alu -2 310 124 1710 168 21 0 chr9 6788530 6788816 -111073811 + AluJb SINE Alu 1 292 -20 2274 72 0 28 chr9 6788821 6789141 -111073486 + AluY SINE Alu 1 311 0 2177 59 0 21 chr9 6789148 6789487 -111073140 + AluY SINE Alu 1 333 0 331 224 0 0 chr9 6789900 6789967 -111072660 + L1ME LINE L1 5619 5685 -436 2190 99 0 13 chr9 6790239 6790553 -111072074 + AluSg SINE Alu 1 310 0 2109 92 0 0 chr9 6790823 6791104 -111071523 + AluSx SINE Alu 1 281 -31 1611 171 3 13 chr9 6792272 6792571 -111070056 + AluSx SINE Alu 10 305 -7 2276 85 0 0 chr9 6792899 6793193 -111069434 - AluSg SINE Alu -16 294 1 372 22 0 0 chr9 6793524 6793569 -111069058 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr9 6793617 6793641 -111068986 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 10861 28 20 31 chr9 6793646 6795009 -111067618 + SVA Other Other 38 1385 -1 1856 199 97 21 chr9 6795571 6796002 -111066625 + MLT1C LTR MaLR 1 464 -3 2129 99 0 3 chr9 6796086 6796379 -111066248 + AluSx SINE Alu 5 296 -16 2428 60 0 3 chr9 6798390 6798691 -111063936 + AluY SINE Alu 1 300 -11 747 114 21 6 chr9 6799884 6800129 -111062498 + AluJ SINE Alu 1 294 -18 1927 75 20 0 chr9 6800598 6800852 -111061775 - AluSq SINE Alu -16 297 39 25 0 0 0 chr9 6801178 6801203 -111061424 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr9 6801304 6801327 -111061300 + (TA)n Simple_repeat Simple_repeat 2 24 0 908 132 0 22 chr9 6801329 6801465 -111061162 - FLAM_C SINE Alu 0 133 1 969 91 0 0 chr9 6801535 6801667 -111060960 + AluY SINE Alu 173 304 -7 1442 156 31 28 chr9 6803160 6803449 -111059178 + AluJo SINE Alu 1 290 -22 187 355 106 23 chr9 6804667 6804932 -111057695 + L2 LINE L2 2140 2426 -888 271 261 0 0 chr9 6804950 6805015 -111057612 + LTR16B LTR ERVL 54 118 -346 435 193 45 0 chr9 6805017 6805105 -111057522 + AluS SINE Alu 2 93 -219 631 167 135 26 chr9 6805109 6805265 -111057362 + L1ME3A LINE L1 5693 5865 -305 2113 104 0 3 chr9 6805711 6806009 -111056618 - AluSx SINE Alu -15 297 1 525 220 135 21 chr9 6806009 6806150 -111056477 - FRAM SINE Alu -13 163 7 1973 259 96 31 chr9 6806166 6806434 -111056193 + L2 LINE L2 2005 2254 -1060 2045 129 0 0 chr9 6806434 6806745 -111055882 - AluY SINE Alu 0 311 1 1973 259 96 31 chr9 6806745 6807239 -111055388 + L2 LINE L2 2254 2816 -498 597 244 65 57 chr9 6807244 6807474 -111055153 - LTR33 LTR ERVL -2 519 288 1350 197 4 4 chr9 6807693 6807972 -111054655 - AluJo SINE Alu -33 279 1 2097 101 13 7 chr9 6808530 6808836 -111053791 + AluSx SINE Alu 5 312 0 1693 95 91 18 chr9 6810024 6810298 -111052329 - AluSc SINE Alu -14 295 2 1205 135 5 25 chr9 6811011 6811211 -111051416 + AluSx SINE Alu 1 196 -116 1465 199 13 10 chr9 6811424 6811763 -111050864 + AluSx SINE Alu 1 340 0 22 35 0 0 chr9 6813119 6813148 -111049479 + GC_rich Low_complexity Low_complexity 1 29 0 389 92 70 21 chr9 6813473 6813615 -111049012 + (TATAA)n Simple_repeat Simple_repeat 1 149 0 1689 146 4 7 chr9 6814143 6814423 -111048204 + AluJb SINE Alu 5 283 -29 43 0 0 0 chr9 6814455 6814498 -111048129 + AT_rich Low_complexity Low_complexity 1 43 0 * 300 224 83 68 chr9 6814482 6814674 -111047953 + L1MC5 LINE L1 7571 7765 -196 1861 106 71 3 chr9 6815180 6815463 -111047164 + AluSx SINE Alu 1 302 -10 2201 95 3 7 chr9 6815801 6816105 -111046522 + AluSc SINE Alu 1 303 -6 2091 137 0 3 chr9 6816540 6816853 -111045774 - AluSx SINE Alu 0 312 1 304 280 72 32 chr9 6816929 6816973 -111045654 - MIR SINE MIR -62 146 105 1236 172 4 70 chr9 6816973 6817229 -111045398 + MER8 DNA MER2_type 1 239 0 2266 94 0 3 chr9 6817230 6817539 -111045088 + AluSq SINE Alu 1 308 -5 304 280 72 32 chr9 6817539 6817617 -111045010 - MIR SINE MIR -102 106 17 647 131 46 39 chr9 6817655 6817785 -111044842 + FLAM_A SINE Alu 1 131 -2 222 209 47 0 chr9 6817797 6817840 -111044787 + MIR SINE MIR 67 111 -151 411 303 73 12 chr9 6817843 6818008 -111044619 + MIR SINE MIR 85 259 -3 2004 96 0 36 chr9 6818479 6818782 -111043845 + AluSx SINE Alu 1 292 -20 2013 113 17 3 chr9 6818804 6819104 -111043523 + AluSx SINE Alu 1 304 -8 2199 88 3 7 chr9 6820483 6820789 -111041838 + AluSp SINE Alu 1 305 -8 216 200 0 0 chr9 6820806 6820851 -111041776 + GA-rich Low_complexity Low_complexity 4 48 0 696 144 0 24 chr9 6820857 6820982 -111041645 + FLAM_C SINE Alu 5 126 -7 3819 150 49 71 chr9 6821023 6821725 -111040902 + LTR39 LTR ERV1 1 717 -66 1730 153 14 0 chr9 6821725 6822012 -111040615 + AluJb SINE Alu 1 291 -21 3819 150 49 71 chr9 6822012 6822032 -111040595 + LTR39 LTR ERV1 717 736 -47 2028 127 0 0 chr9 6822032 6822331 -111040296 + AluSx SINE Alu 4 302 -10 3819 150 49 71 chr9 6822331 6822408 -111040219 + LTR39 LTR ERV1 736 783 0 2298 85 7 0 chr9 6822965 6823272 -111039355 - AluSq SINE Alu -4 309 1 2290 76 3 7 chr9 6823448 6823751 -111038876 - AluSx SINE Alu -10 302 1 1937 114 3 50 chr9 6823771 6824088 -111038539 - AluSp SINE Alu -11 302 1 1349 181 12 116 chr9 6824470 6824668 -111037959 - AluJo SINE Alu 0 302 85 1928 141 0 26 chr9 6824668 6824980 -111037647 - AluSx SINE Alu -8 304 1 2228 83 0 3 chr9 6824983 6825284 -111037343 - AluSg SINE Alu -10 300 1 1349 181 12 116 chr9 6825284 6825418 -111037209 - AluJo SINE Alu -219 83 1 1513 169 0 77 chr9 6825792 6825914 -111036713 + AluJb SINE Alu 1 131 -181 2281 85 3 0 chr9 6825914 6826209 -111036418 - AluSp SINE Alu -17 296 1 1513 169 0 77 chr9 6826209 6826424 -111036203 + AluJb SINE Alu 131 312 0 1913 100 0 4 chr9 6826522 6826792 -111035835 + AluSq SINE Alu 35 303 -10 372 331 47 0 chr9 6826804 6826931 -111035696 + HERVL68 LTR ERVL 1084 1216 -4314 390 56 14 111 chr9 6826975 6827047 -111035580 + Alu SINE Alu 236 300 0 485 226 49 0 chr9 6827113 6827215 -111035412 + HERVL68 LTR ERVL 3510 3616 -1914 269 119 24 0 chr9 6827209 6827251 -111035376 + HERVL68 LTR ERVL 3765 3807 -1723 * 586 341 70 24 chr9 6827526 6827895 -111034732 + HERVL68 LTR ERVL 2490 2875 -2655 2091 92 0 3 chr9 6827911 6828225 -111034402 - AluSc SINE Alu 0 313 1 1409 177 106 40 chr9 6828231 6828553 -111034074 - MLT1D LTR MaLR 0 505 163 1360 115 0 14 chr9 6828876 6829084 -111033543 - AluSq SINE Alu -5 308 104 1334 127 0 14 chr9 6829094 6829306 -111033321 - AluSg/x SINE Alu 0 312 104 2043 123 16 7 chr9 6829311 6829620 -111033007 - AluSx SINE Alu 0 312 1 292 163 0 0 chr9 6829635 6829678 -111032949 - MER57A LTR ERV1 -66 337 295 1989 125 3 0 chr9 6830143 6830431 -111032196 - AluSx SINE Alu -23 289 1 2126 121 0 0 chr9 6830565 6830872 -111031755 + AluSq SINE Alu 1 307 -6 1002 54 15 0 chr9 6830872 6831002 -111031625 + AluY SINE Alu 1 132 -179 225 0 0 0 chr9 6831463 6831488 -111031139 + (A)n Simple_repeat Simple_repeat 1 25 0 678 200 13 13 chr9 6831488 6831638 -111030989 + HERVL68 LTR ERVL 770 919 -2118 1963 134 13 0 chr9 6831650 6831949 -111030678 + AluSg SINE Alu 1 303 -7 2174 101 0 3 chr9 6831961 6832268 -111030359 + AluSg SINE Alu 1 306 -4 2330 87 0 3 chr9 6832320 6832630 -111029997 + AluSg1 SINE Alu 1 309 0 1594 159 17 23 chr9 6832655 6832957 -111029670 + AluJb SINE Alu 1 300 -12 1950 173 36 48 chr9 6832957 6833224 -111029403 + HERVL68 LTR ERVL 929 1191 -1846 2028 133 0 0 chr9 6833224 6833526 -111029101 + AluSx SINE Alu 1 302 -10 1950 173 36 48 chr9 6833526 6833679 -111028948 + HERVL68 LTR ERVL 1191 1344 -1693 2478 121 24 66 chr9 6833679 6833730 -111028897 - MER57B LTR ERV1 0 434 382 2378 64 0 0 chr9 6833730 6834025 -111028602 + AluY SINE Alu 1 295 -16 2478 121 24 66 chr9 6834025 6834426 -111028201 - MER57B LTR ERV1 -52 382 1 1585 81 124 4 chr9 6834430 6834664 -111027963 - MER57B-int LTR ERV1 -4 7533 7272 612 118 30 104 chr9 6834664 6834710 -111027917 - LTR54B LTR ERV1 -371 127 79 2383 63 9 25 chr9 6834710 6835028 -111027599 - AluSp SINE Alu 0 313 1 612 118 30 104 chr9 6835028 6835116 -111027511 - LTR54B LTR ERV1 -419 79 3 2832 89 0 0 chr9 6835116 6835477 -111027150 - MER57B-int LTR ERV1 -389 7148 6788 2374 74 7 0 chr9 6835482 6835791 -111026836 + AluY SINE Alu 1 311 0 586 94 0 62 chr9 6835805 6835901 -111026726 + AluS SINE Alu 2 91 -222 321 93 0 0 chr9 6835901 6835944 -111026683 - Alu SINE Alu -265 43 1 939 111 24 83 chr9 6835944 6836127 -111026500 - MER57-int LTR ERV1 -4402 1451 1259 2134 120 0 0 chr9 6836127 6836428 -111026199 + AluSx SINE Alu 1 301 -11 939 111 24 83 chr9 6836428 6836548 -111026079 - MER57-int LTR ERV1 -4594 1259 632 2726 181 48 25 chr9 6836572 6836998 -111025629 + HERVL68 LTR ERVL 1377 1821 -1216 4256 77 9 0 chr9 6836998 6837547 -111025080 - MER41A LTR ERV1 0 554 1 2726 181 48 25 chr9 6837547 6837684 -111024943 + HERVL68 LTR ERVL 1821 1953 -1084 2300 85 3 0 chr9 6837685 6837990 -111024637 - AluSp SINE Alu -7 306 1 737 239 117 9 chr9 6838565 6838787 -111023840 + REP3 LTR ERV 290 535 -27 2173 132 30 28 chr9 6838792 6839155 -111023472 + THE1B LTR MaLR 1 364 0 6538 96 3 0 chr9 6839156 6840020 -111022607 + THE1B-int LTR MaLR 2 868 -712 633 228 7 0 chr9 6840024 6840160 -111022467 + L1P LINE L1 4187 4323 -1823 1790 141 3 3 chr9 6840167 6840471 -111022156 + AluSx SINE Alu 3 306 -6 273 162 4 70 chr9 6840482 6840547 -111022080 + AluJo SINE Alu 83 134 -168 1448 88 39 61 chr9 6840566 6840775 -111021852 + L1P4 LINE L1 5128 5331 -834 2168 117 0 10 chr9 6840775 6841083 -111021544 + AluSq SINE Alu 1 305 -8 1448 88 39 61 chr9 6841083 6841251 -111021376 + L1P4 LINE L1 5331 5501 -664 1836 125 18 4 chr9 6841251 6841532 -111021095 + AluSq SINE Alu 1 285 -28 432 0 0 0 chr9 6841532 6841580 -111021047 + (CTAAA)n Simple_repeat Simple_repeat 3 50 0 1851 106 8 0 chr9 6841591 6841855 -111020772 + AluSx SINE Alu 1 266 -46 1289 128 0 137 chr9 6841858 6842015 -111020612 - AluJb SINE Alu -40 272 178 1306 120 147 71 chr9 6842015 6842281 -111020346 - AluSx SINE Alu -26 286 1 1289 128 0 137 chr9 6842281 6842436 -111020191 - AluJb SINE Alu -134 178 3 1928 133 0 0 chr9 6842483 6842769 -111019858 - AluSx SINE Alu -26 286 1 659 156 57 8 chr9 6843122 6843244 -111019383 + FLAM_C SINE Alu 12 139 -4 2127 116 0 6 chr9 6843275 6843586 -111019041 - AluSc SINE Alu 0 309 1 2266 70 0 0 chr9 6843591 6843899 -111018728 - AluY SINE Alu 0 308 1 2064 126 0 0 chr9 6843914 6844215 -111018412 - AluSx SINE Alu -11 301 1 1644 132 12 0 chr9 6844228 6844470 -111018157 - AluSg SINE Alu -16 294 50 699 221 49 71 chr9 6844470 6844512 -111018115 - L1MDa LINE L1 -4380 2160 2119 2021 118 3 3 chr9 6844512 6844816 -111017811 + AluSc SINE Alu 1 304 -5 699 221 49 71 chr9 6844816 6845081 -111017546 - L1MDa LINE L1 -4421 2119 1860 728 154 0 70 chr9 6845121 6845264 -111017363 - FLAM_C SINE Alu 0 133 1 1607 109 0 0 chr9 6845359 6845588 -111017039 - AluSg/x SINE Alu -2 308 80 725 95 0 0 chr9 6845588 6845683 -111016944 - AluSg SINE Alu -188 122 28 232 259 120 0 chr9 6845698 6845806 -111016821 - L1MDa LINE L1 -4782 1758 1638 245 195 0 0 chr9 6845817 6845858 -111016769 - MER57A LTR ERV1 -67 336 296 503 214 44 87 chr9 6845858 6846064 -111016563 - L1MDa LINE L1 -4873 1667 1471 328 177 0 0 chr9 6846078 6846140 -111016487 - AluS SINE Alu -8 293 232 827 129 0 0 chr9 6846299 6846423 -111016204 + AluSg/x SINE Alu 173 296 -14 187 398 21 0 chr9 6846696 6846789 -111015838 + L2 LINE L2 3178 3272 0 1867 147 7 3 chr9 6846896 6847203 -111015424 - AluSx SINE Alu -4 308 1 858 168 0 0 chr9 6847313 6847444 -111015183 - FLAM_C SINE Alu -2 131 1 2210 103 0 3 chr9 6847641 6847941 -111014686 + AluSc SINE Alu 2 300 -9 681 197 15 29 chr9 6847953 6848090 -111014537 - AluJo SINE Alu -176 136 2 216 111 0 0 chr9 6848361 6848397 -111014230 + (TCC)n Simple_repeat Simple_repeat 3 38 0 1484 171 75 0 chr9 6848713 6848994 -111013633 + AluJo SINE Alu 1 302 0 188 135 27 0 chr9 6848999 6849036 -111013591 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 1950 113 13 17 chr9 6849036 6849199 -111013428 - AluSx SINE Alu -13 299 136 2145 106 13 0 chr9 6849199 6849501 -111013126 - AluSp SINE Alu -6 307 2 1950 113 13 17 chr9 6849501 6849637 -111012990 - AluSx SINE Alu -176 136 1 2476 39 3 7 chr9 6849659 6849965 -111012662 - AluY SINE Alu -6 305 1 1584 186 0 24 chr9 6849994 6850123 -111012504 + AluJb SINE Alu 1 132 -180 2513 36 13 0 chr9 6850123 6850430 -111012197 + AluY SINE Alu 1 311 0 1584 186 0 24 chr9 6850430 6850596 -111012031 + AluJb SINE Alu 132 289 -23 234 0 0 0 chr9 6850599 6850625 -111012002 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 574 248 101 50 chr9 6850628 6850662 -111011965 - Charlie1 DNA MER1_type -2517 244 213 2162 81 27 3 chr9 6850662 6850959 -111011668 + AluY SINE Alu 1 304 -7 574 248 101 50 chr9 6850959 6851122 -111011505 - Charlie1 DNA MER1_type -2548 213 37 1707 146 41 7 chr9 6851292 6851614 -111011013 + AluSx SINE Alu 1 312 0 2357 74 3 0 chr9 6851622 6851921 -111010706 + AluSp SINE Alu 1 300 -13 183 42 0 0 chr9 6851924 6851948 -111010679 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2041 123 3 0 chr9 6852422 6852715 -111009912 - AluSp SINE Alu -19 294 1 1330 150 0 26 chr9 6852866 6853093 -111009534 + AluJo SINE Alu 91 311 -1 2198 107 3 0 chr9 6853101 6853410 -111009217 + AluSq SINE Alu 1 310 -3 2130 122 0 0 chr9 6853555 6853850 -111008777 + AluSg SINE Alu 1 295 -15 918 251 67 110 chr9 6854151 6854560 -111008067 - MLT1H LTR MaLR -11 538 154 1812 147 0 0 chr9 6854560 6854846 -111007781 + AluJb SINE Alu 1 286 -26 918 251 67 110 chr9 6854846 6854945 -111007682 - MLT1H LTR MaLR -395 154 52 1334 14 0 0 chr9 6855448 6855596 -111007031 + AluY SINE Alu 1 148 -163 252 0 0 0 chr9 6855699 6855727 -111006900 + (A)n Simple_repeat Simple_repeat 1 28 0 1954 121 28 0 chr9 6855779 6856068 -111006559 - AluSq SINE Alu -16 297 1 865 195 51 96 chr9 6856748 6856803 -111005824 - MSTD LTR MaLR 0 396 340 862 133 0 22 chr9 6856803 6856938 -111005689 - FLAM_C SINE Alu 0 133 2 865 195 51 96 chr9 6856938 6857155 -111005472 - MSTD LTR MaLR -56 340 87 2362 77 0 7 chr9 6857231 6857541 -111005086 - AluY SINE Alu -3 308 1 2110 132 0 0 chr9 6857567 6857878 -111004749 - AluSq SINE Alu -2 311 1 1820 145 7 7 chr9 6857959 6858269 -111004358 + AluJb SINE Alu 1 310 -2 1672 147 6 58 chr9 6858321 6858455 -111004172 + AluSx SINE Alu 1 140 -172 2165 102 0 0 chr9 6858455 6858749 -111003878 + AluY SINE Alu 1 294 -17 1672 147 6 58 chr9 6858749 6858941 -111003686 + AluSx SINE Alu 140 310 -2 591 236 52 17 chr9 6859504 6859678 -111002949 + MIR SINE MIR 77 256 -6 2216 73 0 0 chr9 6859800 6860088 -111002539 + AluSx SINE Alu 1 288 -24 1740 122 44 0 chr9 6863036 6863361 -110999266 + AluSx SINE Alu 1 337 0 2137 158 47 27 chr9 6863362 6863811 -110998816 - L1MB8 LINE L1 -72 6106 5649 180 0 0 0 chr9 6863811 6863831 -110998796 + (TA)n Simple_repeat Simple_repeat 1 20 0 2237 73 0 7 chr9 6863908 6864237 -110998390 - AluY SINE Alu 0 327 1 2139 95 13 36 chr9 6864368 6864674 -110997953 - AluSx SINE Alu -13 299 1 1292 209 60 11 chr9 6864702 6864985 -110997642 - AluJo SINE Alu -15 297 1 2107 73 52 11 chr9 6865177 6865463 -110997164 - AluSg SINE Alu -12 298 1 1749 64 0 0 chr9 6865464 6865683 -110996944 - L1PA6 LINE L1 0 6154 5936 768 171 39 0 chr9 6865707 6865836 -110996791 - AluJo SINE Alu -177 135 2 205 195 52 0 chr9 6865941 6866018 -110996609 + (TTATA)n Simple_repeat Simple_repeat 3 83 0 2271 104 3 7 chr9 6866028 6866325 -110996302 - AluSq SINE Alu -17 296 1 242 234 36 72 chr9 6866649 6866760 -110995867 + L2 LINE L2 2934 3040 -232 393 233 70 39 chr9 6866893 6867022 -110995605 + L1ME4a LINE L1 5987 6119 -2 2273 91 3 7 chr9 6867127 6867424 -110995203 - AluSp SINE Alu -17 296 1 268 200 67 40 chr9 6867863 6867938 -110994689 - L2 LINE L2 -33 3280 3204 285 274 89 66 chr9 6868700 6869003 -110993624 + L2 LINE L2 3002 3311 -2 399 161 23 23 chr9 6869038 6869125 -110993502 + MER112 DNA MER1_type 23 109 -151 2141 121 0 16 chr9 6869148 6869453 -110993174 - AluSx SINE Alu -11 301 2 23 33 0 0 chr9 6869457 6869487 -110993140 + AT_rich Low_complexity Low_complexity 1 30 0 657 150 154 91 chr9 6869491 6869711 -110992916 - MER46A DNA MER2_type -1 235 2 2362 86 0 10 chr9 6870492 6870806 -110991821 - AluY SINE Alu 0 311 1 1849 121 6 82 chr9 6870809 6871124 -110991503 - AluSx SINE Alu -21 291 1 22 35 0 0 chr9 6871265 6871294 -110991333 + AT_rich Low_complexity Low_complexity 1 29 0 732 221 117 29 chr9 6871811 6872051 -110990576 - L1MC4 LINE L1 -180 7862 7602 2407 100 3 0 chr9 6872129 6872438 -110990189 - AluSq SINE Alu -3 310 1 198 167 0 0 chr9 6872695 6872731 -110989896 + T-rich Low_complexity Low_complexity 2 37 0 317 259 14 61 chr9 6872813 6872960 -110989667 + MIR SINE MIR 71 210 -52 2101 136 7 0 chr9 6873265 6873575 -110989052 + AluSq SINE Alu 2 313 0 2483 88 0 0 chr9 6874133 6874439 -110988188 - AluSg SINE Alu -4 306 1 913 125 0 22 chr9 6874460 6874596 -110988031 - FLAM_C SINE Alu 0 133 1 2174 115 3 7 chr9 6874672 6874976 -110987651 - AluSx SINE Alu -9 303 1 1751 74 5 0 chr9 6875517 6875732 -110986895 - AluSg/x SINE Alu -14 296 81 2335 89 3 0 chr9 6875733 6876025 -110986602 - AluSp SINE Alu -19 294 2 2259 107 0 16 chr9 6876044 6876361 -110986266 - AluSx SINE Alu 0 312 1 1807 150 7 20 chr9 6876361 6876660 -110985967 - AluJo SINE Alu -5 307 12 2197 128 3 0 chr9 6876855 6877152 -110985475 + AluSx SINE Alu 1 298 -14 226 48 0 48 chr9 6877270 6877312 -110985315 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1777 118 0 0 chr9 6877324 6877553 -110985074 - AluSx SINE Alu -83 229 1 1934 145 32 0 chr9 6877749 6878031 -110984596 + AluSx SINE Alu 2 292 -20 624 252 30 70 chr9 6878347 6878378 -110984249 - L1ME3A LINE L1 -294 5872 5841 2033 139 0 20 chr9 6878378 6878680 -110983947 - AluSx SINE Alu -14 298 3 624 252 30 70 chr9 6878680 6878878 -110983749 - L1ME3A LINE L1 -325 5841 5652 2255 93 7 0 chr9 6878896 6879185 -110983442 - AluSq SINE Alu -21 292 2 661 212 179 5 chr9 6879192 6879376 -110983251 - MER20 DNA MER1_type -3 216 1 770 199 0 57 chr9 6879448 6879624 -110983003 - FRAM SINE Alu -11 165 1 1891 96 88 7 chr9 6879633 6879905 -110982722 - AluSc SINE Alu -15 294 1 2101 99 20 10 chr9 6879964 6880267 -110982360 - AluSq SINE Alu -7 306 1 588 98 0 0 chr9 6881005 6881087 -110981540 - AluSg/x SINE Alu -20 292 211 965 142 24 41 chr9 6881282 6881451 -110981176 - AluJo/FRAM SINE Alu -13 299 134 2275 110 0 0 chr9 6881451 6881750 -110980877 - AluSx SINE Alu -8 304 6 2149 109 0 3 chr9 6881850 6882134 -110980493 + AluSx SINE Alu 1 283 -29 299 69 52 52 chr9 6882182 6882240 -110980387 - Alu SINE Alu 0 301 244 1072 111 0 7 chr9 6882244 6882388 -110980239 - AluSq/x SINE Alu -170 143 1 2312 64 42 0 chr9 6882399 6882682 -110979945 - AluY SINE Alu -16 295 1 226 242 91 0 chr9 6883061 6883127 -110979500 + LTR67 LTR ERVL 485 556 -1 2061 136 3 7 chr9 6883851 6884161 -110978466 + AluSq SINE Alu 1 309 -4 3199 186 18 46 chr9 6884584 6885187 -110977440 + MER82 DNA MER2_type 2 586 -67 2116 106 7 16 chr9 6885187 6885490 -110977137 - AluSq SINE Alu -13 300 1 3199 186 18 46 chr9 6885490 6885554 -110977073 + MER82 DNA MER2_type 586 650 -3 367 256 147 24 chr9 6885705 6885916 -110976711 + MIR SINE MIR 6 242 -20 206 369 39 8 chr9 6887089 6887219 -110975408 - L2 LINE L2 -1339 1975 1842 503 235 59 48 chr9 6887464 6887651 -110974976 - MIR SINE MIR -26 236 48 1327 138 0 15 chr9 6887703 6887898 -110974729 - AluSx SINE Alu -120 192 1 1953 202 23 32 chr9 6888417 6888708 -110973919 - MLT1C LTR MaLR 0 467 180 2309 92 0 7 chr9 6888708 6889003 -110973624 - AluSg SINE Alu -17 293 1 1953 202 23 32 chr9 6889003 6889182 -110973445 - MLT1C LTR MaLR -287 180 1 260 263 140 22 chr9 6890151 6890289 -110972338 + L1ME LINE L1 5320 5474 -647 2135 122 0 3 chr9 6890596 6890900 -110971727 - AluSx SINE Alu -9 303 1 549 261 142 89 chr9 6890905 6891593 -110971034 + L2 LINE L2 2422 3145 -168 1790 127 3 71 chr9 6892407 6892585 -110970042 - AluJb SINE Alu -9 303 155 2444 83 3 0 chr9 6892585 6892886 -110969741 - AluSp SINE Alu -11 302 1 1790 127 3 71 chr9 6892886 6893030 -110969597 - AluJb SINE Alu -157 155 3 1105 147 0 6 chr9 6893433 6893603 -110969024 + AluJb SINE Alu 3 171 -141 1811 88 88 47 chr9 6893769 6894066 -110968561 - AluY SINE Alu -2 309 1 261 83 0 0 chr9 6894168 6894204 -110968423 + (A)n Simple_repeat Simple_repeat 1 36 0 250 174 0 0 chr9 6894333 6894379 -110968248 + L2 LINE L2 3264 3309 -4 191 351 80 48 chr9 6894463 6894651 -110967976 + L2 LINE L2 2888 3081 -191 1768 149 26 4 chr9 6894651 6894919 -110967708 - AluSx SINE Alu -38 274 1 2175 128 3 0 chr9 6895254 6895560 -110967067 + AluSp SINE Alu 1 307 -6 2072 107 7 10 chr9 6895573 6895864 -110966763 + AluSx SINE Alu 3 292 -20 194 0 39 0 chr9 6895865 6895891 -110966736 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 278 139 0 0 chr9 6896033 6896076 -110966551 - AluSg SINE Alu -6 296 254 2136 112 0 0 chr9 6896076 6896352 -110966275 - AluSg SINE Alu -34 276 1 2419 85 0 9 chr9 6897192 6897508 -110965119 - AluSq SINE Alu 0 313 1 979 178 15 54 chr9 6897513 6897772 -110964855 - L1MB7 LINE L1 0 6184 5936 527 194 32 48 chr9 6897785 6897909 -110964718 - L2 LINE L2 -2 3311 3190 244 363 104 0 chr9 6897936 6898071 -110964556 - L2 LINE L2 -284 3029 2881 283 286 109 51 chr9 6898194 6898369 -110964258 - L2 LINE L2 -607 2707 2523 2206 122 0 3 chr9 6898992 6899295 -110963332 - AluSx SINE Alu -8 304 3 1900 174 0 0 chr9 6899333 6899637 -110962990 - AluJb SINE Alu -8 304 1 1632 95 14 0 chr9 6899829 6900051 -110962576 + AluSq SINE Alu 1 225 -88 1519 119 78 71 chr9 6900657 6900952 -110961675 - AluJb SINE Alu -15 297 1 10869 55 29 16 chr9 6901918 6903283 -110959344 - SVA Other Other -2 1384 2 228 67 0 0 chr9 6903296 6903326 -110959301 + (T)n Simple_repeat Simple_repeat 1 30 0 1703 157 13 43 chr9 6903606 6903751 -110958876 + AluJo SINE Alu 1 134 -178 2101 138 10 0 chr9 6903751 6904055 -110958572 + AluSx SINE Alu 1 307 -5 1703 157 13 43 chr9 6904055 6904209 -110958418 + AluJo SINE Alu 134 291 -21 1979 137 0 16 chr9 6904276 6904591 -110958036 - AluJb SINE Alu 0 312 3 210 257 57 0 chr9 6904718 6904788 -110957839 + MIR SINE MIR 62 135 -127 260 231 51 0 chr9 6904826 6904904 -110957723 + L1ME3A LINE L1 5003 5084 -1062 2242 64 68 14 chr9 6904907 6905202 -110957425 - AluY SINE Alu 0 311 1 345 24 0 0 chr9 6905284 6905326 -110957301 + (TC)n Simple_repeat Simple_repeat 2 43 0 1663 255 31 103 chr9 6905382 6905488 -110957139 + L1ME3A LINE L1 5263 5375 -795 2324 91 3 3 chr9 6905488 6905786 -110956841 + AluSq SINE Alu 1 298 -15 1663 255 31 103 chr9 6905786 6906282 -110956345 + L1ME3A LINE L1 5375 5770 -400 1735 145 80 0 chr9 6906282 6906572 -110956055 - AluSx SINE Alu 0 311 1 1663 255 31 103 chr9 6906572 6906946 -110955681 + L1ME3A LINE L1 5770 6170 0 2141 94 3 41 chr9 6906956 6907276 -110955351 + AluSc SINE Alu 1 308 -1 790 163 31 0 chr9 6907295 6907424 -110955203 + FLAM_C SINE Alu 1 133 0 1846 156 28 3 chr9 6907500 6907788 -110954839 - AluSx SINE Alu -17 295 1 814 284 10 0 chr9 6907890 6908098 -110954529 - MER63A DNA MER1_type 0 210 1 2260 98 3 3 chr9 6908143 6908440 -110954187 + AluSg SINE Alu 1 297 -13 2283 98 0 0 chr9 6908568 6908864 -110953763 - AluSg SINE Alu -14 296 1 306 262 219 16 chr9 6908906 6909089 -110953538 + MIR SINE MIR 34 253 -9 1868 180 158 68 chr9 6909836 6909878 -110952749 - MLT1F1 LTR MaLR 0 567 530 2268 101 3 0 chr9 6909878 6910202 -110952425 + AluSp SINE Alu 1 325 0 1868 180 158 68 chr9 6910202 6910525 -110952102 - MLT1F1 LTR MaLR -37 530 237 504 45 0 0 chr9 6910525 6910592 -110952035 + (TCTCCC)n Simple_repeat Simple_repeat 1 67 0 8756 24 9 264 chr9 6910592 6912376 -110950251 + SVA Other Other 57 1386 0 1868 180 158 68 chr9 6912376 6912518 -110950109 - MLT1F1 LTR MaLR -329 238 11 1789 166 31 0 chr9 6913382 6913672 -110948955 + AluJb SINE Alu 1 299 -13 228 299 130 0 chr9 6913960 6914037 -110948590 + L2 LINE L2 3186 3272 0 1810 153 7 7 chr9 6914256 6914565 -110948062 + AluJb SINE Alu 2 310 0 2012 83 8 8 chr9 6914826 6915090 -110947537 - AluSg SINE Alu -19 291 28 462 349 79 4 chr9 6915281 6915510 -110947117 - MIR SINE MIR -15 247 2 1111 90 28 0 chr9 6915769 6915914 -110946713 + AluSg/x SINE Alu 150 298 -14 2117 126 77 0 chr9 6916071 6916381 -110946246 - MER1B DNA MER1_type 0 337 4 2196 89 13 16 chr9 6916559 6916873 -110945754 + AluSp SINE Alu 1 313 0 551 186 93 62 chr9 6916873 6916994 -110945633 - FLAM_C SINE Alu -174 128 1 286 286 70 29 chr9 6917626 6917797 -110944830 - L1ME LINE L1 -406 5715 5538 25 0 0 0 chr9 6918851 6918876 -110943751 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr9 6919016 6919059 -110943568 + AT_rich Low_complexity Low_complexity 1 43 0 747 170 0 0 chr9 6919067 6919179 -110943448 - FLAM_C SINE Alu -30 113 2 341 281 38 72 chr9 6919185 6919270 -110943357 - L1MC4 LINE L1 -1 8041 7955 932 165 83 61 chr9 6919270 6919500 -110943127 + MER46A DNA MER2_type 1 235 -1 341 281 38 72 chr9 6919500 6919649 -110942978 - L1MC4 LINE L1 -87 7955 7815 255 119 203 0 chr9 6919654 6919713 -110942914 - L1MC4 LINE L1 -273 7769 7699 333 228 22 73 chr9 6919755 6919891 -110942736 - L1MC4 LINE L1 -725 7317 7189 734 200 35 102 chr9 6919896 6920227 -110942400 - L1ME3A LINE L1 -1 6169 5865 570 210 158 9 chr9 6920255 6920496 -110942131 - L1ME3A LINE L1 -556 5606 5328 247 276 105 6 chr9 6920670 6920851 -110941776 + L1MC5 LINE L1 7628 7826 -135 1864 155 7 10 chr9 6920874 6921170 -110941457 - AluJo SINE Alu -17 295 1 367 284 22 33 chr9 6921324 6921429 -110941198 - L1ME4a LINE L1 -9 6112 6008 2253 110 0 0 chr9 6921429 6921730 -110940897 - AluSg SINE Alu -9 301 1 367 284 22 33 chr9 6921730 6921807 -110940820 - L1ME4a LINE L1 -113 6008 5932 210 227 29 39 chr9 6922368 6922465 -110940162 - MIR SINE MIR -67 141 70 201 221 126 63 chr9 6923864 6923959 -110938668 - L2 LINE L2 -208 3064 2964 7439 51 2 0 chr9 6924388 6925287 -110937340 - L1PA6 LINE L1 0 6154 5254 1849 134 42 0 chr9 6925316 6925600 -110937027 - AluSx SINE Alu -16 296 1 580 256 94 6 chr9 6925802 6925982 -110936645 + MER58A DNA MER1_type 28 223 -1 1353 155 52 174 chr9 6928150 6928527 -110934100 - Charlie1b DNA MER1_type -2238 523 238 2241 111 0 7 chr9 6928527 6928834 -110933793 + AluSq SINE Alu 1 305 -8 1353 155 52 174 chr9 6928834 6929046 -110933581 - Charlie1b DNA MER1_type -2523 238 2 1791 186 0 3 chr9 6929465 6929777 -110932850 - AluJb SINE Alu -1 311 1 399 307 108 25 chr9 6929991 6930232 -110932395 - L1ME4a LINE L1 -43 6078 5818 2302 103 0 3 chr9 6930249 6930551 -110932076 + AluSx SINE Alu 1 301 -11 278 302 101 16 chr9 6930857 6930986 -110931641 + MIR3 SINE MIR 67 206 -2 293 299 186 26 chr9 6931474 6931705 -110930922 + L3 LINE CR1 891 1158 -419 2415 74 0 0 chr9 6931816 6932112 -110930515 - AluY SINE Alu -15 296 1 252 339 43 38 chr9 6932118 6932254 -110930373 + L3 LINE CR1 1372 1511 -66 2260 98 3 3 chr9 6932254 6932550 -110930077 + AluSp SINE Alu 1 296 -17 252 339 43 38 chr9 6932550 6932599 -110930028 + L3 LINE CR1 1511 1558 -19 412 247 129 32 chr9 6933145 6933331 -110929296 - MIR3 SINE MIR -4 204 1 854 286 51 83 chr9 6934836 6935026 -110927601 - MLT1J LTR MaLR 0 511 316 1872 117 92 0 chr9 6935026 6935307 -110927320 - AluSx SINE Alu -5 307 1 854 286 51 83 chr9 6935307 6935644 -110926983 - MLT1J LTR MaLR -195 316 1 2398 54 3 10 chr9 6935723 6936019 -110926608 + AluY SINE Alu 1 294 -17 2649 61 0 0 chr9 6936199 6936510 -110926117 - AluY SINE Alu 0 311 1 2128 116 0 35 chr9 6936510 6936821 -110925806 - AluSq SINE Alu -13 300 1 483 309 57 10 chr9 6937309 6937503 -110925124 + MIR SINE MIR 54 256 -6 1830 158 20 3 chr9 6937829 6938121 -110924506 - AluSx SINE Alu -15 297 1 262 0 53 0 chr9 6939448 6939486 -110923141 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 665 106 0 4 chr9 6939957 6940176 -110922451 + AluSx SINE Alu 3 301 -11 818 278 69 31 chr9 6940423 6940844 -110921783 - L1ME3 LINE L1 -196 5949 5513 1692 197 3 0 chr9 6940848 6941142 -110921485 - AluJo SINE Alu -17 295 1 532 200 159 3 chr9 6941158 6941308 -110921319 - L1MB7 LINE L1 -9 6155 5992 360 220 136 67 chr9 6941307 6941659 -110920968 - L1ME3 LINE L1 -686 5475 5102 * 296 245 50 80 chr9 6941708 6941908 -110920719 - L1ME3 LINE L1 -5016 1103 910 3820 174 42 52 chr9 6992441 6992602 -110870025 - L1M3f LINE L1 -4383 945 784 1989 127 6 41 chr9 6992602 6992776 -110869851 - AluSx SINE Alu -4 308 148 2278 49 39 29 chr9 6992776 6993084 -110869543 - AluY SINE Alu 0 311 1 1989 127 6 41 chr9 6993084 6993224 -110869403 - AluSx SINE Alu -164 148 5 3820 174 42 52 chr9 6993224 6993940 -110868687 - L1M3f LINE L1 -4544 784 77 384 240 0 0 chr9 6993940 6994061 -110868566 + (TA)n Simple_repeat Simple_repeat 1 121 0 2210 98 3 10 chr9 6994061 6994357 -110868270 - AluSc SINE Alu -15 294 1 458 138 0 58 chr9 6994358 6994445 -110868182 - L1M3f LINE L1 -5241 87 6 245 337 41 51 chr9 6994742 6994840 -110867787 - L2 LINE L2 -19 3253 3157 1543 203 42 3 chr9 6995479 6995809 -110866818 + MER2 DNA MER2_type 2 344 0 501 295 101 4 chr9 6996488 6996746 -110865881 - LTR16A LTR ERVL 0 450 168 184 340 85 35 chr9 6997417 6997558 -110865069 + MIR SINE MIR 21 168 -94 22 35 0 0 chr9 6998449 6998478 -110864149 + AT_rich Low_complexity Low_complexity 1 29 0 2931 90 7 7 chr9 6999455 6999900 -110862727 - L1P LINE L1 -3470 2676 2232 806 158 0 7 chr9 6999900 7000039 -110862588 - Tigger1 DNA MER2_type -1217 1201 1064 1149 112 0 0 chr9 7000039 7000191 -110862436 - AluSp SINE Alu -14 299 148 1514 112 5 27 chr9 7000191 7000414 -110862213 - AluSx SINE Alu -94 218 1 2852 135 100 27 chr9 7000414 7001015 -110861612 - Tigger1 DNA MER2_type -1346 1072 428 522 43 0 0 chr9 7001015 7001084 -110861543 + (GA)n Simple_repeat Simple_repeat 1 69 0 1517 187 59 0 chr9 7001084 7001405 -110861222 - Tigger1 DNA MER2_type -2076 342 3 830 112 0 70 chr9 7001915 7002058 -110860569 + FLAM_C SINE Alu 1 133 0 271 57 0 0 chr9 7003350 7003385 -110859242 - U2 snRNA snRNA -153 35 1 2313 87 0 0 chr9 7004322 7004611 -110858016 - AluY SINE Alu -22 289 1 187 182 0 0 chr9 7004613 7004646 -110857981 + MIR3 SINE MIR 154 186 -22 22 0 0 0 chr9 7006606 7006628 -110855999 + AT_rich Low_complexity Low_complexity 1 22 0 188 206 123 41 chr9 7006760 7006833 -110855794 + MIR SINE MIR 75 153 -55 21 0 0 0 chr9 7007436 7007457 -110855170 + AT_rich Low_complexity Low_complexity 1 21 0 336 48 0 0 chr9 7009821 7009863 -110852764 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 240 0 20 chr9 7011679 7011729 -110850898 + CT-rich Low_complexity Low_complexity 4 52 0 1125 184 45 58 chr9 7012054 7012364 -110850263 - L1ME1 LINE L1 -4 6162 5857 1733 157 35 3 chr9 7013371 7013531 -110849096 - AluSx SINE Alu -16 296 122 2223 117 10 7 chr9 7013531 7013840 -110848787 - AluSg SINE Alu 0 310 1 1733 157 35 3 chr9 7013840 7013966 -110848661 - AluSx SINE Alu -190 122 1 2768 7 0 3 chr9 7015830 7016136 -110846491 - AluYa5 SINE Alu -6 305 1 360 0 0 0 chr9 7016260 7016300 -110846327 + (TG)n Simple_repeat Simple_repeat 1 40 0 462 277 35 7 chr9 7017370 7017511 -110845116 + MIR SINE MIR 98 242 -20 2102 188 25 11 chr9 7018343 7018821 -110843806 + L1MB7 LINE L1 5691 6175 -9 21 0 0 0 chr9 7018954 7018975 -110843652 + AT_rich Low_complexity Low_complexity 1 21 0 422 195 0 0 chr9 7019017 7019104 -110843523 + L1ME2 LINE L1 6068 6154 -10 22 35 0 0 chr9 7021340 7021369 -110841258 + AT_rich Low_complexity Low_complexity 1 29 0 905 252 96 15 chr9 7022270 7022603 -110840024 - MLT1E2 LTR MaLR 0 626 267 331 225 0 25 chr9 7022601 7022681 -110839946 - MLT1E2 LTR MaLR -407 98 21 * 759 161 22 29 chr9 7022755 7022892 -110839735 + AluJ SINE Alu 1 136 -176 32 0 0 0 chr9 7023605 7023637 -110838990 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 7023702 7023723 -110838904 + AT_rich Low_complexity Low_complexity 1 21 0 981 189 0 0 chr9 7026300 7026485 -110836142 - L1MC1 LINE L1 -12 6321 6137 781 139 0 15 chr9 7026529 7026666 -110835961 - L1MC1 LINE L1 -184 6149 6015 252 0 0 0 chr9 7026679 7026707 -110835920 + (TG)n Simple_repeat Simple_repeat 2 29 0 879 184 6 12 chr9 7027621 7027784 -110834843 + AluJ SINE Alu 136 297 -15 212 305 95 38 chr9 7028922 7029027 -110833600 - L2 LINE L2 -13 3259 3149 285 332 51 16 chr9 7029035 7029175 -110833452 + MER5B DNA MER1_type 38 175 -3 265 277 70 7 chr9 7029578 7029704 -110832923 + MIR SINE MIR 48 151 -57 472 321 132 35 chr9 7030478 7030818 -110831809 + L1MC/D LINE L1 5431 5803 -318 2134 134 3 0 chr9 7031093 7031392 -110831235 + AluSx SINE Alu 1 300 -12 290 49 0 0 chr9 7033638 7033679 -110828948 - AluJ/F(R)AM SINE Alu -114 197 157 1177 174 0 15 chr9 7033681 7033876 -110828751 - AluJo SINE Alu -119 193 2 251 234 78 13 chr9 7034243 7034320 -110828307 + L1MC/D LINE L1 5800 5881 -1927 387 261 203 39 chr9 7035862 7036069 -110826558 + MIR SINE MIR 12 252 -10 21 36 0 0 chr9 7036740 7036768 -110825859 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr9 7036919 7036959 -110825668 + AT_rich Low_complexity Low_complexity 1 40 0 522 280 63 0 chr9 7037417 7037560 -110825067 - MIR SINE MIR -3 259 108 267 174 167 72 chr9 7037589 7037727 -110824900 + L1ME4a LINE L1 5314 5464 -2344 486 275 53 8 chr9 7037804 7038048 -110824579 + L1ME4a LINE L1 5595 5849 -272 2118 110 3 41 chr9 7040977 7041294 -110821333 - AluSp SINE Alu -8 305 1 1335 210 24 66 chr9 7041500 7041881 -110820746 + MLT1A1 LTR MaLR 1 365 0 839 138 239 0 chr9 7043315 7043482 -110819145 - AluJo SINE Alu -105 207 1 1854 273 150 16 chr9 7044159 7044925 -110817702 + L2 LINE L2 837 1705 -1609 5296 116 15 29 chr9 7044947 7045781 -110816846 - L1PA16 LINE L1 -13 6153 5309 2199 103 3 7 chr9 7045781 7046073 -110816554 - AluSg SINE Alu -19 291 1 5296 116 15 29 chr9 7046073 7046141 -110816486 - L1PA16 LINE L1 -857 5309 5242 599 59 0 12 chr9 7046141 7046226 -110816401 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 5296 116 15 29 chr9 7046226 7046340 -110816287 - L1PA16 LINE L1 -924 5242 5160 310 325 57 46 chr9 7046341 7046451 -110816176 + L2 LINE L2 1701 1808 -1506 501 62 0 0 chr9 7046451 7046516 -110816111 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2115 111 4 0 chr9 7046517 7046797 -110815830 - AluSq SINE Alu -32 281 1 310 325 57 46 chr9 7046797 7046878 -110815749 + L2 LINE L2 1807 1896 -1418 1076 190 143 60 chr9 7046892 7047277 -110815350 - LTR8A LTR ERV1 0 727 311 1380 121 43 5 chr9 7047278 7047485 -110815142 + AluSg/x SINE Alu 77 291 -21 929 160 166 22 chr9 7047523 7047858 -110814769 - LTR29 LTR ERV1 -198 424 1 1946 276 122 41 chr9 7047877 7048940 -110813687 + L2 LINE L2 1937 3090 -223 499 224 65 0 chr9 7048942 7049049 -110813578 + L2 LINE L2 3200 3313 0 1842 185 0 0 chr9 7049387 7049685 -110812942 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr9 7050151 7050180 -110812447 + AT_rich Low_complexity Low_complexity 1 29 0 260 252 41 16 chr9 7051196 7051319 -110811308 + LTR33 LTR ERVL 1 126 -395 241 294 55 40 chr9 7051407 7051608 -110811019 + LTR33 LTR ERVL 303 506 -15 303 286 29 0 chr9 7052320 7052390 -110810237 + C-rich Low_complexity Low_complexity 3 74 0 450 216 29 0 chr9 7052411 7052513 -110810114 - FLAM_C SINE Alu -26 107 3 459 0 0 0 chr9 7054012 7054063 -110808564 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1954 153 0 0 chr9 7054064 7054352 -110808275 - AluSx SINE Alu -24 288 1 235 350 91 0 chr9 7054736 7054879 -110807748 + L2 LINE L2 1813 1968 -1346 517 280 242 22 chr9 7054883 7055247 -110807380 + L2 LINE L2 1723 2166 -1148 308 233 100 33 chr9 7055249 7055369 -110807258 + L2 LINE L2 3159 3286 -27 21 0 0 0 chr9 7055522 7055543 -110807084 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr9 7056388 7056413 -110806214 + (T)n Simple_repeat Simple_repeat 1 25 0 207 305 102 31 chr9 7056527 7056655 -110805972 - MIR SINE MIR -92 170 34 365 187 78 12 chr9 7057409 7057575 -110805052 + (TA)n Simple_repeat Simple_repeat 2 178 0 332 199 54 36 chr9 7057520 7057686 -110804941 + (TATAA)n Simple_repeat Simple_repeat 5 173 0 * 251 254 45 0 chr9 7057768 7057835 -110804792 - MER5B DNA MER1_type -7 171 102 1915 170 0 0 chr9 7058429 7058723 -110803904 - AluJb SINE Alu -18 294 1 223 203 95 0 chr9 7059522 7059596 -110803031 - MIR SINE MIR -132 130 50 722 220 56 33 chr9 7059619 7059833 -110802794 + MER20 DNA MER1_type 1 219 0 324 143 0 0 chr9 7060771 7060827 -110801800 - Alu SINE Alu 0 300 245 23 0 0 0 chr9 7061077 7061100 -110801527 + AT_rich Low_complexity Low_complexity 1 23 0 1769 83 36 7 chr9 7061100 7061378 -110801249 - L1MA5A LINE L1 -1 6296 6011 420 276 70 68 chr9 7062071 7062455 -110800172 + L1ME4a LINE L1 5477 5861 -260 189 107 0 0 chr9 7062462 7062490 -110800137 + (TA)n Simple_repeat Simple_repeat 1 28 0 2223 100 3 0 chr9 7062510 7062799 -110799828 - AluSq SINE Alu -23 290 1 2631 85 26 8 chr9 7066073 7066461 -110796166 + L1MA1 LINE L1 5908 6302 0 718 231 75 6 chr9 7066597 7066770 -110795857 + MER58A DNA MER1_type 39 223 -1 21 0 0 0 chr9 7068143 7068164 -110794463 + AT_rich Low_complexity Low_complexity 1 21 0 2112 122 3 10 chr9 7068362 7068658 -110793969 + AluSx SINE Alu 1 294 -18 711 227 91 91 chr9 7069236 7069796 -110792831 - MER69 DNA AcHobo -207 2319 1760 486 281 52 30 chr9 7069837 7070068 -110792559 - MER69 DNA AcHobo -914 312 77 26 0 0 0 chr9 7070495 7070521 -110792106 + AT_rich Low_complexity Low_complexity 1 26 0 349 290 84 39 chr9 7070673 7070828 -110791799 + MER5B DNA MER1_type 17 178 0 10115 46 18 32 chr9 7071432 7072727 -110789900 - SVA Other Other -6 1380 104 1430 183 129 0 chr9 7072970 7073233 -110789394 - AluJb SINE Alu -5 297 1 1306 206 14 27 chr9 7073487 7073779 -110788848 + AluJb SINE Alu 1 288 -24 260 217 0 0 chr9 7074204 7074264 -110788363 + A-rich Low_complexity Low_complexity 1 60 0 360 0 0 0 chr9 7074337 7074377 -110788250 + (CA)n Simple_repeat Simple_repeat 2 41 0 287 254 0 44 chr9 7074640 7074754 -110787873 - Charlie8 DNA MER1_type -2258 159 51 274 238 12 0 chr9 7074763 7074843 -110787784 + (CA)n Simple_repeat Simple_repeat 2 82 0 576 110 134 0 chr9 7075242 7075369 -110787258 + L1P LINE L1 5254 5397 -764 948 146 139 0 chr9 7075369 7075527 -110787100 + AluSx SINE Alu 19 198 -114 24 32 0 0 chr9 7075871 7075902 -110786725 + AT_rich Low_complexity Low_complexity 1 31 0 203 214 34 51 chr9 7076423 7076540 -110786087 + (CATATA)n Simple_repeat Simple_repeat 3 117 0 2093 118 0 0 chr9 7076699 7076987 -110785640 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 7076987 7077008 -110785619 + AT_rich Low_complexity Low_complexity 1 21 0 271 156 0 0 chr9 7077499 7077544 -110785083 + Alu SINE Alu 2 46 -254 29 0 0 0 chr9 7077552 7077581 -110785046 + AT_rich Low_complexity Low_complexity 1 29 0 532 274 117 48 chr9 7077768 7077998 -110784629 - MIR SINE MIR -11 251 6 1331 110 0 6 chr9 7079113 7079295 -110783332 + AluSg/x SINE Alu 119 299 -11 28 29 0 0 chr9 7079808 7079843 -110782784 + AT_rich Low_complexity Low_complexity 1 35 0 2414 69 0 10 chr9 7079949 7080253 -110782374 + AluSc SINE Alu 1 301 -8 1136 153 6 0 chr9 7080253 7080430 -110782197 + AluJb SINE Alu 134 311 -1 345 47 0 0 chr9 7080485 7080528 -110782099 + (TG)n Simple_repeat Simple_repeat 1 43 0 647 174 16 0 chr9 7080528 7080649 -110781978 + L1MC1 LINE L1 6210 6332 -1 1128 151 170 0 chr9 7080769 7080987 -110781640 - AluJo SINE Alu -57 255 1 1539 166 95 14 chr9 7082315 7082598 -110780029 - AluJo SINE Alu -6 306 1 311 188 16 16 chr9 7082861 7082925 -110779702 - MER20 DNA MER1_type -154 65 2 186 43 0 0 chr9 7083753 7083776 -110778851 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 621 260 158 0 chr9 7085051 7085228 -110777399 + MIR SINE MIR 34 238 -24 21 36 0 0 chr9 7086068 7086096 -110776531 + AT_rich Low_complexity Low_complexity 1 28 0 3754 60 0 4 chr9 7086128 7086611 -110776016 - L1PA5 LINE L1 0 6154 5674 1873 57 0 4 chr9 7086611 7086841 -110775786 + AluY SINE Alu 73 301 -10 1171 108 0 0 chr9 7086848 7087005 -110775622 + AluSg/x SINE Alu 136 292 -18 269 193 24 12 chr9 7087323 7087406 -110775221 + (TA)n Simple_repeat Simple_repeat 2 85 0 794 283 87 49 chr9 7087479 7087973 -110774654 - MLT2B1 LTR ERVL -7 513 1 467 198 0 0 chr9 7087975 7088076 -110774551 + L1M4 LINE L1 3821 3921 -2225 414 268 82 64 chr9 7088137 7088230 -110774397 + L1M4 LINE L1 4013 4103 -2043 2257 50 43 0 chr9 7088230 7088509 -110774118 - AluYa5 SINE Alu -20 291 1 414 268 82 64 chr9 7088509 7088635 -110773992 + L1M4 LINE L1 4103 4236 -1910 634 282 60 23 chr9 7088791 7089177 -110773450 + L1M4 LINE L1 4945 5344 -802 2177 113 3 3 chr9 7089181 7089482 -110773145 + AluSx SINE Alu 1 301 -11 218 328 89 89 chr9 7089859 7090106 -110772521 + MIR SINE MIR 13 259 -3 23 68 0 0 chr9 7090125 7090169 -110772458 + AT_rich Low_complexity Low_complexity 1 44 0 668 186 34 8 chr9 7090240 7090358 -110772269 + FLAM_C SINE Alu 3 123 -20 1977 144 3 0 chr9 7090991 7091276 -110771351 - AluSx SINE Alu -26 286 1 21 0 0 0 chr9 7091754 7091775 -110770852 + AT_rich Low_complexity Low_complexity 1 21 0 371 246 39 14 chr9 7091904 7092101 -110770526 - MLT1K LTR MaLR -170 418 165 21 57 0 0 chr9 7093083 7093118 -110769509 + AT_rich Low_complexity Low_complexity 1 35 0 377 312 111 11 chr9 7093965 7094154 -110768473 - L2 LINE L2 -6 3307 3100 180 152 0 0 chr9 7094296 7094329 -110768298 + (TA)n Simple_repeat Simple_repeat 1 33 0 712 189 0 15 chr9 7095253 7095385 -110767242 - FLAM_C SINE Alu -13 130 1 321 262 8 74 chr9 7096113 7096235 -110766392 + MIR SINE MIR 60 173 -89 2093 121 7 0 chr9 7096401 7096698 -110765929 - AluSx SINE Alu -13 299 1 277 241 0 100 chr9 7097496 7097611 -110765016 + MIR SINE MIR 34 137 -71 2141 114 14 0 chr9 7097806 7098095 -110764532 + AluSx SINE Alu 7 299 -13 802 122 0 0 chr9 7099053 7099168 -110763459 - AluJo SINE Alu -176 136 22 21 0 0 0 chr9 7099343 7099364 -110763263 + AT_rich Low_complexity Low_complexity 1 21 0 583 280 0 14 chr9 7100133 7100276 -110762351 - MIR SINE MIR -74 188 48 1307 186 29 7 chr9 7100603 7100877 -110761750 - MLT1-int LTR MaLR -456 915 636 496 193 158 0 chr9 7103872 7104043 -110758584 - L1ME4a LINE L1 0 6121 5924 495 264 57 16 chr9 7104434 7104627 -110758000 - MER112 DNA MER1_type -58 202 2 659 179 8 0 chr9 7105496 7105613 -110757014 + FLAM_C SINE Alu 1 118 -15 486 0 0 0 chr9 7105615 7105669 -110756958 + (CA)n Simple_repeat Simple_repeat 2 55 0 211 191 34 34 chr9 7105841 7105930 -110756697 + T-rich Low_complexity Low_complexity 2 90 0 337 301 164 44 chr9 7107061 7107403 -110755224 + L2 LINE L2 2465 2847 -467 293 336 22 111 chr9 7107458 7107684 -110754943 - L2 LINE L2 -108 3164 2959 2022 139 0 23 chr9 7107738 7108047 -110754580 - AluSx SINE Alu -10 302 1 213 213 0 0 chr9 7108262 7108309 -110754318 + (TG)n Simple_repeat Simple_repeat 2 48 0 951 170 16 6 chr9 7108971 7109153 -110753474 - L1MD1 LINE L1 -5 6237 6054 1706 162 29 35 chr9 7109931 7110245 -110752382 + AluJo SINE Alu 1 312 0 483 18 0 0 chr9 7110716 7110772 -110751855 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 722 308 106 22 chr9 7110773 7111140 -110751487 + L2 LINE L2 2884 3281 -32 1577 180 10 17 chr9 7111841 7112135 -110750492 - AluJo SINE Alu -20 292 1 1554 178 20 49 chr9 7113136 7113440 -110749187 - AluJb SINE Alu -15 297 3 668 200 0 8 chr9 7113810 7113940 -110748687 + FLAM_A SINE Alu 1 129 -4 1734 166 52 28 chr9 7116021 7116346 -110746281 - MER1B DNA MER1_type -6 333 1 249 98 0 0 chr9 7117384 7117425 -110745202 + (CA)n Simple_repeat Simple_repeat 2 42 0 254 253 27 73 chr9 7117485 7117635 -110744992 + L1ME LINE L1 5742 5884 -237 2472 58 0 0 chr9 7117733 7118026 -110744601 - AluY SINE Alu -18 293 1 902 89 7 30 chr9 7118048 7118183 -110744444 - L1PB4 LINE L1 -13 6143 6012 253 284 0 11 chr9 7118950 7119045 -110743582 + L1MEd LINE L1 18 111 -6008 222 321 0 37 chr9 7119127 7119208 -110743419 + MIR SINE MIR 116 193 -69 226 240 53 67 chr9 7119584 7119659 -110742968 + L1MEd LINE L1 549 622 -5497 284 273 121 15 chr9 7119686 7119818 -110742809 + MIR3 SINE MIR 31 176 -32 2045 133 0 7 chr9 7120573 7120905 -110741722 + AluSx SINE Alu 1 312 0 32 43 0 0 chr9 7121396 7121442 -110741185 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 7122239 7122271 -110740356 + AT_rich Low_complexity Low_complexity 1 32 0 201 219 24 0 chr9 7122770 7122811 -110739816 - MIR SINE MIR -151 111 70 2084 130 0 0 chr9 7123647 7123940 -110738687 - AluSx SINE Alu -13 299 7 533 215 75 5 chr9 7124068 7124254 -110738373 - L1MA7 LINE L1 0 6291 6093 398 339 0 8 chr9 7124497 7124618 -110738009 - MIR SINE MIR -122 140 21 1862 145 0 17 chr9 7124629 7124919 -110737708 - AluSx SINE Alu -27 285 1 22 0 0 0 chr9 7125069 7125091 -110737536 + AT_rich Low_complexity Low_complexity 1 22 0 2833 119 54 29 chr9 7126629 7126907 -110735720 - LTR22B LTR ERVK 0 492 195 2420 80 3 0 chr9 7126907 7127206 -110735421 + AluSq SINE Alu 1 300 -13 2833 119 54 29 chr9 7127206 7127407 -110735220 - LTR22B LTR ERVK -296 196 1 27 0 0 0 chr9 7128685 7128712 -110733915 + AT_rich Low_complexity Low_complexity 1 27 0 568 181 49 62 chr9 7129407 7129650 -110732977 - Charlie1 DNA MER1_type 0 2761 2522 1504 209 16 16 chr9 7129658 7129979 -110732648 + L1M3e LINE L1 2 322 -6708 2538 238 39 62 chr9 7129979 7131025 -110731602 + L1M3e LINE L1 1216 2245 -4792 1511 270 109 10 chr9 7131026 7131522 -110731105 - Charlie1a DNA MER1_type -907 548 4 1929 163 116 2 chr9 7131539 7131943 -110730684 + Tigger2 DNA MER2_type 1 450 -2268 2007 142 10 10 chr9 7132517 7132826 -110729801 + AluSq SINE Alu 3 311 -2 191 286 14 43 chr9 7132892 7132962 -110729665 + L2 LINE L2 3201 3268 -4 1317 188 7 44 chr9 7133824 7134095 -110728532 - AluJo SINE Alu -14 298 38 306 0 0 0 chr9 7136669 7136703 -110725924 + (CA)n Simple_repeat Simple_repeat 2 35 0 39 50 0 0 chr9 7137234 7137294 -110725333 + AT_rich Low_complexity Low_complexity 1 60 0 2434 82 0 0 chr9 7137873 7138176 -110724451 - AluY SINE Alu -8 303 1 2124 127 3 0 chr9 7138176 7138475 -110724152 - AluSx SINE Alu -11 301 1 1949 164 0 3 chr9 7138686 7138985 -110723642 - AluJo SINE Alu -13 299 2 22 35 0 0 chr9 7139230 7139259 -110723368 + AT_rich Low_complexity Low_complexity 1 29 0 1664 170 112 3 chr9 7139799 7140111 -110722516 - MER7A DNA MER2_type 0 346 3 22 0 0 0 chr9 7142309 7142331 -110720296 + AT_rich Low_complexity Low_complexity 1 22 0 1710 137 19 55 chr9 7142332 7142711 -110719916 - L1MA2 LINE L1 -3 7720 7356 301 70 47 0 chr9 7142721 7142764 -110719863 - L1M LINE L1 -895 6826 6782 189 0 0 0 chr9 7142778 7142799 -110719828 + (TG)n Simple_repeat Simple_repeat 2 22 0 20479 170 28 16 chr9 7142803 7142814 -110719813 - L1MA2 LINE L1 -762 6803 6794 2221 83 24 0 chr9 7142814 7143102 -110719525 - AluSx SINE Alu -17 295 1 20479 170 28 16 chr9 7143102 7145999 -110716628 - L1MA2 LINE L1 -771 6794 3933 5598 39 3 0 chr9 7145999 7146673 -110715954 - L1PA4 LINE L1 -8 6147 5472 20479 170 28 16 chr9 7146673 7147580 -110715047 - L1MA2 LINE L1 -3632 3933 3038 2033 142 3 3 chr9 7147580 7147891 -110714736 + AluSx SINE Alu 1 311 -1 20479 170 28 16 chr9 7147891 7150783 -110711844 - L1MA2 LINE L1 -4527 3038 19 39 60 0 0 chr9 7151203 7151270 -110711357 + AT_rich Low_complexity Low_complexity 1 67 0 1638 156 28 0 chr9 7152013 7152302 -110710325 + L1MC1 LINE L1 6037 6333 0 402 57 0 0 chr9 7152780 7152833 -110709794 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 2053 117 7 0 chr9 7152835 7153118 -110709509 - AluSx SINE Alu -27 285 1 213 196 0 0 chr9 7153261 7153307 -110709320 + (TA)n Simple_repeat Simple_repeat 1 46 0 222 37 0 0 chr9 7153334 7153361 -110709266 + (TG)n Simple_repeat Simple_repeat 2 28 0 226 306 68 41 chr9 7154257 7154404 -110708223 - MIR3 SINE MIR -46 162 12 23 0 0 0 chr9 7154800 7154823 -110707804 + AT_rich Low_complexity Low_complexity 1 23 0 5483 140 45 19 chr9 7155739 7156658 -110705969 - L1MA5A LINE L1 0 6297 5403 1874 169 0 6 chr9 7156658 7156972 -110705655 - AluJb SINE Alu 0 312 1 5483 140 45 19 chr9 7156972 7157889 -110704738 - L1MA5A LINE L1 -894 5403 4408 253 224 198 35 chr9 7158417 7158533 -110704094 + L2 LINE L2 3179 3313 0 259 370 8 0 chr9 7160325 7160444 -110702183 - L1MC/D LINE L1 -2153 6450 6331 241 241 36 36 chr9 7160751 7160863 -110701764 - L1MC/D LINE L1 -1070 5871 5760 512 278 159 48 chr9 7160944 7161145 -110701482 - L1MC/D LINE L1 -5082 1849 1672 2205 155 63 17 chr9 7161145 7161559 -110701068 - Tigger2a DNA MER2_type 0 434 2 512 278 159 48 chr9 7161559 7161709 -110700918 - L1MC/D LINE L1 -5259 1672 1459 544 223 107 22 chr9 7161709 7161933 -110700694 - L1MEd LINE L1 -4313 1997 1755 342 169 0 0 chr9 7161954 7162019 -110700608 + CT-rich Low_complexity Low_complexity 4 68 0 423 92 0 0 chr9 7162028 7162093 -110700534 + (TG)n Simple_repeat Simple_repeat 2 66 0 937 305 45 34 chr9 7162093 7162744 -110699883 - L1MEd LINE L1 -4555 1755 1056 2011 136 33 9 chr9 7162752 7163084 -110699543 - MER2 DNA MER2_type -5 340 1 449 291 58 16 chr9 7163173 7163431 -110699196 - L1MC/D LINE L1 -5041 1382 1114 404 265 68 0 chr9 7163810 7163927 -110698700 - MIR SINE MIR -98 164 40 530 280 108 11 chr9 7164523 7164709 -110697918 + MER58A DNA MER1_type 21 224 0 290 370 62 0 chr9 7164710 7164872 -110697755 + MIR SINE MIR 80 251 -11 196 320 144 49 chr9 7165609 7165893 -110696734 - L2 LINE L2 -2 3311 3001 639 303 213 15 chr9 7166088 7166695 -110695932 - L2 LINE L2 -684 2630 1904 338 300 86 7 chr9 7169277 7169417 -110693210 + Charlie8 DNA MER1_type 7 157 -2260 232 340 186 16 chr9 7169836 7170083 -110692544 + L3b LINE CR1 1284 1572 -11 470 183 8 11 chr9 7173522 7173670 -110688957 - MER20 DNA MER1_type -9 210 3 215 191 0 0 chr9 7174013 7174055 -110688572 + L2 LINE L2 3271 3312 -1 438 36 0 0 chr9 7174521 7174577 -110688050 + (GA)n Simple_repeat Simple_repeat 2 57 0 200 200 0 0 chr9 7175974 7176009 -110686618 + CT-rich Low_complexity Low_complexity 2 36 0 1613 114 0 4 chr9 7176639 7176867 -110685760 + AluSc SINE Alu 76 302 -7 258 229 383 11 chr9 7179100 7179275 -110683352 + MIR SINE MIR 21 260 -2 411 298 39 29 chr9 7180011 7180216 -110682411 + MER63A DNA MER1_type 4 210 0 1984 230 93 5 chr9 7180216 7180807 -110681820 + Charlie1 DNA MER1_type 1466 2108 -653 700 163 0 0 chr9 7180812 7180935 -110681692 - AluJo SINE Alu -7 305 183 * 724 181 7 21 chr9 7180926 7181070 -110681557 - AluJo SINE Alu -170 142 1 2418 164 93 21 chr9 7181078 7181683 -110680944 + Charlie1 DNA MER1_type 2114 2761 0 2234 92 0 0 chr9 7182114 7182447 -110680180 - AluSc SINE Alu 0 333 1 246 274 56 68 chr9 7182687 7182939 -110679688 - HAL1 LINE L1 -156 2351 2103 312 250 24 0 chr9 7182941 7183025 -110679602 - HAL1 LINE L1 -540 1967 1882 361 278 112 0 chr9 7183050 7183219 -110679408 - HAL1 LINE L1 -1602 905 718 1174 293 75 28 chr9 7183225 7183646 -110678981 - HAL1 LINE L1 -1828 679 279 2224 93 0 3 chr9 7183646 7183935 -110678692 - AluY SINE Alu -23 288 1 1174 293 75 28 chr9 7183935 7184041 -110678586 - HAL1 LINE L1 -2228 279 179 1719 194 13 7 chr9 7184041 7184351 -110678276 - AluJb SINE Alu 0 312 1 1174 293 75 28 chr9 7184351 7184464 -110678163 - HAL1 LINE L1 -2328 179 8 27 0 0 0 chr9 7184902 7184929 -110677698 + AT_rich Low_complexity Low_complexity 1 27 0 230 167 0 21 chr9 7185183 7185231 -110677396 - L2 LINE L2 0 3313 3267 396 230 40 55 chr9 7185632 7185832 -110676795 + Charlie5 DNA MER1_type 1 197 -2415 751 180 64 21 chr9 7185836 7186069 -110676558 + Charlie5 DNA MER1_type 2352 2594 -18 21 0 0 0 chr9 7189294 7189315 -110673312 + AT_rich Low_complexity Low_complexity 1 21 0 2363 72 0 3 chr9 7189471 7189763 -110672864 - AluY SINE Alu -20 291 1 257 354 53 0 chr9 7190139 7190252 -110672375 + MIR SINE MIR 11 129 -133 2443 102 0 0 chr9 7190351 7190664 -110671963 - AluSq SINE Alu 0 313 1 236 331 55 8 chr9 7190720 7190847 -110671780 + MIR SINE MIR 130 262 0 635 167 0 0 chr9 7191083 7191179 -110671448 + FRAM SINE Alu 51 146 -30 195 42 0 0 chr9 7191181 7191205 -110671422 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 340 283 101 0 chr9 7191205 7191343 -110671284 - L1MD2 LINE L1 -13 6346 6195 333 300 77 15 chr9 7191439 7191766 -110670861 + L1ME1 LINE L1 1868 2214 -4182 3886 248 79 35 chr9 7191775 7193488 -110669139 + L1ME1 LINE L1 3445 5351 -884 302 95 0 0 chr9 7193488 7193530 -110669097 + 5S rRNA rRNA 1 42 -79 3886 248 79 35 chr9 7193530 7194424 -110668203 + L1ME1 LINE L1 5351 6204 -31 488 156 0 0 chr9 7194480 7194570 -110668057 - L1MA6 LINE L1 0 6300 6211 189 238 111 0 chr9 7194967 7195030 -110667597 + MIR SINE MIR 178 247 -15 196 268 61 24 chr9 7195069 7195151 -110667476 - MIR3 SINE MIR -118 90 6 2018 149 0 10 chr9 7195831 7196133 -110666494 - AluSx SINE Alu -12 300 2 1434 177 53 61 chr9 7196974 7197398 -110665229 + MSTB1 LTR MaLR 3 416 -16 477 114 0 0 chr9 7197477 7197547 -110665080 - AluSp/q SINE Alu -10 303 234 214 373 36 0 chr9 7197945 7198055 -110664572 - MIR SINE MIR -146 116 3 195 129 0 0 chr9 7198121 7198152 -110664475 + (CAA)n Simple_repeat Simple_repeat 3 33 0 359 291 68 0 chr9 7199148 7199265 -110663362 - MIR SINE MIR -76 186 62 22 0 0 0 chr9 7199756 7199778 -110662849 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 7199845 7199866 -110662761 + AT_rich Low_complexity Low_complexity 1 21 0 567 209 0 9 chr9 7200481 7200596 -110662031 - MER68 LTR ERV1 -6 556 443 1510 140 34 23 chr9 7200609 7200874 -110661753 - MER68 LTR ERV1 -285 277 10 2043 142 7 0 chr9 7200986 7201289 -110661338 - AluSx SINE Alu -7 305 1 531 294 62 5 chr9 7201415 7201626 -110661001 + Charlie2 DNA MER1_type 12 234 -2628 601 266 131 26 chr9 7201767 7202132 -110660495 + MLT1J1 LTR MaLR 16 422 -28 760 151 45 50 chr9 7202183 7202382 -110660245 + Charlie2a DNA MER1_type 1466 1663 -1199 1028 199 50 9 chr9 7204823 7205044 -110657583 - MER46A DNA MER2_type -1 235 6 1686 175 42 9 chr9 7205047 7205378 -110657249 - MER7A DNA MER2_type -6 340 1 333 0 0 0 chr9 7205379 7205416 -110657211 + (TG)n Simple_repeat Simple_repeat 2 38 0 477 260 106 31 chr9 7205851 7206078 -110656549 + MLT1I LTR MaLR 141 384 -25 445 287 154 0 chr9 7206281 7206424 -110656203 + MIR SINE MIR 70 234 -28 512 344 75 40 chr9 7206445 7206843 -110655784 - L2 LINE L2 -10 3262 2851 248 252 207 9 chr9 7206855 7206966 -110655661 + MIR3 SINE MIR 9 141 -67 26 0 0 0 chr9 7207328 7207354 -110655273 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 7207509 7207540 -110655087 + AT_rich Low_complexity Low_complexity 1 31 0 2318 87 0 7 chr9 7207541 7207839 -110654788 + AluSx SINE Alu 1 296 -16 254 225 84 0 chr9 7208464 7208535 -110654092 + Charlie2 DNA MER1_type 93 169 -2693 2150 215 116 26 chr9 7208684 7209580 -110653047 + Charlie2 DNA MER1_type 1847 2823 -39 373 243 83 95 chr9 7209621 7209790 -110652837 + MER5A DNA MER1_type 1 167 -22 183 80 0 0 chr9 7210507 7210532 -110652095 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 7213239 7213260 -110649367 + AT_rich Low_complexity Low_complexity 1 21 0 215 238 284 4 chr9 7213860 7213988 -110648639 - MIR SINE MIR -51 211 41 27 0 0 0 chr9 7215030 7215057 -110647570 + AT_rich Low_complexity Low_complexity 1 27 0 604 190 127 16 chr9 7215259 7215482 -110647145 - Charlie4 DNA MER1_type -20 1941 225 307 319 67 22 chr9 7215654 7215789 -110646838 - MIR SINE MIR -15 247 107 353 0 0 0 chr9 7216017 7216061 -110646566 - L1PA3 LINE L1 -3 6152 6109 487 228 62 28 chr9 7221287 7221432 -110641195 + MER5A DNA MER1_type 4 153 -36 201 206 27 27 chr9 7221541 7221614 -110641013 + T-rich Low_complexity Low_complexity 6 78 0 713 178 39 31 chr9 7221787 7221916 -110640711 + AluJo SINE Alu 6 135 -177 2212 124 0 0 chr9 7222082 7222381 -110640246 - AluSx SINE Alu -13 299 1 267 152 0 0 chr9 7222487 7222533 -110640094 + T-rich Low_complexity Low_complexity 3 48 0 216 0 0 0 chr9 7224051 7224075 -110638552 + (T)n Simple_repeat Simple_repeat 1 24 0 405 311 76 58 chr9 7225626 7225851 -110636776 + L2 LINE L2 3044 3272 0 313 346 53 0 chr9 7225905 7226038 -110636589 - MER91C DNA MER1_type 0 140 1 440 291 93 13 chr9 7226987 7227138 -110635489 + MIR SINE MIR 14 176 -86 218 167 0 0 chr9 7227184 7227220 -110635407 + (CTG)n Simple_repeat Simple_repeat 3 38 0 264 330 10 10 chr9 7227247 7227344 -110635283 - MIR SINE MIR -108 154 58 31 26 0 0 chr9 7228389 7228427 -110634200 + AT_rich Low_complexity Low_complexity 1 38 0 687 196 0 0 chr9 7228429 7228536 -110634091 - FLAM_C SINE Alu -36 107 1 225 0 0 0 chr9 7229589 7229614 -110633013 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2013 154 0 0 chr9 7229973 7230278 -110632349 - AluJb SINE Alu -7 305 1 22 0 0 0 chr9 7231004 7231026 -110631601 + AT_rich Low_complexity Low_complexity 1 22 0 1462 133 246 13 chr9 7231552 7231853 -110630774 + THE1C LTR MaLR 5 375 0 290 270 69 22 chr9 7231865 7232027 -110630600 - L1MC5 LINE L1 -975 6833 6671 23 0 0 0 chr9 7232148 7232171 -110630456 + AT_rich Low_complexity Low_complexity 1 23 0 777 202 32 87 chr9 7232885 7232978 -110629649 - MIR SINE MIR -10 252 155 1122 184 108 0 chr9 7232978 7233190 -110629437 + MER46A DNA MER2_type 2 236 0 777 202 32 87 chr9 7233190 7233349 -110629278 - MIR SINE MIR -107 155 14 237 308 88 22 chr9 7233333 7233424 -110629203 - L2 LINE L2 -343 2970 2874 * 321 211 26 0 chr9 7235777 7235853 -110626774 - MER116 DNA Mariner -2 78 1 1512 161 93 21 chr9 7236565 7236856 -110625771 + AluJo SINE Alu 1 312 0 281 316 102 21 chr9 7238694 7238881 -110623746 - MIR SINE MIR 0 262 61 410 208 0 10 chr9 7239267 7239368 -110623259 - L1M4 LINE L1 -1424 4722 4623 378 0 0 0 chr9 7239368 7239410 -110623217 + (CA)n Simple_repeat Simple_repeat 2 43 0 619 220 125 102 chr9 7241091 7241514 -110621113 + Charlie4a DNA MER1_type 56 488 -20 290 343 96 36 chr9 7241602 7241768 -110620859 + L2 LINE L2 3076 3251 -21 305 186 119 51 chr9 7242728 7242846 -110619781 - L1ME4a LINE L1 -46 6075 5950 1801 219 88 24 chr9 7242851 7243349 -110619278 - MLT1H LTR MaLR -19 530 1 2493 119 111 3 chr9 7243769 7243981 -110618646 - MSTA LTR MaLR 0 428 240 243 0 0 0 chr9 7243981 7244008 -110618619 + (CA)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr9 7244007 7244027 -110618600 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2493 119 111 3 chr9 7244008 7244200 -110618427 - MSTA LTR MaLR -188 240 1 194 271 45 98 chr9 7244219 7244352 -110618275 + MIR SINE MIR 64 189 -73 186 300 118 64 chr9 7245280 7245390 -110617237 - L2 LINE L2 0 3272 3157 325 200 100 20 chr9 7245815 7245915 -110616712 - MIR SINE MIR -82 180 73 217 285 55 64 chr9 7246771 7247025 -110615602 + L2 LINE L2 2726 2960 -312 208 179 0 0 chr9 7247789 7247828 -110614799 - MIR SINE MIR -6 256 218 289 181 0 84 chr9 7247858 7247941 -110614686 - L1M4 LINE L1 -5870 672 597 2500 267 100 38 chr9 7248172 7248754 -110613873 + L1MC4 LINE L1 6459 7003 -1039 387 119 0 0 chr9 7248754 7248821 -110613806 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 2500 267 100 38 chr9 7248821 7249487 -110613140 + L1MC4 LINE L1 7003 7785 -257 228 286 88 0 chr9 7249484 7249575 -110613052 - L1MC4 LINE L1 -1339 6703 6605 * 314 136 0 169 chr9 7249581 7249694 -110612933 + L1MC4 LINE L1 7900 8040 -2 204 304 0 0 chr9 7249749 7249805 -110612822 + T-rich Low_complexity Low_complexity 2 57 0 536 140 131 19 chr9 7250183 7250290 -110612337 - MSTC LTR MaLR -309 119 1 234 91 0 0 chr9 7250512 7250545 -110612082 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 324 39 39 chr9 7251275 7251377 -110611250 - L2 LINE L2 -1 3271 3170 761 277 37 16 chr9 7251492 7251734 -110610893 - MIR SINE MIR 0 262 16 1812 144 0 33 chr9 7252496 7252802 -110609825 - AluJo SINE Alu -8 304 9 603 119 83 0 chr9 7253125 7253234 -110609393 - MLT2B1 LTR ERVL 0 520 403 903 121 0 0 chr9 7253235 7253359 -110609268 - AluJb SINE Alu -188 124 1 190 297 0 62 chr9 7257343 7257407 -110605220 - L2 LINE L2 -34 3238 3179 372 175 62 0 chr9 7257837 7257917 -110604710 - L1M4 LINE L1 -852 5294 5210 2629 189 32 15 chr9 7257928 7258592 -110604035 - L1ME LINE L1 -369 5797 5123 23 0 0 0 chr9 7258727 7258750 -110603877 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 7259810 7259833 -110602794 + AT_rich Low_complexity Low_complexity 1 23 0 1849 163 0 16 chr9 7260274 7260580 -110602047 + AluJo SINE Alu 1 301 -11 1756 183 0 10 chr9 7260731 7261037 -110601590 + AluJb SINE Alu 1 303 -9 1667 147 0 11 chr9 7261543 7261808 -110600819 - MER50 LTR ERV1 -38 696 435 1319 129 26 35 chr9 7261805 7262037 -110600590 - MER50 LTR ERV1 -504 230 1 * 219 158 35 18 chr9 7262059 7262116 -110600511 + T-rich Low_complexity Low_complexity 1 58 0 374 379 8 16 chr9 7262422 7262546 -110600081 - L2 LINE L2 -21 3251 3129 753 298 109 33 chr9 7262727 7262921 -110599706 - L2 LINE L2 -457 2857 2679 1286 126 10 20 chr9 7262921 7263089 -110599538 + MER107 DNA MER1_type 1 168 -29 182 36 0 36 chr9 7263089 7263117 -110599510 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1286 126 10 20 chr9 7263117 7263147 -110599480 + MER107 DNA MER1_type 168 197 0 753 298 109 33 chr9 7263147 7263439 -110599188 - L2 LINE L2 -635 2679 2334 23 0 0 0 chr9 7263837 7263860 -110598767 + AT_rich Low_complexity Low_complexity 1 23 0 706 169 81 16 chr9 7264030 7264154 -110598473 - FLAM_C SINE Alu -10 133 2 189 0 0 0 chr9 7264595 7264616 -110598011 + (TG)n Simple_repeat Simple_repeat 2 22 0 686 152 0 139 chr9 7265848 7266013 -110596614 - FLAM_C SINE Alu 0 143 2 241 258 135 0 chr9 7266211 7266300 -110596327 + MIR3 SINE MIR 85 185 -23 675 310 82 71 chr9 7267257 7267792 -110594835 - L3 LINE CR1 -50 1527 987 878 174 192 11 chr9 7267805 7268081 -110594546 + L1ME4a LINE L1 5793 6118 -3 415 237 144 37 chr9 7269448 7269567 -110593060 + MIR SINE MIR 17 122 -140 5165 175 108 125 chr9 7269567 7271348 -110591279 - MER52A LTR ERV1 0 1755 4 415 237 144 37 chr9 7271348 7271433 -110591194 + MIR SINE MIR 122 238 -24 194 247 130 0 chr9 7272258 7272335 -110590292 + L2 LINE L2 3162 3248 -24 795 161 0 0 chr9 7272770 7272894 -110589733 + FLAM_C SINE Alu 1 124 -9 1407 150 80 36 chr9 7273151 7273425 -110589202 + AluJo SINE Alu 1 286 -26 699 269 50 17 chr9 7273887 7274184 -110588443 + L1ME4a LINE L1 5599 5905 -216 1508 142 46 7 chr9 7274187 7274469 -110588158 + L1MB3 LINE L1 5891 6183 0 894 110 7 29 chr9 7274846 7274982 -110587645 - FLAM_C SINE Alu 0 133 1 232 333 39 16 chr9 7275137 7275266 -110587361 - MARNA DNA Mariner -178 408 277 456 244 59 7 chr9 7275429 7275564 -110587063 - LTR67 LTR ERVL -8 549 408 180 0 0 0 chr9 7275684 7275704 -110586923 + (CTG)n Simple_repeat Simple_repeat 1 20 0 37874 84 14 8 chr9 7277101 7283202 -110579425 - L1PA6 LINE L1 -2 6152 13 647 222 7 15 chr9 7284890 7285025 -110577602 - MER119 DNA MER1_type -1 582 449 396 272 76 0 chr9 7285043 7285135 -110577492 - MER119 DNA MER1_type -478 105 7 309 198 35 78 chr9 7286493 7286609 -110576018 + MIR SINE MIR 102 212 -50 240 86 0 0 chr9 7288182 7288217 -110574410 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr9 7288397 7288430 -110574197 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr9 7288885 7288924 -110573703 + AT_rich Low_complexity Low_complexity 1 39 0 501 235 9 17 chr9 7288984 7289099 -110573528 - MER81 DNA DNA 0 114 1 2217 111 0 19 chr9 7289641 7289957 -110572670 + AluSq SINE Alu 1 310 -3 1458 161 96 38 chr9 7290524 7290815 -110571812 + AluJb SINE Alu 1 308 -4 2280 103 7 0 chr9 7291073 7291374 -110571253 - AluSc SINE Alu -6 303 1 1385 114 31 22 chr9 7292561 7292789 -110569838 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr9 7293570 7293594 -110569033 + AT_rich Low_complexity Low_complexity 1 24 0 200 344 33 0 chr9 7294756 7294846 -110567781 - L2 LINE L2 -6 3266 3174 234 280 122 0 chr9 7297682 7297789 -110564838 - MIR3 SINE MIR -19 189 70 227 176 221 15 chr9 7297844 7297912 -110564715 - MLT1G1 LTR MaLR -36 559 478 279 306 68 27 chr9 7299697 7299844 -110562783 - MIR SINE MIR -13 249 97 1088 167 63 9 chr9 7300014 7300236 -110562391 + L1ME1 LINE L1 5928 6161 -5 249 324 69 6 chr9 7300349 7300522 -110562105 - L2 LINE L2 -1153 2161 1978 1051 284 39 56 chr9 7300663 7301075 -110561552 - L1MDa LINE L1 -6079 461 57 2214 117 10 0 chr9 7301102 7301411 -110561216 - AluSx SINE Alu 0 312 1 2083 184 86 4 chr9 7301812 7302278 -110560349 + MLT1D LTR MaLR 2 505 0 503 196 41 0 chr9 7302467 7302578 -110560049 - L1MB7 LINE L1 0 6174 6055 1533 181 83 0 chr9 7302633 7302909 -110559718 - AluJb SINE Alu -13 299 1 521 180 54 31 chr9 7303550 7303788 -110558839 + MER46C DNA MER2_type 61 338 0 2347 187 20 47 chr9 7303950 7304092 -110558535 + MLT2B2 LTR ERVL 1 145 -370 2728 98 8 0 chr9 7304092 7304451 -110558176 + THE1B LTR MaLR 3 364 0 2347 187 20 47 chr9 7304451 7304801 -110557826 + MLT2B2 LTR ERVL 145 480 -35 248 224 0 0 chr9 7304832 7304890 -110557737 + MLT2B2 LTR ERVL 458 515 0 6422 64 0 3 chr9 7304909 7305691 -110556936 + LTR17 LTR ERV1 1 780 0 312 370 60 10 chr9 7306873 7307073 -110555554 + MIR SINE MIR 21 230 -32 216 0 0 0 chr9 7308737 7308761 -110553866 + (T)n Simple_repeat Simple_repeat 1 24 0 185 283 98 22 chr9 7308831 7308923 -110553704 + L2 LINE L2 3209 3307 -6 595 234 13 19 chr9 7308926 7309080 -110553547 + MIR SINE MIR 88 240 -22 187 220 20 0 chr9 7309111 7309161 -110553466 + L2 LINE L2 3263 3313 0 1606 159 58 18 chr9 7309214 7309491 -110553136 - AluJo SINE Alu -16 296 9 2377 105 48 20 chr9 7309682 7310035 -110552592 - THE1B LTR MaLR -1 363 1 202 292 6 123 chr9 7310907 7310970 -110551657 + MER5B DNA MER1_type 3 72 -106 2237 112 3 0 chr9 7310970 7311273 -110551354 + AluSq SINE Alu 1 304 -9 202 292 6 123 chr9 7311273 7311380 -110551247 + MER5B DNA MER1_type 72 153 -25 306 269 129 65 chr9 7311498 7311684 -110550943 + MIR SINE MIR 20 217 -45 321 292 29 22 chr9 7311929 7312066 -110550561 + HAL1 LINE L1 1 138 -2369 677 228 61 6 chr9 7312095 7312275 -110550352 + HAL1 LINE L1 1562 1751 -756 777 340 54 4 chr9 7312301 7312580 -110550047 + LTR33 LTR ERVL 48 340 -181 1295 239 49 72 chr9 7312600 7313170 -110549457 + HAL1 LINE L1 1836 2392 -115 27 29 0 0 chr9 7314471 7314505 -110548122 + AT_rich Low_complexity Low_complexity 1 34 0 2117 134 0 17 chr9 7314505 7314804 -110547823 - AluSx SINE Alu -16 296 3 268 319 141 16 chr9 7315212 7315397 -110547230 - MIR SINE MIR -8 254 47 681 98 0 0 chr9 7316510 7316622 -110546005 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 1275 84 0 0 chr9 7316636 7316923 -110545704 + (TCCA)n Simple_repeat Simple_repeat 1 287 0 288 354 9 0 chr9 7316925 7317038 -110545589 - L2 LINE L2 -14 3299 3186 406 253 0 0 chr9 7318057 7318156 -110544471 + L1MC/D LINE L1 5706 5804 -2004 2217 282 131 25 chr9 7318260 7319704 -110542923 + L2 LINE L2 1481 3084 -229 382 281 44 0 chr9 7319742 7319856 -110542771 - MER91C DNA MER1_type -17 123 5 1065 52 40 12 chr9 7319897 7320070 -110542557 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2112 132 7 0 chr9 7320072 7320368 -110542259 - AluSx SINE Alu -14 298 1 323 290 145 0 chr9 7320372 7320503 -110542124 + L2 LINE L2 3164 3313 0 307 303 13 26 chr9 7320525 7320680 -110541947 + HAL1b LINE L1 1189 1341 -7 471 269 140 5 chr9 7320695 7320888 -110541739 + MIR SINE MIR 30 248 -14 213 120 60 0 chr9 7320908 7320958 -110541669 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1793 173 3 3 chr9 7321770 7322054 -110540573 + AluJo SINE Alu 5 288 -24 849 282 50 31 chr9 7324295 7324618 -110538009 + HAL1 LINE L1 11 339 -2168 5085 128 11 7 chr9 7324997 7325742 -110536885 - L1MC1 LINE L1 -1 6332 5585 2081 100 0 4 chr9 7325930 7326201 -110536426 + AluSq SINE Alu 5 274 -39 911 228 46 32 chr9 7326263 7326482 -110536145 - MER58A DNA MER1_type -2 222 1 663 283 79 18 chr9 7326567 7326846 -110535781 - MLT1K LTR MaLR -2 586 291 732 154 30 124 chr9 7326990 7327191 -110535436 + MER5A DNA MER1_type 3 184 -5 266 268 82 10 chr9 7327209 7327306 -110535321 + L2 LINE L2 3121 3224 -48 1597 164 98 14 chr9 7328045 7328331 -110534296 - AluSx SINE Alu -2 310 1 1069 199 92 5 chr9 7328741 7328947 -110533680 + MER58A DNA MER1_type 1 224 0 667 152 0 9 chr9 7329065 7329170 -110533457 - AluJ SINE Alu -19 293 190 895 150 0 0 chr9 7329177 7329310 -110533317 - AluJ SINE Alu -179 133 1 448 199 87 132 chr9 7329317 7329762 -110532865 - L1MC4 LINE L1 -1 8041 7549 271 270 22 31 chr9 7332297 7332435 -110530192 - MLT1J LTR MaLR -339 172 110 267 200 125 12 chr9 7332430 7332510 -110530117 - MLT1L LTR MaLR -524 91 3 * 270 201 97 119 chr9 7333279 7333413 -110529214 - MER5A DNA MER1_type -30 159 29 234 278 40 71 chr9 7333455 7333581 -110529046 - MIR SINE MIR -19 243 122 248 75 0 25 chr9 7333989 7334029 -110528598 + (GA)n Simple_repeat Simple_repeat 2 40 0 601 270 56 19 chr9 7334390 7334603 -110528024 - MIR SINE MIR -26 236 17 1554 147 13 63 chr9 7335641 7335941 -110526686 - AluJo SINE Alu -23 289 5 652 262 143 91 chr9 7336449 7336975 -110525652 + LTR67 LTR ERVL 2 554 -3 680 196 0 0 chr9 7337024 7337126 -110525501 + FLAM_C SINE Alu 17 118 -25 270 0 0 0 chr9 7337130 7337160 -110525467 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2202 116 10 0 chr9 7337487 7337780 -110524847 - AluSx SINE Alu -16 296 1 34329 94 55 10 chr9 7338006 7343879 -110518748 + L1PA6 LINE L1 11 6153 -1 230 360 11 73 chr9 7343902 7344163 -110518464 + L2 LINE L2 2942 3186 -86 474 236 90 36 chr9 7344588 7344784 -110517843 + MIR3 SINE MIR 18 216 -46 250 291 13 0 chr9 7344968 7345047 -110517580 + MLT1L LTR MaLR 1 80 -535 240 111 0 0 chr9 7345286 7345322 -110517305 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 219 369 12 31 chr9 7345322 7345482 -110517145 + L2 LINE L2 2948 3104 -168 413 145 13 0 chr9 7345484 7345560 -110517067 + CT-rich Low_complexity Low_complexity 4 80 0 234 311 0 0 chr9 7346264 7346325 -110516302 - L2 LINE L2 -9 3263 3203 26 0 0 0 chr9 7346332 7346358 -110516269 + AT_rich Low_complexity Low_complexity 1 26 0 856 296 88 21 chr9 7346395 7346868 -110515759 + MLT2F LTR ERVL 1 434 -229 491 237 22 22 chr9 7346886 7347025 -110515602 + MLT2E LTR ERVL 475 613 -15 255 363 4 35 chr9 7347057 7347149 -110515478 + MLT1-int LTR MaLR 292 385 -986 2657 118 6 6 chr9 7347149 7347513 -110515114 - THE1B LTR MaLR 0 364 1 255 363 4 35 chr9 7347513 7347679 -110514948 + MLT1-int LTR MaLR 385 542 -829 24 0 0 0 chr9 7348081 7348105 -110514522 + AT_rich Low_complexity Low_complexity 1 24 0 760 333 68 12 chr9 7348338 7348677 -110513950 + LTR16C LTR ERVL 133 490 -1 205 340 21 0 chr9 7348786 7348880 -110513747 - L2 LINE L2 -305 2967 2872 * 259 333 29 0 chr9 7348871 7348940 -110513687 - MER91A DNA MER1_type -7 189 119 404 310 26 0 chr9 7348986 7349102 -110513525 - MER91A DNA MER1_type -40 156 38 273 263 38 0 chr9 7349504 7349584 -110513043 + MLT1J2 LTR MaLR 67 149 -301 227 196 0 20 chr9 7350256 7350307 -110512320 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 85 0 0 chr9 7350911 7350970 -110511657 + (TG)n Simple_repeat Simple_repeat 1 59 0 265 268 31 70 chr9 7351084 7351292 -110511335 - MIR SINE MIR 0 262 8 755 224 56 28 chr9 7351842 7352021 -110510606 - MIR SINE MIR -66 196 13 1639 177 24 3 chr9 7352100 7352394 -110510233 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 7352397 7352422 -110510205 + (CAA)n Simple_repeat Simple_repeat 3 27 0 295 299 120 33 chr9 7353025 7353209 -110509418 - MIR SINE MIR -6 256 57 636 167 0 0 chr9 7353510 7353600 -110509027 - AluJ/FLAM SINE Alu -221 91 2 4640 169 63 3 chr9 7353967 7354854 -110507773 + L1MD1 LINE L1 5292 6231 -11 274 231 0 0 chr9 7354856 7354921 -110507706 + MARNA DNA Mariner 327 391 -195 316 226 0 0 chr9 7355135 7355197 -110507430 - MER21B LTR ERV1 -144 719 658 * 3016 99 39 27 chr9 7355191 7355677 -110506950 - LTR21A LTR ERV1 -13 492 1 1393 188 82 36 chr9 7355679 7355983 -110506644 - MER21B LTR ERV1 -202 661 344 434 194 155 0 chr9 7356045 7356148 -110506479 - MER21B LTR ERV1 -647 216 98 376 127 228 0 chr9 7356173 7356252 -110506375 - FRAM SINE Alu -2 164 68 563 176 0 0 chr9 7356276 7356361 -110506266 - FRAM/FAM SINE Alu -92 84 1 397 210 25 0 chr9 7356380 7356461 -110506166 - MER21B LTR ERV1 -760 103 21 366 309 9 9 chr9 7356624 7356734 -110505893 - MIR SINE MIR -60 148 39 757 271 65 0 chr9 7357473 7357687 -110504940 - MIR SINE MIR -13 249 22 1984 123 3 49 chr9 7357688 7358013 -110504614 - AluJb SINE Alu -2 310 1 265 242 61 53 chr9 7359200 7359332 -110503295 - L2 LINE L2 -23 3290 3158 2446 178 48 85 chr9 7359400 7359939 -110502688 + LTR40a LTR ERVL 1 519 0 306 280 67 16 chr9 7361114 7361307 -110501320 + L1MEd LINE L1 638 840 -5279 1006 196 6 0 chr9 7361365 7361538 -110501089 + L1MDa LINE L1 19 192 -6348 * 2872 181 120 107 chr9 7361536 7361836 -110500791 + L1MDa LINE L1 807 1102 -5438 1725 189 3 7 chr9 7361836 7362137 -110500490 + AluJo SINE Alu 1 300 -12 2872 181 120 107 chr9 7362137 7362852 -110499775 + L1MDa LINE L1 1102 1835 -4705 1077 154 66 0 chr9 7363287 7363469 -110499158 - AluSc SINE Alu -2 307 114 2789 129 35 2 chr9 7363632 7364057 -110498570 + Tigger2 DNA MER2_type 2280 2718 0 207 195 0 24 chr9 7364338 7364364 -110498263 + CT-rich Low_complexity Low_complexity 2 28 -13 2201 108 3 10 chr9 7364364 7364678 -110497949 - AluSx SINE Alu 0 312 1 207 195 0 24 chr9 7364678 7364692 -110497935 + CT-rich Low_complexity Low_complexity 28 41 0 276 261 165 17 chr9 7365003 7365118 -110497509 + MIR3 SINE MIR 13 144 -64 379 299 25 80 chr9 7365175 7365376 -110497251 - MLT1J LTR MaLR -104 407 218 246 65 0 0 chr9 7365405 7365436 -110497191 - MLT1J2 LTR MaLR -356 94 64 257 235 20 0 chr9 7366915 7366966 -110495661 - MLT1K LTR MaLR 0 588 537 2038 141 76 17 chr9 7367746 7368100 -110494527 - THE1C LTR MaLR 0 375 1 242 314 157 0 chr9 7368378 7368499 -110494128 + MIR SINE MIR 11 150 -112 345 229 41 74 chr9 7368776 7368810 -110493817 + MIR SINE MIR 141 175 -87 536 313 44 0 chr9 7368810 7368992 -110493635 + MER91B DNA MER1_type 1 190 0 345 229 41 74 chr9 7368992 7369079 -110493548 + MIR SINE MIR 175 258 -4 256 300 43 21 chr9 7369239 7369379 -110493248 - L1MC4 LINE L1 -15 8027 7885 3362 210 26 41 chr9 7369519 7369573 -110493054 - L1ME2 LINE L1 -10 6088 6035 2286 105 0 0 chr9 7369573 7369868 -110492759 + AluSx SINE Alu 1 295 -17 3362 210 26 41 chr9 7369868 7369937 -110492690 - L1ME2 LINE L1 -63 6035 5966 2232 112 3 3 chr9 7369937 7370249 -110492378 + AluSx SINE Alu 1 312 0 3362 210 26 41 chr9 7370249 7370972 -110491655 - L1ME2 LINE L1 -132 5966 5254 1019 222 48 4 chr9 7370969 7371221 -110491406 - L1MD3 LINE L1 -2 7993 7731 * 1755 145 91 0 chr9 7371230 7371506 -110491121 - AluSx SINE Alu -11 301 1 4419 243 91 52 chr9 7371542 7373520 -110489107 - L1ME2 LINE L1 -830 5250 3207 5894 138 11 18 chr9 7373536 7374435 -110488192 - L1MC1 LINE L1 0 6333 5438 1875 54 0 5 chr9 7374435 7374683 -110487944 - AluY SINE Alu 0 319 73 5894 138 11 18 chr9 7374683 7374737 -110487890 - L1MC1 LINE L1 -895 5438 5385 7050 52 0 72 chr9 7374737 7375919 -110486708 - L1PA5 LINE L1 0 6154 5081 9320 223 42 11 chr9 7375927 7376960 -110485667 - L1MC1 LINE L1 -752 5394 4394 2070 121 0 13 chr9 7376960 7377258 -110485369 - AluSc SINE Alu -15 294 1 9320 223 42 11 chr9 7377258 7378615 -110484012 - L1MC1 LINE L1 -1752 4394 2930 277 229 57 0 chr9 7378664 7378769 -110483858 - L1ME2 LINE L1 -2989 3091 2981 1053 277 88 71 chr9 7378770 7379224 -110483403 + MLT1G LTR MaLR 1 460 -135 408 208 25 67 chr9 7379289 7379409 -110483218 - L1ME2 LINE L1 -5859 211 97 2178 111 0 3 chr9 7379869 7380157 -110482470 - AluSx SINE Alu -15 297 11 288 0 0 0 chr9 7380708 7380740 -110481887 + (TG)n Simple_repeat Simple_repeat 2 33 0 361 277 43 116 chr9 7381293 7381622 -110481005 - L2 LINE L2 -2 3270 2966 1090 181 48 9 chr9 7383074 7383284 -110479343 - L1PB3 LINE L1 -1 6153 5936 402 261 96 102 chr9 7383477 7383811 -110478816 + MLT1K LTR MaLR 10 341 -247 241 219 37 0 chr9 7383924 7384006 -110478621 + C-rich Low_complexity Low_complexity 3 87 0 649 341 60 30 chr9 7384011 7384664 -110477963 - L2 LINE L2 -5 3308 2628 370 278 35 0 chr9 7384764 7384879 -110477748 - MLT1L LTR MaLR -129 486 368 234 211 53 0 chr9 7385737 7385794 -110476833 + MLT1K LTR MaLR 522 581 -7 1801 191 63 26 chr9 7386631 7387013 -110475614 + MSTD LTR MaLR 1 396 0 180 111 0 0 chr9 7387156 7387183 -110475444 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1754 183 26 7 chr9 7387585 7387891 -110474736 + AluJb SINE Alu 1 312 0 300 275 42 25 chr9 7387925 7388045 -110474582 + MIR SINE MIR 60 181 -81 217 296 26 61 chr9 7388117 7388232 -110474395 - L3 LINE CR1 -206 1371 1261 1354 177 9 79 chr9 7388238 7388554 -110474073 - L1MB5 LINE L1 0 6174 5881 271 208 218 20 chr9 7389816 7389917 -110472710 - MLT1J LTR MaLR -57 454 334 809 247 147 36 chr9 7389998 7390386 -110472241 - MLT1J LTR MaLR -74 437 7 218 255 59 0 chr9 7390961 7391012 -110471615 + MIR3 SINE MIR 103 156 -52 293 240 165 8 chr9 7393074 7393195 -110469432 + L2 LINE L2 2919 3058 -214 321 125 0 0 chr9 7393498 7393554 -110469073 + (GA)n Simple_repeat Simple_repeat 1 56 0 4671 110 36 7 chr9 7394624 7395342 -110467285 - L1PA16 LINE L1 -11 6155 5417 297 68 0 0 chr9 7395414 7395458 -110467169 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 233 322 144 8 chr9 7396675 7396793 -110465834 + L2 LINE L2 3138 3271 -1 223 319 55 22 chr9 7397719 7397810 -110464817 - MIR SINE MIR -70 192 99 373 289 72 41 chr9 7398768 7398919 -110463708 - MLT1L LTR MaLR 0 615 470 2096 145 0 6 chr9 7398919 7399230 -110463397 - AluSx SINE Alu -3 309 1 373 289 72 41 chr9 7399230 7399470 -110463157 - MLT1L LTR MaLR -145 470 110 37 0 0 0 chr9 7399492 7399529 -110463098 + AT_rich Low_complexity Low_complexity 1 37 0 39594 83 6 7 chr9 7399529 7405685 -110456942 - L1PA6 LINE L1 0 6154 5 603 77 0 0 chr9 7406808 7406886 -110455741 - MADE1 DNA Mariner 0 80 3 734 235 15 67 chr9 7407789 7408057 -110454570 - L1MC4a LINE L1 -1878 5930 5677 204 125 0 0 chr9 7408070 7408102 -110454525 + (GA)n Simple_repeat Simple_repeat 1 32 0 207 293 61 0 chr9 7408144 7408226 -110454401 + L3b LINE CR1 1251 1337 -246 680 172 19 51 chr9 7410670 7410827 -110451800 - MIR SINE MIR -10 252 101 195 42 0 0 chr9 7411184 7411208 -110451419 + (GA)n Simple_repeat Simple_repeat 2 25 0 1056 295 157 5 chr9 7411711 7412152 -110450475 - MLT1L LTR MaLR -22 593 86 507 275 8 0 chr9 7412362 7412493 -110450134 + L1MC4a LINE L1 5775 5906 -1902 2502 59 0 31 chr9 7412630 7412951 -110449676 + AluY SINE Alu 1 311 0 383 285 145 5 chr9 7413173 7413366 -110449261 + L1MC4a LINE L1 6531 6750 -1058 255 317 0 12 chr9 7413467 7413549 -110449078 - MIR SINE MIR -179 83 3 428 204 41 20 chr9 7413726 7413824 -110448803 - MIR3 SINE MIR -15 193 94 387 316 8 0 chr9 7414796 7414929 -110447698 + MIR SINE MIR 58 191 -71 1724 99 4 21 chr9 7414983 7415216 -110447411 - AluSp SINE Alu -11 302 74 200 132 0 26 chr9 7416125 7416163 -110446464 - MIR SINE MIR -109 153 117 511 250 8 0 chr9 7417039 7417171 -110445456 + L1MB7 LINE L1 6040 6172 -12 2521 76 0 0 chr9 7417925 7418229 -110444398 + AluY SINE Alu 1 304 -7 670 167 67 40 chr9 7418646 7418796 -110443831 + MIR SINE MIR 109 262 0 703 263 123 4 chr9 7419617 7419845 -110442782 - MIR SINE MIR 0 262 8 185 323 56 71 chr9 7420107 7420305 -110442322 - MIR SINE MIR -44 218 24 405 0 0 0 chr9 7421295 7421340 -110441287 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 213 155 32 chr9 7422793 7422948 -110439679 - MIR3 SINE MIR -26 182 9 479 227 123 19 chr9 7423391 7423545 -110439082 - MIR SINE MIR -91 171 2 540 217 217 11 chr9 7424734 7425047 -110437580 + MLT1J LTR MaLR 82 488 -23 185 139 0 28 chr9 7425438 7425474 -110437153 - MIR SINE MIR -153 55 21 720 215 70 0 chr9 7426283 7426441 -110436186 - MER45A DNA AcHobo -1 177 9 3185 154 11 71 chr9 7426515 7426652 -110435975 - MER6A DNA MER2_type -260 605 461 1805 143 68 4 chr9 7426652 7426932 -110435695 + AluJo SINE Alu 1 298 -14 3185 154 11 71 chr9 7426932 7427438 -110435189 - MER6A DNA MER2_type -404 461 1 476 160 0 0 chr9 7427442 7427517 -110435110 + MSTD LTR MaLR 1 75 -321 7236 221 82 19 chr9 7477517 7477785 -110384842 - L1M2 LINE L1 -4523 2686 2436 2083 124 3 0 chr9 7477785 7478096 -110384531 - AluSp SINE Alu 0 312 1 7236 221 82 19 chr9 7478096 7480296 -110382331 - L1M2 LINE L1 -4773 2436 1 199 283 67 0 chr9 7480453 7480513 -110382114 + L2 LINE L2 2191 2254 -1060 740 304 35 4 chr9 7480788 7481015 -110381612 + MIR SINE MIR 25 258 -4 304 286 8 40 chr9 7481451 7481577 -110381050 + GA-rich Low_complexity Low_complexity 3 124 0 377 247 62 84 chr9 7482322 7482500 -110380127 + HAL1 LINE L1 22 195 -2312 287 330 42 62 chr9 7482897 7483203 -110379424 + HAL1 LINE L1 706 1005 -1502 265 342 17 17 chr9 7484148 7484268 -110378359 + MIR SINE MIR 23 142 -120 2866 221 100 12 chr9 7486210 7486988 -110375639 - L1ME1 LINE L1 -3 6163 5317 241 235 15 15 chr9 7487751 7487819 -110374808 + MLT1K LTR MaLR 179 246 -342 2064 160 0 0 chr9 7488156 7488462 -110374165 + AluJo SINE Alu 1 306 -6 232 333 8 79 chr9 7488680 7488806 -110373821 - L3 LINE CR1 -3 1574 1458 389 355 33 16 chr9 7489852 7490094 -110372533 - MIR SINE MIR -14 248 3 404 258 116 37 chr9 7491212 7491402 -110371225 + MIR SINE MIR 56 260 -2 2111 221 61 17 chr9 7492296 7492770 -110369857 + MLT1F LTR MaLR 1 495 -47 2060 221 31 48 chr9 7492771 7493292 -110369335 - LTR40a LTR ERVL 0 519 8 262 235 0 0 chr9 7493298 7493349 -110369278 + MLT1F LTR MaLR 492 542 0 351 276 95 0 chr9 7494368 7494484 -110368143 + MIR SINE MIR 124 250 -12 555 163 0 0 chr9 7494489 7494581 -110368046 - AluJ/FRAM SINE Alu 0 312 221 1521 263 50 19 chr9 7495234 7495710 -110366917 + LTR16C LTR ERVL 1 491 0 345 329 96 0 chr9 7495856 7496002 -110366625 - MIR SINE MIR -66 196 37 1016 251 140 40 chr9 7496093 7496664 -110365963 + L2 LINE L2 2698 3308 -5 329 243 162 0 chr9 7497230 7497366 -110365261 - L1ME4a LINE L1 -3 6118 5961 1046 110 6 0 chr9 7497447 7497611 -110365016 + (TTTCC)n Simple_repeat Simple_repeat 2 166 0 1708 169 22 0 chr9 7497611 7497884 -110364743 - AluJb SINE Alu -33 279 1 272 275 11 0 chr9 7498026 7498117 -110364510 - HsTC2 DNA Tc2 -1007 891 800 482 134 0 0 chr9 7498153 7498220 -110364407 + Tigger2 DNA MER2_type 1 67 -2651 * 570 143 0 10 chr9 7498206 7498304 -110364323 + Tigger2 DNA MER2_type 2267 2363 -355 226 103 0 0 chr9 7498301 7498330 -110364297 + Tigger2 DNA MER2_type 2690 2718 0 * 648 260 87 5 chr9 7498334 7498542 -110364085 - HsTC2 DNA Tc2 -1138 760 536 336 276 33 59 chr9 7498544 7498696 -110363931 - HsTC2 DNA Tc2 -1750 148 1 21 0 0 0 chr9 7498845 7498866 -110363761 + AT_rich Low_complexity Low_complexity 1 21 0 510 271 25 30 chr9 7499613 7499748 -110362879 - L1ME4a LINE L1 -162 5959 5824 2153 132 47 44 chr9 7499748 7500111 -110362516 + THE1B LTR MaLR 1 364 0 510 271 25 30 chr9 7500111 7500174 -110362453 - L1ME4a LINE L1 -297 5824 5762 2451 68 0 0 chr9 7500663 7500957 -110361670 + AluY SINE Alu 1 294 -17 381 197 13 0 chr9 7501766 7501842 -110360785 + MER58 DNA MER1_type 2343 2419 -1 234 258 33 67 chr9 7502650 7502770 -110359857 - L1MC4 LINE L1 -116 7926 7811 295 271 21 21 chr9 7502899 7502995 -110359632 - L1MC4 LINE L1 -368 7674 7579 2531 230 17 35 chr9 7503013 7503648 -110358979 - L1ME1 LINE L1 -4 6162 5539 253 220 68 0 chr9 7503691 7503750 -110358877 - L1ME LINE L1 -6002 68 6 234 307 53 0 chr9 7503823 7503898 -110358729 - MIR3 SINE MIR -14 194 116 346 236 42 0 chr9 7503921 7503993 -110358634 - L2 LINE L2 -4 3268 3194 294 254 0 0 chr9 7505392 7505459 -110357168 + MIR3 SINE MIR 137 203 -5 27 49 0 0 chr9 7506148 7506189 -110356438 + AT_rich Low_complexity Low_complexity 1 41 0 632 255 21 32 chr9 7506378 7506566 -110356061 + MIR SINE MIR 2 187 -75 23 33 0 0 chr9 7508900 7508930 -110353697 + AT_rich Low_complexity Low_complexity 1 30 0 431 193 0 23 chr9 7509875 7509963 -110352664 + MIR SINE MIR 174 259 -3 21 57 0 0 chr9 7510135 7510170 -110352457 + AT_rich Low_complexity Low_complexity 1 35 0 182 306 26 119 chr9 7510448 7510641 -110351986 + MIR SINE MIR 18 192 -70 329 314 0 8 chr9 7511648 7511769 -110350858 - LTR67 LTR ERVL 0 557 438 2483 132 16 65 chr9 7511821 7512267 -110350360 + Tigger2a DNA MER2_type 11 434 0 299 243 40 0 chr9 7512319 7512393 -110350234 - LTR67 LTR ERVL -478 79 3 2625 227 116 136 chr9 7512857 7513693 -110348934 - HAL1 LINE L1 -93 2414 1563 764 160 82 82 chr9 7513693 7513716 -110348911 + MER58C DNA MER1_type 3 25 -2395 2669 167 22 31 chr9 7513716 7514206 -110348421 - MER66B LTR ERV1 0 486 1 764 160 82 82 chr9 7514206 7514273 -110348354 + MER58C DNA MER1_type 25 91 -2329 483 18 0 0 chr9 7514273 7514329 -110348298 + (CCAA)n Simple_repeat Simple_repeat 4 59 0 764 160 82 82 chr9 7514329 7514443 -110348184 + MER58C DNA MER1_type 90 208 -7 2625 227 116 136 chr9 7514443 7514895 -110347732 - HAL1 LINE L1 -944 1563 1103 189 0 0 0 chr9 7514895 7514916 -110347711 + (TA)n Simple_repeat Simple_repeat 1 21 0 2625 227 116 136 chr9 7514916 7515345 -110347282 - HAL1 LINE L1 -1404 1103 530 1210 182 9 18 chr9 7515359 7515579 -110347048 - AluJo SINE Alu -22 290 73 241 215 169 0 chr9 7515582 7515647 -110346980 - HAL1 LINE L1 -1966 541 466 1058 137 12 6 chr9 7515648 7515816 -110346811 - FRAM SINE Alu -7 169 1 908 243 62 110 chr9 7515816 7516298 -110346329 - HAL1 LINE L1 -2033 474 16 279 259 16 77 chr9 7516638 7516793 -110345834 - L1ME LINE L1 -516 5605 5465 1317 282 44 12 chr9 7517512 7517994 -110344633 - Tigger8 DNA MER2_type -13 653 157 1725 171 0 51 chr9 7518616 7518932 -110343695 + AluJb SINE Alu 1 300 -12 1124 151 27 28 chr9 7521845 7522063 -110340564 - L1PB1 LINE L1 -13 6153 5945 1433 122 10 0 chr9 7523081 7523286 -110339341 - L1PB1 LINE L1 0 6151 5945 258 308 65 19 chr9 7523306 7523413 -110339214 + MIR SINE MIR 61 172 -90 439 259 109 23 chr9 7523662 7523836 -110338791 - LTR67 LTR ERVL -13 544 356 305 325 19 57 chr9 7523987 7524144 -110338483 - LTR67 LTR ERVL -355 202 52 210 277 96 0 chr9 7524402 7524496 -110338131 - MIR SINE MIR -80 182 80 475 316 124 10 chr9 7524548 7524741 -110337886 + MIR SINE MIR 7 221 -41 232 200 12 129 chr9 7526311 7526365 -110336262 + MIR SINE MIR 105 147 -115 2262 77 7 0 chr9 7526365 7526651 -110335976 - AluSp SINE Alu -25 288 1 232 200 12 129 chr9 7526651 7526681 -110335946 + MIR SINE MIR 147 179 -83 2272 136 33 25 chr9 7526760 7527121 -110335506 + THE1B LTR MaLR 1 364 0 2522 62 0 7 chr9 7530247 7530556 -110332071 + AluY SINE Alu 1 307 -4 235 214 0 0 chr9 7531148 7531190 -110331437 + L2 LINE L2 3228 3269 -3 1073 90 8 0 chr9 7531798 7531932 -110330695 + AluSq/x SINE Alu 1 135 -178 1827 161 3 3 chr9 7531933 7532224 -110330403 + AluSx SINE Alu 1 291 -21 2683 162 54 35 chr9 7532376 7532951 -110329676 + L1MA7 LINE L1 5607 6192 -99 972 169 19 5 chr9 7533073 7533280 -110329347 + L1MA7 LINE L1 6080 6289 -2 233 342 149 0 chr9 7534131 7534245 -110328382 + MIR3 SINE MIR 15 145 -63 242 283 54 0 chr9 7534819 7534911 -110327716 + MIR SINE MIR 96 192 -70 214 216 27 0 chr9 7535290 7535364 -110327263 + GA-rich Low_complexity Low_complexity 2 77 0 250 239 30 0 chr9 7536650 7536717 -110325910 + (TA)n Simple_repeat Simple_repeat 2 70 0 2691 26 7 0 chr9 7536782 7537090 -110325537 + AluY SINE Alu 1 310 -1 1983 161 70 6 chr9 7538158 7538500 -110324127 + MLT1A1 LTR MaLR 1 364 -1 728 218 18 41 chr9 7538990 7539210 -110323417 + L1MA7 LINE L1 6076 6290 -1 506 296 69 57 chr9 7540585 7540832 -110321795 - MIR SINE MIR -12 250 1 189 205 0 0 chr9 7541572 7541611 -110321016 - MIR SINE MIR -66 196 158 2069 138 3 0 chr9 7542304 7542600 -110320027 + AluSx SINE Alu 3 299 -13 370 227 40 80 chr9 7543348 7543498 -110319129 - L2 LINE L2 -10 3303 3160 839 284 29 0 chr9 7543561 7543765 -110318862 - MER63A DNA MER1_type 0 210 1 25 0 0 0 chr9 7543904 7543929 -110318698 + AT_rich Low_complexity Low_complexity 1 25 0 375 312 55 0 chr9 7544229 7544338 -110318289 - MIR SINE MIR -120 142 28 2800 174 49 8 chr9 7544828 7545356 -110317271 + MER44D DNA MER2_type 1 605 0 317 276 43 17 chr9 7545731 7545847 -110316780 - LTR67 LTR ERVL -10 547 429 1037 186 11 6 chr9 7546885 7547062 -110315565 + MER5B DNA MER1_type 1 178 0 234 0 0 0 chr9 7547159 7547185 -110315442 + (TTA)n Simple_repeat Simple_repeat 2 27 0 471 296 123 0 chr9 7547240 7547419 -110315208 + MIR SINE MIR 49 249 -13 225 266 28 73 chr9 7547486 7547595 -110315032 - MIR SINE MIR -78 184 81 467 230 164 24 chr9 7547892 7548057 -110314570 - MIR3 SINE MIR 0 208 21 258 218 64 0 chr9 7548236 7548314 -110314313 - MLT1H1 LTR MaLR -1 554 507 612 292 82 26 chr9 7548352 7548585 -110314042 - MLT1H1 LTR MaLR -309 246 1 477 292 52 7 chr9 7549372 7549526 -110313101 + MIR SINE MIR 95 255 -7 210 171 0 0 chr9 7549528 7549569 -110313058 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 410 261 113 20 chr9 7550286 7550481 -110312146 + MIR SINE MIR 2 214 -48 476 338 87 14 chr9 7550584 7550803 -110311824 - MIR SINE MIR -8 254 20 198 329 75 80 chr9 7551243 7551456 -110311171 - MIR SINE MIR 0 262 51 234 302 0 0 chr9 7551540 7551603 -110311024 + MER5A DNA MER1_type 51 113 -76 476 281 98 58 chr9 7553545 7553769 -110308858 + MIR SINE MIR 4 236 -26 519 328 6 17 chr9 7555868 7556048 -110306579 - MIR3 SINE MIR -11 197 20 827 214 291 40 chr9 7556596 7556832 -110305795 + Charlie2a DNA MER1_type 2 177 -2685 2024 118 27 3 chr9 7556832 7557128 -110305499 - AluSx SINE Alu -9 303 1 827 214 291 40 chr9 7557128 7557269 -110305358 + Charlie2a DNA MER1_type 177 474 -2388 978 206 25 25 chr9 7557270 7557547 -110305080 + Charlie2a DNA MER1_type 736 1012 -1850 238 224 0 26 chr9 7557602 7557678 -110304949 - L1MC5 LINE L1 -35 7926 7853 2262 98 3 0 chr9 7557699 7557986 -110304641 - AluSp SINE Alu -25 288 1 281 228 35 0 chr9 7558651 7558765 -110303862 + (TA)n Simple_repeat Simple_repeat 2 119 0 283 316 58 26 chr9 7558801 7558997 -110303630 + MIR SINE MIR 58 259 -3 555 254 89 46 chr9 7559395 7559821 -110302806 - MLT1L LTR MaLR -1 614 126 211 254 104 0 chr9 7561509 7561576 -110301051 - MIR SINE MIR -64 198 125 195 289 19 0 chr9 7561587 7561639 -110300988 + L2 LINE L2 3219 3271 -1 2098 171 31 6 chr9 7562169 7562525 -110300102 - MLT1A1 LTR MaLR 0 365 1 357 318 101 16 chr9 7564059 7564248 -110298379 - MIR SINE MIR -6 256 52 2029 136 172 5 chr9 7564407 7564774 -110297853 - MSTA LTR MaLR 0 428 1 1005 180 52 134 chr9 7564887 7565422 -110297205 + MER4A LTR ERV1 1 432 -165 632 209 19 87 chr9 7565407 7565613 -110297014 + MER4C LTR ERV1 273 464 -1 * 201 39 0 0 chr9 7565952 7565978 -110296649 + (TG)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr9 7566249 7566270 -110296357 + (CA)n Simple_repeat Simple_repeat 1 21 0 216 111 0 0 chr9 7567684 7567720 -110294907 + (CA)n Simple_repeat Simple_repeat 1 36 0 1323 261 68 38 chr9 7568083 7568554 -110294073 + LTR16C LTR ERVL 1 485 -6 203 316 52 44 chr9 7568766 7568823 -110293804 + L2 LINE L2 3171 3226 -87 2622 52 7 0 chr9 7568823 7569132 -110293495 - AluY SINE Alu 0 311 1 203 316 52 44 chr9 7569132 7569210 -110293417 + L2 LINE L2 3226 3307 -6 1629 169 96 37 chr9 7570097 7570451 -110292176 + THE1C LTR MaLR 1 375 0 1030 273 101 21 chr9 7571825 7572202 -110290425 - MLT1I LTR MaLR -2 407 1 2559 65 0 0 chr9 7572244 7572553 -110290074 + AluY SINE Alu 3 311 0 382 294 48 14 chr9 7572687 7572863 -110289764 + MIR SINE MIR 42 221 -41 261 244 142 47 chr9 7573460 7573587 -110289040 + Charlie8 DNA MER1_type 87 225 -2192 259 306 102 23 chr9 7573994 7574152 -110288475 - MIR SINE MIR -63 145 1 198 333 0 26 chr9 7574411 7574489 -110288138 + L2 LINE L2 3197 3272 0 359 297 40 14 chr9 7575325 7575601 -110287026 - L1MDb LINE L1 -5023 1921 1639 7806 144 17 6 chr9 7575626 7577833 -110284794 + L1PA14 LINE L1 3923 6149 -12 24 0 0 0 chr9 7577835 7577859 -110284768 + AT_rich Low_complexity Low_complexity 1 24 0 260 219 24 158 chr9 7577935 7578181 -110284446 - L1MDb LINE L1 -5082 1341 1129 658 314 47 38 chr9 7578511 7578963 -110283664 - L1MDb LINE L1 -5944 479 24 248 311 8 0 chr9 7578970 7579089 -110283538 - L1ME LINE L1 -313 5808 5689 373 175 6 108 chr9 7579160 7579317 -110283310 + L1ME3A LINE L1 6006 6148 -22 24 0 0 0 chr9 7579412 7579436 -110283191 + AT_rich Low_complexity Low_complexity 1 24 0 377 331 44 7 chr9 7580692 7580828 -110281799 - MIR3 SINE MIR -23 185 45 1316 192 55 73 chr9 7580892 7581273 -110281354 - MLT1A2 LTR MaLR 0 374 1 5364 129 40 2 chr9 7582058 7583590 -110279037 + L1PA15 LINE L1 4594 6159 -6 2534 74 0 0 chr9 7584030 7584341 -110278286 + AluY SINE Alu 1 311 0 4442 215 115 7 chr9 7584511 7585225 -110277402 - L1PA16 LINE L1 -9 6472 5837 2152 104 27 7 chr9 7585225 7585524 -110277103 - AluSx SINE Alu -7 305 1 4442 215 115 7 chr9 7585524 7586438 -110276189 - L1PA16 LINE L1 -644 5837 4616 * 10440 153 20 20 chr9 7586426 7587753 -110274874 - L1MA3 LINE L1 -2 7722 6397 2518 48 0 10 chr9 7587753 7588065 -110274562 - AluY SINE Alu 0 311 3 10440 153 20 20 chr9 7588065 7589930 -110272697 - L1MA3 LINE L1 -1327 6397 4527 696 129 0 0 chr9 7589946 7590062 -110272565 - L1PA16 LINE L1 -1829 4632 4517 * 4132 129 2 8 chr9 7590060 7590702 -110271925 - L1PA16 LINE L1 -4757 1118 481 1697 167 69 3 chr9 7590706 7591023 -110271604 - L1PA16 LINE L1 -5536 339 2 18627 160 32 24 chr9 7591023 7594645 -110267982 - L1MA3 LINE L1 -3898 3667 16 3039 195 47 1 chr9 7594651 7595329 -110267298 - L1 LINE L1 -1817 4329 3621 11350 191 31 19 chr9 7595329 7598502 -110264125 - L1PA15-16 LINE L1 -3368 3481 716 2163 161 97 11 chr9 7598516 7598970 -110263657 - LTR49 LTR ERV1 -102 493 1 2895 77 41 10 chr9 7599295 7599712 -110262915 - L1PA11 LINE L1 -2 6172 5743 324 261 109 0 chr9 7600262 7600354 -110262273 + MIR SINE MIR 156 257 -5 2773 193 56 59 chr9 7600851 7601580 -110261047 - LTR8A LTR ERV1 0 727 1 345 262 10 48 chr9 7603048 7603151 -110259476 + MIR SINE MIR 9 107 -155 1122 316 118 29 chr9 7603803 7604513 -110258114 + HERVL LTR ERVL 2937 3725 -1929 2809 7 0 0 chr9 7604513 7604817 -110257810 + AluYb8 SINE Alu 1 304 -14 1122 316 118 29 chr9 7604817 7604896 -110257731 + HERVL LTR ERVL 3725 3796 -1858 1233 331 43 50 chr9 7604978 7605971 -110256656 + HERVL LTR ERVL 4050 5035 -729 878 228 34 153 chr9 7606404 7606754 -110255873 + LTR16C LTR ERVL 71 350 -141 2545 117 6 80 chr9 7606754 7607243 -110255384 - MLT2A2 LTR ERVL 0 453 1 878 228 34 153 chr9 7607243 7607370 -110255257 + LTR16C LTR ERVL 350 491 0 621 240 34 43 chr9 7607529 7607737 -110254890 - MER58C DNA MER1_type 0 215 10 2562 46 3 0 chr9 7609387 7609694 -110252933 + AluY SINE Alu 1 308 -3 180 0 0 0 chr9 7609694 7609714 -110252913 + (TA)n Simple_repeat Simple_repeat 2 21 0 336 355 51 0 chr9 7609752 7609890 -110252737 + L2 LINE L2 2917 3061 -211 1245 216 42 45 chr9 7609890 7610312 -110252315 - MER66A LTR ERV1 0 525 165 389 295 85 123 chr9 7610532 7610874 -110251753 + MER102b DNA MER1_type 13 341 0 2240 110 0 0 chr9 7611058 7611348 -110251279 - AluSx SINE Alu -22 290 1 218 246 18 18 chr9 7611483 7611540 -110251087 + L2 LINE L2 3179 3235 -78 240 35 0 0 chr9 7611587 7611616 -110251011 + (TA)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr9 7611615 7611644 -110250983 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 1166 148 0 48 chr9 7611650 7611879 -110250748 - L1PA16 LINE L1 -9 6157 5940 827 211 54 66 chr9 7612289 7612531 -110250096 + MER8 DNA MER2_type 1 239 0 331 370 126 38 chr9 7613009 7613406 -110249221 - L2 LINE L2 0 3272 2841 309 164 64 38 chr9 7613787 7613896 -110248731 + MER45C DNA AcHobo 82 195 -758 1274 281 76 14 chr9 7614014 7614513 -110248114 + MER45C DNA AcHobo 424 953 0 259 316 0 0 chr9 7614748 7614824 -110247803 + GA-rich Low_complexity Low_complexity 2 77 0 2710 128 7 2 chr9 7615887 7616315 -110246312 - L1PA16 LINE L1 -9 6157 5728 415 297 89 50 chr9 7616850 7617052 -110245575 - MIR SINE MIR -19 243 34 2041 152 0 0 chr9 7617465 7617761 -110244866 + AluSx SINE Alu 3 298 -14 398 255 66 76 chr9 7618705 7618891 -110243736 - MLT1J2 LTR MaLR -6 440 254 348 302 52 0 chr9 7619220 7619336 -110243291 + MIR SINE MIR 141 262 0 28 48 0 0 chr9 7619417 7619459 -110243168 + AT_rich Low_complexity Low_complexity 1 42 0 978 219 25 5 chr9 7619619 7619820 -110242807 - MER58A DNA MER1_type 0 224 20 348 283 87 36 chr9 7619896 7620034 -110242593 - MIR SINE MIR -112 150 6 509 223 0 6 chr9 7622360 7622517 -110240110 + (TA)n Simple_repeat Simple_repeat 1 156 0 259 143 0 0 chr9 7622517 7622559 -110240068 + (TG)n Simple_repeat Simple_repeat 2 43 0 393 248 46 0 chr9 7622623 7622732 -110239895 - MER94 DNA DNA -20 114 1 823 277 137 47 chr9 7623782 7624823 -110237804 + L1MEd LINE L1 599 1831 -745 22 35 0 0 chr9 7625221 7625250 -110237377 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr9 7625402 7625437 -110237190 + AT_rich Low_complexity Low_complexity 1 35 0 306 344 62 10 chr9 7625539 7625734 -110236893 + L1MEd LINE L1 2033 2237 -4159 513 268 38 28 chr9 7626463 7626676 -110235951 + MLT1J LTR MaLR 293 507 -4 434 296 25 49 chr9 7626770 7626932 -110235695 - MIR SINE MIR -73 189 32 892 219 12 0 chr9 7627478 7627647 -110234980 - MER5A DNA MER1_type -2 187 17 199 288 0 34 chr9 7627717 7627776 -110234851 - MIR SINE MIR -90 118 62 189 87 43 22 chr9 7627900 7627946 -110234681 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1366 212 98 0 chr9 7628329 7628636 -110233991 - MER58B DNA MER1_type 0 341 5 531 270 145 78 chr9 7628768 7629168 -110233459 + L1ME LINE L1 5369 5795 -326 189 250 62 16 chr9 7630254 7630318 -110232309 - MIR3 SINE MIR 0 208 142 205 195 0 172 chr9 7630504 7630591 -110232036 - MIR3 SINE MIR -22 186 115 413 321 85 66 chr9 7632411 7632716 -110229911 - L2 LINE L2 -4 3268 2958 3099 96 69 5 chr9 7633824 7634261 -110228366 - MER4C LTR ERV1 0 465 1 199 303 111 0 chr9 7634359 7634458 -110228169 - MIR SINE MIR -78 184 75 268 306 20 61 chr9 7635961 7636108 -110226519 - L2 LINE L2 0 3313 3173 613 155 108 7 chr9 7637007 7637155 -110225472 + MER53 DNA DNA 1 163 -26 246 62 0 0 chr9 7637165 7637197 -110225430 + (TG)n Simple_repeat Simple_repeat 1 32 0 1590 202 3 3 chr9 7637208 7637490 -110225137 - AluJb SINE Alu -30 282 1 231 232 116 11 chr9 7637868 7637963 -110224664 + MIR SINE MIR 81 185 -77 290 240 76 58 chr9 7638373 7638508 -110224119 - LTR26 LTR ERV1 0 691 467 1048 226 9 141 chr9 7638517 7638937 -110223690 - LTR8A LTR ERV1 -328 399 35 1169 116 0 6 chr9 7639628 7639792 -110222835 + AluSg/x SINE Alu 129 291 -21 1039 192 34 14 chr9 7640366 7640574 -110222053 - MER20 DNA MER1_type -7 212 1 397 299 32 32 chr9 7642468 7642625 -110220002 - MIR SINE MIR -86 176 20 349 316 54 6 chr9 7643250 7643418 -110219209 + MIR SINE MIR 35 210 -52 272 385 68 43 chr9 7643450 7643772 -110218855 - L2 LINE L2 -8 3264 2935 515 283 64 27 chr9 7645293 7645480 -110217147 + MIR SINE MIR 20 213 -49 321 244 209 0 chr9 7645819 7645934 -110216693 + MIR SINE MIR 60 198 -64 721 277 67 9 chr9 7645953 7646177 -110216450 - MIR SINE MIR -6 256 20 5790 117 13 3 chr9 7646177 7647030 -110215597 + L1P LINE L1 3514 4374 -1772 307 39 77 0 chr9 7697049 7697101 -110165526 - L1P1 LINE L1 -710 5445 5390 6180 53 1 1 chr9 7697101 7697917 -110164710 + L1P LINE L1 3469 4284 -1862 271 103 0 0 chr9 7697935 7697974 -110164653 - MLT2C2 LTR ERVL -48 416 378 216 0 0 0 chr9 7697975 7697999 -110164628 + (CA)n Simple_repeat Simple_repeat 1 24 0 280 135 19 0 chr9 7698005 7698057 -110164570 + MLT2B1 LTR ERVL 468 520 0 231 204 0 0 chr9 7699137 7699191 -110163436 + (CA)n Simple_repeat Simple_repeat 2 55 0 1705 189 78 44 chr9 7699531 7699982 -110162645 + MER31B LTR ERV1 1 466 0 369 280 0 0 chr9 7700655 7700748 -110161879 - MER96 DNA MER1_type? 0 175 83 708 294 74 9 chr9 7701462 7701693 -110160934 - MIR SINE MIR -11 251 6 828 246 33 48 chr9 7701874 7702249 -110160378 - L1MD3 LINE L1 0 8042 7687 226 262 0 19 chr9 7702272 7702375 -110160252 + CT-rich Low_complexity Low_complexity 2 102 0 1824 149 58 22 chr9 7702423 7702785 -110159842 + THE1C LTR MaLR 1 375 0 416 255 21 27 chr9 7704235 7704366 -110158261 + MIR SINE MIR 2 134 -74 276 77 0 0 chr9 7705143 7705182 -110157445 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 349 211 0 chr9 7705246 7705464 -110157163 + L2 LINE L2 2641 2904 -410 443 291 11 39 chr9 7705996 7706175 -110156452 + L2 LINE L2 3121 3294 -19 28 29 0 0 chr9 7707091 7707126 -110155501 + AT_rich Low_complexity Low_complexity 1 35 0 907 142 15 0 chr9 7707280 7707414 -110155213 - AluJo SINE Alu -176 136 1 258 250 12 12 chr9 7709151 7709231 -110153396 + MER112 DNA MER1_type 179 258 -2 14877 94 10 10 chr9 7710791 7713807 -110148820 - L1PA8 LINE L1 0 6172 3159 313 288 142 59 chr9 7714229 7714448 -110148179 - L2 LINE L2 0 3313 3077 360 341 49 9 chr9 7714655 7714878 -110147749 - L2 LINE L2 -799 2515 2284 757 175 6 79 chr9 7714894 7715071 -110147556 - MER58A DNA MER1_type -29 195 32 23 33 0 0 chr9 7715319 7715349 -110147278 + AT_rich Low_complexity Low_complexity 1 30 0 198 336 18 62 chr9 7716037 7716150 -110146477 - MIR SINE MIR -59 149 42 216 302 43 86 chr9 7716487 7716603 -110146024 - L2 LINE L2 -15 3257 3147 255 313 15 61 chr9 7716729 7716860 -110145767 + L2 LINE L2 3183 3307 -6 1871 222 49 22 chr9 7717196 7717686 -110144941 + MER87 LTR ERV1 33 535 -6 1404 225 30 35 chr9 7717974 7718343 -110144284 + MLT1A2 LTR MaLR 6 372 -2 374 236 0 22 chr9 7718328 7718417 -110144210 + MER21B LTR ERV1 1 87 -776 * 238 125 62 21 chr9 7718473 7718521 -110144106 + MER21B LTR ERV1 98 147 -716 2481 161 36 78 chr9 7718741 7719295 -110143332 - LTR26B LTR ERV1 0 531 1 2272 86 0 0 chr9 7719343 7719622 -110143005 - AluY SINE Alu -32 279 1 286 284 84 63 chr9 7719851 7720041 -110142586 + MER117 DNA MER1_type 4 197 0 207 111 0 28 chr9 7720066 7720102 -110142525 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 411 285 43 38 chr9 7720679 7720865 -110141762 - MIR3 SINE MIR -3 205 19 1156 196 30 121 chr9 7721041 7721470 -110141157 - MLT2D LTR ERVL -24 390 1 2106 91 66 0 chr9 7722606 7722893 -110139734 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 7723104 7723125 -110139502 + AT_rich Low_complexity Low_complexity 1 21 0 2871 100 83 21 chr9 7723135 7723615 -110139012 - MER9 LTR ERVK -1 510 1 40 0 0 0 chr9 7723762 7723802 -110138825 + AT_rich Low_complexity Low_complexity 1 40 0 272 307 45 23 chr9 7724920 7725008 -110137619 - MIR SINE MIR -89 119 30 23 0 0 0 chr9 7725631 7725654 -110136973 + AT_rich Low_complexity Low_complexity 1 23 0 222 290 54 54 chr9 7725684 7725777 -110136850 - MIR SINE MIR -97 111 19 252 0 0 0 chr9 7725784 7725812 -110136815 + (TG)n Simple_repeat Simple_repeat 2 29 0 340 336 36 0 chr9 7725899 7726039 -110136588 + MIR SINE MIR 112 256 -6 773 176 22 60 chr9 7726124 7726306 -110136321 - MER5B DNA MER1_type 0 178 4 398 270 0 0 chr9 7726672 7726761 -110135866 - L2 LINE L2 0 3272 3184 976 201 54 0 chr9 7727781 7727985 -110134642 - MER20 DNA MER1_type 0 219 5 324 0 0 0 chr9 7728296 7728332 -110134295 + (CA)n Simple_repeat Simple_repeat 2 37 0 245 250 44 29 chr9 7728397 7728465 -110134162 + MIR SINE MIR 72 140 -68 216 0 0 0 chr9 7728465 7728489 -110134138 + (CAT)n Simple_repeat Simple_repeat 2 25 0 622 275 60 63 chr9 7728537 7728901 -110133726 + L1MB1 LINE L1 413 775 -5528 1626 243 47 56 chr9 7729352 7729436 -110133191 + L1MB1 LINE L1 801 884 -5429 2457 136 0 8 chr9 7729436 7729812 -110132815 + THE1C LTR MaLR 1 373 -2 1626 243 47 56 chr9 7729812 7730648 -110131979 + L1MB1 LINE L1 884 1793 -4520 * 3458 232 27 7 chr9 7730637 7731628 -110130999 - L1 LINE L1 -2369 3777 2767 4980 169 30 13 chr9 7731630 7733339 -110129288 + L1PA16 LINE L1 4105 5833 -333 1059 85 0 0 chr9 7733340 7733469 -110129158 + AluSg SINE Alu 5 133 -177 2369 101 7 0 chr9 7733469 7733775 -110128852 + AluSg SINE Alu 1 308 -2 1580 156 25 54 chr9 7733776 7734129 -110128498 + L1PA16 LINE L1 5815 6157 -9 5763 211 56 11 chr9 7734987 7737483 -110125144 + L1MB1 LINE L1 3798 6404 0 429 279 65 13 chr9 7738362 7738516 -110124111 + L2 LINE L2 34 195 -3119 672 278 17 43 chr9 7738535 7738769 -110123858 + L2 LINE L2 3078 3305 -8 299 290 29 88 chr9 7738952 7739393 -110123234 + MLT1I LTR MaLR 1 409 0 220 304 98 29 chr9 7739678 7739780 -110122847 - L2 LINE L2 -2 3311 3203 512 255 180 12 chr9 7740014 7740175 -110122452 - MIR SINE MIR -59 203 16 465 297 24 0 chr9 7740641 7740806 -110121821 - LTR33 LTR ERVL -4 517 349 2102 220 28 18 chr9 7740836 7741336 -110121291 + MLT1D LTR MaLR 1 505 0 900 267 50 21 chr9 7741336 7741617 -110121010 - LTR33 LTR ERVL -232 289 1 351 356 58 14 chr9 7742065 7742273 -110120354 - L2 LINE L2 -214 3058 2842 189 132 0 0 chr9 7742719 7742757 -110119870 + (CA)n Simple_repeat Simple_repeat 2 39 0 200 294 103 66 chr9 7743241 7743377 -110119250 + MIR3 SINE MIR 8 148 -60 279 318 155 0 chr9 7743441 7743589 -110119038 + MIR SINE MIR 51 221 -41 745 142 0 15 chr9 7746010 7746144 -110116483 - FLAM_C SINE Alu 0 133 2 238 276 20 82 chr9 7747011 7747109 -110115518 + L2 LINE L2 1142 1233 -2081 5636 167 13 15 chr9 7747109 7748984 -110113643 - L1PB1 LINE L1 0 6151 4286 2169 134 0 0 chr9 7748984 7749283 -110113344 - AluSq SINE Alu -14 299 1 5636 167 13 15 chr9 7749283 7749550 -110113077 - L1PB1 LINE L1 -1865 4286 4020 1556 326 65 56 chr9 7749556 7749920 -110112707 + L2 LINE L2 1229 1588 -1726 861 149 0 0 chr9 7749920 7750074 -110112553 + L1MA4 LINE L1 6145 6298 -2 1556 326 65 56 chr9 7750074 7750571 -110112056 + L2 LINE L2 1588 2098 -1216 227 303 73 28 chr9 7750956 7751065 -110111562 - L2 LINE L2 -220 3052 2939 325 325 56 51 chr9 7751499 7751874 -110110753 + HAL1 LINE L1 4 380 -2127 339 310 92 28 chr9 7751939 7752081 -110110546 + HAL1 LINE L1 480 630 -1877 2297 89 0 7 chr9 7752322 7752614 -110110013 - AluSg SINE Alu -20 290 1 207 221 13 39 chr9 7752678 7752755 -110109872 + A-rich Low_complexity Low_complexity 5 79 0 2241 152 12 14 chr9 7753379 7753799 -110108828 + L1MB3 LINE L1 5757 6175 -8 39 60 0 0 chr9 7753958 7754025 -110108602 + AT_rich Low_complexity Low_complexity 1 67 0 1929 147 17 3 chr9 7754025 7754324 -110108303 + AluSx SINE Alu 1 303 -9 411 285 57 85 chr9 7755517 7755763 -110106864 - MIR3 SINE MIR -18 244 6 1830 160 0 14 chr9 7757009 7757303 -110105324 + AluJb SINE Alu 1 290 -22 857 284 96 11 chr9 7757621 7757984 -110104643 + MLT1I LTR MaLR 1 394 -15 338 288 25 25 chr9 7759458 7759576 -110103051 + MER5A DNA MER1_type 35 152 -37 288 222 28 0 chr9 7759805 7759877 -110102750 + MLT1L LTR MaLR 5 78 -537 242 244 155 37 chr9 7759947 7760124 -110102503 + MLT1J2 LTR MaLR 72 315 -196 313 315 89 98 chr9 7761007 7761334 -110101293 + L2 LINE L2 2930 3253 -19 2774 10 0 0 chr9 7761340 7761643 -110100984 + AluYb8 SINE Alu 16 318 0 23 0 0 0 chr9 7761643 7761666 -110100961 + AT_rich Low_complexity Low_complexity 1 23 0 255 289 22 11 chr9 7761704 7761794 -110100833 - MER103 DNA DNA -75 91 1 395 349 12 41 chr9 7761891 7761992 -110100635 - MIR3 SINE MIR -21 187 92 1732 251 40 41 chr9 7761992 7762547 -110100080 - MLT2B3 LTR ERVL 0 554 1 395 349 12 41 chr9 7762547 7762617 -110100010 - MIR3 SINE MIR -116 92 21 1134 302 51 20 chr9 7763039 7763430 -110099197 + MLT2E LTR ERVL 167 569 -59 1454 264 79 39 chr9 7763617 7764369 -110098258 + ERVL LTR ERVL 2104 2900 -2585 1924 163 56 28 chr9 7764384 7764459 -110098168 - MLT2A2 LTR ERVL 0 554 483 2284 114 0 0 chr9 7764459 7764767 -110097860 + AluSq SINE Alu 1 308 -5 1924 163 56 28 chr9 7764767 7765234 -110097393 - MLT2A2 LTR ERVL -71 483 1 182 33 67 0 chr9 7765529 7765559 -110097068 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1869 233 93 47 chr9 7765843 7766487 -110096140 + ERVL LTR ERVL 3813 4486 -1278 1891 278 66 12 chr9 7766540 7766794 -110095833 + ERVL LTR ERVL 4572 4811 -953 3603 142 23 5 chr9 7766794 7767393 -110095234 + MER4B LTR ERV1 1 610 0 1891 278 66 12 chr9 7767393 7767786 -110094841 + ERVL LTR ERVL 4811 5254 -510 3591 173 21 6 chr9 7767788 7768486 -110094141 + MER50 LTR ERV1 1 709 -25 4517 125 62 15 chr9 7768486 7769041 -110093586 - MER4E LTR ERV1 0 779 179 2202 91 14 7 chr9 7769041 7769328 -110093299 - AluSc SINE Alu -20 289 1 4517 125 62 15 chr9 7769328 7769516 -110093111 - MER4E LTR ERV1 -600 179 1 1112 272 91 7 chr9 7769535 7769954 -110092673 + MLT2B2 LTR ERVL 1 454 -61 210 250 0 0 chr9 7769995 7770039 -110092588 + (TATG)n Simple_repeat Simple_repeat 2 45 0 396 0 0 0 chr9 7770047 7770091 -110092536 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 270 122 0 0 chr9 7770123 7770164 -110092463 + ERVL LTR ERVL 5257 5297 -467 25 0 0 0 chr9 7771215 7771240 -110091387 + AT_rich Low_complexity Low_complexity 1 25 0 199 299 104 0 chr9 7771874 7771941 -110090686 - L2 LINE L2 -39 3233 3160 1775 190 16 19 chr9 7772879 7772941 -110089686 - MLT1A1 LTR MaLR 0 365 304 574 88 0 0 chr9 7772941 7773021 -110089606 + MADE1 DNA Mariner 1 80 0 1775 190 16 19 chr9 7773021 7773322 -110089305 - MLT1A1 LTR MaLR -61 304 3 303 304 188 0 chr9 7773966 7774078 -110088549 + MIR3 SINE MIR 67 199 -9 539 289 96 56 chr9 7774118 7774568 -110088059 + L1ME LINE L1 21 488 -5582 455 279 52 73 chr9 7774574 7774744 -110087883 + L1ME LINE L1 102 274 -5796 1960 160 0 0 chr9 7774744 7775050 -110087577 + AluSx SINE Alu 1 306 -6 455 279 52 73 chr9 7775050 7775248 -110087379 + L1ME LINE L1 274 462 -5608 * 28925 103 13 25 chr9 7775230 7781333 -110081294 + L1PA7 LINE L1 371 6468 -1 4083 276 69 10 chr9 7781339 7783223 -110079404 + L1M4 LINE L1 2271 4266 -1880 1106 216 82 40 chr9 7783228 7783318 -110079309 + L1M4 LINE L1 4407 4492 -1654 219 36 0 0 chr9 7783318 7783346 -110079281 + (CA)n Simple_repeat Simple_repeat 2 29 0 1106 216 82 40 chr9 7783346 7783705 -110078922 + L1M4 LINE L1 4492 4875 -1271 439 237 96 20 chr9 7783731 7783929 -110078698 - MLT1J1 LTR MaLR 0 446 234 487 242 8 8 chr9 7784004 7784124 -110078503 - MLT1J1 LTR MaLR -326 120 1 396 0 0 0 chr9 7784847 7784891 -110077736 + (TG)n Simple_repeat Simple_repeat 2 45 0 227 313 82 41 chr9 7785255 7785402 -110077225 - MIR SINE MIR -14 248 96 302 206 29 0 chr9 7785889 7785957 -110076670 + Charlie8 DNA MER1_type 1348 1417 -1000 335 349 11 48 chr9 7786108 7786297 -110076330 + MER5A DNA MER1_type 2 183 -6 1650 140 118 4 chr9 7786626 7786905 -110075722 - AluSx SINE Alu -1 311 1 21 57 0 0 chr9 7786908 7786943 -110075684 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr9 7787478 7787502 -110075125 + (T)n Simple_repeat Simple_repeat 1 24 0 202 349 0 0 chr9 7789071 7789134 -110073493 - L2 LINE L2 0 3272 3210 856 222 63 12 chr9 7790608 7791048 -110071579 - MLT1D LTR MaLR 0 505 7 6803 193 31 7 chr9 7791266 7791822 -110070805 - L1PA16 LINE L1 -1 6165 5624 2041 141 7 0 chr9 7791822 7792119 -110070508 - AluSx SINE Alu -13 299 1 6803 193 31 7 chr9 7792119 7793985 -110068642 - L1PA16 LINE L1 -542 5624 3675 213 65 0 0 chr9 7793985 7794016 -110068611 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6803 193 31 7 chr9 7794016 7794143 -110068484 - L1PA16 LINE L1 -2491 3675 3553 3007 85 15 0 chr9 7794145 7794556 -110068071 + MLT2A2 LTR ERVL 2 418 -35 313 187 33 44 chr9 7794570 7794661 -110067966 + L1MC4 LINE L1 6614 6703 -1339 374 127 14 0 chr9 7794663 7794734 -110067893 + (TA)n Simple_repeat Simple_repeat 1 72 0 326 100 0 0 chr9 7794736 7794786 -110067841 + MLT2A2 LTR ERVL 404 453 0 5205 260 32 31 chr9 7794786 7796868 -110065759 - L1PA16 LINE L1 -2590 3556 1473 4871 234 59 26 chr9 7797054 7797724 -110064903 + L1ME1 LINE L1 3304 3950 -2196 1990 195 29 0 chr9 7797724 7798103 -110064524 + MLT1B LTR MaLR 1 390 0 4871 234 59 26 chr9 7798103 7799185 -110063442 + L1ME1 LINE L1 3950 5115 -1031 1643 207 58 24 chr9 7799194 7799610 -110063017 + L1ME1 LINE L1 5491 5920 -246 1946 144 31 7 chr9 7799622 7799913 -110062714 + AluSx SINE Alu 1 298 -14 425 228 6 64 chr9 7799919 7799964 -110062663 + L1MA10 LINE L1 6172 6218 -116 1764 189 5 39 chr9 7799964 7800346 -110062281 + MLT1A2 LTR MaLR 4 372 -2 425 228 6 64 chr9 7800346 7800471 -110062156 + L1MA10 LINE L1 6218 6332 -2 1812 141 3 40 chr9 7803006 7803303 -110059324 - AluSq SINE Alu -27 286 1 953 252 20 56 chr9 7803386 7803630 -110058997 + MLT2F LTR ERVL 369 601 -62 287 85 21 0 chr9 7803630 7803677 -110058950 + (CA)n Simple_repeat Simple_repeat 2 49 0 953 252 20 56 chr9 7803677 7803738 -110058889 + MLT2F LTR ERVL 601 663 0 374 321 9 0 chr9 7803859 7803965 -110058662 - L2 LINE L2 -19 3294 3188 183 80 0 0 chr9 7805122 7805147 -110057480 + (TC)n Simple_repeat Simple_repeat 2 26 0 369 0 0 0 chr9 7805147 7805188 -110057439 + (CA)n Simple_repeat Simple_repeat 1 41 0 642 305 59 29 chr9 7805200 7805642 -110056985 - L1MEc LINE L1 -5873 523 69 703 57 0 0 chr9 7806311 7806399 -110056228 + AluY SINE Alu 1 88 -222 2530 59 3 3 chr9 7806746 7807052 -110055575 + AluSc SINE Alu 4 309 0 240 35 0 0 chr9 7807291 7807320 -110055307 + (A)n Simple_repeat Simple_repeat 1 29 0 304 247 37 12 chr9 7807321 7807402 -110055225 - L2 LINE L2 -5 3267 3185 320 333 42 0 chr9 7807834 7807954 -110054673 - MIR SINE MIR -83 179 55 195 424 47 0 chr9 7809305 7809390 -110053237 - L2 LINE L2 -63 3209 3121 208 353 60 24 chr9 7809540 7809707 -110052920 + L2 LINE L2 2507 2679 -635 242 254 32 16 chr9 7809787 7809850 -110052777 - L2 LINE L2 -1 3312 3249 2083 179 3 6 chr9 7810157 7810520 -110052107 - MLT1A1 LTR MaLR -3 362 1 625 274 46 20 chr9 7810523 7810720 -110051907 + MIR SINE MIR 61 262 0 254 309 9 18 chr9 7811706 7811816 -110050811 + CT-rich Low_complexity Low_complexity 4 112 0 228 200 0 20 chr9 7812252 7812302 -110050325 - L2 LINE L2 -5 3267 3219 1928 174 10 0 chr9 7812519 7812824 -110049803 + AluJb SINE Alu 5 312 0 391 365 97 24 chr9 7813751 7814011 -110048616 - L2 LINE L2 -767 2547 2267 275 281 41 89 chr9 7814011 7814157 -110048470 + MIR3 SINE MIR 4 142 -66 333 280 59 59 chr9 7815103 7815221 -110047406 - MER5B DNA MER1_type 0 178 61 1401 137 30 5 chr9 7815370 7815660 -110046967 + MLT2D LTR ERVL 3 349 -65 1304 20 0 0 chr9 7815670 7815822 -110046805 - L1PA2 LINE L1 0 6155 6004 809 175 0 0 chr9 7816632 7816758 -110045869 - FLAM_A SINE Alu -7 126 1 180 321 19 0 chr9 7817604 7817657 -110044970 + L2 LINE L2 3255 3308 -5 547 313 35 31 chr9 7817807 7818034 -110044593 + MIR SINE MIR 8 235 -27 182 289 0 0 chr9 7818004 7818049 -110044578 + L2 LINE L2 3251 3295 -18 * 2080 198 75 13 chr9 7818080 7818545 -110044082 + MLT1D LTR MaLR 12 505 0 2367 317 112 59 chr9 7819161 7819786 -110042841 - L2 LINE L2 0 3313 2723 2131 75 11 4 chr9 7819786 7820052 -110042575 - AluSp SINE Alu -7 306 39 2367 317 112 59 chr9 7820052 7822061 -110040566 - L2 LINE L2 -590 2723 541 239 267 22 0 chr9 7822084 7822174 -110040453 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 333 292 23 46 chr9 7823601 7823731 -110038896 - L2 LINE L2 0 3313 3187 342 0 0 0 chr9 7824212 7824250 -110038377 + (CA)n Simple_repeat Simple_repeat 2 39 0 1984 163 14 0 chr9 7825883 7826238 -110036389 + MER46B DNA MER2_type -1 233 -3 291 303 138 9 chr9 7826242 7826351 -110036276 - MIR SINE MIR -130 132 10 484 305 17 40 chr9 7826393 7826570 -110036057 - MER5B DNA MER1_type -3 175 3 967 321 111 38 chr9 7826620 7826662 -110035965 - L2 LINE L2 -5 3308 3271 1715 155 197 11 chr9 7826662 7827023 -110035604 + MSTA LTR MaLR 1 428 0 9583 118 35 39 chr9 7827025 7828608 -110034019 + MSTA-int LTR MaLR 3 1580 0 1363 176 92 42 chr9 7828608 7828965 -110033662 + THE1C LTR MaLR 1 375 0 967 321 111 38 chr9 7828965 7829367 -110033260 - L2 LINE L2 -41 3272 2827 5857 147 11 31 chr9 7830673 7831471 -110031156 - L1MA3 LINE L1 0 7724 6912 2133 117 3 13 chr9 7831471 7831770 -110030857 - AluSq SINE Alu -8 305 10 5857 147 11 31 chr9 7831770 7833062 -110029565 - L1MA3 LINE L1 -812 6912 5677 19314 167 39 12 chr9 7833070 7834730 -110027897 - L1MA3 LINE L1 -2748 4817 3202 2265 104 0 13 chr9 7834730 7835037 -110027590 + AluSg SINE Alu 1 303 -7 19314 167 39 12 chr9 7835037 7835856 -110026771 - L1MA3 LINE L1 -4363 3202 2406 2397 84 0 10 chr9 7835856 7836166 -110026461 - AluY SINE Alu -4 307 1 19314 167 39 12 chr9 7836166 7838364 -110024263 - L1MA3 LINE L1 -5159 2406 14 369 0 0 0 chr9 7838596 7838637 -110023990 + (GA)n Simple_repeat Simple_repeat 2 42 0 199 318 30 15 chr9 7838831 7838897 -110023730 - L3b LINE CR1 0 1583 1517 2098 138 33 28 chr9 7838917 7839279 -110023348 - THE1B LTR MaLR 0 364 1 384 360 14 7 chr9 7839279 7839418 -110023209 - MIR3 SINE MIR -25 183 44 243 295 84 0 chr9 7840548 7840643 -110021984 + MIR SINE MIR 121 223 -39 242 294 71 0 chr9 7840677 7840762 -110021865 + MIR SINE MIR 121 211 -51 303 264 45 15 chr9 7840837 7841038 -110021589 + MER113 DNA MER1_type? 19 225 -296 480 229 238 0 chr9 7841109 7841231 -110021396 + MER5A DNA MER1_type 9 159 -30 350 245 115 43 chr9 7842417 7842556 -110020071 - MIR3 SINE MIR 0 208 60 1124 265 54 52 chr9 7844326 7844771 -110017856 - MLT1J1 LTR MaLR 0 446 1 340 296 12 0 chr9 7844900 7844981 -110017646 - L2 LINE L2 0 3272 3191 180 0 0 0 chr9 7845306 7845326 -110017301 + (CAA)n Simple_repeat Simple_repeat 2 21 0 293 298 107 16 chr9 7845546 7845667 -110016960 + MIR SINE MIR 17 148 -114 1363 213 24 14 chr9 7846510 7846801 -110015826 - MLT1A1 LTR MaLR -71 294 1 378 237 89 106 chr9 7847197 7847433 -110015194 - MLT1L LTR MaLR -221 394 163 504 196 0 14 chr9 7847523 7847661 -110014966 - LTR37A LTR ERV1 0 426 291 34800 90 18 11 chr9 7847699 7853809 -110008818 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr9 7853809 7853830 -110008797 + AT_rich Low_complexity Low_complexity 1 21 0 1978 118 38 3 chr9 7853869 7854157 -110008470 + AluSx SINE Alu 1 298 -14 634 221 12 91 chr9 7854166 7854420 -110008207 - LTR37A LTR ERV1 -174 252 19 827 217 27 0 chr9 7855464 7855648 -110006979 - MER5A DNA MER1_type 0 189 1 191 231 183 10 chr9 7857224 7857328 -110005299 - MIR SINE MIR 0 262 141 5923 88 11 16 chr9 7857395 7858293 -110004334 - L1PA12 LINE L1 0 6168 5275 1191 190 86 30 chr9 7858383 7858793 -110003834 + MLT1D LTR MaLR 1 483 -22 242 243 139 56 chr9 7859491 7859635 -110002992 - MIR SINE MIR -26 236 81 572 295 100 33 chr9 7860601 7860930 -110001697 + LTR33 LTR ERVL 167 517 -4 212 167 0 0 chr9 7862361 7862403 -110000224 + A-rich Low_complexity Low_complexity 1 42 0 1047 291 42 9 chr9 7863874 7864207 -109998420 - MLT1I LTR MaLR -3 406 63 222 320 120 10 chr9 7865346 7865446 -109997181 - L2 LINE L2 0 3313 3203 242 217 0 0 chr9 7866168 7866214 -109996413 - MIR SINE MIR -110 152 107 1101 211 52 83 chr9 7866570 7867015 -109995612 + MLT1C LTR MaLR 37 467 0 217 87 22 22 chr9 7867044 7867090 -109995537 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1822 150 89 29 chr9 7867169 7867549 -109995078 + MER57A LTR ERV1 1 403 0 3062 168 3 43 chr9 7867582 7868111 -109994516 + MLT2B3 LTR ERVL 1 507 -47 1826 171 33 0 chr9 7868111 7868444 -109994183 + MER2 DNA MER2_type 1 344 0 3062 168 3 43 chr9 7868444 7868491 -109994136 + MLT2B3 LTR ERVL 507 554 0 293 216 0 0 chr9 7868642 7868693 -109993934 - MLT2B3 LTR ERVL -175 379 329 430 292 192 9 chr9 7869085 7869304 -109993323 - MIR SINE MIR 0 262 4 200 354 0 97 chr9 7869452 7869565 -109993062 + MIR SINE MIR 19 120 -88 12173 129 27 13 chr9 7871167 7872108 -109990519 - Tigger1 DNA MER2_type 0 2418 1491 2259 115 0 0 chr9 7872108 7872404 -109990223 - AluSg SINE Alu -14 296 1 12173 129 27 13 chr9 7872404 7873754 -109988873 - Tigger1 DNA MER2_type -927 1491 1 379 311 7 40 chr9 7873916 7874064 -109988563 - L2 LINE L2 -4 3309 3167 448 293 66 52 chr9 7874264 7874476 -109988151 - MLT1K LTR MaLR -185 403 189 373 215 45 0 chr9 7874543 7874632 -109987995 - FRAM SINE Alu -72 94 11 229 262 7 117 chr9 7874941 7875086 -109987541 - MIR SINE MIR -27 235 107 196 265 61 92 chr9 7875804 7875902 -109986725 - MIR SINE MIR -48 214 120 914 210 88 46 chr9 7875964 7876293 -109986334 - MER2 DNA MER2_type -1 343 1 261 0 0 0 chr9 7877345 7877374 -109985253 + (T)n Simple_repeat Simple_repeat 1 29 0 641 256 55 29 chr9 7877453 7877691 -109984936 - MLT1A2 LTR MaLR 0 374 131 222 413 7 21 chr9 7877839 7877982 -109984645 + MIR SINE MIR 6 146 -116 537 304 42 6 chr9 7878181 7878349 -109984278 + MER5B DNA MER1_type 1 174 -4 5161 170 29 21 chr9 7878445 7879464 -109983163 - L1PA16 LINE L1 -10 6156 5123 1860 180 3 0 chr9 7879464 7879775 -109982852 + AluJb SINE Alu 1 312 0 5161 170 29 21 chr9 7879775 7880493 -109982134 - L1PA16 LINE L1 -1043 5123 4412 1718 237 60 5 chr9 7880972 7881390 -109981237 + MLT1A1-int LTR MaLR 1294 1734 -1 1364 217 26 29 chr9 7881397 7881710 -109980917 + MLT1A1 LTR MaLR 1 312 -53 365 298 0 11 chr9 7881883 7881977 -109980650 + L2 LINE L2 3180 3272 0 464 229 28 28 chr9 7882615 7882759 -109979868 - L1MC4a LINE L1 -1839 5969 5826 185 267 17 50 chr9 7883049 7883109 -109979518 - L2 LINE L2 -667 2647 2590 964 271 12 0 chr9 7883780 7884027 -109978600 + MIR SINE MIR 13 262 0 6722 208 37 53 chr9 7884452 7886170 -109976457 + L1ME1 LINE L1 3657 5338 -828 1469 173 0 0 chr9 7886170 7886401 -109976226 + AluJb SINE Alu 76 306 -6 6722 208 37 53 chr9 7886401 7886892 -109975735 + L1ME1 LINE L1 5338 5835 -331 324 91 0 30 chr9 7886896 7886946 -109975681 + L1MA7 LINE L1 6227 6290 -1 1722 182 8 54 chr9 7886958 7886994 -109975633 + L1MB5 LINE L1 5821 5857 -317 3735 111 8 2 chr9 7886994 7887501 -109975126 + MER75 DNA T2_type 5 514 0 1722 182 8 54 chr9 7887501 7887698 -109974929 + L1MB5 LINE L1 5857 6033 -141 1731 182 7 3 chr9 7887698 7887994 -109974633 - AluJb SINE Alu -15 297 1 1722 182 8 54 chr9 7887994 7888128 -109974499 + L1MB5 LINE L1 6033 6172 -2 301 372 30 12 chr9 7888323 7888487 -109974140 + L3 LINE CR1 35 201 -1376 432 248 74 109 chr9 7888497 7888699 -109973928 + L3 LINE CR1 403 597 -980 216 333 211 0 chr9 7888939 7889029 -109973598 - L2 LINE L2 -22 3250 3142 440 300 73 0 chr9 7889148 7889258 -109973369 - MLT1J2 LTR MaLR -145 305 188 311 280 30 10 chr9 7889290 7889390 -109973237 - MLT1J2 LTR MaLR -342 108 7 477 28 9 255 chr9 7889658 7889764 -109972863 - MADE1 DNA Mariner 0 80 1 485 292 92 33 chr9 7891091 7891331 -109971296 + MIR SINE MIR 9 262 0 208 333 14 0 chr9 7891988 7892057 -109970570 - MIR SINE MIR -113 149 80 286 272 25 0 chr9 7893196 7893277 -109969350 + L2 LINE L2 2998 3080 -192 228 324 109 39 chr9 7893481 7893711 -109968916 + L2 LINE L2 2772 3057 -215 1973 138 41 29 chr9 7894541 7894881 -109967746 + MER2 DNA MER2_type 1 344 0 219 259 55 28 chr9 7895023 7895121 -109967506 + L2 LINE L2 2875 2983 -330 1154 259 95 18 chr9 7895159 7895549 -109967078 - LTR16A LTR ERVL -13 437 18 441 253 140 43 chr9 7896029 7896400 -109966227 - L1ME4a LINE L1 -1 6120 5714 430 313 40 45 chr9 7896565 7896741 -109965886 + MIR3 SINE MIR 33 207 -1 410 290 15 8 chr9 7897374 7897505 -109965122 - MIR SINE MIR -10 252 121 6080 161 46 18 chr9 7897914 7898338 -109964289 + Tigger1 DNA MER2_type 3 413 -2005 2188 96 0 0 chr9 7898338 7898610 -109964017 + AluSg SINE Alu 2 273 -37 222 37 0 0 chr9 7898614 7898641 -109963986 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6080 161 46 18 chr9 7898641 7899295 -109963332 + Tigger1 DNA MER2_type 415 1117 -1301 2541 127 117 5 chr9 7899301 7899719 -109962908 + MER4C LTR ERV1 1 465 0 446 115 0 0 chr9 7899720 7899781 -109962846 + Tigger1 DNA MER2_type 1120 1180 -1238 7753 136 14 19 chr9 7899951 7900568 -109962059 + Tigger1 DNA MER2_type 1187 1795 -623 2191 134 0 0 chr9 7900568 7900873 -109961754 + AluSg SINE Alu 1 305 -5 7753 136 14 19 chr9 7900873 7901494 -109961133 + Tigger1 DNA MER2_type 1795 2418 0 239 257 149 0 chr9 7901897 7901971 -109960656 + L2 LINE L2 3203 3287 -26 7516 49 1 0 chr9 7902305 7903750 -109958877 - L1PA5 LINE L1 0 6154 4700 245 316 70 18 chr9 7904053 7904167 -109958460 - MIR SINE MIR -44 218 99 305 277 79 2 chr9 7904864 7904995 -109957632 + MIR SINE MIR 18 157 -92 639 301 128 38 chr9 7905751 7906595 -109956032 - L2 LINE L2 0 3313 2380 256 260 128 108 chr9 7906726 7906976 -109955651 + MIR SINE MIR 8 262 0 189 295 67 95 chr9 7907092 7907197 -109955430 + MIR SINE MIR 45 146 -62 211 263 147 32 chr9 7907353 7907448 -109955179 - MIR SINE MIR -71 191 86 1345 155 116 5 chr9 7907717 7908013 -109954614 - MER33 DNA MER1_type -4 320 1 195 100 0 0 chr9 7908312 7908342 -109954285 + (TA)n Simple_repeat Simple_repeat 2 31 0 333 270 174 0 chr9 7909286 7909401 -109953226 + MIR SINE MIR 60 194 -68 479 313 44 22 chr9 7910663 7910845 -109951782 + MER5A DNA MER1_type 1 186 -3 268 214 2 2 chr9 7911782 7911847 -109950780 - MLT1L LTR MaLR -137 465 310 219 289 0 0 chr9 7912200 7912245 -109950382 + polypurine Low_complexity Low_complexity 3 47 0 2269 97 0 17 chr9 7913483 7913783 -109948844 + AluY SINE Alu 1 295 -16 318 259 47 0 chr9 7915140 7915225 -109947402 - MIR3 SINE MIR -8 200 112 2044 299 56 19 chr9 7915235 7916217 -109946410 - L2 LINE L2 -1 3312 2298 2329 112 0 0 chr9 7917101 7917406 -109945221 - AluSx SINE Alu -7 305 1 211 294 22 66 chr9 7917500 7917636 -109944991 - MIR SINE MIR -42 220 91 237 263 158 21 chr9 7918218 7918313 -109944314 - MIR SINE MIR -69 193 86 244 207 64 129 chr9 7918560 7918700 -109943927 + MIR SINE MIR 66 196 -66 594 101 13 0 chr9 7918851 7918930 -109943697 - MADE1 DNA Mariner 0 80 1 262 315 130 55 chr9 7919496 7919595 -109943032 + L2 LINE L2 3116 3231 -41 1743 188 94 31 chr9 7919595 7919946 -109942681 - MER93b LTR ERV1 0 373 1 262 315 130 55 chr9 7919946 7919992 -109942635 + L2 LINE L2 3231 3272 0 26 0 0 0 chr9 7920223 7920249 -109942378 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr9 7920453 7920477 -109942150 + GC_rich Low_complexity Low_complexity 1 24 0 2472 130 154 82 chr9 7920722 7921285 -109941342 - LTR18B LTR ERVL -10 604 1 10693 160 10 2 chr9 7921438 7923079 -109939548 - HERVL18 LTR ERVL 0 6047 4394 5068 166 8 65 chr9 7923081 7923995 -109938632 - HERVL18 LTR ERVL -2468 3579 2718 * 13385 189 15 5 chr9 7923992 7926293 -109936334 - HERVL18 LTR ERVL -3595 2452 68 969 228 0 0 chr9 7926307 7926487 -109936140 + HERVL18 LTR ERVL 1065 1244 -4803 2411 135 136 131 chr9 7926576 7927185 -109935442 - LTR18B LTR ERVL 0 614 3 480 369 5 5 chr9 7927495 7927682 -109934945 - MIR3 SINE MIR -2 206 20 717 195 32 32 chr9 7927761 7927915 -109934712 - MER5A DNA MER1_type -35 154 1 722 328 80 48 chr9 7927982 7928986 -109933641 - L2 LINE L2 0 3272 2233 326 283 242 0 chr9 7929279 7929399 -109933228 + MIR SINE MIR 89 237 -25 1737 204 115 87 chr9 7929650 7930257 -109932370 - MLT1E3 LTR MaLR 0 624 1 180 0 0 0 chr9 7930503 7930523 -109932104 + (A)n Simple_repeat Simple_repeat 1 20 0 2451 158 61 7 chr9 7931844 7932256 -109930371 + Tigger2a DNA MER2_type 1 434 0 244 353 49 8 chr9 7932321 7932443 -109930184 + L3 LINE CR1 1356 1482 -95 213 364 64 16 chr9 7933104 7933261 -109929366 + MIR SINE MIR 55 223 -39 26 88 0 0 chr9 7933422 7933490 -109929137 + AT_rich Low_complexity Low_complexity 1 68 0 279 297 59 20 chr9 7933942 7934043 -109928584 - MIR SINE MIR -48 214 110 287 282 141 43 chr9 7934345 7934508 -109928119 + MIR SINE MIR 20 198 -64 21 0 0 0 chr9 7934530 7934551 -109928076 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 7935242 7935264 -109927363 + GC_rich Low_complexity Low_complexity 1 22 0 2341 91 0 13 chr9 7935604 7935911 -109926716 - AluSq SINE Alu -10 303 1 10975 136 42 7 chr9 7935916 7937965 -109924662 - Tigger1 DNA MER2_type -242 2176 1 260 250 9 26 chr9 7938763 7938879 -109923748 + (TA)n Simple_repeat Simple_repeat 1 114 0 396 59 0 0 chr9 7938884 7938935 -109923692 + (TG)n Simple_repeat Simple_repeat 1 51 0 359 329 43 23 chr9 7938937 7939115 -109923512 + MIR3 SINE MIR 10 194 -14 26 0 0 0 chr9 7939370 7939396 -109923231 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 7940078 7940099 -109922528 + AT_rich Low_complexity Low_complexity 1 21 0 1087 286 107 28 chr9 7940236 7940770 -109921857 - L1MC4a LINE L1 -1926 5882 5307 383 303 139 24 chr9 7940773 7941146 -109921481 - L1MC4a LINE L1 -846 5300 4885 701 158 113 15 chr9 7941168 7941301 -109921326 + FAM SINE Alu 20 165 -20 23 68 0 0 chr9 7941302 7941346 -109921281 + AT_rich Low_complexity Low_complexity 1 44 0 329 169 12 0 chr9 7941365 7941448 -109921179 + (TA)n Simple_repeat Simple_repeat 2 85 0 542 341 65 11 chr9 7941448 7941944 -109920683 - L1MC4a LINE L1 -1301 4845 4318 342 0 0 0 chr9 7942009 7942047 -109920580 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 335 76 38 chr9 7942058 7942348 -109920279 - L1MC4a LINE L1 -2476 3670 3370 1650 199 0 4 chr9 7942354 7942635 -109919992 + AluJo SINE Alu 1 280 -32 1423 244 101 7 chr9 7942722 7943136 -109919491 + MLT1D LTR MaLR 51 503 -2 560 217 45 19 chr9 7943215 7943372 -109919255 - HAL1b LINE L1 -849 499 339 24 53 0 0 chr9 7943953 7943991 -109918636 + AT_rich Low_complexity Low_complexity 1 38 0 663 238 50 30 chr9 7946156 7946358 -109916269 + MLT1I LTR MaLR 204 409 0 294 203 68 14 chr9 7946356 7946430 -109916197 + MER20B DNA MER1_type 1 78 -705 * 21 71 0 0 chr9 7946655 7946697 -109915930 + AT_rich Low_complexity Low_complexity 1 42 0 233 316 13 26 chr9 7946723 7946799 -109915828 + L2 LINE L2 3190 3264 -8 466 301 38 0 chr9 7948821 7948954 -109913673 - MIR SINE MIR -64 198 61 415 306 108 16 chr9 7949001 7949187 -109913440 - MIR SINE MIR -59 203 1 480 319 32 27 chr9 7949607 7949795 -109912832 - MIR SINE MIR -40 222 34 224 100 25 0 chr9 7950881 7950921 -109911706 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 1350 13 0 0 chr9 7950927 7951082 -109911545 - L1PA2 LINE L1 -4 6151 5997 572 106 14 0 chr9 7951082 7951172 -109911455 + L1PA2 LINE L1 5903 6000 -161 21 36 0 0 chr9 7951740 7951768 -109910859 + AT_rich Low_complexity Low_complexity 1 28 0 7395 26 8 0 chr9 7952075 7952943 -109909684 - L1PA5 LINE L1 -5 6149 5275 263 296 35 70 chr9 7953191 7953210 -109909417 - MER5A DNA MER1_type -1 188 170 1359 171 117 107 chr9 7953210 7953308 -109909319 - MSTD LTR MaLR 0 396 300 2308 110 0 3 chr9 7953308 7953618 -109909009 - AluSg SINE Alu -1 309 1 1359 171 117 107 chr9 7953618 7953911 -109908716 - MSTD LTR MaLR -96 300 1 263 296 35 70 chr9 7953911 7954006 -109908621 - MER5A DNA MER1_type -19 170 78 2297 248 55 23 chr9 7954013 7954674 -109907953 + L1ME1 LINE L1 5480 6161 -5 363 44 0 0 chr9 7954801 7954846 -109907781 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 186 0 0 chr9 7955082 7955125 -109907502 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1451 127 16 65 chr9 7955134 7955441 -109907186 + L1MB8 LINE L1 5887 6178 0 2528 233 49 50 chr9 7955523 7956465 -109906162 + L1MC5 LINE L1 6638 7578 -383 445 242 117 16 chr9 7956606 7956734 -109905893 + MER21B LTR ERV1 363 503 -360 489 194 57 87 chr9 7956766 7956825 -109905802 + L1MC5 LINE L1 7618 7677 -284 2082 134 3 10 chr9 7956825 7957138 -109905489 - AluSx SINE Alu -1 311 1 489 194 57 87 chr9 7957138 7957377 -109905250 + L1MC5 LINE L1 7677 7907 -54 1141 201 219 72 chr9 7958344 7958861 -109903766 + MLT1E1 LTR MaLR 1 654 0 316 205 60 12 chr9 7959613 7959696 -109902931 + MIR3 SINE MIR 87 173 -35 1003 282 104 14 chr9 7959829 7960272 -109902355 + L1MC4a LINE L1 5413 5895 -1913 2283 89 3 52 chr9 7960282 7960609 -109902018 + AluSp SINE Alu 3 313 0 280 125 31 0 chr9 7960639 7960703 -109901924 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 71 0 0 chr9 7960968 7961010 -109901617 + AT_rich Low_complexity Low_complexity 1 42 0 615 298 8 55 chr9 7961566 7961804 -109900823 + MIR SINE MIR 20 246 -16 555 220 143 14 chr9 7961798 7961982 -109900645 - MIR SINE MIR -19 243 40 * 2156 255 18 8 chr9 7963549 7964063 -109898564 - LTR40a LTR ERVL 0 519 1 808 263 95 0 chr9 7964063 7964295 -109898332 - HERVL40 LTR ERVL 0 5530 5277 514 324 17 29 chr9 7964281 7964522 -109898105 - MER89-int LTR ERV1 -319 6482 6245 * 350 266 48 96 chr9 7964619 7964848 -109897779 - HERVL40 LTR ERVL -333 2704 2487 781 239 67 100 chr9 7965065 7965395 -109897232 - HERVL40 LTR ERVL -688 4660 2034 2119 222 24 30 chr9 7965429 7965670 -109896957 + MLT1D LTR MaLR 8 249 -256 2118 109 53 34 chr9 7965670 7966027 -109896600 - THE1B LTR MaLR 0 364 1 2119 222 24 30 chr9 7966027 7966286 -109896341 + MLT1D LTR MaLR 249 505 0 7038 251 47 30 chr9 7966288 7968187 -109894440 - HERVL40 LTR ERVL -1269 4261 2330 886 284 74 53 chr9 7968187 7968692 -109893935 + L2 LINE L2 2750 3274 -39 1240 199 45 87 chr9 8020552 8020933 -109841694 - MLT1A1 LTR MaLR 0 365 1 291 303 174 17 chr9 8021559 8021800 -109840827 + L1MC/D LINE L1 5294 5572 -2236 916 222 4 78 chr9 8021800 8021957 -109840670 + MLT1A1 LTR MaLR 1 133 -232 1807 174 0 10 chr9 8021957 8022262 -109840365 + AluJo SINE Alu 1 302 -10 916 222 4 78 chr9 8022262 8022361 -109840266 + MLT1A1 LTR MaLR 133 238 -127 489 306 41 0 chr9 8023594 8023741 -109838886 + MIR3 SINE MIR 50 202 -6 238 282 24 12 chr9 8024099 8024184 -109838443 - LTR16A1 LTR ERVL -25 432 347 682 271 107 27 chr9 8025301 8025469 -109837158 + LTR16C LTR ERVL 209 407 -84 756 164 99 6 chr9 8025469 8025640 -109836987 - MER53 DNA DNA 0 189 3 682 271 107 27 chr9 8025640 8025733 -109836894 + LTR16C LTR ERVL 407 491 0 509 284 52 90 chr9 8025877 8026243 -109836384 + MLT1J LTR MaLR 158 509 -2 249 333 0 29 chr9 8026295 8026364 -109836263 + L2 LINE L2 3009 3075 -238 204 330 144 0 chr9 8026415 8026512 -109836115 + MIR SINE MIR 152 262 0 2051 142 3 3 chr9 8026791 8027094 -109835533 + AluSg SINE Alu 1 303 -7 219 180 0 20 chr9 8027096 8027146 -109835481 + (ATTG)n Simple_repeat Simple_repeat 4 52 0 394 261 9 0 chr9 8027149 8027264 -109835363 + L1MC4 LINE L1 7922 8037 -5 256 220 186 0 chr9 8027311 8027370 -109835257 - MIR3 SINE MIR -48 160 91 223 305 0 0 chr9 8029053 8029112 -109833515 + (CA)n Simple_repeat Simple_repeat 2 60 0 302 298 165 0 chr9 8029127 8029248 -109833379 - L2 LINE L2 -12 3301 3161 1598 203 11 44 chr9 8029376 8029736 -109832891 + MER7A DNA MER2_type 1 346 0 193 377 57 16 chr9 8030131 8030253 -109832374 - L2 LINE L2 -9 3263 3137 566 345 22 9 chr9 8030369 8030601 -109832026 - MIR SINE MIR -10 252 18 1843 175 63 26 chr9 8030659 8031041 -109831586 - MSTD LTR MaLR 0 396 1 258 229 0 0 chr9 8031415 8031485 -109831142 + GA-rich Low_complexity Low_complexity 3 72 0 685 281 54 40 chr9 8032345 8032569 -109830058 - MIR SINE MIR -18 244 18 562 275 39 28 chr9 8032623 8032801 -109829826 + MLT1K LTR MaLR 26 205 -383 451 265 113 63 chr9 8032804 8033042 -109829585 + MLT1K LTR MaLR 331 580 -8 1907 197 14 3 chr9 8033387 8033738 -109828889 - MLT1A1 LTR MaLR 0 365 11 1573 214 27 24 chr9 8033753 8034126 -109828501 + MLT1A2 LTR MaLR 1 374 0 188 200 22 22 chr9 8034336 8034381 -109828246 + L2 LINE L2 3264 3308 -5 2343 167 151 10 chr9 8034404 8034666 -109827961 - MLT2B3 LTR ERVL 0 554 330 203 0 37 0 chr9 8034666 8034693 -109827934 + (GA)n Simple_repeat Simple_repeat 2 29 0 2343 167 151 10 chr9 8034693 8034914 -109827713 - MLT2B3 LTR ERVL -224 330 3 215 227 0 0 chr9 8035010 8035054 -109827573 + (TATG)n Simple_repeat Simple_repeat 1 44 0 507 33 0 0 chr9 8035056 8035117 -109827510 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 420 269 40 86 chr9 8035901 8036076 -109826551 + MER63A DNA MER1_type 44 210 0 23 0 0 0 chr9 8036375 8036398 -109826229 + AT_rich Low_complexity Low_complexity 1 23 0 210 135 19 39 chr9 8037061 8037113 -109825514 + GA-rich Low_complexity Low_complexity 2 52 0 358 252 74 0 chr9 8037302 8037437 -109825190 + L1ME4a LINE L1 5690 5834 -287 1384 230 48 19 chr9 8037510 8037954 -109824673 + L1ME1 LINE L1 5688 6137 -27 303 253 100 65 chr9 8037959 8037988 -109824639 + L1ME4a LINE L1 5879 5906 -215 1811 178 45 17 chr9 8037988 8038343 -109824284 - MLT1A1 LTR MaLR 0 365 1 303 253 100 65 chr9 8038343 8038483 -109824144 + L1ME4a LINE L1 5906 6054 -67 239 276 13 13 chr9 8038531 8038607 -109824020 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 23 54 0 0 chr9 8039075 8039112 -109823515 + AT_rich Low_complexity Low_complexity 1 37 0 203 291 219 40 chr9 8039168 8039319 -109823308 - MIR SINE MIR -84 178 1 2731 29 3 0 chr9 8040599 8040909 -109821718 - AluY SINE Alu 0 311 1 189 226 0 0 chr9 8040948 8041001 -109821626 + (TA)n Simple_repeat Simple_repeat 1 53 0 388 135 135 0 chr9 8043426 8043500 -109819127 - MLT1B LTR MaLR -305 85 2 212 253 0 131 chr9 8043690 8043789 -109818838 - MIR SINE MIR -89 173 88 488 333 64 5 chr9 8045073 8045277 -109817350 - MIR SINE MIR 0 262 47 415 238 25 16 chr9 8046106 8046228 -109816399 - L1ME3A LINE L1 -284 5886 5764 21 0 0 0 chr9 8046591 8046612 -109816015 + AT_rich Low_complexity Low_complexity 1 21 0 321 264 110 12 chr9 8046939 8047126 -109815501 - L1ME3 LINE L1 -289 5873 5665 659 302 74 20 chr9 8047190 8047976 -109814651 - L1ME3 LINE L1 -649 5513 4677 417 293 91 55 chr9 8048042 8048605 -109814022 - L1ME3 LINE L1 -1952 4194 3612 341 278 137 67 chr9 8048692 8048976 -109813651 - L1ME3 LINE L1 -2611 3535 3232 2718 84 16 11 chr9 8049156 8049527 -109813100 + THE1C LTR MaLR 1 373 -2 4666 67 2 2 chr9 8051425 8052026 -109810601 - L1PA7 LINE L1 0 6154 5554 29 47 0 0 chr9 8052033 8052076 -109810551 + AT_rich Low_complexity Low_complexity 1 43 0 789 217 56 28 chr9 8052876 8053056 -109809571 - MER3 DNA MER1_type -24 185 1 181 270 0 0 chr9 8053316 8053353 -109809274 + L2 LINE L2 3256 3292 -21 299 219 37 0 chr9 8053363 8053445 -109809182 - LTR50 LTR ERVL 0 795 711 1141 245 133 28 chr9 8053471 8053969 -109808658 - LTR50 LTR ERVL -142 653 1 3005 201 98 28 chr9 8054100 8055537 -109807090 + L1MB5 LINE L1 4304 5851 -323 182 235 0 0 chr9 8055613 8055647 -109806980 - L2 LINE L2 -6 3266 3233 499 257 151 29 chr9 8055649 8055855 -109806772 - MIR SINE MIR 0 262 32 201 368 15 0 chr9 8056796 8056864 -109805763 + MIR SINE MIR 54 122 -86 24 96 0 0 chr9 8056895 8056968 -109805659 + AT_rich Low_complexity Low_complexity 1 73 0 466 371 0 10 chr9 8056972 8057166 -109805461 - MIR SINE MIR -13 249 58 193 279 29 44 chr9 8057258 8057326 -109805301 + L2 LINE L2 3194 3260 -12 246 213 0 0 chr9 8057911 8057958 -109804669 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr9 8057958 8058011 -109804616 + AT_rich Low_complexity Low_complexity 1 53 0 230 288 15 0 chr9 8059284 8059350 -109803277 - MER113 DNA MER1_type? -3 518 452 1698 203 48 6 chr9 8059470 8059805 -109802822 + MLT1A1 LTR MaLR 1 349 -16 215 238 0 0 chr9 8059805 8059847 -109802780 + L2 LINE L2 3228 3269 -3 259 333 26 9 chr9 8060134 8060248 -109802379 - MIR SINE MIR -55 207 92 318 295 109 12 chr9 8060565 8060887 -109801740 - L1MEc LINE L1 -2169 4046 3694 249 303 79 0 chr9 8060918 8060994 -109801633 + L2 LINE L2 3192 3273 -40 209 204 0 20 chr9 8061014 8061063 -109801564 + GA-rich Low_complexity Low_complexity 3 50 0 996 325 88 45 chr9 8061130 8062254 -109800373 - L1MEc LINE L1 -2659 3556 2384 531 220 15 38 chr9 8062451 8062583 -109800044 + FLAM_A SINE Alu 8 136 -6 314 318 136 15 chr9 8062629 8062893 -109799734 - L1MEc LINE L1 -3998 2398 2103 1475 165 44 54 chr9 8063588 8063885 -109798742 - AluJo SINE Alu -13 299 6 234 284 99 45 chr9 8063955 8064198 -109798429 - HAL1 LINE L1 -1151 1356 1101 23 54 0 0 chr9 8064222 8064259 -109798368 + AT_rich Low_complexity Low_complexity 1 37 0 276 310 23 11 chr9 8064994 8065081 -109797546 + MIR SINE MIR 57 144 -64 234 91 0 0 chr9 8066362 8066395 -109796232 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr9 8066716 8066739 -109795888 + (CA)n Simple_repeat Simple_repeat 2 24 0 438 243 13 185 chr9 8067535 8067835 -109794792 + MIR SINE MIR 4 248 -14 225 178 0 0 chr9 8067980 8068025 -109794602 + (CA)n Simple_repeat Simple_repeat 1 45 0 267 356 30 0 chr9 8069247 8069379 -109793248 + LTR16A LTR ERVL 13 148 -302 253 321 44 50 chr9 8070849 8071070 -109791557 - MIR3 SINE MIR -34 228 14 803 297 38 4 chr9 8071893 8072156 -109790471 + L2 LINE L2 2896 3167 -146 542 286 124 0 chr9 8072177 8072338 -109790289 + MIR SINE MIR 13 193 -69 488 304 0 14 chr9 8072385 8072523 -109790104 + L2 LINE L2 3178 3313 0 2795 163 5 66 chr9 8073743 8074315 -109788312 + MER74A LTR ERVL 1 537 -21 1181 188 39 0 chr9 8074779 8074987 -109787640 + MER58A DNA MER1_type 1 216 -8 2093 113 0 3 chr9 8075365 8075673 -109786954 + AluSq SINE Alu 1 307 0 373 186 134 0 chr9 8075842 8075939 -109786688 + MER20 DNA MER1_type 25 134 -85 6956 155 12 21 chr9 8075948 8077451 -109785176 - Ricksha DNA DNA -13 3238 1711 626 152 16 24 chr9 8077437 8077562 -109785065 - Ricksha DNA DNA -1122 132 9 * 532 224 9 0 chr9 8077581 8077688 -109784939 + MER20 DNA MER1_type 107 214 -5 182 240 135 31 chr9 8077693 8077789 -109784838 + MIR SINE MIR 102 207 -55 21 36 0 0 chr9 8077823 8077851 -109784776 + AT_rich Low_complexity Low_complexity 1 28 0 704 174 52 0 chr9 8078786 8078901 -109783726 - FLAM_A SINE Alu -9 124 4 195 392 13 0 chr9 8081573 8081652 -109780975 + L2 LINE L2 3164 3243 -29 436 266 16 23 chr9 8081813 8081941 -109780686 - MIR SINE MIR -21 241 115 216 202 26 26 chr9 8082024 8082138 -109780489 + (TA)n Simple_repeat Simple_repeat 2 115 0 454 224 0 112 chr9 8082293 8082427 -109780200 - MIR3 SINE MIR -46 162 44 216 217 49 105 chr9 8082617 8082760 -109779867 + L2 LINE L2 2878 3012 -260 525 227 109 0 chr9 8082865 8082975 -109779652 + MER45A DNA AcHobo 57 178 0 243 297 81 0 chr9 8083034 8083108 -109779519 + L2 LINE L2 3136 3215 -57 240 352 16 39 chr9 8083937 8084040 -109778587 - L2 LINE L2 -7 3306 3207 896 223 9 40 chr9 8084040 8084264 -109778363 + MIR SINE MIR 2 218 -44 2121 133 7 0 chr9 8084748 8085057 -109777570 - AluSx SINE Alu 0 312 2 2264 101 0 16 chr9 8085130 8085437 -109777190 - AluSg SINE Alu -8 302 1 2013 137 21 6 chr9 8087120 8087456 -109775171 + L1P4 LINE L1 5393 5733 -432 1463 214 31 26 chr9 8087507 8087891 -109774736 - MER89 LTR ERV1 0 559 174 318 143 32 0 chr9 8087891 8087954 -109774673 - MER89 LTR ERV1 -494 65 1 995 150 56 100 chr9 8087995 8088075 -109774552 + MER33 DNA MER1_type 1 83 -2502 2215 71 0 52 chr9 8088075 8088385 -109774242 + AluY SINE Alu 1 294 -17 995 150 56 100 chr9 8088385 8088643 -109773984 + MER33 DNA MER1_type 83 324 0 413 322 17 0 chr9 8092568 8092683 -109769944 + MIR3 SINE MIR 86 202 -6 28 48 0 0 chr9 8093072 8093114 -109769513 + AT_rich Low_complexity Low_complexity 1 42 0 262 239 103 77 chr9 8094290 8094407 -109768220 - MER20B DNA MER1_type -607 176 57 1991 165 123 8 chr9 8094898 8095280 -109767347 - MSTA LTR MaLR 0 428 3 1648 171 3 58 chr9 8095503 8095681 -109766946 - AluJo SINE Alu -2 310 157 1996 144 17 0 chr9 8095681 8095972 -109766655 - AluSx SINE Alu -16 296 1 1648 171 3 58 chr9 8095972 8096120 -109766507 - AluJo SINE Alu -155 157 2 442 326 47 23 chr9 8096390 8096562 -109766065 - MIR SINE MIR -50 212 37 201 310 42 0 chr9 8096783 8096854 -109765773 - MIR3 SINE MIR -11 197 124 363 277 97 13 chr9 8096855 8097010 -109765617 + MLT1J2 LTR MaLR 1 168 -282 228 86 0 0 chr9 8097031 8097066 -109765561 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chr9 8097150 8097185 -109765442 + AT_rich Low_complexity Low_complexity 1 35 0 820 192 7 0 chr9 8097192 8097338 -109765289 - AluJb SINE Alu -30 282 136 260 243 0 27 chr9 8097352 8097426 -109765201 + MLT1I LTR MaLR 336 407 -2 486 272 97 20 chr9 8098171 8098395 -109764232 + L1M4b LINE L1 11 549 -6306 1121 267 40 14 chr9 8098508 8098928 -109763699 + L1ME1 LINE L1 5731 6161 -5 184 283 321 9 chr9 8099142 8099248 -109763379 - MIR3 SINE MIR -16 192 54 269 294 147 45 chr9 8099826 8100003 -109762624 + MIR SINE MIR 7 201 -61 227 343 95 0 chr9 8100558 8100663 -109761964 + L2 LINE L2 3150 3264 -8 1882 127 25 28 chr9 8102199 8102482 -109760145 - AluY SINE Alu -29 282 1 23 0 0 0 chr9 8104556 8104579 -109758048 + AT_rich Low_complexity Low_complexity 1 23 0 2088 117 7 3 chr9 8104675 8104990 -109757637 - AluSq SINE Alu 0 316 1 22 56 0 0 chr9 8106330 8106366 -109756261 + AT_rich Low_complexity Low_complexity 1 36 0 183 292 167 31 chr9 8106841 8106937 -109755690 - L2 LINE L2 -1 3312 3204 326 367 130 18 chr9 8107590 8107982 -109754645 - L2 LINE L2 0 3272 2837 1238 123 36 5 chr9 8108132 8108351 -109754276 - L1MA8 LINE L1 -5 6286 6061 36705 69 10 8 chr9 8108358 8114453 -109748174 - L1PA3 LINE L1 -3 6152 44 3912 145 9 0 chr9 8114453 8115267 -109747360 - L1MA8 LINE L1 -744 5402 4450 1570 154 0 0 chr9 8115293 8115565 -109747062 - L1MA8 LINE L1 -1800 4346 4075 1142 168 15 0 chr9 8115786 8115989 -109746638 + L1PA15 LINE L1 5939 6144 -21 263 314 128 21 chr9 8116405 8116647 -109745980 - LTR33A LTR ERVL -129 394 127 1064 226 146 45 chr9 8116881 8117258 -109745369 + LTR48 LTR ERV1 1 415 -372 529 153 26 97 chr9 8117261 8117530 -109745097 + MER39 LTR ERV1 544 707 0 232 196 0 0 chr9 8118530 8118576 -109744051 - Charlie8 DNA MER1_type -2162 255 210 225 277 89 50 chr9 8118614 8118715 -109743912 - L2 LINE L2 -283 3030 2926 587 245 0 73 chr9 8118715 8118760 -109743867 - MER5B DNA MER1_type 0 178 131 2564 81 0 0 chr9 8118760 8119069 -109743558 - AluSx SINE Alu -3 309 1 587 245 0 73 chr9 8119069 8119215 -109743412 - MER5B DNA MER1_type -47 131 1 226 287 63 34 chr9 8119798 8120035 -109742592 + L1ME4a LINE L1 5872 6115 -6 282 29 0 0 chr9 8120085 8120120 -109742507 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr9 8120178 8120202 -109742425 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 283 230 81 23 chr9 8121054 8121141 -109741486 - MIR3 SINE MIR -50 158 67 1545 166 60 21 chr9 8122226 8122539 -109740088 - MER2 DNA MER2_type 0 345 17 2434 127 27 78 chr9 8122539 8122988 -109739639 - MSTB LTR MaLR 0 426 1 1545 166 60 21 chr9 8122988 8123006 -109739621 - MER2 DNA MER2_type -328 17 1 265 308 0 0 chr9 8123435 8123500 -109739127 + L3b LINE CR1 1276 1340 -243 7996 25 2 2 chr9 8123643 8125361 -109737266 - L1PA3 LINE L1 -1 6154 4437 850 9 0 0 chr9 8125361 8125468 -109737159 + L1PA3 LINE L1 4326 4432 -1714 188 245 0 38 chr9 8125684 8125737 -109736890 - L2 LINE L2 0 3313 3263 198 71 0 0 chr9 8126860 8126888 -109735739 + (TA)n Simple_repeat Simple_repeat 2 29 0 258 222 69 0 chr9 8127777 8127849 -109734778 - MIR SINE MIR -88 174 98 7921 130 16 1 chr9 8128109 8129378 -109733249 + HSMAR2 DNA Mariner 5 1292 -10 380 325 80 51 chr9 8129834 8130185 -109732442 + L2 LINE L2 2535 2895 -419 300 369 0 39 chr9 8130348 8130478 -109732149 + L2 LINE L2 3133 3257 -15 452 243 59 64 chr9 8130492 8130556 -109732071 - MIR SINE MIR -3 259 196 2247 192 12 19 chr9 8130556 8130789 -109731838 - MSTB LTR MaLR -2 424 194 1435 234 3 23 chr9 8130789 8131092 -109731535 - AluJb SINE Alu -15 297 1 2247 192 12 19 chr9 8131092 8131285 -109731342 - MSTB LTR MaLR -232 194 1 452 243 59 64 chr9 8131285 8131441 -109731186 - MIR SINE MIR -66 196 40 213 253 220 22 chr9 8132559 8132650 -109729977 + MIR SINE MIR 36 144 -118 820 136 7 50 chr9 8132918 8133058 -109729569 - AluJo SINE Alu -178 134 1 219 242 16 16 chr9 8134024 8134086 -109728541 + L2 LINE L2 3251 3312 -1 755 263 124 0 chr9 8134193 8134410 -109728217 + MIR SINE MIR 14 257 -5 218 281 158 23 chr9 8134484 8134753 -109727874 - L2 LINE L2 0 3272 2928 780 201 36 82 chr9 8134822 8135041 -109727586 - MER20 DNA MER1_type -10 209 1 183 379 81 0 chr9 8136466 8136590 -109726037 + L3b LINE CR1 1377 1510 -73 186 167 0 0 chr9 8137165 8137201 -109725426 + (TG)n Simple_repeat Simple_repeat 2 37 0 317 266 38 0 chr9 8137793 8137872 -109724755 + L2 LINE L2 3190 3271 -1 402 100 0 0 chr9 8138740 8138800 -109723827 + (TG)n Simple_repeat Simple_repeat 2 61 0 1242 218 157 11 chr9 8139646 8140271 -109722356 - LTR50 LTR ERVL 0 795 5 296 396 132 7 chr9 8140677 8140821 -109721806 + MER91A DNA MER1_type 34 195 -1 194 263 70 0 chr9 8140852 8140909 -109721718 + L2 LINE L2 3006 3066 -206 1286 211 34 4 chr9 8141297 8141726 -109720901 + L1MB8 LINE L1 5137 5578 -596 2020 132 140 8 chr9 8141735 8142113 -109720514 - MSTA LTR MaLR 0 428 1 8968 168 19 31 chr9 8142118 8143783 -109718844 - MSTA-int LTR MaLR -6 1645 1 2250 127 99 10 chr9 8143783 8144176 -109718451 - MSTA LTR MaLR 0 428 1 1469 176 35 6 chr9 8144176 8144495 -109718132 + L1MB8 LINE L1 5583 5910 -268 398 145 0 0 chr9 8144497 8144559 -109718068 - MADE1 DNA Mariner -18 62 1 394 228 11 5 chr9 8144559 8144747 -109717880 + L1MB8 LINE L1 5908 6172 -6 400 349 24 8 chr9 8144969 8145095 -109717532 - L2 LINE L2 0 3272 3145 761 326 143 33 chr9 8145144 8145746 -109716881 - L2 LINE L2 -653 2661 1994 241 174 0 0 chr9 8146060 8146106 -109716521 - L1MB1 LINE L1 -1 6167 6122 2801 110 19 14 chr9 8146108 8146536 -109716091 - L1PA16 LINE L1 0 6166 5737 3100 149 5 13 chr9 8146536 8147331 -109715296 + L1PA16 LINE L1 4949 5737 -429 473 162 108 0 chr9 8147329 8147440 -109715187 - L1MB1 LINE L1 -39 6129 6007 * 841 180 19 0 chr9 8147444 8147605 -109715022 - L1MB1 LINE L1 -236 5932 5769 * 24463 63 5 2 chr9 8147604 8151572 -109711055 - L1PA6 LINE L1 0 6154 2175 3852 131 29 3 chr9 8151572 8152191 -109710436 - MER11B LTR ERVK -601 635 1 4825 167 34 5 chr9 8152191 8153697 -109708930 - L1PA14 LINE L1 -332 6480 4935 5285 167 19 10 chr9 8153699 8155265 -109707362 + L1PB1 LINE L1 4573 6143 -8 11262 199 39 32 chr9 8155280 8159502 -109703125 - L1PA14 LINE L1 -1851 4946 728 279 0 0 0 chr9 8159502 8159533 -109703094 + (CA)n Simple_repeat Simple_repeat 1 31 0 11262 199 39 32 chr9 8159533 8160142 -109702485 - L1PA14 LINE L1 -6069 728 125 2294 272 71 28 chr9 8160147 8161486 -109701141 - L1M4 LINE L1 -2478 3668 2273 27 0 0 0 chr9 8161568 8161595 -109701032 + AT_rich Low_complexity Low_complexity 1 27 0 203 0 37 0 chr9 8162071 8162098 -109700529 + (TTA)n Simple_repeat Simple_repeat 3 30 0 278 267 139 10 chr9 8163395 8163496 -109699131 + LTR16A LTR ERVL 337 450 0 255 176 68 27 chr9 8163497 8163571 -109699056 + MLT1K LTR MaLR 496 572 -16 832 166 21 100 chr9 8163848 8164089 -109698538 - L1MA4A LINE L1 -114 6189 5968 * 1627 51 0 0 chr9 8164066 8164281 -109698346 - L1P2 LINE L1 -644 5510 5296 * 1652 121 18 33 chr9 8164272 8164544 -109698083 + L1M1 LINE L1 5465 5732 -571 * 12292 218 55 22 chr9 8164542 8166596 -109696031 - L1 LINE L1 -842 6006 4023 234 0 0 0 chr9 8166596 8166622 -109696005 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 12292 218 55 22 chr9 8166622 8168505 -109694122 - L1 LINE L1 -2825 4023 1908 3659 202 61 13 chr9 8168513 8169278 -109693349 - L1 LINE L1 -6067 782 2 388 222 5 62 chr9 8170051 8170160 -109692467 - MLT2E LTR ERVL -336 185 36 24 0 0 0 chr9 8170427 8170451 -109692176 + AT_rich Low_complexity Low_complexity 1 24 0 201 268 0 36 chr9 8171353 8171409 -109691218 + GA-rich Low_complexity Low_complexity 4 57 0 437 315 56 29 chr9 8172134 8172687 -109689940 - L1MC4a LINE L1 -846 5445 5297 286 245 170 34 chr9 8172774 8173039 -109689588 - L1MC4a LINE L1 -1773 4373 4073 2429 77 3 3 chr9 8173105 8173416 -109689211 - AluY SINE Alu 0 311 1 321 306 32 64 chr9 8173420 8173639 -109688988 - L1MC4a LINE L1 -2117 4029 3818 723 119 24 8 chr9 8173663 8173789 -109688838 - L1MA5A LINE L1 -4 6293 6166 2716 125 26 9 chr9 8173818 8174273 -109688354 - L1PA16 LINE L1 -9 6157 5695 5483 245 66 25 chr9 8174275 8175040 -109687587 - L1M4 LINE L1 -758 5388 4656 1702 187 0 22 chr9 8175040 8175355 -109687272 - AluJo SINE Alu 0 312 5 5483 245 66 25 chr9 8175355 8176862 -109685765 - L1M4 LINE L1 -1490 4656 2762 287 266 64 0 chr9 8177065 8177159 -109685468 - L1PA12 LINE L1 -5398 2183 2084 914 343 20 51 chr9 8177258 8177891 -109684736 - L1PA12 LINE L1 -6173 1401 788 227 272 52 81 chr9 8177920 8178093 -109684534 - L1MC4a LINE L1 -2342 3804 3637 253 328 55 55 chr9 8178137 8178320 -109684307 - MER5A DNA MER1_type -2 187 5 1504 319 83 25 chr9 8178390 8179207 -109683420 + HAL1 LINE L1 10 874 -1633 185 62 0 31 chr9 8179216 8179248 -109683379 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 3415 25 0 0 chr9 8179248 8179643 -109682984 - L1PA4 LINE L1 -24 6131 5737 363 0 0 0 chr9 8179640 8179680 -109682947 + L1P2 LINE L1 5618 5657 -497 * 461 238 115 73 chr9 8179676 8180251 -109682376 + HAL1 LINE L1 863 1461 -1046 456 318 40 0 chr9 8180251 8180399 -109682228 + L2 LINE L2 3160 3313 0 381 316 36 14 chr9 8180590 8180729 -109681898 - L3 LINE CR1 -8 1569 1428 2030 130 0 0 chr9 8181203 8181480 -109681147 - AluSq SINE Alu -15 298 22 339 270 132 7 chr9 8181743 8181895 -109680732 + MIR3 SINE MIR 31 201 -7 1997 112 13 16 chr9 8181941 8182244 -109680383 - AluSq SINE Alu -11 302 1 293 306 50 16 chr9 8182643 8182764 -109679863 + MIR3 SINE MIR 8 132 -76 200 231 19 19 chr9 8182921 8182973 -109679654 - L2 LINE L2 -8 3305 3254 415 232 141 68 chr9 8183491 8183668 -109678959 - MIR SINE MIR -24 238 49 4627 88 8 8 chr9 8183921 8184571 -109678056 + L1PA10 LINE L1 5519 6168 0 302 186 253 98 chr9 8184609 8184803 -109677824 + MLT1H LTR MaLR 1 224 -325 2388 151 45 0 chr9 8184842 8185239 -109677388 - MSTB LTR MaLR -11 415 1 35615 93 5 5 chr9 8185448 8191594 -109671033 - L1PA6 LINE L1 -4 6150 11 1986 111 0 14 chr9 8192561 8192840 -109669787 + AluSc SINE Alu 1 275 -34 756 32 0 0 chr9 8192840 8192935 -109669692 + (TC)n Simple_repeat Simple_repeat 2 96 0 2485 56 0 3 chr9 8193023 8193328 -109669299 + AluY SINE Alu 1 304 -7 1745 44 0 31 chr9 8193498 8193726 -109668901 + L1PA5 LINE L1 5928 6148 -6 203 211 0 0 chr9 8194249 8194287 -109668340 - MIR SINE MIR -72 136 99 264 170 0 0 chr9 8194394 8194447 -109668180 + (TATG)n Simple_repeat Simple_repeat 2 54 0 353 292 175 38 chr9 8194787 8195181 -109667446 + MLT1L LTR MaLR 166 613 -2 216 261 0 0 chr9 8195378 8195424 -109667203 - MER5A DNA MER1_type -128 61 16 234 174 0 0 chr9 8195551 8195597 -109667030 + (ATG)n Simple_repeat Simple_repeat 3 48 0 788 277 38 34 chr9 8195626 8195778 -109666849 + MIR SINE MIR 7 162 -100 1899 148 49 25 chr9 8195778 8196144 -109666483 + THE1C LTR MaLR 1 375 0 788 277 38 34 chr9 8196144 8196226 -109666401 + MIR SINE MIR 162 242 -20 323 260 79 0 chr9 8198112 8198239 -109664388 - L1ME4a LINE L1 -50 6071 5935 350 299 216 0 chr9 8199836 8199970 -109662657 - MER5A DNA MER1_type -2 187 25 2750 20 0 0 chr9 8201134 8201437 -109661190 + AluY SINE Alu 1 303 -8 595 324 29 0 chr9 8202854 8203024 -109659603 + MIR3 SINE MIR 19 193 -15 10717 199 26 44 chr9 8203522 8203978 -109658649 - L1PA16 LINE L1 0 6166 5703 2584 108 14 3 chr9 8203978 8204348 -109658279 - THE1C LTR MaLR -1 374 1 10717 199 26 44 chr9 8204348 8204762 -109657865 - L1PA16 LINE L1 -463 5703 5283 3780 94 14 38 chr9 8204762 8205387 -109657240 - L1MA2 LINE L1 0 6304 5695 10717 199 26 44 chr9 8205387 8206235 -109656392 - L1PA16 LINE L1 -883 5283 4421 2316 98 0 16 chr9 8206235 8206551 -109656076 - AluY SINE Alu 0 311 1 10717 199 26 44 chr9 8206551 8208711 -109653916 - L1PA16 LINE L1 -1745 4421 2329 20891 48 4 1 chr9 8208711 8212133 -109650494 - L1PA5 LINE L1 0 6154 2725 10717 199 26 44 chr9 8212133 8212177 -109650450 - L1PA16 LINE L1 -3837 2329 2286 209 179 39 77 chr9 8212248 8212326 -109650301 + A-rich Low_complexity Low_complexity 5 79 0 516 268 0 9 chr9 8214204 8214316 -109648311 + MIR SINE MIR 41 151 -111 210 71 0 0 chr9 8214886 8214914 -109647713 + (TA)n Simple_repeat Simple_repeat 1 28 0 301 263 131 0 chr9 8214917 8215016 -109647611 - MIR SINE MIR -25 237 126 377 265 103 0 chr9 8215352 8215469 -109647158 + Zaphod DNA AcHobo 3900 4028 -3 516 271 17 0 chr9 8215470 8215588 -109647039 - MIR SINE MIR -137 125 6 336 219 93 35 chr9 8215947 8216132 -109646495 + MIR SINE MIR 10 248 -14 580 266 83 16 chr9 8216185 8216377 -109646250 - MIR SINE MIR -1 261 57 1041 243 31 20 chr9 8216383 8216704 -109645923 - MER58B DNA MER1_type 0 341 1 1502 214 57 10 chr9 8217823 8218230 -109644397 + LTR37A LTR ERV1 1 426 0 245 325 105 26 chr9 8219784 8219898 -109642729 - L2 LINE L2 -12 3260 3138 625 355 132 20 chr9 8220450 8221307 -109641320 - L2 LINE L2 -825 2489 1537 417 225 28 84 chr9 8222925 8223067 -109639560 + MIR SINE MIR 8 141 -121 181 246 31 77 chr9 8223249 8223314 -109639313 - L2 LINE L2 -45 3268 3207 783 290 75 36 chr9 8223336 8223695 -109638932 + LTR33 LTR ERVL 149 521 0 397 339 48 16 chr9 8223834 8224020 -109638607 - MIR SINE MIR -70 192 1 493 276 6 41 chr9 8225098 8225268 -109637359 + MIR SINE MIR 29 191 -69 197 367 41 31 chr9 8227028 8227126 -109635501 - L2 LINE L2 -32 3240 3142 1140 189 42 0 chr9 8227394 8227654 -109634973 + L1MA4 LINE L1 6018 6288 -12 767 297 64 55 chr9 8227930 8228368 -109634259 - L1MEd LINE L1 -5613 506 65 503 329 70 51 chr9 8228526 8228882 -109633745 + L2 LINE L2 2939 3301 -12 537 258 22 39 chr9 8229482 8229660 -109632967 + MER5B DNA MER1_type 2 176 -2 291 337 0 0 chr9 8229737 8229829 -109632798 + L2 LINE L2 3180 3271 -1 21 36 0 0 chr9 8230715 8230743 -109631884 + AT_rich Low_complexity Low_complexity 1 28 0 369 43 0 0 chr9 8230949 8230996 -109631631 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 5100 171 35 24 chr9 8232462 8233836 -109628791 - L1MA9 LINE L1 0 6312 4927 2742 136 28 29 chr9 8233826 8234457 -109628170 - L1P4 LINE L1 -425 5740 5113 * 1154 193 75 55 chr9 8234456 8234908 -109627719 - L1MA9 LINE L1 -2757 3389 2929 * 859 254 39 21 chr9 8234959 8235238 -109627389 + L1MA9 LINE L1 5987 6270 -42 4029 146 84 40 chr9 8235620 8236509 -109626118 - L1PB4 LINE L1 0 6156 5229 6154 147 17 4 chr9 8236509 8237527 -109625100 + Ricksha_c DNA DNA 906 1936 -110 336 282 0 48 chr9 8237654 8237692 -109624935 + L1MC4 LINE L1 6608 6646 -1396 333 0 0 0 chr9 8237692 8237729 -109624898 + (TC)n Simple_repeat Simple_repeat 2 38 0 369 321 0 0 chr9 8237729 8237813 -109624814 - L1MC4 LINE L1 -1341 6701 6618 21 36 0 0 chr9 8237931 8237959 -109624668 + AT_rich Low_complexity Low_complexity 1 28 0 2025 124 0 7 chr9 8238062 8238360 -109624267 + AluSx SINE Alu 1 296 -16 43 56 0 0 chr9 8238498 8238569 -109624058 + AT_rich Low_complexity Low_complexity 1 71 0 1783 117 8 4 chr9 8240246 8240511 -109622116 - AluSc SINE Alu -9 300 35 1100 266 100 35 chr9 8240642 8241154 -109621473 - MLT1H LTR MaLR 0 549 5 584 276 136 0 chr9 8241278 8241499 -109621128 + MIR SINE MIR 12 262 0 324 266 120 20 chr9 8242655 8242789 -109619838 - MIR SINE MIR -62 146 38 279 0 0 0 chr9 8243000 8243031 -109619596 + (CA)n Simple_repeat Simple_repeat 1 31 0 1997 94 59 0 chr9 8244235 8244521 -109618106 - AluSg SINE Alu -5 305 3 386 304 92 16 chr9 8245430 8245614 -109617013 + MIR SINE MIR 54 251 -11 272 323 51 109 chr9 8246535 8246866 -109615761 - L2 LINE L2 0 3272 2961 227 323 240 15 chr9 8247144 8247481 -109615146 - L2 LINE L2 -925 2389 1977 753 272 109 32 chr9 8248154 8248503 -109614124 - MLT1H LTR MaLR -147 408 40 305 277 0 0 chr9 8248583 8248648 -109613979 + MIR SINE MIR 3 67 -195 193 266 16 47 chr9 8248704 8248768 -109613859 + MIR SINE MIR 201 262 0 501 242 99 6 chr9 8249020 8249181 -109613446 - L1ME LINE L1 -439 5682 5507 483 18 0 0 chr9 8250993 8251049 -109611578 + (TA)n Simple_repeat Simple_repeat 2 57 0 2020 186 21 8 chr9 8251127 8251508 -109611119 + MLT1B LTR MaLR 3 388 -2 24 32 0 0 chr9 8251570 8251601 -109611026 + AT_rich Low_complexity Low_complexity 1 31 0 287 210 32 0 chr9 8251757 8251819 -109610808 - MLT1I LTR MaLR 0 409 346 497 292 14 14 chr9 8252110 8252254 -109610373 - MLT1I LTR MaLR -207 202 59 1982 309 16 48 chr9 8253125 8253872 -109608755 + L1PA15 LINE L1 1 723 -6064 13995 229 27 18 chr9 8253987 8256492 -109606135 + L1PA15 LINE L1 1324 3804 -3012 2479 123 13 11 chr9 8256492 8256866 -109605761 + THE1C LTR MaLR 1 375 0 13995 229 27 18 chr9 8256866 8259813 -109602814 + L1PA15 LINE L1 3804 6815 -1 216 86 0 0 chr9 8260955 8260990 -109601637 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 8261059 8261080 -109601547 + AT_rich Low_complexity Low_complexity 1 21 0 250 200 0 50 chr9 8261556 8261616 -109601011 + L2 LINE L2 3255 3311 -2 22 56 0 0 chr9 8261950 8261986 -109600641 + AT_rich Low_complexity Low_complexity 1 36 0 264 222 0 0 chr9 8262575 8262647 -109599980 + (TG)n Simple_repeat Simple_repeat 1 72 0 224 275 62 118 chr9 8262968 8263167 -109599460 - MIR3 SINE MIR -5 203 15 333 0 0 0 chr9 8263167 8263204 -109599423 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 224 275 62 118 chr9 8263204 8263215 -109599412 - MIR3 SINE MIR -193 15 5 340 230 190 10 chr9 8263341 8263441 -109599186 - L2 LINE L2 -1 3312 3195 1996 134 0 0 chr9 8265207 8265513 -109597114 - AluSc SINE Alu -3 306 1 501 270 122 26 chr9 8265605 8265997 -109596630 - MLT1H1 LTR MaLR 0 555 64 549 328 6 22 chr9 8267239 8267419 -109595208 - MIR SINE MIR -32 230 54 1775 229 28 21 chr9 8267459 8267892 -109594735 - L1ME1 LINE L1 -9 6157 5722 2408 67 0 0 chr9 8268112 8268412 -109594215 - AluY SINE Alu -11 300 1 191 265 61 0 chr9 8268436 8268485 -109594142 + L2 LINE L2 3221 3272 0 409 326 12 22 chr9 8269049 8269229 -109593398 + MIR SINE MIR 30 206 -41 2267 81 7 3 chr9 8270233 8270542 -109592085 + AluY SINE Alu 1 310 -1 341 260 81 18 chr9 8273753 8273934 -109588693 + L1ME LINE L1 515 750 -5384 276 279 93 8 chr9 8274115 8274244 -109588383 + L1ME LINE L1 267 406 -5664 625 260 47 30 chr9 8274367 8274792 -109587835 + L1ME LINE L1 463 900 -5170 * 3734 236 62 19 chr9 8274769 8275612 -109587015 + L1ME LINE L1 2549 3458 -2622 1932 134 0 0 chr9 8275612 8275902 -109586725 - AluSx SINE Alu -20 292 3 3734 236 62 19 chr9 8275902 8276245 -109586382 + L1ME LINE L1 3458 3785 -2295 915 159 19 0 chr9 8278007 8278164 -109584463 - AluJb SINE Alu -15 297 138 653 270 61 22 chr9 8279472 8279702 -109582925 + MIR SINE MIR 8 246 -16 180 158 40 13 chr9 8281434 8281510 -109581117 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 251 181 36 24 chr9 8281527 8281693 -109580934 + (TCTCTG)n Simple_repeat Simple_repeat 4 171 0 435 156 21 54 chr9 8281710 8281896 -109580731 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 996 145 0 12 chr9 8282362 8282534 -109580093 - AluSp SINE Alu -10 303 134 2260 95 0 3 chr9 8282534 8282838 -109579789 - AluY SINE Alu -8 303 1 262 282 51 0 chr9 8283758 8283836 -109578791 + MER5A DNA MER1_type 4 85 -104 232 277 9 9 chr9 8283914 8284026 -109578601 + (CA)n Simple_repeat Simple_repeat 2 113 0 1284 189 0 26 chr9 8284343 8284633 -109577994 + AluJo SINE Alu 25 307 0 246 302 148 16 chr9 8284771 8284960 -109577667 - MIR SINE MIR -26 236 23 2633 107 8 8 chr9 8286546 8286919 -109575708 - THE1C LTR MaLR 0 375 3 279 311 47 0 chr9 8288141 8288255 -109574372 + MIR SINE MIR 30 147 -70 247 216 98 49 chr9 8288831 8288933 -109573694 - LTR16C LTR ERVL 0 491 385 208 195 0 46 chr9 8289625 8289712 -109572915 + (CACCC)n Simple_repeat Simple_repeat 3 85 0 2098 127 0 10 chr9 8290803 8291111 -109571516 - AluSx SINE Alu -6 306 2 1273 263 54 28 chr9 8291668 8292129 -109570498 - MLT1E2 LTR MaLR -7 619 147 200 271 83 52 chr9 8294958 8295054 -109567573 + MIR3 SINE MIR 78 176 -32 367 293 18 42 chr9 8296491 8296658 -109565969 - MER58B DNA MER1_type -2 339 177 1073 175 60 19 chr9 8296750 8297019 -109565608 - THE1C LTR MaLR 0 375 96 2119 59 0 0 chr9 8297122 8297378 -109565249 - L1PA5 LINE L1 -1 6153 5898 197 190 103 17 chr9 8298091 8298149 -109564478 - L2 LINE L2 -23 3249 3187 * 297 279 58 0 chr9 8298129 8298233 -109564394 - MIR SINE MIR -124 138 29 216 184 0 0 chr9 8298922 8298960 -109563667 + (CA)n Simple_repeat Simple_repeat 1 38 0 282 243 0 0 chr9 8299092 8299166 -109563461 + G-rich Low_complexity Low_complexity 1 74 0 633 276 92 0 chr9 8301510 8301749 -109560878 - Charlie5 DNA MER1_type 0 2624 2364 256 288 14 0 chr9 8301736 8301809 -109560818 - Charlie5 DNA MER1_type -2536 76 3 * 215 286 83 7 chr9 8302335 8302429 -109560198 + MIR SINE MIR 45 144 -64 564 214 17 0 chr9 8302637 8302810 -109559817 + CT-rich Low_complexity Low_complexity 1 176 0 1480 94 44 5 chr9 8303696 8303899 -109558728 + AluSg/x SINE Alu 83 293 -17 259 301 54 0 chr9 8304645 8304738 -109557889 + MIR3 SINE MIR 92 189 -19 298 224 0 0 chr9 8304871 8304929 -109557698 + L2 LINE L2 3215 3272 0 1696 149 55 3 chr9 8304999 8305288 -109557339 - AluSx SINE Alu -8 304 1 421 345 40 0 chr9 8306231 8306405 -109556222 + MIR SINE MIR 50 230 -32 1165 252 55 3 chr9 8307000 8307325 -109555302 + MER7A DNA MER2_type 1 340 -6 298 283 11 22 chr9 8307711 8307803 -109554824 + MIR SINE MIR 87 177 -85 188 333 0 0 chr9 8307859 8307907 -109554720 - MIR SINE MIR -106 156 109 233 209 75 0 chr9 8308984 8309051 -109553576 - MLT1J LTR MaLR -341 170 99 181 296 28 14 chr9 8310832 8310903 -109551724 + L2 LINE L2 2994 3065 -248 2352 60 0 0 chr9 8311137 8311448 -109551179 - AluY SINE Alu 0 311 1 817 164 0 29 chr9 8311448 8311588 -109551039 - AluJo SINE Alu -176 136 1 1912 97 0 0 chr9 8311637 8311884 -109550743 - AluSx SINE Alu -19 293 47 186 200 20 20 chr9 8312512 8312562 -109550065 - MIR SINE MIR -57 151 102 390 303 70 32 chr9 8312962 8313147 -109549480 + MIR SINE MIR 41 232 -30 401 330 62 17 chr9 8313413 8313704 -109548923 - L1MEc LINE L1 -6028 368 65 627 253 220 10 chr9 8315571 8315930 -109546697 - MLT1C LTR MaLR -47 420 1 194 126 11 69 chr9 8316639 8316726 -109545901 + (GGA)n Simple_repeat Simple_repeat 2 83 0 351 297 109 0 chr9 8318908 8319046 -109543581 - MIR SINE MIR -19 243 91 23 0 0 0 chr9 8320741 8320764 -109541863 + GC_rich Low_complexity Low_complexity 1 23 0 326 251 115 20 chr9 8322276 8322394 -109540233 + MIR SINE MIR 33 162 -46 2122 78 58 3 chr9 8322548 8322843 -109539784 - AluY SINE Alu 0 311 1 2299 258 92 8 chr9 8323734 8324486 -109538141 - MER21B LTR ERV1 0 863 49 276 294 0 0 chr9 8324497 8324565 -109538062 - MER21B LTR ERV1 -777 86 19 285 244 37 0 chr9 8324678 8324760 -109537867 + MLT1E2 LTR MaLR 124 208 -418 248 259 0 0 chr9 8325082 8325140 -109537487 + MARNA DNA Mariner 436 493 -93 1883 184 47 19 chr9 8326183 8326548 -109536079 + THE1C LTR MaLR 1 375 0 495 244 154 5 chr9 8327261 8327462 -109535165 - MER113 DNA MER1_type? -230 291 61 279 363 9 9 chr9 8327489 8327602 -109535025 - L3 LINE CR1 -48 1529 1417 392 330 84 0 chr9 8328318 8328497 -109534130 - MIR SINE MIR -26 236 43 22 0 0 0 chr9 8329180 8329202 -109533425 + GC_rich Low_complexity Low_complexity 1 22 0 206 295 33 0 chr9 8330833 8330894 -109531733 - MER91B DNA MER1_type -127 63 1 569 209 157 5 chr9 8330901 8331111 -109531516 - MLT1D LTR MaLR -157 348 107 372 277 108 19 chr9 8331899 8332112 -109530515 - LTR16A LTR ERVL -17 433 202 255 168 76 0 chr9 8332186 8332305 -109530322 + (CAGGA)n Simple_repeat Simple_repeat 3 130 0 242 272 48 24 chr9 8332305 8332430 -109530197 + (CGGGA)n Simple_repeat Simple_repeat 3 130 0 1732 231 86 25 chr9 8335834 8336324 -109526303 - MLT2B1 LTR ERVL 0 520 1 2659 104 8 29 chr9 8336896 8337279 -109525348 + THE1C LTR MaLR 1 375 0 441 104 42 52 chr9 8339014 8339110 -109523517 - L1MA8 LINE L1 -1 6290 6196 234 245 28 56 chr9 8342916 8343059 -109519568 + GA-rich Low_complexity Low_complexity 3 141 0 190 222 0 37 chr9 8345183 8345237 -109517390 - MIR SINE MIR -64 144 93 201 244 0 0 chr9 8345412 8345457 -109517170 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 230 198 19 36 chr9 8346468 8346537 -109516090 - MIR SINE MIR -61 147 98 3164 200 61 7 chr9 8351139 8351898 -109510729 + L1 LINE L1 3240 4039 -2107 259 119 0 0 chr9 8351901 8351943 -109510684 + L1 LINE L1 3998 4039 -2107 259 119 0 0 chr9 8351946 8351988 -109510639 + L1 LINE L1 3998 4039 -2107 259 119 0 0 chr9 8351991 8352033 -109510594 + L1 LINE L1 3998 4039 -2107 243 143 0 0 chr9 8352084 8352126 -109510501 + L1 LINE L1 3998 4039 -2107 1697 160 53 53 chr9 8352129 8352504 -109510123 + L1 LINE L1 3998 4372 -1774 2207 122 7 0 chr9 8352505 8352799 -109509828 + AluSq SINE Alu 1 296 -17 381 259 29 43 chr9 8352803 8352942 -109509685 - L2 LINE L2 -256 3057 2921 5019 286 39 17 chr9 8353067 8355166 -109507461 - L1P LINE L1 -2537 3609 1466 430 335 70 44 chr9 8355655 8355998 -109506629 + MLT1J2 LTR MaLR 99 450 0 289 283 10 10 chr9 8356400 8356427 -109506200 + L3 LINE CR1 647 673 -904 2543 196 21 44 chr9 8356427 8356994 -109505633 - MLT2B3 LTR ERVL 0 554 1 289 283 10 10 chr9 8356994 8357065 -109505562 + L3 LINE CR1 672 745 -832 2043 118 48 3 chr9 8357421 8357710 -109504917 - AluSc SINE Alu -7 302 1 207 139 23 23 chr9 8357869 8357912 -109504715 + A-rich Low_complexity Low_complexity 2 44 0 229 373 117 12 chr9 8358199 8358446 -109504181 + L3 LINE CR1 1251 1523 -54 1860 191 0 20 chr9 8358463 8358813 -109503814 + MLT1A1 LTR MaLR 21 363 -2 222 217 29 43 chr9 8358932 8359001 -109503626 + CT-rich Low_complexity Low_complexity 4 71 0 337 393 17 6 chr9 8359001 8359179 -109503448 - L2 LINE L2 -1 3312 3133 360 246 129 23 chr9 8359727 8359947 -109502680 - MLT1K LTR MaLR -2 613 360 602 224 76 59 chr9 8359968 8360205 -109502422 - MIR SINE MIR -14 248 8 207 345 154 34 chr9 8362341 8362587 -109500040 + L2 LINE L2 1521 1736 -1578 1183 193 28 0 chr9 8362587 8362799 -109499828 - MER20 DNA MER1_type -1 218 1 207 345 154 34 chr9 8362799 8363532 -109499095 + L2 LINE L2 1736 2618 -696 1019 247 17 0 chr9 8364151 8364390 -109498237 - MIR SINE MIR 0 262 20 23 33 0 0 chr9 8364882 8364912 -109497715 + AT_rich Low_complexity Low_complexity 1 30 0 836 84 0 0 chr9 8365144 8365251 -109497376 + AluY SINE Alu 199 305 -6 352 234 117 7 chr9 8365292 8365437 -109497190 + L1ME4a LINE L1 5961 6121 0 523 255 50 32 chr9 8365589 8365787 -109496840 + MIR SINE MIR 18 220 -42 188 346 90 32 chr9 8366323 8366702 -109495925 - L2 LINE L2 -201 3071 2670 446 311 28 17 chr9 8366832 8367012 -109495615 - MIR SINE MIR 0 262 81 497 173 0 10 chr9 8367408 8367512 -109495115 + GA-rich Low_complexity Low_complexity 2 104 0 297 128 0 0 chr9 8367619 8367666 -109494961 + (T)n Simple_repeat Simple_repeat 1 47 0 244 247 53 94 chr9 8369391 8369561 -109493066 + LTR67 LTR ERVL 381 543 -14 214 239 15 15 chr9 8369667 8369734 -109492893 + (TA)n Simple_repeat Simple_repeat 2 68 0 204 179 0 0 chr9 8369851 8369890 -109492737 + T-rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr9 8370376 8370401 -109492226 + AT_rich Low_complexity Low_complexity 1 25 0 342 263 175 0 chr9 8370619 8370756 -109491871 - MIR SINE MIR -2 260 100 205 158 26 0 chr9 8371489 8371527 -109491100 + L2 LINE L2 3264 3302 -11 881 231 54 0 chr9 8374001 8374187 -109488440 + Tigger7 DNA MER2_type 7 202 -2285 717 278 27 0 chr9 8374402 8374625 -109488002 + Tigger7 DNA MER2_type 191 419 -314 627 149 90 70 chr9 8375384 8375585 -109487042 - MLT1C LTR MaLR -231 236 32 248 258 0 0 chr9 8376516 8376578 -109486049 - MER2 DNA MER2_type -1 344 283 239 290 0 0 chr9 8376554 8376623 -109486004 - MER8 DNA MER2_type -60 179 111 * 426 242 121 0 chr9 8376736 8376885 -109485742 + MLT1F1 LTR MaLR 1 167 -223 480 264 142 44 chr9 8377715 8378010 -109484617 + MLT1F1 LTR MaLR 244 567 0 651 199 20 5 chr9 8378398 8378563 -109484064 - MLT1A1 LTR MaLR -175 190 19 276 207 198 0 chr9 8378890 8379001 -109483626 + MLT1K LTR MaLR 431 563 -25 737 279 63 11 chr9 8380131 8380608 -109482019 - MER77 LTR ERV1 -4 601 58 234 176 0 39 chr9 8382349 8382400 -109480227 - L2 LINE L2 -5 3267 3219 2206 246 46 26 chr9 8383407 8383539 -109479088 + MER67C LTR ERV1 1 129 -581 2228 96 13 3 chr9 8383539 8383841 -109478786 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 8383841 8384404 -109478223 + MER67C LTR ERV1 129 710 0 2166 101 3 3 chr9 8385010 8385296 -109477331 + AluSg1 SINE Alu 1 286 -23 2068 111 47 65 chr9 8385475 8385694 -109476933 + MER51A LTR ERV1 1 222 -412 238 67 44 0 chr9 8385694 8385739 -109476888 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2130 125 0 20 chr9 8385742 8386046 -109476581 - AluSx SINE Alu -14 298 1 2068 111 47 65 chr9 8386046 8386372 -109476255 + MER51A LTR ERV1 224 634 0 2348 236 51 43 chr9 8386763 8387515 -109475112 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 8387515 8387790 -109474837 - AluJb SINE Alu -18 294 1 2348 236 51 43 chr9 8387790 8387801 -109474826 - L1M4 LINE L1 -2538 3608 3599 701 244 80 20 chr9 8387796 8387997 -109474630 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 8388239 8388315 -109474312 - L1MD2 LINE L1 -543 5699 5606 453 247 20 27 chr9 8388362 8388508 -109474119 - L1M4 LINE L1 -2587 3559 3415 257 304 47 70 chr9 8388743 8389000 -109473627 + MLT1-int LTR MaLR 1114 1364 -7 5768 18 0 0 chr9 8389206 8389883 -109472744 - L1PA3 LINE L1 -16 6139 5463 * 7184 36 18 0 chr9 8389880 8390863 -109471764 + L1PA4 LINE L1 5149 6147 -8 2276 67 7 24 chr9 8391003 8391301 -109471326 + AluY SINE Alu 1 293 -18 201 74 0 0 chr9 8391365 8391392 -109471235 + (TA)n Simple_repeat Simple_repeat 1 27 0 232 276 52 22 chr9 8391470 8391604 -109471023 - L1MC/D LINE L1 -1930 5878 5741 5488 72 3 0 chr9 8391760 8392468 -109470159 - L1PA7 LINE L1 -3 6151 5442 4834 156 41 1 chr9 8393171 8394172 -109468455 - L1PA16 LINE L1 -9 6157 5116 180 0 0 0 chr9 8394374 8394394 -109468233 + (T)n Simple_repeat Simple_repeat 1 20 0 369 316 20 94 chr9 8395554 8395798 -109466829 - L2 LINE L2 -3 3269 3044 421 262 121 7 chr9 8397201 8397342 -109465285 + MER5A DNA MER1_type 33 189 0 1999 133 0 3 chr9 8397843 8398129 -109464498 - AluJb SINE Alu -19 293 9 242 359 23 53 chr9 8400112 8400243 -109462384 + MIR SINE MIR 19 145 -63 191 326 102 0 chr9 8400445 8400543 -109462084 + MIR SINE MIR 152 259 -3 1788 77 151 4 chr9 8402037 8402296 -109460331 - AluY SINE Alu -3 298 2 301 257 38 0 chr9 8402612 8402717 -109459910 + MER103 DNA DNA 1 109 -57 23 0 0 0 chr9 8404190 8404213 -109458414 + AT_rich Low_complexity Low_complexity 1 23 0 295 284 40 14 chr9 8406333 8406407 -109456220 + MIR SINE MIR 32 107 -155 254 308 67 29 chr9 8407072 8407176 -109455451 - L2 LINE L2 -24 3289 3182 707 309 114 63 chr9 8408462 8409423 -109453204 + L2 LINE L2 2297 3313 0 2024 149 0 10 chr9 8409985 8410293 -109452334 - AluSx SINE Alu -3 309 5 24 0 0 0 chr9 8410507 8410531 -109452096 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr9 8410840 8410871 -109451756 + AT_rich Low_complexity Low_complexity 1 31 0 1369 189 70 83 chr9 8411262 8411744 -109450883 - LTR8 LTR ERV1 -215 476 1 2112 111 10 0 chr9 8411830 8412127 -109450500 - AluSq SINE Alu -12 301 2 1026 149 28 11 chr9 8413128 8413309 -109449318 + MER5A DNA MER1_type 6 189 0 468 147 138 0 chr9 8413364 8413473 -109449154 + MER53 DNA DNA 3 126 -63 1865 153 73 14 chr9 8415372 8415726 -109446901 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr9 8418433 8418455 -109444172 + AT_rich Low_complexity Low_complexity 1 22 0 5767 51 2 8 chr9 8418559 8419388 -109443239 + L1P LINE L1 2 953 -5193 240 267 120 0 chr9 8419514 8419589 -109443038 + MLT1J LTR MaLR 286 369 -142 360 350 87 15 chr9 8419709 8419915 -109442712 - MIR SINE MIR -41 221 1 519 294 120 45 chr9 8420773 8421174 -109441453 - MLT1H LTR MaLR 0 549 119 1492 312 57 40 chr9 8421266 8421972 -109440655 + L3 LINE CR1 761 1478 -99 182 176 0 0 chr9 8421993 8422027 -109440600 + MER5B DNA MER1_type 1 34 -144 327 49 0 0 chr9 8422239 8422280 -109440347 + (CA)n Simple_repeat Simple_repeat 2 42 0 181 267 109 30 chr9 8422333 8422434 -109440193 + L3 LINE CR1 1218 1326 -251 33 80 0 0 chr9 8423129 8423204 -109439423 + AT_rich Low_complexity Low_complexity 1 75 0 185 283 43 0 chr9 8423413 8423459 -109439168 + L2 LINE L2 1835 1882 -1432 210 241 60 60 chr9 8424353 8424436 -109438191 - MIR SINE MIR -56 206 124 1481 162 19 4 chr9 8424442 8424708 -109437919 + MLT1A1 LTR MaLR 1 270 -95 1157 170 75 0 chr9 8424848 8425089 -109437538 + L1MC3 LINE L1 7494 7752 -33 3203 266 44 20 chr9 8426127 8427544 -109435083 - L1M4 LINE L1 -1483 4899 3449 4040 168 29 20 chr9 8427721 8428069 -109434558 - L1MB5 LINE L1 0 6174 5830 1887 150 0 32 chr9 8428069 8428383 -109434244 - AluJb SINE Alu -8 304 1 4040 168 29 20 chr9 8428383 8428876 -109433751 - L1MB5 LINE L1 -344 5830 5326 1751 168 31 17 chr9 8428889 8429181 -109433446 - AluJb SINE Alu -16 296 1 1890 167 0 16 chr9 8429187 8429499 -109433128 - AluJo SINE Alu -5 307 1 1658 196 28 0 chr9 8429504 8429790 -109432837 - AluJb SINE Alu -18 294 1 821 236 41 20 chr9 8429847 8430190 -109432437 - L1M4 LINE L1 -4071 2313 1964 2322 111 17 37 chr9 8430374 8430778 -109431849 - HERVK9 LTR ERVK -5520 396 1 3189 125 2 6 chr9 8430778 8431275 -109431352 - MER9 LTR ERVK 0 511 17 7558 157 18 8 chr9 8431432 8432817 -109429810 + Tigger1 DNA MER2_type 1 1399 -1019 254 179 155 12 chr9 8432920 8433004 -109429623 - MER33 DNA MER1_type -224 100 5 200 309 49 81 chr9 8434038 8434161 -109428466 + L2 LINE L2 3187 3305 -8 407 330 59 39 chr9 8435632 8435835 -109426792 - MIR SINE MIR -7 255 49 320 284 60 49 chr9 8436020 8436203 -109426424 + MLT1J LTR MaLR 6 190 -321 221 147 0 0 chr9 8436305 8436339 -109426288 + (GA)n Simple_repeat Simple_repeat 2 35 0 224 182 0 18 chr9 8436340 8436395 -109426232 + GA-rich Low_complexity Low_complexity 1 54 0 1382 229 93 26 chr9 8436401 8436858 -109425769 - MLT2B1 LTR ERVL -20 534 1 265 302 63 32 chr9 8436864 8436990 -109425637 + MLT1J LTR MaLR 382 511 0 209 365 81 0 chr9 8437220 8437294 -109425333 + L2 LINE L2 2970 3049 -223 310 374 36 12 chr9 8437735 8437901 -109424726 - L1ME3A LINE L1 -273 5897 5728 243 211 33 0 chr9 8437977 8438067 -109424560 + (TA)n Simple_repeat Simple_repeat 1 93 0 500 304 87 42 chr9 8438090 8438445 -109424182 - L1M3 LINE L1 -520 5642 5272 2076 259 10 19 chr9 8439557 8440071 -109422556 - MLT1F LTR MaLR -6 536 28 2398 177 18 11 chr9 8440421 8440861 -109421766 + L1PA13 LINE L1 2 444 -6343 368 95 16 32 chr9 8440961 8441024 -109421603 - MER30 DNA MER1_type -162 68 7 3993 118 3 0 chr9 8441030 8441608 -109421019 + Tigger1 DNA MER2_type 1461 2040 -378 288 243 0 0 chr9 8442497 8442571 -109420056 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 268 338 110 15 chr9 8442727 8442863 -109419764 - MIR SINE MIR -109 153 5 380 145 0 0 chr9 8443187 8443249 -109419378 + MSTB1 LTR MaLR 344 405 -27 471 281 99 18 chr9 8443440 8443611 -109419016 - L2 LINE L2 -40 3273 3089 863 183 91 6 chr9 8443613 8443788 -109418839 + MER58A DNA MER1_type 25 214 -10 483 273 107 0 chr9 8443797 8443947 -109418680 - L2 LINE L2 -504 2810 2645 1297 86 15 40 chr9 8443947 8444145 -109418482 - MER30 DNA MER1_type -37 193 1 840 321 11 4 chr9 8444265 8444542 -109418085 - L2 LINE L2 -861 2453 2175 216 0 0 0 chr9 8444544 8444568 -109418059 + (T)n Simple_repeat Simple_repeat 1 24 0 189 216 0 0 chr9 8444869 8444906 -109417721 - MIR SINE MIR -3 259 223 5561 65 39 0 chr9 8445251 8445988 -109416639 + L1PA7 LINE L1 5386 6151 -3 265 276 52 22 chr9 8446144 8446278 -109416349 + L1MC/D LINE L1 5741 5878 -1930 201 74 0 0 chr9 8446356 8446383 -109416244 + (TA)n Simple_repeat Simple_repeat 1 27 0 1866 62 8 29 chr9 8446447 8446691 -109415936 - AluY SINE Alu -18 293 55 7073 181 13 21 chr9 8446791 8448987 -109413640 + L1PA13 LINE L1 3944 6145 -18 779 251 0 26 chr9 8449024 8449215 -109413412 + AluJb SINE Alu 127 312 0 645 274 88 18 chr9 8449502 8449842 -109412785 + L1ME3A LINE L1 4037 4400 -1746 1100 278 168 10 chr9 8449852 8450435 -109412192 + L1ME3A LINE L1 4573 5247 -899 2305 246 71 24 chr9 8450508 8451062 -109411565 + L1ME3A LINE L1 5274 5883 -287 782 230 99 5 chr9 8451062 8451253 -109411374 - MER63A DNA MER1_type -1 209 1 2305 246 71 24 chr9 8451253 8451547 -109411080 + L1ME3A LINE L1 5883 6162 -8 905 191 12 0 chr9 8451602 8451764 -109410863 - MER58B DNA MER1_type -5 336 173 240 289 45 58 chr9 8451833 8451989 -109410638 - MIR3 SINE MIR -25 183 30 890 170 105 0 chr9 8452957 8453128 -109409499 - MER5A DNA MER1_type 0 189 1 616 174 232 7 chr9 8453392 8453530 -109409097 + MER45A DNA AcHobo 1 169 -9 342 275 0 0 chr9 8453556 8453636 -109408991 + L2 LINE L2 3234 3313 0 395 330 16 68 chr9 8453692 8453883 -109408744 - MER5A DNA MER1_type -2 187 7 180 378 14 0 chr9 8453981 8454055 -109408572 + L2 LINE L2 2980 3054 -218 872 359 87 11 chr9 8454125 8454654 -109407973 + MLT1K LTR MaLR 17 585 -3 219 277 117 51 chr9 8455402 8455539 -109407088 - L2 LINE L2 -2 3311 3166 3382 133 57 25 chr9 8456003 8456636 -109405991 + MER39B LTR ERV1 1 653 0 23 54 0 0 chr9 8457467 8457504 -109405123 + AT_rich Low_complexity Low_complexity 1 37 0 592 191 0 116 chr9 8457807 8457890 -109404737 - L1MA9 LINE L1 -32 6280 6231 2232 90 0 0 chr9 8457890 8458204 -109404423 + AluSc SINE Alu 3 316 0 592 191 0 116 chr9 8458204 8458318 -109404309 - L1MA9 LINE L1 -81 6231 6105 583 76 0 0 chr9 8458688 8458818 -109403809 - AluSg/x SINE Alu 0 333 204 268 250 0 0 chr9 8459750 8459810 -109402817 + Charlie8 DNA MER1_type 1357 1416 -1001 1879 181 25 27 chr9 8460146 8460554 -109402073 - L1MA10 LINE L1 -13 6321 5915 6579 22 3 0 chr9 8460687 8461449 -109401178 - L1PA3 LINE L1 -1 6154 5391 303 167 24 60 chr9 8461558 8461642 -109400985 + L1M4 LINE L1 2896 2976 -3170 2334 95 0 0 chr9 8461994 8462288 -109400339 + AluSx SINE Alu 3 296 -16 5286 56 0 2 chr9 8462306 8462950 -109399677 + HERVL LTR ERVL 2034 2676 -2978 974 247 126 40 chr9 8463231 8463908 -109398719 - L1MEc LINE L1 -4813 1583 849 1333 275 61 7 chr9 8463926 8464369 -109398258 - L1MEc LINE L1 -5640 756 290 187 336 101 40 chr9 8464369 8464518 -109398109 - MER5A DNA MER1_type -16 173 16 208 352 66 9 chr9 8464709 8464902 -109397725 + MIR SINE MIR 18 221 -41 387 324 101 26 chr9 8464995 8465301 -109397326 - HAL1 LINE L1 -1353 1154 826 780 179 0 22 chr9 8465601 8465785 -109396842 + CT-rich Low_complexity Low_complexity 1 180 0 1909 161 0 13 chr9 8466285 8466590 -109396037 + AluJb SINE Alu 3 303 -9 243 204 0 0 chr9 8466913 8466967 -109395660 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 2374 100 0 0 chr9 8467392 8467702 -109394925 + AluSx SINE Alu 1 310 -2 400 357 78 0 chr9 8468955 8469109 -109393518 - L2 LINE L2 -1 3271 3106 518 243 41 18 chr9 8469231 8469663 -109392964 + LTR33 LTR ERVL 3 521 0 228 195 0 0 chr9 8469888 8469929 -109392698 + MER34 LTR ERV1 6 46 -496 1491 187 127 19 chr9 8469987 8470356 -109392271 + MER39 LTR ERV1 290 698 -9 1938 227 38 47 chr9 8470399 8470975 -109391652 + MLT1E3 LTR MaLR 4 574 -50 1092 173 25 0 chr9 8471260 8471457 -109391170 + MER3 DNA MER1_type 3 204 -5 3109 131 15 27 chr9 8471556 8471963 -109390664 - L1PA16 LINE L1 0 6166 5766 180 0 0 0 chr9 8471963 8471983 -109390644 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 3109 131 15 27 chr9 8471983 8472124 -109390503 - L1PA16 LINE L1 -400 5766 5625 22 0 0 0 chr9 8472159 8472181 -109390446 + AT_rich Low_complexity Low_complexity 1 22 0 211 350 114 24 chr9 8472391 8472514 -109390113 + MIR3 SINE MIR 13 146 -62 22 35 0 0 chr9 8472729 8472758 -109389869 + AT_rich Low_complexity Low_complexity 1 29 0 1959 219 16 26 chr9 8473203 8473628 -109388999 - MER74B LTR ERVL -26 596 176 566 186 9 9 chr9 8473679 8473792 -109388835 - MER74A LTR ERVL -445 113 1 262 306 86 27 chr9 8473805 8474027 -109388600 + L1MC4 LINE L1 5614 5848 -1960 875 173 21 37 chr9 8474384 8474575 -109388052 - MER5A DNA MER1_type 0 189 2 198 0 0 0 chr9 8475685 8475707 -109386920 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 38668 40 6 0 chr9 8475707 8481192 -109381435 - L1PA4 LINE L1 -16 6139 623 823 51 0 0 chr9 8481190 8481288 -109381339 - L1PA4 LINE L1 -6048 98 1 * 288 169 15 0 chr9 8481684 8481749 -109380878 - MADE1 DNA Mariner -1 79 14 355 365 76 25 chr9 8485329 8485606 -109377021 - L2 LINE L2 -5 3267 2977 407 312 153 27 chr9 8486846 8487218 -109375409 + MLT1L LTR MaLR 143 561 -54 999 228 97 28 chr9 8487476 8487949 -109374678 - Charlie4a DNA MER1_type 0 508 3 346 232 61 0 chr9 8488764 8488846 -109373781 + L1MC4 LINE L1 6617 6703 -1339 333 0 0 0 chr9 8488858 8488895 -109373732 + (GA)n Simple_repeat Simple_repeat 2 38 0 326 208 78 0 chr9 8489411 8489488 -109373139 + L1MC4 LINE L1 6621 6703 -1339 333 0 0 0 chr9 8489500 8489537 -109373090 + (GA)n Simple_repeat Simple_repeat 2 38 0 2728 231 44 5 chr9 8490220 8490973 -109371654 + L1ME1 LINE L1 3981 4762 -1384 2015 129 0 0 chr9 8491626 8491905 -109370722 + AluSx SINE Alu 1 279 -33 249 108 0 0 chr9 8491905 8491942 -109370685 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 841 271 48 36 chr9 8492353 8492604 -109370023 + MIR SINE MIR 8 261 -1 2198 193 48 51 chr9 8492656 8493441 -109369186 + L1ME1 LINE L1 4801 5621 -545 449 213 0 0 chr9 8493441 8493521 -109369106 + AluJ/FLAM SINE Alu 5 84 -228 2198 193 48 51 chr9 8493521 8493771 -109368856 + L1ME1 LINE L1 5621 5870 -296 3718 172 18 1 chr9 8493773 8494935 -109367692 - L1M2 LINE L1 -490 5822 4647 191 329 96 0 chr9 8494960 8495033 -109367594 - MIR SINE MIR -109 153 74 191 388 36 24 chr9 8495395 8495560 -109367067 + L2 LINE L2 2887 3053 -219 392 324 71 24 chr9 8497171 8497341 -109365286 + MER5B DNA MER1_type 1 178 0 233 94 0 0 chr9 8497825 8497857 -109364770 - L2 LINE L2 -259 3054 3023 190 303 0 15 chr9 8497869 8497935 -109364692 + L2 LINE L2 3249 3313 0 230 299 55 24 chr9 8498041 8498168 -109364459 - L2 LINE L2 -481 2833 2703 1010 249 155 22 chr9 8498215 8498661 -109363966 - L2 LINE L2 -590 2724 2220 207 241 12 60 chr9 8498707 8498790 -109363837 + CT-rich Low_complexity Low_complexity 5 83 0 252 203 34 17 chr9 8498908 8498967 -109363660 + MIR SINE MIR 82 141 -67 2101 221 21 0 chr9 8499245 8499712 -109362915 + LTR53 LTR ERVL 1 477 -42 1841 125 3 42 chr9 8499727 8500014 -109362613 + AluSq SINE Alu 1 276 -37 693 194 17 6 chr9 8500016 8500191 -109362436 + GA-rich Low_complexity Low_complexity 3 179 0 2271 85 0 10 chr9 8500232 8500526 -109362101 - AluY SINE Alu -20 291 1 2161 112 3 38 chr9 8500526 8500840 -109361787 - AluSx SINE Alu -1 311 9 384 306 113 22 chr9 8500844 8501066 -109361561 + MLT1I LTR MaLR 150 391 -18 776 180 97 44 chr9 8501336 8501542 -109361085 - MER20 DNA MER1_type -2 217 1 2100 94 42 7 chr9 8502349 8502636 -109359991 + AluSc SINE Alu 1 297 -12 24 0 0 0 chr9 8504333 8504357 -109358270 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 0 45 chr9 8504488 8504554 -109358073 + L2 LINE L2 3249 3311 -2 412 240 50 0 chr9 8505573 8505673 -109356954 - L2 LINE L2 -4 3309 3205 * 1553 278 42 24 chr9 8505671 8506168 -109356459 - L2 LINE L2 -500 2814 2309 288 327 137 29 chr9 8506192 8506470 -109356157 - L2 LINE L2 -1 3312 3005 1487 127 27 0 chr9 8506501 8506722 -109355905 + MER30 DNA MER1_type 4 230 0 251 121 52 0 chr9 8507748 8507806 -109354821 + HSMAR1 DNA Mariner 1227 1287 0 319 261 8 75 chr9 8509833 8509967 -109352660 + MIR SINE MIR 88 212 -50 296 244 9 61 chr9 8510916 8511031 -109351596 + MLT1L LTR MaLR 387 495 -120 230 340 29 10 chr9 8511108 8511211 -109351416 + L2 LINE L2 3181 3285 -28 189 0 0 0 chr9 8511407 8511428 -109351199 + (T)n Simple_repeat Simple_repeat 1 21 0 282 250 100 0 chr9 8512489 8512589 -109350038 - L1ME LINE L1 -381 5740 5631 2250 121 36 33 chr9 8513647 8514010 -109348617 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr9 8516028 8516060 -109346567 + AT_rich Low_complexity Low_complexity 1 32 0 533 309 104 17 chr9 8516203 8516433 -109346194 + MIR SINE MIR 12 261 -1 196 293 0 35 chr9 8516915 8516973 -109345654 + MER5A DNA MER1_type 45 100 -89 215 179 0 0 chr9 8516991 8517030 -109345597 + L2 LINE L2 3257 3295 -18 2012 151 0 3 chr9 8517223 8517527 -109345100 + AluSx SINE Alu 1 303 -9 978 70 0 56 chr9 8517529 8517672 -109344955 + AluY SINE Alu 175 309 -2 216 0 0 0 chr9 8518052 8518076 -109344551 + (A)n Simple_repeat Simple_repeat 1 24 0 216 240 133 93 chr9 8519218 8519368 -109343259 + MER5A DNA MER1_type 34 189 0 324 93 19 0 chr9 8519441 8519495 -109343132 - L1PB2 LINE L1 -2 6149 6095 503 265 7 52 chr9 8519498 8519564 -109343063 - L2 LINE L2 -9 3263 3204 1725 208 43 41 chr9 8519564 8520030 -109342597 - MLT1C LTR MaLR 0 467 1 503 265 7 52 chr9 8520030 8520099 -109342528 - L2 LINE L2 -68 3204 3134 211 292 150 0 chr9 8521001 8521114 -109341513 - MIR SINE MIR -5 257 128 23 33 0 0 chr9 8522324 8522354 -109340273 + AT_rich Low_complexity Low_complexity 1 30 0 330 383 6 16 chr9 8523021 8523204 -109339423 + MIR SINE MIR 8 188 -74 459 254 47 41 chr9 8524697 8524755 -109337872 - LTR67 LTR ERVL -293 264 208 1522 105 0 0 chr9 8524755 8524955 -109337672 - AluSg/x SINE Alu -2 310 111 459 254 47 41 chr9 8524955 8525065 -109337562 - LTR67 LTR ERVL -349 208 95 207 0 0 0 chr9 8525080 8525103 -109337524 + (A)n Simple_repeat Simple_repeat 1 23 0 2952 271 105 56 chr9 8525225 8526016 -109336611 + L2 LINE L2 1511 2393 -921 2316 77 10 3 chr9 8526016 8526315 -109336312 + AluSg SINE Alu 1 301 -9 2952 271 105 56 chr9 8526315 8526839 -109335788 + L2 LINE L2 2393 2890 -424 186 194 0 0 chr9 8527057 8527088 -109335539 - L2 LINE L2 -23 3249 3219 2438 91 0 0 chr9 8527421 8527730 -109334897 + AluSc SINE Alu 1 309 0 318 26 0 0 chr9 8528117 8528156 -109334471 + (CA)n Simple_repeat Simple_repeat 2 40 0 224 307 40 0 chr9 8528346 8528421 -109334206 - MIR SINE MIR -14 248 171 323 217 17 104 chr9 8530274 8530389 -109332238 - MIR SINE MIR -108 154 50 1922 128 45 0 chr9 8530639 8530928 -109331699 + AluSg SINE Alu 1 302 -8 428 222 126 29 chr9 8530976 8531183 -109331444 - HAL1 LINE L1 -5 2502 2276 581 290 80 8 chr9 8531259 8531497 -109331130 - L2 LINE L2 0 3313 3059 1929 228 120 86 chr9 8531497 8532815 -109329812 - HAL1 LINE L1 -331 2176 814 2579 52 3 0 chr9 8533197 8533505 -109329122 - AluY SINE Alu -2 309 1 216 200 0 0 chr9 8533758 8533803 -109328824 + (TA)n Simple_repeat Simple_repeat 1 45 0 235 0 0 54 chr9 8535646 8535683 -109326944 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 233 330 28 28 chr9 8536455 8536561 -109326066 + L2 LINE L2 3158 3263 -50 322 282 101 32 chr9 8536899 8537026 -109325601 - MER5B DNA MER1_type -39 150 5 195 329 53 26 chr9 8537316 8537392 -109325235 - MIR SINE MIR -162 100 23 353 330 98 15 chr9 8538197 8538400 -109324227 - MIR SINE MIR -34 228 9 650 255 51 23 chr9 8538965 8539199 -109323428 - MIR SINE MIR -23 239 3 188 35 35 0 chr9 8540865 8540894 -109321733 + (TAA)n Simple_repeat Simple_repeat 1 30 0 279 288 68 38 chr9 8542690 8542822 -109319805 - L2 LINE L2 0 3272 3137 370 299 149 8 chr9 8544519 8544653 -109317974 - MER5A DNA MER1_type -6 183 31 414 226 66 9 chr9 8545632 8545738 -109316889 + MER117 DNA MER1_type 7 118 -79 306 270 45 0 chr9 8545926 8546015 -109316612 - L2 LINE L2 0 3313 3221 9143 213 39 25 chr9 8547186 8548977 -109313650 - L1MC1 LINE L1 0 6333 4569 2474 62 0 0 chr9 8548977 8549292 -109313335 + AluSc SINE Alu 1 315 0 9143 213 39 25 chr9 8549292 8551311 -109311316 - L1MC1 LINE L1 -1764 4569 2460 1949 166 77 0 chr9 8551717 8552055 -109310572 - THE1B LTR MaLR 0 364 1 11437 103 5 2 chr9 8552055 8553630 -109308997 - THE1B-int LTR MaLR 0 1580 1 2058 108 108 15 chr9 8553630 8553963 -109308664 - THE1B LTR MaLR 0 364 1 283 294 49 10 chr9 8554256 8554358 -109308269 - MIR SINE MIR -94 168 63 885 242 67 8 chr9 8554497 8554737 -109307890 - L1PA16 LINE L1 0 6172 5921 474 287 84 0 chr9 8555177 8555320 -109307307 + MIR SINE MIR 89 243 -19 288 274 168 9 chr9 8555329 8555442 -109307185 - MER94 DNA DNA -1 133 3 589 316 92 5 chr9 8556487 8556693 -109305934 + MIR SINE MIR 29 252 -10 497 309 48 30 chr9 8556945 8557110 -109305517 - MIR SINE MIR -77 185 18 325 375 8 0 chr9 8557462 8557582 -109305045 - MIR SINE MIR -65 143 23 198 0 0 0 chr9 8557949 8557971 -109304656 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 1166 212 29 67 chr9 8559489 8559880 -109302747 + MLT1B LTR MaLR 1 342 -32 403 331 73 17 chr9 8560315 8560402 -109302225 + MIR SINE MIR 65 146 -116 1612 171 72 17 chr9 8560402 8560748 -109301879 - MLT1A1 LTR MaLR 0 365 1 403 331 73 17 chr9 8560748 8560838 -109301789 + MIR SINE MIR 146 252 -10 280 310 80 10 chr9 8561416 8561516 -109301111 - MIR SINE MIR -72 190 84 369 198 0 47 chr9 8562275 8562361 -109300266 - MIR SINE MIR -5 257 176 980 273 112 12 chr9 8562863 8563281 -109299346 + LTR16B LTR ERVL 1 460 -4 21 0 0 0 chr9 8564338 8564359 -109298268 + AT_rich Low_complexity Low_complexity 1 21 0 928 186 60 5 chr9 8565591 8565790 -109296837 + MER6B DNA MER2_type 1 210 0 2328 192 29 5 chr9 8566164 8566571 -109296056 + MLT2C2 LTR ERVL 7 427 -37 432 0 0 0 chr9 8566571 8566619 -109296008 + (CA)n Simple_repeat Simple_repeat 2 49 0 2328 192 29 5 chr9 8566619 8566658 -109295969 + MLT2C2 LTR ERVL 427 464 0 323 106 0 0 chr9 8567646 8567693 -109294934 - L2 LINE L2 0 3313 3267 2894 6 0 6 chr9 8567838 8568158 -109294469 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr9 8569592 8569614 -109293013 + AT_rich Low_complexity Low_complexity 1 22 0 2023 151 137 11 chr9 8570596 8570961 -109291666 + MSTA LTR MaLR 18 428 0 652 139 9 0 chr9 8570961 8571069 -109291558 + MSTA-int LTR MaLR 1 109 -1542 * 1779 128 7 14 chr9 8571064 8571354 -109291273 + MSTA-int LTR MaLR 1293 1580 0 2217 144 105 5 chr9 8571354 8571743 -109290884 + MSTA LTR MaLR 1 428 0 1090 278 86 24 chr9 8572250 8572621 -109290006 - MLT1J1 LTR MaLR -45 401 8 326 298 35 26 chr9 8573868 8573982 -109288645 - LTR67 LTR ERVL -6 551 437 1867 165 71 10 chr9 8574342 8574736 -109287891 + LTR52 LTR ERVL 1 418 -3 181 191 0 29 chr9 8575428 8575496 -109287131 + GA-rich Low_complexity Low_complexity 3 68 0 245 295 0 108 chr9 8575669 8575808 -109286819 - L3 LINE CR1 -21 1556 1433 229 402 21 0 chr9 8577597 8577694 -109284933 - MIR SINE MIR -142 120 22 355 240 88 2 chr9 8577944 8578063 -109284564 - MIR SINE MIR -67 141 13 295 312 65 14 chr9 8578100 8578238 -109284389 + MIR SINE MIR 67 211 -51 1069 202 10 5 chr9 8578586 8578794 -109283833 + MER2 DNA MER2_type 2 210 -135 23 54 0 0 chr9 8578804 8578841 -109283786 + AT_rich Low_complexity Low_complexity 1 37 0 353 269 67 10 chr9 8578933 8579037 -109283590 - MIR SINE MIR -102 160 51 7144 216 91 22 chr9 8579072 8579520 -109283107 - L1MB3 LINE L1 -2 6417 6001 2492 162 16 2 chr9 8579520 8579946 -109282681 + MSTB1 LTR MaLR 1 432 0 7144 216 91 22 chr9 8579946 8581209 -109281418 - L1MB3 LINE L1 -418 6001 4826 2065 132 0 0 chr9 8581209 8581520 -109281107 - AluSc SINE Alu 0 311 1 7144 216 91 22 chr9 8581520 8582581 -109280046 - L1MB3 LINE L1 -1593 4826 3839 1676 146 0 4 chr9 8582581 8582828 -109279799 - AluSx SINE Alu -66 246 1 7144 216 91 22 chr9 8582828 8584802 -109277825 - L1MB3 LINE L1 -2580 3839 1340 857 211 43 24 chr9 8584809 8585017 -109277610 + AluJo SINE Alu 84 295 -17 5375 172 147 18 chr9 8585039 8586207 -109276420 - L1MB3 LINE L1 -5044 1340 22 198 0 0 0 chr9 8586753 8586775 -109275852 + (T)n Simple_repeat Simple_repeat 1 22 0 212 328 0 0 chr9 8586936 8586997 -109275630 - L3b LINE CR1 -243 1340 1280 1187 321 80 5 chr9 8587288 8587874 -109274753 - L1ME3A LINE L1 -258 5981 5352 1710 263 94 22 chr9 8587900 8588890 -109273737 - L1ME3A LINE L1 -2814 3401 2341 316 298 123 6 chr9 8588928 8589099 -109273528 - L1ME3A LINE L1 -4093 2303 2113 21 0 0 0 chr9 8589278 8589299 -109273328 + AT_rich Low_complexity Low_complexity 1 21 0 364 208 28 176 chr9 8590331 8590547 -109272080 + MLT1K LTR MaLR 399 582 -6 323 335 112 6 chr9 8590560 8590739 -109271888 + L2 LINE L2 3116 3313 0 180 250 264 0 chr9 8590962 8591034 -109271593 + MIR SINE MIR 80 170 -92 241 224 0 59 chr9 8591552 8591637 -109270990 + A-rich Low_complexity Low_complexity 5 84 0 211 216 0 0 chr9 8592548 8592599 -109270028 + T-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 8593542 8593563 -109269064 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 8596434 8596459 -109266168 + AT_rich Low_complexity Low_complexity 1 25 0 281 197 28 0 chr9 8596475 8596546 -109266081 - MER116 DNA Mariner -7 73 1 220 256 0 0 chr9 8598060 8598103 -109264524 + L3 LINE CR1 1524 1566 -11 243 0 0 0 chr9 8598388 8598415 -109264212 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 360 0 0 0 chr9 8598414 8598454 -109264173 + (TA)n Simple_repeat Simple_repeat 1 40 0 12214 125 21 60 chr9 8598732 8601033 -109261594 + Tigger1 DNA MER2_type 3 2214 -204 28888 113 28 38 chr9 8601033 8607241 -109255386 - L1PA7 LINE L1 -3 6151 13 814 133 109 24 chr9 8607250 8607415 -109255212 + Tigger1 DNA MER2_type 2240 2418 0 213 308 165 0 chr9 8607571 8607662 -109254965 - MIR SINE MIR -72 136 31 22011 80 36 11 chr9 8610336 8614511 -109248116 + L1PA7 LINE L1 1852 6132 -22 194 0 0 37 chr9 8616023 8616050 -109246577 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 230 296 11 45 chr9 8616152 8616240 -109246387 + L2 LINE L2 3229 3313 0 186 299 86 34 chr9 8621612 8621729 -109240898 + MIR SINE MIR 34 156 -106 265 213 0 0 chr9 8622094 8622141 -109240486 + L2 LINE L2 3214 3260 -12 193 243 272 10 chr9 8622971 8623074 -109239553 + L2 LINE L2 2364 2493 -821 548 175 171 25 chr9 8623191 8623287 -109239340 - MER63B DNA MER1_type -750 310 229 4295 157 28 6 chr9 8623287 8624001 -109238626 + MER44D DNA MER2_type 2 603 -2 548 175 171 25 chr9 8624001 8624147 -109238480 - MER63B DNA MER1_type -831 229 7 415 252 118 30 chr9 8624257 8624392 -109238235 - L2 LINE L2 -8 3305 3159 1682 187 38 51 chr9 8624483 8624878 -109237749 + MLT1B LTR MaLR 1 390 0 372 327 57 39 chr9 8625148 8625533 -109237094 - HAL1b LINE L1 -659 689 298 184 330 174 0 chr9 8625610 8625725 -109236902 + L2 LINE L2 2901 3035 -237 34 24 0 0 chr9 8625937 8625978 -109236649 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr9 8626832 8626854 -109235773 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 8627661 8627696 -109234931 + AT_rich Low_complexity Low_complexity 1 35 0 653 275 67 22 chr9 8627789 8628058 -109234569 + L1MC4a LINE L1 5563 5843 -1965 270 0 0 0 chr9 8628641 8628671 -109233956 + (A)n Simple_repeat Simple_repeat 1 30 0 237 277 0 15 chr9 8629409 8629474 -109233153 - MER91 DNA MER1_type 0 140 77 2355 99 0 0 chr9 8629731 8630033 -109232594 + AluSc SINE Alu 3 304 -5 255 31 0 0 chr9 8630316 8630348 -109232279 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1905 134 0 14 chr9 8630348 8630632 -109231995 - AluSx SINE Alu -32 280 1 894 137 0 0 chr9 8630716 8630862 -109231765 + (TA)n Simple_repeat Simple_repeat 2 147 0 836 80 0 0 chr9 8630863 8630963 -109231664 - AluSc SINE Alu -17 292 193 28 86 0 0 chr9 8630964 8631034 -109231593 + AT_rich Low_complexity Low_complexity 1 70 0 1564 179 74 23 chr9 8631896 8632247 -109230380 + MSTB LTR MaLR 1 369 -57 225 318 38 23 chr9 8632619 8632751 -109229876 + MER5A DNA MER1_type 31 164 -25 * 592 250 7 0 chr9 8632639 8632779 -109229848 - MER5A DNA MER1_type -40 149 9 246 263 123 35 chr9 8635372 8635486 -109227141 + MIR SINE MIR 57 180 -82 2546 28 0 3 chr9 8635745 8636036 -109226591 + AluY SINE Alu 22 311 0 293 221 42 63 chr9 8636046 8636088 -109226539 - MIR3 SINE MIR -5 203 162 892 154 15 67 chr9 8636088 8636220 -109226407 + MER5A DNA MER1_type 3 123 -66 1789 179 0 29 chr9 8636220 8636532 -109226095 - AluSx SINE Alu -9 303 1 892 154 15 67 chr9 8636532 8636594 -109226033 + MER5A DNA MER1_type 123 187 -2 293 221 42 63 chr9 8636594 8636646 -109225981 - MIR3 SINE MIR -46 162 111 304 194 233 0 chr9 8637717 8637820 -109224807 - MER103 DNA DNA -37 129 3 300 135 54 27 chr9 8638608 8638682 -109223945 + L1MC5 LINE L1 7832 7907 -54 25 0 0 0 chr9 8642031 8642056 -109220571 + AT_rich Low_complexity Low_complexity 1 25 0 416 216 165 44 chr9 8642516 8642735 -109219892 + MLT1H LTR MaLR 4 292 -257 370 209 90 37 chr9 8642775 8642909 -109219718 + MLT1H LTR MaLR 405 545 -4 661 268 34 43 chr9 8643684 8644009 -109218618 - MARNA DNA Mariner -9 577 256 789 245 38 5 chr9 8644216 8644428 -109218199 + MER20 DNA MER1_type 1 219 0 687 283 35 10 chr9 8644709 8644907 -109217720 - MIR SINE MIR -10 252 50 337 338 27 34 chr9 8645089 8645237 -109217390 + MIR SINE MIR 50 196 -66 291 114 0 0 chr9 8647093 8647137 -109215490 + (CA)n Simple_repeat Simple_repeat 1 44 0 229 146 0 49 chr9 8647310 8647351 -109215276 + MIR SINE MIR 80 118 -144 342 311 37 31 chr9 8647732 8647893 -109214734 + MIR SINE MIR 63 224 -38 673 282 64 37 chr9 8649232 8649485 -109213142 - MIR SINE MIR -2 260 4 396 0 0 0 chr9 8650506 8650550 -109212077 + (TG)n Simple_repeat Simple_repeat 2 45 0 414 57 0 0 chr9 8650698 8650751 -109211876 + (TATG)n Simple_repeat Simple_repeat 4 56 0 * 677 54 21 0 chr9 8650750 8650843 -109211784 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 363 23 0 0 chr9 8651021 8651065 -109211562 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 8651358 8651379 -109211248 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 8652149 8652184 -109210443 + AT_rich Low_complexity Low_complexity 1 35 0 341 310 70 16 chr9 8656835 8656964 -109205663 + MIR SINE MIR 127 262 0 236 298 43 21 chr9 8657066 8657160 -109205467 - L2 LINE L2 -9 3263 3168 26 30 0 0 chr9 8657572 8657605 -109205022 + AT_rich Low_complexity Low_complexity 1 33 0 2155 117 7 0 chr9 8661436 8661735 -109200892 - AluSp SINE Alu -12 301 1 1458 188 49 10 chr9 8662152 8662440 -109200187 + AluJo SINE Alu 1 299 -13 420 272 136 19 chr9 8663002 8663164 -109199463 - MIR SINE MIR -59 203 23 562 291 11 11 chr9 8664530 8664709 -109197918 + MIR SINE MIR 2 180 -82 189 74 0 0 chr9 8665893 8665920 -109196707 + (T)n Simple_repeat Simple_repeat 1 27 0 441 254 113 7 chr9 8666780 8666922 -109195705 - MIR SINE MIR -60 202 46 484 281 135 23 chr9 8667002 8667262 -109195365 + L2 LINE L2 2606 2894 -420 473 296 196 39 chr9 8667611 8668020 -109194607 + L3 LINE CR1 1090 1562 -15 828 159 16 0 chr9 8669019 8669145 -109193482 + AluJb SINE Alu 7 134 -178 1467 202 10 17 chr9 8669158 8669450 -109193177 + AluJo SINE Alu 6 295 -17 186 294 88 15 chr9 8670626 8670694 -109191933 - MIR3 SINE MIR -18 190 118 320 378 7 13 chr9 8671404 8671555 -109191072 + MIR3 SINE MIR 41 190 -18 203 220 55 88 chr9 8673035 8673126 -109189501 + MIR SINE MIR 119 206 -56 715 233 61 0 chr9 8675079 8675242 -109187385 - MIR SINE MIR 0 262 90 1402 179 23 101 chr9 8675423 8675819 -109186808 + MLT1A1 LTR MaLR 1 365 0 271 336 38 15 chr9 8676743 8676874 -109185753 + MIR SINE MIR 41 174 -88 385 257 88 61 chr9 8677565 8677714 -109184913 + MIR3 SINE MIR 9 161 -68 218 246 228 0 chr9 8677821 8677878 -109184749 - MIR SINE MIR -69 139 70 989 172 0 0 chr9 8678073 8678230 -109184397 - AluJb SINE Alu -11 301 145 26 0 0 0 chr9 8679750 8679776 -109182851 + AT_rich Low_complexity Low_complexity 1 26 0 2214 99 0 20 chr9 8681036 8681339 -109181288 - AluSx SINE Alu -15 297 1 242 242 8 42 chr9 8682213 8682333 -109180294 + T-rich Low_complexity Low_complexity 2 117 0 230 337 191 13 chr9 8683161 8683464 -109179163 + L2 LINE L2 2429 2785 -529 322 261 109 25 chr9 8684146 8684265 -109178362 - MIR SINE MIR -30 232 104 191 192 58 39 chr9 8684260 8684312 -109178315 - L2 LINE L2 -4 3309 3257 * 209 338 39 0 chr9 8684320 8684397 -109178230 - MIR SINE MIR -155 107 28 737 325 49 0 chr9 8686027 8686270 -109176357 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 8688172 8688210 -109174417 + AT_rich Low_complexity Low_complexity 1 38 0 2050 137 13 0 chr9 8688211 8688510 -109174117 - AluSx SINE Alu -5 307 5 622 177 0 54 chr9 8689032 8689162 -109173465 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 8691103 8691128 -109171499 + AT_rich Low_complexity Low_complexity 1 25 0 285 291 34 34 chr9 8691269 8691386 -109171241 + Tigger8 DNA MER2_type 127 243 -423 490 219 10 0 chr9 8691558 8691654 -109170973 - MER94 DNA DNA -35 99 3 237 65 0 0 chr9 8691780 8691811 -109170816 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 506 29 0 14 chr9 8691915 8691984 -109170643 + (GA)n Simple_repeat Simple_repeat 1 68 0 22 0 0 0 chr9 8692471 8692493 -109170134 + AT_rich Low_complexity Low_complexity 1 22 0 266 262 85 37 chr9 8693292 8693456 -109169171 + L1ME4a LINE L1 5933 6104 -17 558 286 5 46 chr9 8693798 8693994 -109168633 - MIR SINE MIR -70 192 5 1122 186 12 39 chr9 8695999 8696257 -109166370 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 8696552 8696573 -109166054 + AT_rich Low_complexity Low_complexity 1 21 0 328 308 68 8 chr9 8697180 8697297 -109165330 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 8697376 8697411 -109165216 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 8697914 8697947 -109164680 + AT_rich Low_complexity Low_complexity 1 33 0 17257 68 1 5 chr9 8698232 8700470 -109162157 + L1P LINE L1 2780 5009 -1137 261 98 0 0 chr9 8700591 8700632 -109161995 + (C)n Simple_repeat Simple_repeat 1 41 0 474 273 58 0 chr9 8700669 8700808 -109161819 + MIR SINE MIR 111 257 -5 1873 107 4 0 chr9 8702072 8702325 -109160302 + AluSx SINE Alu 1 254 -58 981 310 90 35 chr9 8702361 8702906 -109159721 + L1M4 LINE L1 192 766 -5776 7057 118 8 98 chr9 8703007 8704341 -109158286 + Tigger1 DNA MER2_type 995 2208 -210 4774 84 0 0 chr9 8704341 8704933 -109157694 - L1PA7 LINE L1 -1 6153 5562 2817 50 0 0 chr9 8704933 8705256 -109157371 + L1PA5 LINE L1 5830 6152 -2 484 255 213 0 chr9 8706085 8706226 -109156401 - MER5A DNA MER1_type -2 187 17 214 333 11 21 chr9 8706514 8706607 -109156020 + L2 LINE L2 2604 2695 -619 262 261 108 64 chr9 8706780 8706937 -109155690 + L2 LINE L2 2896 3059 -213 208 348 87 26 chr9 8707050 8707165 -109155462 + L2 LINE L2 3134 3255 -17 413 210 15 29 chr9 8707477 8707682 -109154945 + GA-rich Low_complexity Low_complexity 1 202 0 320 202 8 42 chr9 8707690 8707809 -109154818 + A-rich Low_complexity Low_complexity 2 116 0 342 269 134 29 chr9 8707915 8708086 -109154541 + L1ME LINE L1 5607 5795 -326 501 208 88 31 chr9 8708586 8708611 -109154016 - LTR23-int LTR ERV1 -3789 4331 4309 1707 183 10 0 chr9 8708611 8708912 -109153715 - AluJo SINE Alu -8 304 1 501 208 88 31 chr9 8708912 8709045 -109153582 - LTR23-int LTR ERV1 -3811 4309 4164 488 247 58 42 chr9 8709069 8709415 -109153212 - LTR23-int LTR ERV1 -1923 2957 1952 3846 79 8 2 chr9 8709415 8709923 -109152704 - LTR6B LTR ERV1 0 558 48 6653 138 1 1 chr9 8709923 8710860 -109151767 - HERVS71 LTR ERV1 -48 8930 7994 8809 68 78 1 chr9 8710965 8712148 -109150479 - L1P LINE L1 -4015 2131 858 5845 37 17 0 chr9 8712141 8713082 -109149545 + L1PA4 LINE L1 5012 5968 -187 * 1853 148 0 24 chr9 8714694 8714991 -109147636 + AluJb SINE Alu 3 292 -20 696 172 0 67 chr9 8715100 8715234 -109147393 + FLAM_A SINE Alu 1 125 -8 316 295 18 27 chr9 8715364 8715476 -109147151 - L1MEd LINE L1 -5310 809 699 911 193 0 0 chr9 8715478 8715623 -109147004 - AluJb SINE Alu -28 284 140 1998 119 7 23 chr9 8716118 8716420 -109146207 - AluSx SINE Alu -15 297 1 2458 93 0 3 chr9 8717371 8717684 -109144943 - AluSx SINE Alu 0 312 1 799 163 124 28 chr9 8718009 8718187 -109144440 - MER31B LTR ERV1 0 466 272 255 277 50 40 chr9 8718297 8718398 -109144229 + MER5B DNA MER1_type 19 120 -58 1521 178 90 59 chr9 8718509 8718925 -109143702 - MER21B LTR ERV1 -186 745 317 1745 201 134 87 chr9 8718931 8719443 -109143184 + MER50 LTR ERV1 10 565 -169 2283 110 0 0 chr9 8719443 8719742 -109142885 - AluSg SINE Alu -11 299 1 1745 201 134 87 chr9 8719742 8719921 -109142706 + MER50 LTR ERV1 565 734 0 1215 151 45 113 chr9 8719922 8720268 -109142359 - MER39 LTR ERV1 -237 470 62 306 171 0 122 chr9 8720380 8720462 -109142165 - MER21A LTR ERV1 -859 72 1 628 270 66 5 chr9 8720470 8720709 -109141918 - L1 LINE L1 -1857 4289 4046 342 203 14 0 chr9 8720815 8720889 -109141738 - LTR54B LTR ERV1 -419 79 5 7295 168 32 15 chr9 8720890 8722190 -109140437 - MER57-int LTR ERV1 -390 7147 5825 6389 151 58 30 chr9 8722515 8723152 -109139475 - MER57-int LTR ERV1 -1717 5820 5202 1434 182 87 0 chr9 8723152 8723270 -109139357 + AluSx SINE Alu 1 107 -205 419 0 20 0 chr9 8723270 8723321 -109139306 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1434 182 87 0 chr9 8723321 8723477 -109139150 + AluSx SINE Alu 107 299 -13 6389 151 58 30 chr9 8723477 8724083 -109138544 - MER57-int LTR ERV1 -2335 5202 4543 2250 94 0 20 chr9 8725567 8725865 -109136762 + AluSg SINE Alu 1 292 -18 1755 175 24 7 chr9 8726760 8727052 -109135575 - AluSx SINE Alu -15 297 1 249 238 149 36 chr9 8727099 8727435 -109135192 - L1ME4a LINE L1 -24 6097 5724 1175 177 12 49 chr9 8727444 8727533 -109135094 + MLT2B2 LTR ERVL 1 92 -423 4836 87 51 6 chr9 8727533 8728165 -109134462 - PABL_A LTR ERV1 0 660 1 1175 177 12 49 chr9 8728165 8728318 -109134309 + MLT2B2 LTR ERVL 92 234 -281 23 78 0 0 chr9 8728955 8729006 -109133621 + AT_rich Low_complexity Low_complexity 1 51 0 261 0 0 0 chr9 8729006 8729035 -109133592 + (TA)n Simple_repeat Simple_repeat 1 29 0 2165 120 0 3 chr9 8729035 8729334 -109133293 - AluSx SINE Alu -13 299 2 808 61 0 0 chr9 8729605 8729703 -109132924 + L1P LINE L1 1 98 -6048 * 5709 119 0 2 chr9 8729701 8730535 -109132092 + L1P LINE L1 623 1454 -4692 13695 51 5 0 chr9 8730648 8732936 -109129691 - L1PA5 LINE L1 -140 6014 3716 8061 28 16 0 chr9 8734857 8735864 -109126763 - L1PA3 LINE L1 0 6155 5144 4205 209 125 64 chr9 8735974 8736783 -109125844 - L1MC4 LINE L1 -144 7898 6971 2066 241 124 8 chr9 8736783 8737313 -109125314 - MLT1G1 LTR MaLR 0 595 4 4205 209 125 64 chr9 8737313 8737869 -109124758 - L1MC4 LINE L1 -1071 6971 6450 315 315 35 35 chr9 8738105 8738248 -109124379 + MIR3 SINE MIR 41 183 -25 378 0 0 0 chr9 8738923 8738965 -109123662 + (CA)n Simple_repeat Simple_repeat 2 43 0 229 203 31 31 chr9 8739061 8739125 -109123502 + G-rich Low_complexity Low_complexity 1 64 0 787 305 4 21 chr9 8739652 8739891 -109122736 - MIR SINE MIR -25 237 3 267 314 50 6 chr9 8740120 8740136 -109122491 - L1MA10 LINE L1 0 6334 6319 1347 231 34 0 chr9 8740136 8740430 -109122197 - L1ME1 LINE L1 -6 6160 5857 812 146 22 14 chr9 8740435 8740774 -109121853 + CT-rich Low_complexity Low_complexity 1 341 0 1523 163 22 22 chr9 8740800 8741077 -109121550 - AluJo SINE Alu -3 309 33 1500 185 48 0 chr9 8741077 8741347 -109121280 - L1ME1 LINE L1 -307 5859 5577 252 204 250 65 chr9 8741348 8741456 -109121171 + MER34 LTR ERV1 5 132 -410 1409 198 39 61 chr9 8741530 8741940 -109120687 + MER39 LTR ERV1 307 707 0 802 195 12 12 chr9 8741940 8742109 -109120518 - L1ME1 LINE L1 -583 5583 5415 660 298 5 6 chr9 8743222 8743415 -109119212 - MIR SINE MIR -34 228 38 810 210 23 109 chr9 8743798 8744033 -109118594 - MIR SINE MIR -10 252 39 1204 153 9 37 chr9 8744033 8744248 -109118379 - MER3 DNA MER1_type 0 209 1 810 210 23 109 chr9 8744248 8744269 -109118358 - MIR SINE MIR -223 39 18 1067 135 6 0 chr9 8744520 8744683 -109117944 - L1MA4 LINE L1 -362 5938 5775 257 214 60 0 chr9 8744684 8744768 -109117859 + (TA)n Simple_repeat Simple_repeat 1 89 0 496 289 121 0 chr9 8744768 8744958 -109117669 + LTR33 LTR ERVL 309 521 0 326 384 23 6 chr9 8745206 8745378 -109117249 + MIR3 SINE MIR 19 193 -15 23 0 0 0 chr9 8745843 8745866 -109116761 + AT_rich Low_complexity Low_complexity 1 23 0 2846 86 6 0 chr9 8746169 8746520 -109116107 + THE1A LTR MaLR 3 355 0 2857 96 7 0 chr9 8746521 8746938 -109115689 + THE1A-int LTR MaLR 2 421 -1159 2326 116 30 58 chr9 8747042 8747259 -109115368 - L1MA5A LINE L1 -175 6122 5900 1749 132 90 39 chr9 8747259 8747614 -109115013 - THE1C LTR MaLR -2 373 1 2326 116 30 58 chr9 8747614 8747701 -109114926 - L1MA5A LINE L1 -397 5900 5812 2038 158 0 0 chr9 8747701 8748004 -109114623 - AluJb SINE Alu -9 303 1 2326 116 30 58 chr9 8748004 8748162 -109114465 - L1MA5A LINE L1 -485 5812 5672 1260 220 86 40 chr9 8748169 8748574 -109114053 - L1ME2 LINE L1 -9 6155 5732 713 199 0 14 chr9 8749233 8749374 -109113253 + FLAM_C SINE Alu 3 141 -2 198 167 0 0 chr9 8749485 8749521 -109113106 + (TA)n Simple_repeat Simple_repeat 2 37 0 707 257 45 4 chr9 8749555 8749800 -109112827 - L1ME3A LINE L1 -220 5950 5696 23 33 0 0 chr9 8750312 8750342 -109112285 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr9 8750379 8750403 -109112224 + (TA)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr9 8750471 8750506 -109112121 + AT_rich Low_complexity Low_complexity 1 35 0 1630 202 40 3 chr9 8750923 8751275 -109111352 - MLT1A1 LTR MaLR 0 365 1 306 208 0 14 chr9 8751483 8751555 -109111072 + HAL1b LINE L1 1197 1267 -81 469 33 0 0 chr9 8752098 8752159 -109110468 + L1PA4 LINE L1 6092 6152 -3 1756 170 3 50 chr9 8752159 8752541 -109110086 - MSTA LTR MaLR -64 364 1 8260 195 29 5 chr9 8752541 8754153 -109108474 - MSTA-int LTR MaLR 0 1651 2 702 151 122 14 chr9 8754154 8754293 -109108334 - MSTA LTR MaLR 0 428 275 315 93 0 0 chr9 8754293 8754336 -109108291 - THE1A LTR MaLR 0 355 313 644 179 0 0 chr9 8754336 8754459 -109108168 - THE1B LTR MaLR 0 364 242 24 0 0 0 chr9 8754750 8754774 -109107853 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr9 8754907 8754944 -109107683 + AT_rich Low_complexity Low_complexity 1 37 0 206 146 24 24 chr9 8756352 8756393 -109106234 + CT-rich Low_complexity Low_complexity 2 42 0 588 98 12 0 chr9 8756521 8756603 -109106024 + AluY SINE Alu 1 83 -227 224 307 40 0 chr9 8757192 8757267 -109105360 + MIR SINE MIR 171 248 -14 291 28 0 0 chr9 8757459 8757495 -109105132 + (TG)n Simple_repeat Simple_repeat 2 37 0 2393 93 0 3 chr9 8757882 8758193 -109104434 - AluSg SINE Alu 0 310 1 1813 144 0 0 chr9 8758210 8758460 -109104167 - AluSq SINE Alu -63 250 1 308 270 87 0 chr9 8758461 8758576 -109104051 + L1ME2 LINE L1 6040 6164 0 332 174 122 26 chr9 8758596 8758711 -109103916 + L1MC5 LINE L1 7786 7911 -50 287 278 69 14 chr9 8759646 8759790 -109102837 + BaEV-int LTR ERV1 216 367 -6282 499 325 5 10 chr9 8760135 8760338 -109102289 + BaEV-int LTR ERV1 802 1003 -6782 732 320 39 34 chr9 8760505 8761192 -109101435 + BaEV-int LTR ERV1 1048 1738 -4911 1836 118 16 6 chr9 8761379 8761701 -109100926 - L1M3f LINE L1 -4221 1107 783 4941 120 5 0 chr9 8761701 8762451 -109100176 - THE1A-int LTR MaLR -826 754 1 2288 132 0 6 chr9 8762451 8762806 -109099821 - THE1A LTR MaLR 0 355 3 3660 115 48 0 chr9 8762810 8763368 -109099259 + BaEV-int LTR ERV1 4152 4736 -2355 577 103 0 0 chr9 8763368 8763446 -109099181 + Alu SINE Alu 1 78 -233 30 111 0 0 chr9 8763947 8764082 -109098545 + AT_rich Low_complexity Low_complexity 1 135 0 203 0 37 0 chr9 8764310 8764337 -109098290 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 1400 248 48 3 chr9 8764579 8764910 -109097717 - MLT1A1 LTR MaLR -6 359 14 180 0 0 0 chr9 8764965 8764985 -109097642 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2299 173 16 43 chr9 8766065 8766800 -109095827 - MER52A-int LTR ERV1 -1331 1966 953 * 5820 179 35 41 chr9 8766794 8767007 -109095620 - MER52A-int LTR ERV1 -1882 1261 1048 2275 159 3 0 chr9 8767007 8767379 -109095248 - THE1C LTR MaLR -2 373 1 5820 179 35 41 chr9 8767379 8768472 -109094155 - MER52A-int LTR ERV1 -2095 1048 30 437 271 6 54 chr9 8768477 8768643 -109093984 - MER52A LTR ERV1 0 1755 1598 489 306 22 71 chr9 8768648 8768916 -109093711 - MER52A LTR ERV1 -285 1470 1216 1756 170 69 20 chr9 8769152 8769499 -109093128 + THE1B LTR MaLR 1 364 0 11009 115 10 2 chr9 8769500 8771066 -109091561 + THE1B-int LTR MaLR 2 1579 -1 976 173 20 25 chr9 8771074 8771271 -109091356 + THE1B LTR MaLR 16 211 -153 1015 105 6 19 chr9 8771371 8771533 -109091094 - LTR14B LTR ERVK -432 176 17 570 336 8 4 chr9 8771533 8771795 -109090832 + Harlequin LTR ERV1 5494 5756 -2029 288 269 25 25 chr9 8772026 8772145 -109090482 + Harlequin LTR ERV1 4735 4853 -1796 386 298 28 37 chr9 8772561 8772776 -109089851 + Harlequin LTR ERV1 5326 5538 -1111 287 193 50 67 chr9 8773003 8773122 -109089505 + Harlequin LTR ERV1 3819 3935 -2961 1990 78 11 14 chr9 8773173 8773456 -109089171 - AluY SINE Alu -1 310 29 19477 33 7 0 chr9 8773762 8776263 -109086364 + L1P LINE L1 2545 5062 -1084 13802 89 6 5 chr9 8776363 8778427 -109084200 + L1P LINE L1 3038 5104 -1042 730 325 49 0 chr9 8828942 8829185 -109033442 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 8831087 8831125 -109031502 + AT_rich Low_complexity Low_complexity 1 38 0 2023 137 13 0 chr9 8831126 8831425 -109031202 - AluSx SINE Alu -5 307 5 608 177 0 54 chr9 8831947 8832077 -109030550 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 8834018 8834043 -109028584 + AT_rich Low_complexity Low_complexity 1 25 0 292 291 34 34 chr9 8834184 8834301 -109028326 + Tigger8 DNA MER2_type 127 243 -423 489 224 10 0 chr9 8834473 8834571 -109028056 - MER94 DNA DNA -35 99 1 636 143 0 0 chr9 8834696 8834808 -109027819 + (GA)n Simple_repeat Simple_repeat 1 112 0 22 0 0 0 chr9 8835294 8835316 -109027311 + AT_rich Low_complexity Low_complexity 1 22 0 277 262 85 37 chr9 8836115 8836279 -109026348 + L1ME4a LINE L1 5933 6104 -17 565 286 5 46 chr9 8836621 8836817 -109025810 - MIR SINE MIR -70 192 5 1133 189 8 39 chr9 8838822 8839081 -109023546 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 8839376 8839397 -109023230 + AT_rich Low_complexity Low_complexity 1 21 0 343 308 68 8 chr9 8840004 8840121 -109022506 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 8840200 8840235 -109022392 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 8840629 8840662 -109021965 + AT_rich Low_complexity Low_complexity 1 33 0 409 199 7 28 chr9 8841087 8841228 -109021399 + CT-rich Low_complexity Low_complexity 1 138 0 1873 159 7 3 chr9 8841693 8842001 -109020626 + AluJb SINE Alu 3 311 -1 21 0 0 0 chr9 8843847 8843868 -109018759 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 8843971 8843992 -109018635 + AT_rich Low_complexity Low_complexity 1 21 0 907 227 71 21 chr9 8844133 8844371 -109018256 + MIR SINE MIR 11 260 -2 245 256 24 39 chr9 8844485 8844587 -109018040 + GA-rich Low_complexity Low_complexity 3 170 0 207 357 14 13 chr9 8845594 8845673 -109016954 - MIR3 SINE MIR -54 154 75 406 327 73 29 chr9 8845991 8846196 -109016431 - MIR SINE MIR -39 223 10 183 146 0 0 chr9 8847480 8847521 -109015106 + (TTA)n Simple_repeat Simple_repeat 2 42 0 746 224 6 17 chr9 8847580 8847754 -109014873 + MER104 DNA Tc2 6 177 -3 454 333 138 4 chr9 8847757 8847988 -109014639 - MIR SINE MIR 0 262 1 204 40 0 0 chr9 8848499 8848524 -109014103 + (TG)n Simple_repeat Simple_repeat 2 26 0 360 289 47 31 chr9 8849100 8849236 -109013391 + MIR3 SINE MIR 49 187 -21 1906 148 0 22 chr9 8850085 8850402 -109012225 - AluJb SINE Alu -2 310 1 500 219 0 0 chr9 8850451 8850547 -109012080 - MER5A DNA MER1_type -80 109 14 425 309 8 8 chr9 8851489 8851615 -109011012 + MER5A DNA MER1_type 7 132 -57 1841 92 0 0 chr9 8851618 8851869 -109010758 - L1P LINE L1 -2459 3687 3437 279 286 52 104 chr9 8852070 8852301 -109010326 - L3b LINE CR1 -74 1509 1291 5632 165 87 3 chr9 8852913 8853801 -109008826 + Tigger3b DNA MER2_type 2 813 -2215 294 29 0 0 chr9 8853801 8853836 -109008791 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1968 107 7 4 chr9 8853836 8854106 -109008521 - AluSq SINE Alu -42 271 1 5632 165 87 3 chr9 8854106 8854349 -109008278 + Tigger3b DNA MER2_type 812 1230 -1 333 118 0 0 chr9 8855526 8855577 -109007050 + (CA)n Simple_repeat Simple_repeat 2 52 0 1085 159 85 0 chr9 8855926 8856127 -109006500 + L1MA7 LINE L1 5893 6110 -181 27 0 0 0 chr9 8856149 8856176 -109006451 + AT_rich Low_complexity Low_complexity 1 27 0 316 344 94 25 chr9 8859001 8859161 -109003466 + MIR3 SINE MIR 8 178 -30 279 0 0 0 chr9 8859761 8859792 -109002835 + (T)n Simple_repeat Simple_repeat 1 31 0 340 250 26 0 chr9 8859793 8859869 -109002758 + MER5B DNA MER1_type 65 142 -36 2239 99 3 0 chr9 8860145 8860438 -109002189 - AluSg SINE Alu -16 294 1 380 299 24 31 chr9 8860648 8860775 -109001852 - MIR3 SINE MIR -6 202 77 225 191 0 0 chr9 8860882 8860924 -109001703 - Charlie8 DNA MER1_type -28 2389 2348 377 301 78 44 chr9 8860935 8861375 -109001252 - Charlie8 DNA MER1_type -2196 221 1 272 324 70 28 chr9 8861561 8861703 -109000924 - MIR3 SINE MIR -49 159 12 1094 213 13 30 chr9 8862744 8862974 -108999653 + AluJb SINE Alu 61 286 -26 392 324 42 19 chr9 8863875 8864088 -108998539 + L1MC/D LINE L1 5586 5803 -2005 29 60 0 0 chr9 8864329 8864379 -108998248 + AT_rich Low_complexity Low_complexity 1 50 0 1645 182 0 10 chr9 8867868 8868159 -108994468 + AluJb SINE Alu 1 288 -24 204 125 0 0 chr9 8869071 8869103 -108993524 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 294 252 146 24 chr9 8872833 8872956 -108989671 + MIR3 SINE MIR 57 194 -14 2276 68 0 4 chr9 8873010 8873289 -108989338 - AluY SINE Alu -33 278 1 896 200 5 36 chr9 8873501 8873696 -108988931 - MER5A DNA MER1_type 0 189 1 243 220 17 0 chr9 8873763 8873822 -108988805 + (TA)n Simple_repeat Simple_repeat 2 61 0 185 0 40 0 chr9 8874045 8874070 -108988557 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 333 0 0 0 chr9 8874637 8874674 -108987953 + (TG)n Simple_repeat Simple_repeat 1 37 0 315 281 156 0 chr9 8875944 8876040 -108986587 - L2 LINE L2 -18 3295 3185 29 28 0 0 chr9 8876755 8876791 -108985836 + AT_rich Low_complexity Low_complexity 1 36 0 426 263 51 36 chr9 8876967 8877104 -108985523 - MIR3 SINE MIR -45 163 25 22 0 0 0 chr9 8879343 8879365 -108983262 + AT_rich Low_complexity Low_complexity 1 22 0 219 275 110 28 chr9 8880730 8880839 -108981788 - L2 LINE L2 -15 3298 3181 854 150 0 0 chr9 8881648 8881775 -108980852 - FLAM_C SINE Alu -16 127 1 247 375 27 18 chr9 8882697 8882809 -108979818 + L2 LINE L2 3154 3266 -6 234 0 0 0 chr9 8883134 8883160 -108979467 + (A)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr9 8886503 8886529 -108976098 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr9 8886924 8886953 -108975674 + AT_rich Low_complexity Low_complexity 1 29 0 722 185 15 29 chr9 8887204 8887367 -108975260 - MIR SINE MIR 0 262 103 1311 204 39 0 chr9 8892336 8892644 -108969983 + MER33 DNA MER1_type 5 324 0 565 308 31 62 chr9 8893827 8894275 -108968352 + L2 LINE L2 340 773 -2541 1290 346 103 36 chr9 8894275 8895873 -108966754 + L2 LINE L2 1118 2823 -491 1997 158 3 32 chr9 8895933 8896280 -108966347 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr9 8896490 8896511 -108966116 + AT_rich Low_complexity Low_complexity 1 21 0 462 257 182 30 chr9 8897671 8897873 -108964754 + MIR SINE MIR 3 228 -34 479 248 35 0 chr9 8897902 8898015 -108964612 + MIR SINE MIR 75 191 -71 275 319 21 11 chr9 8900417 8900511 -108962116 + L2 LINE L2 2976 3070 -202 265 302 35 99 chr9 8900739 8900941 -108961686 + L2 LINE L2 2909 3097 -175 582 226 68 0 chr9 8901097 8901230 -108961397 + L1MA10 LINE L1 6192 6333 -1 2265 91 3 3 chr9 8901388 8901696 -108960931 + AluY SINE Alu 1 308 -3 2122 117 0 0 chr9 8902307 8902610 -108960017 - AluSg SINE Alu 0 303 1 2100 98 0 80 chr9 8904000 8904360 -108958267 + AluY SINE Alu 1 333 0 353 286 56 89 chr9 8907244 8907513 -108955114 - MIR SINE MIR -1 261 2 338 263 0 0 chr9 8907611 8907706 -108954921 + MIR SINE MIR 120 214 -48 1326 207 46 25 chr9 8907977 8908065 -108954562 + AluJo SINE Alu 1 86 -226 2064 94 33 0 chr9 8908065 8908370 -108954257 + AluSp SINE Alu 1 314 0 1326 207 46 25 chr9 8908370 8908560 -108954067 + AluJo SINE Alu 86 286 -26 22 56 0 0 chr9 8909172 8909208 -108953419 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr9 8912188 8912208 -108950419 + (A)n Simple_repeat Simple_repeat 1 20 0 705 288 95 21 chr9 8912823 8913150 -108949477 + L2 LINE L2 2943 3293 -20 594 226 119 43 chr9 8913721 8913956 -108948671 + MIR SINE MIR 7 259 -3 498 91 0 0 chr9 8914493 8914570 -108948057 + (CA)n Simple_repeat Simple_repeat 2 78 0 276 344 139 35 chr9 8915448 8916018 -108946609 + L2 LINE L2 2045 2673 -641 624 233 38 88 chr9 8916019 8916281 -108946346 - MER112 DNA MER1_type 0 260 12 507 17 0 0 chr9 8916701 8916761 -108945866 + (CA)n Simple_repeat Simple_repeat 2 61 0 1077 80 98 18 chr9 8917319 8917482 -108945145 - MER30 DNA MER1_type -54 176 1 230 245 0 53 chr9 8918228 8918322 -108944305 + GA-rich Low_complexity Low_complexity 2 90 0 1778 108 0 15 chr9 8918796 8919056 -108943571 - AluSc SINE Alu -4 305 50 183 129 0 0 chr9 8920580 8920611 -108942016 + (A)n Simple_repeat Simple_repeat 1 31 0 306 50 0 0 chr9 8921079 8921119 -108941508 + (A)n Simple_repeat Simple_repeat 1 40 0 211 282 0 0 chr9 8921643 8921714 -108940913 + A-rich Low_complexity Low_complexity 1 71 0 230 217 0 0 chr9 8923361 8923407 -108939220 + L1MC4 LINE L1 6658 6703 -1339 2448 76 0 10 chr9 8925870 8926184 -108936443 + AluY SINE Alu 1 311 0 212 162 0 0 chr9 8926367 8926404 -108936223 + (TATG)n Simple_repeat Simple_repeat 2 38 0 749 289 47 16 chr9 8926997 8927250 -108935377 + MIR SINE MIR 2 262 0 205 356 0 0 chr9 8928247 8928334 -108934293 + MIR SINE MIR 160 246 -16 180 0 0 0 chr9 8928524 8928544 -108934083 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 450 79 0 0 chr9 8929393 8929456 -108933171 + (TG)n Simple_repeat Simple_repeat 2 64 0 1712 172 0 26 chr9 8930536 8930839 -108931788 + AluJo SINE Alu 6 300 -12 565 284 86 46 chr9 8930866 8931169 -108931458 - MER102b DNA MER1_type -8 333 19 242 239 14 0 chr9 8931540 8931611 -108931016 + (TA)n Simple_repeat Simple_repeat 1 72 0 1543 194 7 14 chr9 8931612 8931900 -108930727 - AluJb SINE Alu -26 286 1 21 0 0 0 chr9 8932007 8932028 -108930599 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 8932235 8932263 -108930364 + AT_rich Low_complexity Low_complexity 1 28 0 2027 145 49 25 chr9 8935291 8935657 -108926970 + THE1C LTR MaLR 1 375 0 393 258 88 57 chr9 8935671 8935865 -108926762 + MIR SINE MIR 39 238 -24 2147 195 28 11 chr9 8935951 8936408 -108926219 + MLT1C LTR MaLR 1 465 -2 341 239 146 23 chr9 8936412 8936542 -108926085 - MIR SINE MIR -83 179 34 1920 130 29 29 chr9 8937328 8937635 -108924992 - AluSx SINE Alu -5 307 1 430 286 29 0 chr9 8939181 8939387 -108923240 + MIR SINE MIR 49 229 -33 262 361 0 53 chr9 8940082 8940215 -108922412 + L2 LINE L2 3188 3313 0 247 369 0 0 chr9 8940936 8941020 -108921607 + L2 LINE L2 3188 3271 -42 28 48 0 0 chr9 8943351 8943393 -108919234 + AT_rich Low_complexity Low_complexity 1 42 0 219 235 20 0 chr9 8945105 8945156 -108917471 + GA-rich Low_complexity Low_complexity 4 55 0 336 200 0 0 chr9 8946780 8946850 -108915777 + A-rich Low_complexity Low_complexity 1 70 0 184 128 21 21 chr9 8946943 8946990 -108915637 + GA-rich Low_complexity Low_complexity 2 48 0 195 100 0 0 chr9 8947553 8947583 -108915044 + (TA)n Simple_repeat Simple_repeat 1 30 0 26 0 0 0 chr9 8947796 8947822 -108914805 + AT_rich Low_complexity Low_complexity 1 26 0 250 200 17 0 chr9 8949023 8949083 -108913544 + A-rich Low_complexity Low_complexity 1 61 0 824 65 0 0 chr9 8950325 8950432 -108912195 - L1PA5 LINE L1 -5 6149 6043 343 219 27 0 chr9 8955469 8955542 -108907085 - L2 LINE L2 -2 3311 3237 214 256 105 12 chr9 8955599 8955685 -108906942 + MIR SINE MIR 141 234 -28 349 198 23 0 chr9 8956922 8957008 -108905619 - L1MC4 LINE L1 -1339 6703 6616 32 57 0 0 chr9 8958791 8958844 -108903783 + AT_rich Low_complexity Low_complexity 1 53 0 1293 221 66 138 chr9 8959063 8960622 -108902005 + L1MC4 LINE L1 6539 7896 -146 1390 228 7 7 chr9 8961758 8962056 -108900571 - AluJb SINE Alu -11 301 4 605 210 14 22 chr9 8962058 8962196 -108900431 - FLAM_C SINE Alu -6 137 1 202 195 0 0 chr9 8962198 8962239 -108900388 + (TG)n Simple_repeat Simple_repeat 2 42 0 2133 135 3 0 chr9 8964236 8964539 -108898088 - AluSg SINE Alu -6 304 1 881 122 8 0 chr9 8964694 8964825 -108897802 - AluSx SINE Alu -9 303 172 543 107 12 12 chr9 8964825 8964909 -108897718 - AluSx SINE Alu -227 86 3 2042 136 3 3 chr9 8964997 8965298 -108897329 - AluSx SINE Alu -9 303 3 272 163 20 0 chr9 8965298 8965347 -108897280 + MADE1 DNA Mariner 30 79 -1 198 0 0 0 chr9 8965419 8965441 -108897186 + (T)n Simple_repeat Simple_repeat 1 22 0 2115 125 0 6 chr9 8967017 8967330 -108895297 - AluSx SINE Alu -1 311 1 203 167 0 0 chr9 8967852 8967888 -108894739 + GA-rich Low_complexity Low_complexity 2 37 0 1677 194 7 0 chr9 8967897 8968191 -108894436 + AluJb SINE Alu 6 301 -11 1902 152 3 3 chr9 8968900 8969197 -108893430 - AluSx SINE Alu -15 297 1 2483 68 13 0 chr9 8969211 8969518 -108893109 - AluSp SINE Alu 0 313 3 227 304 138 29 chr9 8969525 8969663 -108892964 - L2 LINE L2 -567 2747 2595 275 306 28 19 chr9 8970803 8970911 -108891716 + MIR SINE MIR 152 260 -2 242 231 19 0 chr9 8971982 8972034 -108890593 + CT-rich Low_complexity Low_complexity 3 55 0 286 100 0 80 chr9 8974187 8974237 -108888390 + U2 snRNA snRNA 1 46 -142 2183 103 0 4 chr9 8974436 8974741 -108887886 + AluSg SINE Alu 1 304 0 1427 182 50 12 chr9 8975664 8975922 -108886705 + AluJb SINE Alu 1 268 -44 213 268 0 0 chr9 8977824 8977865 -108884762 + L2 LINE L2 3215 3255 -17 213 39 0 0 chr9 8977961 8977987 -108884640 + (TA)n Simple_repeat Simple_repeat 2 27 0 2326 106 0 0 chr9 8977990 8978302 -108884325 + AluSx SINE Alu 1 312 0 342 67 0 0 chr9 8978309 8978354 -108884273 + (CA)n Simple_repeat Simple_repeat 2 46 0 222 235 0 0 chr9 8978354 8978405 -108884222 + (TA)n Simple_repeat Simple_repeat 2 52 0 984 203 83 0 chr9 8979681 8979922 -108882705 + L1MA4 LINE L1 6036 6296 -4 330 87 0 0 chr9 8980966 8981012 -108881615 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr9 8981053 8981075 -108881552 + AT_rich Low_complexity Low_complexity 1 22 0 2337 206 28 29 chr9 8981473 8982134 -108880493 + LTR27 LTR ERV1 1 498 -138 22 35 0 0 chr9 8982353 8982382 -108880245 + AT_rich Low_complexity Low_complexity 1 29 0 1922 158 0 0 chr9 8982958 8983266 -108879361 - AluJb SINE Alu 0 308 1 714 219 63 15 chr9 8983322 8983527 -108879100 - L1M4 LINE L1 -1034 5112 4898 644 256 48 6 chr9 8983526 8983751 -108878876 + L1ME2 LINE L1 5756 5993 -177 * 465 186 21 0 chr9 8983800 8983897 -108878730 + L1MA10 LINE L1 6221 6319 -15 209 152 22 0 chr9 8983902 8983930 -108878697 + (CATATA)n Simple_repeat Simple_repeat 3 29 -20 1978 202 14 31 chr9 8983930 8983966 -108878661 + MER47B DNA MER2_type 1 36 -2287 1888 116 4 0 chr9 8983966 8984224 -108878403 - AluSg SINE Alu -11 299 41 1714 155 0 15 chr9 8984224 8984495 -108878132 - AluSx SINE Alu -45 267 1 1978 202 14 31 chr9 8984495 8984882 -108877745 + MER47B DNA MER2_type 34 418 0 209 152 22 0 chr9 8984882 8984899 -108877728 + (CATATA)n Simple_repeat Simple_repeat 29 49 0 1944 117 14 21 chr9 8984946 8985237 -108877390 + AluSx SINE Alu 1 289 -23 369 0 0 0 chr9 8986630 8986671 -108875956 + (TG)n Simple_repeat Simple_repeat 2 42 0 282 319 92 17 chr9 8987128 8987247 -108875380 + L2 LINE L2 3144 3271 -1 250 282 103 136 chr9 8987815 8988145 -108874482 + L2 LINE L2 2954 3272 0 22 35 0 0 chr9 8988641 8988670 -108873957 + AT_rich Low_complexity Low_complexity 1 29 0 212 345 84 21 chr9 8992504 8992646 -108869981 + MIR3 SINE MIR 33 183 -25 23 0 0 0 chr9 8994653 8994676 -108867951 + AT_rich Low_complexity Low_complexity 1 23 0 180 306 69 69 chr9 8996162 8996234 -108866393 - L2 LINE L2 0 3313 3242 241 272 7 110 chr9 8997543 8997582 -108865045 + L2 LINE L2 2938 2979 -293 2170 95 3 3 chr9 8997582 8997912 -108864715 - AluSp SINE Alu 0 330 1 241 272 7 110 chr9 8997912 8998007 -108864620 + L2 LINE L2 2979 3059 -213 933 197 16 16 chr9 8998084 8998272 -108864355 + MER5A DNA MER1_type 1 188 -1 343 346 58 6 chr9 8999829 8999985 -108862642 - L2 LINE L2 -1 3271 3108 463 322 64 35 chr9 9001502 9001816 -108860811 + L1ME LINE L1 2979 3301 -2845 2346 90 3 0 chr9 9001824 9002125 -108860502 + AluY SINE Alu 1 302 -9 270 116 0 0 chr9 9002125 9002168 -108860459 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 462 188 111 8 chr9 9002170 9002287 -108860340 + FLAM_C SINE Alu 5 133 0 438 273 108 45 chr9 9002550 9002884 -108859743 + L1ME LINE L1 4905 5259 -887 444 285 57 44 chr9 9002910 9003398 -108859229 + L1ME LINE L1 5312 5803 -367 1739 141 4 15 chr9 9003418 9003680 -108858947 - MER1B DNA MER1_type -80 259 1 627 197 0 53 chr9 9003709 9003841 -108858786 - FLAM_A SINE Alu -8 125 1 1851 174 0 7 chr9 9004227 9004515 -108858112 + AluJb SINE Alu 1 286 -26 32 26 0 0 chr9 9004515 9004554 -108858073 + AT_rich Low_complexity Low_complexity 1 39 0 2572 121 3 5 chr9 9005078 9005449 -108857178 - THE1C LTR MaLR 0 375 6 23 33 0 0 chr9 9005640 9005670 -108856957 + AT_rich Low_complexity Low_complexity 1 30 0 257 313 80 0 chr9 9006115 9006227 -108856400 - MIR SINE MIR -21 241 121 28 0 0 26 chr9 9006358 9006377 -108856250 + AT_rich Low_complexity Low_complexity 1 19 -19 1997 133 3 0 chr9 9006377 9006662 -108855965 + AluSg SINE Alu 1 286 -24 28 0 0 26 chr9 9006662 9006681 -108855946 + AT_rich Low_complexity Low_complexity 19 38 0 25 51 0 0 chr9 9007117 9007156 -108855471 + AT_rich Low_complexity Low_complexity 1 39 0 2234 102 0 10 chr9 9007223 9007536 -108855091 + AluY SINE Alu 1 310 -1 24 32 0 0 chr9 9007672 9007703 -108854924 + AT_rich Low_complexity Low_complexity 1 31 0 298 324 29 0 chr9 9009215 9009317 -108853310 + MER5A DNA MER1_type 40 144 -45 1739 194 35 78 chr9 9011160 9011682 -108850945 - MLT1D LTR MaLR -3 502 4 219 375 94 31 chr9 9013178 9013434 -108849193 - L2 LINE L2 -184 3088 2817 206 247 143 137 chr9 9014367 9014549 -108848078 - L3 LINE CR1 -130 1447 1265 1921 127 69 30 chr9 9014846 9015207 -108847420 + THE1C LTR MaLR 1 375 0 2314 96 0 3 chr9 9015218 9015520 -108847107 - AluY SINE Alu -10 301 1 218 289 0 21 chr9 9017840 9017937 -108844690 + A-rich Low_complexity Low_complexity 2 96 0 22 0 0 0 chr9 9018220 9018242 -108844385 + AT_rich Low_complexity Low_complexity 1 22 0 1816 110 8 34 chr9 9018560 9018856 -108843771 + AluSx SINE Alu 34 322 0 2452 137 0 0 chr9 9019315 9019679 -108842948 + THE1B LTR MaLR 1 364 0 2241 82 26 7 chr9 9019971 9020275 -108842352 - AluSp SINE Alu -3 310 1 9674 193 25 6 chr9 9020285 9022051 -108840576 + L1M1 LINE L1 111 1911 -5654 21 0 0 0 chr9 9022885 9022906 -108839721 + AT_rich Low_complexity Low_complexity 1 21 0 259 254 132 35 chr9 9024436 9024550 -108838077 - L2 LINE L2 -6 3307 3183 339 355 74 31 chr9 9025027 9025283 -108837344 - L2 LINE L2 -757 2557 2291 382 307 106 5 chr9 9025892 9026081 -108836546 + MIR SINE MIR 49 256 -6 186 43 0 0 chr9 9026295 9026318 -108836309 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1361 166 73 7 chr9 9027365 9027667 -108834960 + L1MA8 LINE L1 5964 6285 -6 2098 126 0 7 chr9 9027720 9028022 -108834605 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr9 9029993 9030017 -108832610 + AT_rich Low_complexity Low_complexity 1 24 0 269 321 18 18 chr9 9030323 9030432 -108832195 + MIR SINE MIR 98 206 -56 423 242 87 60 chr9 9030544 9030693 -108831934 + MIR SINE MIR 109 261 -1 264 333 65 24 chr9 9030706 9030829 -108831798 - MIR3 SINE MIR -72 136 9 1825 166 6 13 chr9 9031780 9032094 -108830533 + AluJb SINE Alu 1 312 0 349 221 19 10 chr9 9032094 9032198 -108830429 + GA-rich Low_complexity Low_complexity 5 109 0 260 45 68 0 chr9 9032284 9032328 -108830299 + A-rich Low_complexity Low_complexity 1 47 0 * 270 125 0 0 chr9 9032326 9032374 -108830253 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 285 51 0 0 chr9 9032460 9032499 -108830128 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 429 304 88 21 chr9 9033930 9034124 -108828503 - L3 LINE CR1 -106 1471 1265 640 255 76 0 chr9 9034547 9034692 -108827935 - MER82 DNA MER2_type -25 628 473 1723 163 0 72 chr9 9039058 9039224 -108823403 - AluSx SINE Alu -16 296 162 303 49 0 0 chr9 9039224 9039265 -108823362 + (TG)n Simple_repeat Simple_repeat 2 42 0 1723 163 0 72 chr9 9039265 9039417 -108823210 - AluSx SINE Alu -150 162 1 1795 176 35 23 chr9 9039422 9039853 -108822774 - L1MA8 LINE L1 0 6291 5856 459 289 28 0 chr9 9041372 9041514 -108821113 - MER69 DNA AcHobo -2380 146 1 28 48 0 0 chr9 9041732 9041774 -108820853 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9042320 9042341 -108820286 + AT_rich Low_complexity Low_complexity 1 21 0 231 296 112 40 chr9 9042911 9043036 -108819591 + L2 LINE L2 3139 3272 0 1380 197 10 48 chr9 9043214 9043523 -108819104 + AluJo SINE Alu 1 297 -15 270 274 147 0 chr9 9043524 9043619 -108819008 - L2 LINE L2 -13 3300 3192 220 224 0 0 chr9 9043918 9043967 -108818660 + (TAA)n Simple_repeat Simple_repeat 1 49 0 439 346 87 9 chr9 9043970 9044201 -108818426 - MIR SINE MIR 0 262 14 327 200 50 0 chr9 9044812 9044872 -108817755 - L2 LINE L2 -16 3256 3194 297 328 94 18 chr9 9044930 9045101 -108817526 - MIR SINE MIR -6 256 73 254 244 204 35 chr9 9045367 9045539 -108817088 - L2 LINE L2 -5 3308 3108 249 175 16 32 chr9 9045540 9045603 -108817024 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1203 249 97 45 chr9 9046821 9047315 -108815312 + MLT2B1 LTR ERVL 1 520 0 352 289 33 25 chr9 9047686 9047807 -108814820 + MIR3 SINE MIR 79 200 -8 28 0 0 0 chr9 9047858 9047886 -108814741 + AT_rich Low_complexity Low_complexity 1 28 0 202 340 41 31 chr9 9048984 9049081 -108813546 - MIR SINE MIR -78 130 33 354 23 0 0 chr9 9052479 9052522 -108810105 + (TG)n Simple_repeat Simple_repeat 2 44 0 316 300 0 18 chr9 9055273 9055383 -108807244 - L2 LINE L2 -16 3297 3190 213 66 115 0 chr9 9055389 9055450 -108807177 + (TA)n Simple_repeat Simple_repeat 2 69 0 29 60 0 0 chr9 9055770 9055820 -108806807 + AT_rich Low_complexity Low_complexity 1 50 0 432 359 32 14 chr9 9056499 9056719 -108805908 + MLT1K LTR MaLR 23 246 -342 273 298 72 53 chr9 9058001 9058263 -108804364 + L1ME4a LINE L1 5637 5903 -218 23 0 0 0 chr9 9058461 9058484 -108804143 + AT_rich Low_complexity Low_complexity 1 23 0 2155 104 0 0 chr9 9059183 9059498 -108803129 - AluSc SINE Alu 0 315 1 1571 197 7 0 chr9 9060289 9060579 -108802048 - AluJb SINE Alu -13 299 8 671 115 0 26 chr9 9060627 9060740 -108801887 + AluSp/q SINE Alu 204 313 0 234 81 0 0 chr9 9060904 9060941 -108801686 + (A)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chr9 9061038 9061070 -108801557 + AT_rich Low_complexity Low_complexity 1 32 0 356 86 0 17 chr9 9063700 9063758 -108798869 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 6085 183 38 71 chr9 9063953 9065356 -108797271 + MER52A LTR ERV1 399 1755 0 237 261 0 15 chr9 9065977 9066042 -108796585 + GA-rich Low_complexity Low_complexity 1 64 0 339 268 84 106 chr9 9066366 9066545 -108796082 + MER5B DNA MER1_type 4 178 0 229 351 77 36 chr9 9066851 9067019 -108795608 + L2 LINE L2 2918 3092 -180 373 248 97 31 chr9 9067884 9068110 -108794517 - L1ME LINE L1 -364 5757 5517 1629 180 7 0 chr9 9070273 9070556 -108792071 - AluJo SINE Alu -16 296 12 2259 81 17 10 chr9 9070737 9071035 -108791592 + AluSp SINE Alu 4 303 -10 764 194 90 0 chr9 9074481 9074636 -108787991 - MER20 DNA MER1_type -19 200 32 359 267 87 52 chr9 9076589 9076761 -108785866 + MER5A DNA MER1_type 8 185 -4 844 274 202 13 chr9 9076954 9077330 -108785297 + MER69 DNA AcHobo 1 447 -2079 424 254 42 0 chr9 9077310 9077428 -108785199 + MER69 DNA AcHobo 1917 2039 -487 * 1729 101 26 38 chr9 9077495 9077652 -108784975 - L1P4 LINE L1 -697 5477 5320 2371 95 0 3 chr9 9077652 9077956 -108784671 - AluSq SINE Alu -10 303 1 1729 101 26 38 chr9 9077956 9078218 -108784409 - L1P4 LINE L1 -854 5320 5058 21 36 0 0 chr9 9078416 9078444 -108784183 + AT_rich Low_complexity Low_complexity 1 28 0 193 200 60 0 chr9 9081486 9081536 -108781091 - MIR SINE MIR -93 169 117 258 156 0 0 chr9 9082403 9082448 -108780179 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 516 270 0 0 chr9 9082448 9082559 -108780068 - FLAM_A SINE Alu -22 120 10 279 0 0 0 chr9 9082791 9082822 -108779805 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2100 127 3 3 chr9 9083971 9084278 -108778349 - AluSx SINE Alu -5 307 1 2257 108 0 0 chr9 9087544 9087849 -108774778 + AluSq SINE Alu 1 305 -8 1354 148 44 109 chr9 9087917 9088242 -108774385 + MER46B DNA MER2_type 3 176 -2555 188 0 74 0 chr9 9088242 9088269 -108774358 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1354 148 44 109 chr9 9088269 9088327 -108774300 + MER46B DNA MER2_type 176 236 0 270 154 0 0 chr9 9088391 9088430 -108774197 + MER57A LTR ERV1 295 333 -70 27 0 0 0 chr9 9088432 9088459 -108774168 + AT_rich Low_complexity Low_complexity 1 27 0 503 283 21 26 chr9 9090654 9090845 -108771782 - L1MA9 LINE L1 -173 6139 5950 323 148 0 0 chr9 9090911 9090965 -108771662 - L1MA9 LINE L1 -375 5937 5884 22 0 0 0 chr9 9091719 9091741 -108770886 + AT_rich Low_complexity Low_complexity 1 22 0 921 204 0 52 chr9 9094275 9094505 -108768122 - MER20 DNA MER1_type -1 218 1 2324 85 0 0 chr9 9094677 9094971 -108767656 + AluSc SINE Alu 13 306 -3 396 286 111 20 chr9 9095662 9095861 -108766766 + MIR SINE MIR 44 260 -2 236 98 0 24 chr9 9095983 9096024 -108766603 + (CA)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr9 9096026 9096051 -108766576 + (A)n Simple_repeat Simple_repeat 1 25 0 1147 147 5 0 chr9 9096860 9097044 -108765583 - AluSq SINE Alu -2 311 127 2197 87 13 13 chr9 9097049 9097361 -108765266 - AluSp SINE Alu -1 312 1 2822 139 23 12 chr9 9097686 9098167 -108764460 + L1PA15 LINE L1 5673 6158 -7 25 51 0 0 chr9 9100610 9100649 -108761978 + AT_rich Low_complexity Low_complexity 1 39 0 375 268 12 24 chr9 9101053 9101221 -108761406 + (CATATA)n Simple_repeat Simple_repeat 3 168 0 242 138 447 0 chr9 9102870 9102964 -108759663 + L1MA4 LINE L1 6164 6299 -1 23 33 0 0 chr9 9103023 9103053 -108759574 + AT_rich Low_complexity Low_complexity 1 30 0 711 246 65 98 chr9 9104132 9104702 -108757925 + MLT1G LTR MaLR 40 590 0 415 284 168 10 chr9 9104752 9104949 -108757678 - MIR SINE MIR -27 235 8 26 0 0 0 chr9 9106317 9106343 -108756284 + AT_rich Low_complexity Low_complexity 1 26 0 360 329 64 7 chr9 9107010 9107150 -108755477 - MIR SINE MIR -78 184 37 2441 73 3 0 chr9 9108770 9109073 -108753554 + AluY SINE Alu 1 304 -7 294 230 23 46 chr9 9109299 9109386 -108753241 + MIR3 SINE MIR 118 202 -6 29 0 0 0 chr9 9109690 9109719 -108752908 + AT_rich Low_complexity Low_complexity 1 29 0 2266 120 20 3 chr9 9109854 9110203 -108752424 - THE1A LTR MaLR 0 355 1 2043 150 3 10 chr9 9110311 9110624 -108752003 + AluSx SINE Alu 1 311 -1 2135 117 0 7 chr9 9110731 9111030 -108751597 + AluY SINE Alu 1 297 -14 267 217 23 132 chr9 9111832 9111961 -108750666 + MER117 DNA MER1_type 57 171 -26 516 268 108 10 chr9 9112691 9112885 -108749742 - MLT1J2 LTR MaLR -15 435 223 339 302 19 38 chr9 9114626 9114785 -108747842 + L1M4 LINE L1 3339 3494 -2652 769 292 110 25 chr9 9115404 9115876 -108746751 - MLT1L LTR MaLR -2 613 102 269 303 193 29 chr9 9116826 9117100 -108745527 - L2 LINE L2 0 3313 2995 246 330 18 18 chr9 9117158 9117270 -108745357 - L2 LINE L2 -446 2868 2757 26 0 0 0 chr9 9117873 9117899 -108744728 + AT_rich Low_complexity Low_complexity 1 26 0 2310 114 0 3 chr9 9117903 9118209 -108744418 - AluSx SINE Alu -7 305 1 252 100 0 0 chr9 9118228 9118268 -108744359 + (TG)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr9 9119412 9119439 -108743188 + AT_rich Low_complexity Low_complexity 1 27 0 2179 96 0 0 chr9 9121387 9121658 -108740969 + AluSg SINE Alu 22 292 -18 2174 83 0 7 chr9 9121838 9122126 -108740501 + AluSp SINE Alu 1 286 -27 246 132 0 0 chr9 9122889 9122927 -108739700 - L2 LINE L2 -4 3268 3231 2165 76 21 14 chr9 9123101 9123392 -108739235 - AluSg SINE Alu -17 293 1 1257 308 78 54 chr9 9123829 9124625 -108738002 + L2 LINE L2 1795 2609 -705 325 258 0 22 chr9 9124820 9124909 -108737718 + GA-rich Low_complexity Low_complexity 2 88 0 1490 113 66 51 chr9 9125180 9125437 -108737190 + AluSg SINE Alu 49 309 -1 1096 116 24 0 chr9 9125716 9125880 -108736747 - AluSg/x SINE Alu -19 293 126 3972 161 19 48 chr9 9128708 9128877 -108733750 + L1MA8 LINE L1 5442 5614 -677 2360 96 0 16 chr9 9128877 9129190 -108733437 + AluSq SINE Alu 1 308 -5 3972 161 19 48 chr9 9129190 9129718 -108732909 + L1MA8 LINE L1 5614 6112 -179 2458 84 0 3 chr9 9129718 9130029 -108732598 + AluY SINE Alu 1 310 -1 3972 161 19 48 chr9 9130029 9130203 -108732424 + L1MA8 LINE L1 6112 6289 -2 431 312 89 46 chr9 9130387 9130624 -108732003 + MIR SINE MIR 13 259 -3 1972 153 3 0 chr9 9130820 9131121 -108731506 + AluJb SINE Alu 1 302 -10 24 32 0 0 chr9 9131782 9131813 -108730814 + AT_rich Low_complexity Low_complexity 1 31 0 364 277 23 39 chr9 9132073 9132203 -108730424 - MER5B DNA MER1_type 0 178 51 725 227 305 32 chr9 9132258 9132756 -108729871 + L1MC3 LINE L1 5684 6317 -1468 2257 71 0 4 chr9 9133223 9133504 -108729123 - AluSq SINE Alu -33 280 1 237 33 0 0 chr9 9134792 9134822 -108727805 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 837 230 56 136 chr9 9135034 9135482 -108727145 + L2 LINE L2 2852 3263 -50 21 0 0 0 chr9 9135950 9135971 -108726656 + AT_rich Low_complexity Low_complexity 1 21 0 367 336 9 9 chr9 9135971 9136087 -108726540 - MIR SINE MIR -144 118 3 272 75 0 0 chr9 9136582 9136622 -108726005 + MADE1 DNA Mariner 41 80 0 269 333 115 10 chr9 9137109 9137301 -108725326 + MER102b DNA MER1_type 105 316 -25 1077 190 109 16 chr9 9137402 9137649 -108724978 + AluJb SINE Alu 34 303 -9 302 354 104 17 chr9 9137847 9138087 -108724540 + L2 LINE L2 2496 2756 -558 354 345 53 18 chr9 9138088 9138259 -108724368 - MER5B DNA MER1_type -1 177 1 933 239 52 0 chr9 9140030 9140243 -108722384 + MER58A DNA MER1_type 1 224 0 201 74 0 0 chr9 9140333 9140360 -108722267 + (A)n Simple_repeat Simple_repeat 1 27 0 565 288 96 34 chr9 9140482 9140991 -108721636 - MLT1H LTR MaLR 0 555 1 21 0 0 0 chr9 9141524 9141545 -108721082 + AT_rich Low_complexity Low_complexity 1 21 0 2159 139 0 3 chr9 9141632 9141941 -108720686 + AluSx SINE Alu 1 308 -4 40 49 0 0 chr9 9141994 9142055 -108720572 + AT_rich Low_complexity Low_complexity 1 61 0 479 326 78 10 chr9 9142071 9142264 -108720363 - MIR SINE MIR 0 262 57 345 161 37 25 chr9 9142427 9142508 -108720119 + MER20 DNA MER1_type 1 82 -137 387 0 0 0 chr9 9142609 9142652 -108719975 + (TG)n Simple_repeat Simple_repeat 2 44 0 314 281 52 85 chr9 9143638 9143908 -108718719 + L2 LINE L2 2883 3143 -170 189 330 70 62 chr9 9144868 9145126 -108717501 + L2 LINE L2 2563 2822 -492 1594 172 0 14 chr9 9145154 9145433 -108717194 + AluJb SINE Alu 17 291 -21 754 200 16 11 chr9 9145466 9145656 -108716971 + L1MC4a LINE L1 7618 7808 0 22 35 0 0 chr9 9145760 9145789 -108716838 + AT_rich Low_complexity Low_complexity 1 29 0 345 342 17 8 chr9 9145796 9145913 -108716714 + L2 LINE L2 3189 3306 -7 601 313 84 13 chr9 9146107 9146334 -108716293 - MIR SINE MIR 0 262 20 363 73 0 0 chr9 9146496 9146551 -108716076 + (CA)n Simple_repeat Simple_repeat 2 56 0 909 120 15 0 chr9 9146791 9146924 -108715703 + AluJb SINE Alu 1 135 -177 417 109 0 0 chr9 9147069 9147133 -108715494 + (TA)n Simple_repeat Simple_repeat 2 65 0 1322 155 3 123 chr9 9147137 9147479 -108715148 + AluJo SINE Alu 2 302 0 770 219 26 0 chr9 9148117 9148304 -108714323 - AluJo SINE Alu 0 319 129 501 82 0 12 chr9 9148311 9148396 -108714231 - L1MB8 LINE L1 -2 6176 6093 2280 91 0 7 chr9 9148529 9148826 -108713801 + AluSp SINE Alu 1 295 -18 807 171 0 0 chr9 9148937 9149060 -108713567 - AluJo SINE Alu -188 124 2 2044 128 7 0 chr9 9149266 9149556 -108713071 + AluSx SINE Alu 6 297 -15 189 159 159 45 chr9 9150024 9150068 -108712559 + L2 LINE L2 3216 3264 -8 438 284 28 103 chr9 9150086 9150368 -108712259 - MIR SINE MIR 0 262 2 2458 72 0 0 chr9 9150538 9150844 -108711783 + AluY SINE Alu 1 306 -5 197 135 0 27 chr9 9155201 9155238 -108707389 - L2 LINE L2 -13 3300 3265 343 254 36 18 chr9 9155570 9155680 -108706947 - MER5A DNA MER1_type -7 182 71 2065 155 7 0 chr9 9155697 9156007 -108706620 - AluSx SINE Alu 0 312 1 467 118 15 0 chr9 9156051 9156119 -108706508 - MER5A DNA MER1_type -116 73 5 2177 122 3 7 chr9 9156191 9156495 -108706132 + AluSx SINE Alu 1 303 -9 2057 124 0 7 chr9 9158221 9158512 -108704115 - AluSg SINE Alu -21 289 1 689 245 32 68 chr9 9158979 9159333 -108703294 + L1MC5 LINE L1 6730 7050 -911 677 183 167 6 chr9 9159917 9160097 -108702530 + MER3 DNA MER1_type 1 209 0 2018 133 98 21 chr9 9160274 9160612 -108702015 + THE1B LTR MaLR 1 364 0 268 159 0 0 chr9 9160695 9160739 -108701888 + 5S rRNA rRNA 1 44 -77 2202 129 0 22 chr9 9162135 9162452 -108700175 - AluSg SINE Alu 0 310 1 708 158 44 27 chr9 9162789 9162972 -108699655 - L1MA8 LINE L1 0 6291 6106 602 250 17 28 chr9 9163451 9163627 -108699000 + MER20 DNA MER1_type 46 219 0 5858 119 15 18 chr9 9164134 9164355 -108698272 + L1PB1 LINE L1 4958 5178 -973 339 25 0 0 chr9 9164355 9164395 -108698232 + (TAA)n Simple_repeat Simple_repeat 2 41 0 5858 119 15 18 chr9 9164395 9165369 -108697258 + L1PB1 LINE L1 5178 6150 -1 250 342 71 27 chr9 9165674 9165858 -108696769 - MIR3 SINE MIR -1 207 16 261 0 0 0 chr9 9166348 9166377 -108696250 + (TC)n Simple_repeat Simple_repeat 2 30 0 1550 185 18 4 chr9 9166377 9166653 -108695974 - AluJo SINE Alu -28 284 5 828 169 0 0 chr9 9167275 9167405 -108695222 + FLAM_C SINE Alu 1 130 -3 4940 70 9 0 chr9 9167787 9168449 -108694178 + HERV17 LTR ERV1 5352 6019 -2607 285 51 0 0 chr9 9168442 9168481 -108694146 + HERV17 LTR ERV1 7510 7548 -1078 * 2229 52 10 0 chr9 9168471 9168760 -108693867 + HERV17 LTR ERV1 8335 8626 0 2392 40 28 31 chr9 9168760 9169087 -108693540 + LTR17 LTR ERV1 1 326 -454 255 125 0 0 chr9 9169087 9169127 -108693500 + (A)n Simple_repeat Simple_repeat 1 40 0 1795 166 3 7 chr9 9169193 9169489 -108693138 + AluSp SINE Alu 1 295 -18 242 168 74 11 chr9 9169573 9169668 -108692959 - Charlie7 DNA MER1_type -74 2538 2438 2000 136 3 23 chr9 9169742 9170052 -108692575 - AluSx SINE Alu -6 306 3 2144 115 0 0 chr9 9170404 9170692 -108691935 - AluSx SINE Alu -24 288 1 421 301 113 58 chr9 9170715 9171167 -108691460 - L2 LINE L2 -175 3138 2653 201 74 0 0 chr9 9171637 9171664 -108690963 + (A)n Simple_repeat Simple_repeat 1 27 0 883 254 53 82 chr9 9172111 9172312 -108690315 + MLT1H LTR MaLR 64 269 -280 4445 59 0 4 chr9 9172312 9172868 -108689759 + MER41A LTR ERV1 1 554 0 883 254 53 82 chr9 9172868 9173167 -108689460 + MLT1H LTR MaLR 269 549 0 1678 250 69 30 chr9 9173938 9174097 -108688530 + L1ME LINE L1 4381 4532 -1614 2193 107 0 0 chr9 9174097 9174387 -108688240 + AluSx SINE Alu 1 290 -22 1678 250 69 30 chr9 9174387 9175058 -108687569 + L1ME LINE L1 4532 5243 -903 878 273 92 30 chr9 9175122 9175482 -108687145 + L1ME LINE L1 5325 5722 -448 2329 91 3 0 chr9 9175482 9175780 -108686847 + AluSq SINE Alu 1 299 -14 878 273 92 30 chr9 9175780 9175885 -108686742 + L1ME LINE L1 5722 5819 -351 278 257 73 37 chr9 9176360 9176469 -108686158 + MIR SINE MIR 17 129 -79 212 279 39 84 chr9 9176444 9176598 -108686029 + L2 LINE L2 3081 3227 -86 * 907 169 46 62 chr9 9177048 9177243 -108685384 + AluJb SINE Alu 117 308 -4 2044 135 0 0 chr9 9177453 9177734 -108684893 - AluSx SINE Alu -31 281 1 1531 198 7 7 chr9 9177797 9178090 -108684537 + AluJb SINE Alu 1 293 -19 336 274 161 0 chr9 9178665 9178789 -108683838 - MIR SINE MIR -70 192 49 526 141 0 0 chr9 9179072 9179150 -108683477 + AluSg/x SINE Alu 207 284 -26 482 119 12 0 chr9 9179609 9179693 -108682934 + (TA)n Simple_repeat Simple_repeat 1 85 0 868 201 46 0 chr9 9180205 9180399 -108682228 - MER105 DNA DNA -1 203 1 500 65 0 0 chr9 9180766 9180828 -108681799 - AluY SINE Alu -16 296 235 1306 81 0 0 chr9 9180829 9180989 -108681638 - AluY SINE Alu -151 160 1 1659 169 0 72 chr9 9181037 9181356 -108681271 - AluJb SINE Alu -16 296 1 214 244 0 47 chr9 9181598 9181684 -108680943 + T-rich Low_complexity Low_complexity 1 82 0 985 114 0 0 chr9 9182062 9182194 -108680433 - AluSx SINE Alu -139 173 42 273 29 0 0 chr9 9182599 9182633 -108679994 + (TG)n Simple_repeat Simple_repeat 1 34 0 2132 117 3 3 chr9 9184191 9184491 -108678136 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr9 9185598 9185620 -108677007 + (T)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chr9 9185810 9185836 -108676791 + AT_rich Low_complexity Low_complexity 1 26 0 267 365 19 10 chr9 9185919 9186023 -108676604 + MER5A DNA MER1_type 72 176 -13 184 280 227 8 chr9 9186129 9186261 -108676366 - MIR3 SINE MIR -11 197 37 222 281 61 24 chr9 9186492 9186574 -108676053 - MIR SINE MIR -115 147 63 295 211 14 0 chr9 9187766 9187837 -108674790 - Charlie8 DNA MER1_type -2272 145 74 338 289 13 39 chr9 9187995 9188151 -108674476 - LTR16C LTR ERVL -244 247 96 192 238 0 0 chr9 9189374 9189437 -108673190 + (TA)n Simple_repeat Simple_repeat 1 63 0 454 391 55 19 chr9 9189963 9190385 -108672242 + L3 LINE CR1 284 720 -857 1233 180 0 21 chr9 9190569 9190808 -108671819 - AluJo SINE Alu -78 234 1 292 301 159 51 chr9 9191071 9191247 -108671380 + L2 LINE L2 3068 3262 -10 194 277 15 46 chr9 9193504 9193569 -108669058 - L2 LINE L2 -37 3276 3214 993 168 19 93 chr9 9194552 9194766 -108667861 + AluJo SINE Alu 85 282 -30 27 100 0 0 chr9 9195408 9195498 -108667129 + AT_rich Low_complexity Low_complexity 1 90 0 1969 150 3 7 chr9 9196207 9196501 -108666126 + AluSx SINE Alu 1 293 -19 210 167 37 19 chr9 9196517 9196571 -108666056 + (TATAA)n Simple_repeat Simple_repeat 3 57 0 1909 137 18 0 chr9 9197493 9197813 -108664814 + AluSg SINE Alu 1 325 0 1644 201 67 93 chr9 9198138 9198720 -108663907 + MLT1F1 LTR MaLR 1 567 0 323 319 37 37 chr9 9198757 9198920 -108663707 + MIR3 SINE MIR 14 176 -32 193 277 12 72 chr9 9199063 9199108 -108663519 + L3 LINE CR1 1497 1536 -41 4586 164 33 9 chr9 9199108 9199953 -108662674 + MER6 DNA MER2_type 1 865 0 193 277 12 72 chr9 9199953 9199990 -108662637 + L3 LINE CR1 1536 1574 -3 2366 94 3 0 chr9 9200095 9200393 -108662234 - AluSq SINE Alu -13 300 2 329 319 76 14 chr9 9200397 9200541 -108662086 + L1MC/D LINE L1 5607 5759 -2049 696 203 21 112 chr9 9200625 9200812 -108661815 + MER5B DNA MER1_type 8 177 -1 816 199 0 53 chr9 9201094 9201265 -108661362 + AluJo SINE Alu 5 166 -146 1623 167 7 14 chr9 9201266 9201542 -108661085 + AluJb SINE Alu 21 294 -18 22 0 0 0 chr9 9202096 9202118 -108660509 + AT_rich Low_complexity Low_complexity 1 22 0 2116 115 3 13 chr9 9202976 9203290 -108659337 + AluSx SINE Alu 1 311 -1 2357 66 0 7 chr9 9203876 9204163 -108658464 + AluY SINE Alu 2 286 -25 21 0 0 0 chr9 9204473 9204494 -108658133 + AT_rich Low_complexity Low_complexity 1 21 0 887 68 38 8 chr9 9204632 9204764 -108657863 + L1MA3 LINE L1 6169 6304 -1 225 0 0 0 chr9 9204793 9204818 -108657809 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3462 225 40 67 chr9 9204856 9205072 -108657555 - L1MEc LINE L1 -5243 1153 933 1518 164 25 0 chr9 9205072 9205316 -108657311 + AluJo SINE Alu 50 299 -13 3462 225 40 67 chr9 9205316 9206248 -108656379 - L1MEc LINE L1 -5463 933 36 367 354 76 8 chr9 9206248 9206590 -108656037 + L2 LINE L2 2688 3051 -221 222 170 208 0 chr9 9206753 9206806 -108655821 + MIR SINE MIR 88 151 -111 2544 65 3 0 chr9 9207184 9207490 -108655137 - AluSp SINE Alu -6 307 1 427 159 0 0 chr9 9208243 9208312 -108654315 - L1PA16 LINE L1 -9 6157 6089 892 142 0 0 chr9 9208358 9208485 -108654142 + FLAM_C SINE Alu 1 127 -16 1611 176 38 3 chr9 9208959 9209248 -108653379 - AluJb SINE Alu -13 299 1 417 116 64 23 chr9 9209448 9209621 -108653006 + (TA)n Simple_repeat Simple_repeat 1 180 0 1514 136 31 19 chr9 9209642 9209900 -108652727 - AluJb SINE Alu -15 297 37 488 325 12 0 chr9 9211392 9211561 -108651066 + MIR SINE MIR 66 236 -26 704 136 179 0 chr9 9214830 9214992 -108647635 - L1MA8 LINE L1 -22 6269 6079 899 108 7 0 chr9 9214994 9215133 -108647494 - L1MA8 LINE L1 -131 6160 6021 2309 84 7 7 chr9 9215253 9215552 -108647075 - AluSg SINE Alu -11 299 1 409 326 54 33 chr9 9216095 9216279 -108646348 - MIR SINE MIR -26 236 49 333 0 0 0 chr9 9218714 9218751 -108643876 + (TG)n Simple_repeat Simple_repeat 2 38 0 2282 96 0 16 chr9 9219080 9219393 -108643234 - AluSx SINE Alu -2 310 3 325 151 0 0 chr9 9219591 9219644 -108642983 - AluJo SINE Alu -8 294 242 1146 139 12 6 chr9 9219644 9219816 -108642811 - AluJo SINE Alu -139 173 1 257 237 26 26 chr9 9219831 9219907 -108642720 - MARNA DNA Mariner -51 535 460 256 275 0 46 chr9 9220300 9220409 -108642218 + GA-rich Low_complexity Low_complexity 4 107 0 2428 75 3 28 chr9 9220935 9221255 -108641372 - AluSp SINE Alu -1 312 1 418 231 74 133 chr9 9221553 9221756 -108640871 - MIR SINE MIR 0 262 72 26 30 0 0 chr9 9222469 9222502 -108640125 + AT_rich Low_complexity Low_complexity 1 33 0 2060 121 7 0 chr9 9222524 9222813 -108639814 + AluSx SINE Alu 1 291 -21 516 284 35 12 chr9 9223326 9223495 -108639132 - MIR SINE MIR -74 188 16 26 50 0 0 chr9 9223553 9223593 -108639034 + AT_rich Low_complexity Low_complexity 1 40 0 246 32 0 0 chr9 9224418 9224449 -108638178 + (TC)n Simple_repeat Simple_repeat 1 31 0 2148 93 4 0 chr9 9224827 9225105 -108637522 - AluSg1 SINE Alu -30 279 1 373 264 24 16 chr9 9225831 9225954 -108636673 - MIR SINE MIR -78 130 30 211 285 98 24 chr9 9226035 9226158 -108636469 + L2 LINE L2 2629 2760 -554 464 319 109 22 chr9 9226240 9226597 -108636030 + L2 LINE L2 1983 2370 -944 990 143 22 28 chr9 9226619 9226801 -108635826 + AluJb SINE Alu 108 288 -24 267 20 0 78 chr9 9226802 9226853 -108635774 + (GGAAA)n Simple_repeat Simple_repeat 1 47 0 3854 121 4 0 chr9 9226873 9227425 -108635202 - MER41A LTR ERV1 0 554 1 8245 129 37 3 chr9 9227425 9228722 -108633905 - MER41A-int LTR ERV1 -2 5944 4604 3491 110 24 0 chr9 9228728 9229238 -108633389 - MER41A LTR ERV1 -32 522 1 578 348 92 20 chr9 9229335 9229953 -108632674 + L2 LINE L2 2589 3256 -16 279 345 43 75 chr9 9230070 9230177 -108632450 + L2 LINE L2 2933 3042 -230 211 53 26 26 chr9 9230177 9230215 -108632412 + (CA)n Simple_repeat Simple_repeat 2 39 0 279 345 43 75 chr9 9230215 9230362 -108632265 + L2 LINE L2 3042 3179 -93 2155 128 0 0 chr9 9230470 9230766 -108631861 + AluSx SINE Alu 3 298 -14 21 0 0 0 chr9 9231052 9231073 -108631554 + AT_rich Low_complexity Low_complexity 1 21 0 1731 187 25 8 chr9 9231363 9231716 -108630911 + MLT1A1 LTR MaLR 5 363 -2 1323 189 41 78 chr9 9232252 9232639 -108629988 - L1ME2 LINE L1 -1 6163 5791 390 305 102 11 chr9 9232863 9233050 -108629577 + MIR SINE MIR 1 204 -58 863 265 12 31 chr9 9233169 9233426 -108629201 - MIR SINE MIR -7 255 4 229 333 0 26 chr9 9234201 9234279 -108628348 - MIR3 SINE MIR -24 184 109 483 230 37 12 chr9 9235526 9235687 -108626940 + L1M4 LINE L1 4949 5113 -1033 1690 200 3 0 chr9 9235784 9236079 -108626548 - AluJo SINE Alu -16 296 1 202 230 27 68 chr9 9236101 9236175 -108626452 + L2 LINE L2 3158 3228 -85 1107 115 0 0 chr9 9236175 9236332 -108626295 - AluSg/x SINE Alu -6 304 148 213 253 152 25 chr9 9236333 9236412 -108626215 + L2 LINE L2 3225 3313 0 653 222 31 25 chr9 9236603 9236765 -108625862 - MER3 DNA MER1_type -46 163 1 2386 101 0 0 chr9 9236978 9237285 -108625342 - AluSg SINE Alu -1 309 3 753 115 0 0 chr9 9237287 9237400 -108625227 - AluSg/x SINE Alu -8 302 190 237 315 14 0 chr9 9238546 9238619 -108624008 + CT-rich Low_complexity Low_complexity 4 77 0 196 354 31 0 chr9 9238765 9238830 -108623797 - MIR SINE MIR -75 133 67 1590 221 127 43 chr9 9238847 9239336 -108623291 + MLT1F LTR MaLR 4 533 -9 797 188 0 0 chr9 9240273 9240406 -108622221 - FLAM_A SINE Alu 0 133 1 1975 120 7 14 chr9 9240939 9241231 -108621396 - AluSx SINE Alu -22 290 1 22 0 0 0 chr9 9242055 9242077 -108620550 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr9 9242635 9242672 -108619955 + AT_rich Low_complexity Low_complexity 1 37 0 291 146 21 0 chr9 9242909 9242957 -108619670 + U7 snRNA snRNA 14 62 -1 24 0 0 0 chr9 9242965 9242989 -108619638 + AT_rich Low_complexity Low_complexity 1 24 0 253 344 82 41 chr9 9243498 9243620 -108619007 + L2 LINE L2 3127 3253 -19 688 163 16 8 chr9 9243633 9243756 -108618871 - FRAM SINE Alu -10 166 43 270 330 54 9 chr9 9244380 9244492 -108618135 - L2 LINE L2 0 3313 3197 216 325 76 45 chr9 9244603 9244760 -108617867 + MIR SINE MIR 26 187 -75 4167 79 2 2 chr9 9246052 9246606 -108616021 + MER41A LTR ERV1 1 554 0 325 313 27 27 chr9 9246689 9246801 -108615826 + MIR SINE MIR 34 145 -63 1978 114 10 10 chr9 9247199 9247489 -108615138 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr9 9247491 9247514 -108615113 + AT_rich Low_complexity Low_complexity 1 23 0 205 262 0 0 chr9 9247667 9247709 -108614918 + polypurine Low_complexity Low_complexity 4 45 0 295 267 80 0 chr9 9248458 9248533 -108614094 + MIR SINE MIR 67 147 -115 1606 186 0 18 chr9 9248534 9248814 -108613813 + AluJo SINE Alu 1 275 -37 237 277 12 12 chr9 9248843 9248926 -108613701 + MIR SINE MIR 136 218 -44 201 180 0 0 chr9 9249564 9249614 -108613013 + CT-rich Low_complexity Low_complexity 1 50 0 288 0 0 0 chr9 9250504 9250536 -108612091 + (CA)n Simple_repeat Simple_repeat 2 33 0 416 258 32 39 chr9 9251334 9251489 -108611138 - MIR SINE MIR 0 262 109 476 276 32 101 chr9 9252199 9252307 -108610320 + L2 LINE L2 3027 3141 -172 1838 154 6 28 chr9 9252307 9252625 -108610002 - AluJb SINE Alu 0 312 2 476 276 32 101 chr9 9252625 9252824 -108609803 + L2 LINE L2 3141 3313 0 2054 75 0 4 chr9 9253376 9253631 -108608996 - AluSc SINE Alu -2 307 54 2110 108 38 0 chr9 9253814 9254102 -108608525 - AluSx SINE Alu -12 300 2 1547 214 20 17 chr9 9254271 9254285 -108608342 - AluJb SINE Alu 0 312 300 226 0 0 0 chr9 9254285 9254310 -108608317 + (TTTTG)n Simple_repeat Simple_repeat 1 125 0 1547 214 20 17 chr9 9254310 9254590 -108608037 - AluJb SINE Alu -12 300 1 2115 107 4 0 chr9 9256089 9256413 -108606214 - AluSx SINE Alu 0 325 1 2272 123 51 14 chr9 9256973 9257324 -108605303 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 9258216 9258239 -108604388 + AT_rich Low_complexity Low_complexity 1 23 0 2159 102 3 0 chr9 9258518 9258811 -108603816 + AluSx SINE Alu 1 294 -18 274 242 121 0 chr9 9259735 9259834 -108602793 - MER94 DNA DNA -23 111 1 565 230 54 7 chr9 9260254 9260402 -108602225 + MER3 DNA MER1_type 2 156 -53 200 266 165 25 chr9 9260663 9260742 -108601885 + MIR3 SINE MIR 93 182 -26 27 0 0 0 chr9 9262960 9262987 -108599640 + AT_rich Low_complexity Low_complexity 1 27 0 493 308 66 85 chr9 9263144 9263773 -108598854 - L2 LINE L2 -41 3231 2635 1622 162 0 46 chr9 9265109 9265393 -108597234 - AluJo SINE Alu 0 312 42 360 300 34 11 chr9 9265513 9265660 -108596967 + MIR SINE MIR 6 152 -64 236 328 16 55 chr9 9265768 9265896 -108596731 + MIR SINE MIR 132 254 -8 1358 103 5 0 chr9 9266091 9266275 -108596352 - AluY SINE Alu -7 304 120 1490 47 0 0 chr9 9266275 9266446 -108596181 - AluY SINE Alu -140 171 1 362 303 0 18 chr9 9268659 9268768 -108593859 - MIR SINE MIR -108 154 48 21 0 0 0 chr9 9269941 9269962 -108592665 + AT_rich Low_complexity Low_complexity 1 21 0 6577 48 22 0 chr9 9270764 9271595 -108591032 + L1PA7 LINE L1 5306 6154 0 474 252 23 8 chr9 9271728 9271859 -108590768 + MIR3 SINE MIR 70 202 -6 180 398 11 0 chr9 9272251 9272339 -108590288 - L2 LINE L2 -44 3228 3140 186 262 0 0 chr9 9272405 9272447 -108590180 + L2 LINE L2 3256 3297 -16 371 329 29 61 chr9 9272515 9272761 -108589866 - L2 LINE L2 -196 3076 2839 24 0 0 0 chr9 9272939 9272963 -108589664 + AT_rich Low_complexity Low_complexity 1 24 0 12442 86 9 120 chr9 9277196 9278840 -108583787 - L1P LINE L1 -1116 5030 3746 7467 39 0 2 chr9 9278840 9280523 -108582104 - L1PA5 LINE L1 -9 6145 4465 12442 86 9 120 chr9 9280523 9281336 -108581291 - L1P LINE L1 -2400 3746 2845 6110 100 8 0 chr9 9281332 9282201 -108580426 - L1P3 LINE L1 -5584 877 2 * 198 0 0 0 chr9 9282212 9282234 -108580393 + (T)n Simple_repeat Simple_repeat 1 22 0 1662 62 40 22 chr9 9282459 9282685 -108579942 + MER30 DNA MER1_type 1 230 0 1982 120 0 0 chr9 9282775 9283088 -108579539 - AluSx SINE Alu 0 313 1 272 330 42 25 chr9 9283348 9283466 -108579161 + MER5B DNA MER1_type 20 139 -39 218 266 107 130 chr9 9283353 9283469 -108579158 - MER5A DNA MER1_type -24 165 53 * 2260 124 0 0 chr9 9283469 9283768 -108578859 - AluSx SINE Alu -13 299 1 218 266 107 130 chr9 9283768 9283820 -108578807 - MER5A DNA MER1_type -136 53 1 1977 93 0 99 chr9 9284613 9284937 -108577690 - AluSc SINE Alu -17 292 1 2334 103 0 0 chr9 9284943 9285316 -108577311 - AluSx SINE Alu 0 373 1 23 0 0 0 chr9 9286030 9286053 -108576574 + AT_rich Low_complexity Low_complexity 1 23 0 313 303 33 49 chr9 9287030 9287274 -108575353 + L2 LINE L2 2090 2329 -985 864 82 0 0 chr9 9287569 9287704 -108574923 + (TA)n Simple_repeat Simple_repeat 2 136 0 2275 95 34 0 chr9 9288078 9288373 -108574254 + AluSx SINE Alu 1 305 -7 237 386 44 0 chr9 9289108 9289222 -108573405 - MIR SINE MIR -20 242 124 314 252 115 43 chr9 9289851 9289990 -108572637 - MIR3 SINE MIR -23 185 37 180 0 0 0 chr9 9290266 9290286 -108572341 + (TG)n Simple_repeat Simple_repeat 2 21 0 201 178 22 22 chr9 9290286 9290322 -108572305 + GA-rich Low_complexity Low_complexity 7 45 0 1156 321 147 29 chr9 9290342 9291068 -108571559 + L2 LINE L2 1992 2803 -511 182 128 26 0 chr9 9291127 9291166 -108571461 + (TA)n Simple_repeat Simple_repeat 2 41 0 319 265 76 53 chr9 9291246 9291378 -108571249 + L2 LINE L2 3178 3312 -1 21 71 0 0 chr9 9292180 9292222 -108570405 + AT_rich Low_complexity Low_complexity 1 42 0 5058 175 16 4 chr9 9292416 9293643 -108568984 + L1PA16 LINE L1 4921 6166 0 576 312 153 14 chr9 9294138 9294503 -108568124 + L3b LINE CR1 1102 1517 -66 36 0 0 0 chr9 9294738 9294774 -108567853 + AT_rich Low_complexity Low_complexity 1 36 0 195 129 0 0 chr9 9295565 9295596 -108567031 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 479 240 199 14 chr9 9295942 9296088 -108566539 + MER5B DNA MER1_type 1 173 -5 368 333 89 7 chr9 9296731 9296866 -108565761 + L2 LINE L2 3123 3268 -4 284 208 0 0 chr9 9298276 9298329 -108564298 - L2 LINE L2 0 3313 3261 685 297 53 12 chr9 9299165 9299411 -108563216 + MIR SINE MIR 6 261 -1 450 309 20 56 chr9 9299811 9300060 -108562567 + MIR SINE MIR 23 262 0 296 339 17 44 chr9 9300234 9300414 -108562213 - L2 LINE L2 -173 3099 2925 270 319 0 0 chr9 9301229 9301298 -108561329 - L2 LINE L2 -4 3268 3200 234 62 0 0 chr9 9301661 9301693 -108560934 + (GA)n Simple_repeat Simple_repeat 2 33 0 649 223 120 12 chr9 9302077 9302319 -108560308 + L1ME3A LINE L1 5682 5949 -221 475 194 0 9 chr9 9302595 9302703 -108559924 - L1 LINE L1 -2198 3948 3842 225 132 0 0 chr9 9302876 9302914 -108559713 + (TCC)n Simple_repeat Simple_repeat 1 38 0 336 83 0 0 chr9 9303030 9303078 -108559549 + (TCC)n Simple_repeat Simple_repeat 2 49 0 230 241 0 19 chr9 9303117 9303171 -108559456 + CT-rich Low_complexity Low_complexity 3 55 0 507 45 0 0 chr9 9303741 9303807 -108558820 + (CA)n Simple_repeat Simple_repeat 2 67 0 270 314 137 8 chr9 9305712 9305836 -108556791 - MIR3 SINE MIR -62 146 7 270 262 0 0 chr9 9305938 9305999 -108556628 + MIR3 SINE MIR 138 198 -10 258 224 155 17 chr9 9306247 9306363 -108556264 - MER112 DNA MER1_type -9 251 120 28 0 0 0 chr9 9306366 9306394 -108556233 + AT_rich Low_complexity Low_complexity 1 28 0 505 243 81 29 chr9 9306448 9306621 -108556006 - MIR SINE MIR -70 192 11 2223 103 3 0 chr9 9307019 9307309 -108555318 + AluSx SINE Alu 1 291 -21 2466 42 7 0 chr9 9307717 9308025 -108554602 + L1PA3 LINE L1 5846 6155 0 230 290 58 77 chr9 9311358 9311565 -108551062 + L2 LINE L2 2550 2752 -562 223 231 13 13 chr9 9312190 9312268 -108550359 + CT-rich Low_complexity Low_complexity 2 79 0 336 286 76 25 chr9 9313104 9313223 -108549404 + MER5B DNA MER1_type 4 128 -50 1919 125 7 17 chr9 9313243 9313532 -108549095 - AluSx SINE Alu -26 286 1 248 217 33 0 chr9 9313534 9313594 -108549033 - MER5B DNA MER1_type -115 63 2 285 227 40 13 chr9 9314537 9314612 -108548015 + MER5A DNA MER1_type 87 163 -26 378 0 0 0 chr9 9315716 9315758 -108546869 + (CA)n Simple_repeat Simple_repeat 2 43 0 367 264 164 0 chr9 9318153 9318263 -108544364 + L2 LINE L2 3145 3272 0 553 283 45 60 chr9 9318275 9318540 -108544087 + L2 LINE L2 3043 3303 -10 205 190 69 17 chr9 9319191 9319249 -108543378 - MIR SINE MIR -110 152 92 293 299 80 37 chr9 9319761 9319948 -108542679 + MIR SINE MIR 57 251 -11 221 246 49 0 chr9 9320167 9320228 -108542399 + MIR SINE MIR 128 191 -71 839 169 41 52 chr9 9320342 9320514 -108542113 + AluJo SINE Alu 4 173 -139 381 327 70 0 chr9 9320841 9320997 -108541630 + MIR SINE MIR 13 179 -83 311 261 121 48 chr9 9321003 9321168 -108541459 + MLT1L LTR MaLR 437 613 -2 3050 131 59 85 chr9 9322657 9322697 -108539930 - L1MA9 LINE L1 -2 6310 6270 261 0 0 0 chr9 9322697 9322726 -108539901 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 753 71 0 0 chr9 9322725 9322838 -108539789 + (TA)n Simple_repeat Simple_repeat 1 113 0 3050 131 59 85 chr9 9322726 9323446 -108539181 - L1MA9 LINE L1 -42 6270 5679 1292 151 21 45 chr9 9323445 9323736 -108538891 + L1 LINE L1 4178 4461 -1685 * 1802 155 0 50 chr9 9324434 9324757 -108537870 + AluJb SINE Alu 3 309 -3 227 336 60 87 chr9 9326224 9326373 -108536254 - L2 LINE L2 -1 3271 3127 386 154 13 0 chr9 9326546 9326624 -108536003 + GA-rich Low_complexity Low_complexity 3 81 0 196 30 61 0 chr9 9328164 9328197 -108534430 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2189 99 0 35 chr9 9328584 9328897 -108533730 - AluSx SINE Alu -10 302 1 288 0 0 0 chr9 9329131 9329163 -108533464 + (ATG)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr9 9329475 9329503 -108533124 + AT_rich Low_complexity Low_complexity 1 28 0 203 250 26 13 chr9 9329657 9329733 -108532894 + (TA)n Simple_repeat Simple_repeat 1 77 0 411 245 93 29 chr9 9329775 9329914 -108532713 + MIR SINE MIR 59 206 -56 21 0 0 0 chr9 9329934 9329955 -108532672 + AT_rich Low_complexity Low_complexity 1 21 0 2195 106 0 0 chr9 9330095 9330409 -108532218 - AluSq SINE Alu 0 314 1 5783 160 19 36 chr9 9331131 9333232 -108529395 + L1MA3 LINE L1 4185 6174 -131 697 191 14 7 chr9 9333358 9333505 -108529122 + L1MA3 LINE L1 6158 6305 0 419 343 77 0 chr9 9334157 9334326 -108528301 + L2 LINE L2 2872 3053 -219 238 244 215 15 chr9 9334820 9334955 -108527672 + MIR SINE MIR 52 213 -49 403 283 6 24 chr9 9335293 9335459 -108527168 + CT-rich Low_complexity Low_complexity 2 164 0 210 71 0 0 chr9 9335462 9335490 -108527137 + (T)n Simple_repeat Simple_repeat 1 28 0 2185 123 0 0 chr9 9335730 9336039 -108526588 - AluSc SINE Alu 0 309 1 24 67 0 0 chr9 9336292 9336337 -108526290 + AT_rich Low_complexity Low_complexity 1 45 0 1378 199 31 50 chr9 9337330 9337647 -108524980 - AluJo SINE Alu -1 311 1 189 74 0 0 chr9 9338188 9338215 -108524412 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 242 261 17 118 chr9 9338229 9338348 -108524279 - L2 LINE L2 -19 3253 3147 1437 163 103 39 chr9 9339599 9339881 -108522746 - AluJb SINE Alu -12 300 1 362 264 96 56 chr9 9339936 9340061 -108522566 - L2 LINE L2 0 3272 3143 515 274 39 39 chr9 9341101 9341254 -108521373 - MIR3 SINE MIR -22 186 34 1993 153 0 0 chr9 9341417 9341711 -108520916 + AluSx SINE Alu 1 294 -18 348 264 44 0 chr9 9341911 9342002 -108520625 - MIR SINE MIR 0 262 168 219 371 35 28 chr9 9342846 9343007 -108519620 - MIR SINE MIR -62 146 25 264 250 14 14 chr9 9343616 9343688 -108518939 - L2 LINE L2 0 3313 3242 312 305 166 11 chr9 9344000 9344085 -108518542 - MIR SINE MIR -43 219 149 583 198 27 0 chr9 9344085 9344196 -108518431 + MER81 DNA DNA 1 114 0 312 305 166 11 chr9 9344196 9344297 -108518330 - MIR SINE MIR -113 149 4 2196 127 0 0 chr9 9344303 9344611 -108518016 - AluSq SINE Alu -5 308 1 21 0 0 0 chr9 9345197 9345218 -108517409 + AT_rich Low_complexity Low_complexity 1 21 0 724 293 19 38 chr9 9345764 9346030 -108516597 - MIR SINE MIR 0 262 2 563 324 22 21 chr9 9347610 9347819 -108514808 + MIR SINE MIR 2 213 -49 245 106 0 21 chr9 9348064 9348111 -108514516 + (GA)n Simple_repeat Simple_repeat 1 46 0 460 204 11 11 chr9 9348121 9348214 -108514413 + L2 LINE L2 3180 3272 0 21 0 0 0 chr9 9348264 9348285 -108514342 + AT_rich Low_complexity Low_complexity 1 21 0 4553 92 6 0 chr9 9348285 9348917 -108513710 - L1PB1 LINE L1 -3 6148 5513 2430 55 3 0 chr9 9349953 9350244 -108512383 - AluY SINE Alu -17 294 3 185 255 39 39 chr9 9351166 9351217 -108511410 - MIR3 SINE MIR -18 190 140 * 195 337 22 22 chr9 9351209 9351301 -108511326 - L2 LINE L2 -18 3295 3204 309 227 34 11 chr9 9351308 9351396 -108511231 + L1MCa LINE L1 1979 2068 -4358 * 319 262 71 0 chr9 9351373 9351457 -108511170 + L1MC4 LINE L1 6894 6983 -1339 339 311 0 0 chr9 9351463 9351553 -108511074 + L1MC4 LINE L1 6614 6703 -1339 229 265 0 0 chr9 9352354 9352403 -108510224 + L1ME3A LINE L1 5480 5528 -638 865 303 52 19 chr9 9352839 9352886 -108509741 + L1ME3A LINE L1 5783 5827 -343 2184 128 0 3 chr9 9352886 9353190 -108509437 + AluSq SINE Alu 1 303 -10 865 303 52 19 chr9 9353190 9353508 -108509119 + L1ME3A LINE L1 5827 6160 -10 255 346 6 58 chr9 9356605 9356761 -108505866 + MIR SINE MIR 65 212 -50 21 71 0 0 chr9 9358957 9358999 -108503628 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9359319 9359340 -108503287 + AT_rich Low_complexity Low_complexity 1 21 0 429 264 30 85 chr9 9360246 9360447 -108502180 - MIR SINE MIR -40 222 33 255 330 62 36 chr9 9360710 9360822 -108501805 + MIR3 SINE MIR 45 159 -49 349 350 34 28 chr9 9361031 9361145 -108501482 + MER5A DNA MER1_type 9 126 -63 2162 127 0 6 chr9 9361145 9361459 -108501168 - AluSx SINE Alu 0 312 1 349 350 34 28 chr9 9361459 9361521 -108501106 + MER5A DNA MER1_type 126 186 -3 763 168 7 13 chr9 9361962 9362111 -108500516 - L1PA16 LINE L1 0 6166 6019 194 250 60 0 chr9 9362470 9362537 -108500090 + MIR SINE MIR 68 141 -67 809 261 72 13 chr9 9362837 9363143 -108499484 - L1MC4 LINE L1 0 8042 7719 2030 139 14 0 chr9 9363204 9363499 -108499128 + AluSx SINE Alu 1 299 -13 2108 130 0 0 chr9 9364271 9364570 -108498057 + AluSx SINE Alu 1 299 -13 478 299 36 0 chr9 9365186 9365323 -108497304 + MIR SINE MIR 58 199 -63 376 280 37 49 chr9 9365900 9366143 -108496484 + L1MB8 LINE L1 892 1131 -5411 1271 122 0 0 chr9 9366180 9366348 -108496279 + AluY SINE Alu 130 300 -11 189 0 0 0 chr9 9366348 9366369 -108496258 + (TA)n Simple_repeat Simple_repeat 2 22 0 1271 122 0 0 chr9 9366369 9366380 -108496247 + AluY SINE Alu 299 309 -2 2055 279 45 13 chr9 9366390 9367176 -108495451 + L1MB8 LINE L1 1249 2059 -4587 4425 246 57 70 chr9 9367181 9368792 -108493835 + L1MB8 LINE L1 3253 4884 -1792 2667 124 11 30 chr9 9368792 9368835 -108493792 + MSTC LTR MaLR 1 43 -385 2205 78 4 0 chr9 9368835 9369151 -108493476 - AluY SINE Alu 0 317 1 2667 124 11 30 chr9 9369151 9369542 -108493085 + MSTC LTR MaLR 43 428 0 4425 246 57 70 chr9 9369542 9370203 -108492424 + L1MB8 LINE L1 4884 5552 -1124 404 19 19 0 chr9 9370203 9370256 -108492371 + (TG)n Simple_repeat Simple_repeat 1 54 0 4425 246 57 70 chr9 9370256 9371470 -108491157 + L1MB8 LINE L1 5552 6674 -2 23 0 0 0 chr9 9371522 9371545 -108491082 + AT_rich Low_complexity Low_complexity 1 23 0 224 345 129 38 chr9 9371578 9371787 -108490840 + MIR SINE MIR 34 261 -1 24 53 0 0 chr9 9372348 9372386 -108490241 + AT_rich Low_complexity Low_complexity 1 38 0 381 302 30 59 chr9 9372708 9372910 -108489717 - L2 LINE L2 0 3313 3118 3077 221 89 17 chr9 9372925 9373756 -108488871 - MER97a DNA MER1_type 0 894 4 244 352 69 110 chr9 9373802 9374194 -108488433 - L2 LINE L2 -366 2948 2573 276 290 0 50 chr9 9374288 9374388 -108488239 + (TATATG)n Simple_repeat Simple_repeat 5 99 0 313 248 58 9 chr9 9374388 9374529 -108488098 - MLT2D LTR ERVL -109 411 238 183 80 0 0 chr9 9374867 9374892 -108487735 + (T)n Simple_repeat Simple_repeat 1 25 0 1989 108 16 32 chr9 9374942 9375258 -108487369 - AluSq SINE Alu -2 311 1 249 108 0 0 chr9 9376376 9376413 -108486214 + (TG)n Simple_repeat Simple_repeat 1 37 0 1940 126 4 0 chr9 9376953 9377230 -108485397 + AluSx SINE Alu 22 299 -13 262 186 23 23 chr9 9377508 9377594 -108485033 + (CATG)n Simple_repeat Simple_repeat 2 87 0 459 182 36 24 chr9 9377632 9377797 -108484830 + (CATG)n Simple_repeat Simple_repeat 1 167 0 1717 161 21 3 chr9 9377880 9378166 -108484461 + AluSx SINE Alu 1 291 -21 4956 239 35 22 chr9 9378302 9378389 -108484238 - L1P LINE L1 -2274 3872 3788 1722 174 21 0 chr9 9378389 9378676 -108483951 - AluJo SINE Alu -19 293 1 4956 239 35 22 chr9 9378676 9379858 -108482769 - L1P LINE L1 -2358 3788 2579 2146 109 10 16 chr9 9379858 9380161 -108482466 + AluSx SINE Alu 1 301 -11 4956 239 35 22 chr9 9380161 9380387 -108482240 - L1P LINE L1 -3567 2579 2357 5688 168 23 57 chr9 9380387 9382329 -108480298 + L1PA16 LINE L1 3977 5888 -278 6298 36 0 3 chr9 9382538 9383294 -108479333 - L1PA5 LINE L1 -23 6131 5378 663 329 28 9 chr9 9383297 9383513 -108479114 - MIR SINE MIR -37 225 6 330 321 62 53 chr9 9383585 9383828 -108478799 + L1ME LINE L1 5104 5348 -798 497 281 84 38 chr9 9383888 9384208 -108478419 + L1ME LINE L1 5383 5717 -453 346 19 0 38 chr9 9385651 9385704 -108476923 + (CAAAA)n Simple_repeat Simple_repeat 5 55 0 584 303 188 0 chr9 9386134 9386342 -108476285 + MIR SINE MIR 2 248 -14 706 253 84 5 chr9 9386471 9386661 -108475966 - MIR SINE MIR 0 262 58 22 0 0 0 chr9 9386760 9386782 -108475845 + AT_rich Low_complexity Low_complexity 1 22 0 215 224 0 15 chr9 9387255 9387322 -108475305 + GA-rich Low_complexity Low_complexity 3 68 0 222 307 121 7 chr9 9387344 9387484 -108475143 - MIR SINE MIR -10 252 97 5154 156 20 3 chr9 9387922 9389096 -108473531 - L1PA16 LINE L1 -105 6061 4868 861 86 0 0 chr9 9389160 9389277 -108473350 - L1PA8 LINE L1 0 6172 6056 2253 113 0 0 chr9 9389577 9389877 -108472750 + AluSq SINE Alu 1 300 -13 243 258 32 0 chr9 9390084 9390146 -108472481 - MIR SINE MIR -48 160 96 210 118 0 0 chr9 9390550 9390584 -108472043 + (TA)n Simple_repeat Simple_repeat 2 35 0 240 211 184 28 chr9 9390585 9390694 -108471933 - L1ME4a LINE L1 -196 5925 5800 195 306 65 0 chr9 9391019 9391081 -108471546 + L2 LINE L2 3246 3311 -2 237 367 176 27 chr9 9391649 9392241 -108470386 + L2 LINE L2 2225 2904 -410 216 351 0 14 chr9 9393130 9393204 -108469423 + L2 LINE L2 3236 3308 -5 234 270 79 0 chr9 9393252 9393315 -108469312 - MER91A DNA MER1_type -19 177 110 4299 199 38 27 chr9 9394066 9395270 -108467357 + L1MA9 LINE L1 5057 6274 -38 211 163 20 41 chr9 9396466 9396515 -108466112 + MIR SINE MIR 158 205 -57 207 286 0 0 chr9 9397304 9397367 -108465260 + A-rich Low_complexity Low_complexity 1 63 0 1459 164 52 31 chr9 9398287 9398573 -108464054 - AluJo SINE Alu -20 292 1 200 325 75 0 chr9 9398592 9398672 -108463955 - MIR SINE MIR -73 189 104 23 78 0 0 chr9 9398944 9398995 -108463632 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr9 9399190 9399214 -108463413 + AT_rich Low_complexity Low_complexity 1 24 0 337 313 121 16 chr9 9401065 9401321 -108461306 - L1ME4a LINE L1 -1 6120 5838 252 262 141 53 chr9 9401385 9401591 -108461036 - L1ME4a LINE L1 -386 5735 5512 21 0 0 0 chr9 9401930 9401951 -108460676 + AT_rich Low_complexity Low_complexity 1 21 0 208 306 0 40 chr9 9402705 9402829 -108459798 + GA-rich Low_complexity Low_complexity 2 120 0 3043 140 30 4 chr9 9403838 9404380 -108458247 - L1MA4 LINE L1 -1 6299 5744 3457 144 33 33 chr9 9405237 9405696 -108456931 + MER39 LTR ERV1 75 536 -171 2101 125 0 13 chr9 9405696 9406001 -108456626 + AluSx SINE Alu 1 301 -11 3457 144 33 33 chr9 9406001 9406174 -108456453 + MER39 LTR ERV1 535 707 0 447 308 96 0 chr9 9407960 9408116 -108454511 + MIR SINE MIR 36 206 -56 21 36 0 0 chr9 9409864 9409892 -108452735 + AT_rich Low_complexity Low_complexity 1 28 0 534 215 55 6 chr9 9409959 9410122 -108452505 + L1MC5 LINE L1 7610 7780 -181 2435 223 18 38 chr9 9410737 9411277 -108451350 + L1ME1 LINE L1 5508 6034 -132 1750 175 42 28 chr9 9411277 9411637 -108450990 - MLT1A1 LTR MaLR 0 365 1 2435 223 18 38 chr9 9411637 9411763 -108450864 + L1ME1 LINE L1 6034 6161 -5 317 314 29 9 chr9 9411862 9411967 -108450660 - L1ME LINE L1 -305 5816 5710 14914 130 14 15 chr9 9411979 9414399 -108448228 + Tigger1 DNA MER2_type 1 2417 -1 245 306 117 9 chr9 9415909 9416020 -108446607 - L2 LINE L2 0 3313 3191 304 301 24 57 chr9 9416086 9416209 -108446418 - MIR SINE MIR -108 154 36 359 279 39 3 chr9 9417660 9417794 -108444833 - MER63 DNA MER1_type 0 1061 692 29 47 0 0 chr9 9419057 9419100 -108443527 + AT_rich Low_complexity Low_complexity 1 43 0 254 368 26 13 chr9 9420024 9420179 -108442448 + MIR SINE MIR 106 262 0 26 50 0 0 chr9 9420764 9420804 -108441823 + AT_rich Low_complexity Low_complexity 1 40 0 26 0 0 0 chr9 9421830 9421856 -108440771 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr9 9422222 9422248 -108440379 + AT_rich Low_complexity Low_complexity 1 26 0 356 266 156 41 chr9 9422344 9422562 -108440065 - HAL1 LINE L1 -577 1930 1688 21 0 0 0 chr9 9422581 9422602 -108440025 + AT_rich Low_complexity Low_complexity 1 21 0 870 39 0 0 chr9 9422691 9422795 -108439832 - L1PA3 LINE L1 -3 6152 6049 2251 64 7 0 chr9 9422971 9423303 -108439324 - AluY SINE Alu 0 334 1 249 33 0 0 chr9 9424183 9424213 -108438414 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 511 117 0 0 chr9 9424213 9424290 -108438337 - L1PA10 LINE L1 -21 6147 6071 792 283 81 25 chr9 9425148 9425594 -108437033 + LTR33 LTR ERVL 33 519 -2 24 53 0 0 chr9 9425721 9425759 -108436868 + AT_rich Low_complexity Low_complexity 1 38 0 2117 228 77 37 chr9 9426605 9427140 -108435487 + MLT1E LTR MaLR 1 556 -37 195 69 0 0 chr9 9428956 9428985 -108433642 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 264 299 0 0 chr9 9429701 9429768 -108432859 + (TG)n Simple_repeat Simple_repeat 2 68 0 4216 79 2 7 chr9 9429923 9430480 -108432147 + MER41A LTR ERV1 1 554 0 376 314 106 5 chr9 9431076 9431283 -108431344 + MIR SINE MIR 2 229 -33 196 302 116 0 chr9 9431634 9431736 -108430891 - MIR SINE MIR -63 145 25 874 9 27 0 chr9 9434033 9434143 -108428484 + (GAAA)n Simple_repeat Simple_repeat 3 115 0 1983 139 0 3 chr9 9434203 9434490 -108428137 + AluSx SINE Alu 1 286 -26 24 0 0 0 chr9 9434510 9434534 -108428093 + AT_rich Low_complexity Low_complexity 1 24 0 602 245 20 37 chr9 9434744 9435012 -108427615 + L1MA10 LINE L1 5916 6333 -1 1010 305 102 4 chr9 9435100 9435552 -108427075 - L2 LINE L2 -601 2713 2218 292 354 49 18 chr9 9435553 9435717 -108426910 - L2 LINE L2 -2518 796 628 5846 153 42 52 chr9 9435980 9436699 -108425928 + Tigger3b DNA MER2_type 1 703 -2325 1763 69 0 0 chr9 9436699 9436932 -108425695 + L1PA8 LINE L1 5938 6170 -2 5846 153 42 52 chr9 9436932 9437456 -108425171 + Tigger3b DNA MER2_type 703 1231 0 226 294 46 28 chr9 9437837 9437946 -108424681 + MIR SINE MIR 123 233 -29 1398 175 33 17 chr9 9438322 9438636 -108423991 - L1PA16 LINE L1 -9 6165 5813 796 275 93 55 chr9 9438768 9439590 -108423037 - L1ME4a LINE L1 -3 6118 5256 637 310 94 53 chr9 9440653 9441169 -108421458 - L2 LINE L2 0 3313 2784 216 290 32 16 chr9 9443382 9443444 -108419183 - L2 LINE L2 -10 3262 3200 1188 141 101 52 chr9 9443736 9444042 -108418585 + MER33 DNA MER1_type 1 321 -3 22 0 0 0 chr9 9444274 9444296 -108418331 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr9 9445055 9445087 -108417540 + (T)n Simple_repeat Simple_repeat 1 32 0 226 299 15 0 chr9 9445991 9446058 -108416569 + L2 LINE L2 3242 3309 -4 1548 146 32 0 chr9 9446063 9446310 -108416317 - Tigger3(Golem) DNA MER2_type -2 3027 2773 559 250 25 0 chr9 9446311 9446431 -108416196 - Tigger3(Golem) DNA MER2_type -2889 140 18 194 229 71 0 chr9 9446610 9446680 -108415947 - L2 LINE L2 -227 3045 2971 338 280 80 40 chr9 9447484 9447634 -108414993 + MIR SINE MIR 51 206 -56 377 316 52 11 chr9 9448027 9448201 -108414426 - MIR3 SINE MIR -6 202 22 246 235 15 15 chr9 9448440 9448508 -108414119 + CT-rich Low_complexity Low_complexity 2 69 0 401 273 12 23 chr9 9449098 9449255 -108413372 + MIR SINE MIR 39 191 -71 597 235 166 18 chr9 9449418 9449635 -108412992 + MIR SINE MIR 12 260 -2 268 276 15 104 chr9 9449829 9449963 -108412664 + L2 LINE L2 3150 3271 -1 2925 203 23 38 chr9 9449982 9450672 -108411955 + MER67C LTR ERV1 1 680 -30 22 0 0 0 chr9 9450985 9451007 -108411620 + AT_rich Low_complexity Low_complexity 1 22 0 1175 165 21 25 chr9 9451183 9451425 -108411202 + L1MC3 LINE L1 7480 7720 -65 489 270 17 0 chr9 9451964 9452079 -108410548 - MIR3 SINE MIR -9 199 83 278 321 98 9 chr9 9452660 9452772 -108409855 + MIR SINE MIR 24 145 -63 25 0 0 0 chr9 9452802 9452827 -108409800 + AT_rich Low_complexity Low_complexity 1 25 0 2180 106 3 7 chr9 9453336 9453637 -108408990 - AluSq SINE Alu -12 301 2 26 0 0 0 chr9 9453644 9453670 -108408957 + AT_rich Low_complexity Low_complexity 1 26 0 902 197 45 40 chr9 9454230 9454453 -108408174 + MER58A DNA MER1_type 1 224 0 192 263 0 0 chr9 9454790 9454828 -108407799 - MIR SINE MIR -115 147 110 312 248 179 81 chr9 9454835 9455069 -108407558 - MIR SINE MIR 0 262 6 23 33 0 0 chr9 9455936 9455966 -108406661 + AT_rich Low_complexity Low_complexity 1 30 0 2668 88 0 0 chr9 9455988 9456350 -108406277 - L1PA13 LINE L1 -2 6161 5800 242 319 219 12 chr9 9456474 9456634 -108405993 - MIR3 SINE MIR -11 197 5 554 314 83 62 chr9 9456770 9457314 -108405313 - MLT1K LTR MaLR -29 559 5 219 69 0 0 chr9 9457378 9457407 -108405220 + (T)n Simple_repeat Simple_repeat 1 29 0 477 291 168 79 chr9 9457523 9457929 -108404698 + LTR67 LTR ERVL 101 542 -15 952 155 0 0 chr9 9458394 9458756 -108403871 + AluSx SINE Alu 1 362 0 540 272 17 29 chr9 9461387 9461560 -108401067 - MER58B DNA MER1_type -1 340 170 6470 135 61 9 chr9 9461560 9463731 -108398896 + L1MA2 LINE L1 4014 6304 0 245 189 0 0 chr9 9464052 9464089 -108398538 - MER105 DNA DNA -162 42 6 258 310 37 53 chr9 9464775 9464967 -108397660 + MIR SINE MIR 27 212 -50 1122 252 94 3 chr9 9465253 9465539 -108397088 + Tigger7 DNA MER2_type 1 312 -2175 * 1253 148 5 0 chr9 9465528 9465737 -108396890 + Tigger7 DNA MER2_type 2265 2474 -13 22 35 0 0 chr9 9465926 9465955 -108396672 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr9 9465990 9466024 -108396603 + AT_rich Low_complexity Low_complexity 1 34 0 1871 170 19 32 chr9 9466743 9467113 -108395514 - MLT1A1 LTR MaLR 0 365 1 222 368 0 0 chr9 9467971 9468047 -108394580 + MIR SINE MIR 1 76 -186 243 103 0 0 chr9 9468155 9468194 -108394433 + (ATG)n Simple_repeat Simple_repeat 1 39 0 629 205 21 52 chr9 9468304 9468477 -108394150 + MLT1C LTR MaLR 311 467 0 392 291 7 61 chr9 9468869 9469017 -108393610 - MIR SINE MIR -31 231 92 243 355 40 24 chr9 9469452 9469576 -108393051 - L2 LINE L2 -1 3271 3146 452 301 63 10 chr9 9469786 9469992 -108392635 + L1ME LINE L1 5505 5724 -446 858 191 65 0 chr9 9470005 9470204 -108392423 + L1MA8 LINE L1 6075 6286 -5 442 273 9 0 chr9 9470213 9470323 -108392304 - MLT2D LTR ERVL -303 111 1 245 213 73 6 chr9 9470488 9470652 -108391975 + (TA)n Simple_repeat Simple_repeat 2 176 0 22 35 0 0 chr9 9471564 9471593 -108391034 + AT_rich Low_complexity Low_complexity 1 29 0 274 267 0 0 chr9 9472078 9472138 -108390489 - MIR3 SINE MIR -7 201 142 2595 23 7 3 chr9 9473219 9473529 -108389098 - AluY SINE Alu 0 311 1 22 35 0 0 chr9 9474440 9474469 -108388158 + AT_rich Low_complexity Low_complexity 1 29 0 1038 273 122 35 chr9 9474491 9475490 -108387137 + L1ME3A LINE L1 4272 5357 -789 764 263 72 65 chr9 9475616 9476034 -108386593 + L1ME3A LINE L1 5743 6163 -7 339 136 23 11 chr9 9477299 9477387 -108385240 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 434 345 20 35 chr9 9477865 9478068 -108384559 + MIR3 SINE MIR 9 208 0 305 303 22 11 chr9 9478349 9478438 -108384189 + L2 LINE L2 3219 3308 -5 997 293 83 34 chr9 9479801 9480482 -108382145 - L2 LINE L2 -4 3309 2577 305 340 25 31 chr9 9480631 9480793 -108381834 + MIR SINE MIR 102 262 0 663 307 45 22 chr9 9480837 9481238 -108381389 - L1M4 LINE L1 -2383 3763 3354 1098 249 78 80 chr9 9481244 9481718 -108380909 + MLT1D LTR MaLR 3 475 -30 1750 129 52 4 chr9 9481737 9482041 -108380586 + AluSp SINE Alu 1 317 0 3314 210 28 41 chr9 9482402 9482878 -108379749 - L1MD2 LINE L1 -1 6358 5883 288 327 51 37 chr9 9482878 9483312 -108379315 - L1PA8A LINE L1 -232 5899 5460 1943 139 3 0 chr9 9483392 9483686 -108378941 - AluSc SINE Alu -14 295 1 23 0 0 0 chr9 9485375 9485398 -108377229 + AT_rich Low_complexity Low_complexity 1 23 0 975 168 5 59 chr9 9485696 9485899 -108376728 - AluJo SINE Alu -28 284 93 1566 214 64 120 chr9 9485942 9486638 -108375989 + MLT1E1 LTR MaLR 1 650 -4 378 0 0 0 chr9 9487057 9487099 -108375528 + (CA)n Simple_repeat Simple_repeat 2 43 0 308 343 7 21 chr9 9487366 9487509 -108375118 - MIR SINE MIR -12 250 110 229 273 18 0 chr9 9487965 9488020 -108374607 - L2 LINE L2 -8 3305 3250 2018 189 112 5 chr9 9488158 9488576 -108374051 + MLT2C2 LTR ERVL 2 464 0 327 237 119 25 chr9 9488711 9488829 -108373798 + MIR SINE MIR 121 249 -13 22 0 0 0 chr9 9489359 9489381 -108373246 + AT_rich Low_complexity Low_complexity 1 22 0 1085 87 6 6 chr9 9489381 9489580 -108373047 - L1M LINE L1 -743 5403 5214 1507 106 16 8 chr9 9489927 9490172 -108372455 - L1MA3 LINE L1 0 6305 6059 6765 58 84 0 chr9 9490189 9491175 -108371452 - L1PA5 LINE L1 -2 6152 5146 5231 105 8 19 chr9 9491184 9492065 -108370562 - L1MA3 LINE L1 -257 6048 5179 618 260 78 39 chr9 9493386 9493617 -108369010 - LTR16A LTR ERVL -6 444 205 463 113 72 10 chr9 9493617 9493714 -108368913 - L1MA5A LINE L1 -1 6296 6194 321 176 29 0 chr9 9493714 9493782 -108368845 - L1MA5A LINE L1 -57 6240 6171 * 2945 148 47 9 chr9 9493756 9494396 -108368231 - L1MA5A LINE L1 -46 6251 5548 243 298 80 16 chr9 9494955 9495087 -108367540 - MIR SINE MIR -61 147 2 539 258 91 45 chr9 9495210 9495431 -108367196 - MIR SINE MIR -27 235 5 8082 99 3 6 chr9 9495512 9496707 -108365920 - L1PA7 LINE L1 -2718 3428 2237 3782 109 16 0 chr9 9496708 9497277 -108365350 + L1PA7 LINE L1 3444 4021 -2125 9206 96 4 3 chr9 9497278 9499355 -108363272 + L1PA7 LINE L1 4075 6153 -1 22 0 0 0 chr9 9502124 9502146 -108360481 + AT_rich Low_complexity Low_complexity 1 22 0 223 315 77 31 chr9 9502397 9502527 -108360100 - MIR SINE MIR -41 221 86 2208 121 16 0 chr9 9502670 9502977 -108359650 - AluSx SINE Alu 0 312 1 2155 115 26 0 chr9 9503101 9503405 -108359222 + AluSx SINE Alu 1 312 0 648 223 141 15 chr9 9503580 9503786 -108358841 + MIR SINE MIR 28 259 -3 254 208 0 0 chr9 9504011 9504058 -108358569 - MER58A DNA MER1_type -17 207 161 475 255 57 0 chr9 9504058 9504164 -108358463 - MER58A DNA MER1_type 0 113 2 182 333 118 11 chr9 9504237 9504330 -108358297 + MIR3 SINE MIR 83 185 -23 2804 135 30 4 chr9 9504723 9505219 -108357408 - L1MA4 LINE L1 0 6300 5792 228 184 184 0 chr9 9506377 9506426 -108356201 + L2 LINE L2 3209 3266 -6 3720 252 78 36 chr9 9507591 9508974 -108353653 + L1MEc LINE L1 2197 3521 -2694 3012 112 18 22 chr9 9508974 9509476 -108353151 + L1PB2 LINE L1 5651 6150 -1 3720 252 78 36 chr9 9509476 9509539 -108353088 + L1MEc LINE L1 3521 3580 -2635 191 35 0 35 chr9 9509539 9509568 -108353059 + (CAA)n Simple_repeat Simple_repeat 2 29 0 3720 252 78 36 chr9 9509568 9510227 -108352400 + L1MEc LINE L1 3580 4402 -1813 477 198 23 0 chr9 9510335 9510421 -108352206 - AluJ/FLAM SINE Alu -222 90 3 2972 206 61 8 chr9 9510437 9511144 -108351483 + L1MA9 LINE L1 5531 6274 -38 310 247 0 0 chr9 9511388 9511465 -108351162 - L1MC4 LINE L1 -4 8038 7962 470 278 22 28 chr9 9511798 9511978 -108350649 + Charlie8 DNA MER1_type 74 252 -2165 2181 86 0 7 chr9 9512198 9512478 -108350149 - AluY SINE Alu -6 305 28 1061 200 48 0 chr9 9512525 9512755 -108349872 + LTR40a LTR ERVL 1 241 -278 38 51 0 0 chr9 9512821 9512880 -108349747 + AT_rich Low_complexity Low_complexity 1 59 0 201 194 0 56 chr9 9513056 9513087 -108349540 + T-rich Low_complexity Low_complexity 5 36 -36 1773 136 31 0 chr9 9513087 9513344 -108349283 - AluSx SINE Alu -47 265 1 201 194 0 56 chr9 9513344 9513384 -108349243 + T-rich Low_complexity Low_complexity 36 72 0 294 354 69 33 chr9 9513488 9513850 -108348777 + L1ME3A LINE L1 5515 5889 -275 180 68 45 23 chr9 9515957 9516001 -108346626 + A-rich Low_complexity Low_complexity 1 45 0 202 98 24 49 chr9 9517611 9517652 -108344975 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1778 165 0 13 chr9 9518490 9518799 -108343828 + AluJb SINE Alu 1 305 -7 1210 221 67 45 chr9 9518890 9519221 -108343406 - MER58B DNA MER1_type -3 338 1 296 389 32 11 chr9 9519899 9520084 -108342543 - MIR3 SINE MIR -13 195 7 22 35 0 0 chr9 9521079 9521108 -108341519 + AT_rich Low_complexity Low_complexity 1 29 0 312 306 191 25 chr9 9521109 9521308 -108341319 - MIR SINE MIR 0 262 31 207 0 0 0 chr9 9521404 9521427 -108341200 + (A)n Simple_repeat Simple_repeat 1 23 0 505 279 39 111 chr9 9523175 9523534 -108339093 - MLT1I LTR MaLR 0 409 77 325 328 102 16 chr9 9524130 9524316 -108338311 + MIR SINE MIR 13 214 -48 930 180 51 6 chr9 9525064 9525242 -108337385 + MER5A DNA MER1_type 1 186 -3 310 373 108 52 chr9 9525532 9525570 -108337057 - L2 LINE L2 -24 3248 3214 811 232 45 58 chr9 9525570 9525794 -108336833 + MER58A DNA MER1_type 4 224 0 310 373 108 52 chr9 9525794 9526042 -108336585 - L2 LINE L2 -58 3214 2946 1690 178 3 35 chr9 9527752 9528066 -108334561 - AluJo SINE Alu -8 304 1 3538 154 27 109 chr9 9530108 9531004 -108331623 + L1PB3 LINE L1 5330 6151 -3 2463 109 8 31 chr9 9531024 9531409 -108331218 + L1PB3 LINE L1 5770 6145 -9 247 291 76 0 chr9 9531682 9531761 -108330866 + L2 LINE L2 3227 3311 -2 508 247 16 70 chr9 9532686 9532872 -108329755 - MER69A DNA AcHobo -1 176 1 2021 104 35 3 chr9 9534328 9534615 -108328012 - AluSx SINE Alu -16 296 1 400 198 31 0 chr9 9534680 9534776 -108327851 + L1MA4A LINE L1 6182 6280 -23 347 183 0 118 chr9 9534919 9535012 -108327615 - MER103 DNA DNA -36 130 49 371 335 59 18 chr9 9535397 9535567 -108327060 - MER5B DNA MER1_type -1 177 1 478 319 12 0 chr9 9535694 9535854 -108326773 - MIR SINE MIR -2 260 99 3671 129 13 13 chr9 9536018 9536621 -108326006 + L1PB1 LINE L1 5546 6148 -3 192 40 0 0 chr9 9537795 9537820 -108324807 + (TTG)n Simple_repeat Simple_repeat 2 26 0 365 318 82 29 chr9 9540250 9540420 -108322207 + L2 LINE L2 3088 3266 -6 715 343 73 27 chr9 9540468 9541075 -108321552 - L2 LINE L2 -8 3264 2628 3827 178 36 99 chr9 9541175 9541774 -108320853 - MER6 DNA MER2_type 0 865 343 255 103 0 0 chr9 9541774 9541813 -108320814 + (CA)n Simple_repeat Simple_repeat 1 39 0 3827 178 36 99 chr9 9541813 9542136 -108320491 - MER6 DNA MER2_type -522 343 1 329 325 124 47 chr9 9542161 9542588 -108320039 - L2 LINE L2 -708 2606 2147 21 0 0 0 chr9 9542977 9542998 -108319629 + AT_rich Low_complexity Low_complexity 1 21 0 220 306 0 0 chr9 9543098 9543160 -108319467 + (CA)n Simple_repeat Simple_repeat 2 63 0 2089 93 18 0 chr9 9543899 9544198 -108318429 + AluSq SINE Alu 1 304 0 577 256 231 0 chr9 9544629 9544824 -108317803 + MIR SINE MIR 6 245 -17 2244 70 0 7 chr9 9546789 9547100 -108315527 - AluY SINE Alu 0 309 1 677 255 292 11 chr9 9548731 9548847 -108313780 + L2 LINE L2 2319 2401 -913 2831 16 0 3 chr9 9548847 9549161 -108313466 - AluYb8 SINE Alu -2 316 4 677 255 292 11 chr9 9549161 9549424 -108313203 + L2 LINE L2 2401 2805 -509 446 245 8 97 chr9 9549438 9549675 -108312952 + L2 LINE L2 3077 3292 -21 229 296 0 0 chr9 9550775 9550829 -108311798 + (CATA)n Simple_repeat Simple_repeat 3 56 0 23 54 0 0 chr9 9552011 9552048 -108310579 + AT_rich Low_complexity Low_complexity 1 37 0 182 375 48 10 chr9 9552195 9552299 -108310328 + MIR3 SINE MIR 69 176 -32 227 327 39 10 chr9 9552752 9552856 -108309771 - MIR SINE MIR -62 146 40 250 206 135 92 chr9 9553039 9553180 -108309447 + MIR SINE MIR 116 262 0 1109 141 0 47 chr9 9553901 9554000 -108308627 - Tigger7 DNA MER2_type -7 2480 2393 1022 178 25 5 chr9 9554000 9554202 -108308425 + MER6B DNA MER2_type 2 207 -3 1109 141 0 47 chr9 9554202 9554294 -108308333 - Tigger7 DNA MER2_type -94 2393 2298 * 1544 192 49 13 chr9 9554290 9554597 -108308030 - Tigger7 DNA MER2_type -2169 318 1 258 105 0 0 chr9 9554983 9555021 -108307606 + (A)n Simple_repeat Simple_repeat 1 38 0 2563 44 0 0 chr9 9555373 9555669 -108306958 - AluY SINE Alu -15 296 1 403 278 85 40 chr9 9555698 9555874 -108306753 + MLT1J1 LTR MaLR 36 219 -227 245 225 0 56 chr9 9555885 9556045 -108306582 + CT-rich Low_complexity Low_complexity 2 152 0 342 310 83 7 chr9 9556075 9556220 -108306407 + MLT1J2 LTR MaLR 290 445 -5 350 186 40 16 chr9 9556468 9556592 -108306035 + (TA)n Simple_repeat Simple_repeat 2 128 0 336 312 188 10 chr9 9557577 9557992 -108304635 + LTR33 LTR ERVL 1 517 -4 317 341 115 1 chr9 9558000 9558174 -108304453 - MIR3 SINE MIR -63 145 3 2064 133 7 3 chr9 9559263 9559572 -108303055 + AluSg SINE Alu 1 310 0 24 32 0 0 chr9 9561036 9561067 -108301560 + AT_rich Low_complexity Low_complexity 1 31 0 480 315 33 5 chr9 9561106 9561290 -108301337 + MER5A DNA MER1_type 1 189 0 208 238 63 48 chr9 9561373 9561436 -108301191 - MIR3 SINE MIR -18 190 127 32 26 0 0 chr9 9562144 9562183 -108300444 + AT_rich Low_complexity Low_complexity 1 39 0 1393 162 59 15 chr9 9562275 9562546 -108300081 + MER58B DNA MER1_type 56 338 -3 525 218 40 114 chr9 9562576 9562778 -108299849 + MER5A DNA MER1_type 2 188 -1 21 0 0 0 chr9 9563432 9563453 -108299174 + AT_rich Low_complexity Low_complexity 1 21 0 655 307 49 25 chr9 9563862 9564106 -108298521 + MIR SINE MIR 13 262 0 318 264 81 40 chr9 9565080 9565228 -108297399 - L2 LINE L2 -8 3305 3152 200 33 0 33 chr9 9565261 9565291 -108297336 + (TA)n Simple_repeat Simple_repeat 2 30 0 1705 133 66 0 chr9 9565291 9565562 -108297065 - AluSx SINE Alu -23 289 1 367 266 98 90 chr9 9568711 9569060 -108293567 + MLT1I LTR MaLR 19 373 -36 952 245 80 52 chr9 9569060 9569423 -108293204 - MLT1A2 LTR MaLR -1 373 1 367 266 98 90 chr9 9569423 9569461 -108293166 + MLT1I LTR MaLR 373 409 0 43 47 0 0 chr9 9571212 9571276 -108291351 + AT_rich Low_complexity Low_complexity 1 64 0 10305 177 27 30 chr9 9571882 9572497 -108290130 + L1MA7 LINE L1 2949 3565 -2726 3963 97 30 15 chr9 9572497 9573098 -108289529 - L1PA11 LINE L1 0 6174 5565 10305 177 27 30 chr9 9573098 9573123 -108289504 + L1MA7 LINE L1 3565 3589 -2702 2106 94 0 0 chr9 9573123 9573415 -108289212 + AluSg SINE Alu 14 305 0 10305 177 27 30 chr9 9573415 9576124 -108286503 + L1MA7 LINE L1 3589 6289 -2 25 31 0 0 chr9 9576301 9576333 -108286294 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 9576647 9576668 -108285959 + AT_rich Low_complexity Low_complexity 1 21 0 1439 346 95 39 chr9 9576981 9578757 -108283870 + L2 LINE L2 1167 3049 -223 1957 211 67 43 chr9 9578860 9579353 -108283274 - MLT1D LTR MaLR 0 505 1 308 287 23 0 chr9 9579393 9579480 -108283147 + L2 LINE L2 3225 3313 0 2101 109 7 13 chr9 9579522 9579642 -108282985 + AluSx SINE Alu 1 120 -192 342 0 0 0 chr9 9579642 9579680 -108282947 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2101 109 7 13 chr9 9579680 9579861 -108282766 + AluSx SINE Alu 120 300 -12 261 376 105 0 chr9 9579895 9580028 -108282599 - L2 LINE L2 -4 3268 3122 310 349 11 0 chr9 9581831 9581942 -108280685 - MIR SINE MIR -78 130 14 288 0 0 0 chr9 9582119 9582151 -108280476 + (TG)n Simple_repeat Simple_repeat 1 32 0 2184 133 0 0 chr9 9582263 9582572 -108280055 + AluSp SINE Alu 1 309 -4 930 227 72 0 chr9 9582831 9583038 -108279589 + MER58A DNA MER1_type 2 223 -1 23 0 0 0 chr9 9583193 9583216 -108279411 + AT_rich Low_complexity Low_complexity 1 23 0 36 0 0 0 chr9 9583659 9583695 -108278932 + AT_rich Low_complexity Low_complexity 1 36 0 36 40 0 0 chr9 9586115 9586165 -108276462 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr9 9586505 9586536 -108276091 + AT_rich Low_complexity Low_complexity 1 31 0 194 343 0 29 chr9 9586975 9587045 -108275582 + L2 LINE L2 3246 3313 0 851 275 115 50 chr9 9587471 9588021 -108274606 + L2 LINE L2 2457 3039 -274 1802 154 11 76 chr9 9588189 9588558 -108274069 - MER7A DNA MER2_type -2 344 2 195 167 146 0 chr9 9588646 9588694 -108273933 + L2 LINE L2 3180 3234 -38 363 301 89 14 chr9 9588964 9589110 -108273517 + L2 LINE L2 3152 3308 -5 27 29 0 0 chr9 9589549 9589583 -108273044 + AT_rich Low_complexity Low_complexity 1 34 0 1768 201 22 3 chr9 9589633 9589991 -108272636 + MLT1A1 LTR MaLR 1 365 0 2373 97 0 7 chr9 9590131 9590441 -108272186 + AluSg SINE Alu 1 308 -2 1779 203 39 21 chr9 9591307 9591696 -108270931 + MSTD LTR MaLR 1 396 0 2179 124 18 47 chr9 9591801 9592187 -108270440 - THE1C LTR MaLR 0 375 1 515 284 88 42 chr9 9592642 9592881 -108269746 + L3 LINE CR1 998 1247 -330 202 265 0 0 chr9 9592887 9592936 -108269691 + L3 LINE CR1 1363 1411 -166 354 202 18 18 chr9 9593078 9593187 -108269440 + CT-rich Low_complexity Low_complexity 4 112 0 291 321 80 15 chr9 9593225 9593362 -108269265 + MIR3 SINE MIR 52 197 -11 189 315 117 63 chr9 9594346 9594457 -108268170 - L2 LINE L2 -3 3269 3153 407 254 238 22 chr9 9594571 9594756 -108267871 + MIR SINE MIR 28 252 -10 4467 38 0 0 chr9 9594864 9595398 -108267229 + L1PA4 LINE L1 5619 6152 -3 244 333 14 0 chr9 9595578 9595650 -108266977 + L3 LINE CR1 411 483 -1094 227 319 138 26 chr9 9595805 9595921 -108266706 + MIR3 SINE MIR 11 139 -69 201 129 0 0 chr9 9595961 9595992 -108266635 + MIR SINE MIR 220 250 -12 21 36 0 0 chr9 9596260 9596288 -108266339 + AT_rich Low_complexity Low_complexity 1 28 0 527 289 96 23 chr9 9596293 9596511 -108266116 - MIR SINE MIR -4 258 25 210 314 0 0 chr9 9598120 9598171 -108264456 - L2 LINE L2 -85 3187 3137 203 272 111 12 chr9 9598195 9598276 -108264351 - MIR SINE MIR -74 188 100 378 200 156 0 chr9 9599035 9599125 -108263502 + MLT1J2 LTR MaLR 1 104 -346 280 250 39 86 chr9 9599319 9599447 -108263180 + MLT1J2 LTR MaLR 311 432 -18 199 359 10 78 chr9 9599464 9599567 -108263060 + L2 LINE L2 3141 3236 -36 1026 213 0 5 chr9 9601204 9601392 -108261235 + AluJb SINE Alu 87 273 -39 498 46 0 0 chr9 9601392 9601457 -108261170 + (TC)n Simple_repeat Simple_repeat 1 65 0 26 0 0 0 chr9 9601778 9601804 -108260823 + AT_rich Low_complexity Low_complexity 1 26 0 204 200 0 0 chr9 9602364 9602409 -108260218 + CT-rich Low_complexity Low_complexity 1 45 0 186 103 0 0 chr9 9602598 9602627 -108260000 + (TG)n Simple_repeat Simple_repeat 2 30 0 1012 233 90 23 chr9 9602728 9603316 -108259311 - L1ME3A LINE L1 -20 6150 5490 329 0 24 0 chr9 9603599 9603640 -108258987 + (TG)n Simple_repeat Simple_repeat 1 42 0 476 335 44 0 chr9 9604022 9604180 -108258447 - MIR3 SINE MIR -7 201 37 403 383 47 34 chr9 9604234 9604532 -108258095 + L2 LINE L2 2970 3271 -1 558 258 140 6 chr9 9604618 9604796 -108257831 + MLT1I LTR MaLR 17 218 -191 1780 216 39 23 chr9 9604847 9605036 -108257591 + MSTD LTR MaLR 2 187 -209 2173 70 138 0 chr9 9605036 9605348 -108257279 + THE1A LTR MaLR 1 355 0 1780 216 39 23 chr9 9605348 9605547 -108257080 + MSTD LTR MaLR 187 396 0 384 306 37 0 chr9 9605548 9605656 -108256971 + MLT1I LTR MaLR 295 406 -3 225 213 16 0 chr9 9605657 9605718 -108256909 + MST-int LTR MaLR 1560 1621 -30 1284 231 61 112 chr9 9605745 9606343 -108256284 + MLT1F1 LTR MaLR 1 567 0 23 0 0 0 chr9 9606545 9606568 -108256059 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 9607937 9607963 -108254664 + AT_rich Low_complexity Low_complexity 1 26 0 7355 129 31 2 chr9 9608202 9609399 -108253228 - Tigger3b DNA MER2_type 0 1231 1 227 162 0 73 chr9 9609790 9609858 -108252769 + L1MC4 LINE L1 6641 6703 -1339 * 266 228 127 0 chr9 9609826 9609905 -108252722 + L1MC4 LINE L1 6614 6702 -1340 222 316 122 10 chr9 9610833 9610931 -108251696 + MIR SINE MIR 43 151 -57 503 350 9 27 chr9 9611297 9611520 -108251107 + MIR SINE MIR 31 249 -13 2590 207 42 10 chr9 9611578 9612173 -108250454 + MER90 LTR ERV1 1 614 0 2163 108 0 0 chr9 9612215 9612501 -108250126 - AluSx SINE Alu -26 286 1 180 200 0 0 chr9 9612576 9612611 -108250016 + L2 LINE L2 3238 3272 0 25 51 0 0 chr9 9614574 9614613 -108248014 + AT_rich Low_complexity Low_complexity 1 39 0 252 311 152 8 chr9 9614658 9614790 -108247837 + MIR SINE MIR 28 178 -84 243 307 84 58 chr9 9614916 9615141 -108247486 + MLT1K LTR MaLR 336 566 -22 326 270 165 23 chr9 9615239 9615414 -108247213 - MIR3 SINE MIR -11 251 26 836 122 0 0 chr9 9617904 9618019 -108244608 + AluSp/q SINE Alu 167 281 -32 264 30 0 0 chr9 9618021 9618054 -108244573 + (CA)n Simple_repeat Simple_repeat 2 34 0 719 294 54 67 chr9 9620534 9621223 -108241404 - L2 LINE L2 0 3313 2624 2023 157 45 42 chr9 9621225 9621766 -108240861 + MLT2A2 LTR ERVL 1 554 0 1132 310 27 10 chr9 9621766 9622179 -108240448 - L2 LINE L2 -688 2626 2207 1545 279 12 34 chr9 9622291 9622785 -108239842 + L1MC5 LINE L1 5453 5935 -1873 2325 69 16 0 chr9 9622826 9623132 -108239495 - AluY SINE Alu 0 311 1 1635 240 97 68 chr9 9623396 9623628 -108238999 + L1MC5 LINE L1 7008 7232 -729 2331 77 0 3 chr9 9623628 9623926 -108238701 - AluY SINE Alu -14 297 1 1635 240 97 68 chr9 9623926 9624572 -108238055 + L1MC5 LINE L1 7232 7911 -50 21 0 0 0 chr9 9624578 9624599 -108238028 + AT_rich Low_complexity Low_complexity 1 21 0 1984 225 89 7 chr9 9624602 9625060 -108237567 - LTR40a LTR ERVL -18 501 6 21 0 0 0 chr9 9625262 9625283 -108237344 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 9625749 9625770 -108236857 + AT_rich Low_complexity Low_complexity 1 21 0 228 86 0 0 chr9 9625890 9625925 -108236702 + (TG)n Simple_repeat Simple_repeat 2 36 0 631 344 27 19 chr9 9626018 9626274 -108236353 + MIR SINE MIR 4 261 -1 255 61 0 0 chr9 9626282 9626315 -108236312 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 411 21 0 0 chr9 9626330 9626378 -108236249 + (CA)n Simple_repeat Simple_repeat 1 48 0 530 302 15 42 chr9 9626515 9626783 -108235844 - MIR SINE MIR 0 262 3 14134 83 3 2 chr9 9677001 9679744 -108182883 + L1PA7 LINE L1 3415 6152 -2 27434 64 4 12 chr9 9680536 9685049 -108177578 + L1PA6 LINE L1 1675 6148 -6 302 257 29 0 chr9 9685070 9685140 -108177487 - SATR1 Satellite Satellite -387 83 12 8788 41 0 0 chr9 9685243 9687125 -108175502 + L1PA3 LINE L1 4283 6152 -3 35399 44 1 4 chr9 9688074 9692429 -108170198 - L1P LINE L1 -1802 4344 2 1168 279 97 3 chr9 9692605 9692988 -108169639 + L2 LINE L2 2016 2434 -880 14569 126 14 5 chr9 9693183 9695572 -108167055 + L1P LINE L1 952 3360 -2786 2169 164 38 75 chr9 9695674 9696141 -108166486 - L1MC3 LINE L1 -709 7076 6630 3216 191 99 6 chr9 9696141 9696810 -108165817 - MER44D DNA MER2_type -2 603 1 2169 164 38 75 chr9 9696810 9696891 -108165736 - L1MC3 LINE L1 -1155 6630 6548 1087 235 45 79 chr9 9696918 9697322 -108165305 + MLT1B LTR MaLR 1 390 0 21 71 0 0 chr9 9697348 9697390 -108165237 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr9 9697534 9697562 -108165065 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 9700085 9700106 -108162521 + AT_rich Low_complexity Low_complexity 1 21 0 374 223 96 0 chr9 9700360 9700454 -108162173 - MIR SINE MIR -28 234 132 210 281 35 0 chr9 9700489 9700546 -108162081 + L2 LINE L2 3214 3272 0 201 351 20 20 chr9 9700555 9700703 -108161924 - L2 LINE L2 -828 2486 2339 955 166 71 33 chr9 9701781 9701992 -108160635 + MER20 DNA MER1_type 1 219 0 463 348 80 26 chr9 9702591 9702930 -108159697 + L2 LINE L2 2620 2976 -338 1702 198 19 19 chr9 9702983 9703347 -108159280 + MLT1A1 LTR MaLR 2 365 0 380 324 0 9 chr9 9703469 9703580 -108159047 + L2 LINE L2 3143 3252 -20 21 0 0 0 chr9 9704887 9704908 -108157719 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr9 9705099 9705126 -108157501 + (T)n Simple_repeat Simple_repeat 1 27 0 333 264 63 38 chr9 9706420 9706579 -108156048 - HAL1 LINE L1 -14 2493 2331 482 304 101 34 chr9 9706588 9706884 -108155743 - L2 LINE L2 0 3313 2998 749 281 83 112 chr9 9706899 9707855 -108154772 - HAL1 LINE L1 -1577 930 3 242 308 54 39 chr9 9707863 9707993 -108154634 - L2 LINE L2 -4 3268 3137 1185 210 60 111 chr9 9708108 9708541 -108154086 + MLT1C LTR MaLR 53 463 -4 2285 104 3 3 chr9 9708790 9709098 -108153529 + AluSx SINE Alu 1 308 -4 424 374 33 39 chr9 9710126 9710458 -108152169 + L2 LINE L2 2647 2976 -338 2122 106 0 0 chr9 9713144 9713473 -108149154 + AluSp SINE Alu 1 329 0 188 312 119 9 chr9 9713675 9713784 -108148843 - MIR SINE MIR -81 181 61 208 316 0 61 chr9 9714657 9714755 -108147872 - MIR SINE MIR -71 191 100 4607 167 37 7 chr9 9714903 9715740 -108146887 + MER6 DNA MER2_type 1 862 -3 245 322 0 35 chr9 9717088 9717175 -108145452 + L2 LINE L2 3188 3271 -1 216 0 0 0 chr9 9718342 9718366 -108144261 + (T)n Simple_repeat Simple_repeat 1 24 0 311 335 183 33 chr9 9719778 9720237 -108142390 + L2 LINE L2 2249 2776 -538 2196 107 10 3 chr9 9720398 9720706 -108141921 + AluSp SINE Alu 1 310 -3 230 156 0 0 chr9 9720711 9720756 -108141871 + A-rich Low_complexity Low_complexity 4 48 0 21 36 0 0 chr9 9722933 9722961 -108139666 + AT_rich Low_complexity Low_complexity 1 28 0 2075 113 7 0 chr9 9723782 9724075 -108138552 + AluSp SINE Alu 1 295 -18 580 335 66 9 chr9 9724144 9724371 -108138256 + MIR SINE MIR 11 250 -12 375 339 79 21 chr9 9724794 9724983 -108137644 - MIR SINE MIR -15 247 48 21 0 0 0 chr9 9725469 9725490 -108137137 + AT_rich Low_complexity Low_complexity 1 21 0 382 297 85 18 chr9 9725845 9726010 -108136617 - MIR SINE MIR -64 198 23 12680 59 0 1 chr9 9726204 9728596 -108134031 - L1PA6 LINE L1 -4 6150 3758 262 342 0 0 chr9 9728939 9729018 -108133609 - MIR SINE MIR -113 149 71 1680 76 22 0 chr9 9730313 9730538 -108132089 + MER30 DNA MER1_type 1 230 0 1903 161 3 3 chr9 9731134 9731445 -108131182 - AluSx SINE Alu 0 312 2 228 100 0 0 chr9 9731746 9731786 -108130841 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 311 48 48 16 chr9 9735864 9735927 -108126700 + (TA)n Simple_repeat Simple_repeat 1 65 0 221 377 9 38 chr9 9735978 9736084 -108126543 + MIR3 SINE MIR 4 106 -102 415 286 96 11 chr9 9736961 9737139 -108125488 + MIR SINE MIR 63 255 -7 216 111 0 0 chr9 9737143 9737179 -108125448 + (CAT)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr9 9737957 9737988 -108124639 + AT_rich Low_complexity Low_complexity 1 31 0 195 244 22 0 chr9 9738137 9738182 -108124445 - MIR3 SINE MIR -36 172 127 29 70 0 0 chr9 9740859 9740916 -108121711 + AT_rich Low_complexity Low_complexity 1 57 0 1676 76 0 4 chr9 9741095 9741320 -108121307 - L1PA7 LINE L1 -3 6151 5928 1992 72 0 34 chr9 9741596 9741861 -108120766 + AluY SINE Alu 1 256 -55 192 328 16 0 chr9 9741952 9742013 -108120614 + L2 LINE L2 3251 3312 -1 22 0 0 0 chr9 9744192 9744214 -108118413 + AT_rich Low_complexity Low_complexity 1 22 0 1967 153 0 3 chr9 9744214 9744509 -108118118 - AluSx SINE Alu -18 294 1 6097 50 11 27 chr9 9745111 9745928 -108116699 - L1PA7 LINE L1 0 6154 5351 2436 87 3 3 chr9 9746561 9746906 -108115721 + L1PA8 LINE L1 5826 6170 -2 38 39 0 0 chr9 9747143 9747195 -108115432 + AT_rich Low_complexity Low_complexity 1 52 0 27 49 0 0 chr9 9747628 9747669 -108114958 + AT_rich Low_complexity Low_complexity 1 41 0 528 316 26 74 chr9 9748033 9748302 -108114325 + MIR SINE MIR 7 262 0 2186 117 0 0 chr9 9749094 9749393 -108113234 - AluSq SINE Alu -14 299 1 675 255 0 13 chr9 9749423 9749576 -108113051 + AluJb SINE Alu 139 289 -23 294 167 0 0 chr9 9749705 9749765 -108112862 + (TA)n Simple_repeat Simple_repeat 1 60 0 188 188 0 0 chr9 9751551 9751583 -108111044 + L2 LINE L2 2705 2736 -578 348 344 110 0 chr9 9754151 9754314 -108108313 + MIR SINE MIR 11 191 -71 510 211 0 19 chr9 9754406 9754510 -108108117 - AluJ/FLAM SINE Alu -210 102 1 357 336 66 5 chr9 9754512 9754723 -108107904 - L1MC4a LINE L1 -1906 5902 5679 390 159 0 0 chr9 9754728 9754797 -108107830 + (TG)n Simple_repeat Simple_repeat 2 70 0 346 364 19 6 chr9 9755740 9755902 -108106725 - MIR3 SINE MIR 0 208 45 1468 243 98 17 chr9 9756140 9756723 -108105904 - MLT1E3 LTR MaLR 0 624 1 928 290 120 40 chr9 9756931 9757496 -108105131 - L2 LINE L2 -38 3275 2670 430 202 67 10 chr9 9757500 9757604 -108105023 - L1MA10 LINE L1 -58 6276 6167 3244 277 46 19 chr9 9757674 9758766 -108103861 - L2 LINE L2 -638 2676 1556 321 381 39 0 chr9 9759070 9759225 -108103402 + MIR3 SINE MIR 20 180 -28 23 0 0 0 chr9 9760105 9760128 -108102499 + AT_rich Low_complexity Low_complexity 1 23 0 181 316 82 20 chr9 9762195 9762293 -108100334 - L2 LINE L2 -5 3267 3164 890 181 102 0 chr9 9763923 9764128 -108098499 - L1MA4 LINE L1 0 6300 6075 225 299 52 10 chr9 9764236 9764333 -108098294 - L2 LINE L2 -13 3300 3200 21 0 0 0 chr9 9764689 9764710 -108097917 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 9765512 9765533 -108097094 + AT_rich Low_complexity Low_complexity 1 21 0 193 261 0 0 chr9 9766203 9766249 -108096378 - MIR SINE MIR -120 142 97 1117 293 103 41 chr9 9766670 9767501 -108095126 - L2 LINE L2 -43 3270 2392 371 325 52 13 chr9 9770570 9770724 -108091903 + MIR SINE MIR 47 206 -56 28898 32 1 1 chr9 9771163 9775292 -108087335 - L1PA4 LINE L1 -3 6152 1872 242 313 90 14 chr9 9775298 9775442 -108087185 - L1ME LINE L1 -484 5637 5483 514 294 0 0 chr9 9775545 9775671 -108086956 + MIR SINE MIR 4 129 -133 1431 227 135 33 chr9 9775781 9776239 -108086388 - MLT1D LTR MaLR 0 505 1 338 315 80 0 chr9 9776243 9776405 -108086222 - L1ME LINE L1 -813 5333 5159 216 97 0 0 chr9 9777472 9777503 -108085124 + (TG)n Simple_repeat Simple_repeat 2 32 0 2055 195 64 26 chr9 9777553 9777717 -108084910 + L1MB4 LINE L1 5660 5816 -364 2215 114 3 0 chr9 9777717 9778024 -108084603 + AluSg SINE Alu 1 308 -2 2055 195 64 26 chr9 9778024 9778370 -108084257 + L1MB4 LINE L1 5816 6179 -1 368 304 185 5 chr9 9779833 9780017 -108082610 - MIR SINE MIR 0 262 46 4482 214 73 10 chr9 9780312 9781597 -108081030 - L1MC2 LINE L1 -16 6608 5126 255 39 20 39 chr9 9781597 9781648 -108080979 + (TA)n Simple_repeat Simple_repeat 2 51 0 4482 214 73 10 chr9 9781648 9782611 -108080016 - L1MC2 LINE L1 -1498 5126 4225 2528 227 19 34 chr9 9782618 9782777 -108079850 - L1MC2 LINE L1 -3145 3281 3121 775 42 0 0 chr9 9782777 9782873 -108079754 - L1MA1 LINE L1 0 6302 6207 2528 227 19 34 chr9 9782873 9783760 -108078867 - L1MC2 LINE L1 -3305 3121 2252 1741 161 38 0 chr9 9783760 9784051 -108078576 - AluJb SINE Alu -8 304 3 261 145 0 0 chr9 9784073 9784135 -108078492 + (T)n Simple_repeat Simple_repeat 1 62 0 2123 215 6 18 chr9 9784169 9784676 -108077951 - L1 LINE L1 -1389 4757 4257 * 2835 187 69 11 chr9 9784675 9785445 -108077182 + L1MB1 LINE L1 5051 5882 -307 190 301 53 35 chr9 9785610 9785723 -108076904 + L2 LINE L2 3184 3298 -15 303 336 92 34 chr9 9786097 9786389 -108076238 - MLT1I LTR MaLR -2 407 99 369 0 0 0 chr9 9786744 9786785 -108075842 + (T)n Simple_repeat Simple_repeat 1 41 0 316 362 71 14 chr9 9788110 9788320 -108074307 - MIR SINE MIR -36 226 5 318 242 0 0 chr9 9789876 9789942 -108072685 - L1M4c LINE L1 -4713 1671 1606 947 130 0 43 chr9 9790087 9790249 -108072378 - LTR1 LTR ERV1 0 785 631 1895 129 57 9 chr9 9790276 9790798 -108071829 - LTR1 LTR ERV1 -146 639 1 322 257 14 0 chr9 9790864 9790934 -108071693 + MER94 DNA DNA 64 134 0 29 0 0 0 chr9 9791094 9791123 -108071504 + AT_rich Low_complexity Low_complexity 1 29 0 669 210 28 55 chr9 9791426 9791607 -108071020 + MIR SINE MIR 86 261 -1 2108 116 20 0 chr9 9791629 9791930 -108070697 + AluSp SINE Alu 1 307 -6 581 313 103 34 chr9 9792179 9792725 -108069902 - L2 LINE L2 -1 3312 2728 25 0 0 0 chr9 9792944 9792969 -108069658 + AT_rich Low_complexity Low_complexity 1 25 0 256 261 77 69 chr9 9793146 9793276 -108069351 + MIR SINE MIR 52 182 -80 1431 189 101 1 chr9 9795286 9795594 -108067033 + MER61B LTR ERV1 1 425 0 342 247 34 0 chr9 9795967 9796056 -108066571 + MLT1H LTR MaLR 458 549 0 467 313 92 5 chr9 9796058 9796253 -108066374 + MIR SINE MIR 49 260 -2 382 336 30 0 chr9 9796691 9796822 -108065805 + L2 LINE L2 3179 3313 0 668 282 116 0 chr9 9796848 9797064 -108065563 + MIR SINE MIR 21 261 -1 191 333 40 0 chr9 9797189 9797264 -108065363 + MER5B DNA MER1_type 1 78 -100 419 219 0 0 chr9 9797623 9797704 -108064923 + MER5A DNA MER1_type 4 84 -105 317 291 46 69 chr9 9797709 9797884 -108064743 - MER5B DNA MER1_type -1 177 7 397 306 140 6 chr9 9798690 9798847 -108063780 + MER5A DNA MER1_type 10 187 -2 276 186 0 0 chr9 9800481 9800540 -108062087 + CT-rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr9 9801096 9801128 -108061499 + AT_rich Low_complexity Low_complexity 1 32 0 2272 112 0 92 chr9 9801940 9802341 -108060286 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr9 9803435 9803458 -108059169 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 9803529 9803557 -108059070 + AT_rich Low_complexity Low_complexity 1 28 0 192 217 0 0 chr9 9803670 9803716 -108058911 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 2336 131 11 8 chr9 9804051 9804425 -108058202 + THE1C LTR MaLR 1 375 0 818 289 122 30 chr9 9804533 9805364 -108057263 + L1MEd LINE L1 43 1130 -4989 225 83 0 0 chr9 9805367 9805403 -108057224 + (A)n Simple_repeat Simple_repeat 1 36 0 1940 156 0 10 chr9 9805409 9805723 -108056904 + AluSx SINE Alu 2 312 0 213 39 0 0 chr9 9805810 9805836 -108056791 + (TC)n Simple_repeat Simple_repeat 1 26 0 35 24 0 0 chr9 9806064 9806106 -108056521 + AT_rich Low_complexity Low_complexity 1 42 0 1515 291 132 48 chr9 9806107 9807242 -108055385 - L2 LINE L2 -1 3312 2094 541 269 54 21 chr9 9809305 9809491 -108053136 + MIR SINE MIR 4 195 -67 662 295 49 16 chr9 9809522 9809827 -108052800 - L1ME3A LINE L1 -192 5978 5664 401 363 81 4 chr9 9809985 9810219 -108052408 + MIR SINE MIR 5 256 -6 232 343 0 0 chr9 9811160 9811233 -108051394 + MIR SINE MIR 175 247 -15 314 400 22 17 chr9 9811879 9812109 -108050518 + L1MEd LINE L1 561 791 -5328 204 40 0 0 chr9 9813442 9813467 -108049160 + (TG)n Simple_repeat Simple_repeat 2 26 0 364 218 40 50 chr9 9814303 9814404 -108048223 - MIR3 SINE MIR -32 176 77 183 80 0 0 chr9 9814535 9814560 -108048067 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2907 9 0 0 chr9 9815498 9815814 -108046813 - AluYb8 SINE Alu -2 316 1 408 349 42 16 chr9 9816062 9816251 -108046376 + MIR SINE MIR 57 250 -12 206 394 55 0 chr9 9817128 9817255 -108045372 - L2 LINE L2 0 3272 3139 664 244 37 30 chr9 9817300 9817464 -108045163 + MER45A DNA AcHobo 4 168 -10 192 275 73 73 chr9 9817505 9817614 -108045013 - L2 LINE L2 -167 3146 3038 1771 173 0 0 chr9 9817615 9817904 -108044723 + AluSg SINE Alu 22 310 0 183 254 56 14 chr9 9818292 9818363 -108044264 - L2 LINE L2 -309 2963 2890 283 389 92 11 chr9 9818418 9818701 -108043926 + L2 LINE L2 2444 2749 -565 330 316 34 8 chr9 9818711 9818828 -108043799 + MIR SINE MIR 13 132 -130 202 325 70 13 chr9 9818912 9819069 -108043558 + L2 LINE L2 2764 2929 -385 181 386 45 0 chr9 9819120 9819208 -108043419 - MIR SINE MIR -105 157 66 288 248 91 33 chr9 9820129 9820250 -108042377 + MIR SINE MIR 97 224 -38 431 324 65 12 chr9 9820875 9821045 -108041582 + MIR SINE MIR 23 201 -61 333 0 0 0 chr9 9821529 9821566 -108041061 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr9 9822425 9822450 -108040177 + AT_rich Low_complexity Low_complexity 1 25 0 278 301 109 43 chr9 9822901 9823177 -108039450 + L1ME LINE L1 5572 5865 -256 363 258 16 121 chr9 9823399 9823581 -108039046 - MER91B DNA MER1_type -27 163 1 29 0 0 0 chr9 9823740 9823769 -108038858 + AT_rich Low_complexity Low_complexity 1 29 0 193 266 31 0 chr9 9824179 9824243 -108038384 + L2 LINE L2 3236 3301 -12 216 200 0 53 chr9 9824330 9824405 -108038222 + A-rich Low_complexity Low_complexity 2 72 0 705 238 17 50 chr9 9824488 9824669 -108037958 - MIR SINE MIR -10 252 78 1264 207 120 20 chr9 9825580 9825917 -108036710 + MLT1A2 LTR MaLR 4 463 -4 435 306 56 21 chr9 9825954 9826330 -108036297 + L1MEd LINE L1 753 1141 -4978 672 261 125 0 chr9 9826528 9826712 -108035915 + LTR16A LTR ERVL 231 437 -13 338 246 115 4 chr9 9827093 9827228 -108035399 + L1 LINE L1 4217 4362 -1784 554 327 47 14 chr9 9827320 9827534 -108035093 + MLT1H LTR MaLR 85 305 -244 208 110 64 37 chr9 9827758 9827867 -108034760 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 441 147 0 0 chr9 9827880 9827955 -108034672 - MADE1 DNA Mariner -5 75 1 15815 93 2 4 chr9 9828322 9830503 -108032124 + L1P LINE L1 1 2176 -3970 40644 71 3 2 chr9 9830647 9836816 -108025811 + L1PA5 LINE L1 1 6179 0 2136 168 10 22 chr9 9839018 9839435 -108023192 + L1 LINE L1 4419 4830 -1316 299 150 33 0 chr9 9839432 9839492 -108023135 + L1MA6 LINE L1 6230 6291 -9 * 214 169 31 15 chr9 9839557 9839622 -108023005 + (TTATA)n Simple_repeat Simple_repeat 4 69 0 1478 157 45 63 chr9 9839954 9840240 -108022387 + AluJo SINE Alu 1 281 -31 27 29 0 0 chr9 9840427 9840461 -108022166 + AT_rich Low_complexity Low_complexity 1 34 0 495 303 95 35 chr9 9840807 9841124 -108021503 + LTR16C LTR ERVL 156 491 0 23 0 0 0 chr9 9842210 9842233 -108020394 + AT_rich Low_complexity Low_complexity 1 23 0 1309 202 33 85 chr9 9842620 9842986 -108019641 - MLT1B LTR MaLR -42 348 2 586 276 13 0 chr9 9844502 9844658 -108017969 - MIR SINE MIR -53 209 52 23 0 0 0 chr9 9845008 9845031 -108017596 + AT_rich Low_complexity Low_complexity 1 23 0 950 317 50 12 chr9 9845583 9845987 -108016640 - LTR16A LTR ERVL -31 419 1 2121 13 0 0 chr9 9847255 9847490 -108015137 + 7SLRNA srpRNA srpRNA 1 235 -85 254 313 10 20 chr9 9848090 9848189 -108014438 + (TATG)n Simple_repeat Simple_repeat 1 98 0 180 0 0 0 chr9 9848438 9848458 -108014169 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 190 329 0 94 chr9 9848463 9848548 -108014079 - L3b LINE CR1 -24 1559 1483 930 306 122 31 chr9 9848570 9849079 -108013548 + MLT1H1 LTR MaLR 1 555 0 2665 96 8 8 chr9 9850622 9850997 -108011630 - THE1C LTR MaLR 0 375 1 286 245 10 69 chr9 9851753 9851855 -108010772 - L2 LINE L2 -9 3304 3209 5776 109 7 9 chr9 9851855 9852870 -108009757 + L1PA13 LINE L1 5136 6149 -14 944 337 117 10 chr9 9852982 9853374 -108009253 - L2 LINE L2 -340 2974 2541 180 403 16 23 chr9 9853402 9853436 -108009191 - L2 LINE L2 0 3313 3280 1627 146 52 78 chr9 9853436 9853819 -108008808 + THE1C LTR MaLR 1 373 -2 180 403 16 23 chr9 9853819 9853913 -108008714 - L2 LINE L2 -33 3280 3186 4838 110 19 3 chr9 9854932 9855291 -108007336 - L1PB2 LINE L1 0 6151 5799 381 22 0 0 chr9 9855291 9855337 -108007290 + (TG)n Simple_repeat Simple_repeat 2 47 0 4838 110 19 3 chr9 9855337 9855703 -108006924 - L1PB2 LINE L1 -352 5799 5414 417 70 0 0 chr9 9856134 9856191 -108006436 + (CA)n Simple_repeat Simple_repeat 2 58 0 22 70 0 0 chr9 9856525 9856568 -108006059 + AT_rich Low_complexity Low_complexity 1 43 0 592 319 79 45 chr9 9856667 9857167 -108005460 + L1MEd LINE L1 604 1145 -4974 341 339 34 21 chr9 9857210 9857535 -108005092 + L1MEd LINE L1 1230 1558 -4752 26 30 0 0 chr9 9858583 9858616 -108004011 + AT_rich Low_complexity Low_complexity 1 33 0 844 260 10 0 chr9 9859382 9859590 -108003037 + MER63A DNA MER1_type 1 210 0 246 297 54 0 chr9 9859937 9860011 -108002616 - L2 LINE L2 -7 3265 3188 276 100 0 0 chr9 9860026 9860066 -108002561 + (TA)n Simple_repeat Simple_repeat 2 41 0 34 0 0 0 chr9 9860472 9860506 -108002121 + AT_rich Low_complexity Low_complexity 1 34 0 25 51 0 0 chr9 9860583 9860622 -108002005 + AT_rich Low_complexity Low_complexity 1 39 0 595 346 35 4 chr9 9861820 9862074 -108000553 - MIR SINE MIR 0 262 1 1502 206 7 0 chr9 9863866 9864153 -107998474 + AluJb SINE Alu 12 300 -12 483 229 0 9 chr9 9864330 9864439 -107998188 + L1PB4 LINE L1 744 851 -5353 * 5544 196 24 4 chr9 9864429 9866516 -107996111 + L1PB4 LINE L1 4073 6197 -16 329 345 131 35 chr9 9867031 9867344 -107995283 + L2 LINE L2 2966 3308 -5 234 294 0 11 chr9 9868556 9868648 -107993979 + GA-rich Low_complexity Low_complexity 1 91 0 778 217 30 30 chr9 9868830 9868927 -107993700 - L1PA16 LINE L1 0 6166 6070 2777 174 8 4 chr9 9868927 9869422 -107993205 + LOR1a LTR ERV1 1 497 0 778 217 30 30 chr9 9869422 9869527 -107993100 - L1PA16 LINE L1 -95 6071 5964 1575 203 3 3 chr9 9871222 9871508 -107991119 + AluJb SINE Alu 1 286 -26 22 0 0 0 chr9 9871887 9871909 -107990718 + AT_rich Low_complexity Low_complexity 1 22 0 313 299 59 21 chr9 9872026 9872213 -107990414 - L1M4 LINE L1 -1430 4716 4523 216 0 0 0 chr9 9872409 9872433 -107990194 + (T)n Simple_repeat Simple_repeat 1 24 0 2062 131 3 0 chr9 9872501 9872806 -107989821 + AluSx SINE Alu 1 306 -6 429 296 107 67 chr9 9872948 9873502 -107989125 - L1M4 LINE L1 -2229 3917 3342 303 290 137 48 chr9 9873706 9874020 -107988607 - L1M4 LINE L1 -3037 3109 2768 915 172 90 37 chr9 9874229 9874497 -107988130 + MER33 DNA MER1_type 27 308 -16 2801 16 0 0 chr9 9877500 9877813 -107984814 - AluYb8 SINE Alu -5 313 1 5291 188 36 12 chr9 9878146 9880269 -107982358 - L1MA5 LINE L1 0 6300 4126 365 318 68 21 chr9 9880755 9880947 -107981680 - MLT1K LTR MaLR -34 554 354 250 373 47 18 chr9 9881003 9881172 -107981455 - MER5A DNA MER1_type -1 188 15 185 274 129 65 chr9 9881405 9881529 -107981098 - MIR SINE MIR -61 147 16 2095 127 7 0 chr9 9882036 9882344 -107980283 - AluSp SINE Alu -3 310 1 413 257 203 7 chr9 9883720 9883868 -107978759 - MIR SINE MIR -12 250 74 22 70 0 0 chr9 9883993 9884036 -107978591 + AT_rich Low_complexity Low_complexity 1 43 0 258 32 0 0 chr9 9884731 9884762 -107977865 + (CA)n Simple_repeat Simple_repeat 1 31 0 205 330 32 0 chr9 9884863 9884957 -107977670 - MIR SINE MIR -71 191 95 266 0 0 29 chr9 9885109 9885144 -107977483 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 277 318 70 31 chr9 9886316 9886445 -107976182 + MIR SINE MIR 68 201 -61 291 54 0 0 chr9 9886472 9886509 -107976118 + (ATG)n Simple_repeat Simple_repeat 3 39 0 216 361 60 8 chr9 9886666 9886799 -107975828 + MIR SINE MIR 51 190 -72 926 185 58 62 chr9 9886830 9887106 -107975521 - ORSL DNA AcHobo 0 275 1 382 149 0 0 chr9 9887749 9887816 -107974811 - L1MC2 LINE L1 -2 6342 6276 23 78 0 0 chr9 9889507 9889558 -107973069 + AT_rich Low_complexity Low_complexity 1 51 0 923 253 54 54 chr9 9889568 9889940 -107972687 + L1ME3 LINE L1 5789 6160 -2 736 312 40 8 chr9 9889944 9890194 -107972433 - MIR SINE MIR -3 259 2 2313 110 0 0 chr9 9891251 9891561 -107971066 + AluSg SINE Alu 1 310 0 202 338 0 0 chr9 9891888 9891962 -107970665 + T-rich Low_complexity Low_complexity 3 76 0 265 323 136 39 chr9 9892078 9892335 -107970292 + L2 LINE L2 3008 3289 -24 32 26 0 0 chr9 9892373 9892412 -107970215 + AT_rich Low_complexity Low_complexity 1 39 0 4058 42 0 0 chr9 9892440 9892936 -107969691 - L1PA4 LINE L1 0 6155 5660 22 0 0 0 chr9 9893058 9893080 -107969547 + AT_rich Low_complexity Low_complexity 1 22 0 11090 215 70 31 chr9 9893974 9898054 -107964573 + L1MB3 LINE L1 6 4246 -2136 2578 188 19 0 chr9 9898054 9898532 -107964095 + Tigger1 DNA MER2_type 1 487 -1931 5610 152 25 34 chr9 9898534 9898889 -107963738 + Tigger1 DNA MER2_type 1123 1479 -939 2503 72 0 0 chr9 9898889 9899196 -107963431 + AluY SINE Alu 3 309 -2 5610 152 25 34 chr9 9899196 9899911 -107962716 + Tigger1 DNA MER2_type 1479 2184 -234 2514 230 95 7 chr9 9899911 9900598 -107962029 + L1MB3 LINE L1 4539 5285 -1097 2317 189 111 34 chr9 9900790 9901516 -107961111 + LTR28 LTR ERV1 204 1020 0 4723 188 33 19 chr9 9901521 9901945 -107960682 + L1MB3 LINE L1 5300 5717 -702 193 0 94 0 chr9 9901945 9901977 -107960650 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4723 188 33 19 chr9 9901977 9902670 -107959957 + L1MB3 LINE L1 5717 6419 0 364 312 19 0 chr9 9903238 9903376 -107959251 + MIR3 SINE MIR 63 205 -3 267 179 0 0 chr9 9904325 9904392 -107958235 + CT-rich Low_complexity Low_complexity 2 68 0 315 187 0 112 chr9 9905841 9905975 -107956652 + L1 LINE L1 2889 3007 -3139 2441 175 63 15 chr9 9905990 9906515 -107956112 - L1MA10 LINE L1 -2 6332 5783 1973 262 50 7 chr9 9906513 9907094 -107955533 + L1ME2 LINE L1 5530 6135 -29 * 2094 146 14 97 chr9 9907693 9908178 -107954449 + MER65A LTR ERV1 1 445 0 1776 228 33 4 chr9 9908506 9908958 -107953669 + L1 LINE L1 3959 4423 -1723 388 271 83 31 chr9 9909054 9909246 -107953381 + LTR16B LTR ERVL 263 464 0 21 0 0 0 chr9 9910073 9910094 -107952533 + AT_rich Low_complexity Low_complexity 1 21 0 200 279 73 78 chr9 9910225 9910404 -107952223 + L3b LINE CR1 1234 1411 -172 262 279 82 74 chr9 9910964 9911462 -107951165 + L1ME4a LINE L1 5619 6120 -1 22 35 0 0 chr9 9913068 9913097 -107949530 + AT_rich Low_complexity Low_complexity 1 29 0 2829 154 2 21 chr9 9913313 9913794 -107948833 + LOR1a LTR ERV1 26 497 0 28 29 0 0 chr9 9913825 9913860 -107948767 + AT_rich Low_complexity Low_complexity 1 35 0 262 270 52 17 chr9 9913891 9914006 -107948621 + LTR33A LTR ERVL 1 119 -404 241 281 78 66 chr9 9914169 9914336 -107948291 + LTR33A LTR ERVL 346 514 -9 207 305 0 0 chr9 9914390 9914449 -107948178 + L2 LINE L2 3209 3267 -5 21 0 0 0 chr9 9914798 9914819 -107947808 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr9 9919700 9919741 -107942886 + AT_rich Low_complexity Low_complexity 1 41 0 1958 135 0 0 chr9 9920548 9920858 -107941769 - AluSc SINE Alu 0 318 9 829 269 89 27 chr9 9923016 9923656 -107938971 + L1M4 LINE L1 2749 3428 -2718 564 281 26 6 chr9 9923645 9924044 -107938583 + L1M4 LINE L1 4399 4844 -1302 * 204 154 0 0 chr9 9924296 9924348 -107938279 + (TA)n Simple_repeat Simple_repeat 1 52 0 276 258 314 8 chr9 9924950 9925074 -107937553 + MER5A DNA MER1_type 24 185 -4 2261 105 3 0 chr9 9925906 9926210 -107936417 + AluSp SINE Alu 1 305 -8 25 31 0 0 chr9 9926701 9926733 -107935894 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr9 9927161 9927191 -107935436 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr9 9927476 9927496 -107935131 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 310 283 112 52 chr9 9927623 9927856 -107934771 + L2 LINE L2 1869 2115 -1199 363 256 101 23 chr9 9927916 9928045 -107934582 + MLT1K LTR MaLR 83 221 -367 322 268 41 32 chr9 9928128 9928251 -107934376 + MLT1K LTR MaLR 352 475 -113 226 250 0 54 chr9 9928286 9928342 -107934285 + polypyrimidine Low_complexity Low_complexity 4 56 0 2281 54 7 0 chr9 9928868 9929183 -107933444 - AluY SINE Alu 0 319 3 289 315 20 0 chr9 9929884 9930004 -107932623 - L1ME3 LINE L1 -53 6109 5988 711 281 109 19 chr9 9930087 9930454 -107932173 - L1ME3 LINE L1 -216 5954 5555 27 0 0 0 chr9 9930464 9930491 -107932136 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr9 9930916 9930938 -107931689 + AT_rich Low_complexity Low_complexity 1 22 0 988 322 49 16 chr9 9931966 9932454 -107930173 + L1MEc LINE L1 454 957 -5764 432 315 70 32 chr9 9932525 9932896 -107929731 + L1MEc LINE L1 1521 1905 -4635 * 1088 207 66 68 chr9 9932887 9932957 -107929670 + L1ME1 LINE L1 5022 5091 -1075 2146 110 20 3 chr9 9932957 9933258 -107929369 - AluSg SINE Alu 0 310 5 1088 207 66 68 chr9 9933258 9933849 -107928778 + L1ME1 LINE L1 5091 5678 -488 266 259 9 19 chr9 9933851 9933959 -107928668 + (TA)n Simple_repeat Simple_repeat 2 108 0 2824 175 39 3 chr9 9933984 9934595 -107928032 + L1MA4A LINE L1 2934 3566 -2580 3012 153 26 34 chr9 9934597 9935210 -107927417 + L1MA4A LINE L1 5685 6292 -11 353 222 0 44 chr9 9935227 9935317 -107927310 + L1ME1 LINE L1 5774 5859 -307 1143 203 64 4 chr9 9935583 9935849 -107926778 - L1MB5 LINE L1 -305 5869 5588 204 256 26 0 chr9 9935922 9936000 -107926627 + (TA)n Simple_repeat Simple_repeat 1 80 0 207 284 49 78 chr9 9938923 9939025 -107923602 - L2 LINE L2 -18 3295 3197 209 320 73 87 chr9 9941150 9941356 -107921271 - MIR SINE MIR -7 255 53 23 33 0 0 chr9 9941903 9941933 -107920694 + AT_rich Low_complexity Low_complexity 1 30 0 744 322 107 30 chr9 9942939 9943433 -107919194 - L2 LINE L2 0 3313 2778 275 356 34 0 chr9 9944275 9944393 -107918234 - L2 LINE L2 -2 3311 3190 250 364 28 14 chr9 9944729 9944872 -107917755 - L2 LINE L2 -1855 1459 1315 265 252 39 79 chr9 9944887 9945014 -107917613 + L1ME2 LINE L1 18 139 -6284 320 287 89 63 chr9 9945284 9945521 -107917106 + MLT1H1 LTR MaLR 187 429 -126 659 249 51 68 chr9 9945927 9946321 -107916306 + L1ME2 LINE L1 3825 4211 -2730 * 2302 232 75 48 chr9 9946313 9947404 -107915223 + L1ME2 LINE L1 5738 6854 -105 23 68 0 0 chr9 9947484 9947528 -107915099 + AT_rich Low_complexity Low_complexity 1 44 0 194 0 0 37 chr9 9947722 9947749 -107914878 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 291 273 140 13 chr9 9948505 9948655 -107913972 + MARNA DNA Mariner 91 259 -327 28 0 0 0 chr9 9948790 9948818 -107913809 + AT_rich Low_complexity Low_complexity 1 28 0 3235 176 70 16 chr9 9949012 9949656 -107912971 - L1MC1 LINE L1 -13 6320 5642 2102 227 44 70 chr9 9949660 9950387 -107912240 - L1MC1 LINE L1 -1312 4834 4127 202 214 45 135 chr9 9950720 9950809 -107911818 - MIR SINE MIR 0 262 182 1705 167 48 80 chr9 9950960 9951420 -107911207 + MER65A LTR ERV1 1 445 0 368 298 86 20 chr9 9951482 9951633 -107910994 + MIR SINE MIR 96 256 -6 1294 279 57 46 chr9 9951764 9951827 -107910800 + L1ME LINE L1 2041 2102 -4839 252 0 0 0 chr9 9951827 9951855 -107910772 + (CA)n Simple_repeat Simple_repeat 1 28 0 1294 279 57 46 chr9 9951855 9952428 -107910199 + L1ME LINE L1 2102 2667 -4274 1545 112 40 0 chr9 9952428 9952652 -107909975 - AluSg/x SINE Alu -2 308 76 1294 279 57 46 chr9 9952652 9953089 -107909538 + L1ME LINE L1 2667 3491 -3450 855 221 51 72 chr9 9953087 9953572 -107909055 + L1ME LINE L1 5835 6306 -651 * 384 196 88 10 chr9 9953574 9953676 -107908951 + L1ME LINE L1 6389 6498 -461 * 931 255 39 23 chr9 9953672 9953978 -107908649 + L1MC/D LINE L1 4837 5147 -999 1944 164 112 0 chr9 9954000 9954365 -107908262 + MLT2C2 LTR ERVL 10 415 -49 338 156 66 42 chr9 9954420 9954587 -107908040 + (TATATG)n Simple_repeat Simple_repeat 2 172 0 275 133 0 0 chr9 9954595 9954640 -107907987 + MLT2C2 LTR ERVL 459 503 -12 1630 212 66 22 chr9 9954651 9955196 -107907431 + L1MC/D LINE L1 5146 5709 -650 349 239 116 29 chr9 9956082 9956220 -107906407 - MIR SINE MIR -21 241 92 22 56 0 0 chr9 9957067 9957103 -107905524 + AT_rich Low_complexity Low_complexity 1 36 0 345 301 47 31 chr9 9957359 9957552 -107905075 - MIR SINE MIR -10 252 57 2553 127 72 2 chr9 9960022 9960439 -107902188 - Tigger2 DNA MER2_type 0 2718 2273 372 157 29 14 chr9 9960426 9960496 -107902131 - Tigger2 DNA MER2_type -2646 72 2 * 3537 165 46 16 chr9 9961149 9961813 -107900814 + MER4D LTR ERV1 1 684 -219 3188 127 47 61 chr9 9961813 9962436 -107900191 - LTR18B LTR ERVL 0 614 1 3071 191 5 29 chr9 9962637 9963193 -107899434 - HERVL18 LTR ERVL -2556 3491 2949 728 196 23 0 chr9 9963189 9963322 -107899305 - HERVL18 LTR ERVL -2963 3084 2949 * 1191 177 54 6 chr9 9963318 9963596 -107899031 - HERVL18 LTR ERVL -2963 3084 2718 715 160 8 6 chr9 9963593 9963821 -107898806 - HERVL18 LTR ERVL -3595 2452 2119 * 1056 205 22 7 chr9 9963820 9964187 -107898440 - HERVL18 LTR ERVL -4237 1810 1375 1497 205 14 4 chr9 9964386 9964664 -107897963 - HERVL18 LTR ERVL -5760 287 7 2961 132 52 55 chr9 9964676 9965292 -107897335 - LTR18B LTR ERVL 0 614 1 1204 178 9 13 chr9 9965292 9965517 -107897110 + MER4D LTR ERV1 680 903 0 1690 299 92 46 chr9 9965779 9967043 -107895584 + L2 LINE L2 2005 3311 -2 195 312 143 26 chr9 9967955 9968109 -107894518 - MER5A DNA MER1_type 0 189 18 221 359 46 38 chr9 9968174 9968305 -107894322 - MER5B DNA MER1_type -25 153 22 23 0 0 0 chr9 9968464 9968487 -107894140 + AT_rich Low_complexity Low_complexity 1 23 0 307 390 0 8 chr9 9968487 9968605 -107894022 + MER5A DNA MER1_type 73 189 0 261 0 0 0 chr9 9968915 9968944 -107893683 + (T)n Simple_repeat Simple_repeat 1 29 0 180 375 29 39 chr9 9970376 9970480 -107892147 - MIR SINE MIR -140 122 20 21 0 0 0 chr9 9971061 9971082 -107891545 + AT_rich Low_complexity Low_complexity 1 21 0 222 284 27 14 chr9 9971123 9971197 -107891430 - L2 LINE L2 -194 3078 3004 674 324 110 55 chr9 9971669 9972252 -107890375 + MLT1L LTR MaLR 1 615 0 187 373 28 28 chr9 9972254 9972396 -107890231 - MIR3 SINE MIR -6 202 61 265 263 53 13 chr9 9972910 9972986 -107889641 + L2 LINE L2 3189 3267 -5 183 80 0 0 chr9 9974227 9974252 -107888375 + (TTA)n Simple_repeat Simple_repeat 2 26 0 24 103 0 0 chr9 9975786 9975873 -107886754 + AT_rich Low_complexity Low_complexity 1 87 0 305 257 29 48 chr9 9975965 9976171 -107886456 + L1ME3A LINE L1 5009 5210 -936 519 252 0 8 chr9 9976200 9976319 -107886308 + MER63 DNA MER1_type 1 744 -92 230 129 12 71 chr9 9976569 9976654 -107885973 + L1MC4 LINE L1 6624 6703 -1339 269 239 14 0 chr9 9976655 9976726 -107885901 + (TA)n Simple_repeat Simple_repeat 1 72 0 1018 251 103 68 chr9 9976728 9977566 -107885061 + L1ME3A LINE L1 5282 6160 -2 24 32 0 0 chr9 9977605 9977636 -107884991 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr9 9978038 9978074 -107884553 + AT_rich Low_complexity Low_complexity 1 36 0 2281 97 7 3 chr9 9979469 9979827 -107882800 + AluSg SINE Alu 1 359 0 1820 170 6 3 chr9 9981312 9981623 -107881004 + AluJb SINE Alu 1 312 0 2266 118 0 0 chr9 9981796 9982102 -107880525 + AluSx SINE Alu 3 308 -4 27 0 0 0 chr9 9982575 9982602 -107880025 + AT_rich Low_complexity Low_complexity 1 27 0 303 321 290 0 chr9 9982910 9983103 -107879524 - MIR SINE MIR -2 260 12 560 300 58 5 chr9 9983265 9983455 -107879172 - MIR SINE MIR -10 252 53 1235 107 54 29 chr9 9983463 9983668 -107878959 - L1PA10 LINE L1 -4 6164 5955 4700 158 21 37 chr9 9983738 9984569 -107878058 - L1PB4 LINE L1 -5 6151 5334 2177 126 0 0 chr9 9984569 9984879 -107877748 - AluSx SINE Alu -2 310 1 4700 158 21 37 chr9 9984879 9985037 -107877590 - L1PB4 LINE L1 -822 5334 5175 22 0 0 0 chr9 9985200 9985222 -107877405 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 33 33 chr9 9985878 9985970 -107876657 - L2 LINE L2 0 3272 3181 639 309 116 56 chr9 9986144 9986558 -107876069 + MLT1J LTR MaLR 1 439 -72 346 227 13 8 chr9 9986560 9986691 -107875936 + L1MB7 LINE L1 5951 6184 0 285 194 30 45 chr9 9988036 9988103 -107874524 - MER5A DNA MER1_type 0 189 124 253 204 19 0 chr9 9988113 9988167 -107874460 + MER5A DNA MER1_type 55 109 -80 189 0 0 0 chr9 9988390 9988411 -107874216 + (TTA)n Simple_repeat Simple_repeat 2 22 0 315 341 66 57 chr9 9989335 9989701 -107872926 + L2 LINE L2 2132 2500 -814 1777 206 12 38 chr9 9989739 9990210 -107872417 - MER89 LTR ERV1 -2 557 1 220 274 32 16 chr9 9991170 9991232 -107871395 + MIR SINE MIR 48 110 -152 22 56 0 0 chr9 9991241 9991277 -107871350 + AT_rich Low_complexity Low_complexity 1 36 0 456 323 37 1 chr9 9991322 9991495 -107871132 - MIR SINE MIR -44 218 45 430 194 291 15 chr9 9991609 9991743 -107870884 - MER5A DNA MER1_type 0 189 19 2133 163 50 5 chr9 9991743 9992179 -107870448 + L1MA4A LINE L1 5848 6303 0 22 35 0 0 chr9 9993351 9993380 -107869247 + AT_rich Low_complexity Low_complexity 1 29 0 403 213 131 0 chr9 9993696 9993818 -107868809 - MER104 DNA Tc2 -13 167 30 269 346 23 0 chr9 9993874 9994004 -107868623 + L1ME LINE L1 5492 5624 -497 378 333 29 0 chr9 9994295 9994400 -107868227 + L2 LINE L2 3193 3300 -13 24 0 0 0 chr9 9994634 9994658 -107867969 + AT_rich Low_complexity Low_complexity 1 24 0 2213 226 51 36 chr9 9995021 9995631 -107866996 + MLT1E2 LTR MaLR 1 619 -7 1954 145 54 0 chr9 9995706 9996057 -107866570 - L1MA6 LINE L1 0 6300 5931 221 148 0 19 chr9 9996336 9996390 -107866237 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 2067 153 0 0 chr9 9996797 9997105 -107865522 + AluSx SINE Alu 5 312 0 308 122 23 0 chr9 9997105 9997190 -107865437 + GA-rich Low_complexity Low_complexity 1 86 0 203 0 37 0 chr9 9997222 9997249 -107865378 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 191 122 0 24 chr9 9997381 9997422 -107865205 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 2065 218 14 6 chr9 9998296 9998788 -107863839 - L1PB1 LINE L1 -988 5158 4663 * 3041 100 0 10 chr9 9998785 9999308 -107863319 + L1PB1 LINE L1 5164 5682 -469 442 118 39 33 chr9 9999308 9999461 -107863166 + (TA)n Simple_repeat Simple_repeat 1 154 0 297 51 0 0 chr9 9999492 9999569 -107863058 + (TG)n Simple_repeat Simple_repeat 1 116 0 297 51 0 0 chr9 9999569 9999608 -107863019 + (TG)n Simple_repeat Simple_repeat 2 40 0 2301 132 3 5 chr9 9999614 9999984 -107862643 + L1PB1 LINE L1 5783 6151 0 23 0 0 0 chr9 9999984 10000007 -107862620 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr9 10002505 10002538 -107860089 + AT_rich Low_complexity Low_complexity 1 33 0 220 320 43 38 chr9 10002806 10002922 -107859705 + MIR SINE MIR 1 124 -84 286 344 57 53 chr9 10003188 10003435 -107859192 - MIR SINE MIR 0 262 15 300 274 37 53 chr9 10003512 10003702 -107858925 - L1MEd LINE L1 -4955 1164 978 353 304 85 36 chr9 10003767 10004014 -107858613 + L1M4 LINE L1 4317 4575 -1571 198 71 0 0 chr9 10004429 10004457 -107858170 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 357 24 0 0 chr9 10005142 10005184 -107857443 + (TG)n Simple_repeat Simple_repeat 1 42 0 399 257 91 67 chr9 10005696 10005906 -107856721 - L2 LINE L2 -2 3311 3097 26 0 0 0 chr9 10006386 10006412 -107856215 + AT_rich Low_complexity Low_complexity 1 26 0 245 309 49 0 chr9 10006523 10006604 -107856023 + MIR SINE MIR 118 202 -60 1753 191 15 9 chr9 10007480 10007815 -107854812 + MER1B DNA MER1_type 1 337 0 528 105 42 0 chr9 10007873 10007968 -107854659 - L1PA15 LINE L1 -2 6163 6065 28 0 0 0 chr9 10008011 10008039 -107854588 + AT_rich Low_complexity Low_complexity 1 28 0 224 380 96 0 chr9 10009580 10009746 -107852881 - L2 LINE L2 -527 2787 2606 360 0 0 0 chr9 10010996 10011036 -107851591 + (A)n Simple_repeat Simple_repeat 1 40 0 275 319 69 9 chr9 10011379 10011495 -107851132 - MIR SINE MIR -18 244 122 363 338 58 0 chr9 10012129 10012268 -107850359 + MIR SINE MIR 116 262 0 191 122 0 24 chr9 10013398 10013439 -107849188 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 2066 137 0 0 chr9 10013486 10013792 -107848835 - AluSx SINE Alu -5 307 2 313 287 75 46 chr9 10013932 10014106 -107848521 + MER102a DNA MER1_type 143 321 -9 300 279 68 14 chr9 10014764 10014911 -107847716 - L1ME4a LINE L1 -3 6118 5964 183 163 0 70 chr9 10014947 10014990 -107847637 + L2 LINE L2 3234 3273 -40 404 261 179 31 chr9 10015012 10015269 -107847358 - L1ME4a LINE L1 -170 5951 5657 400 236 250 0 chr9 10016993 10017133 -107845494 - MER5A DNA MER1_type 0 189 15 396 59 0 0 chr9 10017153 10017204 -107845423 + (TA)n Simple_repeat Simple_repeat 1 51 0 306 282 254 7 chr9 10017715 10017857 -107844770 + MER5A DNA MER1_type 13 189 0 258 281 83 10 chr9 10018024 10018120 -107844507 + MIR SINE MIR 151 253 -9 252 217 17 0 chr9 10018126 10018186 -107844441 + (TA)n Simple_repeat Simple_repeat 1 61 0 617 176 111 33 chr9 10018894 10019047 -107843580 + LTR41 LTR ERVL 1 165 -608 272 203 0 17 chr9 10019605 10019664 -107842963 + LTR41 LTR ERVL 710 767 -6 456 297 104 25 chr9 10019754 10019956 -107842671 - MIR SINE MIR -44 218 1 547 220 68 17 chr9 10020193 10020370 -107842257 - MER53 DNA DNA -3 186 1 873 129 14 14 chr9 10020727 10020874 -107841753 + MER41B LTR ERV1 392 538 -97 673 98 20 0 chr9 10020874 10020976 -107841651 - L1P LINE L1 -3327 2819 2716 308 203 9 59 chr9 10020978 10021088 -107841539 + MER41A LTR ERV1 403 474 -12 216 339 57 42 chr9 10021532 10021724 -107840903 - L2 LINE L2 -234 3038 2844 2595 48 0 0 chr9 10021821 10022132 -107840495 + AluY SINE Alu 1 311 0 671 341 165 14 chr9 10022467 10023386 -107839241 - L2 LINE L2 -689 2625 1568 356 226 33 2 chr9 10023462 10024003 -107838624 + (TA)n Simple_repeat Simple_repeat 1 557 0 267 133 0 0 chr9 10024004 10024049 -107838578 + (GA)n Simple_repeat Simple_repeat 1 45 0 183 250 0 0 chr9 10024312 10024348 -107838279 + L2 LINE L2 3191 3226 -87 312 283 43 0 chr9 10027679 10027771 -107834856 + MER5A DNA MER1_type 15 110 -79 210 37 0 0 chr9 10028304 10028331 -107834296 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1955 137 0 18 chr9 10028333 10028618 -107834009 - AluSx SINE Alu -32 280 1 940 277 5 9 chr9 10029923 10030143 -107832484 - MER58A DNA MER1_type 0 224 6 280 311 44 11 chr9 10030351 10030441 -107832186 + L2 LINE L2 3208 3300 -13 186 209 0 0 chr9 10030580 10030623 -107832004 + GA-rich Low_complexity Low_complexity 4 46 0 192 344 109 27 chr9 10030695 10030878 -107831749 - MIR SINE MIR -50 212 15 1909 131 28 3 chr9 10031062 10031344 -107831283 + AluSx SINE Alu 1 289 -23 248 275 100 0 chr9 10031827 10031907 -107830720 - L2 LINE L2 -1 3312 3225 25 75 0 0 chr9 10032863 10032916 -107829711 + AT_rich Low_complexity Low_complexity 1 53 0 2249 93 6 13 chr9 10032922 10033234 -107829393 + AluSg SINE Alu 1 310 0 328 179 12 12 chr9 10033250 10033334 -107829293 + (TA)n Simple_repeat Simple_repeat 2 85 0 23 78 0 0 chr9 10034749 10034800 -107827827 + AT_rich Low_complexity Low_complexity 1 51 0 186 344 33 0 chr9 10034869 10034930 -107827697 + L2 LINE L2 3246 3308 -5 261 299 41 21 chr9 10035092 10035189 -107827438 + MIR SINE MIR 1 99 -163 297 0 0 0 chr9 10035223 10035256 -107827371 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1989 202 38 44 chr9 10036104 10036609 -107826018 + L1MB7 LINE L1 5667 6168 -16 201 321 46 38 chr9 10036856 10036987 -107825640 - L2 LINE L2 -223 3049 2918 2025 137 0 22 chr9 10037043 10037356 -107825271 + AluSx SINE Alu 1 306 -6 349 304 10 57 chr9 10039728 10039922 -107822705 + L2 LINE L2 2427 2611 -703 233 197 0 33 chr9 10040476 10040537 -107822090 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 255 343 133 20 chr9 10040548 10040796 -107821831 + MLT1L LTR MaLR 220 495 -120 930 222 33 111 chr9 10040798 10041194 -107821433 - MLT1A1 LTR MaLR 0 365 1 6218 234 122 10 chr9 10041195 10042755 -107819872 - MLT1A1-int LTR MaLR -1 1734 1 789 172 126 128 chr9 10042755 10043121 -107819506 - MLT1A1 LTR MaLR 0 365 1 298 298 44 51 chr9 10043214 10043372 -107819255 + L2 LINE L2 3156 3312 -1 211 364 146 12 chr9 10043460 10043625 -107819002 - L3 LINE CR1 -377 1200 1014 743 335 80 29 chr9 10044065 10044588 -107818039 + MLT1K LTR MaLR 37 586 -2 4728 85 15 14 chr9 10045542 10045966 -107816661 + PABL_A LTR ERV1 1 428 -232 4307 10 0 0 chr9 10045966 10046454 -107816173 + L1PA2 LINE L1 5663 6150 -5 4728 85 15 14 chr9 10046454 10046688 -107815939 + PABL_A LTR ERV1 428 660 0 451 310 23 40 chr9 10046774 10046948 -107815679 - MIR SINE MIR -47 215 45 208 344 21 10 chr9 10047114 10047210 -107815417 - MER5A DNA MER1_type -78 111 15 897 180 16 86 chr9 10048608 10048853 -107813774 + LTR1B LTR ERV1 1 228 -598 936 194 150 70 chr9 10048868 10049256 -107813371 + LTR1B LTR ERV1 347 775 -10 421 257 38 0 chr9 10049256 10049361 -107813266 + MIR SINE MIR 83 191 -71 255 61 0 0 chr9 10049478 10049511 -107813116 + (TA)n Simple_repeat Simple_repeat 1 33 0 301 175 0 0 chr9 10049933 10049996 -107812631 - L1MA3 LINE L1 -3 6302 6240 225 263 152 79 chr9 10050208 10050333 -107812294 - L1MEc LINE L1 -4702 1608 1494 474 33 0 0 chr9 10050333 10050393 -107812234 + (TG)n Simple_repeat Simple_repeat 2 61 0 225 263 152 79 chr9 10050393 10050674 -107811953 - L1MEc LINE L1 -4816 1494 1172 1510 141 121 33 chr9 10050683 10050988 -107811639 - MER44D DNA MER2_type -1 608 7 469 325 90 62 chr9 10051041 10051844 -107810783 - L1MEc LINE L1 -5026 1093 269 31 26 0 0 chr9 10053845 10053883 -107808744 + AT_rich Low_complexity Low_complexity 1 38 0 1547 145 92 45 chr9 10054031 10054389 -107808238 + THE1C LTR MaLR 1 375 0 1236 163 54 0 chr9 10054390 10054611 -107808016 - L1P LINE L1 -2283 3863 3631 1417 113 24 0 chr9 10054611 10054821 -107807806 + L1PA13 LINE L1 5945 6161 -2 28 79 0 0 chr9 10054892 10054955 -107807672 + AT_rich Low_complexity Low_complexity 1 63 0 286 297 81 0 chr9 10055025 10055136 -107807491 - MIR SINE MIR -73 189 70 3755 99 13 2 chr9 10055272 10055818 -107806809 - L1PA13 LINE L1 -2 6161 5610 2254 89 6 25 chr9 10055857 10056172 -107806455 - AluY SINE Alu -2 309 1 1947 145 7 3 chr9 10056648 10056944 -107805683 - AluSq SINE Alu -16 297 1 2917 3 0 0 chr9 10057091 10057409 -107805218 + AluYb8 SINE Alu 1 318 0 23 33 0 0 chr9 10057961 10057991 -107804636 + AT_rich Low_complexity Low_complexity 1 30 0 225 281 0 0 chr9 10058440 10058497 -107804130 + L1MD3 LINE L1 6619 6675 -1320 219 103 0 0 chr9 10059023 10059062 -107803565 + (TA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr9 10059123 10059144 -107803483 + AT_rich Low_complexity Low_complexity 1 21 0 4989 163 32 61 chr9 10059181 10059318 -107803309 + L1MC1 LINE L1 5185 5324 -1009 1960 151 3 0 chr9 10059318 10059602 -107803025 + AluSx SINE Alu 1 285 -27 564 15 0 0 chr9 10059606 10059671 -107802956 + (CAAAC)n Simple_repeat Simple_repeat 2 66 0 4989 163 32 61 chr9 10059671 10059726 -107802901 + L1MC1 LINE L1 5327 5382 -951 1980 139 0 0 chr9 10059726 10060020 -107802607 + AluSx SINE Alu 1 294 -18 4989 163 32 61 chr9 10060020 10060985 -107801642 + L1MC1 LINE L1 5382 6325 -8 254 312 0 26 chr9 10061094 10061171 -107801456 + L2 LINE L2 3239 3313 0 23 68 0 0 chr9 10061211 10061255 -107801372 + AT_rich Low_complexity Low_complexity 1 44 0 2437 105 14 3 chr9 10061280 10061643 -107800984 + L1PA7 LINE L1 5787 6153 -1 242 313 75 75 chr9 10062325 10062552 -107800075 + L2 LINE L2 3074 3300 -13 395 261 244 6 chr9 10062788 10062968 -107799659 - MIR SINE MIR -10 252 30 533 245 126 13 chr9 10063442 10063601 -107799026 + MER5B DNA MER1_type 2 178 0 22 56 0 0 chr9 10064057 10064093 -107798534 + AT_rich Low_complexity Low_complexity 1 36 0 695 271 65 81 chr9 10064194 10064625 -107798002 - L2 LINE L2 -476 2838 2415 23 33 0 0 chr9 10067406 10067436 -107795191 + AT_rich Low_complexity Low_complexity 1 30 0 6484 161 25 4 chr9 10117567 10119620 -107743007 - L1MA2 LINE L1 -139 7584 5489 1292 199 91 23 chr9 10119620 10119971 -107742656 + THE1C LTR MaLR 1 375 0 4211 128 14 10 chr9 10119979 10120687 -107741940 - L1MA2 LINE L1 -4888 2677 1967 4390 198 50 2 chr9 10120790 10121649 -107740978 - L1MA2 LINE L1 -6153 1412 513 2762 203 18 3 chr9 10121650 10122262 -107740365 - L1 LINE L1 -2133 5432 4812 * 4867 235 47 11 chr9 10122253 10124389 -107738238 - L1 LINE L1 -3338 4227 2005 351 333 71 29 chr9 10124979 10125189 -107737438 + MIR SINE MIR 31 249 -13 1285 61 0 0 chr9 10125757 10125920 -107736707 - L1PA5 LINE L1 -3 6151 5989 1269 32 25 0 chr9 10125920 10126077 -107736550 + L1PA5 LINE L1 5805 5965 -189 545 231 50 0 chr9 10127097 10127218 -107735409 + FLAM_A SINE Alu 1 127 -6 312 45 0 0 chr9 10128463 10128507 -107734120 - L1PA3 LINE L1 0 6155 6112 879 45 0 0 chr9 10128507 10128617 -107734010 + L1P2 LINE L1 5630 5739 -415 345 0 0 0 chr9 10129592 10129631 -107732996 + THE1B LTR MaLR 1 39 -325 8216 108 23 32 chr9 10129631 10130893 -107731734 + THE1A-int LTR MaLR 330 1580 0 2235 121 11 11 chr9 10130893 10131248 -107731379 + THE1A LTR MaLR 1 355 0 647 312 51 4 chr9 10132044 10132278 -107730349 - MIR SINE MIR -1 261 17 281 353 49 0 chr9 10132943 10133065 -107729562 + L2 LINE L2 3143 3270 -2 313 288 23 45 chr9 10133107 10133239 -107729388 + L1MEd LINE L1 1163 1291 -5081 242 306 37 30 chr9 10133572 10133706 -107728921 + L1MEd LINE L1 1577 1711 -4673 208 176 39 20 chr9 10133838 10133889 -107728738 + A-rich Low_complexity Low_complexity 1 52 0 344 337 36 29 chr9 10134232 10134508 -107728119 + L1MEd LINE L1 2453 2730 -3652 444 289 99 44 chr9 10134754 10135334 -107727293 + L1MEd LINE L1 2967 3638 -2744 324 302 65 22 chr9 10135535 10135767 -107726860 + L1MEd LINE L1 3899 4140 -2242 2359 32 0 0 chr9 10135828 10136111 -107726516 - L1PA4 LINE L1 -11 6144 5862 7271 36 0 4 chr9 10136804 10138042 -107724585 - L1PA4 LINE L1 -6 6149 4911 9174 38 1 0 chr9 10138042 10139155 -107723472 + L1PA4 LINE L1 3793 4906 -1240 25 0 0 0 chr9 10139617 10139642 -107722985 + AT_rich Low_complexity Low_complexity 1 25 0 180 152 0 0 chr9 10139885 10139918 -107722709 + CT-rich Low_complexity Low_complexity 1 33 0 267 31 0 0 chr9 10141486 10141518 -107721109 + (TG)n Simple_repeat Simple_repeat 1 32 0 250 309 97 24 chr9 10141672 10141837 -107720790 + MIR SINE MIR 86 262 0 206 287 35 9 chr9 10142039 10142154 -107720473 + (TA)n Simple_repeat Simple_repeat 2 119 0 25 31 0 0 chr9 10143387 10143419 -107719208 + AT_rich Low_complexity Low_complexity 1 32 0 202 349 70 104 chr9 10143935 10144176 -107718451 - L2 LINE L2 -5 3267 3035 21 0 0 0 chr9 10144190 10144211 -107718416 + AT_rich Low_complexity Low_complexity 1 21 0 2003 143 0 6 chr9 10144990 10145304 -107717323 + AluSx SINE Alu 1 312 0 518 115 13 0 chr9 10145994 10146072 -107716555 + MSTA LTR MaLR 350 428 0 370 304 152 13 chr9 10146142 10146300 -107716327 + MER5A DNA MER1_type 10 189 0 28 0 0 0 chr9 10146309 10146337 -107716290 + AT_rich Low_complexity Low_complexity 1 28 0 964 220 11 5 chr9 10146605 10146796 -107715831 - AluJb SINE Alu -17 295 104 2002 270 18 18 chr9 10147179 10147724 -107714903 + MLT1H1 LTR MaLR 1 545 -10 32 26 0 0 chr9 10148348 10148387 -107714240 + AT_rich Low_complexity Low_complexity 1 39 0 354 325 102 0 chr9 10148677 10148834 -107713793 + MIR SINE MIR 90 262 0 2063 136 0 3 chr9 10149161 10149456 -107713171 - AluSx SINE Alu -18 294 1 25 0 0 0 chr9 10150824 10150849 -107711778 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 10152355 10152378 -107710249 + AT_rich Low_complexity Low_complexity 1 23 0 2426 58 3 0 chr9 10152579 10152873 -107709754 + AluY SINE Alu 1 295 -16 312 304 82 26 chr9 10152882 10153076 -107709551 + L1M4 LINE L1 2379 2583 -3563 363 248 183 30 chr9 10153120 10153350 -107709277 + L1M4 LINE L1 2690 2954 -3192 22 35 0 0 chr9 10154810 10154839 -107707788 + AT_rich Low_complexity Low_complexity 1 29 0 520 273 155 9 chr9 10158829 10159168 -107703459 - L1ME1 LINE L1 -201 5965 5587 429 283 121 36 chr9 10159225 10159864 -107702763 - L1ME1 LINE L1 -687 5479 4787 3028 185 77 65 chr9 10159967 10160614 -107702013 - L1MB7 LINE L1 -24 6160 5522 2064 50 0 0 chr9 10160614 10160874 -107701753 + L1PA4 LINE L1 5894 6153 -2 3028 185 77 65 chr9 10160874 10161050 -107701577 - L1MB7 LINE L1 -662 5522 5307 2143 112 16 10 chr9 10161050 10161354 -107701273 - AluSx SINE Alu -6 306 1 3028 185 77 65 chr9 10161354 10161466 -107701161 - L1MB7 LINE L1 -877 5307 5198 23 33 0 0 chr9 10161628 10161658 -107700969 + AT_rich Low_complexity Low_complexity 1 30 0 211 277 0 0 chr9 10161745 10161792 -107700835 + (CATG)n Simple_repeat Simple_repeat 4 50 0 319 347 96 6 chr9 10161792 10161959 -107700668 - L1ME1 LINE L1 -1992 4154 3973 398 280 146 57 chr9 10162044 10162727 -107699900 - L1ME1 LINE L1 -2713 3433 2690 369 306 58 65 chr9 10162771 10162974 -107699653 - L1ME1 LINE L1 -3563 2583 2381 2294 63 0 20 chr9 10162974 10163276 -107699351 - AluY SINE Alu -15 296 1 369 306 58 65 chr9 10163276 10163347 -107699280 - L1ME1 LINE L1 -3765 2381 2311 5290 90 69 5 chr9 10164063 10164828 -107697799 - L1PA6 LINE L1 -5 6149 5336 479 288 64 63 chr9 10165880 10166109 -107696518 + MIR SINE MIR 14 246 -16 450 0 0 0 chr9 10166338 10166388 -107696239 + (CA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr9 10167714 10167738 -107694889 + AT_rich Low_complexity Low_complexity 1 24 0 181 327 106 0 chr9 10168335 10168439 -107694188 + L2 LINE L2 3125 3239 -33 2118 126 0 19 chr9 10170146 10170463 -107692164 - AluSq SINE Alu -2 311 1 257 336 19 10 chr9 10173934 10174038 -107688589 + MIR SINE MIR 49 153 -109 1320 213 48 78 chr9 10174056 10174456 -107688171 + MLT1C LTR MaLR 3 390 0 210 260 182 0 chr9 10174456 10174533 -107688094 + MIR SINE MIR 159 249 -13 349 287 85 37 chr9 10174936 10175100 -107687527 - MIR3 SINE MIR -5 203 32 215 372 74 65 chr9 10176437 10176668 -107685959 + L2 LINE L2 2948 3180 -92 259 250 98 11 chr9 10177010 10177102 -107685525 + MIR SINE MIR 58 157 -105 432 337 28 6 chr9 10177572 10177753 -107684874 + MER5A DNA MER1_type 1 185 -4 30 100 0 0 chr9 10178408 10178508 -107684119 + AT_rich Low_complexity Low_complexity 1 100 0 353 312 80 76 chr9 10178991 10179165 -107683462 - MIR SINE MIR -10 252 75 961 161 33 0 chr9 10179165 10179345 -107683282 + L1MB5 LINE L1 5981 6166 -8 353 312 80 76 chr9 10179345 10179420 -107683207 - MIR SINE MIR -187 75 2 2197 119 0 3 chr9 10182162 10182465 -107680162 - AluSg SINE Alu -8 302 1 393 22 0 0 chr9 10183205 10183251 -107679376 + (CA)n Simple_repeat Simple_repeat 1 46 0 4542 193 48 22 chr9 10183288 10184341 -107678286 + L1MD2 LINE L1 5280 6359 0 21 0 0 0 chr9 10184493 10184514 -107678113 + AT_rich Low_complexity Low_complexity 1 21 0 514 164 55 18 chr9 10184527 10184637 -107677990 - MLT1B LTR MaLR -2 388 275 373 176 54 0 chr9 10184856 10184930 -107677697 - MLT1B-int LTR MaLR -488 883 806 * 1736 226 29 13 chr9 10184926 10185306 -107677321 - MLT1B-int LTR MaLR -703 668 283 438 243 36 9 chr9 10185311 10185422 -107677205 - MLT1B-int LTR MaLR -1256 115 2 1147 214 19 62 chr9 10185423 10185745 -107676882 - MLT1B LTR MaLR 0 390 83 370 184 56 56 chr9 10185778 10185903 -107676724 - L1ME4a LINE L1 -30 6091 5967 21 0 0 0 chr9 10186440 10186461 -107676166 + AT_rich Low_complexity Low_complexity 1 21 0 244 376 78 45 chr9 10186534 10186776 -107675851 + L2 LINE L2 2987 3236 -36 283 325 0 12 chr9 10187329 10187409 -107675218 - MIR SINE MIR -155 107 29 2357 71 0 7 chr9 10188255 10188563 -107674064 - AluY SINE Alu -5 306 1 192 352 111 14 chr9 10188565 10188781 -107673846 - L3b LINE CR1 -224 1359 1123 26 0 0 0 chr9 10189380 10189406 -107673221 + AT_rich Low_complexity Low_complexity 1 26 0 395 181 48 0 chr9 10190864 10190947 -107671680 + MIR SINE MIR 174 260 -2 27 29 0 0 chr9 10190968 10191002 -107671625 + AT_rich Low_complexity Low_complexity 1 34 0 201 268 0 0 chr9 10191702 10191758 -107670869 + A-rich Low_complexity Low_complexity 1 56 0 2476 65 0 3 chr9 10191919 10192229 -107670398 - AluY SINE Alu -2 309 1 5397 57 3 0 chr9 10192246 10192918 -107669709 - L1PA7 LINE L1 -33 6121 5448 2153 161 13 15 chr9 10194602 10194993 -107667634 + MLT1B LTR MaLR 1 390 0 598 291 65 57 chr9 10195343 10195694 -107666933 + L1ME4a LINE L1 5500 5853 -268 293 333 56 9 chr9 10197956 10198064 -107664563 + MIR3 SINE MIR 42 154 -54 2348 59 3 41 chr9 10198265 10198585 -107664042 + AluY SINE Alu 1 308 -3 434 367 56 53 chr9 10198726 10199137 -107663490 + L2 LINE L2 2857 3268 -4 288 77 0 0 chr9 10199921 10199960 -107662667 + (CA)n Simple_repeat Simple_repeat 1 39 0 1556 205 3 10 chr9 10200018 10200320 -107662307 + AluJb SINE Alu 1 300 -12 994 354 26 21 chr9 10200644 10201226 -107661401 + L1PA13 LINE L1 1 585 -6202 4333 163 55 66 chr9 10201413 10203001 -107659626 + L1PA16 LINE L1 4588 6157 -9 3026 221 59 14 chr9 10202976 10203946 -107658681 + L1MC3 LINE L1 5254 7764 -21 * 25 51 0 0 chr9 10203955 10203994 -107658633 + AT_rich Low_complexity Low_complexity 1 39 0 2382 71 3 0 chr9 10204412 10204709 -107657918 - AluY SINE Alu -13 298 1 25 0 0 0 chr9 10206438 10206463 -107656164 + AT_rich Low_complexity Low_complexity 1 25 0 191 168 47 19 chr9 10207380 10207487 -107655140 + (TA)n Simple_repeat Simple_repeat 1 110 0 183 129 0 0 chr9 10207486 10207517 -107655110 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 2143 264 68 13 chr9 10207795 10208510 -107654117 + L1MC4a LINE L1 7052 7806 -2 198 156 22 44 chr9 10208776 10208821 -107653806 - L2 LINE L2 -8 3305 3262 428 88 0 0 chr9 10209231 10209288 -107653339 - L1P1 LINE L1 -524 5631 5575 962 43 0 0 chr9 10209288 10209401 -107653226 + L1PA5 LINE L1 6034 6150 -4 25 97 0 9 chr9 10209445 10209482 -107653145 + AT_rich Low_complexity Low_complexity 1 37 -75 1686 147 31 20 chr9 10209482 10209775 -107652852 + AluSg SINE Alu 1 296 -14 25 97 0 9 chr9 10209775 10209850 -107652777 + AT_rich Low_complexity Low_complexity 37 112 0 2017 122 0 7 chr9 10210386 10210705 -107651922 - AluSx SINE Alu 0 312 1 2407 70 0 3 chr9 10210891 10211203 -107651424 + AluY SINE Alu 1 311 0 2396 66 20 0 chr9 10212138 10212443 -107650184 + AluY SINE Alu 1 311 0 191 246 70 18 chr9 10213419 10213476 -107649151 + L2 LINE L2 3254 3313 0 231 233 0 0 chr9 10216084 10216127 -107646500 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 182 381 103 8 chr9 10216612 10216738 -107645889 - L2 LINE L2 -8 3264 3127 285 244 23 0 chr9 10216762 10216848 -107645779 + L1MC4 LINE L1 6615 6702 -1340 345 377 0 0 chr9 10217250 10217388 -107645239 - MIR SINE MIR -56 206 69 265 302 23 54 chr9 10217437 10217566 -107645061 - L2 LINE L2 -592 2722 2598 2649 268 72 23 chr9 10217601 10218499 -107644128 + MER69 DNA AcHobo 1 942 -1584 446 240 126 29 chr9 10218490 10218736 -107643891 + MER69 DNA AcHobo 2156 2425 -101 * 294 347 36 32 chr9 10218960 10219208 -107643419 - L2 LINE L2 -933 2381 2133 556 232 7 7 chr9 10219423 10219561 -107643066 - L1MA10 LINE L1 -4 6330 6193 198 0 0 0 chr9 10219862 10219884 -107642743 + (T)n Simple_repeat Simple_repeat 1 22 0 39 50 0 0 chr9 10219926 10219986 -107642641 + AT_rich Low_complexity Low_complexity 1 60 0 1946 146 0 7 chr9 10220182 10220490 -107642137 + AluSq SINE Alu 1 306 -7 25 0 0 0 chr9 10220759 10220784 -107641843 + AT_rich Low_complexity Low_complexity 1 25 0 1119 240 94 36 chr9 10220808 10221270 -107641357 - MER39 LTR ERV1 0 707 1 24 0 0 0 chr9 10221744 10221768 -107640859 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 10222656 10222677 -107639950 + AT_rich Low_complexity Low_complexity 1 21 0 850 188 19 0 chr9 10222805 10222965 -107639662 + FRAM SINE Alu 1 159 -17 195 337 208 0 chr9 10223228 10223329 -107639298 + L2 LINE L2 3151 3272 0 21 0 0 0 chr9 10223656 10223677 -107638950 + AT_rich Low_complexity Low_complexity 1 21 0 341 254 35 70 chr9 10225242 10225356 -107637271 + L2 LINE L2 3200 3309 -4 21 36 0 0 chr9 10226038 10226066 -107636561 + AT_rich Low_complexity Low_complexity 1 28 0 233 204 0 0 chr9 10227191 10227235 -107635392 + L2 LINE L2 3262 3305 -8 26 30 0 0 chr9 10227422 10227455 -107635172 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 10227562 10227583 -107635044 + AT_rich Low_complexity Low_complexity 1 21 0 266 272 196 58 chr9 10227712 10227936 -107634691 + MIR SINE MIR 6 260 -2 925 171 48 16 chr9 10228756 10228943 -107633684 + MER50 LTR ERV1 1 193 -541 510 260 73 29 chr9 10229136 10229340 -107633287 + LTR7 LTR ERV1 238 450 0 * 2737 181 39 8 chr9 10229340 10229828 -107632799 + MER50 LTR ERV1 182 685 -49 2901 154 16 8 chr9 10230150 10230657 -107631970 + MER75 DNA T2_type 4 514 0 2429 213 73 63 chr9 10230811 10231404 -107631223 + LTR48 LTR ERV1 1 604 -183 1270 226 3 37 chr9 10231404 10231700 -107630927 - AluJo SINE Alu -26 286 1 2429 213 73 63 chr9 10231700 10231863 -107630764 + LTR48 LTR ERV1 604 764 -23 2195 94 10 0 chr9 10231879 10232177 -107630450 - AluY SINE Alu -9 302 2 353 206 0 0 chr9 10232559 10232622 -107630005 + Tigger2 DNA MER2_type 7 69 -2649 * 1145 160 166 64 chr9 10232611 10232924 -107629703 + Tigger2 DNA MER2_type 2273 2617 -101 * 7598 139 11 99 chr9 10232913 10233578 -107629049 + Tigger1 DNA MER2_type 975 1697 -721 748 181 0 23 chr9 10233578 10233711 -107628916 + AluJo/FLAM SINE Alu 1 130 -172 424 169 0 0 chr9 10233711 10233776 -107628851 + AluSp SINE Alu 134 198 -115 7598 139 11 99 chr9 10233776 10234047 -107628580 + Tigger1 DNA MER2_type 1696 1989 -429 2240 101 0 0 chr9 10234047 10234345 -107628282 + AluY SINE Alu 1 298 -13 7598 139 11 99 chr9 10234345 10234926 -107627701 + Tigger1 DNA MER2_type 1989 2418 0 8423 208 72 41 chr9 10234934 10237419 -107625208 + L1MA9 LINE L1 2125 4684 -1462 1413 142 164 0 chr9 10237423 10237655 -107624972 - AluJb SINE Alu -10 302 33 2332 209 13 20 chr9 10237675 10238220 -107624407 + L1MA9 LINE L1 4682 5222 -924 1431 149 33 78 chr9 10238239 10238574 -107624053 + L1MA9 LINE L1 5865 6184 -128 452 123 14 0 chr9 10238583 10238656 -107623971 - MER41E LTR ERV1 -112 400 327 424 195 16 24 chr9 10238668 10238791 -107623836 + L1MA9 LINE L1 6190 6311 -1 25 99 0 0 chr9 10239107 10239188 -107623439 + AT_rich Low_complexity Low_complexity 1 81 0 24 32 0 0 chr9 10239776 10239807 -107622820 + AT_rich Low_complexity Low_complexity 1 31 0 2163 123 0 0 chr9 10241259 10241559 -107621068 + AluSg SINE Alu 1 300 -10 5119 180 59 6 chr9 10242129 10243908 -107618719 - L1PA16 LINE L1 -6 6160 4280 387 337 76 6 chr9 10244263 10244435 -107618192 - MIR SINE MIR -34 228 45 194 81 27 0 chr9 10244537 10244574 -107618053 + (TA)n Simple_repeat Simple_repeat 2 39 0 2052 133 0 0 chr9 10244751 10245036 -107617591 + AluSc SINE Alu 1 285 -24 360 85 102 0 chr9 10245036 10245154 -107617473 + (TA)n Simple_repeat Simple_repeat 1 130 0 1262 199 86 12 chr9 10245328 10245427 -107617200 + MER46B DNA MER2_type 1 91 -2640 4319 164 20 12 chr9 10245427 10245739 -107616888 + L1MA4 LINE L1 5484 5792 -508 2252 158 62 10 chr9 10245739 10246143 -107616484 - MSTA LTR MaLR -3 425 1 4319 164 20 12 chr9 10246143 10246635 -107615992 + L1MA4 LINE L1 5792 6294 -6 1262 199 86 12 chr9 10246635 10246871 -107615756 + MER46B DNA MER2_type 91 236 0 340 263 79 20 chr9 10247213 10247365 -107615262 + MER113 DNA MER1_type? 276 436 -85 374 301 21 0 chr9 10247526 10247643 -107614984 + MIR SINE MIR 11 130 -78 748 221 17 30 chr9 10247646 10247877 -107614750 - L1MC5 LINE L1 -731 7230 7003 647 197 6 0 chr9 10247928 10248106 -107614521 + GA-rich Low_complexity Low_complexity 2 180 0 572 321 71 64 chr9 10248331 10248913 -107613714 - L1MCa LINE L1 -834 1050 17 230 106 0 85 chr9 10249311 10249342 -107613285 - L1PA4 LINE L1 -1929 4217 4190 9321 42 8 0 chr9 10249342 10251266 -107611361 + L1PA4 LINE L1 4218 6149 -6 230 106 0 85 chr9 10251266 10251281 -107611346 - L1P LINE L1 -1956 4190 4175 187 200 0 0 chr9 10252529 10252564 -107610063 - L2 LINE L2 -4 3268 3234 42 71 0 0 chr9 10252683 10252767 -107609860 + AT_rich Low_complexity Low_complexity 1 84 0 22 70 0 0 chr9 10252790 10252833 -107609794 + AT_rich Low_complexity Low_complexity 1 43 0 386 298 119 70 chr9 10255014 10255444 -107607183 + MLT1L LTR MaLR 1 451 -164 4673 47 6 9 chr9 10255774 10256759 -107605868 - MER11C LTR ERVK 0 1071 1 1050 338 66 33 chr9 10256843 10257511 -107605116 + ERVL LTR ERVL 1949 2638 -3126 1072 350 65 47 chr9 10258073 10259055 -107603572 + ERVL LTR ERVL 3286 4285 -1479 542 268 191 0 chr9 10259197 10259365 -107603262 + MIR SINE MIR 41 240 -22 7494 30 6 5 chr9 10260292 10261714 -107600913 - L1PA3 LINE L1 -3 6152 4730 5080 36 2 0 chr9 10261714 10262330 -107600297 + L1PA3 LINE L1 4131 4747 -1399 1460 154 143 0 chr9 10262548 10262820 -107599807 - AluSx SINE Alu -1 311 1 1445 67 0 0 chr9 10263133 10263313 -107599314 + AluSc SINE Alu 130 309 0 397 324 44 9 chr9 10263815 10264044 -107598583 + MIR SINE MIR 28 262 0 322 346 50 39 chr9 10264079 10264261 -107598366 - MIR3 SINE MIR -6 202 19 216 0 0 0 chr9 10264820 10264844 -107597783 + (T)n Simple_repeat Simple_repeat 1 24 0 803 274 43 10 chr9 10265508 10265716 -107596911 + MER58A DNA MER1_type 1 215 -9 281 294 161 7 chr9 10265952 10266095 -107596532 + MIR SINE MIR 86 250 -12 853 155 37 0 chr9 10266837 10266998 -107595629 + L1MA9 LINE L1 5863 6029 -283 383 121 0 91 chr9 10267554 10267752 -107594875 + (TA)n Simple_repeat Simple_repeat 1 180 0 328 311 192 6 chr9 10270983 10271150 -107591477 - MIR SINE MIR -49 213 16 1436 169 58 38 chr9 10273074 10273418 -107589209 - L1MA8 LINE L1 -4 6287 5937 525 230 109 30 chr9 10273512 10273677 -107588950 + MIR SINE MIR 68 245 -17 885 205 0 0 chr9 10274152 10274303 -107588324 + AluJb SINE Alu 134 284 -28 281 361 71 0 chr9 10275209 10275378 -107587249 - MIR SINE MIR 0 262 82 1218 245 30 18 chr9 10275650 10275985 -107586642 - MER58B DNA MER1_type -1 340 2 2065 119 0 29 chr9 10276061 10276372 -107586255 - AluSc SINE Alu -2 307 6 1427 147 29 21 chr9 10276379 10276658 -107585969 - L1MA6 LINE L1 -2 6298 6018 1378 209 94 115 chr9 10278032 10278967 -107583660 - LTR1B LTR ERV1 -4 1016 1 22 0 0 0 chr9 10280082 10280104 -107582523 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 10280145 10280166 -107582461 + AT_rich Low_complexity Low_complexity 1 21 0 270 285 65 24 chr9 10281197 10281320 -107581307 - MIR3 SINE MIR -5 203 76 246 316 32 11 chr9 10281352 10281447 -107581180 - MIR3 SINE MIR -29 179 83 1584 168 45 45 chr9 10281460 10281834 -107580793 + THE1C LTR MaLR 1 374 -1 333 251 18 105 chr9 10281848 10282019 -107580608 + MER117 DNA MER1_type 41 196 -1 2263 78 3 7 chr9 10283803 10284110 -107578517 - AluSc SINE Alu -3 306 1 330 332 56 39 chr9 10284471 10284703 -107577924 - L1MC/D LINE L1 -2062 5746 5511 229 294 167 49 chr9 10285703 10285948 -107576679 - L2 LINE L2 -676 2638 2365 250 267 35 23 chr9 10286036 10286122 -107576505 + MLT1L LTR MaLR 120 206 -409 2255 101 0 16 chr9 10286544 10286861 -107575766 + AluSx SINE Alu 1 312 0 1672 181 20 0 chr9 10287031 10287330 -107575297 - AluJo SINE Alu -3 309 5 26 64 0 0 chr9 10287419 10287466 -107575161 + AT_rich Low_complexity Low_complexity 1 47 0 2235 159 51 19 chr9 10287750 10288165 -107574462 + MSTC LTR MaLR 1 428 0 21 57 0 0 chr9 10289272 10289307 -107573320 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr9 10290806 10290830 -107571797 + AT_rich Low_complexity Low_complexity 1 24 0 343 348 51 41 chr9 10290982 10291509 -107571118 + HAL1b LINE L1 303 590 -758 620 261 30 53 chr9 10291632 10291896 -107570731 + L1MC5 LINE L1 6976 7233 -728 281 277 61 48 chr9 10292092 10292323 -107570304 + L1MC5 LINE L1 7262 7495 -466 244 311 68 19 chr9 10292597 10292758 -107569869 + L1MC5 LINE L1 7749 7917 -44 397 325 0 26 chr9 10293070 10293298 -107569329 + L1MC4 LINE L1 7693 7914 -128 312 305 16 8 chr9 10294427 10294555 -107568072 - MIR SINE MIR 0 262 134 205 321 0 18 chr9 10294713 10294769 -107567858 + MIR SINE MIR 7 61 -201 281 221 35 122 chr9 10345338 10345417 -107517210 + MER106B DNA MER1_type 903 961 -98 2084 125 3 3 chr9 10345417 10345729 -107516898 + AluSx SINE Alu 1 312 0 281 221 35 122 chr9 10345729 10345821 -107516806 + MER106B DNA MER1_type 961 1059 0 316 264 0 64 chr9 10345829 10345939 -107516688 + L1ME3A LINE L1 5265 5367 -2441 330 354 59 39 chr9 10346008 10346364 -107516263 + L1ME3A LINE L1 5513 5875 -295 2335 69 0 20 chr9 10346445 10346750 -107515877 - AluY SINE Alu -12 299 1 334 248 57 95 chr9 10346872 10347082 -107515545 + L2 LINE L2 3102 3303 -10 339 65 0 0 chr9 10347736 10347782 -107514845 + (TG)n Simple_repeat Simple_repeat 2 47 0 717 166 14 7 chr9 10347809 10347948 -107514679 - L1PB2 LINE L1 0 6151 6012 608 243 143 11 chr9 10347949 10348138 -107514489 - MLT2D LTR ERVL -197 217 4 897 325 122 31 chr9 10348146 10348722 -107513905 - ERVL LTR ERVL -3336 2428 1801 268 332 57 49 chr9 10349380 10349645 -107512982 - ERVL LTR ERVL -4657 1107 841 319 20 20 20 chr9 10349898 10349947 -107512680 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 225 291 0 0 chr9 10350550 10350605 -107512022 + CT-rich Low_complexity Low_complexity 3 57 0 330 257 0 50 chr9 10351957 10352058 -107510569 + MIR SINE MIR 56 151 -111 271 158 463 0 chr9 10353493 10353575 -107509052 + L1MA6 LINE L1 6173 6293 -4 180 191 0 24 chr9 10353844 10353886 -107508741 - L2 LINE L2 -969 2345 2305 419 103 82 0 chr9 10355618 10355715 -107506912 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 349 321 83 37 chr9 10357249 10357467 -107505160 + MIR SINE MIR 32 259 -3 233 313 53 30 chr9 10358541 10358672 -107503955 - MIR SINE MIR -114 148 15 464 262 119 12 chr9 10358683 10358851 -107503776 + MIR SINE MIR 5 190 -72 476 319 68 16 chr9 10359070 10359261 -107503366 - MIR SINE MIR -10 252 52 26 0 0 0 chr9 10359929 10359955 -107502672 + AT_rich Low_complexity Low_complexity 1 26 0 25 51 0 0 chr9 10360478 10360517 -107502110 + AT_rich Low_complexity Low_complexity 1 39 0 1968 213 78 23 chr9 10361046 10361520 -107501107 - MLT1D LTR MaLR 0 505 6 2274 103 3 0 chr9 10361737 10362037 -107500590 + AluSp SINE Alu 1 301 -12 2151 115 7 0 chr9 10362164 10362460 -107500167 + AluSq SINE Alu 1 298 -15 1454 247 100 45 chr9 10362840 10363302 -107499325 - HUERS-P2 LTR ERV1 -2530 558 72 1932 208 99 87 chr9 10363403 10364219 -107498408 - LTR1B LTR ERV1 0 826 1 2348 53 4 0 chr9 10365389 10365713 -107496914 - AluY SINE Alu 0 325 1 21 36 0 0 chr9 10366409 10366437 -107496190 + AT_rich Low_complexity Low_complexity 1 28 0 249 389 13 6 chr9 10367071 10367228 -107495399 + L1MC3 LINE L1 558 715 -5404 337 284 27 34 chr9 10367426 10367574 -107495053 + L1MC3 LINE L1 3596 3742 -2387 * 6531 205 62 42 chr9 10367566 10368139 -107494488 + L1MC3 LINE L1 4607 3794 -2335 2176 104 0 3 chr9 10368139 10368428 -107494199 + AluSq SINE Alu 1 288 -25 6531 205 62 42 chr9 10368428 10370054 -107492573 + L1MC3 LINE L1 3793 5386 -743 2464 4 0 7 chr9 10370164 10370441 -107492186 - AluYa5 SINE Alu -36 275 1 7422 32 1 1 chr9 10370509 10371529 -107491098 + L1PA4 LINE L1 5131 6150 -5 185 284 37 62 chr9 10371531 10371612 -107491015 + MIR SINE MIR 152 230 -32 21 0 0 0 chr9 10371702 10371723 -107490904 + AT_rich Low_complexity Low_complexity 1 21 0 1731 105 8 4 chr9 10371889 10372136 -107490491 - AluSc SINE Alu -4 305 58 226 291 115 61 chr9 10372612 10372777 -107489850 + MLT1L LTR MaLR 369 542 -73 201 189 0 0 chr9 10372865 10372902 -107489725 + L2 LINE L2 3272 3308 -5 394 60 0 0 chr9 10372961 10373011 -107489616 - MADE1 DNA Mariner 0 80 31 22 0 0 0 chr9 10373502 10373524 -107489103 + AT_rich Low_complexity Low_complexity 1 22 0 7710 19 0 0 chr9 10375106 10376255 -107486372 - L1PA4 LINE L1 -8 6147 4999 1139 297 15 10 chr9 10376255 10376663 -107485964 - L1 LINE L1 -3335 2811 2402 273 224 90 0 chr9 10377196 10377263 -107485364 + LTR33 LTR ERVL 1 73 -448 291 232 30 71 chr9 10377597 10377696 -107484931 - L3 LINE CR1 -113 1464 1370 3231 228 27 28 chr9 10378102 10378995 -107483632 + L1ME4a LINE L1 530 1421 -5121 2203 102 3 13 chr9 10378998 10379301 -107483326 - AluSp SINE Alu -13 300 1 2127 187 28 37 chr9 10379319 10379778 -107482849 + LTR9B LTR ERV1 7 461 -183 460 50 0 0 chr9 10379781 10379841 -107482786 + L1PA6 LINE L1 6095 6154 0 3270 197 39 43 chr9 10379950 10380670 -107481957 + HUERS-P3 LTR ERV1 6243 6959 -1960 879 143 22 18 chr9 10380688 10380915 -107481712 + HUERS-P3 LTR ERV1 2383 4320 -560 1215 199 3 21 chr9 10381145 10381443 -107481184 + HUERS-P3 LTR ERV1 7176 8918 0 2998 165 63 31 chr9 10381443 10382061 -107480566 + LTR9B LTR ERV1 7 644 0 1664 269 55 68 chr9 10382065 10383183 -107479444 + L1ME4a LINE L1 1422 2688 -4137 195 69 0 0 chr9 10383183 10383212 -107479415 + (TA)n Simple_repeat Simple_repeat 2 30 0 1664 269 55 68 chr9 10383212 10383421 -107479206 + L1ME4a LINE L1 2688 2898 -3927 336 284 101 39 chr9 10384168 10384506 -107478121 + L1ME4a LINE L1 6053 6411 -208 313 364 43 48 chr9 10385129 10385360 -107477267 - L3 LINE CR1 -995 582 353 242 368 69 7 chr9 10385518 10385662 -107476965 - MIR SINE MIR -74 188 36 26 0 0 0 chr9 10386221 10386247 -107476380 + AT_rich Low_complexity Low_complexity 1 26 0 28 79 0 0 chr9 10386883 10386946 -107475681 + AT_rich Low_complexity Low_complexity 1 63 0 366 295 111 53 chr9 10386994 10387238 -107475389 - LTR41 LTR ERVL -6 767 510 407 263 66 7 chr9 10387689 10387826 -107474801 - LTR41 LTR ERVL -588 185 41 23 54 0 0 chr9 10388451 10388488 -107474139 + AT_rich Low_complexity Low_complexity 1 37 0 29 0 0 0 chr9 10388573 10388602 -107474025 + AT_rich Low_complexity Low_complexity 1 29 0 467 280 127 25 chr9 10388883 10389222 -107473405 + L1ME4a LINE L1 5467 5840 -281 280 304 47 12 chr9 10389283 10389454 -107473173 + L1ME4a LINE L1 5944 6120 -1 641 167 80 0 chr9 10389562 10389712 -107472915 + L1MB1 LINE L1 6007 6168 0 1721 124 124 24 chr9 10390089 10390419 -107472208 - THE1B LTR MaLR 0 364 2 28 48 0 0 chr9 10393268 10393310 -107469317 + AT_rich Low_complexity Low_complexity 1 42 0 1905 147 77 18 chr9 10393585 10393925 -107468702 + THE1B LTR MaLR 3 362 -2 11018 94 40 0 chr9 10393927 10395447 -107467180 + THE1B-int LTR MaLR 1 1580 0 1926 130 78 26 chr9 10395448 10395793 -107466834 + THE1B LTR MaLR 2 364 0 263 340 137 26 chr9 10395832 10396211 -107466416 - L2 LINE L2 -826 2488 2068 2534 81 74 15 chr9 10396840 10397212 -107465415 + MLT2A1 LTR ERVL 6 355 -89 387 0 0 0 chr9 10397212 10397255 -107465372 + (TA)n Simple_repeat Simple_repeat 2 44 0 348 24 0 0 chr9 10397254 10397295 -107465332 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 2534 81 74 15 chr9 10397255 10397316 -107465311 + MLT2A1 LTR ERVL 355 422 -22 366 307 92 31 chr9 10397366 10397529 -107465098 + L3 LINE CR1 375 547 -1030 723 161 0 0 chr9 10398056 10398186 -107464441 + L1 LINE L1 4529 4658 -1488 5473 94 47 5 chr9 10398454 10399627 -107463000 - L1PA13 LINE L1 0 6163 4999 25 0 0 0 chr9 10400189 10400214 -107462413 + AT_rich Low_complexity Low_complexity 1 25 0 390 74 0 0 chr9 10400525 10400579 -107462048 + (CA)n Simple_repeat Simple_repeat 1 54 0 2047 97 4 0 chr9 10400612 10400914 -107461713 - AluSc SINE Alu 0 315 13 1466 196 3 25 chr9 10400916 10401201 -107461426 - AluJb SINE Alu -11 301 23 1822 182 100 5 chr9 10401239 10401618 -107461009 + MSTA LTR MaLR 2 416 -12 304 344 114 31 chr9 10402026 10402378 -107460249 + L2 LINE L2 1869 2249 -1065 582 291 98 0 chr9 10402494 10402697 -107459930 - MIR SINE MIR 0 262 40 216 252 54 117 chr9 10403647 10403758 -107458869 + MIR3 SINE MIR 74 177 -31 262 370 68 25 chr9 10406995 10407157 -107455470 + MIR3 SINE MIR 19 187 -21 455 335 24 0 chr9 10408610 10408774 -107453853 - MIR SINE MIR -46 216 49 23 0 0 0 chr9 10409271 10409294 -107453333 + AT_rich Low_complexity Low_complexity 1 23 0 266 298 19 39 chr9 10411227 10411331 -107451296 + MIR SINE MIR 48 149 -113 357 62 0 0 chr9 10411342 10411390 -107451237 + (TG)n Simple_repeat Simple_repeat 1 48 0 276 333 67 22 chr9 10411783 10411918 -107450709 + MIR SINE MIR 79 219 -43 248 271 0 0 chr9 10413218 10413277 -107449350 - MIR3 SINE MIR -12 196 138 335 77 0 19 chr9 10413429 10413481 -107449146 + (GAAA)n Simple_repeat Simple_repeat 2 52 0 21 36 0 0 chr9 10413742 10413770 -107448857 + AT_rich Low_complexity Low_complexity 1 28 0 342 323 90 18 chr9 10413969 10414136 -107448491 + L2 LINE L2 3130 3308 -5 2266 97 3 6 chr9 10414308 10414619 -107448008 + AluSg SINE Alu 1 310 0 1999 33 0 0 chr9 10415482 10415724 -107446903 - L1PA4 LINE L1 -3 6152 5911 1354 170 5 0 chr9 10415975 10416198 -107446429 - AluJb SINE Alu -13 299 76 401 252 191 62 chr9 10416534 10416744 -107445883 - MIR SINE MIR -6 256 20 22 35 0 0 chr9 10416960 10416989 -107445638 + AT_rich Low_complexity Low_complexity 1 29 0 1908 145 7 0 chr9 10417798 10418087 -107444540 - AluSx SINE Alu -20 292 2 1908 200 130 19 chr9 10418439 10418859 -107443768 + MER67D LTR ERV1 3 480 -34 1434 214 26 45 chr9 10418859 10419012 -107443615 + MLT1A2 LTR MaLR 4 158 -216 204 40 0 0 chr9 10419012 10419037 -107443590 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 1434 214 26 45 chr9 10419037 10419261 -107443366 + MLT1A2 LTR MaLR 158 374 0 1908 200 130 19 chr9 10419261 10419301 -107443326 + MER67D LTR ERV1 480 514 0 644 325 42 17 chr9 10419371 10419611 -107443016 - MIR SINE MIR -4 258 13 249 174 61 0 chr9 10419828 10419926 -107442701 + (TA)n Simple_repeat Simple_repeat 1 104 0 2094 133 0 0 chr9 10420070 10420364 -107442263 + AluSg SINE Alu 1 294 -16 231 385 56 7 chr9 10421052 10421195 -107441432 + MIR3 SINE MIR 3 152 -56 358 264 62 0 chr9 10421300 10421444 -107441183 - LTR33A LTR ERVL -2 521 369 1939 121 10 3 chr9 10421604 10421901 -107440726 + AluSg SINE Alu 12 310 0 1457 188 84 10 chr9 10422225 10422581 -107440046 + LTR56 LTR ERV1 86 467 0 23 0 0 0 chr9 10423018 10423041 -107439586 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr9 10423791 10423824 -107438803 + AT_rich Low_complexity Low_complexity 1 33 0 1216 92 8 8 chr9 10424806 10425055 -107437572 + (TTTC)n Simple_repeat Simple_repeat 1 249 0 849 221 16 21 chr9 10425871 10426061 -107436566 + MER5A DNA MER1_type 1 189 0 688 215 116 45 chr9 10426073 10426352 -107436275 - LTR37A LTR ERV1 0 426 121 2044 142 0 3 chr9 10426352 10426663 -107435964 + AluSq SINE Alu 1 310 -3 688 215 116 45 chr9 10426663 10426694 -107435933 - LTR37A LTR ERV1 -305 121 94 180 380 28 19 chr9 10427488 10427596 -107435031 + MIR SINE MIR 42 150 -58 194 0 0 37 chr9 10427858 10427885 -107434742 + (CAAAAA)n Simple_repeat Simple_repeat 2 27 0 525 198 0 19 chr9 10428743 10428849 -107433778 + L1PA16 LINE L1 6054 6157 -9 21 0 0 0 chr9 10428849 10428870 -107433757 + AT_rich Low_complexity Low_complexity 1 21 0 477 0 0 0 chr9 10429171 10429224 -107433403 + (GAAA)n Simple_repeat Simple_repeat 4 56 0 27 0 0 0 chr9 10430444 10430471 -107432156 + AT_rich Low_complexity Low_complexity 1 27 0 186 259 19 0 chr9 10431469 10431523 -107431104 - MIR SINE MIR -104 158 104 390 228 96 101 chr9 10431569 10431788 -107430839 - MIR SINE MIR -42 220 3 828 223 88 0 chr9 10431831 10432024 -107430603 + MER63A DNA MER1_type 1 210 0 184 298 20 126 chr9 10432196 10432347 -107430280 + MIR3 SINE MIR 10 144 -64 23 68 0 0 chr9 10433878 10433922 -107428705 + AT_rich Low_complexity Low_complexity 1 44 0 180 329 14 0 chr9 10434015 10434088 -107428539 - MER5A DNA MER1_type -45 144 71 2393 246 35 35 chr9 10434913 10435778 -107426849 + L1MC3 LINE L1 4246 5110 -1036 24 53 0 0 chr9 10435938 10435976 -107426651 + AT_rich Low_complexity Low_complexity 1 38 0 607 220 181 6 chr9 10436031 10436325 -107426302 + L1MC3 LINE L1 5125 5487 -838 180 0 0 0 chr9 10436325 10436345 -107426282 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 607 220 181 6 chr9 10436345 10436378 -107426249 + L1MC3 LINE L1 5487 5513 -812 646 160 0 0 chr9 10436378 10436478 -107426149 - LTR12 LTR ERV1 0 714 615 300 273 10 0 chr9 10436480 10436579 -107426048 - LTR30 LTR ERV1 -79 643 544 687 155 38 113 chr9 10436579 10436792 -107425835 - LTR12 LTR ERV1 -437 277 81 1802 183 158 7 chr9 10436792 10437240 -107425387 + L1MC3 LINE L1 5564 6079 -1706 949 192 20 15 chr9 10437246 10437444 -107425183 + L1MC3 LINE L1 6169 6367 -1418 620 189 45 0 chr9 10437443 10437575 -107425052 + L1MC3 LINE L1 7481 7618 -167 * 37 62 0 0 chr9 10439484 10439549 -107423078 + AT_rich Low_complexity Low_complexity 1 65 0 422 235 10 10 chr9 10439578 10439676 -107422951 + L2 LINE L2 3216 3313 0 242 351 45 22 chr9 10441370 10441504 -107421123 + MER5A DNA MER1_type 7 143 -46 2230 118 21 3 chr9 10441526 10441866 -107420761 - L1PA15 LINE L1 -6 6159 5814 469 283 135 80 chr9 10442222 10442260 -107420367 - L3 LINE CR1 -3 1574 1540 2111 127 0 16 chr9 10442260 10442575 -107420052 + AluSg SINE Alu 1 310 0 469 283 135 80 chr9 10442575 10442988 -107419639 - L3 LINE CR1 -37 1540 1098 1500 203 58 29 chr9 10445385 10445742 -107416885 + MLT1A1 LTR MaLR 6 428 0 435 19 0 0 chr9 10446842 10446894 -107415733 + (CA)n Simple_repeat Simple_repeat 2 53 0 1403 185 129 16 chr9 10447687 10447990 -107414637 - MER1B DNA MER1_type 0 337 1 248 314 26 103 chr9 10447999 10448155 -107414472 + MIR SINE MIR 48 191 -71 553 312 83 5 chr9 10448658 10448863 -107413764 - MER58A DNA MER1_type -2 222 2 185 156 0 22 chr9 10449698 10449743 -107412884 + (CA)n Simple_repeat Simple_repeat 1 44 0 245 363 41 29 chr9 10452682 10452853 -107409774 + MIR SINE MIR 86 258 -4 399 196 83 43 chr9 10452854 10452991 -107409636 + L1MB7 LINE L1 6018 6137 -43 1021 233 16 12 chr9 10452991 10453269 -107409358 + AluJo SINE Alu 38 316 0 395 214 111 8 chr9 10454740 10454866 -107407761 + MER104 DNA Tc2 5 143 -37 369 0 0 0 chr9 10454949 10454990 -107407637 + (CA)n Simple_repeat Simple_repeat 2 42 0 4999 187 26 7 chr9 10456590 10458148 -107404479 + L1PA16 LINE L1 4591 6175 0 21 0 0 0 chr9 10458233 10458254 -107404373 + AT_rich Low_complexity Low_complexity 1 21 0 252 86 0 0 chr9 10458550 10458585 -107404042 + (T)n Simple_repeat Simple_repeat 1 35 0 11431 34 2 0 chr9 10460394 10461903 -107400724 - L1PA4 LINE L1 -624 5531 4018 5286 38 0 0 chr9 10461903 10462556 -107400071 + L1PA4 LINE L1 5519 6175 0 220 312 97 32 chr9 10462773 10462866 -107399761 - MIR SINE MIR -111 151 53 684 251 25 25 chr9 10463200 10463399 -107399228 + MIR SINE MIR 2 200 -62 281 189 19 0 chr9 10463400 10463453 -107399174 + L1PA16 LINE L1 5858 5911 -255 227 250 22 22 chr9 10463961 10464053 -107398574 - MER103 DNA DNA -63 103 12 422 293 183 11 chr9 10464252 10464443 -107398184 - MIR SINE MIR -20 242 19 316 346 63 0 chr9 10464730 10464889 -107397738 - MIR SINE MIR 0 262 94 26 0 0 0 chr9 10465030 10465056 -107397571 + AT_rich Low_complexity Low_complexity 1 26 0 26 64 0 0 chr9 10466559 10466606 -107396021 + AT_rich Low_complexity Low_complexity 1 47 0 29 0 0 0 chr9 10467403 10467432 -107395195 + AT_rich Low_complexity Low_complexity 1 29 0 2981 117 6 26 chr9 10467888 10468386 -107394241 + L1MB3 LINE L1 5696 6183 0 275 326 11 21 chr9 10469524 10469619 -107393008 + MIR3 SINE MIR 101 194 -14 319 192 164 14 chr9 10469914 10469987 -107392640 - MLT1I LTR MaLR -245 164 81 216 0 0 0 chr9 10470043 10470067 -107392560 + (A)n Simple_repeat Simple_repeat 1 24 0 435 311 90 6 chr9 10471511 10471688 -107390939 + MIR SINE MIR 65 256 -6 229 309 82 0 chr9 10471671 10471781 -107390846 + L2 LINE L2 3187 3305 -8 * 253 313 20 27 chr9 10471967 10472117 -107390510 + MLT1I LTR MaLR 1 149 -260 1864 171 13 19 chr9 10472212 10472587 -107390040 - L1MA8 LINE L1 -3 6288 5916 1717 155 19 7 chr9 10472588 10472897 -107389730 + L1MA8 LINE L1 5588 5900 -391 223 347 96 30 chr9 10474252 10474419 -107388208 - MIR SINE MIR -15 247 70 238 328 67 22 chr9 10475052 10475186 -107387441 + MIR SINE MIR 63 202 -60 2806 13 0 0 chr9 10475256 10475567 -107387060 - AluYa5 SINE Alu 0 311 1 529 275 28 3 chr9 10477234 10477445 -107385182 - MIR SINE MIR -37 225 9 306 289 52 39 chr9 10477550 10477721 -107384906 + MER5A DNA MER1_type 4 187 -2 408 241 15 3 chr9 10477754 10477889 -107384738 - MER5A DNA MER1_type 0 189 10 283 289 87 71 chr9 10477952 10478119 -107384508 - MER5A DNA MER1_type -11 167 12 189 132 0 0 chr9 10478501 10478539 -107384088 + (TC)n Simple_repeat Simple_repeat 2 39 0 257 244 12 0 chr9 10478569 10478655 -107383972 + (TA)n Simple_repeat Simple_repeat 1 87 0 829 226 122 19 chr9 10480391 10480710 -107381917 + Charlie4a DNA MER1_type 119 508 0 653 282 235 19 chr9 10480714 10481212 -107381415 + L2 LINE L2 2703 3313 0 1092 226 147 48 chr9 10481384 10481800 -107380827 - MLT1C LTR MaLR 0 467 11 342 0 0 0 chr9 10482226 10482264 -107380363 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 254 229 31 0 chr9 10482280 10482376 -107380251 + (TA)n Simple_repeat Simple_repeat 1 99 0 204 371 9 26 chr9 10482433 10482549 -107380078 + MIR SINE MIR 149 262 0 671 334 127 30 chr9 10482571 10482897 -107379730 + L3 LINE CR1 810 1103 -474 306 0 0 0 chr9 10482897 10482931 -107379696 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 671 334 127 30 chr9 10482931 10483179 -107379448 + L3 LINE CR1 1103 1440 -137 197 293 130 32 chr9 10483188 10483311 -107379316 - MIR SINE MIR -4 258 124 1235 191 62 57 chr9 10483539 10483962 -107378665 - LTR37A LTR ERV1 0 426 2 407 273 22 14 chr9 10484347 10484486 -107378141 - MIR SINE MIR -50 212 73 26 74 0 0 chr9 10484681 10484735 -107377892 + AT_rich Low_complexity Low_complexity 1 54 0 25 65 0 0 chr9 10484997 10485043 -107377584 + AT_rich Low_complexity Low_complexity 1 46 0 2200 110 0 0 chr9 10486055 10486345 -107376282 + AluSx SINE Alu 1 290 -22 2139 92 16 13 chr9 10489417 10489652 -107372975 - AluSg SINE Alu 0 310 123 315 0 0 0 chr9 10489652 10489687 -107372940 + (TG)n Simple_repeat Simple_repeat 2 36 0 2139 92 16 13 chr9 10489687 10489807 -107372820 - AluSg SINE Alu -187 123 5 333 0 0 0 chr9 10490456 10490493 -107372134 + (CA)n Simple_repeat Simple_repeat 2 38 0 1116 258 82 55 chr9 10490705 10491252 -107371375 + MER68 LTR ERV1 1 562 0 2436 172 29 2 chr9 10492223 10492676 -107369951 + MLT1C LTR MaLR 1 465 -2 24 0 0 0 chr9 10492886 10492910 -107369717 + AT_rich Low_complexity Low_complexity 1 24 0 180 338 56 28 chr9 10493370 10493583 -107369044 + L2 LINE L2 1880 2098 -1216 21 36 0 0 chr9 10493840 10493868 -107368759 + AT_rich Low_complexity Low_complexity 1 28 0 210 340 111 14 chr9 10495332 10495476 -107367151 + MIR SINE MIR 105 262 0 898 247 85 62 chr9 10496853 10497164 -107365463 + MLT1F LTR MaLR 3 328 -239 4534 268 13 22 chr9 10498448 10500587 -107362040 + L1PA16 LINE L1 2182 4249 -3335 7994 11 0 0 chr9 10500587 10501744 -107360883 + L1HS LINE L1 4999 6155 0 8408 213 26 28 chr9 10501750 10502446 -107360181 + L1PA16 LINE L1 4252 4948 -2656 230 0 33 0 chr9 10502446 10502476 -107360151 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 8408 213 26 28 chr9 10502476 10504359 -107358268 + L1PA16 LINE L1 4948 6823 -781 17718 31 1 0 chr9 10504359 10507317 -107355310 + L1PA3 LINE L1 3220 6155 0 8408 213 26 28 chr9 10507317 10508092 -107354535 + L1PA16 LINE L1 6823 7598 -6 23 33 0 0 chr9 10508127 10508157 -107354470 + AT_rich Low_complexity Low_complexity 1 30 0 270 293 0 57 chr9 10508255 10508361 -107354266 + MLT1F1 LTR MaLR 1 100 -467 22 0 0 0 chr9 10508361 10508383 -107354244 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr9 10509075 10509099 -107353528 + AT_rich Low_complexity Low_complexity 1 24 0 260 171 0 0 chr9 10509311 10509352 -107353275 - MER8 DNA MER2_type -2 237 197 * 2325 156 10 5 chr9 10509348 10509732 -107352895 + Tigger2 DNA MER2_type 2328 2713 -5 195 42 0 0 chr9 10510180 10510204 -107352423 + (TA)n Simple_repeat Simple_repeat 2 25 0 364 129 0 24 chr9 10510220 10510305 -107352322 + (CATA)n Simple_repeat Simple_repeat 2 84 0 465 256 51 51 chr9 10510306 10510482 -107352145 - L2 LINE L2 -4 3309 3134 676 45 0 0 chr9 10511294 10511383 -107351244 - L1PA2 LINE L1 -1 6154 6066 767 11 0 0 chr9 10511383 10511470 -107351157 + L1P1 LINE L1 5650 5736 -419 2043 133 3 0 chr9 10511627 10511921 -107350706 + AluSq SINE Alu 1 295 -18 276 290 130 23 chr9 10512342 10512473 -107350154 - L2 LINE L2 -2 3311 3167 703 241 24 0 chr9 10512708 10512874 -107349753 + MER5B DNA MER1_type 8 177 -1 191 418 11 0 chr9 10513630 10513721 -107348906 + MIR SINE MIR 7 98 -164 2258 112 0 0 chr9 10513753 10514058 -107348569 - AluSg SINE Alu -5 305 1 22 0 0 0 chr9 10514064 10514086 -107348541 + AT_rich Low_complexity Low_complexity 1 22 0 358 314 44 25 chr9 10514105 10514264 -107348363 + L1ME LINE L1 5611 5772 -349 3205 81 5 0 chr9 10514264 10514698 -107347929 + L1PA5 LINE L1 5716 6151 -3 200 135 0 96 chr9 10514701 10514753 -107347874 + (A)n Simple_repeat Simple_repeat 1 47 0 1287 120 0 6 chr9 10515089 10515272 -107347355 - AluSc SINE Alu -11 298 117 2333 83 3 3 chr9 10515286 10515586 -107347041 - AluSg SINE Alu -6 304 5 1891 237 147 20 chr9 10515601 10516518 -107346109 - L1ME1 LINE L1 0 6166 5170 333 140 0 0 chr9 10516515 10516572 -107346055 + L1MA7 LINE L1 5773 5829 -483 * 2188 80 7 0 chr9 10516573 10516849 -107345778 + AluSp SINE Alu 1 278 -35 2365 150 32 13 chr9 10516865 10517332 -107345295 + L1MA7 LINE L1 5815 6290 -1 392 250 100 5 chr9 10517339 10517539 -107345088 - L1ME1 LINE L1 -954 5192 4974 14380 197 92 11 chr9 10517579 10520104 -107342523 - L1PA13 LINE L1 -14 6791 4474 417 20 0 0 chr9 10520104 10520154 -107342473 + (TG)n Simple_repeat Simple_repeat 1 50 0 14380 197 92 11 chr9 10520154 10522033 -107340594 - L1PA13 LINE L1 -2331 4474 2750 207 0 0 0 chr9 10522033 10522056 -107340571 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1766 147 4 7 chr9 10522058 10522337 -107340290 - AluSg SINE Alu -32 278 1 14380 197 92 11 chr9 10522337 10522397 -107340230 - L1PA13 LINE L1 -4055 2750 1874 357 328 8 0 chr9 10522398 10522523 -107340104 - L1ME1 LINE L1 -2299 3847 3722 * 3553 236 9 9 chr9 10522518 10523255 -107339372 + L1MA4 LINE L1 6 742 -4586 242 100 40 0 chr9 10523255 10523305 -107339322 + L1MA4 LINE L1 707 758 -4570 2388 186 52 14 chr9 10523392 10524043 -107338584 + L1MA4 LINE L1 732 1398 -4065 888 216 0 10 chr9 10524041 10524245 -107338382 + L1MA4 LINE L1 2340 2541 -3787 * 1190 177 33 4 chr9 10524237 10524480 -107338147 + L1MA4 LINE L1 3524 3773 -2555 6544 193 25 10 chr9 10524485 10526630 -107335997 + L1MA4 LINE L1 4049 6231 -251 279 215 0 0 chr9 10526631 10526696 -107335931 + (TA)n Simple_repeat Simple_repeat 1 65 0 225 143 0 0 chr9 10526696 10526738 -107335889 - LTR66 LTR ERVL -171 439 398 384 103 0 0 chr9 10526739 10526797 -107335830 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 226 173 19 0 chr9 10527007 10527059 -107335568 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 23 0 0 0 chr9 10527132 10527155 -107335472 + AT_rich Low_complexity Low_complexity 1 23 0 208 278 37 0 chr9 10529912 10530020 -107332607 + (TA)n Simple_repeat Simple_repeat 2 113 0 231 206 40 8 chr9 10530033 10530159 -107332468 + (TA)n Simple_repeat Simple_repeat 1 130 0 2575 36 0 0 chr9 10533222 10533523 -107329104 + AluY SINE Alu 1 301 -10 593 274 43 43 chr9 10533809 10534043 -107328584 + L1M4b LINE L1 1348 1581 -5278 2259 72 14 0 chr9 10534439 10534730 -107327897 + AluY SINE Alu 1 295 -16 226 247 14 55 chr9 10535016 10535089 -107327538 + L2 LINE L2 3235 3304 -9 1558 140 73 62 chr9 10535231 10535550 -107327077 + THE1B LTR MaLR 1 326 -38 2357 70 3 0 chr9 10535550 10535852 -107326775 - AluY SINE Alu -8 303 1 1558 140 73 62 chr9 10535852 10535890 -107326737 + THE1B LTR MaLR 326 362 -2 27 49 0 0 chr9 10536415 10536456 -107326171 + AT_rich Low_complexity Low_complexity 1 41 0 303 282 39 19 chr9 10537367 10537470 -107325157 - MIR SINE MIR -102 160 56 2001 180 64 10 chr9 10538183 10538588 -107324039 + MSTB1 LTR MaLR 1 427 -5 264 323 91 38 chr9 10539212 10539398 -107323229 + MIR SINE MIR 67 262 0 22 0 0 0 chr9 10540265 10540287 -107322340 + AT_rich Low_complexity Low_complexity 1 22 0 370 370 36 51 chr9 10541347 10541736 -107320891 - L2 LINE L2 -436 2878 2496 1005 184 53 0 chr9 10542705 10542911 -107319716 - MER20 DNA MER1_type 0 219 3 340 374 63 35 chr9 10543130 10543448 -107319179 + HAL1 LINE L1 1444 1770 -737 514 282 159 9 chr9 10543631 10543851 -107318776 - MIR SINE MIR -1 261 9 409 250 32 32 chr9 10544331 10544455 -107318172 + L2 LINE L2 2765 2888 -426 729 294 68 39 chr9 10544499 10545192 -107317435 + L1 LINE L1 3529 4241 -1905 388 310 73 67 chr9 10545243 10545692 -107316935 + L1 LINE L1 4326 4777 -1369 261 231 96 29 chr9 10545762 10545866 -107316761 + L1 LINE L1 4904 5014 -1132 234 0 0 0 chr9 10545972 10545998 -107316629 + (A)n Simple_repeat Simple_repeat 1 26 0 2036 133 3 19 chr9 10546003 10546319 -107316308 + AluY SINE Alu 1 311 0 254 222 12 37 chr9 10546512 10546593 -107316034 - MIR SINE MIR -1 261 183 338 324 58 24 chr9 10546628 10546920 -107315707 + L1ME LINE L1 5366 5667 -497 247 268 74 121 chr9 10546952 10547183 -107315444 + MIR SINE MIR 26 245 -17 1903 136 7 0 chr9 10548172 10548484 -107314143 + AluSx SINE Alu 1 314 0 304 220 17 0 chr9 10548545 10548604 -107314023 + L2 LINE L2 3201 3260 -12 184 344 0 0 chr9 10548822 10548886 -107313741 + MIR SINE MIR 178 241 -21 24 0 0 0 chr9 10549100 10549124 -107313503 + AT_rich Low_complexity Low_complexity 1 24 0 541 308 85 27 chr9 10549465 10549689 -107312938 - MIR SINE MIR -6 256 20 338 87 0 0 chr9 10551491 10551537 -107311090 + LTR42 LTR ERVL 363 408 -87 208 351 88 40 chr9 10551810 10551958 -107310669 + L2 LINE L2 2585 2739 -575 22 0 0 0 chr9 10552357 10552379 -107310248 + AT_rich Low_complexity Low_complexity 1 22 0 287 260 144 0 chr9 10552858 10552962 -107309665 - MLT1H LTR MaLR 0 549 431 305 258 21 32 chr9 10553018 10553111 -107309516 + LTR42 LTR ERVL 1 92 -403 1149 176 10 10 chr9 10553120 10553325 -107309302 + LTR42 LTR ERVL 291 495 0 580 287 111 42 chr9 10553346 10553635 -107308992 - MLT1H LTR MaLR -228 321 13 183 363 72 85 chr9 10553649 10554037 -107308590 - L2 LINE L2 -78 3194 2812 1886 103 18 70 chr9 10554114 10554443 -107308184 + AluSx SINE Alu 1 312 0 2252 123 0 0 chr9 10554465 10554773 -107307854 + AluSq SINE Alu 1 308 -5 207 0 0 0 chr9 10555094 10555117 -107307510 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 10555248 10555269 -107307358 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 10555307 10555342 -107307285 + AT_rich Low_complexity Low_complexity 1 35 0 715 203 14 7 chr9 10556324 10556472 -107306155 - MLT1D LTR MaLR 0 505 357 225 0 0 0 chr9 10556475 10556500 -107306127 + (A)n Simple_repeat Simple_repeat 1 25 0 271 391 96 10 chr9 10556901 10557098 -107305529 - L3b LINE CR1 -69 1514 1301 22 0 0 0 chr9 10557886 10557908 -107304719 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr9 10558347 10558376 -107304251 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 486 0 0 0 chr9 10558375 10558429 -107304198 + (GA)n Simple_repeat Simple_repeat 2 55 0 206 276 35 0 chr9 10558499 10558557 -107304070 - MIR SINE MIR -123 139 80 206 289 82 41 chr9 10558805 10558902 -107303725 - MIR SINE MIR -1 261 161 1333 107 39 73 chr9 10558971 10559204 -107303423 - AluSq SINE Alu -13 300 76 292 233 0 0 chr9 10559271 10559331 -107303296 + MIR SINE MIR 103 162 -100 570 246 59 21 chr9 10559337 10559524 -107303103 + MLT1J LTR MaLR 7 200 -311 1079 236 52 35 chr9 10559812 10560180 -107302447 + L1ME1 LINE L1 5769 6142 -24 311 275 28 18 chr9 10560332 10560441 -107302186 + MIR SINE MIR 147 256 -6 1246 256 28 19 chr9 10560766 10561126 -107301501 + MLT1A1 LTR MaLR 1 363 -2 320 332 22 74 chr9 10563556 10563785 -107298842 - MIR SINE MIR -19 243 27 267 31 0 0 chr9 10563933 10563965 -107298662 + (CA)n Simple_repeat Simple_repeat 1 32 0 904 209 33 33 chr9 10564325 10564540 -107298087 + MER20 DNA MER1_type 1 215 -4 226 42 0 167 chr9 10565562 10565610 -107297017 - L1M2 LINE L1 -491 5821 5782 345 195 11 11 chr9 10565626 10565713 -107296914 - L1M2 LINE L1 -507 5793 5707 631 175 0 0 chr9 10565713 10565829 -107296798 + L1MA7 LINE L1 6170 6289 -2 225 239 65 33 chr9 10565883 10565975 -107296652 + L1ME4a LINE L1 5992 6086 -35 775 328 82 29 chr9 10565977 10566468 -107296159 + L3 LINE CR1 1052 1568 -9 261 57 0 0 chr9 10566694 10566729 -107295898 + (TA)n Simple_repeat Simple_repeat 1 35 0 831 192 15 56 chr9 10566846 10567044 -107295583 + MLT1A1 LTR MaLR 165 354 -11 21 0 0 0 chr9 10567199 10567220 -107295407 + AT_rich Low_complexity Low_complexity 1 21 0 201 158 0 26 chr9 10567281 10567319 -107295308 + MIR SINE MIR 219 255 -7 215 347 48 9 chr9 10567421 10567570 -107295057 + MER5A DNA MER1_type 1 164 -25 435 38 0 0 chr9 10569397 10569450 -107293177 + (TTTTA)n Simple_repeat Simple_repeat 2 54 0 1833 149 7 3 chr9 10569452 10569734 -107292893 - AluSx SINE Alu -29 283 1 22 88 0 0 chr9 10569783 10569840 -107292787 + AT_rich Low_complexity Low_complexity 1 57 0 384 384 83 35 chr9 10569902 10570300 -107292327 - L2 LINE L2 -1 3271 2855 240 328 71 74 chr9 10570626 10570937 -107291690 - L2 LINE L2 -880 2434 2125 671 262 52 98 chr9 10571005 10571372 -107291255 - L1ME2 LINE L1 0 6164 5815 628 225 0 48 chr9 10571369 10571556 -107291071 - L1M4 LINE L1 -2413 3733 3556 * 26 0 0 0 chr9 10571748 10571774 -107290853 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 10571896 10571924 -107290703 + AT_rich Low_complexity Low_complexity 1 28 0 2374 41 0 0 chr9 10572262 10572555 -107290072 + AluY SINE Alu 1 293 -18 291 191 0 0 chr9 10574663 10574731 -107287896 + (TA)n Simple_repeat Simple_repeat 1 68 0 212 169 51 0 chr9 10574752 10574811 -107287816 + (TA)n Simple_repeat Simple_repeat 1 62 0 318 106 0 0 chr9 10574826 10574873 -107287754 + (TA)n Simple_repeat Simple_repeat 2 48 0 1813 196 3 0 chr9 10575643 10575979 -107286648 + L1PB4 LINE L1 5808 6144 -12 284 267 145 23 chr9 10577394 10577525 -107285102 + MLT1J2 LTR MaLR 132 278 -172 208 0 0 0 chr9 10578298 10578321 -107284306 + (TTTG)n Simple_repeat Simple_repeat 2 104 0 1491 169 46 42 chr9 10578321 10578605 -107284022 - AluSq SINE Alu -28 285 1 686 314 59 26 chr9 10579367 10579828 -107282799 + L1ME LINE L1 5321 5796 -374 23 86 0 0 chr9 10579841 10579899 -107282728 + AT_rich Low_complexity Low_complexity 1 58 0 350 235 51 0 chr9 10579928 10580026 -107282601 + MER20 DNA MER1_type 113 215 -4 697 210 126 29 chr9 10580071 10580309 -107282318 + MER96B DNA MER1_type? 156 416 -1 210 174 0 22 chr9 10581309 10581355 -107281272 + (CA)n Simple_repeat Simple_repeat 2 46 0 243 299 97 8 chr9 10581518 10581652 -107280975 - MER117 DNA MER1_type -51 146 1 27 49 0 0 chr9 10582400 10582441 -107280186 + AT_rich Low_complexity Low_complexity 1 41 0 404 233 47 40 chr9 10582718 10582868 -107279759 + HAL1b LINE L1 1196 1346 -2 33 25 0 0 chr9 10583661 10583701 -107278926 + AT_rich Low_complexity Low_complexity 1 40 0 29 60 0 0 chr9 10583998 10584048 -107278579 + AT_rich Low_complexity Low_complexity 1 50 0 405 260 89 45 chr9 10584275 10584521 -107278106 - MIR SINE MIR -3 259 3 30 0 0 0 chr9 10584620 10584650 -107277977 + AT_rich Low_complexity Low_complexity 1 30 0 194 114 0 23 chr9 10584956 10585000 -107277627 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 229 313 0 0 chr9 10585291 10585358 -107277269 + (CA)n Simple_repeat Simple_repeat 1 67 0 22 0 0 0 chr9 10585546 10585568 -107277059 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 10586185 10586214 -107276413 + AT_rich Low_complexity Low_complexity 1 29 0 197 233 0 17 chr9 10587206 10587266 -107275361 + CT-rich Low_complexity Low_complexity 3 61 0 1652 177 3 21 chr9 10587412 10587744 -107274883 + AluSx SINE Alu 1 327 0 549 64 13 0 chr9 10588392 10588470 -107274157 - L1PA2 LINE L1 -3 6152 6074 2511 150 7 25 chr9 10588686 10589125 -107273502 + Tigger2a DNA MER2_type 4 434 0 22 0 0 0 chr9 10589171 10589193 -107273434 + AT_rich Low_complexity Low_complexity 1 22 0 26 88 0 0 chr9 10589213 10589281 -107273346 + AT_rich Low_complexity Low_complexity 1 68 0 212 191 60 71 chr9 10589944 10590028 -107272599 - MIR SINE MIR 0 262 180 1142 315 77 55 chr9 10590126 10590722 -107271905 - MER45C DNA AcHobo -343 610 2 180 111 0 0 chr9 10591736 10591763 -107270864 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 317 199 43 21 chr9 10592738 10592879 -107269748 + (TA)n Simple_repeat Simple_repeat 2 145 0 6541 42 0 0 chr9 10593096 10593892 -107268735 + L1PA4 LINE L1 5357 6152 -3 890 250 15 10 chr9 10594164 10594368 -107268259 + MLT1C LTR MaLR 263 467 0 851 70 8 0 chr9 10594421 10594549 -107268078 + (TCTA)n Simple_repeat Simple_repeat 3 131 0 201 171 49 0 chr9 10595557 10595598 -107267029 + G-rich Low_complexity Low_complexity 3 45 0 365 253 0 23 chr9 10595626 10595713 -107266914 + L2 LINE L2 3186 3270 -2 1797 177 39 52 chr9 10595778 10595986 -107266641 + MSTB2 LTR MaLR 1 210 -247 306 0 0 0 chr9 10595986 10596020 -107266607 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 351 0 0 0 chr9 10596019 10596058 -107266569 + (TG)n Simple_repeat Simple_repeat 1 39 0 1797 177 39 52 chr9 10596020 10596312 -107266315 + MSTB2 LTR MaLR 210 457 0 1504 103 0 5 chr9 10598016 10598219 -107264408 + AluSx SINE Alu 17 218 -94 47 0 0 0 chr9 10598230 10598277 -107264350 + AT_rich Low_complexity Low_complexity 1 47 0 1696 178 28 0 chr9 10600956 10601277 -107261350 + L1MC1 LINE L1 5986 6315 -18 2538 147 43 9 chr9 10602162 10602603 -107260024 + MER65C LTR ERV1 1 456 -5 1259 258 101 75 chr9 10602874 10603635 -107258992 + MER20B DNA MER1_type 3 783 0 2361 184 93 77 chr9 10603798 10604419 -107258208 + MER39 LTR ERV1 75 705 -2 273 173 0 0 chr9 10604564 10604616 -107258011 + L1ME1 LINE L1 3680 3731 -2415 2980 253 49 35 chr9 10604750 10605891 -107256736 + L1ME1 LINE L1 5007 6161 -5 227 300 29 0 chr9 10606528 10606598 -107256029 - L2 LINE L2 -5 3267 3196 257 167 19 0 chr9 10606933 10606987 -107255640 + GA-rich Low_complexity Low_complexity 1 55 0 425 299 147 5 chr9 10607924 10608128 -107254499 + MIR SINE MIR 28 260 -2 283 378 45 0 chr9 10608313 10608424 -107254203 + L2 LINE L2 3145 3260 -12 184 296 56 0 chr9 10609487 10609541 -107253086 - L2 LINE L2 -4 3268 3212 204 250 0 0 chr9 10609660 10609708 -107252919 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1787 149 4 0 chr9 10610271 10610572 -107252055 - AluSq SINE Alu 0 302 1 1007 136 13 0 chr9 10610794 10610949 -107251678 + AluSp SINE Alu 152 308 -5 31 26 0 0 chr9 10610949 10610987 -107251640 + AT_rich Low_complexity Low_complexity 1 38 0 2107 141 45 17 chr9 10611875 10612229 -107250398 + THE1B LTR MaLR 1 364 0 186 71 0 0 chr9 10612541 10612569 -107250058 + (A)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr9 10613910 10613934 -107248693 + AT_rich Low_complexity Low_complexity 1 24 0 280 223 43 0 chr9 10614810 10614929 -107247698 + (TA)n Simple_repeat Simple_repeat 1 124 0 268 267 91 61 chr9 10615233 10615398 -107247229 - MIR SINE MIR -30 232 63 21 0 0 0 chr9 10615429 10615450 -107247177 + AT_rich Low_complexity Low_complexity 1 21 0 342 276 80 75 chr9 10615488 10615687 -107246940 + MIR SINE MIR 63 262 0 769 265 87 107 chr9 10615728 10615808 -107246819 + MLT1G1 LTR MaLR 6 86 -509 1760 141 87 14 chr9 10615808 10616163 -107246464 + L1MA7 LINE L1 5911 6291 0 769 265 87 107 chr9 10616163 10616520 -107246107 + MLT1G1 LTR MaLR 86 434 -161 21 57 0 0 chr9 10616599 10616634 -107245993 + AT_rich Low_complexity Low_complexity 1 35 0 264 219 31 0 chr9 10616634 10616698 -107245929 + MLT1G1 LTR MaLR 522 587 -8 2161 118 3 0 chr9 10616816 10617112 -107245515 - AluSx SINE Alu -15 297 1 5047 130 60 24 chr9 10619209 10619905 -107242722 - Tigger3b DNA MER2_type -1799 1229 490 1907 151 6 62 chr9 10619905 10620262 -107242365 + MER1B DNA MER1_type 1 337 0 5047 130 60 24 chr9 10620262 10620487 -107242140 - Tigger3b DNA MER2_type -2538 490 275 554 194 10 0 chr9 10620489 10620587 -107242040 - Tigger3b DNA MER2_type -1132 99 1 250 310 22 92 chr9 10620771 10620955 -107241672 + L2 LINE L2 2868 3038 -234 186 310 220 20 chr9 10621066 10621166 -107241461 + L2 LINE L2 3137 3256 -16 189 107 0 0 chr9 10622773 10622801 -107239826 + (TC)n Simple_repeat Simple_repeat 1 28 0 22 35 0 0 chr9 10622865 10622894 -107239733 + AT_rich Low_complexity Low_complexity 1 29 0 2458 61 0 6 chr9 10623040 10623353 -107239274 - AluY SINE Alu 0 311 1 322 244 56 0 chr9 10624115 10624205 -107238422 - MER53 DNA DNA -93 96 2 309 281 22 0 chr9 10625009 10625098 -107237529 + L1MC4 LINE L1 6614 6704 -1338 198 103 0 0 chr9 10625098 10625127 -107237500 + (TA)n Simple_repeat Simple_repeat 1 29 0 26 30 0 0 chr9 10626197 10626230 -107236397 + AT_rich Low_complexity Low_complexity 1 33 0 407 330 91 17 chr9 10626329 10626559 -107236068 - MIR SINE MIR -12 250 4 425 353 8 0 chr9 10626622 10626755 -107235872 + MIR SINE MIR 16 149 -59 2128 119 42 33 chr9 10626855 10627216 -107235411 + THE1B LTR MaLR 1 364 0 10214 103 33 40 chr9 10627216 10628806 -107233821 + THE1B-int LTR MaLR 1 1580 0 2062 134 42 28 chr9 10628806 10629165 -107233462 + THE1B LTR MaLR 1 364 0 396 299 75 86 chr9 10629175 10629544 -107233083 + MLT1H LTR MaLR 137 501 -48 1140 175 0 0 chr9 10629544 10629727 -107232900 - MER58A DNA MER1_type 0 224 42 285 207 0 0 chr9 10629793 10629851 -107232776 + MLT1H LTR MaLR 491 548 -1 255 274 0 0 chr9 10630127 10630189 -107232438 + (CA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr9 10630343 10630371 -107232256 + AT_rich Low_complexity Low_complexity 1 28 0 2173 106 3 10 chr9 10630938 10631250 -107231377 + AluSg SINE Alu 1 310 0 243 228 63 13 chr9 10631641 10631720 -107230907 + L1ME LINE L1 5541 5623 -498 1234 194 38 69 chr9 10632028 10632316 -107230311 + AluJo SINE Alu 1 279 -33 345 47 0 0 chr9 10632323 10632366 -107230261 + (TAA)n Simple_repeat Simple_repeat 2 44 0 755 178 82 0 chr9 10632940 10633086 -107229541 - MER20 DNA MER1_type -61 158 1 224 224 0 0 chr9 10633399 10633448 -107229179 + (TATG)n Simple_repeat Simple_repeat 4 52 0 21 71 0 0 chr9 10634241 10634283 -107228344 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr9 10634864 10634893 -107227734 + AT_rich Low_complexity Low_complexity 1 29 0 1187 172 84 56 chr9 10634904 10635154 -107227473 - AluJo SINE Alu -55 257 1 33 66 0 0 chr9 10635224 10635285 -107227342 + AT_rich Low_complexity Low_complexity 1 61 0 2237 117 0 0 chr9 10635563 10635871 -107226756 - AluSx SINE Alu -4 308 1 21 0 0 0 chr9 10685913 10685934 -107176693 + AT_rich Low_complexity Low_complexity 1 21 0 2191 193 62 32 chr9 10685981 10686514 -107176113 - L1MB8 LINE L1 -5 6173 5625 318 325 9 18 chr9 10688072 10688186 -107174441 + MIR3 SINE MIR 91 203 -5 247 258 76 106 chr9 10689105 10689237 -107173390 + MER91B DNA MER1_type 2 129 -61 244 269 97 43 chr9 10689262 10689355 -107173272 + MER91B DNA MER1_type 91 188 -2 203 86 0 29 chr9 10689450 10689485 -107173142 + (GA)n Simple_repeat Simple_repeat 1 34 0 221 121 0 48 chr9 10691211 10691294 -107171333 + (CAAAAA)n Simple_repeat Simple_repeat 3 81 0 465 293 104 4 chr9 10691436 10691632 -107170995 + MIR SINE MIR 48 257 -5 2136 77 13 7 chr9 10691911 10692211 -107170416 + AluY SINE Alu 1 302 -9 228 35 0 0 chr9 10692797 10692826 -107169801 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2219 71 0 0 chr9 10692828 10693108 -107169519 - AluY SINE Alu -31 280 1 289 204 65 75 chr9 10693655 10693748 -107168879 - L2 LINE L2 -1 3312 3221 21 36 0 0 chr9 10694079 10694107 -107168520 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 10694395 10694425 -107168202 + (CA)n Simple_repeat Simple_repeat 1 30 0 677 217 76 60 chr9 10694538 10694649 -107167978 - MER5A DNA MER1_type -2 187 70 1453 183 7 47 chr9 10694649 10694950 -107167677 - AluJo SINE Alu -23 289 1 677 217 76 60 chr9 10694950 10695022 -107167605 - MER5A DNA MER1_type -119 70 1 22 0 0 0 chr9 10696014 10696036 -107166591 + AT_rich Low_complexity Low_complexity 1 22 0 426 234 236 1 chr9 10696143 10696322 -107166305 + MIR SINE MIR 20 232 -30 212 231 96 0 chr9 10696301 10696353 -107166274 + L2 LINE L2 3216 3272 0 * 287 315 102 9 chr9 10696433 10696541 -107166086 + MIR3 SINE MIR 89 206 -2 474 287 102 0 chr9 10696640 10696797 -107165830 - MER5B DNA MER1_type -2 176 4 228 35 0 0 chr9 10697160 10697189 -107165438 + (CA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr9 10697200 10697234 -107165393 + AT_rich Low_complexity Low_complexity 1 34 0 349 314 73 0 chr9 10697370 10697494 -107165133 + L2 LINE L2 3180 3312 -1 304 273 0 34 chr9 10697509 10697597 -107165030 - L1ME LINE L1 -682 5439 5355 241 325 62 19 chr9 10697962 10698122 -107164505 + MIR3 SINE MIR 33 199 -9 258 132 75 0 chr9 10698220 10698273 -107164354 + Alu SINE Alu 246 302 0 1135 186 81 39 chr9 10698549 10698893 -107163734 - MLT1E3 LTR MaLR -5 619 231 392 266 47 90 chr9 10699541 10699640 -107162987 + MIR SINE MIR 25 127 -135 2381 63 7 0 chr9 10699640 10699942 -107162685 - AluY SINE Alu -7 304 1 392 266 47 90 chr9 10699942 10700075 -107162552 + MIR SINE MIR 127 247 -15 251 218 18 0 chr9 10700077 10700132 -107162495 + (TATG)n Simple_repeat Simple_repeat 2 57 0 1110 198 0 5 chr9 10700277 10700469 -107162158 + AluJb SINE Alu 85 275 -37 39 22 0 0 chr9 10700476 10700522 -107162105 + AT_rich Low_complexity Low_complexity 1 46 0 1875 146 0 10 chr9 10700625 10700933 -107161694 - AluSg SINE Alu -5 305 1 211 111 28 0 chr9 10702189 10702225 -107160402 + G-rich Low_complexity Low_complexity 1 37 0 186 143 0 0 chr9 10703058 10703093 -107159534 + (T)n Simple_repeat Simple_repeat 1 35 0 321 310 115 48 chr9 10705080 10705336 -107157291 + MLT1L LTR MaLR 175 457 -158 1618 204 25 67 chr9 10705336 10705860 -107156767 + MLT1D LTR MaLR 1 502 -3 321 310 115 48 chr9 10705860 10705916 -107156711 + MLT1L LTR MaLR 457 508 -107 669 272 217 19 chr9 10706206 10706519 -107156108 + L2 LINE L2 2428 2802 -512 250 260 71 97 chr9 10706525 10706679 -107155948 + MLT1I LTR MaLR 242 391 -18 284 272 54 33 chr9 10708639 10708731 -107153896 - MIR3 SINE MIR -2 206 113 1117 223 42 28 chr9 10709647 10709934 -107152693 + MLT1E2 LTR MaLR 1 291 -335 1812 182 91 41 chr9 10710275 10710714 -107151913 + LOR1b LTR ERV1 1 461 0 215 31 31 0 chr9 10711138 10711170 -107151457 + (TA)n Simple_repeat Simple_repeat 2 34 0 651 47 12 0 chr9 10711170 10711256 -107151371 - L1PA5 LINE L1 -9 6145 6059 22 0 0 0 chr9 10711273 10711295 -107151332 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 10711312 10711356 -107151271 + AT_rich Low_complexity Low_complexity 1 44 0 226 188 21 0 chr9 10712707 10712755 -107149872 + (TA)n Simple_repeat Simple_repeat 1 49 0 22 0 0 0 chr9 10712785 10712807 -107149820 + AT_rich Low_complexity Low_complexity 1 22 0 317 287 40 33 chr9 10712981 10713131 -107149496 + MIR SINE MIR 110 260 -2 21 82 0 0 chr9 10713166 10713215 -107149412 + AT_rich Low_complexity Low_complexity 1 49 0 213 429 15 0 chr9 10713405 10713538 -107149089 + MIR3 SINE MIR 33 167 -41 261 122 0 41 chr9 10714253 10714302 -107148325 + L1PA7 LINE L1 5 51 -6410 * 31052 108 6 23 chr9 10714284 10720463 -107142164 + L1PA7 LINE L1 292 6461 -8 5451 173 33 18 chr9 10720967 10722845 -107139782 - L1MA4A LINE L1 -5 6298 4392 702 318 40 16 chr9 10722828 10723149 -107139478 - L1MC/D LINE L1 -1985 5823 5495 * 1945 142 0 40 chr9 10723375 10723698 -107138929 - AluSx SINE Alu -1 311 2 228 367 11 57 chr9 10725420 10725571 -107137056 + MIR SINE MIR 33 176 -62 286 255 92 41 chr9 10725599 10725697 -107136930 - L2 LINE L2 -3 3310 3208 189 0 0 0 chr9 10727432 10727453 -107135174 + (CA)n Simple_repeat Simple_repeat 2 22 0 243 377 83 30 chr9 10728114 10728644 -107133983 - L2 LINE L2 -527 2787 2230 340 273 23 0 chr9 10730141 10730229 -107132398 - L1MC4 LINE L1 -1339 6703 6614 23 0 0 0 chr9 10730981 10731004 -107131623 + AT_rich Low_complexity Low_complexity 1 23 0 400 259 47 59 chr9 10731567 10731737 -107130890 - Charlie8 DNA MER1_type -2188 229 62 827 204 11 11 chr9 10732642 10732823 -107129804 - AluJb SINE Alu -9 303 123 216 250 0 0 chr9 10733025 10733069 -107129558 + CT-rich Low_complexity Low_complexity 4 47 0 1758 180 13 0 chr9 10734759 10735059 -107127568 - AluJb SINE Alu -8 304 1 192 386 0 39 chr9 10735315 10735442 -107127185 - L2 LINE L2 -255 3058 2937 1112 217 91 0 chr9 10737175 10737234 -107125393 - AluJo SINE Alu 0 349 297 792 96 0 0 chr9 10737234 10737349 -107125278 + (TCCCC)n Simple_repeat Simple_repeat 2 116 0 1112 217 91 0 chr9 10737349 10737497 -107125130 - AluJo SINE Alu -52 297 109 180 77 0 0 chr9 10737497 10737523 -107125104 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1112 217 91 0 chr9 10737523 10737605 -107125022 - AluJo SINE Alu -240 109 36 279 184 13 79 chr9 10738560 10738636 -107123991 + 7SK RNA RNA 16 86 -107 434 282 160 0 chr9 10739163 10739319 -107123308 - MER5A DNA MER1_type -1 188 8 24 32 0 0 chr9 10740097 10740128 -107122499 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr9 10740630 10740682 -107121945 + AT_rich Low_complexity Low_complexity 1 52 0 303 154 0 144 chr9 10741119 10741223 -107121404 + L1MC4 LINE L1 6615 6703 -1339 22 0 0 0 chr9 10741632 10741654 -107120973 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 10743378 10743399 -107119228 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 10743433 10743456 -107119171 + AT_rich Low_complexity Low_complexity 1 23 0 1435 306 50 28 chr9 10744606 10745244 -107117383 + MLT2F LTR ERVL 11 628 0 375 251 89 10 chr9 10745422 10745565 -107117062 + MLT1G LTR MaLR 413 585 -10 195 292 67 22 chr9 10746411 10746500 -107116127 - MIR SINE MIR -58 204 112 629 325 0 0 chr9 10746680 10746837 -107115790 - MIR SINE MIR -100 162 6 424 297 21 68 chr9 10746939 10747131 -107115496 + L2 LINE L2 3131 3313 0 4598 218 17 34 chr9 10748305 10750200 -107112427 + L1MC/D LINE L1 3860 5718 -615 378 198 79 20 chr9 10750411 10750512 -107112115 - MLT1J2 LTR MaLR -239 211 105 386 183 29 0 chr9 10750550 10750654 -107111973 + L1M4 LINE L1 3869 3975 -2171 522 341 78 15 chr9 10751724 10751929 -107110698 - MIR SINE MIR -44 218 1 26 0 0 0 chr9 10751993 10752019 -107110608 + AT_rich Low_complexity Low_complexity 1 26 0 258 371 53 7 chr9 10754582 10754733 -107107894 + MIR SINE MIR 61 218 -44 367 262 28 28 chr9 10754973 10755080 -107107547 + MIR3 SINE MIR 54 160 -48 199 276 69 0 chr9 10755721 10755779 -107106848 + MIR SINE MIR 92 153 -109 196 345 76 25 chr9 10756802 10756921 -107105706 + L2 LINE L2 3147 3271 -1 7617 52 5 48 chr9 10757016 10758877 -107103750 - L1PA6 LINE L1 -4 6150 4337 201 317 17 100 chr9 10759059 10759179 -107103448 + L2 LINE L2 3182 3291 -22 30 59 0 0 chr9 10759195 10759246 -107103381 + AT_rich Low_complexity Low_complexity 1 51 0 5527 66 19 4 chr9 10759308 10760049 -107102578 - L1PA7 LINE L1 0 6154 5403 889 213 48 54 chr9 10761329 10761438 -107101189 - L1MA4 LINE L1 -6 6294 6186 2323 105 3 0 chr9 10761438 10761744 -107100883 - AluSp SINE Alu -6 307 1 889 213 48 54 chr9 10761744 10761810 -107100817 - L1MA4 LINE L1 -114 6186 6121 1933 130 3 3 chr9 10761810 10762103 -107100524 + AluSx SINE Alu 1 293 -19 889 213 48 54 chr9 10762103 10762240 -107100387 - L1MA4 LINE L1 -179 6121 5983 240 246 29 0 chr9 10762495 10762564 -107100063 - MER117 DNA MER1_type -51 146 76 1834 136 5 87 chr9 10762769 10763158 -107099469 + MER4A LTR ERV1 1 357 -307 447 176 119 31 chr9 10763212 10763371 -107099256 + MER4C LTR ERV1 293 465 0 31 44 0 0 chr9 10763717 10763762 -107098865 + AT_rich Low_complexity Low_complexity 1 45 0 280 254 0 0 chr9 10763768 10763831 -107098796 + MLT1D LTR MaLR 3 65 -440 1127 117 6 6 chr9 10763832 10763995 -107098632 - AluSx SINE Alu -149 163 1 21 71 0 0 chr9 10764469 10764511 -107098116 + AT_rich Low_complexity Low_complexity 1 42 0 532 287 67 15 chr9 10764511 10764706 -107097921 - MIR SINE MIR -17 245 41 270 308 114 35 chr9 10764804 10765093 -107097534 - L2 LINE L2 0 3313 3002 312 284 7 61 chr9 10768566 10768714 -107093913 - L1MEd LINE L1 -5968 151 12 2331 91 3 0 chr9 10769505 10769812 -107092815 - AluSp SINE Alu -5 308 1 2137 117 3 3 chr9 10770708 10771015 -107091612 - AluSx SINE Alu -5 307 1 524 298 98 9 chr9 10771412 10771627 -107091000 + MIR SINE MIR 23 256 -6 432 132 0 0 chr9 10771688 10771756 -107090871 - MER41A LTR ERV1 -86 468 401 257 177 152 0 chr9 10772139 10772218 -107090409 + L1MA4A LINE L1 6208 6298 -5 263 289 44 31 chr9 10773304 10773463 -107089164 - HAL1 LINE L1 -5 2502 2342 203 393 8 25 chr9 10774202 10774324 -107088303 + MIR3 SINE MIR 37 156 -52 1317 249 83 18 chr9 10774654 10774855 -107087772 - Charlie1b DNA MER1_type -2238 523 337 2416 58 7 0 chr9 10774855 10775163 -107087464 + AluY SINE Alu 1 310 -1 1317 249 83 18 chr9 10775163 10775452 -107087175 - Charlie1b DNA MER1_type -2424 337 1 383 313 6 3 chr9 10776275 10776443 -107086184 - MIR SINE MIR -11 251 33 2192 89 0 0 chr9 10776634 10776941 -107085686 + AluSg SINE Alu 1 307 0 352 314 0 0 chr9 10776941 10777027 -107085600 + L2 LINE L2 3220 3305 -8 459 320 154 0 chr9 10777169 10777325 -107085302 - MER5A DNA MER1_type -6 183 4 2444 72 0 7 chr9 10778026 10778333 -107084294 - AluY SINE Alu -4 307 3 275 382 14 14 chr9 10778335 10778447 -107084180 - MIR SINE MIR -111 151 37 374 183 0 0 chr9 10778447 10778529 -107084098 + L1PB4 LINE L1 6068 6149 -7 275 382 14 14 chr9 10778529 10778560 -107084067 - MIR SINE MIR -224 38 8 189 341 11 23 chr9 10778871 10778959 -107083668 + L2 LINE L2 2261 2347 -967 226 296 0 0 chr9 10779668 10779722 -107082905 + L2 LINE L2 3219 3272 0 27 0 0 0 chr9 10779812 10779839 -107082788 + AT_rich Low_complexity Low_complexity 1 27 0 341 274 19 0 chr9 10780699 10780805 -107081822 - L1MC5 LINE L1 -67 7894 7787 362 288 54 0 chr9 10780981 10781092 -107081535 + L1ME3A LINE L1 6045 6161 -9 211 269 15 30 chr9 10781857 10781924 -107080703 + MIR SINE MIR 87 152 -110 190 376 28 50 chr9 10783105 10783246 -107079381 + MIR SINE MIR 9 146 -116 632 274 13 27 chr9 10783940 10784154 -107078473 - MIR SINE MIR 0 262 55 356 281 125 44 chr9 10785129 10785424 -107077203 - HAL1 LINE L1 -127 2380 2062 650 289 64 68 chr9 10785516 10785970 -107076657 - HAL1 LINE L1 -607 1900 1449 1726 140 68 0 chr9 10786871 10787166 -107075461 - AluSx SINE Alu 0 313 1 542 335 6 0 chr9 10787800 10787976 -107074651 + MER102a DNA MER1_type 143 319 -11 24 32 0 0 chr9 10790423 10790454 -107072173 + AT_rich Low_complexity Low_complexity 1 31 0 3511 98 17 2 chr9 10790803 10791325 -107071302 - L1MA2 LINE L1 -6 6298 5769 2998 46 0 3 chr9 10791333 10791702 -107070925 - L1PA5 LINE L1 -8 6146 5779 953 35 0 0 chr9 10791702 10791817 -107070810 + L1P2 LINE L1 5461 5575 -580 * 2834 165 8 36 chr9 10791804 10793500 -107069127 - L1MA2 LINE L1 -507 5797 4052 678 216 0 49 chr9 10793986 10794148 -107068479 - FRAM SINE Alu -12 164 11 26 0 0 0 chr9 10795106 10795132 -107067495 + AT_rich Low_complexity Low_complexity 1 26 0 229 250 104 10 chr9 10795886 10795982 -107066645 + MIR SINE MIR 102 206 -56 24 0 0 0 chr9 10796875 10796899 -107065728 + AT_rich Low_complexity Low_complexity 1 24 0 2199 108 20 6 chr9 10798020 10798363 -107064264 + L1MA2 LINE L1 5957 6304 0 195 308 13 51 chr9 10799280 10799358 -107063269 + L2 LINE L2 3099 3173 -99 386 286 130 25 chr9 10799637 10799798 -107062829 + MIR SINE MIR 56 233 -29 230 321 123 45 chr9 10800456 10800694 -107061933 + MLT1K LTR MaLR 142 405 -183 207 0 0 0 chr9 10800694 10800717 -107061910 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 230 321 123 45 chr9 10800717 10800746 -107061881 + MLT1K LTR MaLR 405 430 -158 1487 193 89 65 chr9 10800787 10801280 -107061347 + MLT1D LTR MaLR 1 505 0 864 144 0 0 chr9 10801862 10801994 -107060633 - FLAM_C SINE Alu 0 133 2 226 204 23 0 chr9 10802453 10802497 -107060130 + L2 LINE L2 3266 3310 -3 25 65 0 0 chr9 10802592 10802638 -107059989 + AT_rich Low_complexity Low_complexity 1 46 0 518 333 61 0 chr9 10802719 10802917 -107059710 + MIR SINE MIR 47 256 -6 2073 246 54 27 chr9 10804967 10805560 -107057067 - MER90 LTR ERV1 0 614 6 463 343 111 11 chr9 10805592 10805863 -107056764 + L2 LINE L2 2501 2798 -516 687 318 82 21 chr9 10805910 10806240 -107056387 + L2 LINE L2 2931 3280 -33 270 56 0 0 chr9 10807322 10807358 -107055269 + (TG)n Simple_repeat Simple_repeat 1 36 0 688 186 0 0 chr9 10807543 10807656 -107054971 + FLAM_C SINE Alu 1 113 -30 232 111 37 0 chr9 10807721 10807775 -107054852 + (TA)n Simple_repeat Simple_repeat 1 56 0 376 297 45 0 chr9 10807965 10808076 -107054551 - L2 LINE L2 -33 3280 3165 591 160 17 0 chr9 10808079 10808254 -107054373 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 36 0 0 chr9 10808263 10808291 -107054336 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr9 10808979 10809010 -107053617 + (T)n Simple_repeat Simple_repeat 1 31 0 2434 50 0 13 chr9 10809143 10809460 -107053167 - L1PA5 LINE L1 -8 6146 5834 351 174 0 0 chr9 10809970 10810056 -107052571 + GA-rich Low_complexity Low_complexity 2 87 0 390 330 77 6 chr9 10811227 10811409 -107051218 + MIR SINE MIR 47 241 -21 1405 131 31 207 chr9 10811567 10811988 -107050639 + MER7A DNA MER2_type 2 346 0 1299 205 4 15 chr9 10812132 10812400 -107050227 + AluJo SINE Alu 3 267 -45 245 192 0 0 chr9 10812400 10812452 -107050175 + (TA)n Simple_repeat Simple_repeat 1 52 0 442 250 0 43 chr9 10812453 10812569 -107050058 + MER77 LTR ERV1 491 601 -4 189 360 50 0 chr9 10812571 10812671 -107049956 - L2 LINE L2 -20 3293 3189 561 306 56 0 chr9 10812823 10812983 -107049644 - MIR SINE MIR -71 191 23 254 352 112 60 chr9 10813483 10814052 -107048575 - L2 LINE L2 -5 3267 2688 595 312 86 17 chr9 10814116 10814350 -107048277 + MIR SINE MIR 11 260 -2 21 36 0 0 chr9 10814402 10814430 -107048197 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr9 10814797 10814825 -107047802 + AT_rich Low_complexity Low_complexity 1 28 0 554 254 28 14 chr9 10815440 10815582 -107047045 + MER106A DNA MER1_type 1 144 -92 288 0 0 0 chr9 10817333 10817365 -107045262 + (TA)n Simple_repeat Simple_repeat 2 33 0 34 42 0 0 chr9 10817486 10817534 -107045093 + AT_rich Low_complexity Low_complexity 1 48 0 2802 178 55 3 chr9 10817542 10818268 -107044359 + L1MC1 LINE L1 5442 6322 -11 25 31 0 0 chr9 10818272 10818304 -107044323 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr9 10819932 10819956 -107042671 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr9 10821299 10821325 -107041302 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr9 10821955 10821988 -107040639 + AT_rich Low_complexity Low_complexity 1 33 0 594 281 97 0 chr9 10823107 10823303 -107039324 + MER58C DNA MER1_type 1 215 0 1710 217 43 27 chr9 10823729 10824199 -107038428 + MLT1F LTR MaLR 5 542 0 264 119 51 0 chr9 10824359 10824418 -107038209 + (TA)n Simple_repeat Simple_repeat 1 62 0 517 294 91 5 chr9 10824947 10825168 -107037459 + MIR SINE MIR 13 252 -10 9460 200 31 10 chr9 10826276 10826711 -107035916 + L1PA14 LINE L1 3240 3664 -2497 465 50 0 0 chr9 10826711 10826771 -107035856 + (CA)n Simple_repeat Simple_repeat 2 61 0 9460 200 31 10 chr9 10826771 10829211 -107033416 + L1PA14 LINE L1 3664 6160 -1 256 319 11 11 chr9 10829251 10829345 -107033282 + MIR SINE MIR 112 205 -57 2004 123 0 35 chr9 10830171 10830487 -107032140 + AluSx SINE Alu 1 305 -7 1142 215 55 70 chr9 10830738 10831213 -107031414 - MER110A LTR ERV1 0 468 1 579 216 60 117 chr9 10832509 10832552 -107030075 + L2 LINE L2 3038 3082 -231 468 0 0 0 chr9 10832552 10832604 -107030023 + (CA)n Simple_repeat Simple_repeat 2 53 0 579 216 60 117 chr9 10832604 10832843 -107029784 + L2 LINE L2 3082 3304 -9 344 347 52 21 chr9 10833250 10833443 -107029184 + L2 LINE L2 1876 2074 -1240 796 273 72 29 chr9 10833604 10833981 -107028646 - Charlie7 DNA MER1_type -1889 723 331 235 180 20 0 chr9 10834163 10834213 -107028414 + (TAA)n Simple_repeat Simple_repeat 1 51 0 195 302 0 32 chr9 10834257 10834320 -107028307 - MIR SINE MIR -6 256 196 291 362 133 20 chr9 10834335 10834531 -107028096 - L3 LINE CR1 -1325 252 35 1358 82 117 0 chr9 10835075 10835281 -107027346 + MER30 DNA MER1_type 1 230 0 220 244 8 73 chr9 10835843 10835966 -107026661 + T-rich Low_complexity Low_complexity 6 120 0 210 360 90 9 chr9 10836077 10836141 -107026486 - L2 LINE L2 0 3272 3215 7047 53 0 3 chr9 10836141 10837569 -107025058 + L1PA6 LINE L1 4716 6148 -6 210 360 90 9 chr9 10837569 10837615 -107025012 - L2 LINE L2 -57 3215 3153 270 0 0 0 chr9 10838419 10838449 -107024178 + (TC)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr9 10839919 10839942 -107022685 + AT_rich Low_complexity Low_complexity 1 23 0 261 233 14 14 chr9 10840058 10840131 -107022496 + (TA)n Simple_repeat Simple_repeat 1 73 0 21 82 0 0 chr9 10842072 10842121 -107020506 + AT_rich Low_complexity Low_complexity 1 49 0 1745 138 42 18 chr9 10842142 10842425 -107020202 + AluSg SINE Alu 4 293 -17 305 274 32 42 chr9 10842999 10843094 -107019533 + MIR SINE MIR 86 179 -83 31 26 0 0 chr9 10843167 10843205 -107019422 + AT_rich Low_complexity Low_complexity 1 38 0 2530 168 33 6 chr9 10843274 10843761 -107018866 + L1MA4A LINE L1 5479 5978 -325 335 262 0 57 chr9 10843782 10843904 -107018723 + L1PB4 LINE L1 5941 6055 -101 269 320 41 10 chr9 10843922 10844019 -107018608 - MIR SINE MIR -71 191 92 21 82 0 0 chr9 10844388 10844437 -107018190 + AT_rich Low_complexity Low_complexity 1 49 0 7703 19 1 1 chr9 10845330 10846555 -107016072 + L1PA2 LINE L1 4931 6155 0 21 0 0 0 chr9 10847381 10847402 -107015225 + AT_rich Low_complexity Low_complexity 1 21 0 314 381 14 14 chr9 10849506 10849645 -107012982 - MIR3 SINE MIR -66 142 4 228 185 37 0 chr9 10850335 10850389 -107012238 + L1MC4 LINE L1 6648 6703 -1339 209 171 0 0 chr9 10850696 10850731 -107011896 + (CA)n Simple_repeat Simple_repeat 2 36 0 195 42 0 0 chr9 10852111 10852135 -107010492 + (TA)n Simple_repeat Simple_repeat 1 24 0 217 359 48 10 chr9 10852146 10852249 -107010378 - MIR SINE MIR -114 148 42 514 178 10 40 chr9 10852432 10852533 -107010094 + Tigger5 DNA MER2_type 2225 2322 -1 22 56 0 0 chr9 10852825 10852861 -107009766 + AT_rich Low_complexity Low_complexity 1 36 0 249 103 0 0 chr9 10854091 10854130 -107008497 + L1PA3 LINE L1 6115 6153 -2 320 365 67 47 chr9 10855109 10855408 -107007219 + L2 LINE L2 2530 2834 -480 227 357 64 32 chr9 10855489 10855646 -107006981 + L2 LINE L2 2897 3058 -214 180 0 0 0 chr9 10857951 10857971 -107004656 + (CA)n Simple_repeat Simple_repeat 1 20 0 1758 180 13 0 chr9 10860650 10860950 -107001677 - AluJb SINE Alu -8 304 1 192 386 0 39 chr9 10861207 10861334 -107001293 - L2 LINE L2 -255 3058 2937 23 0 0 0 chr9 10862670 10862693 -106999934 + AT_rich Low_complexity Low_complexity 1 23 0 261 233 14 14 chr9 10862809 10862882 -106999745 + (TA)n Simple_repeat Simple_repeat 2 74 0 21 82 0 0 chr9 10864825 10864874 -106997753 + AT_rich Low_complexity Low_complexity 1 49 0 1793 117 50 25 chr9 10864895 10865178 -106997449 + AluSg SINE Alu 4 293 -17 312 274 32 42 chr9 10865752 10865847 -106996780 + MIR SINE MIR 86 179 -83 31 26 0 0 chr9 10865920 10865958 -106996669 + AT_rich Low_complexity Low_complexity 1 38 0 2499 170 33 6 chr9 10866027 10866514 -106996113 + L1MA4A LINE L1 5479 5978 -325 335 262 0 57 chr9 10866535 10866657 -106995970 + L1PB4 LINE L1 5941 6055 -101 269 320 41 10 chr9 10866675 10866772 -106995855 - MIR SINE MIR -71 191 92 21 82 0 0 chr9 10867141 10867190 -106995437 + AT_rich Low_complexity Low_complexity 1 49 0 7699 19 1 1 chr9 10868083 10869308 -106993319 + L1PA2 LINE L1 4931 6155 0 21 0 0 0 chr9 10870133 10870154 -106992473 + AT_rich Low_complexity Low_complexity 1 21 0 314 381 14 14 chr9 10872257 10872396 -106990231 - MIR3 SINE MIR -66 142 4 228 185 37 0 chr9 10873086 10873140 -106989487 + L1MC4 LINE L1 6648 6703 -1339 209 171 0 0 chr9 10873447 10873482 -106989145 + (CA)n Simple_repeat Simple_repeat 2 36 0 258 32 0 0 chr9 10876680 10876711 -106985916 + (T)n Simple_repeat Simple_repeat 1 31 0 185 105 0 26 chr9 10878259 10878297 -106984330 + (TG)n Simple_repeat Simple_repeat 2 38 0 204 288 111 9 chr9 10878312 10878420 -106984207 - MIR SINE MIR -63 145 34 310 284 41 58 chr9 10878843 10879049 -106983578 - MIR SINE MIR -39 223 20 254 29 0 0 chr9 10879277 10879311 -106983316 + L1PA6 LINE L1 6117 6150 -4 5814 77 25 7 chr9 10879313 10880531 -106982096 + SVA Other Other 31 1385 -1 25 51 0 0 chr9 10880536 10880575 -106982052 + AT_rich Low_complexity Low_complexity 1 39 0 403 269 99 57 chr9 10881737 10881949 -106980678 + MIR SINE MIR 41 261 -1 5279 204 35 22 chr9 10882446 10884233 -106978394 - L1M2 LINE L1 -511 5801 3986 249 108 0 0 chr9 10885081 10885118 -106977509 + (CA)n Simple_repeat Simple_repeat 2 38 0 793 267 141 20 chr9 10887436 10888081 -106974546 - L1MB7 LINE L1 -7 6155 5419 3633 220 64 3 chr9 10888084 10889149 -106973478 + L1MA9 LINE L1 3205 4334 -1812 6506 83 28 23 chr9 10889173 10890099 -106972528 - L1PA7 LINE L1 -4 6150 5226 30 59 0 0 chr9 10890111 10890162 -106972465 + AT_rich Low_complexity Low_complexity 1 51 0 513 147 20 0 chr9 10890201 10890303 -106972324 - L1MB4 LINE L1 0 6180 6077 4090 207 48 17 chr9 10890347 10891886 -106970741 + L1MA9 LINE L1 4326 5927 -385 2280 106 3 0 chr9 10891889 10892192 -106970435 - AluSx SINE Alu -8 304 1 272 326 7 50 chr9 10892435 10892491 -106970136 + L2 LINE L2 1773 1830 -1484 1849 166 0 3 chr9 10892491 10892793 -106969834 - AluSx SINE Alu -11 301 1 272 326 7 50 chr9 10892793 10892877 -106969750 + L2 LINE L2 1830 1907 -1407 1182 200 9 9 chr9 10892968 10893188 -106969439 + AluJo SINE Alu 1 220 -92 248 189 0 0 chr9 10893188 10893241 -106969386 + FAM SINE Alu 127 179 0 609 219 175 32 chr9 10893964 10894302 -106968325 + L1ME2 LINE L1 5765 6150 -14 909 144 17 58 chr9 10894949 10895122 -106967505 - FRAM SINE Alu -13 163 1 767 158 25 0 chr9 10896209 10896329 -106966298 - FLAM_C SINE Alu -20 123 1 2214 120 0 7 chr9 10896380 10896680 -106965947 + AluSx SINE Alu 1 298 -14 1933 123 42 7 chr9 10896743 10897027 -106965600 + AluSx SINE Alu 9 302 -10 647 256 106 45 chr9 10897080 10897326 -106965301 - MIR SINE MIR -1 261 1 372 354 101 13 chr9 10897330 10897567 -106965060 + L2 LINE L2 2807 3064 -208 192 346 37 12 chr9 10897651 10897732 -106964895 + L2 LINE L2 3190 3272 0 1376 174 27 15 chr9 10898229 10898571 -106964056 + Tigger3(Golem) DNA MER2_type 48 3029 0 425 255 47 65 chr9 10898847 10899020 -106963607 - MIR SINE MIR -70 138 8 2504 78 3 0 chr9 10899050 10899359 -106963268 + AluSp SINE Alu 2 311 -2 5975 77 5 2 chr9 10900556 10901357 -106961270 + L1PA7 LINE L1 5341 6143 -11 326 299 36 28 chr9 10901578 10901829 -106960798 + L1M4 LINE L1 3875 4127 -2019 457 317 67 18 chr9 10902323 10902487 -106960140 + MIR3 SINE MIR 30 201 -7 1753 189 42 3 chr9 10902537 10902871 -106959756 - MER7A DNA MER2_type 0 346 2 1113 170 13 45 chr9 10903534 10903697 -106958930 - MER20 DNA MER1_type -2 217 61 2067 122 24 10 chr9 10903697 10903991 -106958636 + AluSx SINE Alu 1 298 -14 1113 170 13 45 chr9 10903991 10904051 -106958576 - MER20 DNA MER1_type -158 61 1 305 339 36 9 chr9 10906112 10906224 -106956403 + L1ME LINE L1 3 117 -5953 360 304 132 67 chr9 10907200 10907542 -106955085 + L1M2 LINE L1 611 974 -5875 347 265 145 8 chr9 10908383 10908500 -106954127 + MIR3 SINE MIR 30 162 -46 198 329 13 25 chr9 10909597 10909676 -106952951 + L2 LINE L2 3004 3081 -232 958 128 20 13 chr9 10909790 10909939 -106952688 - AluJo SINE Alu -159 153 4 1547 104 5 0 chr9 10909962 10910174 -106952453 + AluSg1 SINE Alu 1 213 -96 2498 51 0 0 chr9 10910174 10910466 -106952161 + AluSc SINE Alu 1 293 -16 577 75 25 0 chr9 10910466 10910546 -106952081 + AluSg1 SINE Alu 205 286 -26 389 250 36 0 chr9 10910553 10910637 -106951990 + L2 LINE L2 3203 3289 -24 181 360 30 30 chr9 10914907 10915007 -106947620 + MER5A DNA MER1_type 69 168 -21 21 0 0 0 chr9 10915303 10915324 -106947303 + AT_rich Low_complexity Low_complexity 1 21 0 214 247 14 27 chr9 10916163 10916236 -106946391 + T-rich Low_complexity Low_complexity 6 77 0 675 233 7 20 chr9 10916651 10916801 -106945826 + MER5A DNA MER1_type 5 152 -37 359 217 12 12 chr9 10916911 10916994 -106945633 - MLT1K LTR MaLR -338 250 168 495 0 0 0 chr9 10917054 10917109 -106945518 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2172 98 0 16 chr9 10917996 10918301 -106944326 - AluSq SINE Alu -13 300 1 261 0 0 0 chr9 10918726 10918755 -106943872 + (TA)n Simple_repeat Simple_repeat 1 29 0 2189 98 0 0 chr9 10918755 10919032 -106943595 - AluSp SINE Alu -7 306 30 476 152 0 0 chr9 10919784 10919850 -106942777 - AluJo SINE Alu -120 192 127 1693 158 50 4 chr9 10919860 10920020 -106942607 - AluJb SINE Alu -20 292 112 186 43 0 0 chr9 10920020 10920043 -106942584 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1693 158 50 4 chr9 10920043 10920161 -106942466 - AluJb SINE Alu -200 112 1 1993 90 14 31 chr9 10920433 10920723 -106941904 + AluY SINE Alu 1 285 -26 775 215 108 0 chr9 10920822 10921036 -106941591 - L1ME2 LINE L1 -10 6154 5918 1097 209 5 5 chr9 10921086 10921287 -106941340 - AluJo SINE Alu -92 220 20 239 213 150 0 chr9 10921302 10921382 -106941245 - L1ME2 LINE L1 -279 5885 5794 215 341 111 14 chr9 10921382 10921590 -106941037 + L2 LINE L2 1742 1969 -1345 233 315 143 19 chr9 10921590 10921806 -106940821 + L2 LINE L2 2328 2570 -744 194 348 11 11 chr9 10921958 10922047 -106940580 - MIR SINE MIR -63 145 57 2179 137 0 0 chr9 10923109 10923402 -106939225 + AluSx SINE Alu 3 295 -17 1416 188 72 51 chr9 10923662 10923955 -106938672 - AluJo SINE Alu -13 299 1 309 312 115 13 chr9 10924156 10924313 -106938314 + MIR SINE MIR 80 252 -10 445 287 44 48 chr9 10924314 10924579 -106938048 - L1ME2 LINE L1 -456 5665 5443 662 179 0 0 chr9 10924602 10924714 -106937913 - AluJb SINE Alu -81 231 120 340 287 41 26 chr9 10924828 10925023 -106937604 + L1MA9 LINE L1 5987 6184 -128 26 0 0 0 chr9 10925038 10925064 -106937563 + AT_rich Low_complexity Low_complexity 1 26 0 304 374 39 0 chr9 10925180 10925335 -106937292 - MIR SINE MIR -82 180 20 30 93 0 0 chr9 10925659 10925745 -106936882 + AT_rich Low_complexity Low_complexity 1 86 0 193 128 43 0 chr9 10925774 10925821 -106936806 + (TA)n Simple_repeat Simple_repeat 2 50 0 353 341 17 34 chr9 10926422 10926598 -106936029 + HAL1b LINE L1 330 502 -846 22 35 0 0 chr9 10926738 10926767 -106935860 + AT_rich Low_complexity Low_complexity 1 29 0 1325 171 98 15 chr9 10926940 10927214 -106935413 + AluSx SINE Alu 1 297 -15 373 181 21 0 chr9 10927214 10927308 -106935319 + GA-rich Low_complexity Low_complexity 1 96 0 31 26 0 0 chr9 10927504 10927542 -106935085 + AT_rich Low_complexity Low_complexity 1 38 0 415 228 87 0 chr9 10928584 10928676 -106933951 - MIR SINE MIR -78 184 85 195 169 43 26 chr9 10929111 10929161 -106933466 - MIR SINE MIR -57 151 105 181 171 0 49 chr9 10929314 10929355 -106933272 + MIR SINE MIR 39 77 -131 196 128 77 26 chr9 10930168 10930207 -106932420 + L2 LINE L2 3230 3270 -2 331 284 127 22 chr9 10930253 10930387 -106932240 - MIR SINE MIR -70 192 45 258 32 0 0 chr9 10930604 10930635 -106931992 + (TG)n Simple_repeat Simple_repeat 1 31 0 1367 94 5 11 chr9 10930736 10930927 -106931700 + AluY SINE Alu 111 300 -11 2474 60 0 0 chr9 10931062 10931360 -106931267 + AluY SINE Alu 4 301 -10 412 196 143 58 chr9 10931371 10931435 -106931192 + L2 LINE L2 3109 3166 -147 695 206 0 22 chr9 10931435 10931571 -106931056 - FLAM_A SINE Alu 0 133 1 412 196 143 58 chr9 10931571 10931695 -106930932 + L2 LINE L2 3166 3313 0 921 167 0 42 chr9 10932400 10932568 -106930059 + MER20 DNA MER1_type 59 219 0 1711 178 7 26 chr9 10933085 10933389 -106929238 - AluJo SINE Alu -14 298 1 909 188 48 0 chr9 10933417 10933582 -106929045 + AluJb SINE Alu 127 299 -13 1085 237 16 0 chr9 10933721 10933974 -106928653 - MER58 DNA MER1_type -2163 257 1 27 29 0 0 chr9 10934478 10934512 -106928115 + AT_rich Low_complexity Low_complexity 1 34 0 2385 88 0 3 chr9 10934603 10934899 -106927728 + AluSx SINE Alu 1 295 -17 1833 174 0 20 chr9 10935025 10935324 -106927303 + AluJo SINE Alu 1 293 -19 202 271 172 16 chr9 10935839 10935961 -106926666 - MIR3 SINE MIR -62 146 6 248 333 26 26 chr9 10936278 10936395 -106926232 + L2 LINE L2 3134 3250 -22 383 338 69 61 chr9 10936736 10937097 -106925530 - L2 LINE L2 -12 3260 2897 431 244 61 61 chr9 10937273 10937404 -106925223 - MER20 DNA MER1_type -88 131 1 27 0 0 26 chr9 10937475 10937493 -106925134 + AT_rich Low_complexity Low_complexity 1 18 -19 3158 69 16 5 chr9 10937493 10937940 -106924687 + L1PA7 LINE L1 5700 6151 -3 27 0 0 26 chr9 10937940 10937959 -106924668 + AT_rich Low_complexity Low_complexity 18 37 0 278 360 205 5 chr9 10938079 10938279 -106924348 + MIR SINE MIR 5 244 -18 25 31 0 0 chr9 10938736 10938768 -106923859 + AT_rich Low_complexity Low_complexity 1 32 0 27 49 0 0 chr9 10939514 10939555 -106923072 + AT_rich Low_complexity Low_complexity 1 41 0 358 306 49 35 chr9 10941430 10941574 -106921053 - L2 LINE L2 0 3313 3168 189 197 155 28 chr9 10942148 10942219 -106920408 - L2 LINE L2 -4 3268 3189 21 36 0 0 chr9 10942507 10942535 -106920092 + AT_rich Low_complexity Low_complexity 1 28 0 6799 74 6 0 chr9 10943021 10944291 -106918336 + L1PA8 LINE L1 4893 6171 -1 212 410 38 0 chr9 10944454 10944559 -106918068 + MIR SINE MIR 52 160 -102 231 88 0 0 chr9 10944855 10944889 -106917738 + (TA)n Simple_repeat Simple_repeat 2 35 0 1093 176 19 37 chr9 10945716 10945762 -106916865 + AluJb SINE Alu 85 130 -182 312 27 0 0 chr9 10945762 10945799 -106916828 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 1093 176 19 37 chr9 10945799 10945968 -106916659 + AluJb SINE Alu 130 296 -16 26 64 0 0 chr9 10946752 10946799 -106915828 + AT_rich Low_complexity Low_complexity 1 47 0 378 250 82 41 chr9 10947251 10947447 -106915180 + L1MC5 LINE L1 7726 7929 -32 205 167 0 0 chr9 10947731 10947767 -106914860 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr9 10947858 10947880 -106914747 + AT_rich Low_complexity Low_complexity 1 22 0 250 263 21 21 chr9 10948124 10948219 -106914408 + A-rich Low_complexity Low_complexity 5 99 0 2269 64 0 0 chr9 10948223 10948549 -106914078 + AluY SINE Alu 1 326 0 4976 185 31 24 chr9 10948561 10950204 -106912423 + L1PB3 LINE L1 4143 5803 -351 180 77 0 0 chr9 10950204 10950230 -106912397 + (CA)n Simple_repeat Simple_repeat 2 27 0 4976 185 31 24 chr9 10950230 10950576 -106912051 + L1PB3 LINE L1 5803 6145 -9 * 5283 183 39 5 chr9 10950575 10951958 -106910669 - L1M1 LINE L1 -705 7019 5606 372 258 0 0 chr9 10951978 10952067 -106910560 - L1M1 LINE L1 -2759 4806 4718 * 3837 118 17 0 chr9 10952057 10952686 -106909941 - L1P LINE L1 -732 5422 4781 3010 198 22 14 chr9 10952677 10953724 -106908903 - L1M1 LINE L1 -3233 4332 3274 * 1558 117 0 25 chr9 10953727 10953967 -106908660 + L1PA8A LINE L1 5884 6117 -14 9334 194 19 41 chr9 10953988 10954100 -106908527 - L1M1 LINE L1 -5687 1878 1765 369 0 0 0 chr9 10954100 10954141 -106908486 + (TC)n Simple_repeat Simple_repeat 2 42 0 9334 194 19 41 chr9 10954141 10954219 -106908408 - L1M1 LINE L1 -5800 1765 1687 2464 70 0 0 chr9 10954219 10954521 -106908106 + AluY SINE Alu 1 302 -9 9334 194 19 41 chr9 10954521 10956227 -106906400 - L1M1 LINE L1 -5878 1687 22 415 301 17 46 chr9 10957127 10957300 -106905327 + L2 LINE L2 3146 3313 0 6794 73 8 2 chr9 10957849 10958995 -106903632 - L1PA7 LINE L1 -2 6152 5004 4862 110 7 1 chr9 10958995 10959738 -106902889 + L1PA7 LINE L1 4250 4996 -1150 219 289 91 25 chr9 10960550 10960671 -106901956 - MIR SINE MIR -46 216 88 21 0 0 0 chr9 10960848 10960869 -106901758 + AT_rich Low_complexity Low_complexity 1 21 0 211 293 0 0 chr9 10961672 10961730 -106900897 - MIR SINE MIR -21 241 184 27 29 0 0 chr9 10962148 10962182 -106900445 + AT_rich Low_complexity Low_complexity 1 34 0 25 31 0 0 chr9 10962522 10962554 -106900073 + AT_rich Low_complexity Low_complexity 1 32 0 2450 125 0 0 chr9 10962635 10963082 -106899545 - L1P4 LINE L1 -558 5608 5159 2031 156 17 3 chr9 10963082 10963440 -106899187 + L1PA16 LINE L1 5793 6156 -10 352 311 42 17 chr9 10963495 10963614 -106899013 + L2 LINE L2 3149 3270 -2 2736 0 0 7 chr9 10964885 10965188 -106897439 + AluYa5 SINE Alu 1 301 -10 587 76 0 0 chr9 10965369 10965448 -106897179 - L1PA8 LINE L1 -224 5948 5870 25 51 0 0 chr9 10966012 10966051 -106896576 + AT_rich Low_complexity Low_complexity 1 39 0 6000 145 35 5 chr9 10966545 10967636 -106894991 - L1MA2 LINE L1 0 6304 5184 577 257 22 34 chr9 10967971 10968150 -106894477 - MER5B DNA MER1_type -1 177 1 22 0 0 0 chr9 10968417 10968439 -106894188 + AT_rich Low_complexity Low_complexity 1 22 0 202 291 8 94 chr9 10968959 10969086 -106893541 - L3 LINE CR1 -1 1576 1461 183 42 0 0 chr9 10969327 10969351 -106893276 + (A)n Simple_repeat Simple_repeat 1 24 0 640 297 28 73 chr9 10969701 10969968 -106892659 - L2 LINE L2 -2 3311 3060 2548 52 0 0 chr9 10969968 10970275 -106892352 + AluY SINE Alu 1 307 -4 640 297 28 73 chr9 10970275 10970334 -106892293 - L2 LINE L2 -253 3060 3000 390 295 3 48 chr9 10970765 10970930 -106891697 - MIR SINE MIR -65 143 19 1392 202 50 106 chr9 10972344 10972573 -106890054 - L1MD3 LINE L1 -1 7994 7754 1218 87 49 0 chr9 10972573 10972758 -106889869 + L1MA3 LINE L1 6112 6305 0 1392 202 50 106 chr9 10972758 10973048 -106889579 - L1MD3 LINE L1 -241 7754 7504 1210 35 0 0 chr9 10973048 10973193 -106889434 - L1P LINE L1 -1969 4177 4033 8876 54 7 0 chr9 10973193 10975089 -106887538 + L1PA5 LINE L1 4253 6153 -1 378 278 28 9 chr9 10975109 10975217 -106887410 - L1MD3 LINE L1 -482 7513 7404 2618 244 77 112 chr9 10975218 10975600 -106887027 - L1MD3 LINE L1 -718 7277 6883 312 27 0 0 chr9 10975600 10975637 -106886990 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 2618 244 77 112 chr9 10975637 10976709 -106885918 - L1MD3 LINE L1 -1112 6883 5775 2295 178 29 2 chr9 10976709 10977158 -106885469 - L1MA4 LINE L1 -6 6294 5834 2618 244 77 112 chr9 10977158 10977554 -106885073 - L1MD3 LINE L1 -2220 5775 5491 1796 143 0 41 chr9 10977554 10977847 -106884780 - AluSg SINE Alu -29 281 1 2618 244 77 112 chr9 10977847 10977902 -106884725 - L1MD3 LINE L1 -2504 5491 5436 243 0 0 0 chr9 10977986 10978013 -106884614 + (TG)n Simple_repeat Simple_repeat 2 28 0 249 300 0 0 chr9 10978029 10978119 -106884508 + L1MC4 LINE L1 6614 6703 -1339 243 152 0 0 chr9 10978139 10978185 -106884442 - LTR66 LTR ERVL -171 439 394 241 152 0 0 chr9 10978145 10978191 -106884436 + LTR66 LTR ERVL 394 439 -171 * 183 42 0 0 chr9 10979257 10979281 -106883346 + (TTTTTG)n Simple_repeat Simple_repeat 6 29 0 249 33 0 0 chr9 10979306 10979336 -106883291 + (TG)n Simple_repeat Simple_repeat 1 30 0 782 260 48 18 chr9 10979668 10980004 -106882623 + MLT1I LTR MaLR 6 405 -4 23 54 0 0 chr9 10980388 10980425 -106882202 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr9 10980580 10980620 -106882007 + AT_rich Low_complexity Low_complexity 1 40 0 28 48 0 0 chr9 10981675 10981717 -106880910 + AT_rich Low_complexity Low_complexity 1 42 0 4902 200 22 7 chr9 10981717 10983643 -106878984 - L1MB1 LINE L1 -6 6162 4209 236 234 13 13 chr9 10983729 10983806 -106878821 + (TA)n Simple_repeat Simple_repeat 1 77 0 2406 68 0 0 chr9 10984669 10984965 -106877662 - AluY SINE Alu -15 296 1 23 0 0 0 chr9 10984973 10984996 -106877631 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr9 10985391 10985416 -106877211 + (A)n Simple_repeat Simple_repeat 1 25 0 13268 151 25 29 chr9 10985702 10988108 -106874519 + Tigger1 DNA MER2_type 24 2418 0 24 67 0 0 chr9 10988961 10989006 -106873621 + AT_rich Low_complexity Low_complexity 1 45 0 219 88 0 0 chr9 10989723 10989757 -106872870 + (TA)n Simple_repeat Simple_repeat 1 34 0 363 121 0 0 chr9 10989760 10989818 -106872809 + (GA)n Simple_repeat Simple_repeat 2 59 0 648 276 26 49 chr9 10990025 10990289 -106872338 - MLT1B LTR MaLR -4 386 129 21 36 0 0 chr9 10991761 10991789 -106870838 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 10991861 10991891 -106870736 + (TG)n Simple_repeat Simple_repeat 2 31 0 231 250 80 11 chr9 10991956 10992044 -106870583 + Charlie2 DNA MER1_type 173 266 -2596 783 250 14 10 chr9 10992049 10992257 -106870370 - MER3 DNA MER1_type 0 209 1 404 274 94 18 chr9 10992316 10992645 -106869982 + Charlie2 DNA MER1_type 2478 2831 -31 563 273 105 43 chr9 10994343 10994552 -106868075 + MIR SINE MIR 13 234 -28 4368 66 2 0 chr9 10995301 10995864 -106866763 + L1PA7 LINE L1 5591 6154 0 2538 84 11 0 chr9 10995864 10996207 -106866420 + L1PA8 LINE L1 5815 6165 -7 1228 264 53 57 chr9 10996600 10997088 -106865539 + L1MC4 LINE L1 6745 7232 -810 1981 146 0 0 chr9 10997088 10997383 -106865244 - AluSx SINE Alu -17 295 1 1228 264 53 57 chr9 10997383 10997436 -106865191 + L1MC4 LINE L1 7232 7284 -758 375 273 1 10 chr9 10998009 10998121 -106864506 + L1MC4 LINE L1 7224 7396 -473 233 29 29 0 chr9 10998575 10998609 -106864018 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 294 97 43 21 chr9 10998695 10998788 -106863839 + (TA)n Simple_repeat Simple_repeat 1 95 0 1517 191 62 76 chr9 10999036 10999459 -106863168 + MSTB1 LTR MaLR 16 432 0 21 0 0 0 chr9 10999724 10999745 -106862882 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 10999884 10999905 -106862722 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr9 11000106 11000139 -106862488 + AT_rich Low_complexity Low_complexity 1 33 0 31 0 0 0 chr9 11000510 11000541 -106862086 + AT_rich Low_complexity Low_complexity 1 31 0 180 360 30 30 chr9 11002229 11002329 -106860298 + MER5A DNA MER1_type 69 168 -21 21 0 0 0 chr9 11002625 11002646 -106859981 + AT_rich Low_complexity Low_complexity 1 21 0 214 247 14 27 chr9 11003485 11003558 -106859069 + T-rich Low_complexity Low_complexity 6 77 0 659 233 7 20 chr9 11003970 11004120 -106858507 + MER5A DNA MER1_type 5 152 -37 368 283 104 40 chr9 11004230 11004373 -106858254 - MLT1K LTR MaLR -338 250 93 531 0 0 0 chr9 11004373 11004432 -106858195 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 368 283 104 40 chr9 11004432 11004461 -106858166 - MLT1K LTR MaLR -495 93 67 2028 137 0 0 chr9 11005319 11005618 -106857009 - AluSx SINE Alu -13 299 1 1333 224 34 31 chr9 11005630 11006046 -106856581 + LTR52 LTR ERVL 3 419 -2 1775 157 10 7 chr9 11006160 11006459 -106856168 - AluSx SINE Alu -10 302 3 23 54 0 0 chr9 11007666 11007703 -106854924 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr9 11007730 11007782 -106854845 + AT_rich Low_complexity Low_complexity 1 52 0 1347 112 4 13 chr9 11008854 11009174 -106853453 - AluSp SINE Alu -15 298 11 602 227 0 0 chr9 11009186 11009318 -106853309 - FLAM_C SINE Alu -1 132 1 23 54 0 0 chr9 11009411 11009448 -106853179 + AT_rich Low_complexity Low_complexity 1 37 0 432 82 0 0 chr9 11009613 11009674 -106852953 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 36 0 0 chr9 11012625 11012653 -106849974 + AT_rich Low_complexity Low_complexity 1 28 0 200 143 24 0 chr9 11013819 11013861 -106848766 + (TA)n Simple_repeat Simple_repeat 1 43 0 453 99 4 0 chr9 11016415 11016485 -106846142 - L1PA16 LINE L1 -1 6155 6084 600 305 106 7 chr9 11016486 11016768 -106845859 - LTR16C LTR ERVL -5 486 177 1486 215 0 16 chr9 11017185 11017497 -106845130 + AluJo SINE Alu 1 307 -5 1329 220 87 32 chr9 11017530 11017876 -106844751 + MLT1A1 LTR MaLR 1 365 0 2386 67 0 6 chr9 11020780 11021093 -106841534 - AluY SINE Alu 0 311 1 350 305 69 93 chr9 11022110 11022474 -106840153 + L1ME4a LINE L1 5530 5884 -237 229 227 15 36 chr9 11023506 11023593 -106839034 + CT-rich Low_complexity Low_complexity 1 134 0 558 271 40 13 chr9 11024031 11024182 -106838445 + MER45A DNA AcHobo 1 155 -23 248 170 75 0 chr9 11024663 11024716 -106837911 + MIR SINE MIR 69 125 -137 * 277 276 138 46 chr9 11024701 11024897 -106837730 + L2 LINE L2 3100 3313 0 335 222 172 0 chr9 11025455 11025554 -106837073 - MER3 DNA MER1_type -13 196 81 7587 22 1 7 chr9 11025685 11026711 -106835916 + L1PA3 LINE L1 5135 6155 0 781 226 0 6 chr9 11026879 11027043 -106835584 - MER3 DNA MER1_type -46 163 1 213 272 154 62 chr9 11027242 11027437 -106835190 + MIR SINE MIR 1 213 -49 262 320 0 0 chr9 11027605 11027680 -106834947 + L2 LINE L2 3235 3309 -4 252 277 85 0 chr9 11027857 11027951 -106834676 + MIR3 SINE MIR 100 201 -7 240 335 61 30 chr9 11029274 11029438 -106833189 + MLT1K LTR MaLR 160 328 -260 22 0 0 0 chr9 11029694 11029716 -106832911 + AT_rich Low_complexity Low_complexity 1 22 0 219 167 24 0 chr9 11029771 11029813 -106832814 + (TTG)n Simple_repeat Simple_repeat 2 44 0 195 42 0 0 chr9 11029964 11029988 -106832639 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1364 183 22 51 chr9 11030137 11030448 -106832179 - AluJb SINE Alu -10 302 1 21 71 0 0 chr9 11031374 11031416 -106831211 + AT_rich Low_complexity Low_complexity 1 42 0 202 263 26 13 chr9 11031946 11032022 -106830605 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 723 303 87 16 chr9 11032135 11032571 -106830056 - L1ME3A LINE L1 -225 5945 5479 462 271 94 39 chr9 11032683 11033044 -106829583 - L1ME3A LINE L1 -856 5290 4910 186 49 49 24 chr9 11034050 11034091 -106828536 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5450 27 0 0 chr9 11034102 11034741 -106827886 - L1PA4 LINE L1 -3 6152 5514 4533 39 5 0 chr9 11034741 11035412 -106827215 + L1PA4 LINE L1 4827 5499 -656 25 0 0 0 chr9 11035546 11035571 -106827056 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr9 11035639 11035666 -106826961 + (TC)n Simple_repeat Simple_repeat 2 28 0 234 105 0 0 chr9 11036694 11036732 -106825895 + (CA)n Simple_repeat Simple_repeat 1 38 0 347 269 67 37 chr9 11037590 11037724 -106824903 + MIR SINE MIR 6 143 -119 1997 149 3 20 chr9 11037786 11038129 -106824498 - MER1B DNA MER1_type 0 337 1 1303 159 10 0 chr9 11039626 11039833 -106822794 + L1PA13 LINE L1 1 209 -6578 637 136 0 0 chr9 11039978 11040089 -106822538 + L1PA8 LINE L1 6022 6171 -1 216 97 0 0 chr9 11040331 11040362 -106822265 + (TG)n Simple_repeat Simple_repeat 2 32 0 185 237 68 17 chr9 11040584 11040643 -106821984 + MIR SINE MIR 85 146 -62 243 141 31 62 chr9 11040929 11040993 -106821634 + LTR66 LTR ERVL 402 463 -147 218 313 0 0 chr9 11041886 11041953 -106820674 + CT-rich Low_complexity Low_complexity 2 68 0 719 238 18 0 chr9 11043632 11043800 -106818827 + MLT1D LTR MaLR 335 505 0 2262 100 13 0 chr9 11044044 11044343 -106818284 - AluSx SINE Alu -9 303 1 21 0 0 0 chr9 11044489 11044510 -106818117 + AT_rich Low_complexity Low_complexity 1 21 0 841 109 7 43 chr9 11044853 11044991 -106817636 - L1PA16 LINE L1 -1 6165 6033 189 0 0 0 chr9 11044994 11045015 -106817612 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1420 111 5 0 chr9 11045025 11045257 -106817370 - L1PA8 LINE L1 0 6172 5955 947 85 0 8 chr9 11045257 11045386 -106817241 + L1PA8 LINE L1 5796 5923 -208 * 4591 128 46 7 chr9 11045381 11046139 -106816488 - L1PA16 LINE L1 -125 6041 5254 21 0 0 0 chr9 11046820 11046841 -106815786 + AT_rich Low_complexity Low_complexity 1 21 0 698 332 12 16 chr9 11047112 11047368 -106815259 + MIR SINE MIR 2 256 -6 2243 50 0 84 chr9 11049588 11049911 -106812716 - AluY SINE Alu -15 296 1 207 100 0 0 chr9 11050316 11050346 -106812281 + (A)n Simple_repeat Simple_repeat 1 30 0 26 64 0 0 chr9 11051331 11051378 -106811249 + AT_rich Low_complexity Low_complexity 1 47 0 229 89 44 0 chr9 11051838 11051883 -106810744 + (CA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr9 11053587 11053608 -106809019 + AT_rich Low_complexity Low_complexity 1 21 0 264 30 0 0 chr9 11054561 11054594 -106808033 + (CA)n Simple_repeat Simple_repeat 2 34 0 446 284 46 46 chr9 11054876 11055094 -106807533 + L2 LINE L2 3000 3217 -96 21 71 0 0 chr9 11056042 11056084 -106806543 + AT_rich Low_complexity Low_complexity 1 42 0 252 253 113 27 chr9 11056441 11056457 -106806170 - L1MA10 LINE L1 -3 6331 6316 1281 211 64 36 chr9 11056457 11056845 -106805782 - L1ME2 LINE L1 -8 6156 5758 39 0 0 0 chr9 11057025 11057064 -106805563 + AT_rich Low_complexity Low_complexity 1 39 0 226 211 14 56 chr9 11057200 11057271 -106805356 + MLT1J LTR MaLR 3 70 -472 519 237 137 80 chr9 11057954 11058203 -106804424 + MLT1F1 LTR MaLR 278 565 -2 230 250 0 0 chr9 11058692 11058744 -106803883 + LTR30 LTR ERV1 1 52 -670 621 180 41 95 chr9 11058744 11059009 -106803618 + LTR12 LTR ERV1 55 258 -456 248 271 8 78 chr9 11059009 11059138 -106803489 + LTR30 LTR ERV1 524 643 -79 707 100 0 0 chr9 11059140 11059240 -106803387 + LTR12 LTR ERV1 615 714 0 421 255 11 0 chr9 11059367 11059461 -106803166 - MER5A DNA MER1_type -86 103 9 32 0 0 0 chr9 11061777 11061809 -106800818 + AT_rich Low_complexity Low_complexity 1 32 0 216 325 81 31 chr9 11062205 11062365 -106800262 - MIR SINE MIR -58 204 37 21 36 0 0 chr9 11062707 11062735 -106799892 + AT_rich Low_complexity Low_complexity 1 28 0 183 123 0 53 chr9 11063204 11063261 -106799366 + (TA)n Simple_repeat Simple_repeat 2 55 0 259 316 73 37 chr9 11064658 11064794 -106797833 + MIR3 SINE MIR 17 157 -51 466 16 32 0 chr9 11064804 11064867 -106797760 + (TG)n Simple_repeat Simple_repeat 2 66 0 392 291 7 43 chr9 11065060 11065201 -106797426 + MLT1J LTR MaLR 24 159 -352 28 0 0 0 chr9 11067253 11067281 -106795346 + AT_rich Low_complexity Low_complexity 1 28 0 182 255 0 0 chr9 11067725 11067772 -106794855 + MER5C DNA MER1_type 159 205 -119 821 227 29 0 chr9 11069679 11069851 -106792776 + MIR SINE MIR 86 262 0 21 0 0 0 chr9 11070591 11070612 -106792015 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 11073337 11073367 -106789260 + AT_rich Low_complexity Low_complexity 1 30 0 252 239 56 0 chr9 11074176 11074247 -106788380 + MIR3 SINE MIR 120 194 -14 23 0 0 0 chr9 11074260 11074283 -106788344 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 11078342 11078366 -106784261 + (A)n Simple_repeat Simple_repeat 1 24 0 392 297 21 102 chr9 11078829 11079112 -106783515 - L1M2 LINE L1 -5720 1129 870 28 29 0 0 chr9 11079231 11079266 -106783361 + GC_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr9 11079309 11079340 -106783287 + GC_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr9 11079578 11079598 -106783029 + (TTA)n Simple_repeat Simple_repeat 2 21 0 205 182 0 0 chr9 11080762 11080795 -106781832 + polypyrimidine Low_complexity Low_complexity 2 34 0 451 269 44 76 chr9 11083006 11083255 -106779372 + LTR33 LTR ERVL 1 241 -280 1680 233 22 80 chr9 11083653 11084241 -106778386 + MLT2B3 LTR ERVL 1 554 0 1932 125 24 0 chr9 11084321 11084608 -106778019 + AluSg SINE Alu 1 294 -16 24 0 0 0 chr9 11085035 11085059 -106777568 + AT_rich Low_complexity Low_complexity 1 24 0 1374 192 43 14 chr9 11085284 11085565 -106777062 - AluJb SINE Alu -23 289 1 372 286 62 50 chr9 11085566 11085727 -106776900 - MIR SINE MIR -89 173 11 21 57 0 0 chr9 11086373 11086408 -106776219 + AT_rich Low_complexity Low_complexity 1 35 0 2015 122 10 0 chr9 11087038 11087334 -106775293 - AluSg SINE Alu -11 299 1 43 56 0 0 chr9 11088348 11088419 -106774208 + AT_rich Low_complexity Low_complexity 1 71 0 2577 151 9 14 chr9 11088795 11089225 -106773402 - MSTA LTR MaLR 0 428 1 6791 194 61 0 chr9 11089225 11090507 -106772120 - MSTA-int LTR MaLR 0 1651 292 341 359 23 8 chr9 11092722 11092853 -106769774 + MIR SINE MIR 2 134 -128 302 232 172 10 chr9 11092898 11092997 -106769630 + MIR SINE MIR 114 228 -34 218 347 163 0 chr9 11094181 11094279 -106768348 + MIR SINE MIR 75 188 -74 22 70 0 0 chr9 11094488 11094531 -106768096 + AT_rich Low_complexity Low_complexity 1 43 0 304 272 64 56 chr9 11094808 11094933 -106767694 + MIR SINE MIR 64 189 -73 22 0 0 0 chr9 11095054 11095076 -106767551 + AT_rich Low_complexity Low_complexity 1 22 0 248 211 39 102 chr9 11095651 11095779 -106766848 + MLT1L LTR MaLR 492 611 -4 23 0 0 0 chr9 11095819 11095842 -106766785 + AT_rich Low_complexity Low_complexity 1 23 0 210 143 0 0 chr9 11096116 11096151 -106766476 + (CA)n Simple_repeat Simple_repeat 2 36 0 222 381 17 8 chr9 11096460 11096578 -106766049 - MIR3 SINE MIR 0 208 90 2102 113 0 0 chr9 11096696 11097005 -106765622 + AluSx SINE Alu 1 309 0 256 254 0 15 chr9 11098052 11098119 -106764508 - MLT1K LTR MaLR -18 570 505 261 0 0 0 chr9 11098216 11098245 -106764382 + (A)n Simple_repeat Simple_repeat 1 29 0 364 313 61 0 chr9 11099393 11099540 -106763087 - MIR SINE MIR -16 246 91 27 0 0 0 chr9 11099914 11099941 -106762686 + AT_rich Low_complexity Low_complexity 1 27 0 560 287 37 53 chr9 11099955 11100255 -106762372 + LTR16B LTR ERVL 11 305 -159 2316 81 7 3 chr9 11100472 11100782 -106761845 + AluY SINE Alu 1 311 0 279 287 121 67 chr9 11100820 11101448 -106761179 - L1M4 LINE L1 -1088 5058 4397 255 61 0 0 chr9 11102826 11102859 -106759768 + (TG)n Simple_repeat Simple_repeat 2 34 0 358 286 48 24 chr9 11102878 11103004 -106759623 - MIR SINE MIR -78 184 56 360 200 40 0 chr9 11103116 11103191 -106759436 - L2 LINE L2 0 3313 3236 261 372 84 5 chr9 11103334 11103525 -106759102 - L2 LINE L2 -358 2956 2751 1208 251 48 59 chr9 11103916 11104411 -106758216 + MLT1D LTR MaLR 1 490 -15 234 289 109 55 chr9 11104423 11104551 -106758076 + L2 LINE L2 3177 3311 -2 666 373 90 9 chr9 11104559 11105109 -106757518 + L2 LINE L2 2716 3309 -4 849 214 42 33 chr9 11105882 11106008 -106756619 - MER34 LTR ERV1 0 542 412 2012 144 129 28 chr9 11106008 11106396 -106756231 - MSTA LTR MaLR -1 427 1 849 214 42 33 chr9 11106396 11106484 -106756143 - MER34 LTR ERV1 -130 412 326 857 240 72 12 chr9 11106516 11106766 -106755861 - MER34 LTR ERV1 -277 265 1 306 0 0 0 chr9 11107012 11107046 -106755581 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1188 48 0 0 chr9 11107046 11107192 -106755435 - L1PA5 LINE L1 -18 6136 5991 259 341 148 28 chr9 11107466 11107683 -106754944 - MIR SINE MIR -1 261 19 373 313 7 21 chr9 11109136 11109280 -106753347 - MIR SINE MIR -51 211 70 293 301 26 26 chr9 11111021 11111134 -106751493 - MIR SINE MIR -60 202 90 252 302 12 12 chr9 11111754 11111840 -106750787 + (TA)n Simple_repeat Simple_repeat 1 86 0 22 70 0 0 chr9 11113497 11113540 -106749087 + AT_rich Low_complexity Low_complexity 1 43 0 259 309 95 0 chr9 11113642 11113726 -106748901 + MIR SINE MIR 41 132 -76 1363 196 21 25 chr9 11113847 11114132 -106748495 + AluJo SINE Alu 1 284 -28 380 316 26 0 chr9 11115437 11115551 -106747076 - L2 LINE L2 0 3313 3197 331 346 13 6 chr9 11116267 11116423 -106746204 - L1MC4a LINE L1 -472 7336 7180 8373 229 28 82 chr9 11116586 11119294 -106743333 + L1M2 LINE L1 1 2564 -4285 389 348 11 28 chr9 11170050 11170228 -106692399 - MER5A DNA MER1_type -6 183 9 44 46 0 0 chr9 11170375 11170440 -106692187 + AT_rich Low_complexity Low_complexity 1 65 0 382 294 62 56 chr9 11170584 11170744 -106691883 + MIR SINE MIR 28 188 -74 467 355 82 38 chr9 11170922 11171288 -106691339 + L2 LINE L2 2582 2963 -351 275 365 69 13 chr9 11171410 11171569 -106691058 + L2 LINE L2 3104 3271 -1 257 319 0 0 chr9 11172171 11172243 -106690384 - L2 LINE L2 -9 3263 3192 388 300 119 0 chr9 11172881 11173041 -106689586 - MIR SINE MIR -69 193 15 267 333 69 38 chr9 11173448 11173607 -106689020 + L3 LINE CR1 1400 1563 -14 2016 148 0 0 chr9 11175423 11175727 -106686900 + AluSx SINE Alu 1 304 -8 268 132 0 0 chr9 11176942 11176980 -106685647 - THE1B LTR MaLR 0 428 391 620 160 0 0 chr9 11176982 11177088 -106685539 + AluSg/x SINE Alu 203 308 -2 2129 120 37 3 chr9 11177104 11177429 -106685198 - THE1B LTR MaLR -28 336 1 2149 154 76 5 chr9 11177921 11178343 -106684284 - L1MA4 LINE L1 -1 6299 5848 292 379 47 18 chr9 11179328 11179497 -106683130 + LTR16A LTR ERVL 1 174 -276 440 261 18 18 chr9 11179609 11179774 -106682853 + MER115 DNA AcHobo 505 669 -24 1011 159 43 0 chr9 11180871 11181034 -106681593 + AluSg/x SINE Alu 122 291 -21 5999 90 2 18 chr9 11181066 11181951 -106680676 - L1PA7 LINE L1 -846 5300 4430 6342 72 2 0 chr9 11181951 11182786 -106679841 + L1PA7 LINE L1 5317 6153 -1 1714 84 0 4 chr9 11182808 11183034 -106679593 + AluY SINE Alu 27 251 -60 315 300 12 0 chr9 11183534 11183614 -106679013 + MIR SINE MIR 2 82 -180 24 53 0 0 chr9 11183661 11183699 -106678928 + AT_rich Low_complexity Low_complexity 1 38 0 251 300 14 0 chr9 11183906 11183976 -106678651 + MIR SINE MIR 173 243 -19 1825 158 0 16 chr9 11185062 11185373 -106677254 + AluSx SINE Alu 3 308 -4 371 279 67 36 chr9 11185484 11185649 -106676978 + MER5A DNA MER1_type 4 173 -16 341 246 0 123 chr9 11185816 11185938 -106676689 - MER5B DNA MER1_type -71 107 1 1194 244 154 60 chr9 11186002 11186515 -106676112 + MLT1E2 LTR MaLR 1 565 -61 315 0 0 0 chr9 11186515 11186550 -106676077 + (TG)n Simple_repeat Simple_repeat 2 36 0 302 0 26 0 chr9 11186586 11186624 -106676003 + (TG)n Simple_repeat Simple_repeat 2 40 0 896 121 161 15 chr9 11186655 11186854 -106675773 - L1MA3 LINE L1 -1 6304 6077 3826 71 4 0 chr9 11186971 11187478 -106675149 + L1PA7 LINE L1 5643 6151 -3 431 267 141 7 chr9 11187654 11187789 -106674838 - MIR SINE MIR -10 252 100 191 295 85 62 chr9 11187824 11187953 -106674674 - MIR SINE MIR -74 188 57 444 19 0 0 chr9 11188690 11188743 -106673884 + (GA)n Simple_repeat Simple_repeat 2 54 0 5527 40 3 0 chr9 11189289 11189959 -106672668 - L1PA4 LINE L1 -2 6153 5482 9836 32 0 2 chr9 11189959 11191152 -106671475 + L1P LINE L1 3213 4402 -1744 1362 204 11 15 chr9 11191161 11191426 -106671201 - AluJo SINE Alu -22 290 27 264 296 64 54 chr9 11191460 11191740 -106670887 + L1MC/D LINE L1 5607 5889 -1919 416 280 91 88 chr9 11191761 11192125 -106670502 - MER93b LTR ERV1 0 373 9 26 0 0 0 chr9 11192129 11192155 -106670472 + AT_rich Low_complexity Low_complexity 1 26 0 229 295 124 23 chr9 11192259 11192388 -106670239 - MIR SINE MIR -120 142 1 204 226 0 0 chr9 11192490 11192543 -106670084 + A-rich Low_complexity Low_complexity 1 53 0 2666 176 44 21 chr9 11194665 11195453 -106667174 + L1PA16 LINE L1 4699 5506 -660 1288 144 5 5 chr9 11195453 11195661 -106666966 - L1PA16 LINE L1 -283 5883 5676 1020 142 0 0 chr9 11195679 11195834 -106666793 + L1PA16 LINE L1 5495 5649 -517 1581 128 152 3 chr9 11195943 11196266 -106666361 + L1PA16 LINE L1 5813 6179 0 2501 25 0 0 chr9 11196394 11196678 -106665949 + AluY SINE Alu 24 307 -4 313 288 161 0 chr9 11197336 11197454 -106665173 + L2 LINE L2 3136 3272 0 405 54 0 0 chr9 11197859 11197915 -106664712 + (CA)n Simple_repeat Simple_repeat 1 56 0 1803 153 27 7 chr9 11199528 11199823 -106662804 - AluSx SINE Alu -11 301 1 1140 219 124 22 chr9 11200763 11201173 -106661454 - L1ME3A LINE L1 -8 6231 5780 906 114 0 0 chr9 11201174 11201297 -106661330 + AluSc SINE Alu 166 288 -21 231 114 0 0 chr9 11201297 11201332 -106661295 + (GGGAGA)n Simple_repeat Simple_repeat 2 36 0 1341 156 0 41 chr9 11201345 11201589 -106661038 + AluJb SINE Alu 79 312 0 702 266 41 12 chr9 11201589 11201833 -106660794 - L1ME3A LINE L1 -463 5776 5526 523 206 79 52 chr9 11201887 11202176 -106660451 - L1ME3A LINE L1 -681 5552 5253 2879 13 0 0 chr9 11202176 11202490 -106660137 - AluYb8 SINE Alu -4 314 1 523 206 79 52 chr9 11202490 11202571 -106660056 - L1ME3A LINE L1 -980 5253 5176 4042 55 0 2 chr9 11202572 11203080 -106659547 - L1PA7 LINE L1 -12 6142 5636 479 48 0 0 chr9 11203080 11203142 -106659485 + L1P LINE L1 3577 3638 -2508 1253 248 142 41 chr9 11203440 11203932 -106658695 + MLT1F LTR MaLR 1 542 0 987 254 104 73 chr9 11203945 11204917 -106657710 - L1ME3A LINE L1 -1304 4911 3910 21 57 0 0 chr9 11204919 11204954 -106657673 + AT_rich Low_complexity Low_complexity 1 35 0 2002 147 0 0 chr9 11205114 11205421 -106657206 + AluSx SINE Alu 3 309 -3 180 111 0 0 chr9 11205428 11205455 -106657172 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 809 257 172 67 chr9 11205455 11207338 -106655289 - L1MEc LINE L1 -2300 3915 1869 2166 232 106 13 chr9 11207578 11207690 -106654937 - L1MA5 LINE L1 -25 6275 6175 312 27 0 0 chr9 11207690 11207727 -106654900 + (TG)n Simple_repeat Simple_repeat 2 38 0 2166 232 106 13 chr9 11207727 11208803 -106653824 - L1MA5 LINE L1 -125 6175 4955 6712 44 1 1 chr9 11208803 11209624 -106653003 + L1PA5 LINE L1 5332 6152 -2 365 222 14 0 chr9 11209652 11209724 -106652903 - L1MA5 LINE L1 -1179 4967 4895 3020 217 6 42 chr9 11209728 11210534 -106652093 + L1 LINE L1 3595 4371 -1775 2123 128 7 3 chr9 11210864 11211169 -106651458 - AluSg SINE Alu -4 306 1 22 0 0 0 chr9 11211499 11211521 -106651106 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr9 11211720 11211748 -106650879 + AT_rich Low_complexity Low_complexity 1 28 0 353 376 6 19 chr9 11212318 11212480 -106650147 + L3 LINE CR1 1388 1547 -30 1281 304 20 38 chr9 11212486 11212936 -106649691 - LTR33 LTR ERVL -18 503 62 400 392 73 18 chr9 11214355 11214785 -106647842 + L2 LINE L2 2613 3068 -245 348 176 0 0 chr9 11214863 11214931 -106647696 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 207 0 0 0 chr9 11215970 11215993 -106646634 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 501 355 56 4 chr9 11217095 11217393 -106645234 - HERV16 LTR ERVL -2023 2973 2684 41323 62 4 2 chr9 11217412 11223543 -106639084 + L1PA5 LINE L1 11 6147 -7 274 380 52 10 chr9 11223567 11223954 -106638673 - HERV16 LTR ERVL -2819 2666 2264 618 382 16 13 chr9 11224010 11224382 -106638245 - HERV16 LTR ERVL -3487 2277 1905 356 391 37 14 chr9 11224584 11224878 -106637749 - HERV16 LTR ERVL -3412 1584 1284 2290 31 41 34 chr9 11225840 11226133 -106636494 - AluY SINE Alu -16 295 1 496 329 43 29 chr9 11226407 11226684 -106635943 - LTR16C LTR ERVL -18 473 193 319 322 85 43 chr9 11226880 11227829 -106634798 + L1M4 LINE L1 3553 4541 -1605 * 4423 47 0 9 chr9 11227815 11227829 -106634798 + L1PA4 LINE L1 5352 5365 -790 2181 35 0 0 chr9 11227829 11228088 -106634539 - L1PA5 LINE L1 -1 6153 5895 4423 47 0 9 chr9 11228088 11228622 -106634005 + L1PA5 LINE L1 5365 5895 -260 248 270 48 24 chr9 11228619 11228745 -106633882 + L1M4 LINE L1 4532 4660 -1486 * 5897 211 110 36 chr9 11229318 11230826 -106631801 + MER52A LTR ERV1 136 1755 0 237 265 15 0 chr9 11230835 11230903 -106631724 + L1M LINE L1 5349 5417 -747 3753 214 34 70 chr9 11231157 11232536 -106630091 - L1MB1 LINE L1 -1 5991 4611 389 207 12 0 chr9 11232536 11232618 -106630009 - MER52A LTR ERV1 -460 1295 1213 3753 214 34 70 chr9 11232618 11232952 -106629675 - L1MB1 LINE L1 -1381 4611 4266 2131 225 19 73 chr9 11232963 11233540 -106629087 - MLT2B3 LTR ERVL -8 546 1 16042 163 22 23 chr9 11233542 11236121 -106626506 - HERVL-B3 LTR ERVL -2 5652 3071 4467 64 0 10 chr9 11236121 11236699 -106625928 - L1PA7 LINE L1 0 6154 5583 16042 163 22 23 chr9 11236699 11236802 -106625825 - HERVL-B3 LTR ERVL -2583 3071 2969 1833 144 27 56 chr9 11236802 11237177 -106625450 + THE1B LTR MaLR 1 364 0 16042 163 22 23 chr9 11237177 11237509 -106625118 - HERVL-B3 LTR ERVL -2685 2969 2548 3052 256 78 46 chr9 11237515 11237934 -106624693 - L1MB1 LINE L1 -2813 3157 2753 2149 109 0 17 chr9 11237934 11238249 -106624378 - AluSx SINE Alu 0 312 1 3052 256 78 46 chr9 11238249 11239056 -106623571 - L1MB1 LINE L1 -3217 2753 1973 6584 155 23 17 chr9 11239056 11240275 -106622352 + Tigger3b DNA MER2_type 5 1230 -1 3052 256 78 46 chr9 11240275 11242032 -106620595 - L1MB1 LINE L1 -3997 1973 444 876 314 81 14 chr9 11242056 11242403 -106620224 - L1MB1 LINE L1 -5520 371 2 1532 193 4 0 chr9 11242409 11242673 -106619954 - AluJo SINE Alu -12 300 36 24 53 0 0 chr9 11242887 11242925 -106619702 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr9 11242962 11242985 -106619642 + AT_rich Low_complexity Low_complexity 1 23 0 262 312 48 64 chr9 11243152 11243402 -106619225 - HERVL LTR ERVL -4383 1271 1026 22 0 0 0 chr9 11243467 11243489 -106619138 + AT_rich Low_complexity Low_complexity 1 22 0 325 361 68 21 chr9 11243879 11244070 -106618557 - L2 LINE L2 -469 2845 2646 1537 204 37 30 chr9 11244504 11244935 -106617692 + L1MB2 LINE L1 5738 6171 0 430 239 165 37 chr9 11245191 11245379 -106617248 - L1ME2 LINE L1 0 6164 5953 1738 184 7 3 chr9 11245608 11245907 -106616720 + AluJb SINE Alu 13 312 0 276 100 0 0 chr9 11245918 11245958 -106616669 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 224 350 25 67 chr9 11245984 11246104 -106616523 - MER5A DNA MER1_type 0 189 75 361 282 98 23 chr9 11246160 11246334 -106616293 - MER5A DNA MER1_type 0 189 3 207 133 0 0 chr9 11247336 11247381 -106615246 + (A)n Simple_repeat Simple_repeat 1 45 0 1764 173 10 10 chr9 11248322 11248634 -106613993 - AluJb SINE Alu 0 312 1 1943 147 53 11 chr9 11249216 11249576 -106613051 + THE1C LTR MaLR 1 375 0 294 29 0 0 chr9 11251924 11251959 -106610668 + (CA)n Simple_repeat Simple_repeat 2 36 0 284 331 127 0 chr9 11252176 11252318 -106610309 + L2 LINE L2 2696 2855 -459 303 224 60 43 chr9 11253420 11253536 -106609091 + L1M4 LINE L1 2816 2933 -3213 1101 253 29 3 chr9 11253552 11253864 -106608763 - L1 LINE L1 -3318 2828 2509 525 248 21 0 chr9 11253871 11254012 -106608615 - L1M4 LINE L1 -1549 4597 4454 * 5690 121 18 14 chr9 11254008 11254281 -106608346 + L1PA16 LINE L1 5215 5485 -681 450 0 0 0 chr9 11254281 11254331 -106608296 + (TA)n Simple_repeat Simple_repeat 1 50 0 5690 121 18 14 chr9 11254331 11254624 -106608003 + L1PA16 LINE L1 5485 5775 -391 1320 195 31 69 chr9 11254624 11254942 -106607685 + AluJb SINE Alu 1 306 -6 5690 121 18 14 chr9 11254942 11255317 -106607310 + L1PA16 LINE L1 5775 6154 -12 189 74 0 0 chr9 11255430 11255457 -106607170 + (CA)n Simple_repeat Simple_repeat 2 28 0 255 200 0 0 chr9 11255501 11255556 -106607071 - L1MC4 LINE L1 -1340 6702 6648 1857 225 34 135 chr9 11255580 11256047 -106606580 - MLT2B3 LTR ERVL -26 498 75 431 143 0 0 chr9 11256143 11256213 -106606414 - MLT2B3 LTR ERVL -483 71 2 1391 237 56 31 chr9 11256218 11256737 -106605890 - L1M4 LINE L1 -1701 4445 3914 689 231 19 61 chr9 11256791 11256908 -106605719 + L1 LINE L1 2626 2732 -3414 1638 199 7 7 chr9 11256908 11257195 -106605432 - AluJb SINE Alu -23 289 3 689 231 19 61 chr9 11257195 11257289 -106605338 + L1 LINE L1 2732 2828 -3318 189 74 0 0 chr9 11257330 11257357 -106605270 + (CA)n Simple_repeat Simple_repeat 2 28 0 1654 154 96 9 chr9 11257388 11257733 -106604894 - THE1C LTR MaLR 0 375 1 8378 134 106 6 chr9 11257736 11259158 -106603469 - THE1C-int LTR MaLR -17 1563 1 1603 141 73 62 chr9 11259158 11259527 -106603100 - THE1C LTR MaLR 0 375 3 658 188 34 20 chr9 11259529 11259637 -106602990 - L1M4 LINE L1 -2289 3857 3745 2889 210 9 4 chr9 11259637 11260184 -106602443 - MER44D DNA MER2_type 0 605 1 658 188 34 20 chr9 11260184 11260224 -106602403 - L1M4 LINE L1 -2401 3745 3707 1750 24 9 0 chr9 11261182 11261393 -106601234 - L1PA4 LINE L1 0 6155 5943 961 242 50 0 chr9 11261433 11261652 -106600975 + MIR SINE MIR 3 232 -30 510 361 38 0 chr9 11261661 11261844 -106600783 + LTR16A LTR ERVL 5 194 -256 318 234 65 56 chr9 11262907 11263014 -106599613 + L3b LINE CR1 1329 1436 -147 2147 107 0 3 chr9 11263054 11263343 -106599284 + AluSq SINE Alu 1 288 -25 358 258 0 21 chr9 11263346 11263439 -106599188 + L1MC4 LINE L1 6614 6704 -1338 441 0 0 0 chr9 11263497 11263546 -106599081 + (TG)n Simple_repeat Simple_repeat 2 50 0 23 68 0 0 chr9 11263678 11263722 -106598905 + AT_rich Low_complexity Low_complexity 1 44 0 1909 146 44 0 chr9 11263973 11264268 -106598359 - AluSp SINE Alu -5 308 1 3281 99 18 16 chr9 11264309 11264802 -106597825 - L1PA14 LINE L1 -4 6157 5664 13948 214 22 20 chr9 11264803 11267234 -106595393 - L1P LINE L1 -882 5264 2823 2857 10 0 0 chr9 11267234 11267545 -106595082 - AluY SINE Alu 0 311 1 13948 214 22 20 chr9 11267545 11268423 -106594204 - L1P LINE L1 -3323 2823 1948 201 250 25 0 chr9 11268814 11268854 -106593773 + MIR3 SINE MIR 114 154 -54 23 0 0 0 chr9 11269725 11269748 -106592879 + AT_rich Low_complexity Low_complexity 1 23 0 2184 114 3 3 chr9 11269938 11270237 -106592390 - AluSq SINE Alu -12 301 3 198 385 31 43 chr9 11270310 11270471 -106592156 - L2 LINE L2 0 3272 3114 235 368 39 44 chr9 11270939 11271121 -106591506 + MIR SINE MIR 70 250 -12 1449 160 53 153 chr9 11273348 11273899 -106588728 + LTR54B LTR ERV1 1 496 -2 4897 124 28 35 chr9 11274902 11275883 -106586744 + pTR5 LTR ERV1 741 2025 -413 301 276 10 0 chr9 11275883 11275981 -106586646 + LTR30 LTR ERV1 544 642 -80 1233 163 34 5 chr9 11275988 11276197 -106586430 + pTR5 LTR ERV1 175 389 -2049 2173 91 0 30 chr9 11276328 11276626 -106586001 + AluY SINE Alu 5 293 -18 6708 140 33 25 chr9 11277533 11278287 -106584340 + Tigger3b DNA MER2_type 1 769 -2259 2235 92 14 0 chr9 11278287 11278579 -106584048 - AluY SINE Alu -13 298 3 6708 140 33 25 chr9 11278579 11279046 -106583581 + Tigger3b DNA MER2_type 769 1231 0 314 297 26 58 chr9 11279298 11279453 -106583174 - MIR SINE MIR -1 261 112 248 139 93 0 chr9 11279502 11279545 -106583082 + MLT1G1 LTR MaLR 1 47 -548 518 198 85 41 chr9 11279565 11279814 -106582813 + MLT1G1 LTR MaLR 194 567 0 282 329 33 26 chr9 11279814 11279966 -106582661 + MLT1G1-int LTR MaLR 1 153 -1218 3991 250 54 64 chr9 11280024 11281205 -106581422 - L1MEc LINE L1 -853 5362 4207 1799 126 33 0 chr9 11281205 11281475 -106581152 - AluSg SINE Alu -6 304 26 3991 250 54 64 chr9 11281475 11282251 -106580376 - L1MEc LINE L1 -2008 4207 3425 1837 255 90 13 chr9 11282252 11282774 -106579853 - MLT1F1 LTR MaLR -5 562 1 2446 265 79 15 chr9 11282807 11282948 -106579679 - L1MEc LINE L1 -2827 3388 3257 1213 234 31 0 chr9 11282948 11283238 -106579389 - AluJo SINE Alu -13 299 1 2446 265 79 15 chr9 11283238 11284725 -106577902 - L1MEc LINE L1 -2958 3257 1703 348 0 58 0 chr9 11284804 11284856 -106577771 + (TTA)n Simple_repeat Simple_repeat 3 57 0 7463 21 3 0 chr9 11284856 11286275 -106576352 - L1PA3 LINE L1 -18 6137 4708 685 245 83 0 chr9 11286396 11286649 -106575978 - L1MC3 LINE L1 -1 7784 7511 21138 29 2 0 chr9 11288325 11290884 -106571743 - L1PA3 LINE L1 -784 5362 2800 3299 20 0 0 chr9 11290884 11291661 -106570966 + L1PA3 LINE L1 5354 6167 0 231 54 0 27 chr9 11291661 11291698 -106570929 + (TAAAA)n Simple_repeat Simple_repeat 5 180 0 290 291 58 12 chr9 11292070 11292156 -106570471 + MIR SINE MIR 19 108 -154 808 213 6 22 chr9 11292459 11292642 -106569985 + AluJb SINE Alu 132 311 -1 287 227 13 0 chr9 11293250 11293325 -106569302 + (TA)n Simple_repeat Simple_repeat 2 77 0 346 273 84 0 chr9 11294495 11294638 -106567989 + LTR16A1 LTR ERVL 299 453 -4 277 272 114 26 chr9 11294726 11294840 -106567787 + HAL1 LINE L1 258 381 -2126 707 296 100 34 chr9 11295185 11295863 -106566764 + HAL1 LINE L1 817 1539 -968 384 313 40 7 chr9 11295885 11296035 -106566592 + HAL1 LINE L1 1619 1773 -734 656 288 123 48 chr9 11296037 11296544 -106566083 - L2 LINE L2 -98 3215 2648 3219 43 0 0 chr9 11296544 11296939 -106565688 + L1PA4 LINE L1 5758 6152 -3 656 288 123 48 chr9 11296939 11296975 -106565652 - L2 LINE L2 -665 2648 2616 1413 153 16 28 chr9 11297437 11297686 -106564941 - L1PB3 LINE L1 0 6154 5909 211 220 138 88 chr9 11298517 11298676 -106563951 - L2 LINE L2 -37 3276 3110 23 0 0 0 chr9 11298793 11298816 -106563811 + AT_rich Low_complexity Low_complexity 1 23 0 1850 262 82 39 chr9 11299090 11300534 -106562093 + L1ME LINE L1 10 1505 -4575 306 286 165 9 chr9 11300534 11300758 -106561869 + L1ME LINE L1 3522 3780 -2300 2127 255 71 38 chr9 11300869 11302139 -106560488 + L1ME LINE L1 4298 5600 -500 28 29 0 0 chr9 11305144 11305179 -106557448 + AT_rich Low_complexity Low_complexity 1 35 0 269 235 12 0 chr9 11305466 11305551 -106557076 + (CATA)n Simple_repeat Simple_repeat 3 88 0 332 278 111 12 chr9 11307397 11307528 -106555099 + MIR SINE MIR 11 151 -57 5548 116 8 0 chr9 11307532 11308359 -106554268 + L1PA13 LINE L1 5310 6143 -20 29 47 0 0 chr9 11308402 11308445 -106554182 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr9 11308699 11308723 -106553904 + (CA)n Simple_repeat Simple_repeat 1 24 0 394 243 98 75 chr9 11309290 11309463 -106553164 + MER5B DNA MER1_type 2 178 0 262 257 14 0 chr9 11309571 11309645 -106552982 + (CA)n Simple_repeat Simple_repeat 1 75 0 2602 39 0 7 chr9 11309709 11310017 -106552610 + AluY SINE Alu 1 306 -5 199 286 57 29 chr9 11310213 11310283 -106552344 + MIR SINE MIR 82 153 -55 1643 147 55 68 chr9 11310762 11311142 -106551485 - THE1C LTR MaLR 0 375 1 9533 126 63 6 chr9 11311142 11312637 -106549990 - THE1C-int LTR MaLR 0 1580 1 1510 167 66 74 chr9 11312637 11313015 -106549612 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr9 11313137 11313163 -106549464 + AT_rich Low_complexity Low_complexity 1 26 0 34 42 0 0 chr9 11313467 11313515 -106549112 + AT_rich Low_complexity Low_complexity 1 48 0 261 297 66 0 chr9 11313625 11313716 -106548911 - MIR SINE MIR -62 200 104 22 0 0 0 chr9 11314864 11314886 -106547741 + AT_rich Low_complexity Low_complexity 1 22 0 664 295 71 5 chr9 11315179 11315403 -106547224 + MIR SINE MIR 13 251 -11 416 226 81 24 chr9 11315530 11315654 -106546973 + L2 LINE L2 3183 3313 0 183 304 170 7 chr9 11315975 11316110 -106546517 - MIR SINE MIR -11 251 95 2131 160 38 30 chr9 11316125 11316674 -106545953 - MLT2A2 LTR ERVL 0 554 1 211 304 14 29 chr9 11317120 11317189 -106545438 - L2 LINE L2 -1 3312 3245 1105 221 0 32 chr9 11317840 11318093 -106544534 + L1MC3 LINE L1 6548 6792 -993 241 292 135 22 chr9 11318127 11318216 -106544411 + MIR SINE MIR 32 130 -78 2071 101 6 38 chr9 11318886 11319204 -106543423 - AluSp SINE Alu -1 312 5 2487 77 0 0 chr9 11319311 11319621 -106543006 + AluY SINE Alu 1 310 -1 180 111 0 0 chr9 11320322 11320349 -106542278 + (T)n Simple_repeat Simple_repeat 1 27 0 567 216 69 78 chr9 11322501 11322807 -106539820 - LTR37A LTR ERV1 -12 414 112 598 284 85 6 chr9 11323533 11323709 -106538918 + MIR SINE MIR 70 259 -3 2353 94 139 5 chr9 11324100 11324495 -106538132 + LTR7 LTR ERV1 1 448 -2 14533 111 6 26 chr9 11324497 11327307 -106535320 + HERVH LTR ERV1 1 2995 -4718 877 160 7 0 chr9 11327286 11327436 -106535191 + HERVH LTR ERV1 3140 3290 -4423 * 1598 121 12 0 chr9 11327435 11327675 -106534952 + HERVH LTR ERV1 3500 3742 -3971 7600 126 13 2 chr9 11327682 11328837 -106533790 + HERVH LTR ERV1 3993 5149 -2564 1418 125 19 0 chr9 11328838 11329054 -106533573 + HERVH LTR ERV1 5600 5819 -1894 2374 96 48 13 chr9 11329054 11329431 -106533196 + HERVH LTR ERV1 7324 7713 0 2241 96 152 18 chr9 11329431 11329826 -106532801 + LTR7 LTR ERV1 1 448 -2 635 77 0 22 chr9 11329826 11329917 -106532710 + LTR7 LTR ERV1 354 442 -8 2326 91 0 16 chr9 11330136 11330445 -106532182 - AluY SINE Alu -6 305 2 1540 168 44 24 chr9 11331491 11331789 -106530838 + AluJb SINE Alu 1 304 -8 617 186 8 0 chr9 11332095 11332219 -106530408 + L1MB4 LINE L1 6050 6174 -6 2037 47 3 10 chr9 11332309 11332320 -106530307 + L1PA4 LINE L1 5668 5678 -496 217 49 0 49 chr9 11332320 11332361 -106530266 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2037 47 3 10 chr9 11332361 11332642 -106529985 + L1PA4 LINE L1 5678 5954 -220 270 0 0 0 chr9 11332935 11332965 -106529662 + (TG)n Simple_repeat Simple_repeat 1 30 0 238 265 0 0 chr9 11334316 11334365 -106528262 - L2 LINE L2 -5 3267 3219 3356 129 39 2 chr9 11334807 11335341 -106527286 + MER41C LTR ERV1 1 554 0 905 203 144 13 chr9 11335631 11335867 -106526760 + AluYa8 SINE Alu 44 310 0 283 340 10 0 chr9 11336982 11337079 -106525548 - L2 LINE L2 -19 3294 3197 2272 129 25 8 chr9 11337525 11337881 -106524746 - THE1B LTR MaLR 0 364 3 10856 108 1 32 chr9 11337887 11339510 -106523117 - THE1B-int LTR MaLR -4 1576 5 1174 146 0 16 chr9 11339511 11339696 -106522931 - THE1B LTR MaLR -6 358 177 1202 211 61 22 chr9 11339920 11340232 -106522395 + MLT2B1 LTR ERVL 1 324 -196 1484 135 139 0 chr9 11340235 11340487 -106522140 + Ricksha DNA DNA 3 289 -2957 * 7532 144 56 7 chr9 11340485 11341815 -106520812 + Ricksha DNA DNA 1821 3223 -39 779 167 68 123 chr9 11341815 11342066 -106520561 + MLT2B1 LTR ERVL 284 520 0 2974 231 51 26 chr9 11342886 11343686 -106518941 - MER99 DNA DNA -4 824 5 323 103 0 17 chr9 11343930 11343988 -106518639 + (GA)n Simple_repeat Simple_repeat 1 57 0 403 333 62 1 chr9 11344780 11344963 -106517664 - MIR SINE MIR -39 169 19 3212 206 28 84 chr9 11346200 11347226 -106515401 - LTR5 LTR ERVK 0 969 1 339 300 112 24 chr9 11348128 11348415 -106514212 - Tigger8 DNA MER2_type -118 548 237 2395 39 0 0 chr9 11348813 11349093 -106513534 + L1P LINE L1 4095 4374 -1772 688 293 38 9 chr9 11349160 11349372 -106513255 + MIR SINE MIR 10 227 -35 21 0 0 0 chr9 11349372 11349393 -106513234 + AT_rich Low_complexity Low_complexity 1 21 0 351 253 119 36 chr9 11349745 11350040 -106512587 - MLT1G LTR MaLR 0 549 226 2136 139 0 13 chr9 11350238 11350547 -106512080 - AluSx SINE Alu -7 305 1 467 333 73 18 chr9 11351103 11351322 -106511305 + MIR SINE MIR 15 245 -17 682 296 29 15 chr9 11351348 11351554 -106511073 + MLT1K LTR MaLR 373 581 -7 371 367 28 17 chr9 11351565 11351742 -106510885 - MER5A DNA MER1_type -10 179 1 953 181 15 10 chr9 11351902 11352101 -106510526 - L1MA6 LINE L1 -2 6298 6099 246 261 81 54 chr9 11353428 11353539 -106509088 - MIR3 SINE MIR -40 168 55 252 253 107 0 chr9 11353664 11353739 -106508888 + Charlie8 DNA MER1_type 99 181 -2236 830 251 120 43 chr9 11353924 11353977 -106508650 - MLT1I LTR MaLR 0 409 362 2184 110 47 65 chr9 11353977 11354359 -106508268 + THE1C LTR MaLR 1 375 0 830 251 120 43 chr9 11354359 11354679 -106507948 - MLT1I LTR MaLR -47 362 7 236 314 154 0 chr9 11354860 11354966 -106507661 + MIR SINE MIR 46 164 -69 1378 199 29 19 chr9 11355005 11355317 -106507310 - MLT1A1 LTR MaLR -50 315 1 371 323 19 38 chr9 11355456 11355614 -106507013 + MIR SINE MIR 78 232 -30 276 188 129 47 chr9 11355721 11355806 -106506821 - MLT1A1 LTR MaLR -188 186 95 2317 95 3 13 chr9 11356437 11356752 -106505875 - AluSx SINE Alu 0 312 1 327 175 16 0 chr9 11356754 11356817 -106505810 - MIR SINE MIR -113 149 86 2831 102 3 0 chr9 11356881 11357235 -106505392 + THE1A LTR MaLR 1 355 0 12104 107 3 1 chr9 11357235 11358811 -106503816 + THE1A-int LTR MaLR 1 1579 -1 2866 99 3 0 chr9 11358812 11359166 -106503461 + THE1A LTR MaLR 1 355 0 189 387 0 43 chr9 11359257 11359350 -106503277 - MIR SINE MIR -90 118 30 2606 158 59 9 chr9 11360751 11361193 -106501434 + MLT2C2 LTR ERVL 1 464 0 516 359 11 6 chr9 11361249 11361430 -106501197 - MIR SINE MIR -70 192 11 404 295 45 0 chr9 11363459 11363571 -106499056 - MER5A DNA MER1_type 0 189 73 4689 74 16 19 chr9 11364084 11365114 -106497513 + MER11A LTR ERVK 1 1266 0 1913 166 0 13 chr9 11365114 11365422 -106497205 - AluJb SINE Alu -8 304 1 22 0 0 0 chr9 11365422 11365444 -106497183 + AT_rich Low_complexity Low_complexity 1 22 0 2260 92 0 0 chr9 11366299 11366583 -106496044 + AluSx SINE Alu 5 288 -24 23 54 0 0 chr9 11368428 11368465 -106494162 + AT_rich Low_complexity Low_complexity 1 37 0 606 203 15 30 chr9 11368821 11368954 -106493673 + FLAM_A SINE Alu 3 133 0 1490 162 26 0 chr9 11369525 11369754 -106492873 - MER46A DNA MER2_type 0 236 2 2281 102 0 0 chr9 11369755 11370048 -106492579 + AluSg SINE Alu 1 293 -17 250 143 20 41 chr9 11370100 11370149 -106492478 - AluSp SINE Alu -135 168 121 2312 92 3 0 chr9 11370251 11370556 -106492071 + AluY SINE Alu 1 306 -5 476 305 171 61 chr9 11371007 11371788 -106490839 + L2 LINE L2 2228 3154 -118 1271 154 288 3 chr9 11371788 11372073 -106490554 + MER47A DNA MER2_type 1 366 0 476 305 171 61 chr9 11372073 11372196 -106490431 + L2 LINE L2 3154 3262 -10 928 196 138 45 chr9 11372634 11372728 -106489899 - AluJo SINE Alu -67 245 161 2199 99 24 0 chr9 11372728 11373020 -106489607 - AluSq SINE Alu -14 299 1 928 196 138 45 chr9 11373020 11373149 -106489478 - AluJo SINE Alu -151 161 1 22 35 0 0 chr9 11373495 11373524 -106489103 + AT_rich Low_complexity Low_complexity 1 29 0 2190 95 3 10 chr9 11374212 11374508 -106488119 - AluSp SINE Alu -19 294 1 3293 60 2 2 chr9 11375071 11375470 -106487157 + L1PA6 LINE L1 5754 6152 -2 26 0 0 0 chr9 11375576 11375602 -106487025 + AT_rich Low_complexity Low_complexity 1 26 0 277 319 163 0 chr9 11377393 11377534 -106485093 - MIR SINE MIR -79 183 20 463 180 40 30 chr9 11377606 11377706 -106484921 + MER5A DNA MER1_type 6 106 -83 851 220 75 0 chr9 11377903 11378089 -106484538 + MER3 DNA MER1_type 9 208 -1 263 180 0 0 chr9 11379733 11379783 -106482844 + AluSc SINE Alu 247 296 -3 1044 172 108 135 chr9 11379827 11380123 -106482504 + AluJb SINE Alu 3 290 -12 455 174 47 23 chr9 11380255 11380341 -106482286 + AluJ/FLAM SINE Alu 2 89 -223 1332 136 5 5 chr9 11380350 11380556 -106482071 - AluJb SINE Alu -106 206 1 584 157 0 0 chr9 11380611 11380694 -106481933 - AluSg/x SINE Alu -23 286 204 2190 80 3 0 chr9 11380776 11381065 -106481562 - AluSg SINE Alu -20 290 1 453 236 0 0 chr9 11381980 11382086 -106480541 + FRAM SINE Alu 63 168 -8 928 100 21 29 chr9 11382142 11382282 -106480345 + AluJb SINE Alu 22 160 -152 700 181 8 15 chr9 11382288 11382421 -106480206 - FLAM_C SINE Alu 0 133 2 2020 99 11 0 chr9 11382456 11382728 -106479899 + AluSx SINE Alu 3 277 -35 1059 215 15 5 chr9 11382728 11382933 -106479694 + AluJo SINE Alu 76 282 -30 2081 113 0 7 chr9 11382972 11383281 -106479346 - AluSg SINE Alu 0 307 1 217 119 48 0 chr9 11383937 11383979 -106478648 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1267 134 0 46 chr9 11383992 11384208 -106478419 - AluSq SINE Alu -13 300 95 473 113 16 0 chr9 11384311 11384373 -106478254 + AluSg/x SINE Alu 114 176 -134 1625 170 37 0 chr9 11385140 11385434 -106477193 + AluSx SINE Alu 2 305 0 1725 160 0 17 chr9 11385631 11385918 -106476709 - AluSx SINE Alu -30 282 1 1788 127 48 4 chr9 11386125 11386393 -106476234 - AluSc SINE Alu -19 290 11 2046 147 0 0 chr9 11386675 11386975 -106475652 - AluSx SINE Alu -12 300 1 1819 101 8 0 chr9 11387143 11387381 -106475246 + AluSq SINE Alu 1 240 -73 481 303 41 74 chr9 11387764 11388008 -106474619 + MLT1J LTR MaLR 216 451 -60 2148 101 0 0 chr9 11388131 11388407 -106474220 + AluY SINE Alu 1 276 -35 192 40 0 0 chr9 11388411 11388436 -106474191 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 41173 70 3 4 chr9 11388454 11394598 -106468029 + L1PA4 LINE L1 11 6154 -1 293 210 61 31 chr9 11394730 11394862 -106467765 - L1MC4a LINE L1 -1289 6507 6382 2783 279 77 58 chr9 11394871 11395299 -106467328 + L1MCc LINE L1 19 438 -6077 186 43 0 0 chr9 11395299 11395322 -106467305 + (GA)n Simple_repeat Simple_repeat 2 24 0 2783 279 77 58 chr9 11395322 11396473 -106466154 + L1MCc LINE L1 438 1628 -4887 441 274 124 43 chr9 11396537 11396723 -106465904 - MLT1H1 LTR MaLR -348 207 7 25 31 0 0 chr9 11397125 11397157 -106465470 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr9 11397598 11397626 -106465001 + AT_rich Low_complexity Low_complexity 1 28 0 799 339 40 49 chr9 11397669 11398097 -106464530 + MER45C DNA AcHobo 1 424 -529 450 300 58 0 chr9 11398094 11398284 -106464343 + MER45B DNA AcHobo 768 968 -72 * 502 211 0 0 chr9 11398286 11398381 -106464246 - MLT1E2 LTR MaLR -480 146 52 2328 103 66 6 chr9 11399032 11399380 -106463247 - MER51B LTR ERV1 -8 369 1 438 129 0 0 chr9 11399382 11399444 -106463183 - MER51B-int LTR ERV1 -1 7815 7754 21 57 0 0 chr9 11399640 11399675 -106462952 + AT_rich Low_complexity Low_complexity 1 35 0 231 133 0 0 chr9 11399675 11399720 -106462907 + (TA)n Simple_repeat Simple_repeat 2 46 0 19360 91 9 2 chr9 11404565 11408122 -106454505 - L1PA7 LINE L1 -2 6152 2561 2136 126 0 0 chr9 11409428 11409713 -106452914 + AluSx SINE Alu 1 285 -27 21 0 0 0 chr9 11409713 11409734 -106452893 + AT_rich Low_complexity Low_complexity 1 21 0 297 233 0 0 chr9 11410045 11410105 -106452522 - MER33 DNA MER1_type -222 102 43 2029 135 0 14 chr9 11410256 11410553 -106452074 - AluSp SINE Alu -20 293 1 2107 134 7 0 chr9 11411047 11411352 -106451275 - AluSx SINE Alu -5 307 1 2183 138 0 0 chr9 11411846 11412151 -106450476 - AluSg SINE Alu -5 305 1 1614 146 27 8 chr9 11413170 11413430 -106449197 - AluSq SINE Alu 0 313 49 412 187 7 29 chr9 11413809 11413902 -106448725 + AluJ/FLAM SINE Alu 1 62 -240 366 282 0 0 chr9 11413954 11414124 -106448503 + (GTCTG)n Simple_repeat Simple_repeat 3 172 0 285 283 0 0 chr9 11414156 11414308 -106448319 + (GTCTG)n Simple_repeat Simple_repeat 4 155 0 402 297 0 0 chr9 11414311 11414429 -106448198 + (CAGTC)n Simple_repeat Simple_repeat 3 120 0 330 288 0 0 chr9 11414433 11414593 -106448034 + (GTCTG)n Simple_repeat Simple_repeat 4 163 0 255 301 0 0 chr9 11414594 11414667 -106447960 + (CAGTC)n Simple_repeat Simple_repeat 1 73 0 212 211 14 0 chr9 11414671 11414742 -106447885 + (GTCTG)n Simple_repeat Simple_repeat 4 75 0 219 224 0 0 chr9 11414743 11414792 -106447835 + (CAGTC)n Simple_repeat Simple_repeat 1 49 0 300 270 0 0 chr9 11414804 11414930 -106447697 + (CAGTC)n Simple_repeat Simple_repeat 3 128 0 303 292 0 0 chr9 11415019 11415187 -106447440 + (GTCTG)n Simple_repeat Simple_repeat 3 170 0 192 287 0 0 chr9 11415205 11415306 -106447321 + (GTCTG)n Simple_repeat Simple_repeat 5 105 0 1517 163 31 7 chr9 11415347 11415641 -106446986 - AluSq SINE Alu -12 301 1 310 308 128 15 chr9 11415730 11416191 -106446436 + L1ME3A LINE L1 4263 4775 -1371 21 0 0 0 chr9 11416459 11416480 -106446147 + AT_rich Low_complexity Low_complexity 1 21 0 642 194 129 48 chr9 11416492 11416740 -106445887 - MER33 DNA MER1_type 0 324 57 632 307 88 34 chr9 11416915 11417481 -106445146 + L1ME3A LINE L1 5264 5860 -310 387 140 0 0 chr9 11417565 11417622 -106445005 + AluJ/FLAM SINE Alu 46 102 -200 1495 150 9 4 chr9 11417622 11417855 -106444772 - AluSp SINE Alu -79 234 1 1723 196 0 0 chr9 11418711 11419007 -106443620 - AluJb SINE Alu -16 296 1 3367 215 66 27 chr9 11419179 11419268 -106443359 + L1MC3 LINE L1 6366 6450 -1335 1957 159 0 0 chr9 11419268 11419570 -106443057 - AluSg SINE Alu -8 302 1 3367 215 66 27 chr9 11419570 11420407 -106442220 + L1MC3 LINE L1 6450 7328 -457 424 233 188 7 chr9 11421321 11421460 -106441167 + MER5A DNA MER1_type 1 184 -5 288 0 0 0 chr9 11422309 11422341 -106440286 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 260 266 13 38 chr9 11423853 11423932 -106438695 - MIR SINE MIR -30 232 156 191 362 79 31 chr9 11424526 11424653 -106437974 + MIR SINE MIR 19 151 -57 * 610 219 62 12 chr9 11424646 11424806 -106437821 + MIR SINE MIR 95 262 0 843 202 26 26 chr9 11424815 11425008 -106437619 - MER46A DNA MER2_type -1 235 43 1075 158 3 0 chr9 11425391 11426242 -106436385 + ALR/Alpha Satellite centromeric 1 853 -22 1264 123 3 1 chr9 11426342 11431673 -106430954 + ALR/Alpha Satellite centromeric 1 5338 0 1263 127 3 7 chr9 11431685 11434575 -106428052 + ALR/Alpha Satellite centromeric 1 2877 -48 4433 86 21 6 chr9 11434575 11435592 -106427035 + MER11A LTR ERVK 1 1266 0 1251 125 4 2 chr9 11435592 11442542 -106420085 + ALR/Alpha Satellite centromeric 1 6961 -54 5109 10 2 2 chr9 11444156 11444740 -106417887 - L1PA2 LINE L1 -94 6061 5478 196 273 26 39 chr9 11445407 11445484 -106417143 + L2 LINE L2 3031 3106 -207 22 56 0 0 chr9 11445489 11445525 -106417102 + AT_rich Low_complexity Low_complexity 1 36 0 1628 177 11 11 chr9 11445527 11445804 -106416823 - AluJb SINE Alu -25 287 11 596 280 48 43 chr9 11445819 11446026 -106416601 + L2 LINE L2 3101 3308 -5 187 363 77 0 chr9 11446027 11446118 -106416509 + MIR SINE MIR 165 262 0 290 241 175 51 chr9 11446748 11446885 -106415742 - MIR3 SINE MIR -26 182 29 1131 156 10 2 chr9 11447441 11451090 -106411537 + ALR/Alpha Satellite centromeric 1 3678 -4 1442 72 97 5 chr9 11451091 11451298 -106411329 - AluY SINE Alu -19 292 67 1212 136 5 8 chr9 11451304 11453404 -106409223 + ALR/Alpha Satellite centromeric 1 2094 -66 1163 138 6 7 chr9 11453535 11457432 -106405195 + ALR/Alpha Satellite centromeric 1 3892 -59 21 0 0 0 chr9 11457559 11457580 -106405047 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 11457948 11457969 -106404658 + AT_rich Low_complexity Low_complexity 1 21 0 224 80 120 0 chr9 11457980 11458030 -106404597 + (TTATA)n Simple_repeat Simple_repeat 5 60 0 434 354 62 10 chr9 11458389 11458598 -106404029 + MIR SINE MIR 40 259 -3 2234 144 23 0 chr9 11459631 11459984 -106402643 + THE1B LTR MaLR 1 361 -3 9209 95 24 9 chr9 11459984 11461158 -106401469 + HERVL LTR ERVL 3319 4514 -1140 2324 87 0 0 chr9 11461158 11461458 -106401169 + AluY SINE Alu 1 300 -11 9209 95 24 9 chr9 11461458 11461554 -106401073 + HERVL LTR ERVL 4514 4607 -1047 3036 50 3 0 chr9 11461657 11462035 -106400592 + L1PA4 LINE L1 5774 6152 -3 367 320 82 24 chr9 11462423 11462597 -106400030 + MIR3 SINE MIR 20 207 -1 1843 157 17 3 chr9 11462611 11462905 -106399722 + AluSp SINE Alu 2 299 -14 952 248 216 19 chr9 11463100 11463609 -106399018 - L2 LINE L2 -2 3311 2664 807 130 19 80 chr9 11463612 11463774 -106398853 + AluSg/x SINE Alu 140 291 -21 565 243 64 0 chr9 11463784 11463957 -106398670 - L2 LINE L2 -639 2675 2492 244 214 143 80 chr9 11464023 11464135 -106398492 + L2 LINE L2 3154 3272 0 970 146 38 0 chr9 11464257 11464415 -106398212 - AluSg/x SINE Alu -4 308 145 3135 71 5 5 chr9 11464568 11464991 -106397636 + L1PA6 LINE L1 5732 6154 0 844 180 50 0 chr9 11464991 11465152 -106397475 - THE1C LTR MaLR -206 169 1 26 0 0 0 chr9 11465590 11465616 -106397011 + AT_rich Low_complexity Low_complexity 1 26 0 243 100 100 0 chr9 11466818 11466858 -106395769 + MSTA LTR MaLR 385 428 0 505 286 59 49 chr9 11467052 11467443 -106395184 + L1MDa LINE L1 1525 1919 -4621 384 125 0 0 chr9 11467826 11467890 -106394737 + (CA)n Simple_repeat Simple_repeat 2 65 0 2005 141 0 0 chr9 11468076 11468380 -106394247 - AluSx SINE Alu 0 304 1 631 274 67 74 chr9 11468416 11469834 -106392793 + L1MDa LINE L1 2621 4028 -2512 234 306 24 0 chr9 11470018 11470103 -106392524 + L1MCc LINE L1 113 199 -6224 1357 263 50 13 chr9 11470176 11470633 -106391994 + L1MCc LINE L1 3032 3505 -3436 3863 146 64 40 chr9 11470823 11471578 -106391049 - LTR1 LTR ERV1 0 785 13 1215 62 19 0 chr9 11471886 11472048 -106390579 + L1PA7 LINE L1 5990 6154 0 186 43 0 0 chr9 11472159 11472182 -106390445 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 11472568 11472589 -106390038 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 11472690 11472719 -106389908 + AT_rich Low_complexity Low_complexity 1 29 0 3844 36 0 0 chr9 11472861 11473339 -106389288 + L1P LINE L1 2296 2773 -3373 1213 140 4 1 chr9 11473439 11475014 -106387613 - ALR/Alpha Satellite centromeric 0 1579 1 4359 91 17 4 chr9 11475017 11476028 -106386599 - MER11A LTR ERVK -5 1261 1 1291 133 3 1 chr9 11476023 11481168 -106381459 - ALR/Alpha Satellite centromeric -55 5153 1 * 1217 140 2 4 chr9 11481268 11482490 -106380137 + ALR/Alpha Satellite centromeric 1 1220 -27 1192 133 3 3 chr9 11482503 11484553 -106378074 + ALR/Alpha Satellite centromeric 1 2049 -4 550 141 0 0 chr9 11484553 11484638 -106377989 + AluSg/x SINE Alu 217 301 -8 1300 126 5 3 chr9 11484645 11489698 -106372929 + ALR/Alpha Satellite centromeric 1 5064 0 11199 75 2 6 chr9 11489806 11492127 -106370500 + L1PA5 LINE L1 3848 6151 -3 1104 140 7 4 chr9 11492133 11493686 -106368941 + ALR/Alpha Satellite centromeric 1 1557 -34 490 226 0 0 chr9 11494515 11494632 -106367995 - L1MC4 LINE L1 0 8042 7901 1870 110 50 0 chr9 11494695 11494976 -106367651 - AluSx SINE Alu -16 296 2 576 227 148 75 chr9 11494976 11495222 -106367405 - L1MC4 LINE L1 -995 6813 6586 2012 124 10 7 chr9 11495222 11495520 -106367107 - AluSx SINE Alu -13 299 1 576 227 148 75 chr9 11495520 11495942 -106366685 - L1MC4 LINE L1 -1222 6586 6116 * 1004 147 28 6 chr9 11495935 11496112 -106366515 - L1PA16 LINE L1 -34 6132 5952 640 187 89 31 chr9 11496137 11496332 -106366295 - MER33 DNA MER1_type -255 69 1 192 163 0 0 chr9 11496714 11496757 -106365870 + (CA)n Simple_repeat Simple_repeat 2 44 0 2650 208 15 37 chr9 11497538 11498220 -106364407 + L1 LINE L1 3179 3845 -2301 650 342 10 28 chr9 11498231 11498623 -106364004 + L1PA16 LINE L1 10 394 -7187 846 227 5 5 chr9 11499727 11499962 -106362665 + L1PA16 LINE L1 3262 3603 -3981 1996 176 12 18 chr9 11499963 11499991 -106362636 - MER1B DNA MER1_type -2373 339 312 5275 74 0 25 chr9 11499991 11500697 -106361930 + LTR12 LTR ERV1 1 688 0 1996 176 12 18 chr9 11500697 11501009 -106361618 - MER1B DNA MER1_type -2400 312 1 10691 236 31 15 chr9 11501011 11504700 -106357927 + L1PA16 LINE L1 3599 7343 -261 1519 90 50 0 chr9 11505130 11505516 -106357111 + LTR19A LTR ERV1 1 486 0 39530 77 31 12 chr9 11505517 11511003 -106351624 + LTR19A-int LTR ERV1 1 5586 0 3347 89 25 0 chr9 11511003 11511477 -106351150 + LTR19A LTR ERV1 1 486 0 1151 157 30 0 chr9 11511522 11511719 -106350908 + L1PA16 LINE L1 7393 7595 -9 265 111 22 22 chr9 11511937 11511982 -106350645 + MER4A LTR ERV1 54 98 -566 1550 164 0 93 chr9 11512034 11512321 -106350306 + MER4A LTR ERV1 372 627 -37 1457 56 0 0 chr9 11512321 11512501 -106350126 - L1PA3 LINE L1 0 6155 5976 1550 164 0 93 chr9 11512501 11512536 -106350091 + MER4A LTR ERV1 627 664 0 427 219 171 0 chr9 11513043 11513148 -106349479 + MER5C DNA MER1_type 2 124 -200 24 67 0 0 chr9 11513536 11513581 -106349046 + AT_rich Low_complexity Low_complexity 1 45 0 280 308 136 42 chr9 11513736 11514353 -106348274 + HAL1b LINE L1 73 747 -601 41 66 0 0 chr9 11514365 11514441 -106348186 + AT_rich Low_complexity Low_complexity 1 76 0 857 212 33 24 chr9 11514565 11514777 -106347850 - MER20 DNA MER1_type -4 215 2 297 363 20 10 chr9 11515368 11515470 -106347157 + L2 LINE L2 3153 3255 -17 26 0 0 0 chr9 11516242 11516268 -106346359 + AT_rich Low_complexity Low_complexity 1 26 0 3980 33 0 6 chr9 11516479 11517001 -106345626 - L1PA3 LINE L1 0 6155 5674 1957 141 3 10 chr9 11517003 11517300 -106345327 - AluSq SINE Alu -16 297 3 21 0 0 0 chr9 11517316 11517337 -106345290 + AT_rich Low_complexity Low_complexity 1 21 0 628 272 117 58 chr9 11517841 11518344 -106344283 - HAL1 LINE L1 -389 2118 1586 190 339 0 32 chr9 11519411 11519473 -106343154 + MIR SINE MIR 30 89 -173 22 35 0 0 chr9 11519475 11519504 -106343123 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 11519547 11519567 -106343060 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 298 380 25 0 chr9 11520062 11520183 -106342444 - MIR3 SINE MIR -28 180 57 351 222 167 9 chr9 11522635 11522743 -106339884 + L2 LINE L2 3182 3306 -7 2187 154 32 2 chr9 11522780 11523183 -106339444 - L1MA3 LINE L1 -1120 5026 4612 5014 155 17 42 chr9 11523183 11524376 -106338251 + L1MA3 LINE L1 5023 6187 -118 1964 68 0 0 chr9 11524548 11524797 -106337830 - L1PA5 LINE L1 -5 6149 5901 9608 39 0 5 chr9 11524797 11526485 -106336142 + L1PA5 LINE L1 4211 5891 -263 783 131 0 48 chr9 11526485 11526622 -106336005 + L1MA3 LINE L1 6166 6303 -2 24 53 0 0 chr9 11526702 11526740 -106335887 + AT_rich Low_complexity Low_complexity 1 38 0 27 49 0 0 chr9 11526797 11526838 -106335789 + AT_rich Low_complexity Low_complexity 1 41 0 2073 131 0 10 chr9 11527008 11527320 -106335307 - AluSx SINE Alu 0 312 4 256 297 22 43 chr9 11527377 11527515 -106335112 - L1MC/D LINE L1 -2058 5750 5616 2512 111 6 3 chr9 11527722 11528083 -106334544 + THE1B LTR MaLR 1 362 -2 22 35 0 0 chr9 11529114 11529143 -106333484 + AT_rich Low_complexity Low_complexity 1 29 0 217 354 0 0 chr9 11531664 11531743 -106330884 + L2 LINE L2 3230 3308 -5 22 35 0 0 chr9 11531743 11531772 -106330855 + AT_rich Low_complexity Low_complexity 1 29 0 231 213 0 16 chr9 11532226 11532287 -106330340 + Charlie7 DNA MER1_type 41 100 -2512 234 274 217 0 chr9 11532553 11532659 -106329968 + L2 LINE L2 3185 3313 0 498 320 157 29 chr9 11532670 11532951 -106329676 + L3 LINE CR1 1256 1572 -5 25 0 0 0 chr9 11533819 11533844 -106328783 + AT_rich Low_complexity Low_complexity 1 25 0 1110 228 44 34 chr9 11535708 11536073 -106326554 - MLT1B LTR MaLR 0 390 6 343 198 0 23 chr9 11536245 11536331 -106326296 - L1MA9 LINE L1 -14 6298 6215 2446 161 19 26 chr9 11537004 11537471 -106325156 - MLT1C LTR MaLR -2 465 2 947 190 0 0 chr9 11538879 11539037 -106323590 + FAM SINE Alu 1 158 -17 396 0 0 0 chr9 11539039 11539083 -106323544 + (CATA)n Simple_repeat Simple_repeat 2 45 0 223 288 27 55 chr9 11541398 11541471 -106321156 - MER5A DNA MER1_type -65 124 54 222 358 44 15 chr9 11541518 11541655 -106320972 + MER5A DNA MER1_type 1 141 -48 843 218 6 6 chr9 11542151 11542321 -106320306 - MLT1C LTR MaLR -2 465 296 3820 125 14 163 chr9 11542321 11543860 -106318767 - pTR5 LTR ERV1 0 2606 1524 773 217 144 37 chr9 11543860 11544159 -106318468 - MLT1C LTR MaLR -131 336 6 22 0 0 0 chr9 11544412 11544434 -106318193 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 11546599 11546620 -106316007 + AT_rich Low_complexity Low_complexity 1 21 0 354 217 0 54 chr9 11547798 11547890 -106314737 + L1MC/D LINE L1 4680 4766 -1380 1947 262 57 28 chr9 11547982 11548949 -106313678 + L1ME1 LINE L1 5135 6122 -44 479 244 39 13 chr9 11548835 11548991 -106313636 + L1MA10 LINE L1 6167 6326 -8 * 347 335 108 20 chr9 11549045 11549248 -106313379 + MIR SINE MIR 35 255 -7 517 188 55 16 chr9 11550287 11550434 -106312193 + L1MA5A LINE L1 5241 5391 -756 * 1725 197 43 33 chr9 11550409 11550953 -106311674 + L1MC/D LINE L1 4923 5464 -743 1133 203 22 87 chr9 11550992 11551398 -106311229 + MER66A LTR ERV1 97 438 -40 2932 216 30 69 chr9 11551439 11552390 -106310237 + MER66A-int LTR ERV1 67 1114 -5562 7092 178 35 24 chr9 11552751 11554105 -106308522 + MER66A-int LTR ERV1 1210 2578 -4098 2551 162 16 3 chr9 11554128 11554944 -106307683 + MER66-int LTR ERV1 5018 5974 -702 2812 157 43 26 chr9 11554947 11555534 -106307093 + L1MA5A LINE L1 5691 6287 -10 4772 173 61 24 chr9 11555546 11555831 -106306796 + L1MC1 LINE L1 5327 5600 -733 2405 67 0 10 chr9 11555831 11556145 -106306482 + AluY SINE Alu 1 311 0 4772 173 61 24 chr9 11556145 11556830 -106305797 + L1MC1 LINE L1 5600 6332 -1 293 331 26 45 chr9 11558238 11558392 -106304235 + L2 LINE L2 3127 3277 -36 207 250 0 0 chr9 11558757 11558801 -106303826 + (TG)n Simple_repeat Simple_repeat 2 45 0 456 104 0 0 chr9 11559568 11559635 -106302992 + (TG)n Simple_repeat Simple_repeat 2 68 0 240 239 15 0 chr9 11559635 11559702 -106302925 + (TA)n Simple_repeat Simple_repeat 1 68 0 25 75 0 0 chr9 11559722 11559775 -106302852 + AT_rich Low_complexity Low_complexity 1 53 0 198 169 46 0 chr9 11559783 11559848 -106302779 + (TA)n Simple_repeat Simple_repeat 1 68 0 2238 278 70 43 chr9 11560447 11561978 -106300649 + L1ME LINE L1 37 1664 -4732 246 234 0 0 chr9 11562090 11562154 -106300473 + L1ME LINE L1 2200 2263 -3952 * 814 233 50 63 chr9 11562152 11562598 -106300029 + L1ME LINE L1 5178 5612 -623 242 309 40 13 chr9 11563101 11563253 -106299374 - MER103 DNA DNA -10 156 1 22 70 0 0 chr9 11564358 11564401 -106298226 + AT_rich Low_complexity Low_complexity 1 43 0 694 266 28 83 chr9 11564797 11565402 -106297225 - L1MEc LINE L1 -5180 1216 645 307 321 230 12 chr9 11566580 11566745 -106295882 - MIR SINE MIR -17 245 45 231 279 0 15 chr9 11568121 11568189 -106294438 + CT-rich Low_complexity Low_complexity 3 69 0 616 268 155 0 chr9 11569506 11569700 -106292927 + MER58A DNA MER1_type 1 224 0 251 229 59 7 chr9 11569945 11570098 -106292529 + (TA)n Simple_repeat Simple_repeat 2 162 0 466 271 8 0 chr9 11571230 11571352 -106291275 + L1MEc LINE L1 2516 2638 -3577 2890 117 2 2 chr9 11571417 11571828 -106290799 + PABL_B LTR ERV1 255 665 -2 2016 198 16 3 chr9 11571830 11572204 -106290423 - MER72 LTR ERV1 -335 387 9 251 277 0 0 chr9 11572677 11572742 -106289885 + MER57-int LTR ERV1 3981 4045 -3373 291 239 0 14 chr9 11572796 11572867 -106289760 + MER57-int LTR ERV1 3302 3371 -2575 1048 215 53 40 chr9 11572876 11573412 -106289215 + MER57-int LTR ERV1 1728 2565 -2558 341 158 0 40 chr9 11573414 11573490 -106289137 + MER57-int LTR ERV1 3846 3918 -2680 * 2945 197 70 102 chr9 11573486 11573926 -106288701 + MER57-int LTR ERV1 3022 3475 -1396 4196 168 38 3 chr9 11573926 11574682 -106287945 + LTR39 LTR ERV1 1 783 0 2945 197 70 102 chr9 11574682 11576146 -106286481 + MER57-int LTR ERV1 3475 4080 -791 1605 237 122 17 chr9 11576201 11576661 -106285966 + MER57-int LTR ERV1 6635 7142 -395 1418 193 83 70 chr9 11576662 11577165 -106285462 + LTR54 LTR ERV1 1 510 0 256 33 0 0 chr9 11577168 11577198 -106285429 - MSTB2 LTR MaLR -385 72 43 4868 263 71 20 chr9 11577218 11577245 -106285382 - MSTB1-int LTR MaLR -7 1644 1620 1637 210 125 70 chr9 11577245 11577934 -106284693 - LTR8A LTR ERV1 0 727 1 4868 263 71 20 chr9 11577934 11579507 -106283120 - MSTB1-int LTR MaLR -31 1620 28 939 242 68 37 chr9 11579516 11579911 -106282716 - MSTB1 LTR MaLR 0 432 1 * 6046 145 19 21 chr9 11579911 11580940 -106281687 + Tigger1 DNA MER2_type 638 1664 -754 742 175 0 8 chr9 11580936 11581062 -106281565 + Tigger1 DNA MER2_type 2285 2409 -9 * 1184 196 25 21 chr9 11581062 11581342 -106281285 + L1MC2 LINE L1 6053 6333 -11 393 290 95 12 chr9 11581442 11581611 -106281016 + L1ME3A LINE L1 5755 5937 -233 999 310 47 48 chr9 11581879 11582457 -106280170 + L1P4 LINE L1 788 1364 -6210 340 340 0 10 chr9 11582601 11582704 -106279923 + L1P4 LINE L1 2081 2182 -5399 2186 269 52 19 chr9 11582930 11583662 -106278965 + L1P4 LINE L1 2172 2927 -4654 11402 239 31 31 chr9 11583669 11585329 -106277298 + L1P4 LINE L1 3280 4938 -2666 216 67 0 0 chr9 11585329 11585359 -106277268 + (CAA)n Simple_repeat Simple_repeat 1 30 0 11402 239 31 31 chr9 11585359 11587413 -106275214 + L1P4 LINE L1 4938 6982 -622 1646 278 26 7 chr9 11587407 11588025 -106274602 - L1M4 LINE L1 -2283 3863 3234 * 198 108 81 0 chr9 11588112 11588186 -106274441 + (TA)n Simple_repeat Simple_repeat 1 80 0 1416 265 131 10 chr9 11588262 11588865 -106273762 + L1ME1 LINE L1 5351 6026 -140 265 353 122 0 chr9 11589577 11589716 -106272911 - MIR3 SINE MIR -14 194 39 2373 57 0 38 chr9 11590311 11590625 -106272002 + AluY SINE Alu 1 302 -9 240 320 143 7 chr9 11590722 11590869 -106271758 + MIR SINE MIR 36 202 -60 267 54 0 0 chr9 11591244 11591281 -106271346 + (TTTG)n Simple_repeat Simple_repeat 1 37 0 1586 143 14 38 chr9 11591281 11591568 -106271059 - AluSx SINE Alu -32 280 1 301 390 14 14 chr9 11592014 11592237 -106270390 - ERVL LTR ERVL -4049 1715 1493 655 325 66 12 chr9 11592375 11592707 -106269920 - ERVL LTR ERVL -3796 1200 851 252 345 61 12 chr9 11592889 11593300 -106269327 - L1M4 LINE L1 -3448 2698 2268 43 20 0 0 chr9 11593538 11593588 -106269039 + AT_rich Low_complexity Low_complexity 1 50 0 1163 109 5 5 chr9 11593589 11593773 -106268854 - L1MA1 LINE L1 -1 6301 6118 1211 156 49 8 chr9 11593776 11594020 -106268607 + Tigger2 DNA MER2_type 2455 2708 -10 22 56 0 0 chr9 11594269 11594305 -106268322 + AT_rich Low_complexity Low_complexity 1 36 0 1230 225 75 28 chr9 11594406 11594726 -106267901 - MLT1B LTR MaLR -55 335 1 668 258 19 43 chr9 11594870 11595289 -106267338 - L1ME1 LINE L1 -98 6068 5599 570 302 212 38 chr9 11595310 11596069 -106266558 - HAL1 LINE L1 -1551 956 66 198 0 0 0 chr9 11596750 11596772 -106265855 + (T)n Simple_repeat Simple_repeat 1 22 0 1056 120 204 0 chr9 11597441 11597632 -106264995 + MER30 DNA MER1_type 1 230 0 1690 166 20 17 chr9 11597675 11597977 -106264650 + AluJb SINE Alu 2 304 -8 244 269 0 0 chr9 11598751 11598803 -106263824 + (TG)n Simple_repeat Simple_repeat 2 53 0 762 211 69 6 chr9 11599385 11599560 -106263067 - L1MB3 LINE L1 -1 6182 5997 2027 163 12 58 chr9 11600509 11600938 -106261689 + L1MA7 LINE L1 5883 6291 0 23 0 0 0 chr9 11601453 11601476 -106261151 + AT_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr9 11601582 11601636 -106260991 + AT_rich Low_complexity Low_complexity 1 54 0 1050 255 102 6 chr9 11602697 11603050 -106259577 - MLT1B LTR MaLR -3 387 1 190 421 40 16 chr9 11603156 11603282 -106259345 + L2 LINE L2 3142 3270 -2 213 240 0 0 chr9 11603647 11603722 -106258905 + (CA)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr9 11603790 11603811 -106258816 + AT_rich Low_complexity Low_complexity 1 21 0 3086 155 24 7 chr9 11604193 11604730 -106257897 - LTR38 LTR ERV1 0 556 11 35 0 0 0 chr9 11605191 11605226 -106257401 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr9 11605408 11605437 -106257190 + AT_rich Low_complexity Low_complexity 1 29 0 2987 241 61 10 chr9 11605541 11606506 -106256121 + Charlie5 DNA MER1_type 1 1000 -1612 4238 179 55 30 chr9 11606541 11607229 -106255398 + Charlie5 DNA MER1_type 1496 2165 -459 2241 78 7 20 chr9 11607229 11607535 -106255092 - AluSp SINE Alu -11 302 1 4238 179 55 30 chr9 11607535 11607654 -106254973 + Charlie5 DNA MER1_type 2165 2280 -344 2164 147 108 5 chr9 11607654 11608042 -106254585 - MSTA LTR MaLR 0 428 1 4238 179 55 30 chr9 11608042 11608322 -106254305 + Charlie5 DNA MER1_type 2280 2611 -13 207 0 0 0 chr9 11608932 11608955 -106253672 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr9 11609940 11609963 -106252664 + (A)n Simple_repeat Simple_repeat 1 23 0 284 330 11 0 chr9 11610824 11610915 -106251712 + MIR SINE MIR 171 262 0 21 0 0 0 chr9 11612515 11612536 -106250091 + AT_rich Low_complexity Low_complexity 1 21 0 968 235 15 0 chr9 11613265 11613469 -106249158 + MER58A DNA MER1_type 9 215 -9 22 0 0 0 chr9 11614977 11614999 -106247628 + AT_rich Low_complexity Low_complexity 1 22 0 1523 235 166 34 chr9 11615348 11615901 -106246726 + MLT1E2 LTR MaLR 1 626 0 676 212 66 0 chr9 11616550 11616701 -106245926 + L1MC/D LINE L1 4051 4211 -1935 2627 116 6 0 chr9 11616701 11617063 -106245564 + THE1B LTR MaLR 1 364 0 9625 113 48 37 chr9 11617063 11618626 -106244001 + THE1B-int LTR MaLR 1 1580 0 2265 117 0 67 chr9 11618626 11618943 -106243684 + THE1B LTR MaLR 1 289 -75 2762 74 22 0 chr9 11618943 11619310 -106243317 - L1PA8 LINE L1 -4 6168 5794 2265 117 0 67 chr9 11619310 11619378 -106243249 + THE1B LTR MaLR 289 360 -4 3073 92 5 0 chr9 11619404 11619829 -106242798 + L1PA6 LINE L1 5728 6154 0 2606 249 20 23 chr9 11619829 11620714 -106241913 + L1MC/D LINE L1 4233 5115 -1031 1777 156 104 42 chr9 11622116 11622305 -106240322 + MSTA LTR MaLR 1 177 -251 2133 102 0 3 chr9 11622305 11622627 -106240000 + AluSg SINE Alu 1 321 0 1777 156 104 42 chr9 11622627 11622839 -106239788 + MSTA LTR MaLR 177 428 0 2110 213 54 10 chr9 11623316 11623944 -106238683 + L1MC/D LINE L1 5114 5769 -575 3847 168 45 4 chr9 11623945 11624628 -106237999 - MER50 LTR ERV1 -23 711 1 717 254 110 19 chr9 11624643 11624852 -106237775 - LTR48 LTR ERV1 -559 228 1 469 259 22 87 chr9 11625022 11625207 -106237420 - LTR48-int LTR ERV1 -223 4713 4541 * 5483 148 26 16 chr9 11625203 11625756 -106236871 - LTR49-int LTR ERV1 -541 5790 5221 2045 188 30 5 chr9 11625756 11626149 -106236478 + MER57A LTR ERV1 1 403 0 5483 148 26 16 chr9 11626149 11626605 -106236022 - LTR49-int LTR ERV1 -1110 5221 4771 555 190 70 28 chr9 11626605 11626747 -106235880 + LTR23 LTR ERV1 3 150 -287 6545 116 19 11 chr9 11626810 11627856 -106234771 - L1MA1 LINE L1 0 6302 5252 389 206 246 0 chr9 11627833 11627959 -106234668 - L1 LINE L1 -2423 5142 4986 * 995 188 45 0 chr9 11627963 11628139 -106234488 + AluSg/x SINE Alu 107 290 -22 19542 180 28 12 chr9 11628139 11628505 -106234122 - L1 LINE L1 -2584 4981 4622 1957 152 3 0 chr9 11628505 11628802 -106233825 + AluSx SINE Alu 1 298 -14 19542 180 28 12 chr9 11628802 11629923 -106232704 - L1 LINE L1 -2943 4622 3521 614 48 0 12 chr9 11629923 11630006 -106232621 + (TTCC)n Simple_repeat Simple_repeat 4 85 0 19542 180 28 12 chr9 11630006 11630145 -106232482 - L1 LINE L1 -4044 3521 3386 1204 109 47 0 chr9 11630145 11630337 -106232290 - L1PA13 LINE L1 -4 6159 5959 19542 180 28 12 chr9 11630337 11633595 -106229032 - L1 LINE L1 -4179 3386 16 1375 149 3 57 chr9 11633645 11633927 -106228700 + LTR23 LTR ERV1 161 427 -10 558 267 69 69 chr9 11633936 11634198 -106228429 - LTR49-int LTR ERV1 -1560 4771 4510 2152 172 41 111 chr9 11634198 11634570 -106228057 - LTR49-int LTR ERV1 -1935 4396 4100 2007 126 0 3 chr9 11634570 11634856 -106227771 + AluSx SINE Alu 1 285 -27 2152 172 41 111 chr9 11634856 11635220 -106227407 - LTR49-int LTR ERV1 -2231 4100 3712 717 180 0 16 chr9 11635307 11635435 -106227192 + FLAM_C SINE Alu 1 126 -7 1085 175 53 77 chr9 11635451 11635788 -106226839 - LTR49-int LTR ERV1 -2651 3680 3352 6322 208 57 57 chr9 11635823 11636471 -106226156 - LTR49-int LTR ERV1 -2964 3367 2721 235 182 0 0 chr9 11636471 11636515 -106226112 + MER54B LTR ERVL 746 789 -4 6322 208 57 57 chr9 11636515 11637519 -106225108 - LTR49-int LTR ERV1 -3610 2721 1671 424 100 0 0 chr9 11637519 11637579 -106225048 - Alu SINE Alu -250 60 1 324 205 36 36 chr9 11637579 11637662 -106224965 - LTR49-int LTR ERV1 -4712 1619 1537 1274 170 150 42 chr9 11637924 11638330 -106224297 + LTR7 LTR ERV1 1 450 0 429 191 35 9 chr9 11638330 11638445 -106224182 + HERVH LTR ERV1 1 118 -7595 256 175 0 0 chr9 11638445 11638485 -106224142 + LTR7 LTR ERV1 411 450 0 1549 208 0 13 chr9 11638748 11639051 -106223576 - AluJb SINE Alu -13 299 1 320 274 12 12 chr9 11639383 11639467 -106223160 - MER58B DNA MER1_type -18 323 240 441 142 50 5 chr9 11639470 11639577 -106223050 - MER39 LTR ERV1 -4 703 447 1850 170 55 32 chr9 11639579 11639916 -106222711 + MER61C LTR ERV1 1 337 -97 1899 121 0 7 chr9 11639916 11640217 -106222410 + AluSc SINE Alu 1 299 0 1850 170 55 32 chr9 11640217 11640318 -106222309 + MER61C LTR ERV1 337 434 0 * 2122 244 76 37 chr9 11640318 11640966 -106221661 - LTR48 LTR ERV1 -113 674 1 1198 234 68 57 chr9 11641104 11641619 -106221008 - MER39 LTR ERV1 0 707 4 1627 166 86 12 chr9 11641806 11642144 -106220483 + MER47A DNA MER2_type 2 364 -2 253 289 197 73 chr9 11643574 11643792 -106218835 + MIR SINE MIR 6 250 -12 237 363 73 22 chr9 11644963 11645280 -106217347 - L2 LINE L2 -1230 2084 1752 246 81 0 0 chr9 11645349 11645386 -106217241 + (TA)n Simple_repeat Simple_repeat 1 37 0 266 273 15 15 chr9 11645471 11645537 -106217090 - L2 LINE L2 -6 3266 3201 252 374 9 61 chr9 11645678 11645892 -106216735 - L2 LINE L2 -213 3059 2857 236 366 30 8 chr9 11646289 11646423 -106216204 - L2 LINE L2 -963 2351 2215 275 202 48 29 chr9 11647587 11647691 -106214936 + (TCTA)n Simple_repeat Simple_repeat 4 109 0 26 30 0 0 chr9 11647923 11647956 -106214671 + AT_rich Low_complexity Low_complexity 1 33 0 782 236 6 0 chr9 11647963 11648124 -106214503 - FAM SINE Alu -13 162 1 210 296 0 0 chr9 11648141 11648195 -106214432 + (TG)n Simple_repeat Simple_repeat 2 55 0 2504 68 0 0 chr9 11648445 11648753 -106213874 + AluY SINE Alu 1 308 -3 1695 104 39 0 chr9 11648947 11649178 -106213449 + AluSx SINE Alu 1 240 -72 567 328 134 8 chr9 11649270 11649651 -106212976 + MLT1J2 LTR MaLR 3 431 -19 312 285 165 19 chr9 11650178 11650336 -106212291 - MIR SINE MIR -56 206 26 270 132 0 0 chr9 11652343 11652396 -106210231 + (TG)n Simple_repeat Simple_repeat 2 54 0 2516 113 16 3 chr9 11653254 11653624 -106209003 + THE1C LTR MaLR 1 375 0 677 45 11 0 chr9 11654904 11654993 -106207634 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 1022 205 9 14 chr9 11654993 11655208 -106207419 - AluJo SINE Alu -12 300 87 613 158 82 54 chr9 11655469 11655653 -106206974 + MER53 DNA DNA 1 189 0 223 218 18 0 chr9 11656964 11657019 -106205608 + (TA)n Simple_repeat Simple_repeat 2 57 0 1911 203 44 7 chr9 11657196 11657605 -106205022 + MSTB LTR MaLR 1 424 -2 1117 246 141 17 chr9 11657708 11658127 -106204500 - MLT1D LTR MaLR -34 471 1 26 30 0 0 chr9 11658619 11658652 -106203975 + AT_rich Low_complexity Low_complexity 1 33 0 225 313 0 10 chr9 11658848 11658947 -106203680 + (TTAA)n Simple_repeat Simple_repeat 1 98 0 25 0 0 0 chr9 11658985 11659010 -106203617 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr9 11659238 11659266 -106203361 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr9 11659320 11659350 -106203277 + AT_rich Low_complexity Low_complexity 1 30 0 2189 64 0 0 chr9 11659460 11659727 -106202900 - AluY SINE Alu -44 267 1 2079 123 0 0 chr9 11659791 11660095 -106202532 + AluSq SINE Alu 2 305 0 23 0 0 0 chr9 11660699 11660722 -106201905 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 11661087 11661115 -106201512 + AT_rich Low_complexity Low_complexity 1 28 0 290 151 0 0 chr9 11661235 11661288 -106201339 - MER41B LTR ERV1 -100 535 483 293 294 0 0 chr9 11661324 11661409 -106201218 + A-rich Low_complexity Low_complexity 1 85 0 2289 107 24 0 chr9 11661582 11661919 -106200708 - L1PA10 LINE L1 -1 6167 5823 7369 196 46 12 chr9 11662620 11665826 -106196801 + L1MA4 LINE L1 22 7705 -14 207 0 0 0 chr9 11665850 11665873 -106196754 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2385 77 3 0 chr9 11667174 11667484 -106195143 + AluY SINE Alu 1 311 0 31 26 0 0 chr9 11667678 11667716 -106194911 + AT_rich Low_complexity Low_complexity 1 38 0 1720 173 3 0 chr9 11670120 11670404 -106192223 + AluSx SINE Alu 1 285 -27 230 252 92 25 chr9 11670501 11670620 -106192007 + MLT1L LTR MaLR 481 607 -8 24 0 0 0 chr9 11671424 11671448 -106191179 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr9 11673350 11673380 -106189247 + AT_rich Low_complexity Low_complexity 1 30 0 218 177 0 48 chr9 11674401 11674463 -106188164 + GA-rich Low_complexity Low_complexity 2 60 0 1275 259 86 23 chr9 11674571 11674852 -106187775 + L1ME1 LINE L1 4372 4634 -1512 1879 187 25 129 chr9 11674852 11674983 -106187644 - LTR9 LTR ERV1 0 612 469 1481 133 130 11 chr9 11674983 11675277 -106187350 + AluSx SINE Alu 2 312 0 1879 187 25 129 chr9 11675277 11675828 -106186799 - LTR9 LTR ERV1 -143 469 1 1275 259 86 23 chr9 11675828 11676152 -106186475 + L1ME1 LINE L1 4634 5015 -1131 * 1339 230 69 19 chr9 11676126 11676548 -106186079 + L1ME1 LINE L1 5719 6161 -5 853 175 148 27 chr9 11676717 11676940 -106185687 + LTR48 LTR ERV1 1 250 -537 485 244 91 17 chr9 11678106 11678282 -106184345 - MIR SINE MIR 0 262 74 201 358 15 45 chr9 11679045 11679179 -106183448 - MIR SINE MIR -109 153 24 294 50 0 0 chr9 11679541 11679581 -106183046 + (TC)n Simple_repeat Simple_repeat 1 40 0 1064 349 49 25 chr9 11679823 11680450 -106182177 - L2 LINE L2 -830 2484 1843 252 290 54 11 chr9 11680644 11680737 -106181890 + L1ME LINE L1 5497 5593 -573 200 211 0 0 chr9 11680812 11680850 -106181777 + (TTAG)n Simple_repeat Simple_repeat 3 40 0 763 323 57 46 chr9 11681376 11681937 -106180690 - L2 LINE L2 -1485 1829 1263 24 0 0 0 chr9 11681940 11681964 -106180663 + AT_rich Low_complexity Low_complexity 1 24 0 802 343 102 21 chr9 11682065 11682625 -106180002 + L2 LINE L2 1935 2541 -773 415 298 37 46 chr9 11682625 11682809 -106179818 - MER5B DNA MER1_type -1 177 10 274 398 37 12 chr9 11682900 11683061 -106179566 + L2 LINE L2 2608 2772 -542 605 366 12 4 chr9 11683309 11683560 -106179067 - MIR SINE MIR -2 260 8 5613 159 11 44 chr9 11683593 11684160 -106178467 - L1MA10 LINE L1 0 6334 5750 1544 126 57 4 chr9 11684160 11684407 -106178220 - AluSq SINE Alu -9 304 45 5613 159 11 44 chr9 11684407 11685129 -106177498 - L1MA10 LINE L1 -584 5750 5078 25 0 0 0 chr9 11688337 11688362 -106174265 + AT_rich Low_complexity Low_complexity 1 25 0 390 151 0 0 chr9 11688849 11688935 -106173692 + L1PA12 LINE L1 5932 6017 -151 1876 153 3 0 chr9 11689079 11689387 -106173240 - AluSx SINE Alu -3 309 1 972 338 24 16 chr9 11689424 11689967 -106172660 + L2 LINE L2 2683 3313 0 265 310 35 35 chr9 11689975 11690117 -106172510 + MIR SINE MIR 81 222 -40 21 0 0 0 chr9 11690554 11690575 -106172052 + AT_rich Low_complexity Low_complexity 1 21 0 3533 125 64 8 chr9 11691324 11691932 -106170695 - LTR12 LTR ERV1 0 1797 130 219 200 20 0 chr9 11692527 11692577 -106170050 + (TA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr9 11693214 11693236 -106169391 + AT_rich Low_complexity Low_complexity 1 22 0 268 273 22 22 chr9 11693240 11693379 -106169248 + L1M4 LINE L1 2853 2991 -3155 24 0 0 0 chr9 11693837 11693861 -106168766 + AT_rich Low_complexity Low_complexity 1 24 0 342 286 121 29 chr9 11693973 11694179 -106168448 + L1M4 LINE L1 3596 3820 -2326 33 0 0 0 chr9 11694465 11694498 -106168129 + AT_rich Low_complexity Low_complexity 1 33 0 24 67 0 0 chr9 11694676 11694721 -106167906 + AT_rich Low_complexity Low_complexity 1 45 0 32 76 0 11 chr9 11694784 11694841 -106167786 + AT_rich Low_complexity Low_complexity 1 58 -33 2028 134 3 0 chr9 11694841 11695131 -106167496 + AluSx SINE Alu 1 291 -21 32 76 0 11 chr9 11695131 11695165 -106167462 + AT_rich Low_complexity Low_complexity 58 91 0 1940 229 61 28 chr9 11695242 11695846 -106166781 - MER92B LTR ERV1 -12 624 1 23 78 0 0 chr9 11696490 11696541 -106166086 + AT_rich Low_complexity Low_complexity 1 51 0 813 150 36 7 chr9 11697412 11697552 -106165075 - MSTA LTR MaLR -284 144 1 304 221 44 44 chr9 11697552 11697647 -106164980 + MER34 LTR ERV1 29 123 -419 225 256 0 0 chr9 11697780 11697823 -106164804 + MER34 LTR ERV1 1 43 -499 2285 113 8 11 chr9 11697902 11698256 -106164371 - THE1A LTR MaLR 0 355 3 10654 113 8 14 chr9 11698258 11699848 -106162779 - THE1A-int LTR MaLR 0 1580 1 1999 128 66 9 chr9 11699849 11700184 -106162443 - THE1A LTR MaLR -1 354 1 251 54 27 0 chr9 11700410 11700447 -106162180 + (GA)n Simple_repeat Simple_repeat 1 38 0 310 280 65 0 chr9 11700454 11700561 -106162066 - MIR SINE MIR -76 186 73 2708 183 14 45 chr9 11700619 11701139 -106161488 - MER34 LTR ERV1 0 542 39 2422 138 44 7 chr9 11701139 11701552 -106161075 + MSTA LTR MaLR 1 428 0 2708 183 14 45 chr9 11701552 11701590 -106161037 - MER34 LTR ERV1 -503 39 1 37 23 0 0 chr9 11702255 11702299 -106160328 + AT_rich Low_complexity Low_complexity 1 44 0 321 356 16 31 chr9 11703201 11703395 -106159232 + L1MEc LINE L1 110 300 -6096 338 314 101 13 chr9 11703417 11703576 -106159051 + MLT1K LTR MaLR 336 508 -80 511 226 102 0 chr9 11704701 11704838 -106157789 + L1MD3 LINE L1 7735 7885 -110 293 222 141 0 chr9 11704939 11705038 -106157589 + L1MD3 LINE L1 7860 7972 -23 186 333 98 8 chr9 11705276 11705399 -106157228 + L2 LINE L2 2926 3059 -213 694 263 103 30 chr9 11706058 11706495 -106156132 - Charlie2 DNA MER1_type 0 2862 2394 858 308 91 42 chr9 11706497 11707177 -106155450 - L2 LINE L2 -552 2762 1958 487 253 121 20 chr9 11707232 11707430 -106155197 + L1MA10 LINE L1 6117 6334 0 339 328 22 0 chr9 11707430 11707564 -106155063 - L2 LINE L2 -1347 1967 1831 * 604 266 72 69 chr9 11707559 11707879 -106154748 - L2 LINE L2 -1622 1692 1372 2177 112 0 3 chr9 11708191 11708494 -106154133 - AluSg SINE Alu -8 302 1 191 279 101 13 chr9 11708852 11708931 -106153696 - MIR SINE MIR -96 166 81 26 0 0 0 chr9 11710762 11710788 -106151839 + AT_rich Low_complexity Low_complexity 1 26 0 281 325 67 25 chr9 11712607 11712727 -106149900 - L2 LINE L2 0 3272 3148 655 153 0 8 chr9 11712734 11712852 -106149775 + L1MC/D LINE L1 5458 5574 -759 214 457 16 0 chr9 11712910 11713037 -106149590 - L2 LINE L2 -248 3024 2896 300 295 72 97 chr9 11713275 11713348 -106149279 + MLT1K LTR MaLR 208 281 -307 309 26 0 0 chr9 11713348 11713386 -106149241 + (TG)n Simple_repeat Simple_repeat 2 39 0 300 295 72 97 chr9 11713386 11713590 -106149037 + MLT1K LTR MaLR 281 478 -110 23 54 0 0 chr9 11713713 11713750 -106148877 + AT_rich Low_complexity Low_complexity 1 37 0 1851 139 45 27 chr9 11714040 11714371 -106148256 - MER1B DNA MER1_type 0 337 1 294 100 0 20 chr9 11714393 11714465 -106148162 + AluSc SINE Alu 247 299 0 2251 156 5 24 chr9 11715376 11715786 -106146841 - MER41B LTR ERV1 0 635 234 2657 98 93 5 chr9 11715793 11716200 -106146427 - LTR7 LTR ERV1 -7 443 1 1345 150 48 0 chr9 11716200 11716427 -106146200 - MER41B LTR ERV1 -397 238 1 186 71 0 0 chr9 11716476 11716504 -106146123 + (T)n Simple_repeat Simple_repeat 1 28 0 5263 149 15 52 chr9 11717534 11718934 -106143693 + L1PA16 LINE L1 4795 6166 0 819 264 158 0 chr9 11718978 11719243 -106143384 + MLT1A1 LTR MaLR 56 362 -3 24 0 0 0 chr9 11720281 11720305 -106142322 + AT_rich Low_complexity Low_complexity 1 24 0 2090 110 17 0 chr9 11720479 11720779 -106141848 + AluSc SINE Alu 1 305 -4 23 54 0 0 chr9 11721007 11721044 -106141583 + AT_rich Low_complexity Low_complexity 1 37 0 2777 195 75 37 chr9 11721335 11722072 -106140555 + L1MD1 LINE L1 5478 6242 0 324 309 21 42 chr9 11722053 11722244 -106140383 + L1MEc LINE L1 1615 1801 -4595 * 398 319 44 54 chr9 11722382 11722699 -106139928 + L1MEc LINE L1 1731 2044 -4352 1206 259 21 16 chr9 11722715 11723139 -106139488 + L1MEc LINE L1 2256 2681 -3534 33 0 0 0 chr9 11723453 11723486 -106139141 + AT_rich Low_complexity Low_complexity 1 33 0 2229 88 0 0 chr9 11723493 11723815 -106138812 + AluY SINE Alu 1 322 0 2035 143 0 3 chr9 11723985 11724292 -106138335 - AluSx SINE Alu -6 306 1 21 0 0 0 chr9 11724452 11724473 -106138154 + AT_rich Low_complexity Low_complexity 1 21 0 2224 121 0 3 chr9 11724649 11724962 -106137665 + AluSx SINE Alu 1 312 0 367 233 134 35 chr9 11725071 11725243 -106137384 + L1MC5 LINE L1 7712 7900 -61 1790 127 32 49 chr9 11725280 11725588 -106137039 + AluSx SINE Alu 1 303 -9 502 224 8 75 chr9 11725745 11725855 -106136772 + FLAM_A SINE Alu 1 102 -200 1999 122 37 0 chr9 11725855 11726149 -106136478 - AluSp SINE Alu -8 305 1 502 224 8 75 chr9 11726149 11726172 -106136455 + FLAM_A SINE Alu 102 125 -177 268 217 11 65 chr9 11726252 11726344 -106136283 + L2 LINE L2 2234 2320 -994 23 33 0 0 chr9 11726349 11726379 -106136248 + AT_rich Low_complexity Low_complexity 1 30 0 2175 131 33 6 chr9 11727073 11727408 -106135219 + MER41A LTR ERV1 1 344 -210 1724 140 0 23 chr9 11727408 11727673 -106134954 + AluSx SINE Alu 1 259 -53 180 97 0 0 chr9 11727673 11727704 -106134923 + (A)n Simple_repeat Simple_repeat 1 31 0 2112 114 3 0 chr9 11727716 11728006 -106134621 + AluSq SINE Alu 3 293 -20 25 0 0 0 chr9 11728254 11728279 -106134348 + AT_rich Low_complexity Low_complexity 1 25 0 2101 104 3 27 chr9 11728306 11728604 -106134023 - AluSg SINE Alu -19 291 1 2041 101 6 38 chr9 11728711 11729029 -106133598 + AluSp SINE Alu 5 312 -1 241 292 135 22 chr9 11729699 11729788 -106132839 - MIR SINE MIR -78 130 32 1117 221 0 32 chr9 11729822 11730075 -106132552 - L1MC3 LINE L1 -993 6792 6548 214 304 14 29 chr9 11730726 11730795 -106131832 + L2 LINE L2 3245 3312 -1 2116 160 38 30 chr9 11731241 11731790 -106130837 + MLT2A2 LTR ERVL 1 554 0 191 311 170 7 chr9 11731805 11731940 -106130687 + MIR SINE MIR 95 251 -11 416 226 81 24 chr9 11732261 11732385 -106130242 - L2 LINE L2 0 3313 3183 673 295 71 5 chr9 11732512 11732736 -106129891 - MIR SINE MIR -11 251 13 22 0 0 0 chr9 11733029 11733051 -106129576 + AT_rich Low_complexity Low_complexity 1 22 0 261 297 66 0 chr9 11734199 11734290 -106128337 + MIR SINE MIR 104 200 -62 34 42 0 0 chr9 11734400 11734448 -106128179 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr9 11734752 11734778 -106127849 + AT_rich Low_complexity Low_complexity 1 26 0 1505 167 66 74 chr9 11734900 11735278 -106127349 + THE1C LTR MaLR 1 375 0 9425 126 63 6 chr9 11735278 11736773 -106125854 + THE1C-int LTR MaLR 1 1580 0 1627 147 55 68 chr9 11736773 11737153 -106125474 + THE1C LTR MaLR 1 375 0 200 286 57 29 chr9 11737632 11737702 -106124925 - MIR SINE MIR -55 153 82 2559 39 0 7 chr9 11737898 11738206 -106124421 - AluY SINE Alu -5 306 1 262 257 14 0 chr9 11738270 11738344 -106124283 + (TG)n Simple_repeat Simple_repeat 1 75 0 395 243 98 75 chr9 11738452 11738625 -106124002 - MER5B DNA MER1_type 0 178 2 183 42 0 0 chr9 11739192 11739216 -106123411 + (TG)n Simple_repeat Simple_repeat 1 24 0 29 47 0 0 chr9 11739470 11739513 -106123114 + AT_rich Low_complexity Low_complexity 1 43 0 5555 117 8 0 chr9 11739556 11740385 -106122242 - L1PA13 LINE L1 -20 6143 5308 332 278 111 12 chr9 11740387 11740518 -106122109 - MIR SINE MIR -57 151 11 269 235 12 0 chr9 11742364 11742449 -106120178 + (TATG)n Simple_repeat Simple_repeat 3 88 0 28 29 0 0 chr9 11742736 11742771 -106119856 + AT_rich Low_complexity Low_complexity 1 35 0 2202 258 69 46 chr9 11745776 11747157 -106115470 - L1ME LINE L1 -500 5600 4199 327 286 165 9 chr9 11747157 11747381 -106115246 - L1ME LINE L1 -2300 3780 3522 1913 262 82 39 chr9 11747381 11748825 -106113802 - L1ME LINE L1 -4575 1505 10 23 0 0 0 chr9 11749099 11749122 -106113505 + AT_rich Low_complexity Low_complexity 1 23 0 219 220 138 88 chr9 11749239 11749398 -106113229 + L2 LINE L2 3110 3276 -37 1413 153 16 28 chr9 11750229 11750478 -106112149 + L1PB3 LINE L1 5909 6154 0 656 288 123 48 chr9 11750940 11750976 -106111651 + L2 LINE L2 2616 2648 -665 3219 43 0 0 chr9 11750976 11751371 -106111256 - L1PA4 LINE L1 -3 6152 5758 656 288 123 48 chr9 11751371 11751878 -106110749 + L2 LINE L2 2648 3215 -98 384 313 40 7 chr9 11751880 11752030 -106110597 - HAL1 LINE L1 -734 1773 1619 707 296 100 34 chr9 11752052 11752730 -106109897 - HAL1 LINE L1 -968 1539 817 3324 261 52 32 chr9 11753204 11754585 -106108042 + L1M4 LINE L1 2553 3961 -2185 11203 41 0 0 chr9 11754585 11755952 -106106675 - L1P LINE L1 -972 5174 3808 2096 195 19 16 chr9 11756314 11756739 -106105888 + MSTB LTR MaLR 1 426 0 8572 185 33 4 chr9 11756739 11758342 -106104285 + MSTB-int LTR MaLR 1 1650 -1 1822 163 79 30 chr9 11758350 11758756 -106103871 + MSTB LTR MaLR 1 426 0 21 0 0 0 chr9 11758908 11758929 -106103698 + AT_rich Low_complexity Low_complexity 1 21 0 288 256 13 0 chr9 11759240 11759318 -106103309 - MER116 DNA Mariner 0 80 2 225 0 0 0 chr9 11760268 11760293 -106102334 + (TG)n Simple_repeat Simple_repeat 2 26 0 615 295 120 0 chr9 11760932 11761166 -106101461 + MIR SINE MIR 1 262 0 272 275 62 12 chr9 11761270 11761350 -106101277 - MIR SINE MIR -6 256 173 369 93 0 0 chr9 11761888 11761942 -106100685 + (TG)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr9 11762965 11762988 -106099639 + AT_rich Low_complexity Low_complexity 1 23 0 629 290 45 77 chr9 11763191 11763543 -106099084 + LTR16C LTR ERVL 151 491 0 267 279 205 31 chr9 11763577 11763738 -106098889 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr9 11764022 11764046 -106098581 + AT_rich Low_complexity Low_complexity 1 24 0 404 251 118 93 chr9 11765826 11765940 -106096687 + HAL1 LINE L1 43 153 -2354 2269 107 7 0 chr9 11765940 11766248 -106096379 + AluSx SINE Alu 1 310 -2 404 251 118 93 chr9 11766248 11766456 -106096171 + HAL1 LINE L1 153 373 -2134 439 343 131 7 chr9 11766464 11766761 -106095866 + HAL1 LINE L1 439 772 -1735 237 238 152 19 chr9 11766797 11767007 -106095620 + HAL1 LINE L1 1029 1266 -1241 440 333 86 17 chr9 11767100 11767334 -106095293 + MIR SINE MIR 4 253 -9 538 339 13 48 chr9 11767352 11767812 -106094815 + HAL1 LINE L1 1641 2084 -423 18943 158 35 12 chr9 11767819 11770253 -106092374 + L1M1 LINE L1 12 2389 -5176 2089 137 6 6 chr9 11770253 11770566 -106092061 + AluSq SINE Alu 1 313 0 18943 158 35 12 chr9 11770566 11770916 -106091711 + L1M1 LINE L1 2389 2730 -4835 3438 128 6 4 chr9 11770916 11771426 -106091201 + MER9 LTR ERVK 1 511 0 18943 158 35 12 chr9 11771426 11771901 -106090726 + L1M1 LINE L1 2730 3346 -4219 11628 181 59 25 chr9 11774066 11775246 -106087381 + L1M1 LINE L1 3334 4472 -3093 2080 139 0 0 chr9 11775246 11775555 -106087072 + AluSx SINE Alu 4 312 0 11628 181 59 25 chr9 11775555 11777422 -106085205 + L1M1 LINE L1 4472 6491 -1074 3204 120 16 0 chr9 11777422 11777933 -106084694 + L1MA3 LINE L1 5783 6305 0 322 277 28 14 chr9 11778132 11778273 -106084354 + HAL1 LINE L1 2237 2379 -128 799 177 96 90 chr9 11778277 11778435 -106084192 + L1MA9 LINE L1 6022 6165 -147 365 39 20 0 chr9 11778435 11778486 -106084141 + (CA)n Simple_repeat Simple_repeat 1 52 0 799 177 96 90 chr9 11778486 11778635 -106083992 + L1MA9 LINE L1 6165 6312 0 228 248 59 59 chr9 11778675 11778776 -106083851 + HAL1 LINE L1 2393 2493 -14 453 355 77 11 chr9 11778790 11778973 -106083654 - MER91A DNA MER1_type 0 196 2 1256 194 131 45 chr9 11779683 11780019 -106082608 + MLT1A1 LTR MaLR 1 365 0 707 296 89 44 chr9 11780660 11781066 -106081561 - L3b LINE CR1 -54 1529 1106 360 292 56 21 chr9 11781447 11781591 -106081036 + MIR3 SINE MIR 54 202 -6 1251 295 102 27 chr9 11781622 11782404 -106080223 - L2 LINE L2 -9 3304 2467 222 139 23 0 chr9 11783558 11783601 -106079026 + (CA)n Simple_repeat Simple_repeat 2 45 0 2034 127 3 7 chr9 11784334 11784626 -106078001 - AluSx SINE Alu -13 299 9 272 352 0 11 chr9 11784674 11784762 -106077865 - L2 LINE L2 -49 3223 3137 583 269 184 3 chr9 11785381 11785697 -106076930 + Charlie2 DNA MER1_type 2471 2843 -19 189 107 0 0 chr9 11785934 11785962 -106076665 + (CA)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr9 11786359 11786384 -106076243 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 11786461 11786490 -106076137 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 11787502 11787525 -106075102 + AT_rich Low_complexity Low_complexity 1 23 0 237 258 0 0 chr9 11787945 11787980 -106074647 + (TG)n Simple_repeat Simple_repeat 1 38 -28 2225 103 0 0 chr9 11787980 11788262 -106074365 - AluSc SINE Alu -25 284 3 237 258 0 0 chr9 11788262 11788292 -106074335 + (TG)n Simple_repeat Simple_repeat 37 66 0 191 167 24 0 chr9 11788458 11788500 -106074127 + (TATG)n Simple_repeat Simple_repeat 3 45 0 189 377 61 0 chr9 11788544 11788658 -106073969 - MIR SINE MIR -122 140 20 297 0 0 0 chr9 11789703 11789736 -106072891 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr9 11789759 11789781 -106072846 + AT_rich Low_complexity Low_complexity 1 22 0 2153 107 71 21 chr9 11790049 11790385 -106072242 - THE1A LTR MaLR 0 355 3 11339 105 1 7 chr9 11790387 11791976 -106070651 - THE1A-int LTR MaLR 0 1580 1 2250 89 86 0 chr9 11791976 11792301 -106070326 - THE1A LTR MaLR 0 355 3 254 326 7 20 chr9 11793356 11793503 -106069124 + GA-rich Low_complexity Low_complexity 3 147 0 29 47 0 0 chr9 11793862 11793905 -106068722 + AT_rich Low_complexity Low_complexity 1 43 0 829 298 39 12 chr9 11794323 11794655 -106067972 - HAL1 LINE L1 -617 1890 1550 366 333 123 4 chr9 11794880 11795123 -106067504 - HAL1 LINE L1 -938 1569 1298 7096 34 2 0 chr9 11795208 11796054 -106066573 - L1PA4 LINE L1 -4 6151 5304 227 254 0 15 chr9 11796063 11796130 -106066497 - L1M4 LINE L1 -2339 3807 3742 461 296 0 0 chr9 11796162 11796314 -106066313 - L1M4 LINE L1 -2390 3756 3605 518 269 88 46 chr9 11796338 11796621 -106066006 + L1ME1 LINE L1 5828 6122 -44 5877 161 24 19 chr9 11797622 11798648 -106063979 + THE1C-int LTR MaLR 549 1580 0 1725 165 51 38 chr9 11798648 11799018 -106063609 + THE1C LTR MaLR 1 375 0 6028 165 28 5 chr9 11799018 11800448 -106062179 + L1MA3 LINE L1 4843 6305 0 424 223 33 25 chr9 11801314 11801435 -106061192 + L1M4 LINE L1 4103 4224 -1922 273 58 58 0 chr9 11801481 11801533 -106061094 + (TTAA)n Simple_repeat Simple_repeat 4 58 0 201 155 52 0 chr9 11801546 11801604 -106061023 + (TTAA)n Simple_repeat Simple_repeat 1 61 0 1057 244 117 22 chr9 11801644 11801711 -106060916 + L1M4 LINE L1 4280 4339 -1807 11821 35 2 1 chr9 11801711 11803926 -106058701 + L1PA4 LINE L1 3928 6152 -3 1057 244 117 22 chr9 11803926 11804187 -106058440 + L1M4 LINE L1 4339 4574 -1572 2466 129 3 3 chr9 11804187 11804551 -106058076 + THE1B LTR MaLR 1 364 0 1057 244 117 22 chr9 11804551 11804724 -106057903 + L1M4 LINE L1 4574 4830 -1316 2143 95 60 0 chr9 11805734 11806019 -106056608 + AluSq SINE Alu 1 302 -11 366 67 0 50 chr9 11806601 11806661 -106055966 - L1PB1 LINE L1 -4 6147 6091 1937 17 0 0 chr9 11806661 11806892 -106055735 - L1P LINE L1 -929 5217 4987 428 38 0 0 chr9 11806892 11806945 -106055682 + L1PA6 LINE L1 6096 6148 -6 2321 187 106 0 chr9 11806966 11807420 -106055207 - L1PB3 LINE L1 -60 6810 6309 11404 125 87 72 chr9 11807422 11808351 -106054276 - L1PB3 LINE L1 -3418 3444 2530 2386 75 3 7 chr9 11808351 11808658 -106053969 - AluY SINE Alu -4 307 2 11404 125 87 72 chr9 11808658 11809032 -106053595 - L1PB3 LINE L1 -4332 2530 2163 1060 78 0 14 chr9 11809032 11809173 -106053454 + AluY SINE Alu 158 296 -15 11404 125 87 72 chr9 11809173 11810495 -106052132 - L1PB3 LINE L1 -4699 2163 636 1153 147 10 5 chr9 11810497 11810694 -106051933 - L1PB3 LINE L1 -6663 200 3 23 54 0 0 chr9 11810766 11810803 -106051824 + AT_rich Low_complexity Low_complexity 1 37 0 180 350 80 29 chr9 11810905 11811042 -106051585 - L3 LINE CR1 -9 1568 1425 239 316 35 18 chr9 11811712 11811826 -106050801 - MLT1I LTR MaLR -16 393 278 21 0 0 0 chr9 11811986 11812007 -106050620 + AT_rich Low_complexity Low_complexity 1 21 0 2027 154 13 34 chr9 11813152 11813534 -106049093 - THE1C LTR MaLR 0 375 2 198 103 0 0 chr9 11813847 11813876 -106048751 + (TA)n Simple_repeat Simple_repeat 2 30 0 2466 49 16 7 chr9 11814263 11814569 -106048058 + AluY SINE Alu 1 309 -2 235 322 11 11 chr9 11814766 11814853 -106047774 - L2 LINE L2 0 3313 3227 1126 205 20 12 chr9 11816653 11816907 -106045720 - Tigger1 DNA MER2_type 0 2418 2163 2356 185 108 1 chr9 11817062 11818715 -106043912 - SATR1 Satellite Satellite -2 1829 1 221 250 11 53 chr9 11818734 11818922 -106043705 + (TAA)n Simple_repeat Simple_repeat 1 180 0 1994 199 95 26 chr9 11819005 11820035 -106042592 + SATR1 Satellite Satellite 1 1101 -18 2059 201 113 12 chr9 11820062 11821656 -106040971 + SATR1 Satellite Satellite 1 1755 -208 3611 164 6 30 chr9 11821661 11822369 -106040258 - Tigger1 DNA MER2_type -288 2130 1440 7518 98 6 11 chr9 11822378 11823427 -106039200 - HERVL LTR ERVL 0 5654 4611 1325 295 41 16 chr9 11823528 11824156 -106038471 - L1P LINE L1 -2923 3223 2580 21 0 0 0 chr9 11824965 11824986 -106037641 + AT_rich Low_complexity Low_complexity 1 21 0 5719 110 3 34 chr9 11825307 11826228 -106036399 - L1PA11 LINE L1 0 6174 5302 23 54 0 0 chr9 11826280 11826317 -106036310 + AT_rich Low_complexity Low_complexity 1 37 0 476 245 13 40 chr9 11826479 11826630 -106035997 + L1ME2 LINE L1 5952 6098 -66 686 167 12 24 chr9 11826959 11827127 -106035500 + CT-rich Low_complexity Low_complexity 4 169 0 26 50 0 0 chr9 11827163 11827203 -106035424 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr9 11827262 11827290 -106035337 + AT_rich Low_complexity Low_complexity 1 28 0 9221 30 0 10 chr9 11827643 11829535 -106033092 - L1PA4 LINE L1 0 6155 4275 26 0 0 0 chr9 11829991 11830017 -106032610 + AT_rich Low_complexity Low_complexity 1 26 0 5041 183 41 22 chr9 11831499 11833257 -106029370 + L1MA9 LINE L1 4495 6292 -20 1589 191 32 0 chr9 11834471 11834754 -106027873 - AluJb SINE Alu -5 307 16 209 128 0 26 chr9 11834835 11834874 -106027753 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2482 59 0 3 chr9 11834981 11835284 -106027343 - AluY SINE Alu -9 302 1 24 67 0 0 chr9 11835538 11835583 -106027044 + AT_rich Low_complexity Low_complexity 1 45 0 298 306 119 15 chr9 11835646 11835780 -106026847 + MIR SINE MIR 57 204 -58 196 346 37 12 chr9 11838792 11838873 -106023754 + MIR SINE MIR 68 150 -58 312 330 27 0 chr9 11839996 11840108 -106022519 + MIR SINE MIR 36 150 -112 219 69 0 0 chr9 11840713 11840742 -106021885 + (TTCTCC)n Simple_repeat Simple_repeat 3 31 0 302 232 14 0 chr9 11841262 11841331 -106021296 - LTR16A LTR ERVL 0 450 381 296 345 30 71 chr9 11841375 11841572 -106021055 - LTR16A LTR ERVL -181 269 81 405 345 92 25 chr9 11841762 11842199 -106020428 - ERVL LTR ERVL -382 5382 4917 866 213 96 5 chr9 11842476 11842664 -106019963 + Tigger7 DNA MER2_type 24 228 -2259 994 362 55 34 chr9 11843223 11843727 -106018900 - ERVL LTR ERVL -1861 3903 3411 2153 152 5 24 chr9 11843727 11844109 -106018518 - THE1C LTR MaLR 0 375 1 9849 123 18 31 chr9 11844109 11845709 -106016918 - THE1C-int LTR MaLR 0 1580 1 2452 127 5 11 chr9 11845709 11846086 -106016541 - THE1C LTR MaLR 0 375 1 994 362 55 34 chr9 11846086 11846653 -106015974 - ERVL LTR ERVL -2352 3412 2736 559 234 6 51 chr9 11846787 11846945 -106015682 + MLT1A1 LTR MaLR 1 151 -214 643 309 32 12 chr9 11846958 11847207 -106015420 - ERVL LTR ERVL -3002 1994 1741 471 348 82 49 chr9 11847282 11847610 -106015017 - ERVL LTR ERVL -3415 1581 1243 1221 291 78 13 chr9 11847646 11848097 -106014530 - ERVL LTR ERVL -3831 1165 686 765 295 82 21 chr9 11848318 11848698 -106013929 - ERVL LTR ERVL -4593 403 1 353 337 95 19 chr9 11848773 11849037 -106013590 - LTR16A LTR ERVL -89 361 78 350 292 8 54 chr9 11849095 11849225 -106013402 - L2 LINE L2 -6 3307 3184 186 429 97 9 chr9 11849442 11849773 -106012854 - L2 LINE L2 -384 2930 2571 385 239 93 133 chr9 11850722 11851023 -106011604 + MLT1J2 LTR MaLR 83 417 -33 45 27 0 27 chr9 11851023 11851080 -106011547 + AT_rich Low_complexity Low_complexity 1 57 -15 1989 92 0 86 chr9 11851080 11851384 -106011243 - AluSq SINE Alu -35 278 1 45 27 0 27 chr9 11851384 11851400 -106011227 + AT_rich Low_complexity Low_complexity 57 72 0 4713 198 91 8 chr9 11852867 11853809 -106008818 - LTR28 LTR ERV1 0 1020 1 1738 172 158 11 chr9 11856000 11856373 -106006254 - MSTA LTR MaLR 0 428 1 8272 153 27 52 chr9 11856373 11857626 -106005001 - MSTA-int LTR MaLR 0 1580 374 2214 117 3 13 chr9 11857626 11857942 -106004685 + AluSp SINE Alu 1 313 0 8272 153 27 52 chr9 11857942 11858306 -106004321 - MSTA-int LTR MaLR -1206 374 3 1806 181 112 20 chr9 11858308 11858700 -106003927 - MSTA LTR MaLR 0 428 1 240 175 12 25 chr9 11859111 11859191 -106003436 + (TA)n Simple_repeat Simple_repeat 2 80 0 75 57 0 0 chr9 11859571 11859695 -106002932 + AT_rich Low_complexity Low_complexity 1 124 0 250 227 193 85 chr9 11860655 11860831 -106001796 - MER112 DNA MER1_type -65 195 1 23 92 0 0 chr9 11862044 11862109 -106000518 + AT_rich Low_complexity Low_complexity 1 65 0 436 183 0 0 chr9 11862128 11862199 -106000428 - AluJ/FLAM SINE Alu -230 82 12 22 0 0 0 chr9 11862395 11862417 -106000210 + AT_rich Low_complexity Low_complexity 1 22 0 759 262 33 19 chr9 11868910 11869120 -105993507 - MIR SINE MIR -28 234 22 2345 94 0 0 chr9 11869702 11870001 -105992626 + AluSx SINE Alu 1 299 -13 2207 146 22 0 chr9 11870537 11870893 -105991734 + THE1B LTR MaLR 1 364 0 10390 120 12 27 chr9 11870893 11872498 -105990129 + THE1B-int LTR MaLR 1 1580 0 2132 166 22 0 chr9 11872498 11872854 -105989773 + THE1B LTR MaLR 1 364 0 1413 131 0 38 chr9 11872962 11873198 -105989429 - MER30 DNA MER1_type 0 230 4 22 56 0 0 chr9 11874748 11874784 -105987843 + AT_rich Low_complexity Low_complexity 1 36 0 2364 93 0 0 chr9 11875206 11875508 -105987119 + AluSc SINE Alu 1 302 -7 295 315 148 0 chr9 11876892 11877000 -105985627 - L2 LINE L2 -33 3239 3116 24 0 0 0 chr9 11877866 11877890 -105984737 + AT_rich Low_complexity Low_complexity 1 24 0 182 319 0 0 chr9 11878128 11878175 -105984452 + MIR SINE MIR 98 144 -64 1003 136 0 26 chr9 11878178 11878360 -105984267 + AluSg/x SINE Alu 135 312 0 208 294 130 11 chr9 11878362 11878454 -105984173 + MIR SINE MIR 136 238 -24 21 89 0 0 chr9 11880285 11880341 -105982286 + AT_rich Low_complexity Low_complexity 1 56 0 381 250 0 0 chr9 11880467 11880555 -105982072 - ERVL LTR ERVL -143 5621 5534 3746 222 63 20 chr9 11880628 11881250 -105981377 - ERVL LTR ERVL -340 5424 4755 2449 212 11 0 chr9 11881250 11881717 -105980910 - MER70A LTR ERVL 0 472 1 3746 222 63 20 chr9 11881717 11881935 -105980692 - ERVL LTR ERVL -1009 4755 4548 584 292 43 11 chr9 11881941 11882175 -105980452 - ERVL LTR ERVL -4901 863 549 6360 183 225 35 chr9 11882175 11883649 -105978978 - MER52A LTR ERV1 0 1755 1 793 301 9 0 chr9 11883649 11883862 -105978765 - ERVL LTR ERVL -5212 552 338 362 163 35 12 chr9 11883947 11884033 -105978594 - L1MCc LINE L1 -6309 114 27 24 53 0 0 chr9 11884395 11884433 -105978194 + AT_rich Low_complexity Low_complexity 1 38 0 3122 113 84 63 chr9 11884970 11885589 -105977038 - L1PB3 LINE L1 0 6154 5523 347 176 17 13 chr9 11885595 11885697 -105976930 + L1M2 LINE L1 5382 5484 -667 2458 65 0 7 chr9 11887395 11887701 -105974926 - AluY SINE Alu -7 304 1 23 54 0 0 chr9 11887842 11887879 -105974748 + AT_rich Low_complexity Low_complexity 1 37 0 462 251 0 0 chr9 11887921 11888084 -105974543 + (CATATA)n Simple_repeat Simple_repeat 5 167 0 387 268 0 0 chr9 11888068 11888225 -105974402 + (TA)n Simple_repeat Simple_repeat 1 157 0 * 656 255 43 64 chr9 11888317 11888736 -105973891 + Charlie1 DNA MER1_type 2343 2752 -9 21 57 0 0 chr9 11889237 11889272 -105973355 + AT_rich Low_complexity Low_complexity 1 35 0 535 159 254 22 chr9 11889894 11890032 -105972595 + HERVK22 LTR ERVK 625 794 -6043 * 34122 87 5 2 chr9 11890015 11894525 -105968102 + HERVK22 LTR ERVK 2314 6837 0 2267 174 65 26 chr9 11894525 11895015 -105967612 + LTR22 LTR ERVK 1 509 0 7148 251 30 28 chr9 11895015 11897550 -105965077 - L1M4 LINE L1 -1357 5025 2485 2076 147 45 14 chr9 11897550 11897903 -105964724 + THE1B LTR MaLR 1 364 0 7148 251 30 28 chr9 11897903 11898129 -105964498 - L1M4 LINE L1 -3897 2485 2261 * 7209 194 33 41 chr9 11898127 11898476 -105964151 - L1M4 LINE L1 -4485 1899 1549 1049 244 13 13 chr9 11898476 11898714 -105963913 - MER8 DNA MER2_type 0 239 2 7209 194 33 41 chr9 11898714 11899400 -105963227 - L1M4 LINE L1 -4835 1549 859 12724 44 0 5 chr9 11899400 11901748 -105960879 - L1PA4 LINE L1 -3 6152 3812 7209 194 33 41 chr9 11901748 11902461 -105960166 - L1M4 LINE L1 -5525 859 163 30 45 0 0 chr9 11902663 11902707 -105959920 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 30 chr9 11903306 11903319 -105959308 + AT_rich Low_complexity Low_complexity 1 13 -19 2415 78 3 0 chr9 11903319 11903614 -105959013 - AluSp SINE Alu -17 296 1 22 0 0 30 chr9 11903614 11903633 -105958994 + AT_rich Low_complexity Low_complexity 13 32 0 41 93 0 0 chr9 11903757 11903875 -105958752 + AT_rich Low_complexity Low_complexity 1 118 0 322 289 122 20 chr9 11904216 11904413 -105958214 - L1M4 LINE L1 -1717 4429 4213 2180 247 29 43 chr9 11904441 11906063 -105956564 + L1MC2 LINE L1 7 1400 -4851 4423 235 64 21 chr9 11906065 11908503 -105954124 + L1MC2 LINE L1 4086 6615 -9 1952 106 8 0 chr9 11908771 11909035 -105953592 - AluSx SINE Alu -36 276 11 25 31 0 0 chr9 11909045 11909077 -105953550 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr9 11909134 11909169 -105953458 + AT_rich Low_complexity Low_complexity 1 35 0 307 291 82 38 chr9 11909312 11909470 -105953157 - L2 LINE L2 -1 3312 3148 360 324 52 0 chr9 11909985 11910121 -105952506 - L2 LINE L2 -231 3082 2940 353 320 77 17 chr9 11910138 11910319 -105952308 - L2 LINE L2 -511 2803 2612 721 272 14 115 chr9 11910325 11910811 -105951816 - LTR16B LTR ERVL 0 464 28 270 278 0 9 chr9 11910822 11910930 -105951697 - L1MA3 LINE L1 0 6305 6199 * 479 157 25 9 chr9 11910877 11910990 -105951637 + L1MA5 LINE L1 5826 5946 -241 284 321 53 8 chr9 11911019 11911150 -105951477 - L2 LINE L2 -710 2604 2468 43 56 0 0 chr9 11911642 11911713 -105950914 + AT_rich Low_complexity Low_complexity 1 71 0 1040 157 12 0 chr9 11911901 11912067 -105950560 - AluSg/x SINE Alu -15 297 130 750 201 13 0 chr9 11912207 11912356 -105950271 + FRAM SINE Alu 10 160 -16 1037 184 8 3 chr9 11912461 11912678 -105949949 - L1MDa LINE L1 -3814 2726 2511 427 256 138 0 chr9 11913030 11913190 -105949437 + L2 LINE L2 487 668 -2646 354 332 31 62 chr9 11913507 11913733 -105948894 + HAL1 LINE L1 712 930 -1577 1828 181 39 16 chr9 11913968 11914354 -105948273 + L1MA9 LINE L1 5435 5829 -483 1330 261 59 50 chr9 11914474 11915136 -105947491 + L1ME2 LINE L1 5457 6124 -40 37 62 0 0 chr9 11915136 11915201 -105947426 + AT_rich Low_complexity Low_complexity 1 65 0 694 292 74 3 chr9 11915319 11915617 -105947010 + HAL1 LINE L1 1459 1777 -730 515 329 31 45 chr9 11915621 11915913 -105946714 + L2 LINE L2 2856 3143 -170 2076 163 28 3 chr9 11915913 11916268 -105946359 - THE1B LTR MaLR 0 364 1 8900 126 32 82 chr9 11916268 11917931 -105944696 - THE1B-int LTR MaLR 0 1580 1 2118 145 22 6 chr9 11917931 11918289 -105944338 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr9 11918296 11918331 -105944296 + AT_rich Low_complexity Low_complexity 1 35 0 201 307 80 0 chr9 11918451 11918526 -105944101 + L2 LINE L2 3229 3309 -4 186 315 0 55 chr9 11919444 11919517 -105943110 + MIR3 SINE MIR 97 165 -43 3652 201 21 52 chr9 11919865 11919945 -105942682 - L1MB1 LINE L1 -1 6167 6086 2347 153 32 25 chr9 11919945 11920376 -105942251 + Tigger2a DNA MER2_type 1 434 0 3652 201 21 52 chr9 11920376 11921118 -105941509 - L1MB1 LINE L1 -82 6086 5368 2520 60 0 0 chr9 11921118 11921420 -105941207 - AluY SINE Alu -9 302 1 3652 201 21 52 chr9 11921420 11921549 -105941078 - L1MB1 LINE L1 -800 5368 5237 499 171 0 0 chr9 11921580 11921656 -105940971 - THE1-int LTR MaLR -454 1126 1051 2122 155 80 6 chr9 11921657 11922018 -105940609 - MSTA LTR MaLR -38 390 3 8531 170 34 16 chr9 11922020 11923641 -105938986 - MSTA-int LTR MaLR 0 1651 2 2056 126 102 42 chr9 11923642 11923683 -105938944 - MSTA LTR MaLR 0 428 391 2071 142 3 0 chr9 11923683 11923986 -105938641 + AluSx SINE Alu 1 304 -8 2056 126 102 42 chr9 11923986 11924348 -105938279 - MSTA LTR MaLR -37 391 1 7972 218 42 10 chr9 11924348 11926456 -105936171 - L1MB1 LINE L1 -900 5246 3073 3929 165 17 4 chr9 11926540 11927262 -105935365 - L1MA3 LINE L1 -212 6093 5363 2917 171 6 4 chr9 11927262 11927759 -105934868 + Tigger1 DNA MER2_type 1921 2418 0 21 57 0 0 chr9 11927863 11927898 -105934729 + AT_rich Low_complexity Low_complexity 1 35 0 2210 224 67 39 chr9 11928111 11928800 -105933827 - L1MC3 LINE L1 -1454 6331 5624 754 209 175 7 chr9 11928805 11929122 -105933505 - L1MC3 LINE L1 -743 5403 5084 3613 156 95 19 chr9 11929268 11930036 -105932591 + LTR1B LTR ERV1 1 826 0 1563 197 8 64 chr9 11930040 11930416 -105932211 + MLT1B LTR MaLR 4 358 -32 1564 206 20 23 chr9 11930677 11931021 -105931606 + MER2 DNA MER2_type 1 343 -1 453 36 0 0 chr9 11931705 11931760 -105930867 + (TG)n Simple_repeat Simple_repeat 2 56 0 2017 130 7 0 chr9 11932219 11932512 -105930115 - AluSg SINE Alu -15 295 1 344 209 40 54 chr9 11933900 11934048 -105928579 - L1ME4a LINE L1 -3 6398 6253 235 306 65 16 chr9 11934079 11934203 -105928424 - MIR SINE MIR -17 245 116 398 163 0 12 chr9 11934423 11934503 -105928124 + CT-rich Low_complexity Low_complexity 2 80 0 646 179 22 37 chr9 11934503 11934637 -105927990 - FLAM_C SINE Alu -1 132 1 2063 137 0 0 chr9 11935307 11935607 -105927020 - AluSx SINE Alu -12 300 1 181 204 111 0 chr9 11935747 11935801 -105926826 - MER5C DNA MER1_type -1 323 264 33 0 0 0 chr9 11936065 11936098 -105926529 + AT_rich Low_complexity Low_complexity 1 33 0 257 172 30 10 chr9 11936659 11936758 -105925869 + (TA)n Simple_repeat Simple_repeat 1 101 0 26 64 0 0 chr9 11936834 11936881 -105925746 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 11938670 11938702 -105923925 + AT_rich Low_complexity Low_complexity 1 32 0 182 114 0 29 chr9 11939560 11939595 -105923032 + (CA)n Simple_repeat Simple_repeat 2 35 0 198 234 16 78 chr9 11940927 11940991 -105921636 + L2 LINE L2 3213 3272 0 201 178 0 0 chr9 11941649 11941694 -105920933 + (TA)n Simple_repeat Simple_repeat 1 45 0 472 264 0 8 chr9 11942463 11942588 -105920039 - L1MA10 LINE L1 -9 6325 6202 254 268 0 0 chr9 11942608 11942664 -105919963 - MER45 DNA AcHobo 0 1581 1526 * 1013 272 53 100 chr9 11942660 11943322 -105919305 - MER45C DNA AcHobo -322 631 1 298 67 44 0 chr9 11943346 11943391 -105919236 + U2 snRNA snRNA 1 47 -141 4517 259 91 65 chr9 11943392 11943692 -105918935 - L1MCa LINE L1 -178 6268 5977 189 0 0 0 chr9 11943692 11943713 -105918914 + (TA)n Simple_repeat Simple_repeat 1 21 0 4517 259 91 65 chr9 11943713 11943822 -105918805 - L1MCa LINE L1 -469 5977 5872 1109 37 0 0 chr9 11943822 11943957 -105918670 - L1PA3 LINE L1 0 6155 6021 4517 259 91 65 chr9 11943957 11945323 -105917304 - L1MCa LINE L1 -574 5872 4544 180 0 0 0 chr9 11945323 11945343 -105917284 + (TTA)n Simple_repeat Simple_repeat 2 21 0 4517 259 91 65 chr9 11945343 11946472 -105916155 - L1MCa LINE L1 -1902 4544 3446 879 103 0 0 chr9 11946472 11946588 -105916039 - AluJb SINE Alu -176 136 21 4517 259 91 65 chr9 11946588 11947962 -105914665 - L1MCa LINE L1 -3000 3446 1611 1999 139 16 0 chr9 11947962 11948279 -105914348 - L1PA15 LINE L1 -17 6148 5827 4517 259 91 65 chr9 11948279 11948353 -105914274 - L1MCa LINE L1 -4835 1611 1540 1942 164 42 14 chr9 11948358 11948748 -105913879 - MLT2A2 LTR ERVL -149 304 1 2268 164 26 55 chr9 11948749 11949200 -105913427 + L1MA9 LINE L1 3720 4157 -1989 2070 134 3 0 chr9 11949200 11949505 -105913122 + AluSx SINE Alu 1 306 -6 2268 164 26 55 chr9 11949505 11949546 -105913081 + L1MA9 LINE L1 4157 4198 -1948 931 144 32 32 chr9 11949570 11949757 -105912870 + L1MA9 LINE L1 5795 5981 -331 258 312 55 0 chr9 11950287 11950396 -105912231 + MER104 DNA Tc2 41 155 -25 22 0 0 0 chr9 11950403 11950425 -105912202 + AT_rich Low_complexity Low_complexity 1 22 0 3107 143 51 11 chr9 11950889 11951457 -105911170 - Tigger3(Golem) DNA MER2_type -48 2981 2391 520 250 0 0 chr9 11951467 11951571 -105911056 - Tigger3(Golem) DNA MER2_type -2925 104 1 292 289 99 8 chr9 11951571 11951692 -105910935 + Charlie1 DNA MER1_type 1793 1924 -837 23 54 0 0 chr9 11952303 11952340 -105910287 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr9 11952395 11952432 -105910195 + AT_rich Low_complexity Low_complexity 1 37 0 208 385 9 0 chr9 11952997 11953106 -105909521 + CT-rich Low_complexity Low_complexity 1 110 0 269 278 41 30 chr9 11955301 11955470 -105907157 + L1MC/D LINE L1 5712 5882 -1926 234 288 0 0 chr9 11956139 11956198 -105906429 - MLT1J2 LTR MaLR -299 151 93 237 119 0 0 chr9 11956208 11956250 -105906377 + (TG)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr9 11956450 11956474 -105906153 + AT_rich Low_complexity Low_complexity 1 24 0 219 346 0 0 chr9 11957538 11957616 -105905011 + MIR SINE MIR 159 236 -26 1247 215 29 0 chr9 11958356 11958447 -105904180 + AluJo SINE Alu 36 123 -189 410 0 0 20 chr9 11958447 11958498 -105904129 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 1247 215 29 0 chr9 11958498 11958652 -105903975 + AluJo SINE Alu 123 288 -24 2052 250 27 22 chr9 11959949 11960844 -105901783 + LTR27 LTR ERV1 1 950 -70 332 206 0 14 chr9 11960896 11960969 -105901658 + LTR28 LTR ERV1 949 1020 0 1167 228 44 35 chr9 11961308 11961754 -105900873 - LTR56 LTR ERV1 0 437 12 1670 214 114 72 chr9 11961873 11961997 -105900630 - L1ME2 LINE L1 -9 6155 6038 3779 132 8 37 chr9 11961997 11962651 -105899976 + MER41B LTR ERV1 1 635 0 1670 214 114 72 chr9 11962651 11963218 -105899409 - L1ME2 LINE L1 -126 6038 5435 192 307 47 39 chr9 11963461 11963588 -105899039 - L2 LINE L2 -916 2398 2271 290 143 76 162 chr9 11964075 11964132 -105898495 + MIR SINE MIR 156 202 -60 2128 112 0 3 chr9 11964132 11964435 -105898192 + AluSx SINE Alu 3 304 -8 290 143 76 162 chr9 11964435 11964482 -105898145 + MIR SINE MIR 202 251 -11 360 299 246 9 chr9 11964678 11964889 -105897738 - MIR SINE MIR 0 262 2 38 61 0 0 chr9 11965742 11965808 -105896819 + AT_rich Low_complexity Low_complexity 1 66 0 256 134 60 0 chr9 11966012 11966079 -105896548 + (TA)n Simple_repeat Simple_repeat 1 71 0 518 0 16 0 chr9 11966079 11966141 -105896486 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 1575 154 113 0 chr9 11966283 11966576 -105896051 + MER44D DNA MER2_type 14 609 0 993 263 146 38 chr9 11966634 11967140 -105895487 + MLT1E1 LTR MaLR 90 650 -4 212 0 36 0 chr9 11968753 11968781 -105893846 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 36 23 0 0 chr9 11970187 11970230 -105892397 + AT_rich Low_complexity Low_complexity 1 43 0 1524 175 7 59 chr9 11970248 11970551 -105892076 - AluJb SINE Alu -23 289 3 226 321 87 98 chr9 11970920 11971288 -105891339 - L2 LINE L2 0 3313 2950 1467 162 68 39 chr9 11971346 11971655 -105890972 - MER44D DNA MER2_type 0 609 22 393 291 82 41 chr9 11972902 11973117 -105889510 - L1M4 LINE L1 -1521 4625 4391 1571 183 3 30 chr9 11973117 11973412 -105889215 + AluJb SINE Alu 1 287 -25 393 291 82 41 chr9 11973412 11973512 -105889115 - L1M4 LINE L1 -1755 4391 4297 3337 243 43 50 chr9 11973570 11974695 -105887932 - L1MC4 LINE L1 -257 7785 6669 416 245 129 68 chr9 11975102 11975824 -105886803 - L1MC4 LINE L1 -1216 6592 5901 6693 229 36 19 chr9 11975826 11977627 -105885000 - Cheshire DNA MER1_type -1 2419 589 1600 204 36 40 chr9 11977627 11978073 -105884554 + L1M4 LINE L1 5290 5733 -451 852 341 66 41 chr9 11978081 11978690 -105883937 + ERVL LTR ERVL 2005 2628 -3136 2331 191 107 31 chr9 11978690 11979298 -105883329 + LTR28 LTR ERV1 1 1313 -395 539 316 73 89 chr9 11979618 11980145 -105882482 + ERVL LTR ERVL 2826 3337 -2427 624 198 32 0 chr9 11980145 11980271 -105882356 + L1PA16 LINE L1 6023 6152 -14 539 316 73 89 chr9 11980271 11980578 -105882049 + ERVL LTR ERVL 3337 3647 -2117 886 201 45 76 chr9 11981016 11981280 -105881347 + L1MA9 LINE L1 5727 5982 -330 1656 147 40 0 chr9 11981297 11981548 -105881079 - Charlie3 DNA MER1_type -2449 261 1 1456 221 135 29 chr9 11981683 11982136 -105880491 + MLT1D LTR MaLR 1 501 -4 2604 215 21 36 chr9 11982143 11982804 -105879823 + L1MC3 LINE L1 7126 7776 -9 321 26 0 0 chr9 11982967 11983005 -105879622 + (CA)n Simple_repeat Simple_repeat 1 38 0 938 265 118 42 chr9 11983248 11983655 -105878972 - LTR38 LTR ERV1 -32 524 87 533 202 0 18 chr9 11984622 11984736 -105877891 + MER104 DNA Tc2 5 116 -64 906 61 0 30 chr9 11984736 11984867 -105877760 - SVA Other Other 0 1386 1260 25 31 0 0 chr9 11984872 11984904 -105877723 + AT_rich Low_complexity Low_complexity 1 32 0 183 304 72 36 chr9 11985001 11985139 -105877488 + MIR SINE MIR 120 262 0 213 39 0 0 chr9 11985309 11985335 -105877292 + (T)n Simple_repeat Simple_repeat 1 26 0 41 93 0 0 chr9 11985793 11985911 -105876716 + AT_rich Low_complexity Low_complexity 1 118 0 1680 66 0 9 chr9 11987905 11988132 -105874495 + L1PA7 LINE L1 5927 6151 -3 2451 212 49 11 chr9 11991669 11992282 -105870345 - L1MD3 LINE L1 -10 7985 7350 225 313 134 0 chr9 11992359 11992471 -105870156 - L1MEc LINE L1 -5076 1320 1194 23 92 0 0 chr9 11992503 11992568 -105870059 + AT_rich Low_complexity Low_complexity 1 65 0 1134 312 124 48 chr9 11992579 11993602 -105869025 - L1MEc LINE L1 -5257 1139 39 2447 272 45 51 chr9 11993800 11994094 -105868533 + L1M4 LINE L1 2739 3033 -3113 917 255 41 52 chr9 11994094 11994463 -105868164 - MLT1A1 LTR MaLR 0 365 1 2447 272 45 51 chr9 11994463 11995742 -105866885 + L1M4 LINE L1 3033 4303 -1843 792 270 27 31 chr9 11995753 11996235 -105866392 + L1M4 LINE L1 4222 4701 -1445 * 11004 236 12 64 chr9 11996230 11998877 -105863750 + L1 LINE L1 12 2519 -5046 3959 161 14 56 chr9 11998866 11999101 -105863526 - L1PA16 LINE L1 -20 6146 5903 * 2139 125 3 0 chr9 11999101 11999406 -105863221 - AluSx SINE Alu -5 307 2 3959 161 14 56 chr9 11999406 11999961 -105862666 - L1PA16 LINE L1 -263 5903 5389 * 4151 223 36 4 chr9 11999958 12000939 -105861688 + L1 LINE L1 4627 5638 -1927 1449 169 58 14 chr9 12000942 12001266 -105861361 - MER61C LTR ERV1 -2 431 1 24639 127 31 36 chr9 12001266 12003544 -105859083 - MER61C-int LTR ERV1 -1 5216 2927 270 0 0 0 chr9 12003544 12003574 -105859053 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2193 97 0 10 chr9 12003576 12003866 -105858761 - AluSp SINE Alu -26 287 1 24639 127 31 36 chr9 12003866 12004582 -105858045 - MER61C-int LTR ERV1 -2291 2926 2208 2285 72 0 0 chr9 12004582 12004872 -105857755 + AluY SINE Alu 11 300 -11 24639 127 31 36 chr9 12004872 12006331 -105856296 - MER61C-int LTR ERV1 -3009 2208 666 1435 254 28 36 chr9 12006329 12006719 -105855908 - MER61C-int LTR ERV1 -4829 388 2 * 1638 184 13 16 chr9 12006719 12007061 -105855566 - MER61C LTR ERV1 0 434 1 2447 187 22 9 chr9 12007061 12007613 -105855014 + L1 LINE L1 5636 6194 -1371 2553 108 6 0 chr9 12007615 12007967 -105854660 + THE1A LTR MaLR 2 355 0 11075 112 10 2 chr9 12007967 12009536 -105853091 + THE1A-int LTR MaLR 1 1580 0 408 114 171 0 chr9 12009536 12009606 -105853021 + THE1A LTR MaLR 1 82 -273 1075 179 12 64 chr9 12009610 12009861 -105852766 + MLT1B LTR MaLR 125 362 -28 273 57 0 0 chr9 12009863 12009898 -105852729 + (T)n Simple_repeat Simple_repeat 1 35 0 336 121 52 0 chr9 12009946 12010004 -105852623 + MER61D LTR ERV1 441 501 0 1272 144 43 0 chr9 12010029 12010237 -105852390 - MER30 DNA MER1_type 0 230 14 2222 118 0 0 chr9 12010258 12010564 -105852063 - AluSg SINE Alu -4 306 1 1801 256 81 18 chr9 12010571 12011450 -105851177 - L1M4c LINE L1 -4180 2466 1443 449 279 25 0 chr9 12011517 12011639 -105850988 - L1M4c LINE L1 -5593 949 825 13160 245 61 22 chr9 12012328 12012898 -105849729 + L1PA15 LINE L1 1 547 -6269 2169 80 14 3 chr9 12012898 12013186 -105849441 - AluSc SINE Alu -18 291 1 13160 245 61 22 chr9 12013186 12018974 -105843653 + L1PA15 LINE L1 547 6700 -116 17512 42 1 5 chr9 12019150 12021351 -105841276 - L1P LINE L1 -963 5183 2992 327 385 21 17 chr9 12021686 12021920 -105840707 - L2 LINE L2 -853 2461 2227 293 303 85 66 chr9 12022255 12022466 -105840161 + MLT1J LTR MaLR 223 437 -74 188 343 28 56 chr9 12022666 12022774 -105839853 - L2 LINE L2 -19 3253 3149 222 358 138 22 chr9 12023059 12023414 -105839213 + L2 LINE L2 1891 2286 -1028 25 31 0 0 chr9 12025269 12025301 -105837326 + AT_rich Low_complexity Low_complexity 1 32 0 704 175 0 111 chr9 12025308 12025479 -105837148 - FRAM SINE Alu -14 152 1 1187 205 5 0 chr9 12025528 12025738 -105836889 - AluJo SINE Alu -101 211 1 1545 179 0 30 chr9 12027778 12028069 -105834558 + AluJb SINE Alu 23 305 0 739 293 150 26 chr9 12028164 12028591 -105834036 + MLT1H LTR MaLR 55 534 -15 362 39 19 0 chr9 12028608 12028660 -105833967 + (TG)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr9 12028767 12028790 -105833837 + AT_rich Low_complexity Low_complexity 1 23 0 34 55 0 0 chr9 12029844 12029899 -105832728 + AT_rich Low_complexity Low_complexity 1 55 0 186 306 74 0 chr9 12029945 12030053 -105832574 - MIR SINE MIR -50 212 97 235 222 56 0 chr9 12030726 12030780 -105831847 - L2 LINE L2 0 3313 3257 1794 158 50 7 chr9 12031070 12031244 -105831383 - AluSx SINE Alu -2 310 116 348 43 0 0 chr9 12031244 12031290 -105831337 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1794 158 50 7 chr9 12031290 12031412 -105831215 - AluSx SINE Alu -196 116 1 1104 159 56 0 chr9 12031455 12031650 -105830977 - MER61E LTR ERV1 -22 547 342 250 217 14 43 chr9 12031660 12031729 -105830898 - MER61E LTR ERV1 -404 165 99 * 499 250 23 15 chr9 12031719 12031851 -105830776 - LTR25 LTR ERV1 -414 380 248 295 203 8 136 chr9 12031838 12031956 -105830671 - MER61E LTR ERV1 -465 104 2 * 3060 230 64 39 chr9 12031971 12032939 -105829688 - MER61E-int LTR ERV1 -7 6989 5998 5467 180 29 8 chr9 12032944 12033556 -105829071 + L1MA3 LINE L1 4823 5421 -884 2862 156 37 89 chr9 12033556 12034285 -105828342 - LTR8 LTR ERV1 0 691 1 5467 180 29 8 chr9 12034285 12035123 -105827504 + L1MA3 LINE L1 5421 6305 0 1290 256 95 72 chr9 12035171 12035756 -105826871 + L1ME2 LINE L1 4713 5283 -881 216 0 0 0 chr9 12035756 12035780 -105826847 + (TG)n Simple_repeat Simple_repeat 2 25 0 1290 256 95 72 chr9 12035780 12036607 -105826020 + L1ME2 LINE L1 5283 6162 -2 5303 253 27 21 chr9 12036811 12038256 -105824371 + LTR25-int LTR ERV1 296 1749 -5247 1795 273 15 35 chr9 12038287 12038830 -105823797 + LTR25-int LTR ERV1 2146 2677 -6242 4796 203 5 0 chr9 12038858 12039697 -105822930 + LTR25-int LTR ERV1 3917 4759 -2332 582 222 24 77 chr9 12039700 12039948 -105822679 + L1M4 LINE L1 3262 3496 -2650 1583 163 43 29 chr9 12039948 12040298 -105822329 + L1MA7 LINE L1 5936 6290 -1 216 0 0 0 chr9 12040444 12040468 -105822159 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 586 256 123 10 chr9 12040470 12040673 -105821954 + L1M4 LINE L1 3502 3727 -2419 1470 207 38 90 chr9 12040681 12041027 -105821600 + L1M4 LINE L1 4504 4816 -1330 1806 169 4 4 chr9 12041027 12041305 -105821322 + AluJb SINE Alu 3 280 -32 1470 207 38 90 chr9 12041305 12041479 -105821148 + L1M4 LINE L1 4816 4997 -1149 1383 178 62 38 chr9 12041489 12041583 -105821044 - MER44D DNA MER2_type -1883 608 518 303 93 0 0 chr9 12041583 12041626 -105821001 + (TG)n Simple_repeat Simple_repeat 2 44 0 1383 178 62 38 chr9 12041626 12041851 -105820776 - MER44D DNA MER2_type -1973 518 11 444 237 13 32 chr9 12041865 12042021 -105820606 + L1M4 LINE L1 5008 5160 -986 345 286 0 0 chr9 12044101 12044199 -105818428 - L1M4 LINE L1 -1432 4714 4617 2207 216 13 11 chr9 12044242 12044771 -105817856 - L1MB3 LINE L1 -2 6181 5652 5588 112 10 19 chr9 12044773 12045638 -105816989 - L1PA10 LINE L1 -4 6164 5307 1231 257 117 8 chr9 12045639 12046207 -105816420 - L1MB3 LINE L1 -745 5401 4784 2403 167 76 25 chr9 12046207 12046691 -105815936 + LTR22 LTR ERVK 1 509 0 3368 131 16 0 chr9 12046691 12047194 -105815433 + HERVK22 LTR ERVK 1 511 -6326 1400 203 0 4 chr9 12097332 12097573 -105765054 + L1P3 LINE L1 10 249 -6212 2150 111 3 35 chr9 12097737 12098052 -105764575 - AluSx SINE Alu -7 305 1 2251 112 3 0 chr9 12098128 12098433 -105764194 - AluSx SINE Alu -6 306 1 437 181 0 0 chr9 12098764 12098836 -105763791 - FLAM_A SINE Alu -18 124 53 2296 67 0 0 chr9 12098939 12099259 -105763368 + AluY SINE Alu 1 320 0 1299 105 0 28 chr9 12099259 12099440 -105763187 + AluSg/x SINE Alu 132 307 -5 2371 85 3 0 chr9 12100605 12100899 -105761728 - AluSp SINE Alu -16 297 3 2416 94 13 0 chr9 12101075 12101383 -105761244 - AluSx SINE Alu 0 312 1 1567 118 0 5 chr9 12101662 12101882 -105760745 - AluSg/x SINE Alu -2 308 90 208 139 0 0 chr9 12103747 12103783 -105758844 + (TAAAAA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr9 12104450 12104472 -105758155 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr9 12105459 12105488 -105757139 + AT_rich Low_complexity Low_complexity 1 29 0 285 307 86 28 chr9 12105506 12105796 -105756831 - L1MC/D LINE L1 -1929 5879 5573 42 0 0 0 chr9 12106082 12106124 -105756503 + AT_rich Low_complexity Low_complexity 1 42 0 722 332 92 14 chr9 12106206 12106920 -105755707 + L1M4 LINE L1 3840 4609 -1537 285 343 62 48 chr9 12107040 12107349 -105755278 + L1MEc LINE L1 92 404 -5992 204 135 0 0 chr9 12107441 12107478 -105755149 + (CCA)n Simple_repeat Simple_repeat 2 38 0 254 322 78 0 chr9 12107513 12107628 -105754999 + L1MEc LINE L1 499 622 -5774 29388 111 13 43 chr9 12108546 12114884 -105747743 - L1PA7 LINE L1 -5 6464 154 303 183 56 14 chr9 12114884 12114955 -105747672 - MER31A LTR ERV1 -332 153 80 29388 111 13 43 chr9 12114955 12115105 -105747522 - L1PA7 LINE L1 -6315 154 1 32 26 0 0 chr9 12115230 12115269 -105747358 + AT_rich Low_complexity Low_complexity 1 39 0 744 222 66 37 chr9 12115728 12115971 -105746656 - MER31A LTR ERV1 -235 250 1 664 249 51 30 chr9 12115972 12116001 -105746626 - MER31A-int LTR ERV1 -21 4915 4888 180 111 0 0 chr9 12116001 12116028 -105746599 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 664 249 51 30 chr9 12116028 12116235 -105746392 - MER31A-int LTR ERV1 -48 4888 4674 269 279 44 0 chr9 12118188 12118256 -105744371 - MER31A-int LTR ERV1 -4674 4245 4175 261 250 69 52 chr9 12118547 12118663 -105743964 - LTR57-int LTR ERVL -3196 2147 2030 24 32 0 0 chr9 12120252 12120283 -105742344 + AT_rich Low_complexity Low_complexity 1 31 0 760 207 89 43 chr9 12120500 12120702 -105741925 - MLT1D LTR MaLR 0 618 335 400 353 115 12 chr9 12121444 12121696 -105740931 + L2 LINE L2 2995 3272 0 278 244 89 49 chr9 12122251 12122374 -105740253 - MIR SINE MIR -115 147 20 22 35 0 0 chr9 12122526 12122555 -105740072 + AT_rich Low_complexity Low_complexity 1 29 0 1042 169 0 12 chr9 12122749 12122921 -105739706 + AluJo SINE Alu 1 170 -142 342 268 41 21 chr9 12123385 12123482 -105739145 - MIR3 SINE MIR -49 159 61 1820 216 36 78 chr9 12123668 12124246 -105738381 - MLT2B3 LTR ERVL 0 554 1 22 35 0 0 chr9 12124740 12124769 -105737858 + AT_rich Low_complexity Low_complexity 1 29 0 2516 127 63 97 chr9 12126387 12127013 -105735614 - MER4B LTR ERV1 0 766 1 530 193 18 18 chr9 12127052 12127166 -105735461 - FLAM_A SINE Alu -11 131 18 1646 162 51 51 chr9 12127186 12127343 -105735284 + MLT1B LTR MaLR 10 166 -224 1710 142 4 4 chr9 12127343 12127603 -105735024 + AluSq SINE Alu 39 298 -15 1646 162 51 51 chr9 12127603 12127796 -105734831 + MLT1B LTR MaLR 165 360 -30 1040 222 143 101 chr9 12127846 12128561 -105734066 + LTR1B LTR ERV1 82 826 0 2197 149 22 3 chr9 12128885 12129255 -105733372 + LTR8A LTR ERV1 1 377 -350 4220 121 49 49 chr9 12129256 12130010 -105732617 - LTR1 LTR ERV1 0 785 32 1201 195 47 58 chr9 12130023 12130367 -105732260 + LTR8A LTR ERV1 375 714 -13 2031 287 51 24 chr9 12130655 12130691 -105731936 + L1ME1 LINE L1 150 184 -6212 318 26 0 0 chr9 12130691 12130730 -105731897 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2031 287 51 24 chr9 12130730 12131518 -105731109 + L1ME1 LINE L1 184 996 -5400 313 250 81 48 chr9 12131522 12131646 -105730981 - L1MEc LINE L1 -5034 1350 1223 343 218 20 10 chr9 12131656 12131757 -105730870 - L1MEc LINE L1 -5227 1336 1235 258 250 118 80 chr9 12131874 12132390 -105730237 + L1ME1 LINE L1 2898 3433 -2782 951 253 152 62 chr9 12132605 12132790 -105729837 + L1M4 LINE L1 1 168 -6374 3550 179 25 15 chr9 12132790 12133510 -105729117 - LTR8A LTR ERV1 0 727 1 951 253 152 62 chr9 12133510 12133823 -105728804 + L1M4 LINE L1 168 544 -5998 331 248 104 24 chr9 12133830 12133955 -105728672 + MLT1B LTR MaLR 404 538 -4 247 279 185 71 chr9 12134073 12134327 -105728300 + L1ME1 LINE L1 5094 5376 -839 1044 277 66 7 chr9 12134359 12134781 -105727846 + L1ME1 LINE L1 5479 5925 -310 225 128 0 0 chr9 12135497 12135544 -105727083 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 719 185 31 15 chr9 12135762 12135892 -105726735 - FLAM_C SINE Alu -1 132 1 21 36 0 0 chr9 12135933 12135961 -105726666 + AT_rich Low_complexity Low_complexity 1 28 0 4351 197 25 48 chr9 12135967 12137226 -105725401 - L1MA10 LINE L1 -15 6319 5088 2202 211 40 29 chr9 12137223 12137852 -105724775 + L1MA10 LINE L1 4441 5076 -1070 * 2006 90 60 4 chr9 12138069 12138360 -105724267 + AluY SINE Alu 1 306 0 22 35 0 0 chr9 12138496 12138525 -105724102 + AT_rich Low_complexity Low_complexity 1 29 0 2328 138 11 3 chr9 12138584 12138945 -105723682 + THE1B LTR MaLR 1 364 0 10215 123 37 3 chr9 12138946 12140473 -105722154 + THE1B-int LTR MaLR 2 1580 0 1589 144 25 18 chr9 12140473 12140751 -105721876 + THE1B LTR MaLR 1 280 -84 1400 164 0 0 chr9 12140751 12140965 -105721662 + THE1-int LTR MaLR 938 1151 -429 305 414 55 0 chr9 12142129 12142274 -105720353 + L2 LINE L2 3112 3264 -8 369 93 0 0 chr9 12143271 12143325 -105719302 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1941 169 107 13 chr9 12143936 12144327 -105718300 + MSTA LTR MaLR 1 428 0 761 268 65 0 chr9 12146815 12147076 -105715551 - MER5C DNA MER1_type -43 281 4 1382 269 75 53 chr9 12148076 12149179 -105713448 + L1ME LINE L1 508 1611 -4469 577 308 40 9 chr9 12149359 12149583 -105713044 + LTR16A LTR ERVL 176 406 -44 311 353 43 27 chr9 12149589 12149889 -105712738 + L1ME LINE L1 2271 2575 -3505 1840 175 51 0 chr9 12149906 12150237 -105712390 - MER7A DNA MER2_type 0 346 1 370 188 0 62 chr9 12150237 12150323 -105712304 - L1MC4 LINE L1 -1347 6695 6614 364 265 0 31 chr9 12150242 12150340 -105712287 + L1MC4 LINE L1 6614 6708 -1334 * 402 304 12 70 chr9 12151332 12151503 -105711124 + MER5B DNA MER1_type 1 161 -17 389 258 52 79 chr9 12151781 12152072 -105710555 - L1ME3 LINE L1 -22 6140 5858 33 66 0 0 chr9 12152108 12152169 -105710458 + AT_rich Low_complexity Low_complexity 1 61 0 411 281 131 70 chr9 12152345 12152767 -105709860 + MLT1H LTR MaLR 114 549 -6 21 57 0 0 chr9 12152882 12152917 -105709710 + AT_rich Low_complexity Low_complexity 1 35 0 374 80 0 0 chr9 12153593 12153643 -105708984 + L1P LINE L1 5123 5172 -974 2330 252 10 0 chr9 12153652 12154248 -105708379 + L1 LINE L1 2253 2854 -3292 1263 309 74 24 chr9 12154251 12154875 -105707752 + MER110-int LTR ERV1 2254 2908 -1739 192 40 0 0 chr9 12155087 12155112 -105707515 + (T)n Simple_repeat Simple_repeat 1 25 0 313 313 47 47 chr9 12155125 12155318 -105707309 + MER110-int LTR ERV1 4410 4605 -42 2219 108 3 3 chr9 12155318 12155624 -105707003 + AluSq SINE Alu 1 306 -7 313 313 47 47 chr9 12155624 12155644 -105706983 + MER110-int LTR ERV1 4604 4623 -24 324 350 110 30 chr9 12155754 12156091 -105706536 + L1ME3 LINE L1 5526 5889 -273 326 368 72 13 chr9 12156195 12156347 -105706280 - L2 LINE L2 -239 3074 2914 194 338 76 25 chr9 12156542 12156699 -105705928 + L2 LINE L2 3149 3313 0 216 200 0 0 chr9 12156820 12156865 -105705762 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 198 407 82 21 chr9 12156883 12157126 -105705501 - L2 LINE L2 -89 3183 2926 41 36 0 0 chr9 12157486 12157541 -105705086 + AT_rich Low_complexity Low_complexity 1 55 0 4057 74 0 0 chr9 12158162 12158689 -105703938 - L1PA7 LINE L1 -3 6151 5625 579 360 20 65 chr9 12158824 12159319 -105703308 + L2 LINE L2 237 709 -2605 763 247 150 30 chr9 12159452 12159760 -105702867 - Charlie1a DNA MER1_type -1084 371 27 357 330 101 9 chr9 12160025 12160243 -105702384 + L3 LINE CR1 1155 1392 -185 25 0 0 0 chr9 12160606 12160631 -105701996 + AT_rich Low_complexity Low_complexity 1 25 0 29 67 0 0 chr9 12161508 12161553 -105701074 + AT_rich Low_complexity Low_complexity 1 45 0 369 225 13 40 chr9 12161577 12161728 -105700899 + (TATAA)n Simple_repeat Simple_repeat 2 148 0 56 67 0 0 chr9 12161833 12161938 -105700689 + AT_rich Low_complexity Low_complexity 1 105 0 536 294 74 69 chr9 12161970 12162190 -105700437 + L1MC4 LINE L1 6702 6926 -1116 1605 193 0 6 chr9 12162190 12162512 -105700115 + L1MA6 LINE L1 5981 6300 0 536 294 74 69 chr9 12162512 12162655 -105699972 + L1MC4 LINE L1 6926 7067 -975 314 314 33 19 chr9 12162890 12163100 -105699527 + L1MC4 LINE L1 7690 7902 -140 245 155 17 0 chr9 12163108 12163166 -105699461 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 268 266 51 25 chr9 12163428 12163507 -105699120 + L2 LINE L2 3228 3308 -5 186 393 9 9 chr9 12165265 12165372 -105697255 + L2 LINE L2 2376 2482 -832 1069 219 81 51 chr9 12165663 12165997 -105696630 + MER2 DNA MER2_type 1 344 0 25 0 0 0 chr9 12166234 12166259 -105696368 + AT_rich Low_complexity Low_complexity 1 25 0 2041 141 3 0 chr9 12167508 12167814 -105694813 + AluSp SINE Alu 1 307 -6 1498 212 68 0 chr9 12168463 12168803 -105693824 + MLT1A1 LTR MaLR 1 363 -2 22 0 0 0 chr9 12168953 12168975 -105693652 + AT_rich Low_complexity Low_complexity 1 22 0 8673 46 2 4 chr9 12169733 12171582 -105691045 + L1PA5 LINE L1 4305 6151 -3 188 207 138 0 chr9 12172313 12172371 -105690256 + L2 LINE L2 2686 2751 -563 719 353 74 30 chr9 12174387 12175184 -105687443 + ERVL LTR ERVL 1944 2747 -2249 7062 199 88 24 chr9 12175415 12176969 -105685658 + MER52A LTR ERV1 1 1755 0 3289 206 62 5 chr9 12177004 12177677 -105684950 - MER44D DNA MER2_type 0 605 22 222 37 0 0 chr9 12178349 12178376 -105684251 + (A)n Simple_repeat Simple_repeat 1 27 0 269 345 9 9 chr9 12178959 12179069 -105683558 + ERVL LTR ERVL 5216 5325 -439 207 0 0 0 chr9 12179141 12179164 -105683463 + (TG)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr9 12179165 12179195 -105683432 + AT_rich Low_complexity Low_complexity 1 30 0 9414 210 70 32 chr9 12179216 12182086 -105680541 - L1M LINE L1 -769 5377 2447 27 0 0 0 chr9 12182086 12182113 -105680514 + AT_rich Low_complexity Low_complexity 1 27 0 328 360 23 29 chr9 12182121 12182293 -105680334 - L1M3d LINE L1 -5509 382 212 2903 299 51 29 chr9 12182365 12184821 -105677806 - L1M1 LINE L1 -3873 2278 6 423 301 57 17 chr9 12184853 12185029 -105677598 - LTR33 LTR ERVL -10 511 329 1155 274 95 16 chr9 12185089 12185520 -105677107 + MLT1D LTR MaLR 39 503 -2 21 57 0 0 chr9 12187159 12187194 -105675433 + AT_rich Low_complexity Low_complexity 1 35 0 704 325 54 31 chr9 12187384 12187738 -105674889 + L2 LINE L2 2949 3310 -3 270 297 42 8 chr9 12188042 12188160 -105674467 - L2 LINE L2 -1449 1865 1744 284 62 0 21 chr9 12188558 12188606 -105674021 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 1006 128 12 0 chr9 12188620 12188792 -105673835 + CT-rich Low_complexity Low_complexity 3 176 0 2191 91 0 32 chr9 12188794 12189102 -105673525 - AluSc SINE Alu -10 299 2 25 0 0 0 chr9 12189504 12189529 -105673098 + AT_rich Low_complexity Low_complexity 1 25 0 2490 114 34 42 chr9 12189529 12190001 -105672626 - L1MA3 LINE L1 0 7724 7257 448 123 0 0 chr9 12190001 12190074 -105672553 - L1MA3 LINE L1 -914 6810 6738 5667 179 46 9 chr9 12190090 12191275 -105671352 - L1MA3 LINE L1 -1263 6302 5074 * 15103 175 32 25 chr9 12191271 12194093 -105668534 - L1MA3 LINE L1 -4715 2850 9 215 372 0 0 chr9 12194857 12194951 -105667676 + GA-rich Low_complexity Low_complexity 2 95 0 25 31 0 0 chr9 12195396 12195428 -105667199 + AT_rich Low_complexity Low_complexity 1 32 0 812 106 0 0 chr9 12196933 12197046 -105665581 - L1P LINE L1 -5442 704 592 11327 57 9 1 chr9 12197046 12199261 -105663366 + L1PA5 LINE L1 3932 6154 0 312 280 80 8 chr9 12199337 12199462 -105663165 - MLT1I LTR MaLR -267 142 9 325 360 52 28 chr9 12199932 12200182 -105662445 + L1ME4a LINE L1 5639 5894 -227 669 279 198 13 chr9 12200751 12201312 -105661315 - LTR50 LTR ERVL -42 753 50 21 36 0 0 chr9 12201472 12201500 -105661127 + AT_rich Low_complexity Low_complexity 1 28 0 369 250 0 0 chr9 12201567 12201651 -105660976 - MER94 DNA DNA -39 95 12 2757 186 47 29 chr9 12202551 12203163 -105659464 - L1MD1 LINE L1 -1 6241 5619 32 64 0 13 chr9 12203174 12203200 -105659427 + AT_rich Low_complexity Low_complexity 1 26 -51 252 0 0 0 chr9 12203200 12203228 -105659399 + (CA)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr9 12203227 12203247 -105659380 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 32 64 0 13 chr9 12203228 12203298 -105659329 + AT_rich Low_complexity Low_complexity 26 77 0 703 12 0 0 chr9 12203298 12203382 -105659245 - L1PA4 LINE L1 -3 6152 6069 275 130 19 0 chr9 12203393 12203447 -105659180 + (TA)n Simple_repeat Simple_repeat 1 55 0 360 77 0 0 chr9 12203517 12203569 -105659058 + (TG)n Simple_repeat Simple_repeat 2 53 0 28 29 0 0 chr9 12204281 12204316 -105658311 + AT_rich Low_complexity Low_complexity 1 35 0 231 114 0 0 chr9 12207191 12207226 -105655401 + (TG)n Simple_repeat Simple_repeat 2 36 0 1323 239 28 12 chr9 12207394 12207720 -105654907 - MLT1A1 LTR MaLR -34 331 1 722 197 56 17 chr9 12207728 12207906 -105654721 - L1MD1 LINE L1 -136 6106 5922 4940 255 56 30 chr9 12207920 12209952 -105652675 + L1M4 LINE L1 14 2096 -4550 1933 336 64 15 chr9 12210180 12210972 -105651655 + L1M4b LINE L1 260 1090 -5769 5867 117 9 3 chr9 12211021 12211947 -105650680 - L1PB1 LINE L1 0 6151 5221 1402 261 59 52 chr9 12211948 12213179 -105649448 + L1M4b LINE L1 1185 2418 -4541 4372 28 0 0 chr9 12213517 12214045 -105648582 - L1P LINE L1 -772 5374 4847 822 58 0 0 chr9 12214045 12214141 -105648486 + L1PA3 LINE L1 6050 6152 -3 699 287 37 12 chr9 12214165 12214754 -105647873 + L1M4b LINE L1 2775 3478 -3479 * 1233 252 40 86 chr9 12214750 12215504 -105647123 + L1M4b LINE L1 3831 4549 -2408 1107 261 40 8 chr9 12215511 12215890 -105646737 + L1M4b LINE L1 5074 5464 -1493 * 2112 226 8 8 chr9 12215878 12216410 -105646217 + L1M4b LINE L1 5683 6214 -743 2146 101 23 4 chr9 12216416 12216925 -105645702 + L1PB1 LINE L1 5470 6151 0 2393 228 33 81 chr9 12216938 12217497 -105645130 + L1MB7 LINE L1 4646 5230 -954 2337 82 0 16 chr9 12217497 12217813 -105644814 + AluY SINE Alu 1 311 0 2393 228 33 81 chr9 12217813 12217926 -105644701 + L1MB7 LINE L1 5230 5347 -837 210 37 0 0 chr9 12217926 12217953 -105644674 + (CA)n Simple_repeat Simple_repeat 2 28 0 2393 228 33 81 chr9 12217953 12218895 -105643732 + L1MB7 LINE L1 5347 6184 0 545 265 107 28 chr9 12218887 12219279 -105643348 + L1M4c LINE L1 1921 2343 -4041 * 24 53 0 0 chr9 12219474 12219512 -105643115 + AT_rich Low_complexity Low_complexity 1 38 0 875 213 88 43 chr9 12219597 12219902 -105642725 - L1MC3 LINE L1 -1377 6802 6484 254 177 32 0 chr9 12219910 12219972 -105642655 - HSMAR2 DNA Mariner 0 1302 1239 4154 263 43 10 chr9 12219973 12222122 -105640505 - L1MC3 LINE L1 -743 5797 4135 1160 294 47 18 chr9 12222171 12222552 -105640075 - L1MC3 LINE L1 -5538 1002 611 225 65 0 0 chr9 12222634 12222665 -105639962 + (TG)n Simple_repeat Simple_repeat 2 32 0 304 163 125 12 chr9 12222685 12222765 -105639862 - L1MC3 LINE L1 -6175 365 277 225 108 0 0 chr9 12223573 12223610 -105639017 + (CA)n Simple_repeat Simple_repeat 2 38 0 265 188 38 25 chr9 12224061 12224141 -105638486 + (TTTA)n Simple_repeat Simple_repeat 2 82 0 207 0 0 0 chr9 12225572 12225595 -105637032 + (A)n Simple_repeat Simple_repeat 1 23 0 2371 72 3 28 chr9 12225738 12226057 -105636570 - AluY SINE Alu 0 311 1 219 69 0 0 chr9 12226326 12226355 -105636272 + (CA)n Simple_repeat Simple_repeat 2 30 0 2361 57 0 0 chr9 12227307 12227639 -105634988 + AluY SINE Alu 1 332 0 433 250 133 8 chr9 12227656 12228021 -105634606 + L1MC4 LINE L1 6188 6560 -1248 279 0 0 0 chr9 12228021 12228052 -105634575 + (CA)n Simple_repeat Simple_repeat 2 32 0 433 250 133 8 chr9 12228052 12228096 -105634531 + L1MC4 LINE L1 6560 6597 -1211 899 223 83 9 chr9 12228108 12228578 -105634049 + MER34 LTR ERV1 13 542 0 288 53 0 0 chr9 12228578 12228616 -105634011 + (TG)n Simple_repeat Simple_repeat 2 39 0 254 284 40 0 chr9 12228625 12228699 -105633928 + L1MC4 LINE L1 6743 6819 -1223 * 3912 209 13 23 chr9 12228684 12229674 -105632953 + L1 LINE L1 4154 5133 -1013 3119 251 48 31 chr9 12229669 12230748 -105631879 + L1MC4a LINE L1 6704 7800 -8 * 441 0 0 0 chr9 12231036 12231085 -105631542 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 307 264 203 56 chr9 12231833 12231926 -105630701 + MIR SINE MIR 37 115 -147 252 0 0 0 chr9 12231926 12231954 -105630673 + (TAA)n Simple_repeat Simple_repeat 1 28 0 307 264 203 56 chr9 12231954 12232057 -105630570 + MIR SINE MIR 115 262 0 2294 100 0 0 chr9 12233481 12233781 -105628846 + AluSx SINE Alu 1 300 -12 180 0 0 0 chr9 12233889 12233909 -105628718 + (TG)n Simple_repeat Simple_repeat 2 21 0 231 217 22 0 chr9 12236937 12236983 -105625644 + CT-rich Low_complexity Low_complexity 5 51 0 8729 112 24 2 chr9 12237044 12238180 -105624447 - HSMAR1 DNA Mariner 0 1287 119 270 56 0 0 chr9 12238180 12238216 -105624411 + (CAA)n Simple_repeat Simple_repeat 2 37 0 8729 112 24 2 chr9 12238216 12238335 -105624292 - HSMAR1 DNA Mariner -1168 119 4 234 0 0 0 chr9 12239291 12239317 -105623310 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 810 196 76 73 chr9 12239484 12239759 -105622868 + MLT2D LTR ERVL 1 276 -138 188 103 51 0 chr9 12240002 12240041 -105622586 + CT-rich Low_complexity Low_complexity 3 43 0 2784 179 47 25 chr9 12241202 12241755 -105620872 - Tigger3b DNA MER2_type -666 565 1 1923 93 99 42 chr9 12241821 12242109 -105620518 + MER4D LTR ERV1 1 312 -591 4513 124 27 33 chr9 12242109 12242892 -105619735 - MER4E LTR ERV1 0 779 2 1923 93 99 42 chr9 12242892 12242935 -105619692 + MER4D LTR ERV1 312 351 -552 336 167 31 21 chr9 12243112 12243208 -105619419 + CT-rich Low_complexity Low_complexity 4 100 0 269 255 110 7 chr9 12244104 12244249 -105618378 - MER97b DNA MER1_type? -194 859 700 223 214 56 22 chr9 12244945 12245034 -105617593 + (CCCTG)n Simple_repeat Simple_repeat 5 96 0 720 163 23 0 chr9 12245475 12245604 -105617023 - FLAM_C SINE Alu -1 132 1 467 222 71 0 chr9 12245678 12245804 -105616823 - MER97a DNA MER1_type? -196 698 564 511 294 117 0 chr9 12245858 12246055 -105616572 - MIR SINE MIR -30 232 13 24 0 0 0 chr9 12246753 12246777 -105615850 + AT_rich Low_complexity Low_complexity 1 24 0 850 161 67 0 chr9 12246921 12247114 -105615513 - L1MA8 LINE L1 -2 6289 6084 1720 151 28 16 chr9 12247560 12247877 -105614750 - L1MA8 LINE L1 -185 6106 5786 792 163 101 17 chr9 12247877 12248055 -105614572 - Tigger1 DNA MER2_type 0 2418 2226 21 0 0 0 chr9 12248063 12248084 -105614543 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 12248386 12248407 -105614220 + AT_rich Low_complexity Low_complexity 1 21 0 1962 110 3 43 chr9 12248891 12249190 -105613437 - AluSq SINE Alu -26 287 1 244 316 26 0 chr9 12249391 12249467 -105613160 + MIR3 SINE MIR 85 162 -46 881 322 75 37 chr9 12249814 12250215 -105612412 - LTR16A LTR ERVL -9 441 26 357 357 14 0 chr9 12250805 12250948 -105611679 - LTR16A LTR ERVL 0 450 306 1411 127 4 48 chr9 12251025 12251253 -105611374 - AluSg/x SINE Alu -20 292 75 27 0 0 0 chr9 12251609 12251636 -105610991 + AT_rich Low_complexity Low_complexity 1 27 0 324 312 48 24 chr9 12251955 12252080 -105610547 - MIR SINE MIR -115 147 20 1310 185 4 0 chr9 12252080 12252318 -105610309 + L1MA7 LINE L1 5681 5919 -372 1571 177 52 33 chr9 12252325 12252692 -105609935 + THE1C LTR MaLR 1 374 -1 8188 154 39 36 chr9 12252700 12254170 -105608457 + THE1C-int LTR MaLR 3 1476 -104 221 56 0 28 chr9 12254170 12254206 -105608421 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7365 29 1 1 chr9 12254206 12255786 -105606841 - L1PA3 LINE L1 -24 6131 4552 531 106 15 121 chr9 12255779 12255850 -105606777 + THE1C-int LTR MaLR 1463 1515 -65 * 1609 115 0 21 chr9 12255850 12256085 -105606542 - AluSg/x SINE Alu -4 308 79 531 106 15 121 chr9 12256085 12256145 -105606482 + THE1C-int LTR MaLR 1515 1580 0 1717 158 65 14 chr9 12256147 12256502 -105606125 + THE1C LTR MaLR 3 375 0 1575 193 40 0 chr9 12256502 12256854 -105605773 + L1MA7 LINE L1 5924 6289 -2 2163 124 0 0 chr9 12257004 12257302 -105605325 + AluSq SINE Alu 1 298 -15 2169 112 0 3 chr9 12258231 12258535 -105604092 + AluSg SINE Alu 5 307 -3 262 267 130 74 chr9 12259062 12259332 -105603295 - L1ME3 LINE L1 -150 6081 5797 266 237 96 59 chr9 12259648 12259783 -105602844 + MLT1H LTR MaLR 410 549 0 744 278 101 9 chr9 12259808 12260154 -105602473 - L1ME3 LINE L1 -470 5761 5384 14680 57 2 2 chr9 12260158 12262814 -105599813 - L1PA5 LINE L1 -13 6141 3486 2668 68 0 0 chr9 12262815 12263184 -105599443 + L1P LINE L1 3061 3429 -2717 * 21642 66 7 5 chr9 12263179 12266526 -105596101 - L1PA5 LINE L1 -322 5832 2479 1651 186 27 0 chr9 12266901 12267197 -105595430 - AluJb SINE Alu -8 304 1 1083 303 99 19 chr9 12267549 12268611 -105594016 - L1ME3 LINE L1 -1828 4387 3241 * 1797 289 69 47 chr9 12268608 12269997 -105592630 - L1ME3 LINE L1 -3950 2446 1027 1459 310 67 24 chr9 12270043 12270857 -105591770 - L1ME3 LINE L1 -5449 947 91 4759 43 2 0 chr9 12270857 12271439 -105591188 - L1PA5 LINE L1 -1 6153 5571 1459 310 67 24 chr9 12271439 12271499 -105591128 - L1ME3 LINE L1 -6305 91 35 830 348 81 3 chr9 12271850 12272209 -105590418 - L1MEc LINE L1 -5876 520 134 21 89 0 0 chr9 12272209 12272265 -105590362 + AT_rich Low_complexity Low_complexity 1 56 0 245 132 0 94 chr9 12272306 12272359 -105590268 - L1MEc LINE L1 -6294 102 55 369 291 163 26 chr9 12272382 12273182 -105589445 - L1MEc LINE L1 -3174 3041 2171 209 191 22 45 chr9 12273211 12273300 -105589327 + T-rich Low_complexity Low_complexity 6 92 0 197 383 8 17 chr9 12274182 12274302 -105588325 - L2 LINE L2 -925 2389 2271 2081 107 14 0 chr9 12274738 12275027 -105587600 - AluSc SINE Alu -16 293 1 30 0 0 0 chr9 12277194 12277224 -105585403 + AT_rich Low_complexity Low_complexity 1 30 0 266 241 46 0 chr9 12277732 12277819 -105584808 - MER58 DNA MER1_type -224 117 27 216 0 0 0 chr9 12280006 12280030 -105582597 + (TG)n Simple_repeat Simple_repeat 2 25 0 3106 188 29 9 chr9 12280792 12281448 -105581179 - L1MB1 LINE L1 -9 6159 5491 31 88 0 0 chr9 12281954 12282034 -105580593 + AT_rich Low_complexity Low_complexity 1 80 0 793 289 46 18 chr9 12283474 12283754 -105578873 - MLT1G LTR MaLR 0 590 303 185 255 43 0 chr9 12284419 12284466 -105578161 - L2 LINE L2 -5 3267 3219 183 42 0 0 chr9 12284531 12284555 -105578072 + (CA)n Simple_repeat Simple_repeat 1 24 0 349 191 22 38 chr9 12284695 12284878 -105577749 + (TA)n Simple_repeat Simple_repeat 1 180 0 1827 170 3 13 chr9 12284955 12285266 -105577361 + AluSx SINE Alu 3 310 -2 2849 268 55 51 chr9 12285637 12285866 -105576761 + L1M4 LINE L1 33 259 -6283 2101 125 0 13 chr9 12285866 12286178 -105576449 + AluSq SINE Alu 1 308 -5 2849 268 55 51 chr9 12286178 12287092 -105575535 + L1M4 LINE L1 259 1181 -5361 303 192 20 50 chr9 12287093 12287192 -105575435 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 263 165 35 41 chr9 12287206 12287376 -105575251 + (TA)n Simple_repeat Simple_repeat 1 169 0 10962 234 35 16 chr9 12287453 12291369 -105571258 - L1M2 LINE L1 -522 7209 3213 22 66 0 40 chr9 12291374 12291450 -105571177 + AT_rich Low_complexity Low_complexity 1 73 0 28373 40 2 0 chr9 12291456 12295765 -105566862 - L1PA3 LINE L1 -11 6144 1827 1220 257 18 33 chr9 12295761 12296241 -105566386 - L1M2 LINE L1 -4166 3400 2728 * 10300 228 53 49 chr9 12296255 12296822 -105565805 - L1MA6 LINE L1 0 7719 7156 198 0 0 0 chr9 12296822 12296844 -105565783 + (TA)n Simple_repeat Simple_repeat 1 22 0 10300 228 53 49 chr9 12296844 12298993 -105563634 - L1MA6 LINE L1 -563 7156 5019 1539 202 121 5 chr9 12298993 12299374 -105563253 + MSTB LTR MaLR 1 425 -1 10300 228 53 49 chr9 12299374 12301893 -105560734 - L1MA6 LINE L1 -2700 5019 2527 243 253 13 27 chr9 12302243 12302318 -105560309 - MIR SINE MIR -110 152 79 261 320 40 58 chr9 12303778 12303940 -105558687 + MIR SINE MIR 37 188 -67 1935 67 0 0 chr9 12304564 12304802 -105557825 + AluY SINE Alu 1 238 -73 2120 217 50 9 chr9 12304802 12305439 -105557188 - L1 LINE L1 -2606 3540 2140 1297 251 109 7 chr9 12305518 12305921 -105556706 + L1 LINE L1 2420 2863 -3283 251 29 59 0 chr9 12305927 12305961 -105556666 + L1PA3 LINE L1 4206 4241 -1905 6772 113 18 10 chr9 12305964 12307613 -105555014 + L1PA3 LINE L1 4517 6181 0 755 198 78 5 chr9 12307613 12307805 -105554822 + L1MC4 LINE L1 7697 7902 -140 1260 96 0 0 chr9 12307822 12307988 -105554639 + AluSq SINE Alu 40 205 -108 29 47 0 0 chr9 12308009 12308052 -105554575 + AT_rich Low_complexity Low_complexity 1 43 0 277 240 0 0 chr9 12308052 12308102 -105554525 + L2 LINE L2 3256 3305 -8 345 239 19 31 chr9 12308365 12308524 -105554103 + (TA)n Simple_repeat Simple_repeat 2 158 0 21 0 0 0 chr9 12309792 12309813 -105552814 + AT_rich Low_complexity Low_complexity 1 21 0 334 351 154 10 chr9 12309994 12310202 -105552425 - MIR SINE MIR -11 251 14 192 333 56 42 chr9 12310741 12310885 -105551742 + MIR SINE MIR 1 146 -116 241 356 48 14 chr9 12311282 12311428 -105551199 + MIR SINE MIR 20 170 -92 242 217 17 0 chr9 12311468 12311528 -105551099 + (CAT)n Simple_repeat Simple_repeat 2 62 0 22 0 0 0 chr9 12311930 12311952 -105550675 + AT_rich Low_complexity Low_complexity 1 22 0 396 206 28 37 chr9 12313392 12313499 -105549128 - FLAM_A SINE Alu -8 125 20 1491 219 0 0 chr9 12313890 12314169 -105548458 + AluJb SINE Alu 2 280 -32 784 117 7 7 chr9 12314171 12314308 -105548319 + (GGAA)n Simple_repeat Simple_repeat 2 138 0 629 191 30 6 chr9 12314347 12314515 -105548112 + GA-rich Low_complexity Low_complexity 1 172 0 1245 238 83 17 chr9 12317112 12317461 -105545166 + L1MC2 LINE L1 5952 6323 -21 328 286 24 18 chr9 12317471 12317639 -105544988 - Charlie5 DNA MER1_type -1933 679 511 454 248 145 21 chr9 12319045 12319327 -105543300 - Charlie4a DNA MER1_type -7 501 185 390 318 31 8 chr9 12319826 12319955 -105542672 - L2 LINE L2 -2 3270 3139 745 183 12 24 chr9 12320628 12320792 -105541835 + AluSg/x SINE Alu 119 280 -32 22 0 0 0 chr9 12321210 12321232 -105541395 + AT_rich Low_complexity Low_complexity 1 22 0 1569 218 76 51 chr9 12322619 12323069 -105539558 + MLT1C LTR MaLR 7 467 0 24 0 0 0 chr9 12323268 12323292 -105539335 + AT_rich Low_complexity Low_complexity 1 24 0 1246 203 88 30 chr9 12323882 12324212 -105538415 + THE1C LTR MaLR 1 349 -26 24 32 0 0 chr9 12324238 12324269 -105538358 + AT_rich Low_complexity Low_complexity 1 31 0 576 261 67 75 chr9 12324703 12324956 -105537671 - AluJo SINE Alu -23 289 39 1002 313 40 13 chr9 12324973 12325516 -105537111 - L1 LINE L1 -3125 3021 2464 906 182 42 42 chr9 12326029 12326221 -105536406 - AluJb SINE Alu -11 301 110 3629 173 50 8 chr9 12326222 12326571 -105536056 - L1MA8 LINE L1 -324 5967 5634 234 0 0 0 chr9 12326571 12326597 -105536030 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 3629 173 50 8 chr9 12326597 12327313 -105535314 - L1MA8 LINE L1 -657 5634 4857 279 321 27 27 chr9 12327434 12327621 -105535006 - L1 LINE L1 -3324 2822 2636 540 303 27 90 chr9 12327694 12327945 -105534682 + L1M4 LINE L1 13 221 -6321 1618 140 0 0 chr9 12327945 12328223 -105534404 + AluYa5 SINE Alu 28 305 -6 540 303 27 90 chr9 12328223 12328449 -105534178 + L1M4 LINE L1 221 460 -6082 1582 206 57 40 chr9 12328748 12329151 -105533476 + MER77 LTR ERV1 196 605 0 409 242 8 32 chr9 12329886 12330010 -105532617 - L1M4 LINE L1 -6420 122 2 2181 269 79 24 chr9 12330063 12331188 -105531439 + L1M4 LINE L1 3125 4311 -2333 678 80 0 10 chr9 12331961 12332061 -105530566 + AluY SINE Alu 195 293 -18 234 227 21 10 chr9 12332098 12332195 -105530432 + (TA)n Simple_repeat Simple_repeat 2 99 0 1125 255 35 22 chr9 12333762 12334080 -105528547 + Charlie1b DNA MER1_type 1 322 -201 291 243 40 0 chr9 12334161 12334235 -105528392 + Charlie1b DNA MER1_type 442 518 -5 23 54 0 0 chr9 12334812 12334849 -105527778 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr9 12334916 12334957 -105527670 + AT_rich Low_complexity Low_complexity 1 41 0 196 326 43 22 chr9 12336198 12336290 -105526337 + MIR SINE MIR 58 151 -57 1185 188 87 7 chr9 12336607 12336883 -105525744 - L1MC/D LINE L1 -600 5733 5436 671 192 150 21 chr9 12336958 12337080 -105525547 - L1MA4 LINE L1 -15 6285 6180 1826 153 17 3 chr9 12337080 12337381 -105525246 - AluSx SINE Alu -7 305 1 671 192 150 21 chr9 12337381 12337451 -105525176 - L1MA4 LINE L1 -120 6180 6068 1061 256 37 48 chr9 12337456 12338049 -105524578 - L1MC/D LINE L1 -743 5403 4811 368 244 53 0 chr9 12338049 12338180 -105524447 - L1MA7 LINE L1 -2 6289 4791 334 178 22 0 chr9 12338608 12338698 -105523929 + GA-rich Low_complexity Low_complexity 3 94 0 759 157 36 0 chr9 12338737 12338903 -105523724 + GA-rich Low_complexity Low_complexity 1 172 0 326 209 0 81 chr9 12339005 12339091 -105523536 + HsTC2 DNA Tc2 1 79 -1819 191 305 106 57 chr9 12339197 12339338 -105523289 + MIR SINE MIR 9 156 -106 225 0 0 0 chr9 12339863 12339888 -105522739 + (TTA)n Simple_repeat Simple_repeat 3 27 0 2625 38 0 3 chr9 12339888 12340205 -105522422 - L1PA3 LINE L1 -18 6137 5822 4405 24 1 0 chr9 12340205 12340776 -105521851 + L1P1 LINE L1 4860 5431 -724 300 352 28 11 chr9 12340807 12340983 -105521644 + L2 LINE L2 1303 1481 -1833 338 304 89 0 chr9 12341367 12341502 -105521125 - MLT1J1 LTR MaLR -299 147 1 781 335 67 61 chr9 12341502 12342221 -105520406 - L2 LINE L2 -2591 723 1 337 109 91 0 chr9 12342557 12342612 -105520015 + L1PA12 LINE L1 2535 2594 -4987 8499 140 19 9 chr9 12342622 12344843 -105517784 - L1PA10 LINE L1 -11 6157 3962 2255 103 0 7 chr9 12344843 12345145 -105517482 - AluSg SINE Alu -10 300 1 8499 140 19 9 chr9 12345145 12345208 -105517419 - L1PA10 LINE L1 -2206 3962 3901 516 330 161 43 chr9 12345224 12346059 -105516568 + L2 LINE L2 1851 2783 -531 240 307 69 63 chr9 12346305 12346494 -105516133 + L2 LINE L2 3082 3271 -42 522 0 0 0 chr9 12347234 12347292 -105515335 + (TA)n Simple_repeat Simple_repeat 2 59 0 1681 140 52 55 chr9 12347755 12348120 -105514507 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr9 12348477 12348521 -105514106 + AT_rich Low_complexity Low_complexity 1 44 0 24 53 0 0 chr9 12349017 12349055 -105513572 + AT_rich Low_complexity Low_complexity 1 38 0 1788 239 46 5 chr9 12349134 12349573 -105513054 + MER74C LTR ERVL 4 460 0 527 232 43 23 chr9 12349672 12349877 -105512750 - MER61D LTR ERV1 -17 744 340 633 299 35 44 chr9 12350250 12350805 -105511822 - MER51-int LTR ERV1 -1 8254 6776 302 200 0 0 chr9 12350946 12351001 -105511626 - MER51-int LTR ERV1 -274 7542 7488 1356 251 62 6 chr9 12351356 12351679 -105510948 - MER51-int LTR ERV1 -3671 3420 3080 243 103 0 0 chr9 12352636 12352675 -105509952 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 254 250 0 0 chr9 12352676 12352732 -105509895 + CT-rich Low_complexity Low_complexity 2 57 0 426 20 0 0 chr9 12352732 12352783 -105509844 + (CA)n Simple_repeat Simple_repeat 1 51 0 44 84 0 0 chr9 12354335 12354442 -105508185 + AT_rich Low_complexity Low_complexity 1 107 0 21 82 0 0 chr9 12354784 12354833 -105507794 + AT_rich Low_complexity Low_complexity 1 49 0 270 116 0 0 chr9 12355043 12355086 -105507541 + (TATATG)n Simple_repeat Simple_repeat 6 48 0 1704 322 111 20 chr9 12355494 12356431 -105506196 - L2 LINE L2 -353 2961 1940 225 403 42 21 chr9 12356607 12356798 -105505829 - MIR SINE MIR -2 260 66 384 323 31 8 chr9 12357005 12357135 -105505492 + L2 LINE L2 3139 3271 -1 254 306 83 9 chr9 12357574 12357682 -105504945 + L1MDb LINE L1 142 257 -6286 29225 43 2 1 chr9 12357727 12362165 -105500462 + L1PA4 LINE L1 1714 6155 0 1585 216 118 60 chr9 12362162 12362892 -105499735 + L1MDb LINE L1 1180 1951 -4589 * 21 57 0 0 chr9 12362931 12362966 -105499661 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr9 12363036 12363074 -105499553 + AT_rich Low_complexity Low_complexity 1 38 0 24 53 0 0 chr9 12363142 12363180 -105499447 + AT_rich Low_complexity Low_complexity 1 38 0 330 343 50 22 chr9 12363419 12363600 -105499027 + MIR SINE MIR 46 231 -31 833 190 80 6 chr9 12365549 12365712 -105496915 - FAM SINE Alu 0 175 1 21 0 0 0 chr9 12366951 12366972 -105495655 + AT_rich Low_complexity Low_complexity 1 21 0 273 210 8 48 chr9 12367512 12367636 -105494991 + A-rich Low_complexity Low_complexity 4 122 0 957 283 84 10 chr9 12367658 12367969 -105494658 + MLT1H LTR MaLR 12 345 -204 524 316 161 0 chr9 12368393 12368611 -105494016 + MIR SINE MIR 7 259 -3 21 36 0 0 chr9 12368738 12368766 -105493861 + AT_rich Low_complexity Low_complexity 1 28 0 3046 244 58 37 chr9 12368894 12371073 -105491554 - L1MB8 LINE L1 -15 6163 3923 233 260 87 8 chr9 12371101 12371228 -105491399 - L1MB8 LINE L1 -3114 3032 2896 1533 198 38 25 chr9 12371949 12372263 -105490364 - MLT1A1 LTR MaLR 0 365 48 1194 108 0 17 chr9 12372268 12372444 -105490183 + AluSg/x SINE Alu 140 312 0 237 119 0 0 chr9 12373118 12373160 -105489467 + (GA)n Simple_repeat Simple_repeat 2 43 0 204 67 0 0 chr9 12374840 12374870 -105487757 + (T)n Simple_repeat Simple_repeat 1 30 0 567 283 106 1 chr9 12375353 12375556 -105487071 + MIR SINE MIR 38 261 -1 756 203 18 16 chr9 12376241 12376434 -105486193 - L1MC3 LINE L1 -18 7758 6137 228 281 0 0 chr9 12376432 12376496 -105486131 - L1ME LINE L1 -331 5790 5727 * 249 210 0 0 chr9 12377128 12377190 -105485437 + CT-rich Low_complexity Low_complexity 2 63 0 24 67 0 0 chr9 12377405 12377450 -105485177 + AT_rich Low_complexity Low_complexity 1 45 0 540 256 150 11 chr9 12377535 12377715 -105484912 + MER58C DNA MER1_type 1 205 -10 27 49 0 0 chr9 12377995 12378036 -105484591 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr9 12378103 12378139 -105484488 + AT_rich Low_complexity Low_complexity 1 36 0 1125 252 117 10 chr9 12378717 12379190 -105483437 - Charlie1b DNA MER1_type -5 518 1 307 271 82 35 chr9 12379415 12379585 -105483042 - L1ME4a LINE L1 -175 5946 5769 2005 110 7 24 chr9 12379750 12380040 -105482587 + AluSg SINE Alu 14 298 -12 30 0 0 0 chr9 12380080 12380110 -105482517 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr9 12380164 12380186 -105482441 + (TG)n Simple_repeat Simple_repeat 2 23 0 278 281 26 26 chr9 12381711 12381825 -105480802 - L1ME LINE L1 -312 5809 5696 34 55 0 0 chr9 12382867 12382922 -105479705 + AT_rich Low_complexity Low_complexity 1 55 0 192 40 0 0 chr9 12383095 12383120 -105479507 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 1374 189 4 8 chr9 12384800 12385049 -105477578 + AluJo SINE Alu 1 248 -64 522 0 0 0 chr9 12385065 12385123 -105477504 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 24 53 0 0 chr9 12385281 12385319 -105477308 + AT_rich Low_complexity Low_complexity 1 38 0 360 0 0 0 chr9 12386036 12386076 -105476551 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 264 0 19 chr9 12386080 12386133 -105476494 + MIR SINE MIR 209 260 -2 186 308 25 83 chr9 12386177 12386297 -105476330 - MIR SINE MIR -75 187 75 182 225 75 0 chr9 12387666 12387706 -105474921 - L2 LINE L2 -3 3310 3268 206 99 89 10 chr9 12387792 12387893 -105474734 + (TA)n Simple_repeat Simple_repeat 2 110 0 204 350 49 28 chr9 12389068 12389211 -105473416 - MIR SINE MIR -109 153 8 187 367 11 11 chr9 12389216 12389306 -105473321 - L2 LINE L2 0 3272 3183 233 237 0 0 chr9 12389603 12389662 -105472965 - L1MC4 LINE L1 -1344 6698 6640 * 264 169 34 0 chr9 12389610 12389669 -105472958 + L1MC4 LINE L1 6640 6700 -1342 240 86 0 0 chr9 12389719 12389754 -105472873 + (CA)n Simple_repeat Simple_repeat 2 36 0 366 274 112 45 chr9 12390108 12390287 -105472340 + LTR67 LTR ERVL 367 557 0 261 277 80 62 chr9 12390663 12390775 -105471852 + L2 LINE L2 3199 3312 -1 342 0 0 0 chr9 12390870 12390908 -105471719 + (CA)n Simple_repeat Simple_repeat 2 39 0 3732 166 20 22 chr9 12392177 12392919 -105469708 - L1MA4 LINE L1 -13 6287 5547 22 0 0 0 chr9 12393055 12393077 -105469550 + AT_rich Low_complexity Low_complexity 1 22 0 8404 159 15 2 chr9 12393775 12395187 -105467440 - Tigger1 DNA MER2_type 0 2418 989 388 346 62 44 chr9 12395283 12395604 -105467023 + MLT1H LTR MaLR 17 343 -206 29 0 0 0 chr9 12395889 12395918 -105466709 + AT_rich Low_complexity Low_complexity 1 29 0 302 365 161 19 chr9 12396192 12396403 -105466224 - MIR SINE MIR -12 250 10 194 337 60 12 chr9 12397018 12397101 -105465526 + MIR SINE MIR 26 112 -150 25 31 0 0 chr9 12397631 12397663 -105464964 + AT_rich Low_complexity Low_complexity 1 32 0 441 36 0 0 chr9 12399393 12399448 -105463179 + (CA)n Simple_repeat Simple_repeat 2 56 0 744 134 0 0 chr9 12399462 12399574 -105463053 - AluSg/x SINE Alu -17 295 184 2018 137 0 0 chr9 12400268 12400561 -105462066 + AluSg SINE Alu 1 293 -17 438 53 0 0 chr9 12400578 12400635 -105461992 + (TG)n Simple_repeat Simple_repeat 2 58 0 1363 127 0 19 chr9 12402274 12402479 -105460148 - AluSg/x SINE Alu -20 290 90 9783 190 28 74 chr9 12403036 12403594 -105459033 + L1MA5 LINE L1 2464 3046 -3254 801 242 68 57 chr9 12403594 12403842 -105458785 + AluJo SINE Alu 39 289 -23 9783 190 28 74 chr9 12403842 12406718 -105455909 + L1MA5 LINE L1 3046 5944 -356 2044 109 0 7 chr9 12406718 12407011 -105455616 + AluSx SINE Alu 1 291 -21 9783 190 28 74 chr9 12407011 12407353 -105455274 + L1MA5 LINE L1 5944 6300 0 218 366 128 26 chr9 12407415 12407642 -105454985 + L2 LINE L2 1459 1708 -1606 325 197 23 3 chr9 12407890 12407966 -105454661 + MSTA LTR MaLR 1 78 -354 3771 195 30 62 chr9 12408189 12409383 -105453244 + L1PA13 LINE L1 1540 2728 -4069 3297 149 2 23 chr9 12409395 12409713 -105452914 + L1PA15 LINE L1 5594 5896 -269 2128 123 3 0 chr9 12409713 12410022 -105452605 + AluSg SINE Alu 1 310 0 3297 149 2 23 chr9 12410022 12410265 -105452362 + L1PA15 LINE L1 5896 6143 -22 27 49 0 0 chr9 12411089 12411130 -105451497 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr9 12411956 12411980 -105450647 + AT_rich Low_complexity Low_complexity 1 24 0 1629 203 76 51 chr9 12412179 12412627 -105450000 - MLT1C LTR MaLR 0 467 9 454 254 104 67 chr9 12412864 12413072 -105449555 + LTR37A LTR ERV1 22 270 -156 22 0 0 0 chr9 12413072 12413094 -105449533 + AT_rich Low_complexity Low_complexity 1 22 0 454 254 104 67 chr9 12413094 12413210 -105449417 + LTR37A LTR ERV1 270 380 -46 582 311 28 6 chr9 12413210 12413390 -105449237 + L1MA8 LINE L1 375 558 -6095 * 1441 233 81 3 chr9 12413377 12413699 -105448928 + L1MA8 LINE L1 1134 1480 -5173 10728 208 26 22 chr9 12413704 12415374 -105447253 + L1MA8 LINE L1 3240 4903 -1974 7810 16 0 0 chr9 12415374 12416465 -105446162 + L1PA2 LINE L1 5062 6152 -3 2068 133 13 0 chr9 12416473 12416774 -105445853 + AluSx SINE Alu 1 305 -7 10728 208 26 22 chr9 12416774 12418841 -105443786 + L1MA8 LINE L1 4909 6874 -3 241 172 47 31 chr9 12418844 12418908 -105443719 + L1MA7 LINE L1 5993 6057 -234 715 161 65 11 chr9 12418909 12419095 -105443532 + L1MA7 LINE L1 6095 6290 -1 496 294 19 102 chr9 12419449 12419714 -105442913 - MIR SINE MIR -6 256 14 22 0 0 0 chr9 12421125 12421147 -105441480 + AT_rich Low_complexity Low_complexity 1 22 0 3864 180 42 45 chr9 12421190 12421817 -105440810 - L1MC1 LINE L1 0 6333 5708 1986 154 0 0 chr9 12421817 12422109 -105440518 - AluSx SINE Alu -20 292 1 3864 180 42 45 chr9 12422109 12422382 -105440245 - L1MC1 LINE L1 -625 5708 5436 714 181 150 21 chr9 12422457 12422579 -105440048 - L1MA4 LINE L1 -15 6285 6180 2107 120 17 3 chr9 12422579 12422880 -105439747 - AluSx SINE Alu -7 305 1 714 181 150 21 chr9 12422880 12422950 -105439677 - L1MA4 LINE L1 -120 6180 6068 1448 246 25 21 chr9 12422955 12423537 -105439090 - L1MC1 LINE L1 -743 5403 4857 405 221 53 0 chr9 12423542 12423673 -105438954 - L1MA7 LINE L1 -2 6289 6152 2368 288 11 34 chr9 12423717 12424915 -105437712 + L1PA13 LINE L1 1 1686 -5101 798 265 35 3 chr9 12424915 12425202 -105437425 - L1MC1 LINE L1 -3719 2427 2132 258 376 73 28 chr9 12426191 12426685 -105435942 + L2 LINE L2 1978 2493 -821 300 351 60 66 chr9 12426852 12427365 -105435262 + L2 LINE L2 2804 3313 0 31 76 0 0 chr9 12427573 12427639 -105434988 + AT_rich Low_complexity Low_complexity 1 66 0 33 25 0 0 chr9 12427697 12427737 -105434890 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr9 12427988 12428020 -105434607 + AT_rich Low_complexity Low_complexity 1 32 0 296 346 69 20 chr9 12428363 12428713 -105433914 + L1ME LINE L1 5362 5728 -393 294 95 0 0 chr9 12431648 12431690 -105430937 + (CA)n Simple_repeat Simple_repeat 1 42 0 258 268 84 26 chr9 12431995 12432185 -105430442 - HAL1 LINE L1 -61 2446 2246 50 18 0 0 chr9 12433311 12433368 -105429259 + AT_rich Low_complexity Low_complexity 1 57 0 243 224 20 10 chr9 12434047 12434145 -105428482 + (TA)n Simple_repeat Simple_repeat 1 99 0 678 80 0 10 chr9 12434182 12434282 -105428345 - AluY SINE Alu -18 293 195 1872 135 0 28 chr9 12435023 12435312 -105427315 + AluY SINE Alu 3 283 -28 1918 168 111 0 chr9 12435390 12435770 -105426857 - MSTB LTR MaLR 0 426 5 319 343 93 7 chr9 12435951 12436091 -105426536 - L1ME LINE L1 -337 5833 5682 1386 285 56 39 chr9 12436443 12436726 -105425901 + L1ME1 LINE L1 3566 3843 -2303 1801 149 79 22 chr9 12436726 12437081 -105425546 + THE1C LTR MaLR 1 375 0 1386 285 56 39 chr9 12437081 12437768 -105424859 + L1ME1 LINE L1 3843 4552 -1594 926 191 56 0 chr9 12437775 12437990 -105424637 + L1MA4 LINE L1 6068 6294 -6 2217 245 35 26 chr9 12438068 12438607 -105424020 + MLT2B3 LTR ERVL 1 544 -10 588 294 52 8 chr9 12438628 12438880 -105423747 + L1ME1 LINE L1 4605 4867 -1279 192 346 191 33 chr9 12439307 12439790 -105422837 - L2 LINE L2 -557 2757 2199 2014 218 62 19 chr9 12439806 12440324 -105422303 - MER90 LTR ERV1 0 614 75 265 290 0 0 chr9 12440395 12440457 -105422170 - MER90 LTR ERV1 -525 89 28 23 68 0 0 chr9 12440881 12440925 -105421702 + AT_rich Low_complexity Low_complexity 1 44 0 1937 144 13 3 chr9 12441486 12441785 -105420842 - AluSx SINE Alu -10 302 1 21 82 0 0 chr9 12442969 12443018 -105419609 + AT_rich Low_complexity Low_complexity 1 49 0 38 0 0 0 chr9 12443033 12443071 -105419556 + AT_rich Low_complexity Low_complexity 1 38 0 528 90 13 0 chr9 12443256 12443334 -105419293 + L1MB1 LINE L1 5336 5414 -769 2675 192 20 2 chr9 12443350 12443907 -105418720 + L1MB1 LINE L1 5591 6157 -11 225 0 0 0 chr9 12443907 12443932 -105418695 + (CA)n Simple_repeat Simple_repeat 1 25 0 389 349 123 21 chr9 12443945 12444515 -105418112 + HAL1 LINE L1 24 651 -1856 342 0 0 0 chr9 12444627 12444665 -105417962 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr9 12445724 12445745 -105416882 + AT_rich Low_complexity Low_complexity 1 21 0 348 171 43 0 chr9 12446027 12446097 -105416530 + L1ME LINE L1 5550 5622 -542 22 35 0 0 chr9 12446097 12446126 -105416501 + AT_rich Low_complexity Low_complexity 1 29 0 241 264 109 30 chr9 12446374 12446703 -105415924 + L1ME1 LINE L1 4947 5304 -842 908 254 75 20 chr9 12446748 12447224 -105415403 + L1ME1 LINE L1 5494 6103 -63 27064 128 23 72 chr9 12447323 12450127 -105412500 - L1PA8 LINE L1 -13 6159 3218 2097 102 13 25 chr9 12450127 12450441 -105412186 - AluSq SINE Alu -3 310 1 27064 128 23 72 chr9 12450441 12451666 -105410961 - L1PA8 LINE L1 -2954 3218 1934 2138 56 42 24 chr9 12451666 12451953 -105410674 + AluY SINE Alu 1 292 -19 27064 128 23 72 chr9 12451953 12454411 -105408216 - L1PA8 LINE L1 -4238 1934 9 6137 116 49 21 chr9 12454490 12455578 -105407049 - L1MA2 LINE L1 0 6304 5184 189 422 92 0 chr9 12456232 12456341 -105406286 + L2 LINE L2 3151 3269 -3 2139 99 7 10 chr9 12457039 12457343 -105405284 + AluSg SINE Alu 1 303 -7 21 36 0 0 chr9 12457518 12457546 -105405081 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 12457738 12457760 -105404867 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 12458111 12458146 -105404481 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr9 12460582 12460624 -105402003 + (TG)n Simple_repeat Simple_repeat 2 43 0 2137 111 3 0 chr9 12460624 12460921 -105401706 - AluSg SINE Alu -12 298 1 1578 228 144 78 chr9 12461194 12461800 -105400827 - MLT1E1 LTR MaLR -8 646 1 808 268 47 33 chr9 12462873 12463339 -105399288 - Charlie1b DNA MER1_type -1 522 16 202 200 0 0 chr9 12463830 12463870 -105398757 + (CA)n Simple_repeat Simple_repeat 1 40 0 337 319 65 27 chr9 12464064 12464249 -105398378 + L1MEd LINE L1 904 1095 -5024 183 184 20 82 chr9 12464273 12464322 -105398305 - L2 LINE L2 -2630 684 639 627 280 99 35 chr9 12464931 12465163 -105397464 - MIR SINE MIR -14 248 2 337 321 78 45 chr9 12465220 12465578 -105397049 + L1 LINE L1 3977 4346 -1800 316 159 14 29 chr9 12466347 12466416 -105396211 + L1M1 LINE L1 5543 5610 -695 1237 212 43 96 chr9 12467240 12467431 -105395196 + MER110A LTR ERV1 5 205 -273 333 0 0 0 chr9 12467431 12467468 -105395159 + (CA)n Simple_repeat Simple_repeat 2 38 0 1237 212 43 96 chr9 12467468 12467801 -105394826 + MER110A LTR ERV1 205 470 -8 1847 99 72 0 chr9 12468123 12468385 -105394242 - AluSg SINE Alu -20 290 10 1514 186 27 27 chr9 12468760 12469056 -105393571 + AluJb SINE Alu 6 301 -11 1402 198 35 31 chr9 12469306 12469624 -105393003 - MLT1A1 LTR MaLR -46 319 1 1542 217 160 5 chr9 12469883 12470320 -105392307 + MLT1D LTR MaLR 1 505 0 385 280 21 0 chr9 12470558 12470651 -105391976 - MER81 DNA DNA 0 114 20 1242 228 120 7 chr9 12470747 12471181 -105391446 + Charlie4a DNA MER1_type 25 507 -1 1772 174 52 0 chr9 12472793 12473120 -105389507 - MER2 DNA MER2_type 0 344 1 304 253 63 11 chr9 12474068 12474163 -105388464 - MIR SINE MIR -162 100 1 2221 4 19 0 chr9 12474322 12474584 -105388043 + L1PA3 LINE L1 5889 6155 0 22 0 0 0 chr9 12475150 12475172 -105387455 + AT_rich Low_complexity Low_complexity 1 22 0 32 0 0 0 chr9 12475213 12475245 -105387382 + AT_rich Low_complexity Low_complexity 1 32 0 1616 127 6 106 chr9 12475249 12475580 -105387047 + AluSx SINE Alu 2 299 -3 471 128 139 0 chr9 12475614 12475700 -105386927 + AluSg/x SINE Alu 209 306 -6 4892 160 50 16 chr9 12475716 12476380 -105386247 - L1MA7 LINE L1 -6 6285 5645 234 0 0 0 chr9 12476380 12476406 -105386221 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 4892 160 50 16 chr9 12476406 12477151 -105385476 - L1MA7 LINE L1 -646 5645 4828 22 0 0 0 chr9 12477888 12477910 -105384717 + AT_rich Low_complexity Low_complexity 1 22 0 2267 230 54 17 chr9 12478064 12478655 -105383972 - L1MB7 LINE L1 -44 6140 5528 284 250 0 14 chr9 12480781 12480853 -105381774 - MER77 LTR ERV1 0 605 535 1703 209 45 76 chr9 12481592 12482080 -105380547 - MER77 LTR ERV1 0 605 133 2044 209 44 65 chr9 12482084 12482530 -105380097 + MLT2B1 LTR ERVL 3 438 -82 1868 182 23 8 chr9 12482530 12482926 -105379701 + L1MA5 LINE L1 5897 6298 -2 2044 209 44 65 chr9 12482926 12483006 -105379621 + MLT2B1 LTR ERVL 438 518 -2 410 269 43 50 chr9 12483006 12483144 -105379483 - MER77 LTR ERV1 -468 137 1 1407 279 67 4 chr9 12483656 12484492 -105378135 - L1M4 LINE L1 -3475 3169 2283 4460 246 53 65 chr9 12484599 12486460 -105376167 - L1M4 LINE L1 -4550 2096 264 2565 4 0 0 chr9 12486460 12486738 -105375889 - AluYa5 SINE Alu -6 305 28 4460 246 53 65 chr9 12486738 12486998 -105375629 - L1M4 LINE L1 -6382 264 2 4328 253 94 19 chr9 12487051 12488948 -105373679 + L1MC2 LINE L1 2627 4665 -1481 4146 184 99 6 chr9 12489014 12489900 -105372727 + L1MC2 LINE L1 5355 6323 -21 410 275 24 12 chr9 12489910 12490077 -105372550 - Charlie5 DNA MER1_type -1933 679 511 492 292 162 5 chr9 12491497 12491682 -105370945 - MIR SINE MIR -1 261 48 252 224 15 60 chr9 12491785 12491852 -105370775 - L2 LINE L2 -5 3267 3204 3447 183 58 36 chr9 12491952 12492073 -105370554 - L1MA7 LINE L1 -4 6287 6170 1676 161 7 33 chr9 12492073 12492377 -105370250 - AluJb SINE Alu -8 304 9 3447 183 58 36 chr9 12492377 12493096 -105369531 - L1MA7 LINE L1 -121 6170 5428 328 313 30 0 chr9 12493133 12493267 -105369360 - L1M3b LINE L1 -6139 142 5 816 139 51 126 chr9 12493957 12494203 -105368424 + AluJb SINE Alu 87 316 0 370 95 53 0 chr9 12494484 12494579 -105368048 + (TA)n Simple_repeat Simple_repeat 2 101 0 307 272 126 19 chr9 12494835 12494938 -105367689 - L2 LINE L2 -7 3306 3193 32 0 0 0 chr9 12495084 12495116 -105367511 + AT_rich Low_complexity Low_complexity 1 32 0 497 218 6 0 chr9 12495119 12495289 -105367338 + (TA)n Simple_repeat Simple_repeat 2 172 0 316 260 0 60 chr9 12495293 12495443 -105367184 + L1MC4 LINE L1 6614 6704 -1338 319 193 0 0 chr9 12495448 12495505 -105367122 - AluS SINE Alu -244 57 1 205 146 42 0 chr9 12496695 12496743 -105365884 + (TA)n Simple_repeat Simple_repeat 2 51 0 2327 195 13 7 chr9 12496797 12497253 -105365374 - MER65C LTR ERV1 0 461 3 240 226 38 0 chr9 12497708 12497761 -105364866 + CT-rich Low_complexity Low_complexity 2 56 0 298 235 47 0 chr9 12497773 12497858 -105364769 - L1MC4 LINE L1 -1340 6702 6614 254 302 23 0 chr9 12497859 12497945 -105364682 - L1MC4 LINE L1 -1340 6702 6615 * 255 259 74 0 chr9 12497872 12497953 -105364674 + L1MC4 LINE L1 6614 6700 -1342 1177 182 19 0 chr9 12497957 12498166 -105364461 - AluJo SINE Alu -17 295 83 604 354 42 20 chr9 12498453 12498926 -105363701 - L1ME3A LINE L1 -289 6117 5622 198 0 0 0 chr9 12499645 12499667 -105362960 + (TG)n Simple_repeat Simple_repeat 2 23 0 1380 318 110 58 chr9 12499802 12500323 -105362304 - L1ME3A LINE L1 -4100 2463 1970 324 0 0 0 chr9 12500323 12500359 -105362268 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1914 141 0 7 chr9 12500366 12500650 -105361977 - AluSx SINE Alu -29 283 2 1380 318 110 58 chr9 12500650 12501492 -105361135 - L1ME3A LINE L1 -4598 1965 857 3375 148 74 5 chr9 12502103 12502713 -105359914 + MER39B LTR ERV1 2 653 0 358 261 23 39 chr9 12503949 12504079 -105358548 + MIR SINE MIR 67 194 -68 1422 183 70 12 chr9 12504101 12504590 -105358037 - L1M1 LINE L1 -697 5603 5091 388 207 0 0 chr9 12504590 12504668 -105357959 + L1MA5 LINE L1 6202 6288 -12 559 228 146 67 chr9 12504688 12504942 -105357685 + L1MC4 LINE L1 7446 7719 -323 * 2728 33 0 0 chr9 12504926 12505257 -105357370 - L1P LINE L1 -3120 3026 2696 226 118 0 0 chr9 12505260 12505294 -105357333 - AluJo SINE Alu -230 73 40 540 232 76 35 chr9 12505311 12505509 -105357118 - L1MC4 LINE L1 -140 7902 7697 12201 42 2 2 chr9 12505509 12507041 -105355586 + L1P LINE L1 3525 5056 -1090 21 0 0 0 chr9 12507626 12507647 -105354980 + AT_rich Low_complexity Low_complexity 1 21 0 273 210 8 48 chr9 12508187 12508311 -105354316 + A-rich Low_complexity Low_complexity 4 122 0 939 286 84 10 chr9 12508333 12508644 -105353983 + MLT1H LTR MaLR 12 345 -204 471 250 30 9 chr9 12508638 12508782 -105353845 + MLT1H LTR MaLR 407 525 -24 * 279 221 11 21 chr9 12508790 12508885 -105353742 + (TA)n Simple_repeat Simple_repeat 1 94 0 384 22 0 0 chr9 12508960 12509005 -105353622 + (TA)n Simple_repeat Simple_repeat 1 45 0 1702 227 78 49 chr9 12509642 12510464 -105352163 + L1MDa LINE L1 1763 2618 -3922 257 282 122 35 chr9 12510965 12511192 -105351435 + L1M2 LINE L1 5392 5639 -570 183 256 0 0 chr9 12513374 12513413 -105349214 - MIR SINE MIR -21 241 203 1330 180 38 64 chr9 12513622 12514002 -105348625 + MER67C LTR ERV1 1 403 -271 228 298 0 71 chr9 12514013 12514091 -105348536 + MER67D LTR ERV1 356 427 -87 3940 135 21 6 chr9 12514091 12514726 -105347901 + MER39B LTR ERV1 1 622 0 251 273 15 0 chr9 12514727 12514793 -105347834 + MER67D LTR ERV1 440 506 -8 1963 134 10 26 chr9 12514879 12515186 -105347441 - AluSx SINE Alu -10 302 1 22 0 0 0 chr9 12515192 12515214 -105347413 + AT_rich Low_complexity Low_complexity 1 22 0 210 333 48 0 chr9 12515217 12515280 -105347347 - MIR SINE MIR -173 89 24 3804 138 26 5 chr9 12515289 12515911 -105346716 - MER41B LTR ERV1 0 635 1 41 58 0 0 chr9 12516049 12516118 -105346509 + AT_rich Low_complexity Low_complexity 1 69 0 215 205 0 0 chr9 12516654 12516693 -105345934 + (TG)n Simple_repeat Simple_repeat 2 40 0 327 49 0 0 chr9 12516983 12517024 -105345603 + (CA)n Simple_repeat Simple_repeat 2 42 0 402 21 0 0 chr9 12517062 12517109 -105345518 + (CA)n Simple_repeat Simple_repeat 2 48 0 2058 221 54 50 chr9 12517397 12517660 -105344967 + MER92B LTR ERV1 1 262 -374 1728 193 21 19 chr9 12517660 12518034 -105344593 - THE1C LTR MaLR 0 375 1 2058 221 54 50 chr9 12518034 12518404 -105344223 + MER92B LTR ERV1 262 636 0 290 222 11 78 chr9 12518434 12518524 -105344103 - MIR3 SINE MIR -6 202 119 280 336 19 19 chr9 12520666 12520770 -105341857 + MIR SINE MIR 42 145 -63 255 31 0 0 chr9 12521435 12521467 -105341160 + (TA)n Simple_repeat Simple_repeat 2 33 0 315 0 0 0 chr9 12521472 12521507 -105341120 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr9 12521844 12521866 -105340761 + (TA)n Simple_repeat Simple_repeat 1 22 0 219 319 112 26 chr9 12524811 12524927 -105337700 - L2 LINE L2 -4 3309 3184 186 262 19 78 chr9 12525754 12525857 -105336770 - L2 LINE L2 -926 2388 2292 2336 98 10 0 chr9 12525901 12526207 -105336420 - AluY SINE Alu -2 309 1 236 246 138 82 chr9 12526518 12526665 -105335962 + MIR SINE MIR 8 170 -92 1847 143 50 61 chr9 12526665 12527044 -105335583 + THE1C LTR MaLR 1 375 0 236 246 138 82 chr9 12527044 12527091 -105335536 + MIR SINE MIR 170 213 -49 1530 134 9 0 chr9 12527499 12527722 -105334905 + AluSq SINE Alu 5 229 -84 259 309 53 32 chr9 12528902 12528996 -105333631 - MIR3 SINE MIR -103 105 10 34 65 0 0 chr9 12529476 12529538 -105333089 + AT_rich Low_complexity Low_complexity 1 62 0 2310 84 0 3 chr9 12529666 12529963 -105332664 + AluY SINE Alu 1 296 -15 268 371 18 24 chr9 12531063 12531230 -105331397 + Zaphod DNA AcHobo 9 174 -3857 1747 147 4 0 chr9 12531342 12531594 -105331033 - AluSx SINE Alu -53 259 7 25 0 0 0 chr9 12531771 12531796 -105330831 + AT_rich Low_complexity Low_complexity 1 25 0 196 30 61 0 chr9 12532123 12532156 -105330471 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1389 194 18 37 chr9 12532166 12532439 -105330188 - AluJb SINE Alu -44 268 1 195 296 0 0 chr9 12533157 12533201 -105329426 - MIR SINE MIR -139 123 80 329 300 61 70 chr9 12533202 12533432 -105329195 - HAL1 LINE L1 -929 1578 1351 1494 281 50 88 chr9 12533441 12535011 -105327616 + L1PA12 LINE L1 9 2603 -4978 2092 116 0 0 chr9 12535011 12535286 -105327341 + AluSg SINE Alu 1 275 -35 204 67 0 0 chr9 12535290 12535320 -105327307 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 423 0 0 0 chr9 12535897 12535944 -105326683 + (TG)n Simple_repeat Simple_repeat 2 48 0 2245 158 49 7 chr9 12538050 12538460 -105324167 - Tigger2 DNA MER2_type 0 2718 2292 479 113 0 0 chr9 12538464 12538526 -105324101 + MER8 DNA MER2_type 174 235 -4 251 191 16 0 chr9 12539047 12539110 -105323517 + CT-rich Low_complexity Low_complexity 3 66 0 222 111 44 22 chr9 12539188 12539233 -105323394 + T-rich Low_complexity Low_complexity 2 47 0 1510 203 13 19 chr9 12539650 12539961 -105322666 - AluJo SINE Alu -3 309 1 2004 110 21 27 chr9 12540093 12540421 -105322206 - L1PA13 LINE L1 -3 6160 5835 9330 177 30 20 chr9 12540534 12544964 -105317663 - L1PBa LINE L1 -1546 5316 620 441 211 19 0 chr9 12544949 12545053 -105317574 - L1PBa LINE L1 -6668 195 90 * 1803 247 23 11 chr9 12545154 12545632 -105316995 - L1P LINE L1 -1515 4631 4148 3126 212 15 72 chr9 12545632 12545928 -105316699 - L1P LINE L1 -2371 3775 3463 6383 124 9 10 chr9 12545928 12546898 -105315729 - LTR5 LTR ERVK 0 969 1 207 0 0 0 chr9 12546899 12546922 -105315705 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1906 138 4 0 chr9 12546923 12547198 -105315429 - AluSg SINE Alu -32 278 3 3126 212 15 72 chr9 12547198 12547986 -105314641 - L1P LINE L1 -2682 3464 2750 * 4294 72 7 1 chr9 12547984 12548667 -105313960 + L1PA7 LINE L1 5143 5828 -326 1985 92 4 18 chr9 12548668 12548940 -105313687 + AluY SINE Alu 43 310 -1 1371 82 0 0 chr9 12548941 12549111 -105313516 + AluY SINE Alu 123 292 -19 2419 78 3 14 chr9 12549111 12549456 -105313171 + L1PA7 LINE L1 5814 6154 0 21 71 0 0 chr9 12550450 12550492 -105312135 + AT_rich Low_complexity Low_complexity 1 42 0 763 222 21 21 chr9 12550820 12551009 -105311618 - MLT1C LTR MaLR 0 467 279 1390 136 103 7 chr9 12551028 12551300 -105311327 - MER67C LTR ERV1 -307 403 106 2244 133 63 24 chr9 12551301 12551714 -105310913 - Tigger2a DNA MER2_type -5 429 1 496 208 8 17 chr9 12551714 12551828 -105310799 - MER67D LTR ERV1 -401 113 1 231 348 0 42 chr9 12551828 12551946 -105310681 + L2 LINE L2 3163 3275 -38 2047 142 10 0 chr9 12551985 12552287 -105310340 - AluSx SINE Alu -5 307 3 1897 280 76 24 chr9 12554607 12555526 -105307101 - L1ME1 LINE L1 -51 6115 5155 1385 240 47 40 chr9 12555784 12556580 -105306047 - L1MC4 LINE L1 -314 7728 6780 998 275 26 39 chr9 12556646 12557042 -105305585 - MLT1E3 LTR MaLR -1 623 200 268 247 41 0 chr9 12557053 12557126 -105305501 - MLT1C LTR MaLR -391 263 188 28360 118 23 62 chr9 12557864 12563866 -105298761 - L1PA5 LINE L1 -6 6148 419 270 0 0 0 chr9 12563866 12563896 -105298731 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 28360 118 23 62 chr9 12563896 12564292 -105298335 - L1PA5 LINE L1 -5735 419 9 2165 134 30 19 chr9 12565457 12565822 -105296805 - THE1C LTR MaLR -4 371 3 24 67 0 0 chr9 12565927 12565972 -105296655 + AT_rich Low_complexity Low_complexity 1 45 0 300 359 39 0 chr9 12566616 12566719 -105295908 + MER91C DNA MER1_type 2 108 -32 234 347 29 35 chr9 12566848 12567018 -105295609 + L1MCc LINE L1 114 282 -6141 3846 204 10 7 chr9 12567168 12567939 -105294688 - MSTA-int LTR MaLR -877 774 1 2053 190 59 5 chr9 12567939 12568345 -105294282 - MSTA LTR MaLR 0 428 1 3199 215 36 12 chr9 12568345 12569177 -105293450 - L1 LINE L1 -1171 4975 4124 * 3991 178 61 6 chr9 12569176 12569992 -105292635 + L1MB3 LINE L1 5319 6179 -4 491 281 31 6 chr9 12570250 12570410 -105292217 + L1MC5 LINE L1 7762 7925 -36 1773 217 13 0 chr9 12570419 12570793 -105291834 + L1MC1 LINE L1 5950 6328 -5 2222 168 21 46 chr9 12570928 12571363 -105291264 + MLT1C LTR MaLR 1 424 -43 662 168 0 48 chr9 12571361 12571486 -105291141 + MLT1C LTR MaLR 349 467 0 * 2225 126 0 0 chr9 12572104 12572413 -105290214 + AluSq SINE Alu 3 311 -2 647 289 79 33 chr9 12572563 12572728 -105289899 + L1ME2 LINE L1 4624 4780 -1366 1440 104 50 9 chr9 12572728 12572949 -105289678 - MER30 DNA MER1_type 0 230 1 647 289 79 33 chr9 12572949 12573292 -105289335 + L1ME2 LINE L1 4780 5155 -991 3138 115 17 19 chr9 12573351 12573890 -105288737 - L1MA3 LINE L1 0 6305 5768 231 242 62 37 chr9 12573975 12574051 -105288576 + L1ME2 LINE L1 5265 5338 -826 1441 208 48 28 chr9 12574051 12574407 -105288220 + MLT1A1 LTR MaLR 3 365 0 231 242 62 37 chr9 12574407 12574491 -105288136 + L1ME2 LINE L1 5338 5429 -735 696 286 65 26 chr9 12574492 12574903 -105287724 + L1ME2 LINE L1 5719 6148 -16 1753 210 39 50 chr9 12574938 12575376 -105287251 + MER82 DNA MER2_type 2 434 -219 5167 185 16 10 chr9 12575376 12575972 -105286655 - L1P LINE L1 -1218 4928 4322 2336 97 3 0 chr9 12575972 12576281 -105286346 - AluSp SINE Alu -3 310 1 5167 185 16 10 chr9 12576281 12576718 -105285909 - L1P LINE L1 -1824 4322 3889 * 5584 113 28 78 chr9 12576716 12578045 -105284582 + L1PA14 LINE L1 4927 6161 0 195 129 0 0 chr9 12578430 12578461 -105284166 + (A)n Simple_repeat Simple_repeat 1 31 0 745 271 64 9 chr9 12578464 12578682 -105283945 + MER82 DNA MER2_type 424 653 0 3744 121 48 139 chr9 12579285 12580827 -105281800 - pTR5 LTR ERV1 0 2438 741 26 0 0 0 chr9 12580969 12580995 -105281632 + AT_rich Low_complexity Low_complexity 1 26 0 216 163 0 0 chr9 12581107 12581150 -105281477 + (TA)n Simple_repeat Simple_repeat 2 44 0 216 216 0 0 chr9 12581141 12581192 -105281435 + (CA)n Simple_repeat Simple_repeat 2 52 0 1754 155 36 65 chr9 12581192 12581572 -105281055 + Tigger2a DNA MER2_type 1 371 -2337 225 0 0 0 chr9 12581572 12581597 -105281030 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr9 12581724 12581747 -105280880 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 12581784 12581807 -105280820 + AT_rich Low_complexity Low_complexity 1 23 0 193 54 0 54 chr9 12582279 12582316 -105280311 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 24 53 0 0 chr9 12582857 12582895 -105279732 + AT_rich Low_complexity Low_complexity 1 38 0 251 366 59 0 chr9 12583603 12583704 -105278923 + MER91C DNA MER1_type 2 108 -32 1885 166 84 56 chr9 12584195 12584635 -105277992 + L1PA15 LINE L1 5456 5842 -314 234 91 0 0 chr9 12584635 12584668 -105277959 + (TA)n Simple_repeat Simple_repeat 2 34 0 1885 166 84 56 chr9 12584668 12584990 -105277637 + L1PA15 LINE L1 5842 6153 -3 261 117 67 33 chr9 12584993 12585053 -105277574 + Tigger3(Golem) DNA MER2_type 198 259 -2770 23 54 0 0 chr9 12585150 12585187 -105277440 + AT_rich Low_complexity Low_complexity 1 37 0 930 306 93 58 chr9 12586553 12587144 -105275483 + L1M2c LINE L1 7 618 -6171 * 1629 160 16 13 chr9 12587141 12587459 -105275168 - L1 LINE L1 -1751 4395 4077 1930 211 29 88 chr9 12587512 12588101 -105274526 - MLT2B3 LTR ERVL 0 554 1 2233 112 0 0 chr9 12588279 12588582 -105274045 + AluY SINE Alu 7 309 -2 28 29 0 0 chr9 12588885 12588920 -105273707 + AT_rich Low_complexity Low_complexity 1 35 0 201 213 0 0 chr9 12589024 12589071 -105273556 + (TA)n Simple_repeat Simple_repeat 2 48 0 249 83 0 0 chr9 12589082 12589118 -105273509 + (CA)n Simple_repeat Simple_repeat 2 37 0 975 227 10 15 chr9 12589119 12589322 -105273305 - MER8 DNA MER2_type -2 237 36 21 57 0 0 chr9 12589326 12589361 -105273266 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 12589456 12589481 -105273146 + AT_rich Low_complexity Low_complexity 1 25 0 1953 125 4 0 chr9 12589483 12589762 -105272865 + AluSx SINE Alu 3 282 -30 317 252 0 0 chr9 12589769 12589876 -105272751 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 704 61 10 0 chr9 12590043 12590141 -105272486 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 265 235 37 0 chr9 12590277 12590358 -105272269 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 240 311 68 25 chr9 12590497 12590658 -105271969 - L1 LINE L1 -1983 4163 3996 701 335 23 23 chr9 12590675 12591102 -105271525 - L1ME3A LINE L1 -17 6153 5727 1609 220 35 27 chr9 12591138 12591511 -105271116 + L1MDa LINE L1 18 393 -6147 1450 118 45 0 chr9 12591597 12591817 -105270810 + MER30 DNA MER1_type 1 230 0 7730 39 2 5 chr9 12592548 12594278 -105268349 - L1PA4 LINE L1 -3 6152 4425 23573 40 9 2 chr9 12594278 12597246 -105265381 + L1PA4 LINE L1 1408 4398 -1748 549 286 132 19 chr9 12598106 12598372 -105264255 + MLT1I LTR MaLR 111 406 -3 21 57 0 0 chr9 12598764 12598799 -105263828 + AT_rich Low_complexity Low_complexity 1 35 0 1844 203 84 66 chr9 12598908 12599406 -105263221 + MER67D LTR ERV1 1 507 -7 791 349 29 14 chr9 12599815 12600165 -105262462 + Charlie6 DNA MER1_type 21 375 -3125 1197 150 340 3 chr9 12600306 12600600 -105262027 - MSTA LTR MaLR -34 394 2 968 97 7 14 chr9 12600601 12600745 -105261882 - THE1C-int LTR MaLR 0 1580 1438 6336 150 60 6 chr9 12600756 12601829 -105260798 - THE1C-int LTR MaLR -449 1131 1 1678 155 78 19 chr9 12601841 12602163 -105260464 - THE1C LTR MaLR -34 341 1 225 247 123 0 chr9 12602166 12602247 -105260380 + Charlie6 DNA MER1_type 636 726 -2774 402 279 81 25 chr9 12603174 12603335 -105259292 - MLT1J2 LTR MaLR -8 442 273 213 196 0 0 chr9 12605842 12605893 -105256734 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 57 0 0 chr9 12605964 12605999 -105256628 + AT_rich Low_complexity Low_complexity 1 35 0 34 79 0 0 chr9 12606157 12606233 -105256394 + AT_rich Low_complexity Low_complexity 1 76 0 36 53 0 0 chr9 12606721 12606778 -105255849 + AT_rich Low_complexity Low_complexity 1 57 0 287 221 12 0 chr9 12607020 12607106 -105255521 + (TA)n Simple_repeat Simple_repeat 2 88 0 250 295 57 57 chr9 12607187 12607292 -105255335 - MIR SINE MIR -147 115 11 30 27 0 0 chr9 12608165 12608202 -105254425 + AT_rich Low_complexity Low_complexity 1 37 0 22 70 0 0 chr9 12608671 12608714 -105253913 + AT_rich Low_complexity Low_complexity 1 43 0 979 225 4 26 chr9 12608730 12608957 -105253670 - L1MD2 LINE L1 -17 6342 6121 5239 201 28 7 chr9 12609404 12610653 -105251974 - L1MC1 LINE L1 -6 6396 5122 321 246 0 0 chr9 12610655 12610720 -105251907 - L1MC1 LINE L1 -4041 2355 2291 1994 162 123 5 chr9 12610960 12611343 -105251284 - MSTA LTR MaLR 0 428 1 10579 266 88 28 chr9 12662579 12664606 -105198021 + L1PB4 LINE L1 1337 3242 -2914 234 0 0 0 chr9 12664606 12664632 -105197995 + (GA)n Simple_repeat Simple_repeat 2 27 0 10579 266 88 28 chr9 12664632 12667122 -105195505 + L1PB4 LINE L1 3242 6061 -95 586 305 126 41 chr9 12667554 12667958 -105194669 - L1MC5 LINE L1 -45 7916 7434 22 0 0 0 chr9 12667958 12667980 -105194647 + AT_rich Low_complexity Low_complexity 1 22 0 586 305 126 41 chr9 12667980 12668092 -105194535 - L1MC5 LINE L1 -527 7434 7333 214 214 29 58 chr9 12668404 12668507 -105194120 + (TATAA)n Simple_repeat Simple_repeat 1 100 0 22 80 0 0 chr9 12669021 12669071 -105193556 + AT_rich Low_complexity Low_complexity 1 50 0 9551 207 34 13 chr9 12669476 12669704 -105192923 + L1P5 LINE L1 2694 2916 -3235 2782 7 0 0 chr9 12669704 12670008 -105192619 + AluYa5 SINE Alu 1 304 -7 9551 207 34 13 chr9 12670008 12672780 -105189847 + L1P5 LINE L1 2916 5754 -397 2890 193 63 15 chr9 12672880 12673564 -105189063 - L1PA12 LINE L1 -4811 2773 2057 225 270 0 16 chr9 12673601 12673664 -105188963 - L1PA12 LINE L1 -5660 1925 1864 324 356 37 30 chr9 12673956 12674226 -105188401 - L1M2 LINE L1 -5782 1067 796 1137 323 65 36 chr9 12674338 12675149 -105187478 - L1PA12 LINE L1 -5660 1921 10 1136 234 69 76 chr9 12676599 12676992 -105185635 + MLT1B LTR MaLR 1 390 0 1013 287 45 27 chr9 12677016 12677417 -105185210 - L1MCc LINE L1 -5994 429 22 953 291 175 41 chr9 12677827 12678335 -105184292 - MLT1H1 LTR MaLR 0 555 15 237 65 0 0 chr9 12678338 12678369 -105184258 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 301 48 0 chr9 12678706 12678789 -105183838 - HAL1 LINE L1 -16 2491 2405 1184 216 17 6 chr9 12678829 12679160 -105183467 + MER74C LTR ERVL 3 419 -139 302 266 115 91 chr9 12680582 12680966 -105181661 + MLT1J LTR MaLR 45 437 -74 437 316 175 0 chr9 12681202 12681408 -105181219 - MIR SINE MIR 0 262 21 1025 216 9 0 chr9 12682198 12682416 -105180211 - THE1-int LTR MaLR -33 1547 1328 620 149 35 8 chr9 12682522 12682742 -105179885 + L1PA8A LINE L1 112 519 -5356 323 130 52 0 chr9 12682740 12682817 -105179810 - L1P LINE L1 -2962 3184 3104 * 10054 191 17 23 chr9 12682821 12683511 -105179116 + L1PA8A LINE L1 523 1216 -5245 350 85 17 0 chr9 12683511 12683570 -105179057 + (CAA)n Simple_repeat Simple_repeat 1 60 0 10054 191 17 23 chr9 12683570 12685656 -105176971 + L1PA8A LINE L1 1216 3344 -3117 14183 131 13 0 chr9 12685764 12688832 -105173795 + L1PA8A LINE L1 3343 6441 -5 1800 210 82 12 chr9 12688897 12689325 -105173302 + LOR1b LTR ERV1 1 458 -3 1513 163 12 0 chr9 12690022 12690273 -105172354 + MSTA LTR MaLR 1 254 -174 310 146 21 0 chr9 12690748 12690796 -105171831 - LOR1a LTR ERV1 0 497 449 29 84 0 0 chr9 12690947 12691018 -105171609 + AT_rich Low_complexity Low_complexity 1 71 0 189 74 0 0 chr9 12691704 12691731 -105170896 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 239 352 43 31 chr9 12692348 12692510 -105170117 + MIR SINE MIR 32 195 -67 302 268 92 52 chr9 12692593 12692696 -105169931 + MIR SINE MIR 41 153 -109 1689 187 57 157 chr9 12692696 12693504 -105169123 + LTR8A LTR ERV1 1 727 0 302 268 92 52 chr9 12693504 12693553 -105169074 + MIR SINE MIR 153 199 -63 25 0 0 0 chr9 12694862 12694887 -105167740 + AT_rich Low_complexity Low_complexity 1 25 0 2270 96 3 0 chr9 12695926 12696228 -105166399 + AluSx SINE Alu 2 304 -8 21 36 0 0 chr9 12696317 12696345 -105166282 + AT_rich Low_complexity Low_complexity 1 28 0 719 135 0 0 chr9 12696379 12696483 -105166144 - MLT1A1 LTR MaLR 0 365 262 566 167 32 56 chr9 12696485 12696611 -105166016 - MLT1A1 LTR MaLR -242 123 1 8652 223 63 60 chr9 12696663 12701167 -105161460 - L1MA9 LINE L1 -11 6537 2015 3106 148 17 0 chr9 12701247 12701725 -105160902 + LTR10B LTR ERV1 20 505 0 650 176 170 13 chr9 12701725 12701878 -105160749 - MER4A-int LTR ERV1 -6421 177 1 3397 133 6 50 chr9 12701885 12702508 -105160119 - MER4A LTR ERV1 -4 596 1 488 331 36 49 chr9 12702573 12702984 -105159643 + L1MC4a LINE L1 5487 5892 -1916 24 103 0 0 chr9 12703821 12703908 -105158719 + AT_rich Low_complexity Low_complexity 1 87 0 23 33 0 0 chr9 12704284 12704314 -105158313 + AT_rich Low_complexity Low_complexity 1 30 0 2165 57 4 0 chr9 12704869 12705134 -105157493 - AluY SINE Alu -11 300 35 903 271 48 38 chr9 12706388 12706761 -105155866 - LTR52 LTR ERVL -34 387 11 187 377 0 26 chr9 12706955 12707032 -105155595 + L2 LINE L2 3021 3095 -177 428 336 114 19 chr9 12707233 12707557 -105155070 + LTR33 LTR ERVL 111 465 -56 1622 205 130 20 chr9 12707909 12708362 -105154265 - MLT1D LTR MaLR -2 503 1 1549 189 36 6 chr9 12708933 12709267 -105153360 + L1MA5 LINE L1 5955 6298 -2 204 245 0 19 chr9 12709959 12710012 -105152615 + MIR SINE MIR 175 226 -36 21 0 0 0 chr9 12710062 12710083 -105152544 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 12710677 12710711 -105151916 + AT_rich Low_complexity Low_complexity 1 34 0 1916 125 4 7 chr9 12711027 12711308 -105151319 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr9 12711312 12711344 -105151283 + (GA)n Simple_repeat Simple_repeat 2 33 0 2336 138 102 4 chr9 12711588 12712033 -105150594 - L1MA5 LINE L1 -35 6265 5775 248 184 0 0 chr9 12712017 12712066 -105150561 + L1MA5 LINE L1 6248 6296 -4 * 30 45 0 0 chr9 12712066 12712110 -105150517 + AT_rich Low_complexity Low_complexity 1 44 0 225 211 42 11 chr9 12712356 12712451 -105150176 + (TA)n Simple_repeat Simple_repeat 1 98 0 219 188 0 0 chr9 12712471 12712519 -105150108 + (TA)n Simple_repeat Simple_repeat 2 49 0 23 54 0 0 chr9 12713093 12713130 -105149497 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr9 12714518 12714570 -105148057 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 12715406 12715435 -105147192 + AT_rich Low_complexity Low_complexity 1 29 0 2230 68 26 13 chr9 12716098 12716224 -105146403 + AluY SINE Alu 1 124 -187 243 0 0 0 chr9 12716224 12716251 -105146376 + (CA)n Simple_repeat Simple_repeat 2 28 0 2230 68 26 13 chr9 12716251 12716431 -105146196 + AluY SINE Alu 124 311 0 26 0 0 0 chr9 12716598 12716624 -105146003 + AT_rich Low_complexity Low_complexity 1 26 0 25 75 0 0 chr9 12717023 12717076 -105145551 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr9 12717198 12717227 -105145400 + AT_rich Low_complexity Low_complexity 1 29 0 962 168 10 41 chr9 12717633 12717829 -105144798 - L1MB1 LINE L1 -24 6144 5955 2790 202 32 58 chr9 12717832 12719325 -105143302 - L1MB1 LINE L1 -286 5882 4442 2608 239 36 61 chr9 12719321 12719390 -105143237 - L1MB1 LINE L1 -2751 3395 3326 * 2043 140 16 0 chr9 12719390 12719697 -105142930 - AluSx SINE Alu 0 312 1 2608 239 36 61 chr9 12719697 12720245 -105142382 - L1MB1 LINE L1 -2820 3326 2818 825 233 0 6 chr9 12720245 12720408 -105142219 - FAM SINE Alu -12 163 2 2608 239 36 61 chr9 12720408 12720959 -105141668 - L1MB1 LINE L1 -3328 2818 2255 1202 237 48 74 chr9 12720962 12721145 -105141482 + L1M4c LINE L1 1415 1601 -4783 213 39 0 0 chr9 12721145 12721171 -105141456 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1202 237 48 74 chr9 12721171 12721447 -105141180 + L1M4c LINE L1 1601 1862 -4522 235 253 44 33 chr9 12721614 12721705 -105140922 - L1MCb LINE L1 -4682 2063 1972 4176 233 58 46 chr9 12721706 12722620 -105140007 - L1MC3 LINE L1 -16 7769 6833 204 40 0 0 chr9 12722620 12722645 -105139982 + (TGG)n Simple_repeat Simple_repeat 1 25 0 4176 233 58 46 chr9 12722645 12723020 -105139607 - L1MC3 LINE L1 -952 6833 6464 358 207 24 24 chr9 12723028 12723110 -105139517 - L1MC3 LINE L1 -1402 6383 6302 1141 199 21 102 chr9 12723210 12723657 -105138970 - LTR34 LTR ERV1 -304 395 1 2635 199 55 25 chr9 12723695 12724459 -105138168 - LTR1B LTR ERV1 -1 784 1 2527 280 69 25 chr9 12724459 12724956 -105137671 - L1MCb LINE L1 -4851 1194 721 189 0 0 0 chr9 12724956 12724977 -105137650 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2527 280 69 25 chr9 12724977 12725905 -105136722 - L1MCb LINE L1 -5324 721 3 994 323 61 23 chr9 12725938 12726412 -105136215 - L1MCc LINE L1 -5102 1321 830 1174 283 46 12 chr9 12726716 12727147 -105135480 - L1MCc LINE L1 -5948 475 30 252 409 42 42 chr9 12727462 12727675 -105134952 - L2 LINE L2 -19 3253 3041 27 29 0 0 chr9 12728753 12728787 -105133840 + AT_rich Low_complexity Low_complexity 1 34 0 4202 281 88 35 chr9 12728857 12732426 -105130201 - L1MD2 LINE L1 0 6428 2435 987 139 0 0 chr9 12732426 12732606 -105130021 + (TA)n Simple_repeat Simple_repeat 1 180 0 4202 281 88 35 chr9 12732606 12735074 -105127553 - L1MD2 LINE L1 -3993 2435 100 185 224 17 0 chr9 12735430 12735488 -105127139 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 739 264 17 64 chr9 12735587 12735822 -105126805 - MER58A DNA MER1_type 0 224 1 24 0 0 0 chr9 12736717 12736741 -105125886 + AT_rich Low_complexity Low_complexity 1 24 0 270 381 116 28 chr9 12737096 12737458 -105125169 - L2 LINE L2 -411 2903 2510 203 406 0 0 chr9 12737590 12737659 -105124968 - MIR SINE MIR -188 74 6 25 95 0 0 chr9 12738645 12738719 -105123908 + AT_rich Low_complexity Low_complexity 1 74 0 240 35 0 0 chr9 12740327 12740356 -105122271 + (CA)n Simple_repeat Simple_repeat 1 29 0 205 200 0 22 chr9 12740593 12740638 -105121989 + CT-rich Low_complexity Low_complexity 3 46 0 1829 218 47 24 chr9 12740997 12741464 -105121163 + MLT1D LTR MaLR 28 505 0 239 304 94 22 chr9 12741971 12742195 -105120432 - HAL1 LINE L1 -295 2212 1973 416 325 25 15 chr9 12742296 12742496 -105120131 - HAL1 LINE L1 -749 1758 1557 21 36 0 0 chr9 12742526 12742554 -105120073 + AT_rich Low_complexity Low_complexity 1 28 0 254 306 75 48 chr9 12743335 12743482 -105119145 + L2 LINE L2 3122 3272 0 2557 163 2 0 chr9 12744127 12744550 -105118077 - THE1C-int LTR MaLR -1153 427 4 1400 193 76 25 chr9 12744553 12744910 -105117717 - THE1C LTR MaLR 0 375 1 1091 179 0 0 chr9 12745341 12745537 -105117090 + L1PBa LINE L1 3 198 -6665 * 9653 136 54 18 chr9 12745525 12747305 -105115322 + L1PBa LINE L1 617 2672 -4190 2296 82 7 0 chr9 12747305 12747598 -105115029 + AluY SINE Alu 1 295 -16 9653 136 54 18 chr9 12747598 12748346 -105114281 + L1PBa LINE L1 2672 3391 -3471 1402 245 50 6 chr9 12748652 12748991 -105113636 - MER21B LTR ERV1 -146 717 364 194 296 130 28 chr9 12748995 12749103 -105113524 - L2 LINE L2 -12 3260 3142 21 36 0 0 chr9 12751824 12751852 -105110775 + AT_rich Low_complexity Low_complexity 1 28 0 192 77 0 0 chr9 12752918 12752944 -105109683 + (GA)n Simple_repeat Simple_repeat 1 26 0 348 250 45 75 chr9 12753445 12753477 -105109150 - L1M4c LINE L1 -5077 1307 1276 306 73 0 0 chr9 12753477 12753518 -105109109 + (CA)n Simple_repeat Simple_repeat 1 41 0 348 250 45 75 chr9 12753518 12753685 -105108942 - L1M4c LINE L1 -5108 1276 1114 376 184 3 8 chr9 12753748 12753845 -105108782 - AluJ/FRAM SINE Alu -15 287 131 207 0 0 0 chr9 12754438 12754461 -105108166 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 184 327 40 10 chr9 12754935 12755036 -105107591 + MIR SINE MIR 48 151 -111 22 35 0 0 chr9 12755190 12755219 -105107408 + AT_rich Low_complexity Low_complexity 1 29 0 369 62 0 0 chr9 12755227 12755275 -105107352 + (TA)n Simple_repeat Simple_repeat 2 49 0 1646 166 0 4 chr9 12755347 12755606 -105107021 - AluSq SINE Alu -49 264 7 23 33 0 0 chr9 12755702 12755732 -105106895 + AT_rich Low_complexity Low_complexity 1 30 0 1908 172 34 0 chr9 12755855 12756181 -105106446 + MER1B DNA MER1_type 1 337 0 3583 161 25 3 chr9 12756610 12757281 -105105346 - L1MA4 LINE L1 -4 6296 5611 2060 161 18 19 chr9 12757281 12757711 -105104916 + L1M1 LINE L1 5221 5650 -650 193 335 97 65 chr9 12757839 12758024 -105104603 - MIR SINE MIR -68 194 4 584 313 152 36 chr9 12759904 12760371 -105102256 - L2 LINE L2 -528 2786 2266 273 29 0 0 chr9 12760373 12760407 -105102220 + (TG)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr9 12760782 12760808 -105101819 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr9 12760999 12761027 -105101600 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 12761210 12761232 -105101395 + AT_rich Low_complexity Low_complexity 1 22 0 1753 167 3 13 chr9 12761482 12761814 -105100813 - AluSx SINE Alu 0 312 2 2221 183 49 6 chr9 12762597 12763090 -105099537 - L1MA9 LINE L1 -2 6310 5797 219 69 0 0 chr9 12763095 12763124 -105099503 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 153 17 0 chr9 12763217 12763276 -105099351 + (TA)n Simple_repeat Simple_repeat 1 60 0 323 23 23 0 chr9 12763314 12763358 -105099269 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 980 180 0 0 chr9 12763386 12763553 -105099074 - L1MA9 LINE L1 -542 5749 5583 2658 209 42 12 chr9 12763555 12764226 -105098401 - L1MA9 LINE L1 -909 5237 4547 4473 165 22 26 chr9 12764226 12765225 -105097402 - L1PB4 LINE L1 -3 6153 5158 203 222 42 14 chr9 12766311 12766383 -105096244 + A-rich Low_complexity Low_complexity 5 78 0 257 0 30 0 chr9 12766715 12766748 -105095879 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2014 125 0 0 chr9 12766751 12767031 -105095596 - AluSg SINE Alu -30 280 1 5298 71 43 3 chr9 12767953 12768688 -105093939 - MER4E LTR ERV1 -1 765 1 24 32 0 0 chr9 12768726 12768757 -105093870 + AT_rich Low_complexity Low_complexity 1 31 0 578 190 35 81 chr9 12770218 12770392 -105092235 - LTR40b LTR ERVL -6 456 291 1431 302 42 30 chr9 12770394 12770921 -105091706 - REP3 LTR ERV -27 535 3 346 308 75 50 chr9 12770921 12771058 -105091569 - LTR40a LTR ERVL -172 347 207 1401 188 65 7 chr9 12771059 12771335 -105091292 + MSTB LTR MaLR 3 294 -132 1931 147 7 0 chr9 12771837 12772137 -105090490 + AluSx SINE Alu 11 312 0 731 256 31 0 chr9 12772588 12772811 -105089816 - L1M4 LINE L1 -2369 3777 3548 24 0 0 0 chr9 12772953 12772977 -105089650 + AT_rich Low_complexity Low_complexity 1 24 0 2289 91 3 0 chr9 12773471 12773768 -105088859 + AluSp SINE Alu 1 298 -15 810 237 0 29 chr9 12774457 12774630 -105087997 + AluJo SINE Alu 122 289 -23 427 206 153 24 chr9 12774646 12774816 -105087811 + LTR37A LTR ERV1 166 357 -69 704 270 49 85 chr9 12774835 12775386 -105087241 - L1M4 LINE L1 -2600 3546 3016 2054 139 6 30 chr9 12775386 12775718 -105086909 + THE1B LTR MaLR 1 324 -40 296 170 0 0 chr9 12775709 12775762 -105086865 - AluSg/x SINE Alu -116 184 132 * 805 158 0 0 chr9 12775762 12775895 -105086732 - AluJo/FLAM SINE Alu -169 133 1 990 191 0 62 chr9 12775895 12776120 -105086507 + THE1B LTR MaLR 154 364 0 396 291 7 20 chr9 12776123 12776271 -105086356 - L1M4 LINE L1 -3129 3017 2872 275 330 92 0 chr9 12776271 12776380 -105086247 + L2 LINE L2 1719 1837 -1477 1208 190 0 25 chr9 12776494 12776731 -105085896 - AluJb SINE Alu -16 296 66 313 285 29 81 chr9 12776847 12777409 -105085218 + L1MEd LINE L1 936 1357 -4774 21 0 0 0 chr9 12777835 12777856 -105084771 + AT_rich Low_complexity Low_complexity 1 21 0 230 109 16 47 chr9 12778071 12778135 -105084492 + (TA)n Simple_repeat Simple_repeat 1 62 0 965 342 18 10 chr9 12778891 12779286 -105083341 + LTR16A LTR ERVL 22 419 -31 386 271 60 26 chr9 12779734 12779885 -105082742 + L1MC4a LINE L1 5424 5579 -2229 1915 125 11 4 chr9 12779957 12780237 -105082390 - AluSx SINE Alu -30 282 1 975 74 5 58 chr9 12780237 12780427 -105082200 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 301 162 29 0 chr9 12780430 12780498 -105082129 + CT-rich Low_complexity Low_complexity 2 71 0 1349 201 56 26 chr9 12780515 12780696 -105081931 - AluJb SINE Alu 0 312 117 216 0 0 0 chr9 12780696 12780720 -105081907 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1349 201 56 26 chr9 12780720 12780841 -105081786 - AluJb SINE Alu -195 117 1 335 267 164 44 chr9 12780841 12781298 -105081329 + L1MC4a LINE L1 5844 6355 -1453 583 69 23 0 chr9 12781362 12781449 -105081178 - LTR19A LTR ERV1 -2 484 396 2038 172 79 0 chr9 12781459 12781900 -105080727 + L1MC2 LINE L1 5479 5954 -1831 1506 145 58 52 chr9 12781869 12782213 -105080414 + L1MB1 LINE L1 5819 6164 -4 * 394 313 10 10 chr9 12782474 12782682 -105079945 + L1MB1 LINE L1 5938 6145 -23 332 264 42 60 chr9 12782721 12782788 -105079839 + L1MC2 LINE L1 5971 6038 -306 10427 50 1 0 chr9 12782788 12784817 -105077810 - L1PA5 LINE L1 -15 6139 4081 332 264 42 60 chr9 12784817 12784916 -105077711 + L1MC2 LINE L1 6038 6134 -210 4106 213 70 19 chr9 12784953 12786076 -105076551 + L1MC3 LINE L1 6597 7777 -8 636 238 0 0 chr9 12786090 12786212 -105076415 + L1MC4 LINE L1 6712 6833 -1209 231 284 58 82 chr9 12786373 12786581 -105076046 + L1MC4 LINE L1 6903 7105 -937 250 250 135 10 chr9 12786866 12786962 -105075665 + MIR SINE MIR 154 261 -1 2493 91 17 0 chr9 12787217 12787568 -105075059 - L1PA10 LINE L1 0 6168 5812 180 172 0 0 chr9 12787891 12787920 -105074707 + MER5A DNA MER1_type 129 157 -32 408 301 28 23 chr9 12788652 12788828 -105073799 + MER5B DNA MER1_type 1 177 -1 1476 255 54 22 chr9 12789373 12789820 -105072807 - MLT1H1 LTR MaLR -3 552 92 1951 199 41 21 chr9 12789824 12790260 -105072367 + MER34 LTR ERV1 1 445 -97 2717 138 5 13 chr9 12790277 12790782 -105071845 - L1P4 LINE L1 -475 6394 5893 282 115 0 0 chr9 12790785 12790837 -105071790 + (T)n Simple_repeat Simple_repeat 1 52 0 308 351 25 25 chr9 12790880 12791119 -105071508 - L1 LINE L1 -1022 5827 5589 787 310 7 19 chr9 12791510 12791929 -105070698 - L1P4 LINE L1 -486 6383 5970 278 23 0 68 chr9 12792011 12792055 -105070572 + (T)n Simple_repeat Simple_repeat 1 41 0 8040 251 62 26 chr9 12792055 12792844 -105069783 - L1P4 LINE L1 -964 5885 5126 362 21 21 0 chr9 12792844 12792891 -105069736 + (TG)n Simple_repeat Simple_repeat 1 48 0 8040 251 62 26 chr9 12792891 12793093 -105069534 - L1P4 LINE L1 -1723 5126 4933 2361 61 3 3 chr9 12793093 12793403 -105069224 + AluY SINE Alu 1 310 -1 8040 251 62 26 chr9 12793403 12795042 -105067585 - L1P4 LINE L1 -1916 4933 3160 2998 145 26 33 chr9 12795045 12795626 -105067001 - L1P4 LINE L1 -3952 2897 2321 10541 245 38 28 chr9 12795727 12796001 -105066626 - L1P4 LINE L1 -1005 5844 5574 180 0 0 0 chr9 12796001 12796021 -105066606 + (TTG)n Simple_repeat Simple_repeat 1 20 0 10541 245 38 28 chr9 12796021 12800127 -105062500 - L1P4 LINE L1 -1275 5574 1336 734 317 49 7 chr9 12800175 12800459 -105062168 - L1P4 LINE L1 -6553 296 1 * 1232 195 47 12 chr9 12800458 12800796 -105061831 - L1 LINE L1 -1584 4562 4213 * 4037 106 7 5 chr9 12800782 12801360 -105061267 + L1P LINE L1 3884 4462 -1684 4167 155 70 36 chr9 12802381 12803246 -105059381 + MER4D LTR ERV1 1 895 -8 500 165 21 10 chr9 12803260 12803357 -105059270 + MER4A LTR ERV1 1 98 -566 1761 170 3 22 chr9 12803357 12803709 -105058918 + MER4A LTR ERV1 261 664 0 2871 105 165 10 chr9 12803711 12804037 -105058590 + MER4A-int LTR ERV1 1 275 -6323 221 0 0 33 chr9 12804037 12804067 -105058560 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2871 105 165 10 chr9 12804067 12804290 -105058337 + MER4A-int LTR ERV1 275 686 -5912 375 23 0 0 chr9 12804361 12804405 -105058222 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 604 256 50 5 chr9 12804471 12804729 -105057898 + MER4A-int LTR ERV1 1861 2161 -4170 3885 150 14 23 chr9 12804806 12805446 -105057181 + MER4A-int LTR ERV1 198 831 -5927 1335 137 29 72 chr9 12805477 12805754 -105056873 + MER4A-int LTR ERV1 924 1188 -5570 4006 104 60 8 chr9 12805765 12806469 -105056158 + MER4A-int LTR ERV1 1756 2495 -4103 1340 158 67 8 chr9 12806469 12806709 -105055918 - LTR8 LTR ERV1 -434 257 4 2535 161 74 21 chr9 12806711 12807435 -105055192 + MER4A-int LTR ERV1 2736 4140 -2536 324 169 34 0 chr9 12807432 12807491 -105055136 + MER4A-int LTR ERV1 3626 3686 -2912 * 6131 111 59 15 chr9 12807485 12808530 -105054097 + MER4A-int LTR ERV1 3837 4927 -1671 9555 122 51 18 chr9 12808630 12810285 -105052342 + MER4A-int LTR ERV1 4876 6584 -14 519 134 31 21 chr9 12810304 12810401 -105052226 + MER4A LTR ERV1 1 98 -566 1757 160 0 23 chr9 12810452 12810752 -105051875 + MER4A LTR ERV1 372 664 0 285 322 62 17 chr9 12810859 12811036 -105051591 + MIR SINE MIR 78 262 0 1195 220 68 153 chr9 12811192 12811414 -105051213 - L1MC4 LINE L1 -959 7083 6844 419 102 0 159 chr9 12811414 12811502 -105051125 + MER84 LTR ERVI 1 74 -433 2793 175 22 0 chr9 12811502 12811993 -105050634 + MER84 LTR ERV1 2 503 -4 1195 220 68 153 chr9 12811993 12812363 -105050264 - L1MC4 LINE L1 -1196 6846 6461 1458 120 9 0 chr9 12812756 12812989 -105049638 - L1MA1 LINE L1 0 6302 6068 23 0 0 0 chr9 12813000 12813023 -105049604 + AT_rich Low_complexity Low_complexity 1 23 0 956 154 0 70 chr9 12814321 12814535 -105048092 + L1MA8 LINE L1 6085 6283 -8 336 155 99 14 chr9 12814566 12814637 -105047990 + L1ME2 LINE L1 5995 6071 -93 1500 209 118 112 chr9 12814730 12815477 -105047150 - LTR1B LTR ERV1 -75 751 1 25 0 0 0 chr9 12815627 12815652 -105046975 + AT_rich Low_complexity Low_complexity 1 25 0 1676 166 18 0 chr9 12815787 12816089 -105046538 - AluJb SINE Alu 0 307 1 763 219 0 114 chr9 12816838 12817066 -105045561 - MLT1A1 LTR MaLR 0 365 164 645 177 16 16 chr9 12817116 12817240 -105045387 + MLT1A1 LTR MaLR 230 353 -12 1949 181 36 32 chr9 12817685 12818234 -105044393 + MLT2A2 LTR ERVL 1 554 0 336 329 82 37 chr9 12818295 12818538 -105044089 - MIR SINE MIR -2 260 7 380 353 27 0 chr9 12818754 12818904 -105043723 - MIR SINE MIR -17 245 92 278 254 42 14 chr9 12819247 12819318 -105043309 + MIR SINE MIR 35 107 -155 240 177 32 65 chr9 12819358 12819420 -105043207 + MIR SINE MIR 201 260 -2 * 267 202 95 12 chr9 12819413 12819497 -105043130 + MIR SINE MIR 99 189 -73 496 188 0 0 chr9 12819518 12819598 -105043029 + Charlie5 DNA MER1_type 10 89 -2523 229 250 0 0 chr9 12820402 12820450 -105042177 + MLT1K LTR MaLR 202 249 -339 24 0 0 0 chr9 12822225 12822249 -105040378 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 12822719 12822748 -105039879 + AT_rich Low_complexity Low_complexity 1 29 0 821 221 16 112 chr9 12823183 12823432 -105039195 + MER8 DNA MER2_type 15 239 0 403 330 167 19 chr9 12823906 12824482 -105038145 - L1M4 LINE L1 -2263 3883 3223 222 37 0 0 chr9 12824545 12824572 -105038055 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 856 236 67 18 chr9 12824857 12825178 -105037449 + MSTD LTR MaLR 1 396 0 189 318 101 23 chr9 12825467 12825596 -105037031 - MIR SINE MIR -110 152 14 180 288 29 93 chr9 12825636 12825775 -105036852 + L2 LINE L2 3160 3289 -24 321 26 0 0 chr9 12826921 12826959 -105035668 + (TTA)n Simple_repeat Simple_repeat 2 39 0 375 43 0 0 chr9 12826963 12827009 -105035618 - L1PA11 LINE L1 -41 6133 6088 22 0 0 0 chr9 12827758 12827780 -105034847 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr9 12829348 12829378 -105033249 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 12830516 12830544 -105032083 + AT_rich Low_complexity Low_complexity 1 28 0 2364 91 0 0 chr9 12830922 12831229 -105031398 + AluY SINE Alu 1 307 -4 2297 167 10 61 chr9 12832074 12832582 -105030045 - MER66B LTR ERV1 0 486 5 12482 244 37 34 chr9 12832585 12833082 -105029545 - MER66B-int LTR ERV1 0 6676 6182 2377 75 3 0 chr9 12833082 12833388 -105029239 - AluY SINE Alu -4 307 1 12482 244 37 34 chr9 12833388 12839940 -105022687 - MER66B-int LTR ERV1 -494 6182 1210 539 297 13 19 chr9 12840031 12840186 -105022441 - MER66B-int LTR ERV1 -3574 3102 2949 2920 228 79 27 chr9 12840281 12841057 -105021570 - MER66B-int LTR ERV1 -5571 1105 290 1354 163 105 25 chr9 12841060 12841337 -105021290 + THE1C LTR MaLR 77 375 0 2056 200 8 64 chr9 12841523 12842008 -105020619 - MER66B LTR ERV1 -4 482 25 345 294 49 14 chr9 12842418 12842561 -105020066 + MIR SINE MIR 101 248 -14 35 63 0 0 chr9 12842571 12842634 -105019993 + AT_rich Low_complexity Low_complexity 1 63 0 28 29 0 0 chr9 12842863 12842898 -105019729 + AT_rich Low_complexity Low_complexity 1 35 0 250 59 78 0 chr9 12842972 12843023 -105019604 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2268 228 51 2 chr9 12844033 12844581 -105018046 - L1MD3 LINE L1 -20 7975 7401 354 289 0 0 chr9 12844584 12844667 -105017960 - MLT1F1 LTR MaLR -448 119 37 34 72 0 0 chr9 12844800 12844869 -105017758 + AT_rich Low_complexity Low_complexity 1 69 0 263 323 234 6 chr9 12844957 12845115 -105017512 + MIR SINE MIR 51 244 -18 225 83 0 0 chr9 12845411 12845447 -105017180 + (CATAA)n Simple_repeat Simple_repeat 1 36 0 198 0 0 0 chr9 12846525 12846547 -105016080 + (A)n Simple_repeat Simple_repeat 1 22 0 1937 132 43 35 chr9 12847357 12847729 -105014898 - THE1C LTR MaLR 0 375 1 207 0 0 0 chr9 12847895 12847918 -105014709 + (TA)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr9 12847917 12847940 -105014687 + (GA)n Simple_repeat Simple_repeat 2 24 0 35 54 0 0 chr9 12848388 12848444 -105014183 + AT_rich Low_complexity Low_complexity 1 56 0 213 414 0 0 chr9 12849354 12849465 -105013162 + MIR SINE MIR 34 144 -64 197 278 14 69 chr9 12849661 12849733 -105012894 - L2 LINE L2 -5 3267 3200 799 200 78 6 chr9 12852881 12853061 -105009566 - MLT1A1 LTR MaLR 0 365 173 208 389 14 22 chr9 12853197 12853336 -105009291 - MER5A DNA MER1_type -1 188 51 327 296 72 32 chr9 12853799 12853924 -105008703 - MIR SINE MIR -67 195 66 386 282 8 24 chr9 12854240 12854364 -105008263 + (CATA)n Simple_repeat Simple_repeat 2 123 0 365 293 57 21 chr9 12856041 12856181 -105006446 + LTR33 LTR ERVL 126 270 -251 30 45 0 0 chr9 12856926 12856970 -105005657 + AT_rich Low_complexity Low_complexity 1 44 0 2371 180 101 41 chr9 12856990 12857697 -105004930 + LTR28 LTR ERV1 1 634 -2 406 296 113 0 chr9 12858163 12858305 -105004322 + MIR SINE MIR 3 160 -102 245 164 36 0 chr9 12858535 12858590 -105004037 + (TA)n Simple_repeat Simple_repeat 2 58 0 2252 90 14 0 chr9 12858636 12858926 -105003701 - AluY SINE Alu -17 294 1 254 287 28 46 chr9 12859143 12859251 -105003376 + MIR SINE MIR 56 161 -101 390 309 73 36 chr9 12859271 12859491 -105003136 - L2 LINE L2 0 3313 3086 24 53 0 0 chr9 12860319 12860357 -105002270 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 12860841 12860862 -105001765 + AT_rich Low_complexity Low_complexity 1 21 0 216 296 102 11 chr9 12861263 12861351 -105001276 - MIR SINE MIR -87 175 80 221 0 0 33 chr9 12861995 12862025 -105000602 + (TATAA)n Simple_repeat Simple_repeat 5 33 0 21 36 0 0 chr9 12862027 12862055 -105000572 + AT_rich Low_complexity Low_complexity 1 28 0 424 34 0 17 chr9 12862980 12863039 -104999588 - L1PA3 LINE L1 -5 6150 6093 21 57 0 0 chr9 12863188 12863223 -104999404 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 12863527 12863552 -104999075 + AT_rich Low_complexity Low_complexity 1 25 0 185 350 70 40 chr9 12863625 12863825 -104998802 + MIR SINE MIR 2 207 -55 22 0 0 0 chr9 12865044 12865066 -104997561 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 12865089 12865117 -104997510 + AT_rich Low_complexity Low_complexity 1 28 0 344 172 83 0 chr9 12865176 12865333 -104997294 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 509 198 11 88 chr9 12866684 12866860 -104995767 + MER66A LTR ERV1 97 303 -251 180 0 0 0 chr9 12867863 12867883 -104994744 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 513 370 35 0 chr9 12868369 12868599 -104994028 - ERVL LTR ERVL -426 5338 5101 1950 207 20 47 chr9 12868732 12869176 -104993451 - MSTB1 LTR MaLR 0 432 1 483 287 57 24 chr9 12869345 12869679 -104992948 + L1ME LINE L1 3860 4204 -1942 212 224 15 0 chr9 12869729 12869796 -104992831 + GA-rich Low_complexity Low_complexity 3 70 0 280 355 79 14 chr9 12870161 12870375 -104992252 - LTR16C LTR ERVL 0 491 264 225 282 24 0 chr9 12870755 12870840 -104991787 + L1ME LINE L1 4757 4843 -1303 250 104 21 0 chr9 12871328 12871376 -104991251 + L1MD2 LINE L1 6309 6357 -2 242 319 9 0 chr9 12871382 12871495 -104991132 + L1ME LINE L1 5333 5446 -718 2605 30 3 0 chr9 12871497 12871799 -104990828 + AluY SINE Alu 1 303 -8 3207 130 4 103 chr9 12872723 12873400 -104989227 - MER4B LTR ERV1 0 610 1 1671 202 124 5 chr9 12873873 12874284 -104988343 - MLT1C LTR MaLR -7 460 1 20738 47 0 5 chr9 12875042 12878423 -104984204 - L1PA5 LINE L1 -6 6148 2776 822 103 0 0 chr9 12878423 12878539 -104984088 + L1P LINE L1 1550 1665 -4481 341 191 71 12 chr9 12879734 12879818 -104982809 - MIR SINE MIR -34 228 140 507 217 89 56 chr9 12879843 12880015 -104982612 + L1ME LINE L1 4776 4952 -1194 969 252 38 33 chr9 12880032 12880596 -104982031 + L1ME LINE L1 5029 5586 -580 684 106 9 0 chr9 12880662 12880775 -104981852 + L1MC3 LINE L1 6926 7039 -746 442 202 10 10 chr9 12880791 12880895 -104981732 + L1MA6 LINE L1 5989 6092 -208 1804 120 94 7 chr9 12880897 12881196 -104981431 - THE1A LTR MaLR 0 355 31 1044 93 35 6 chr9 12881261 12881433 -104981194 + L1MA6 LINE L1 6124 6300 0 415 187 0 44 chr9 12881450 12881541 -104981086 + MLT1E2 LTR MaLR 87 173 -453 231 287 124 0 chr9 12881739 12881941 -104980686 - L1M4 LINE L1 -3761 2385 2159 2305 65 3 3 chr9 12881972 12882264 -104980363 - AluY SINE Alu -19 292 1 1282 253 110 22 chr9 12882385 12883125 -104979502 - L1ME2 LINE L1 -19 6145 5325 2117 121 0 3 chr9 12883368 12883675 -104978952 - AluSg SINE Alu -4 306 1 264 408 22 6 chr9 12884051 12884230 -104978397 + LTR16C LTR ERVL 131 312 -179 505 42 0 0 chr9 12884247 12884318 -104978309 - L1PB1 LINE L1 -2 6149 6079 1179 142 0 0 chr9 12884320 12884503 -104978124 - L1PB1 LINE L1 -173 5978 5796 2190 55 0 0 chr9 12884513 12884786 -104977841 + L1PA8 LINE L1 5900 6172 0 2058 120 20 11 chr9 12884789 12885013 -104977614 - L1PB1 LINE L1 -559 5592 5365 2801 50 43 25 chr9 12885013 12885409 -104977218 - L1PA5 LINE L1 -13 6141 5739 2058 120 20 11 chr9 12885409 12885576 -104977051 - L1PB1 LINE L1 -786 5365 5201 21 0 0 0 chr9 12886212 12886233 -104976394 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 12886717 12886766 -104975861 + AT_rich Low_complexity Low_complexity 1 49 0 1372 208 13 35 chr9 12886881 12887194 -104975433 + AluJo SINE Alu 1 306 -6 429 109 0 0 chr9 12889007 12889071 -104973556 + (TA)n Simple_repeat Simple_repeat 1 64 0 321 26 0 0 chr9 12889644 12889682 -104972945 + (TA)n Simple_repeat Simple_repeat 1 38 0 383 222 51 51 chr9 12889748 12889865 -104972762 - LTR16C LTR ERVL -59 432 316 2123 178 28 30 chr9 12890100 12890533 -104972094 - MSTB1 LTR MaLR 0 432 1 289 300 0 0 chr9 12891244 12891344 -104971283 + L1M4 LINE L1 4230 4329 -1817 33 43 0 0 chr9 12891356 12891403 -104971224 + AT_rich Low_complexity Low_complexity 1 47 0 251 234 0 16 chr9 12891495 12891559 -104971068 + L1ME3A LINE L1 6073 6135 -35 24 0 0 0 chr9 12891570 12891594 -104971033 + AT_rich Low_complexity Low_complexity 1 24 0 255 301 0 0 chr9 12892498 12892581 -104970046 - MLT1D LTR MaLR -9 496 414 520 206 0 66 chr9 12892582 12892718 -104969909 - MLT1C LTR MaLR -330 137 11 790 294 97 98 chr9 12892815 12894001 -104968626 + L2 LINE L2 2084 3253 -60 21 0 0 0 chr9 12894120 12894141 -104968486 + AT_rich Low_complexity Low_complexity 1 21 0 531 309 25 6 chr9 12894249 12894411 -104968216 + MIR SINE MIR 48 212 -50 276 284 11 11 chr9 12895128 12895223 -104967404 + GA-rich Low_complexity Low_complexity 2 96 0 342 0 0 0 chr9 12896005 12896043 -104966584 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 354 45 0 0 chr9 12896042 12896086 -104966541 + (GA)n Simple_repeat Simple_repeat 1 44 0 1697 180 136 18 chr9 12896739 12897122 -104965505 - MSTA LTR MaLR 0 428 1 6880 151 166 39 chr9 12897122 12898522 -104964105 - MSTA-int LTR MaLR 0 1580 3 1701 177 126 26 chr9 12898524 12898913 -104963714 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr9 12898958 12898981 -104963646 + AT_rich Low_complexity Low_complexity 1 23 0 300 247 180 34 chr9 12899036 12899214 -104963413 - MLT1L LTR MaLR -7 608 405 232 271 0 0 chr9 12899752 12899811 -104962816 + MLT1I LTR MaLR 351 409 0 3028 151 20 2 chr9 12899830 12900333 -104962294 - MER41E LTR ERV1 0 512 1 1605 261 5 19 chr9 12900907 12901317 -104961310 - MER92A LTR ERV1 -8 404 1 1513 214 14 82 chr9 12902857 12903272 -104959355 - MLT1B LTR MaLR -3 387 1 4037 39 0 0 chr9 12903744 12904234 -104958393 - L1PA4 LINE L1 -1109 5037 4548 3298 34 4 0 chr9 12904233 12905195 -104957432 + L1PA4 LINE L1 5037 6154 -1 * 389 320 81 12 chr9 12905329 12905501 -104957126 - MER92A-int LTR ERV1 -4002 934 751 231 36 0 0 chr9 12905648 12905676 -104956951 + (T)n Simple_repeat Simple_repeat 1 28 0 397 297 67 68 chr9 12905775 12906397 -104956230 - MER92A-int LTR ERV1 -3309 4948 3237 1573 93 12 57 chr9 12906596 12906843 -104955784 + AluSp SINE Alu 64 299 -14 258 410 18 6 chr9 12907187 12907353 -104955274 - MER92A-int LTR ERV1 -4095 2706 2539 264 298 60 66 chr9 12908139 12908441 -104954186 - MER92A-int LTR ERV1 -4439 497 198 1161 231 98 34 chr9 12908711 12909097 -104953530 - MER92A LTR ERV1 0 412 2 24 0 0 0 chr9 12909477 12909501 -104953126 + AT_rich Low_complexity Low_complexity 1 24 0 2084 97 16 10 chr9 12909591 12909899 -104952728 - AluY SINE Alu -1 310 1 46 33 0 0 chr9 12910283 12910343 -104952284 + AT_rich Low_complexity Low_complexity 1 60 0 2488 38 3 0 chr9 12911321 12911611 -104951016 - AluY SINE Alu -20 291 1 1123 47 0 0 chr9 12911826 12911955 -104950672 - AluY SINE Alu -182 129 1 1919 107 17 20 chr9 12912132 12912432 -104950195 + AluSg1 SINE Alu 1 299 -10 203 208 19 0 chr9 12912527 12912580 -104950047 + (TA)n Simple_repeat Simple_repeat 2 55 0 24 0 0 0 chr9 12912749 12912773 -104949854 + AT_rich Low_complexity Low_complexity 1 24 0 814 238 0 0 chr9 12912773 12912945 -104949682 - FAM SINE Alu -3 172 1 915 153 17 17 chr9 12913468 12913645 -104948982 - L1MC1 LINE L1 -1 6332 6156 1649 177 13 13 chr9 12913951 12914251 -104948376 + AluJo SINE Alu 1 300 -12 548 336 6 6 chr9 12914273 12914466 -104948161 + MIR SINE MIR 33 223 -39 266 87 22 0 chr9 12915481 12915527 -104947100 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 1696 230 43 22 chr9 12916479 12916982 -104945645 + L1MD2 LINE L1 5551 6076 -88 692 277 25 22 chr9 12916951 12917225 -104945402 + L1MD2 LINE L1 6070 6344 -15 * 432 0 0 0 chr9 12917877 12917925 -104944702 + (TG)n Simple_repeat Simple_repeat 1 48 0 227 301 169 0 chr9 12918155 12918238 -104944389 + MIR3 SINE MIR 95 191 -17 413 315 73 69 chr9 12918263 12918466 -104944161 + MIR SINE MIR 1 209 -53 2061 118 0 3 chr9 12918466 12918781 -104943846 + AluSx SINE Alu 1 314 0 413 315 73 69 chr9 12918781 12918835 -104943792 + MIR SINE MIR 209 261 -1 835 281 70 23 chr9 12919154 12919456 -104943171 - L2 LINE L2 -1 3312 2997 1179 204 127 8 chr9 12919829 12920191 -104942436 + L1PB1 LINE L1 4232 4636 -1510 677 100 46 15 chr9 12920421 12920551 -104942076 - L1M LINE L1 -872 5428 5295 * 5142 226 39 11 chr9 12920545 12922552 -104940075 - L1 LINE L1 -3488 3679 1618 3654 247 67 60 chr9 12922585 12923860 -104938767 - L1 LINE L1 -6023 1145 4 983 243 86 86 chr9 12923864 12924308 -104938319 + L1MD2 LINE L1 5698 6141 -218 1234 196 0 15 chr9 12924645 12924910 -104937717 - L1PB1 LINE L1 -1341 4805 4545 * 1623 150 15 1 chr9 12924906 12926156 -104936471 + L1PB1 LINE L1 4792 6151 0 24 32 0 0 chr9 12926156 12926187 -104936440 + AT_rich Low_complexity Low_complexity 1 31 0 2155 105 0 26 chr9 12926224 12926537 -104936090 - AluSg SINE Alu 0 310 6 21 36 0 0 chr9 12926718 12926746 -104935881 + AT_rich Low_complexity Low_complexity 1 28 0 250 333 0 43 chr9 12927253 12927346 -104935281 + MIR SINE MIR 49 137 -125 1010 252 119 7 chr9 12927434 12927736 -104934891 + L2 LINE L2 2454 2789 -525 581 175 42 121 chr9 12927784 12927950 -104934677 - MER2 DNA MER2_type -5 340 188 337 260 75 55 chr9 12928440 12928586 -104934041 + MIR SINE MIR 66 214 -48 235 374 40 52 chr9 12929996 12930170 -104932457 - L2 LINE L2 -968 2346 2175 22 0 0 0 chr9 12932140 12932162 -104930465 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 12933658 12933679 -104928948 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 12933913 12933941 -104928686 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 12934027 12934048 -104928579 + AT_rich Low_complexity Low_complexity 1 21 0 1178 308 108 31 chr9 12934697 12935189 -104927438 + L2 LINE L2 2091 2646 -668 2314 88 3 3 chr9 12935189 12935497 -104927130 - AluSc SINE Alu -1 308 1 1178 308 108 31 chr9 12935497 12935651 -104926976 + L2 LINE L2 2646 2787 -527 901 247 55 105 chr9 12935652 12936142 -104926485 + MLT1G1 LTR MaLR 1 452 -115 589 312 18 52 chr9 12936222 12936504 -104926123 + L2 LINE L2 2777 3050 -263 2120 135 0 0 chr9 12936504 12936816 -104925811 + AluSx SINE Alu 1 312 0 390 129 0 14 chr9 12936931 12937001 -104925626 - L1MA9 LINE L1 -5 6307 6239 1151 120 17 0 chr9 12937002 12937177 -104925450 - L1MA9 LINE L1 -149 6163 5986 391 244 109 67 chr9 12937178 12937371 -104925256 + L2 LINE L2 3113 3313 0 278 215 13 0 chr9 12937384 12937463 -104925164 + (TGGA)n Simple_repeat Simple_repeat 2 81 0 207 0 0 0 chr9 12938337 12938360 -104924267 + (TG)n Simple_repeat Simple_repeat 2 24 0 556 270 152 5 chr9 12938715 12938919 -104923708 + MIR SINE MIR 1 234 -28 254 336 66 69 chr9 12940103 12940466 -104922161 - MLT1J LTR MaLR -145 366 5 222 118 0 0 chr9 12940650 12940684 -104921943 + (CA)n Simple_repeat Simple_repeat 2 35 0 211 217 0 22 chr9 12941735 12941781 -104920846 + GA-rich Low_complexity Low_complexity 4 48 0 22 70 0 0 chr9 12941890 12941933 -104920694 + AT_rich Low_complexity Low_complexity 1 43 0 275 284 153 34 chr9 12942039 12942080 -104920547 - MIR SINE MIR -3 259 224 884 206 44 136 chr9 12942080 12942492 -104920135 - MLT1A2 LTR MaLR 0 374 1 275 284 153 34 chr9 12942492 12942626 -104920001 - MIR SINE MIR -38 224 63 237 336 67 51 chr9 12942693 12943143 -104919484 + HAL1b LINE L1 231 687 -661 288 77 0 0 chr9 12943327 12943366 -104919261 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 876 214 74 72 chr9 12944524 12944996 -104917631 + MER92C LTR ERV1 1 552 -2 2210 92 7 3 chr9 12945966 12946271 -104916356 + AluY SINE Alu 1 306 -5 2154 135 28 0 chr9 12947060 12947386 -104915241 - MER1B DNA MER1_type -1 336 2 1741 251 101 70 chr9 12947621 12947991 -104914636 + LTR49-int LTR ERV1 738 1095 -3841 1718 216 15 48 chr9 12947991 12948449 -104914178 - LTR47B LTR ERVL 0 443 1 1741 251 101 70 chr9 12948449 12949832 -104912795 + LTR49-int LTR ERV1 1095 2611 -2325 803 249 42 54 chr9 12949820 12950154 -104912473 + LTR49-int LTR ERV1 2724 3053 -1883 * 1268 268 80 14 chr9 12950930 12951035 -104911592 + LTR49-int LTR ERV1 3337 3434 -1502 189 0 0 0 chr9 12951035 12951056 -104911571 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 1268 268 80 14 chr9 12951056 12951386 -104911241 + LTR49-int LTR ERV1 3434 3801 -1135 443 257 0 9 chr9 12951423 12951536 -104911091 + MER67D LTR ERV1 1 112 -402 351 253 273 5 chr9 12951537 12951683 -104910944 + MER39 LTR ERV1 1 133 -574 422 295 7 14 chr9 12951693 12951832 -104910795 + LTR29 LTR ERV1 233 370 -252 2063 199 101 81 chr9 12951832 12952562 -104910065 + LTR49-int LTR ERV1 472 1216 -5115 264 303 0 26 chr9 12952562 12952638 -104909989 + tRNA-Glu-GAG tRNA tRNA 2 75 0 1551 63 14 5 chr9 12952860 12953081 -104909546 + L1PA13 LINE L1 5940 6162 -1 1874 154 146 11 chr9 12954605 12954982 -104907645 + MSTA LTR MaLR 1 428 0 201 94 0 0 chr9 12955122 12955154 -104907473 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 25 0 0 0 chr9 12955544 12955569 -104907058 + AT_rich Low_complexity Low_complexity 1 25 0 1646 187 48 3 chr9 12955698 12956072 -104906555 - L1 LINE L1 -2652 3494 3104 1713 214 96 43 chr9 12956169 12956636 -104905991 - MER89 LTR ERV1 0 559 68 1438 212 70 47 chr9 12956666 12957210 -104905417 + MER52A LTR ERV1 1 729 -549 * 1460 120 20 83 chr9 12957198 12957499 -104905128 + MER52C LTR ERV1 997 1278 0 365 109 0 0 chr9 12957501 12957556 -104905071 - MER89 LTR ERV1 -504 55 1 238 281 70 8 chr9 12957785 12957913 -104904714 + MER67C LTR ERV1 37 172 -538 446 251 53 16 chr9 12957999 12958186 -104904441 + MER67C LTR ERV1 498 691 -19 402 271 54 54 chr9 12958197 12958455 -104904172 - MER34B LTR ERV1 -4 561 304 245 29 29 0 chr9 12959150 12959184 -104903443 + (TTC)n Simple_repeat Simple_repeat 3 37 0 1673 204 7 3 chr9 12959193 12959502 -104903125 - AluJo SINE Alu -2 310 1 1047 259 58 10 chr9 12959593 12960050 -104902577 + MER92B LTR ERV1 1 552 -2 26 64 0 0 chr9 12960446 12960493 -104902134 + AT_rich Low_complexity Low_complexity 1 47 0 349 337 26 26 chr9 12960910 12961103 -104901524 + L1MEc LINE L1 1769 1961 -4435 375 283 31 102 chr9 12961913 12962139 -104900488 + HAL1 LINE L1 1360 1569 -938 213 39 0 0 chr9 12963459 12963485 -104899142 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 4943 172 45 30 chr9 12963485 12963917 -104898710 - L1MC1 LINE L1 -10 6323 5899 2833 118 13 45 chr9 12963917 12964385 -104898242 + MLT2A2 LTR ERVL 1 453 0 4943 172 45 30 chr9 12964385 12964967 -104897660 - L1MC1 LINE L1 -434 5899 5293 951 210 0 5 chr9 12964971 12965157 -104897470 - AluJb SINE Alu 0 312 128 2579 241 41 4 chr9 12965158 12965917 -104896710 - L1MC1 LINE L1 -820 5326 4540 625 82 49 8 chr9 12966493 12966615 -104896012 + CT-rich Low_complexity Low_complexity 2 128 0 978 199 11 0 chr9 12966645 12966821 -104895806 - U2 snRNA snRNA -10 178 1 330 306 24 47 chr9 12966853 12967023 -104895604 + MLT1J2 LTR MaLR 252 417 -33 188 0 74 0 chr9 12967553 12967580 -104895047 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 547 313 110 19 chr9 12968129 12968620 -104894007 + L1M4 LINE L1 947 1533 -4902 447 341 29 6 chr9 12969282 12969455 -104893172 - LTR16A1 LTR ERVL -55 402 226 189 0 0 0 chr9 12969478 12969499 -104893128 + (TTTTTA)n Simple_repeat Simple_repeat 3 23 0 10216 30 0 0 chr9 12969509 12971501 -104891126 - L1PA4 LINE L1 -4 6151 4168 21 0 0 0 chr9 12972876 12972897 -104889730 + AT_rich Low_complexity Low_complexity 1 21 0 1562 184 63 25 chr9 12973152 12973516 -104889111 - MLT1C LTR MaLR -1 466 89 39 60 0 0 chr9 12973660 12973727 -104888900 + AT_rich Low_complexity Low_complexity 1 67 0 1241 50 25 0 chr9 12973769 12973928 -104888699 + L1PA4 LINE L1 5991 6153 -2 519 265 53 35 chr9 12974416 12974586 -104888041 + MIR SINE MIR 30 202 -60 439 302 57 12 chr9 12974594 12975052 -104887575 + L1M4 LINE L1 3025 3495 -2887 856 180 85 0 chr9 12975143 12975332 -104887295 + L1MA4 LINE L1 6085 6289 -11 21 0 0 0 chr9 12975553 12975574 -104887053 + AT_rich Low_complexity Low_complexity 1 21 0 25760 159 12 16 chr9 12975725 12982200 -104880427 - L1PA8 LINE L1 0 6487 14 378 308 65 33 chr9 12982451 12982665 -104879962 + L1M4 LINE L1 4388 4608 -1774 958 205 51 77 chr9 12982770 12983116 -104879511 - L1MB7 LINE L1 0 6178 5856 441 234 81 8 chr9 12983104 12983228 -104879399 + L1M4 LINE L1 5732 5864 -550 * 226 354 13 0 chr9 12983445 12983524 -104879103 - L2 LINE L2 0 3313 3234 30 59 0 0 chr9 12983561 12983612 -104879015 + AT_rich Low_complexity Low_complexity 1 51 0 444 366 33 36 chr9 12983637 12983970 -104878657 - L2 LINE L2 -157 3156 2825 254 313 21 0 chr9 12983980 12984076 -104878551 - L2 LINE L2 -1243 2071 1974 236 340 53 44 chr9 12984172 12984378 -104878249 - L2 LINE L2 -1368 1946 1739 2310 97 0 10 chr9 12986578 12986887 -104875740 + AluY SINE Alu 1 306 -5 528 228 35 14 chr9 12986902 12987047 -104875580 + L1MC5 LINE L1 6971 7118 -843 210 128 0 0 chr9 12987047 12987086 -104875541 + (TC)n Simple_repeat Simple_repeat 1 39 0 488 239 26 0 chr9 12987091 12987204 -104875423 - FLAM_A SINE Alu -17 116 1 920 247 69 10 chr9 12987205 12987509 -104875118 + L1MC5 LINE L1 7105 7426 -535 711 186 124 11 chr9 12987599 12987776 -104874851 - MER3 DNA MER1_type -8 201 5 591 254 40 22 chr9 12987902 12988177 -104874450 + L1MC5 LINE L1 7629 7908 -53 638 199 118 39 chr9 12988197 12988276 -104874351 + Charlie2 DNA MER1_type 2496 2567 -295 1957 46 0 4 chr9 12988276 12988515 -104874112 - AluY SINE Alu 0 311 74 638 199 118 39 chr9 12988515 12988766 -104873861 + Charlie2 DNA MER1_type 2567 2852 -10 182 386 10 20 chr9 12988789 12988890 -104873737 - MER5A DNA MER1_type -45 144 45 257 369 80 23 chr9 12990904 12991080 -104871547 + MIR3 SINE MIR 16 201 -7 232 324 0 0 chr9 12991244 12991312 -104871315 + MER69 DNA AcHobo 5 72 -2454 506 245 32 16 chr9 12991313 12991501 -104871126 + MER69 DNA AcHobo 2332 2522 -4 27 29 0 0 chr9 12991604 12991638 -104870989 + AT_rich Low_complexity Low_complexity 1 34 0 3281 78 39 0 chr9 12991698 12992134 -104870493 - MLT2A2 LTR ERVL 0 453 1 207 0 0 0 chr9 12992242 12992265 -104870362 + (CAA)n Simple_repeat Simple_repeat 2 24 0 283 259 0 0 chr9 12992360 12992418 -104870209 + HsTC2 DNA Tc2 94 151 -1747 990 198 60 16 chr9 12992508 12992824 -104869803 + L1ME1 LINE L1 1413 1879 -4547 560 133 0 0 chr9 12992851 12992949 -104869678 - L1MA4 LINE L1 -5 6295 6198 7149 183 31 6 chr9 12993051 12993603 -104869024 - L1 LINE L1 -1068 5078 4541 216 0 0 0 chr9 12993603 12993627 -104869000 + (TG)n Simple_repeat Simple_repeat 2 25 0 7149 183 31 6 chr9 12993627 12994136 -104868491 - L1 LINE L1 -1605 4541 3967 6244 113 25 39 chr9 12994136 12995158 -104867469 - LTR13 LTR ERVK 0 1007 1 7149 183 31 6 chr9 12995158 12995571 -104867056 - L1 LINE L1 -2179 3967 3566 548 199 7 28 chr9 12995574 12995715 -104866912 + L1ME1 LINE L1 1815 1952 -4474 1921 151 0 7 chr9 12995776 12996087 -104866540 + AluSx SINE Alu 1 309 0 3340 224 53 99 chr9 12996224 12997265 -104865362 + L1ME1 LINE L1 3921 4844 -1582 2983 114 16 5 chr9 12997265 12997702 -104864925 + MLT2A1 LTR ERVL 1 442 -2 3340 224 53 99 chr9 12997702 12998467 -104864160 + L1ME1 LINE L1 4844 5643 -783 480 221 55 21 chr9 12998479 12998624 -104864003 + L1M3f LINE L1 15 164 -5164 680 194 18 18 chr9 12998631 12998801 -104863826 + L1MA4 LINE L1 6126 6295 -5 336 208 83 33 chr9 12998801 12998921 -104863706 + L1ME1 LINE L1 5643 5768 -846 415 216 62 0 chr9 12998937 12999034 -104863593 + L1ME1 LINE L1 6154 6256 -190 42390 36 21 3 chr9 12999274 13005312 -104857315 + L1PA3 LINE L1 3 6155 0 23 0 0 0 chr9 13005651 13005674 -104856953 + AT_rich Low_complexity Low_complexity 1 23 0 25 90 0 0 chr9 13005741 13005808 -104856819 + AT_rich Low_complexity Low_complexity 1 67 0 756 65 0 0 chr9 13005834 13005941 -104856686 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 21 0 0 0 chr9 13006444 13006465 -104856162 + AT_rich Low_complexity Low_complexity 1 21 0 5686 66 4 0 chr9 13006826 13007566 -104855061 + L1PA8 LINE L1 5424 6166 -6 5210 166 35 27 chr9 13008979 13010394 -104852233 + L1MA8 LINE L1 4802 6224 -67 508 43 145 0 chr9 13010394 13010463 -104852164 + MADE1 DNA Mariner 1 79 -1 5210 166 35 27 chr9 13010463 13010529 -104852098 + L1MA8 LINE L1 6224 6288 -3 2558 134 44 2 chr9 13010811 13011220 -104851407 + MSTA LTR MaLR 1 426 -2 283 270 0 0 chr9 13011581 13011644 -104850983 + MER5A DNA MER1_type 7 69 -120 2393 301 90 28 chr9 13012361 13013584 -104849043 + L1MEc LINE L1 35 1333 -5063 3281 66 0 2 chr9 13013746 13014170 -104848457 - L1PA7 LINE L1 -4 6150 5728 718 306 31 9 chr9 13014447 13014676 -104847951 + MIR SINE MIR 7 240 -22 1112 110 0 19 chr9 13014840 13014994 -104847633 + AluSq/x SINE Alu 1 151 -162 556 169 145 6 chr9 13015094 13015260 -104847367 + AluSg/x SINE Alu 117 305 -4 34 42 0 0 chr9 13015370 13015418 -104847209 + AT_rich Low_complexity Low_complexity 1 48 0 309 372 54 0 chr9 13016035 13016183 -104846444 - MLT1K LTR MaLR -197 391 236 259 371 91 8 chr9 13016443 13016707 -104845920 + L2 LINE L2 2534 2819 -495 2089 61 93 4 chr9 13017886 13018165 -104844462 + AluY SINE Alu 1 304 -7 2285 108 0 0 chr9 13018601 13018907 -104843720 + AluY SINE Alu 1 306 -5 186 43 0 0 chr9 13019190 13019213 -104843414 + (TC)n Simple_repeat Simple_repeat 2 24 0 1178 182 108 130 chr9 13019504 13019911 -104842716 - MLT2B2 LTR ERVL 0 515 118 270 0 0 0 chr9 13019918 13019948 -104842679 + (GA)n Simple_repeat Simple_repeat 2 31 0 545 160 150 0 chr9 13019948 13020048 -104842579 - MLT2B3 LTR ERVL -322 232 118 198 0 0 0 chr9 13020055 13020077 -104842550 + (GA)n Simple_repeat Simple_repeat 2 23 0 551 160 150 0 chr9 13020077 13020177 -104842450 - MLT2B3 LTR ERVL -322 232 118 216 0 0 0 chr9 13020184 13020208 -104842419 + (GA)n Simple_repeat Simple_repeat 2 25 0 535 170 150 0 chr9 13020208 13020308 -104842319 - MLT2B3 LTR ERVL -322 232 118 1188 190 69 0 chr9 13020334 13020550 -104842077 - MLT2B3 LTR ERVL -323 231 1 387 380 79 0 chr9 13020556 13020785 -104841842 + MIR SINE MIR 13 259 -3 1474 210 39 47 chr9 13021348 13021581 -104841046 - MLT1B LTR MaLR -12 378 148 2453 73 0 13 chr9 13021581 13021896 -104840731 + AluY SINE Alu 1 311 0 1474 210 39 47 chr9 13021896 13022043 -104840584 - MLT1B LTR MaLR -242 148 1 712 271 40 29 chr9 13022475 13022748 -104839879 + LTR16A LTR ERVL 86 361 -89 4849 161 11 14 chr9 13022848 13023336 -104839291 + L1PB4 LINE L1 4950 5438 -718 1684 196 3 3 chr9 13023336 13023632 -104838995 + AluJb SINE Alu 3 298 -14 4849 161 11 14 chr9 13023632 13024340 -104838287 + L1PB4 LINE L1 5438 6149 -7 200 276 0 79 chr9 13024679 13024755 -104837872 + L2 LINE L2 3161 3230 -42 914 197 110 99 chr9 13025077 13025612 -104837015 + MER67C LTR ERV1 1 466 0 279 221 79 57 chr9 13026396 13026536 -104836091 - L1ME4a LINE L1 -11 6110 5968 562 332 49 0 chr9 13026557 13026762 -104835865 - MIR SINE MIR -27 235 21 423 293 56 26 chr9 13026763 13027029 -104835598 - L1ME4a LINE L1 -335 5786 5513 23 54 0 0 chr9 13027116 13027153 -104835474 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr9 13027716 13027739 -104834888 + AT_rich Low_complexity Low_complexity 1 23 0 266 315 52 56 chr9 13027827 13028040 -104834587 - L2 LINE L2 -6 3307 3096 23 0 0 0 chr9 13028657 13028680 -104833947 + AT_rich Low_complexity Low_complexity 1 23 0 473 219 10 0 chr9 13029646 13029742 -104832885 + Charlie5 DNA MER1_type 142 238 -2374 233 98 24 0 chr9 13029756 13029797 -104832830 + Charlie5 DNA MER1_type 2530 2571 -41 1324 198 20 3 chr9 13029802 13030100 -104832527 - L1MA7 LINE L1 -1 6290 5988 258 333 12 42 chr9 13030153 13030321 -104832306 - MIR SINE MIR -1 261 99 270 0 0 0 chr9 13030417 13030447 -104832180 + (TG)n Simple_repeat Simple_repeat 2 31 0 5726 154 36 7 chr9 13031267 13032282 -104830345 + L1MC1 LINE L1 5288 6332 -1 1234 170 0 5 chr9 13032463 13032663 -104829964 + AluJb SINE Alu 85 283 -29 859 159 10 66 chr9 13032690 13032888 -104829739 + L1MC1 LINE L1 6037 6211 -122 772 278 53 56 chr9 13033782 13034249 -104828378 + L1ME LINE L1 490 955 -5575 765 278 138 47 chr9 13034237 13034955 -104827672 + L1ME LINE L1 846 1593 -4947 * 1295 251 86 53 chr9 13034936 13036303 -104826324 + L1ME LINE L1 1889 3292 -3248 26 0 0 0 chr9 13036694 13036720 -104825907 + AT_rich Low_complexity Low_complexity 1 26 0 828 256 89 63 chr9 13037165 13037594 -104825033 - MER67D LTR ERV1 -8 506 67 44 0 0 0 chr9 13037898 13037942 -104824685 + AT_rich Low_complexity Low_complexity 1 44 0 282 363 16 44 chr9 13038340 13038522 -104824105 - MIR SINE MIR -82 180 4 228 111 0 0 chr9 13039599 13039635 -104822992 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 333 0 0 0 chr9 13039777 13039814 -104822813 + (TG)n Simple_repeat Simple_repeat 1 37 0 192 77 0 0 chr9 13040029 13040055 -104822572 + (CAG)n Simple_repeat Simple_repeat 1 26 0 947 236 81 24 chr9 13041732 13042193 -104820434 - MLT1E1 LTR MaLR 0 593 119 1994 252 101 24 chr9 13042480 13043418 -104819209 - L1MEc LINE L1 -2843 4114 3104 1910 292 17 10 chr9 13043420 13044006 -104818621 + MER90 LTR ERV1 1 590 -24 1570 277 76 27 chr9 13044042 13044603 -104818024 - L1MEc LINE L1 -4011 3127 2504 2840 150 8 10 chr9 13044603 13045091 -104817536 - L1PA16 LINE L1 -3 6163 5677 1570 277 76 27 chr9 13045091 13045442 -104817185 - L1MEc LINE L1 -4634 2504 2171 325 246 188 29 chr9 13045456 13045733 -104816894 - L1MC5 LINE L1 -36 7925 7605 1740 176 80 41 chr9 13045734 13046273 -104816354 - MLT2A2 LTR ERVL -2 552 1 22 0 0 0 chr9 13046288 13046310 -104816317 + AT_rich Low_complexity Low_complexity 1 22 0 1988 110 0 4 chr9 13046424 13046729 -104815898 - AluY SINE Alu 0 304 1 275 343 106 25 chr9 13046966 13047211 -104815416 + L2 LINE L2 1707 1971 -1343 342 0 0 0 chr9 13047404 13047442 -104815185 + (TC)n Simple_repeat Simple_repeat 1 38 0 416 302 76 44 chr9 13047510 13047749 -104814878 - MLT1F LTR MaLR -291 264 19 1185 160 9 5 chr9 13047864 13048083 -104814544 - L1MA5A LINE L1 -6 6291 6072 301 327 60 22 chr9 13048157 13048474 -104814153 - L1MEc LINE L1 -4864 2093 1781 247 263 0 0 chr9 13048480 13048537 -104814090 - L1PA16 LINE L1 -15 6151 6095 * 799 237 39 2 chr9 13048506 13048733 -104813894 - L1PA16 LINE L1 -73 6092 5858 514 289 102 29 chr9 13048734 13049028 -104813599 - L1MEc LINE L1 -5223 1738 1373 2318 69 3 31 chr9 13049333 13049652 -104812975 - AluY SINE Alu -1 310 1 30 45 0 0 chr9 13050269 13050313 -104812314 + AT_rich Low_complexity Low_complexity 1 44 0 243 300 69 85 chr9 13051351 13051481 -104811146 - L2 LINE L2 -8 3264 3137 333 254 91 9 chr9 13051511 13051621 -104811006 + MER91B DNA MER1_type 11 129 -61 271 161 0 0 chr9 13052095 13052151 -104810476 + L1MC4 LINE L1 6648 6703 -1339 217 146 55 0 chr9 13052299 13052354 -104810273 + (TA)n Simple_repeat Simple_repeat 2 59 0 282 330 199 23 chr9 13053734 13053955 -104808672 - MLT1K LTR MaLR -201 387 128 996 190 10 10 chr9 13054395 13054600 -104808027 + MER3 DNA MER1_type 1 205 -4 685 243 60 46 chr9 13055482 13055700 -104806927 + MIR SINE MIR 41 261 -1 314 58 39 0 chr9 13056286 13056338 -104806289 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 307 339 34 25 chr9 13058707 13058825 -104803802 + L2 LINE L2 3144 3262 -10 1149 227 131 28 chr9 13059205 13059615 -104803012 - MER66A LTR ERV1 -4 474 122 691 310 24 20 chr9 13059714 13059969 -104802658 - MER90 LTR ERV1 -1 613 358 216 0 0 0 chr9 13059969 13059993 -104802634 + (T)n Simple_repeat Simple_repeat 1 24 0 2321 77 6 16 chr9 13060923 13061236 -104801391 + AluY SINE Alu 1 310 -1 456 315 30 75 chr9 13061883 13062067 -104800560 - MLT1K LTR MaLR -2 586 418 216 0 0 0 chr9 13062067 13062091 -104800536 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 456 315 30 75 chr9 13062091 13062201 -104800426 - MLT1K LTR MaLR -170 418 305 363 313 125 11 chr9 13062203 13062379 -104800248 + LTR16C LTR ERVL 4 199 -292 550 230 32 0 chr9 13062446 13062572 -104800055 + LTR16C LTR ERVL 358 487 -4 13265 147 33 20 chr9 13063200 13065589 -104797038 + Tigger1 DNA MER2_type 1 2418 0 320 337 89 0 chr9 13067126 13067227 -104795400 + MIR3 SINE MIR 84 193 -15 24 53 0 0 chr9 13067636 13067674 -104794953 + AT_rich Low_complexity Low_complexity 1 38 0 602 255 24 106 chr9 13068388 13068643 -104793984 - MIR SINE MIR -24 238 5 251 439 14 0 chr9 13068799 13068947 -104793680 + MIR3 SINE MIR 31 180 -28 183 410 0 48 chr9 13070701 13070806 -104791821 + MIR SINE MIR 16 115 -93 609 319 47 21 chr9 13071463 13071698 -104790929 + LTR33 LTR ERVL 10 250 -271 6816 35 4 0 chr9 13071868 13072687 -104789940 - L1PA5 LINE L1 0 6154 5333 467 330 73 31 chr9 13073560 13073984 -104788643 + MLT1J1 LTR MaLR 1 442 -4 21 0 0 0 chr9 13074021 13074042 -104788585 + AT_rich Low_complexity Low_complexity 1 21 0 209 373 125 25 chr9 13074156 13074588 -104788039 - L2 LINE L2 -26 3287 2813 1205 322 99 6 chr9 13074676 13075189 -104787438 + MLT1G1 LTR MaLR 3 563 -32 646 322 46 21 chr9 13075244 13075483 -104787144 + MIR SINE MIR 7 251 -11 207 0 0 0 chr9 13075863 13075886 -104786741 + (A)n Simple_repeat Simple_repeat 1 23 0 643 109 0 157 chr9 13076311 13076458 -104786169 + AluSg/x SINE Alu 159 282 -30 22 0 0 0 chr9 13076587 13076609 -104786018 + AT_rich Low_complexity Low_complexity 1 22 0 366 270 111 21 chr9 13076624 13076813 -104785814 - MIR SINE MIR -47 215 10 4097 184 29 55 chr9 13077234 13078584 -104784043 + L1MA6 LINE L1 4991 6295 -5 1528 104 101 56 chr9 13078596 13078864 -104783763 + AluY SINE Alu 19 298 -13 238 188 16 47 chr9 13079651 13079715 -104782912 + CT-rich Low_complexity Low_complexity 5 66 0 1503 114 61 8 chr9 13081006 13081252 -104781375 + MER44D DNA MER2_type 2 530 -79 1404 174 87 53 chr9 13081253 13081629 -104780998 - MER66A LTR ERV1 -3 475 97 1933 177 49 38 chr9 13081651 13082194 -104780433 - MLT2A2 LTR ERVL 0 554 1 282 246 18 0 chr9 13082375 13082432 -104780195 + MER44D DNA MER2_type 547 604 -1 22 0 0 0 chr9 13082882 13082904 -104779723 + AT_rich Low_complexity Low_complexity 1 22 0 496 271 93 19 chr9 13083478 13083692 -104778935 - MIR SINE MIR -1 261 32 212 133 67 50 chr9 13083743 13083803 -104778824 + MIR SINE MIR 106 166 -96 728 311 37 87 chr9 13083961 13084310 -104778317 + L2 LINE L2 2620 2912 -401 2249 105 0 3 chr9 13084310 13084615 -104778012 - AluY SINE Alu -7 304 1 728 311 37 87 chr9 13084615 13084998 -104777629 + L2 LINE L2 2912 3313 0 23 0 0 0 chr9 13085415 13085438 -104777189 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 13085568 13085591 -104777036 + AT_rich Low_complexity Low_complexity 1 23 0 204 125 0 0 chr9 13085917 13085949 -104776678 + (T)n Simple_repeat Simple_repeat 1 32 0 222 308 100 50 chr9 13087115 13087235 -104775392 + MIR3 SINE MIR 2 127 -81 23 68 0 0 chr9 13090648 13090692 -104771935 + AT_rich Low_complexity Low_complexity 1 44 0 1223 142 51 123 chr9 13091736 13092068 -104770559 + AluJb SINE Alu 1 308 -4 225 170 30 150 chr9 13092161 13092261 -104770366 + L1ME4a LINE L1 5935 6022 -99 7528 186 37 10 chr9 13092437 13094221 -104768406 + L1M2 LINE L1 3700 5536 -743 201 379 103 0 chr9 13094289 13094405 -104768222 + MIR SINE MIR 19 146 -116 11005 206 31 34 chr9 13095338 13095725 -104766902 - L1MA4A LINE L1 -23 6982 6595 357 43 0 0 chr9 13095725 13095772 -104766855 + (TG)n Simple_repeat Simple_repeat 2 48 0 11005 206 31 34 chr9 13095772 13096098 -104766529 - L1MA4A LINE L1 -410 6595 6270 207 0 0 0 chr9 13096098 13096121 -104766506 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 11005 206 31 34 chr9 13096121 13096585 -104766042 - L1MA4A LINE L1 -735 6270 5806 1783 157 62 20 chr9 13096585 13096942 -104765685 + THE1C LTR MaLR 1 372 -3 11005 206 31 34 chr9 13096942 13097978 -104764649 - L1MA4A LINE L1 -1199 5806 4769 2054 116 7 3 chr9 13097978 13098270 -104764357 - AluY SINE Alu -18 293 1 11005 206 31 34 chr9 13098270 13100646 -104761981 - L1MA4A LINE L1 -2236 4769 2442 185 0 0 39 chr9 13100646 13100672 -104761955 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 11005 206 31 34 chr9 13100672 13101325 -104761302 - L1MA4A LINE L1 -4563 2442 1789 4497 183 38 49 chr9 13101337 13101509 -104761118 - L1PB3 LINE L1 0 6154 5982 207 0 0 0 chr9 13101509 13101532 -104761095 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1838 161 0 0 chr9 13101532 13101806 -104760821 - AluSx SINE Alu -28 284 11 4497 183 38 49 chr9 13101806 13102059 -104760568 - L1PB3 LINE L1 -171 5983 5729 222 37 0 0 chr9 13102059 13102086 -104760541 + (TG)n Simple_repeat Simple_repeat 1 27 0 4497 183 38 49 chr9 13102086 13103535 -104759092 - L1PB3 LINE L1 -425 5729 4300 4290 284 26 2 chr9 13103538 13104722 -104757905 - L1MA4A LINE L1 -5058 1791 580 665 298 0 0 chr9 13104739 13104900 -104757727 - L1MA4A LINE L1 -6368 481 321 23 33 0 0 chr9 13104932 13104962 -104757665 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr9 13104992 13105027 -104757600 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr9 13105305 13105347 -104757280 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr9 13105775 13105811 -104756816 + AT_rich Low_complexity Low_complexity 1 36 0 3255 48 0 106 chr9 13106150 13106651 -104755976 - LTR7 LTR ERV1 -2 448 1 21 0 0 0 chr9 13107821 13107842 -104754785 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr9 13109720 13109758 -104752869 + AT_rich Low_complexity Low_complexity 1 38 0 3132 188 40 1 chr9 13110948 13111665 -104750962 + L1M2 LINE L1 4697 5443 -766 2284 109 3 0 chr9 13111665 13111967 -104750660 + AluSq SINE Alu 1 303 -10 3132 188 40 1 chr9 13111967 13111992 -104750635 + L1M2 LINE L1 5443 5466 -743 2621 111 6 0 chr9 13112095 13112456 -104750171 + THE1B LTR MaLR 2 364 0 10043 118 50 8 chr9 13112458 13113973 -104748654 + THE1B-int LTR MaLR 3 1580 0 2360 134 11 0 chr9 13113975 13114333 -104748294 + THE1B LTR MaLR 3 364 0 21 0 0 0 chr9 13114393 13114414 -104748213 + AT_rich Low_complexity Low_complexity 1 21 0 725 357 23 23 chr9 13114953 13115295 -104747332 + LTR16A LTR ERVL 72 413 -37 1253 284 99 24 chr9 13115351 13115855 -104746772 - MLT1F LTR MaLR 0 542 1 1352 270 157 18 chr9 13115878 13116382 -104746245 - MLT1E LTR MaLR -3 590 17 710 315 67 63 chr9 13116383 13116888 -104745739 + HERV16 LTR ERVL 74 580 -4416 193 290 0 32 chr9 13117318 13117380 -104745247 + MIR SINE MIR 85 144 -64 198 0 0 0 chr9 13118480 13118502 -104744125 + (TG)n Simple_repeat Simple_repeat 1 22 0 1426 183 26 95 chr9 13118506 13118895 -104743732 - MLT1B LTR MaLR -2 388 27 2290 118 0 6 chr9 13118902 13119216 -104743411 - AluSx SINE Alu 0 312 1 209 319 43 32 chr9 13121118 13121212 -104741415 - MIR SINE MIR -97 165 71 653 286 42 24 chr9 13122541 13122754 -104739873 + MIR SINE MIR 8 224 -38 482 104 0 0 chr9 13122816 13122883 -104739744 + Alu SINE Alu 1 67 -251 1118 213 47 84 chr9 13122950 13123378 -104739249 - MER92A LTR ERV1 0 412 1 917 219 16 3 chr9 13123951 13124226 -104738401 + MER89 LTR ERV1 1 378 -181 2073 120 7 10 chr9 13124267 13124400 -104738227 + AluSc SINE Alu 1 133 -176 2019 109 0 72 chr9 13124400 13124731 -104737896 + AluSg SINE Alu 1 307 -3 2073 120 7 10 chr9 13124731 13124906 -104737721 + AluSc SINE Alu 133 308 -1 2298 196 32 6 chr9 13124912 13125385 -104737242 - MER67D LTR ERV1 -33 478 1 870 196 0 50 chr9 13125385 13125499 -104737128 + MER89 LTR ERV1 369 470 -89 2369 128 6 6 chr9 13125499 13125842 -104736785 - MER61A LTR ERV1 0 343 1 870 196 0 50 chr9 13125842 13125926 -104736701 + MER89 LTR ERV1 470 557 -2 800 241 99 26 chr9 13126003 13126345 -104736282 - MSTD LTR MaLR -3 393 1 225 302 94 68 chr9 13126535 13126727 -104735900 - L2 LINE L2 -144 3169 2973 457 170 54 18 chr9 13126727 13126839 -104735788 + MER4C LTR ERV1 1 116 -349 1029 217 100 112 chr9 13126921 13127410 -104735217 + LTR34 LTR ERV1 137 695 -4 526 244 0 133 chr9 13127437 13127662 -104734965 - L2 LINE L2 -391 2923 2729 337 124 34 15 chr9 13127758 13127828 -104734799 - MER67D LTR ERV1 -392 122 64 241 194 15 15 chr9 13128163 13128230 -104734397 + T-rich Low_complexity Low_complexity 4 70 0 701 168 12 12 chr9 13128250 13128417 -104734210 + CT-rich Low_complexity Low_complexity 3 169 0 851 194 6 6 chr9 13128562 13128890 -104733737 + CT-rich Low_complexity Low_complexity 1 328 0 202 234 0 0 chr9 13132920 13132967 -104729660 + A-rich Low_complexity Low_complexity 1 47 0 357 313 69 6 chr9 13133226 13133386 -104729241 + MIR SINE MIR 49 218 -44 2152 129 0 0 chr9 13133808 13134119 -104728508 + AluSx SINE Alu 1 311 -1 219 296 184 0 chr9 13134738 13134836 -104727791 - L2 LINE L2 -16 3256 3141 188 330 87 50 chr9 13134981 13135199 -104727428 - L2 LINE L2 -231 3041 2816 26 0 0 0 chr9 13135481 13135507 -104727120 + AT_rich Low_complexity Low_complexity 1 26 0 1728 169 14 0 chr9 13136028 13136306 -104726321 + AluJo SINE Alu 5 286 -26 218 161 32 32 chr9 13136314 13136376 -104726251 + A-rich Low_complexity Low_complexity 5 66 0 1804 112 0 0 chr9 13136964 13137215 -104725412 - AluSc SINE Alu -21 288 38 25 31 0 0 chr9 13137521 13137553 -104725074 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 13137782 13137803 -104724824 + AT_rich Low_complexity Low_complexity 1 21 0 351 292 58 18 chr9 13137921 13138092 -104724535 + L1ME LINE L1 5482 5659 -462 1284 212 48 10 chr9 13138220 13138531 -104724096 - MER33 DNA MER1_type 0 324 2 198 302 47 23 chr9 13138833 13138919 -104723708 + MIR SINE MIR 54 141 -67 2124 122 19 50 chr9 13139260 13139636 -104722991 + THE1B LTR MaLR 1 364 0 11184 101 19 0 chr9 13139636 13141186 -104721441 + THE1B-int LTR MaLR 1 1580 0 2044 114 62 31 chr9 13141187 13141539 -104721088 + THE1B LTR MaLR 2 364 0 482 272 99 47 chr9 13141568 13141601 -104721026 + MIR SINE MIR 33 63 -199 1511 175 50 68 chr9 13141601 13141983 -104720644 + THE1C LTR MaLR 1 375 0 482 272 99 47 chr9 13141983 13142162 -104720465 + MIR SINE MIR 63 256 -6 181 196 59 59 chr9 13142222 13142273 -104720354 + MIR SINE MIR 207 257 -5 9483 25 0 0 chr9 13142345 13144243 -104718384 - L1PA2 LINE L1 -1 6154 4257 27 36 0 36 chr9 13144926 13144944 -104717683 + AT_rich Low_complexity Low_complexity 1 18 -36 2237 75 4 0 chr9 13144944 13145270 -104717357 + AluY SINE Alu 2 328 0 27 36 0 36 chr9 13145270 13145306 -104717321 + AT_rich Low_complexity Low_complexity 18 54 0 228 306 41 16 chr9 13145914 13146035 -104716592 + L1ME LINE L1 5518 5641 -480 203 217 0 29 chr9 13147934 13148003 -104714624 + (TA)n Simple_repeat Simple_repeat 2 68 0 8223 186 21 12 chr9 13148135 13150074 -104712553 + L1MC1 LINE L1 6 2053 -4373 760 242 27 31 chr9 13150092 13150385 -104712242 + L1M4 LINE L1 4310 4601 -1545 297 250 110 0 chr9 13150380 13150516 -104712111 + L1M4 LINE L1 3794 3944 -2202 * 761 168 22 119 chr9 13150513 13150739 -104711888 + L1MA6 LINE L1 6093 6296 -4 1094 245 112 40 chr9 13150824 13151114 -104711513 + L1M4 LINE L1 4699 5038 -1108 2173 104 0 0 chr9 13151114 13151402 -104711225 + AluSg SINE Alu 13 300 -10 1094 245 112 40 chr9 13151402 13151585 -104711042 + L1M4 LINE L1 5038 5206 -940 * 3622 231 54 3 chr9 13151582 13152920 -104709707 + L1MC1 LINE L1 2100 3507 -2919 2768 143 47 0 chr9 13152951 13153462 -104709165 + L1MA2 LINE L1 5769 6303 -1 262 236 63 24 chr9 13153507 13153634 -104708993 + L1ME4a LINE L1 5944 6075 -46 5619 189 22 38 chr9 13153637 13155314 -104707313 + L1MC1 LINE L1 4971 6607 -6 187 345 46 11 chr9 13155327 13155414 -104707213 - MIR SINE MIR -83 125 36 302 86 29 29 chr9 13156150 13156220 -104706407 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 358 291 48 62 chr9 13156670 13156880 -104705747 - MIR SINE MIR -8 254 48 2120 141 34 8 chr9 13157153 13157508 -104705119 + THE1B LTR MaLR 1 364 0 180 335 39 95 chr9 13158229 13158408 -104704219 - L2 LINE L2 -207 3065 2897 231 225 28 0 chr9 13158648 13158719 -104703908 + (CA)n Simple_repeat Simple_repeat 2 74 0 187 366 123 25 chr9 13159016 13159300 -104703327 - L2 LINE L2 -670 2644 2333 32 57 0 0 chr9 13159322 13159375 -104703252 + AT_rich Low_complexity Low_complexity 1 53 0 321 89 0 0 chr9 13159873 13159918 -104702709 + (T)n Simple_repeat Simple_repeat 1 45 0 207 0 0 0 chr9 13160151 13160174 -104702453 + (T)n Simple_repeat Simple_repeat 1 23 0 240 86 0 0 chr9 13160961 13160996 -104701631 + (TG)n Simple_repeat Simple_repeat 2 36 0 1997 244 99 38 chr9 13161999 13162758 -104699869 - L1ME1 LINE L1 -5 6161 5357 489 301 100 26 chr9 13162848 13163349 -104699278 + L1M4 LINE L1 3044 3581 -2565 1443 228 43 73 chr9 13163354 13163820 -104698807 + L1ME1 LINE L1 5672 6123 -43 236 261 15 0 chr9 13164028 13164093 -104698534 + L1MEd LINE L1 973 1038 -5081 413 307 42 32 chr9 13164137 13164395 -104698232 + L1MEd LINE L1 1098 1403 -4786 327 292 75 32 chr9 13164747 13165093 -104697534 + L1MEd LINE L1 2114 2474 -3655 26 74 0 0 chr9 13165417 13165471 -104697156 + AT_rich Low_complexity Low_complexity 1 54 0 219 250 0 0 chr9 13165822 13165870 -104696757 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 262 253 36 0 chr9 13165871 13165954 -104696673 + L1MC4 LINE L1 6614 6699 -1343 1089 139 18 72 chr9 13166538 13166761 -104695866 - L1PA16 LINE L1 0 6166 5956 202 182 0 0 chr9 13167131 13167164 -104695463 + (TGG)n Simple_repeat Simple_repeat 3 35 0 2045 132 0 13 chr9 13168248 13168551 -104694076 - AluSx SINE Alu -13 299 1 25 0 0 0 chr9 13169077 13169102 -104693525 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr9 13170576 13170618 -104692009 + AT_rich Low_complexity Low_complexity 1 42 0 2233 118 67 76 chr9 13170803 13170991 -104691636 + MSTA LTR MaLR 1 189 -239 18663 89 8 1 chr9 13170991 13174434 -104688193 + L1PA7 LINE L1 2695 6154 0 2233 118 67 76 chr9 13174434 13174677 -104687950 + MSTA LTR MaLR 189 428 0 2555 176 46 62 chr9 13177154 13177822 -104684805 + L1MA4 LINE L1 5632 6296 -4 647 259 131 34 chr9 13178149 13178385 -104684242 - MIR SINE MIR 0 262 4 1767 157 18 0 chr9 13180199 13180521 -104682106 - AluSg SINE Alu 0 327 1 1833 34 13 8 chr9 13181113 13181351 -104681276 + L1PA4 LINE L1 5917 6155 0 236 384 46 26 chr9 13181371 13181522 -104681105 + L2 LINE L2 2943 3096 -217 309 314 107 0 chr9 13182565 13182686 -104679941 + L2 LINE L2 3176 3309 -4 183 80 0 0 chr9 13183896 13183921 -104678706 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 228 247 0 22 chr9 13186104 13186193 -104676434 - L1MC4 LINE L1 -1339 6703 6617 812 301 67 33 chr9 13186349 13186768 -104675859 + L2 LINE L2 2877 3309 -4 354 267 70 76 chr9 13187638 13187810 -104674817 + MIR SINE MIR 73 243 -19 2021 238 11 6 chr9 13188546 13189089 -104673538 + L1M4 LINE L1 4734 5279 -867 9761 127 36 5 chr9 13189091 13190647 -104671980 + Tigger1 DNA MER2_type 814 2418 0 850 231 166 23 chr9 13192147 13192618 -104670009 - L1MDb LINE L1 -1224 5182 4645 913 298 65 6 chr9 13192745 13193123 -104669504 - L1MDb LINE L1 -1903 4503 4094 30 83 0 0 chr9 13193124 13193196 -104669431 + AT_rich Low_complexity Low_complexity 1 72 0 551 273 83 14 chr9 13193203 13193419 -104669208 - L1MDb LINE L1 -2305 4101 3871 1020 190 0 16 chr9 13193420 13193604 -104669023 - AluJb SINE Alu 0 312 132 213 225 0 0 chr9 13193604 13193644 -104668983 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 752 154 0 0 chr9 13193673 13193790 -104668837 - AluJb SINE Alu -193 119 3 1540 260 48 66 chr9 13193797 13194585 -104668042 - L1MDb LINE L1 -2531 3875 3105 1610 204 119 28 chr9 13194585 13195046 -104667581 + MLT1D LTR MaLR 1 503 -2 1540 260 48 66 chr9 13195046 13195183 -104667444 - L1MDb LINE L1 -3301 3105 2967 561 253 75 22 chr9 13195254 13195621 -104667006 - L1MDb LINE L1 -4815 1591 1202 297 135 0 0 chr9 13196344 13196396 -104666231 + (TG)n Simple_repeat Simple_repeat 1 52 0 522 158 16 24 chr9 13196397 13196524 -104666103 + GA-rich Low_complexity Low_complexity 1 126 0 280 323 61 67 chr9 13197358 13197655 -104664972 + LTR16C LTR ERVL 194 488 -3 848 157 0 8 chr9 13198645 13198779 -104663848 + AluSq/x SINE Alu 2 134 -179 1637 162 7 74 chr9 13198794 13199103 -104663524 + AluSx SINE Alu 3 290 -22 2362 138 42 45 chr9 13199183 13199363 -104663264 - MSTB LTR MaLR 0 426 247 2165 132 73 9 chr9 13199363 13199705 -104662922 - THE1B LTR MaLR 0 364 1 11750 94 1 7 chr9 13199705 13201294 -104661333 - THE1B-int LTR MaLR 0 1580 1 1973 163 80 0 chr9 13201294 13201631 -104660996 - THE1B LTR MaLR 0 364 1 2362 138 42 45 chr9 13201631 13201875 -104660752 - MSTB LTR MaLR -176 250 1 582 304 49 66 chr9 13202056 13202299 -104660328 + MIR SINE MIR 5 243 -19 26 88 0 0 chr9 13202437 13202505 -104660122 + AT_rich Low_complexity Low_complexity 1 68 0 29 47 0 0 chr9 13203642 13203685 -104658942 + AT_rich Low_complexity Low_complexity 1 43 0 2102 118 0 19 chr9 13204037 13204350 -104658277 + AluSg SINE Alu 1 307 -3 233 232 0 0 chr9 13205025 13205081 -104657546 + T-rich Low_complexity Low_complexity 1 56 0 1704 233 15 25 chr9 13206020 13206423 -104656204 - MER47B DNA MER2_type 0 418 20 431 320 45 6 chr9 13206868 13207075 -104655552 + MIR SINE MIR 15 228 -34 381 279 155 40 chr9 13207836 13208062 -104654565 - MLT1J LTR MaLR -154 357 106 6103 74 1 4 chr9 13208213 13209012 -104653615 - L1PA6 LINE L1 0 6154 5358 225 0 0 0 chr9 13210085 13210110 -104652517 + (CA)n Simple_repeat Simple_repeat 1 25 0 317 244 0 24 chr9 13212334 13212416 -104650211 - MLT1H LTR MaLR -364 185 106 2325 99 3 6 chr9 13212460 13212772 -104649855 - AluSx SINE Alu -1 311 1 1149 256 76 51 chr9 13214209 13214697 -104647930 + LTR53 LTR ERVL 20 519 0 29 28 0 0 chr9 13216730 13216766 -104645861 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 13217006 13217027 -104645600 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 13217145 13217194 -104645433 + AT_rich Low_complexity Low_complexity 1 49 0 231 186 57 29 chr9 13217194 13217264 -104645363 + L1ME4a LINE L1 5337 5408 -713 326 269 22 15 chr9 13217318 13217452 -104645175 + GA-rich Low_complexity Low_complexity 2 136 0 440 316 119 26 chr9 13217470 13217888 -104644739 + L1ME4a LINE L1 5498 5967 -154 1468 207 39 33 chr9 13217901 13218264 -104644363 - MLT1A1 LTR MaLR 0 365 1 282 56 0 0 chr9 13218712 13218748 -104643879 + (TA)n Simple_repeat Simple_repeat 1 36 0 2148 89 17 10 chr9 13218749 13219042 -104643585 - AluSx SINE Alu -17 295 1 22 0 0 0 chr9 13219190 13219212 -104643415 + AT_rich Low_complexity Low_complexity 1 22 0 756 287 101 49 chr9 13219955 13220283 -104642344 - MLT1J LTR MaLR -57 454 110 1522 225 108 32 chr9 13220847 13221345 -104641282 - LTR55 LTR ERV -7 541 6 4706 144 30 25 chr9 13221380 13222227 -104640400 - MER49 LTR ERV1 -24 899 49 274 83 92 174 chr9 13222216 13222325 -104640302 - MER49 LTR ERV1 -823 100 1 * 372 163 0 0 chr9 13222334 13222420 -104640207 + T-rich Low_complexity Low_complexity 1 86 0 10217 14 0 0 chr9 13222420 13224383 -104638244 - L1HS LINE L1 0 6155 4193 6484 24 0 0 chr9 13224381 13225139 -104637488 + L1HS LINE L1 3439 4196 -1950 * 21 0 0 0 chr9 13226042 13226063 -104636564 + AT_rich Low_complexity Low_complexity 1 21 0 275 311 48 0 chr9 13226816 13226919 -104635708 + L2 LINE L2 3148 3255 -17 180 246 15 46 chr9 13228023 13228088 -104634539 - L2 LINE L2 -37 3235 3173 182 344 47 23 chr9 13228235 13228363 -104634264 - L2 LINE L2 -340 2974 2844 480 297 150 38 chr9 13230091 13230384 -104632243 + MLT1J2 LTR MaLR 5 330 -120 475 314 69 25 chr9 13232383 13232587 -104630040 + L2 LINE L2 2424 2636 -678 1364 225 28 3 chr9 13232589 13232874 -104629753 - ERVL-B1 LTR ERVL -5244 520 229 487 254 29 14 chr9 13232914 13233052 -104629575 - ERVL-B1 LTR ERVL -5623 141 2 2146 208 83 29 chr9 13233057 13233539 -104629088 - MLT2B1 LTR ERVL -8 512 5 845 312 112 31 chr9 13233547 13234002 -104628625 + L2 LINE L2 2805 3296 -17 378 42 0 0 chr9 13234004 13234052 -104628575 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 2015 106 11 3 chr9 13234763 13235046 -104627581 - AluSq SINE Alu -15 298 14 287 278 178 30 chr9 13235217 13235386 -104627241 - MIR SINE MIR -58 204 11 186 143 0 0 chr9 13236066 13236101 -104626526 + (CCA)n Simple_repeat Simple_repeat 2 36 0 2013 160 27 11 chr9 13236455 13236824 -104625803 - THE1C LTR MaLR 0 375 1 437 130 0 0 chr9 13237149 13237218 -104625409 - L1PA13 LINE L1 -3 6160 6092 25 31 0 0 chr9 13237825 13237857 -104624770 + AT_rich Low_complexity Low_complexity 1 32 0 180 365 0 0 chr9 13238535 13238598 -104624029 - L2 LINE L2 0 3313 3251 245 393 21 38 chr9 13238727 13238913 -104623714 - L2 LINE L2 -246 3026 2844 23 0 0 0 chr9 13239096 13239119 -104623508 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr9 13239167 13239208 -104623419 + (CA)n Simple_repeat Simple_repeat 2 42 0 456 335 71 22 chr9 13239739 13239963 -104622664 - MIR SINE MIR -15 247 13 268 241 121 91 chr9 13241464 13241696 -104620931 + L1MC4 LINE L1 6755 6993 -1049 186 174 0 0 chr9 13241907 13241953 -104620674 + (TA)n Simple_repeat Simple_repeat 2 47 0 2652 140 33 11 chr9 13242094 13242551 -104620076 - MLT1C LTR MaLR 0 467 1 220 349 93 35 chr9 13244215 13244387 -104618240 - MER5A DNA MER1_type -7 182 1 4878 200 43 17 chr9 13244545 13246472 -104616155 - L1MA10 LINE L1 -4 6330 4344 26 0 0 0 chr9 13249160 13249186 -104613441 + AT_rich Low_complexity Low_complexity 1 26 0 236 378 28 0 chr9 13251116 13251259 -104611368 + MIR SINE MIR 102 248 -14 207 211 19 19 chr9 13252420 13252472 -104610155 + CT-rich Low_complexity Low_complexity 2 53 0 727 217 12 24 chr9 13252959 13253125 -104609502 - FRAM SINE Alu -2 164 1 387 273 31 70 chr9 13253159 13253235 -104609392 - MLT1K LTR MaLR 0 588 511 2324 55 0 3 chr9 13253235 13253527 -104609100 + AluY SINE Alu 1 291 -20 531 0 0 0 chr9 13253527 13253586 -104609041 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 387 273 31 70 chr9 13253586 13253735 -104608892 - MLT1K LTR MaLR -75 513 371 1748 187 0 0 chr9 13253846 13254140 -104608487 - AluJo SINE Alu -16 296 3 242 28 0 28 chr9 13254677 13254713 -104607914 + (TTG)n Simple_repeat Simple_repeat 2 36 0 473 270 38 13 chr9 13254771 13254930 -104607697 - MER104 DNA Tc2 -9 171 9 478 327 57 16 chr9 13254961 13255209 -104607418 + MIR SINE MIR 5 262 0 788 236 97 0 chr9 13255878 13256073 -104606554 + MER20 DNA MER1_type 1 214 -5 881 148 112 133 chr9 13257119 13257457 -104605170 - MER33 DNA MER1_type 0 324 1 393 329 51 7 chr9 13257899 13258036 -104604591 - MIR SINE MIR -114 148 6 507 107 0 0 chr9 13260525 13260600 -104602027 + (TA)n Simple_repeat Simple_repeat 2 76 0 2017 218 54 30 chr9 13260615 13261056 -104601571 - MLT2B1 LTR ERVL -68 452 1 1027 234 12 81 chr9 13261195 13261541 -104601086 - MLT1H LTR MaLR -169 380 59 192 347 40 0 chr9 13261592 13261667 -104600960 + MIR SINE MIR 51 128 -80 706 191 48 64 chr9 13261967 13262155 -104600472 - MER5A DNA MER1_type -1 188 4 580 318 87 12 chr9 13262208 13262460 -104600167 - MLT1I LTR MaLR -134 275 5 377 390 110 24 chr9 13262546 13263082 -104599545 - L2 LINE L2 -880 2434 1853 195 42 0 0 chr9 13263414 13263438 -104599189 + (CA)n Simple_repeat Simple_repeat 2 25 0 279 203 22 138 chr9 13263545 13263683 -104598944 - MLT1H LTR MaLR -3 546 425 769 265 45 30 chr9 13263944 13264144 -104598483 - MER63A DNA MER1_type -2 208 6 239 196 54 120 chr9 13264237 13264329 -104598298 - L2 LINE L2 0 3272 3187 273 128 0 0 chr9 13264379 13264426 -104598201 + (CA)n Simple_repeat Simple_repeat 2 48 0 202 388 29 29 chr9 13266198 13266368 -104596259 + L3 LINE CR1 1407 1576 -1 320 365 72 38 chr9 13266564 13266827 -104595800 + L3 LINE CR1 557 828 -749 254 226 0 16 chr9 13266830 13266892 -104595735 + L1ME2 LINE L1 6004 6064 -100 597 344 82 22 chr9 13267272 13267638 -104594989 + L3 LINE CR1 837 1224 -353 44 20 0 0 chr9 13267752 13267803 -104594824 + AT_rich Low_complexity Low_complexity 1 51 0 186 167 0 0 chr9 13267861 13267897 -104594730 + (CA)n Simple_repeat Simple_repeat 1 36 0 953 256 73 38 chr9 13268743 13269192 -104593435 + Charlie4a DNA MER1_type 3 467 -41 218 57 57 0 chr9 13269295 13269330 -104593297 + T-rich Low_complexity Low_complexity 4 40 0 184 225 141 14 chr9 13269567 13269638 -104592989 + L2 LINE L2 137 216 -3098 459 252 9 9 chr9 13270323 13270434 -104592193 + MIR SINE MIR 31 141 -121 418 344 7 26 chr9 13270628 13270782 -104591845 - MIR3 SINE MIR -19 189 39 190 358 63 0 chr9 13271314 13271409 -104591218 + L2 LINE L2 3193 3293 -20 250 340 119 16 chr9 13271552 13271746 -104590881 + L2 LINE L2 2812 3025 -247 251 326 44 44 chr9 13272179 13272314 -104590313 - L2 LINE L2 -1 3271 3137 864 305 0 5 chr9 13272406 13272629 -104589998 + MIR SINE MIR 8 229 -33 22 70 0 0 chr9 13272716 13272759 -104589868 + AT_rich Low_complexity Low_complexity 1 43 0 1087 86 0 7 chr9 13272762 13272913 -104589714 - L1PA10 LINE L1 -11 6157 6008 1188 278 54 84 chr9 13273089 13273661 -104588966 - MLT1H1 LTR MaLR 0 555 1 353 352 98 34 chr9 13273759 13274023 -104588604 + L2 LINE L2 2950 3230 -42 21 0 0 0 chr9 13274184 13274205 -104588422 + AT_rich Low_complexity Low_complexity 1 21 0 502 278 181 0 chr9 13274664 13274869 -104587758 - MIR SINE MIR -10 252 11 212 235 12 74 chr9 13274994 13275075 -104587552 - L2 LINE L2 -905 2409 2334 375 229 57 8 chr9 13275504 13275626 -104587001 + LTR16A1 LTR ERVL 330 457 0 212 398 27 32 chr9 13276537 13276758 -104585869 + L2 LINE L2 2684 2903 -411 184 327 159 19 chr9 13278714 13278821 -104583806 - L2 LINE L2 0 3272 3151 756 241 93 0 chr9 13278959 13279175 -104583452 + MER69 DNA AcHobo 2291 2526 0 2289 81 0 0 chr9 13279493 13279789 -104582838 + AluY SINE Alu 1 296 -15 657 322 48 9 chr9 13280495 13280725 -104581902 + MIR SINE MIR 10 248 -14 217 128 43 0 chr9 13281450 13281497 -104581130 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 253 187 93 40 chr9 13282942 13283017 -104579610 - MIR SINE MIR 0 262 184 28 0 0 0 chr9 13283103 13283131 -104579496 + AT_rich Low_complexity Low_complexity 1 28 0 213 238 16 66 chr9 13283356 13283478 -104579149 + A-rich Low_complexity Low_complexity 4 119 0 23 78 0 0 chr9 13283570 13283621 -104579006 + AT_rich Low_complexity Low_complexity 1 51 0 326 319 55 55 chr9 13284000 13284361 -104578266 + L1M4 LINE L1 2690 3050 -3096 2787 239 22 8 chr9 13284422 13285065 -104577562 + MER82 DNA MER2_type 2 653 0 1523 222 29 18 chr9 13285311 13285654 -104576973 + MLT1A1 LTR MaLR 7 353 -12 22 0 0 0 chr9 13285822 13285844 -104576783 + AT_rich Low_complexity Low_complexity 1 22 0 303 143 16 16 chr9 13288320 13288383 -104574244 - MLT1H LTR MaLR -446 103 41 1972 124 0 0 chr9 13289566 13289839 -104572788 + AluSx SINE Alu 1 273 -39 207 0 0 0 chr9 13291130 13291153 -104571474 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 236 235 0 86 chr9 13291182 13291263 -104571364 + MLT1L LTR MaLR 137 221 -367 299 213 0 0 chr9 13291314 13291361 -104571266 + MER5A DNA MER1_type 50 96 -93 2336 152 8 0 chr9 13291361 13291729 -104570898 + MLT2D LTR ERVL 1 371 -43 510 162 10 50 chr9 13291809 13291908 -104570719 + MER5A DNA MER1_type 94 188 -1 1328 277 137 31 chr9 13291985 13292569 -104570058 + MLT2F LTR ERVL 18 663 0 1537 155 0 12 chr9 13293240 13293498 -104569129 - AluJb SINE Alu -57 255 1 189 214 31 10 chr9 13293857 13293955 -104568672 + (CTATA)n Simple_repeat Simple_repeat 4 103 0 306 0 0 0 chr9 13294449 13294483 -104568144 + (CA)n Simple_repeat Simple_repeat 1 34 0 1703 165 0 32 chr9 13295849 13296158 -104566469 + AluJb SINE Alu 1 299 -13 358 110 0 122 chr9 13296883 13296965 -104565662 + L1MA10 LINE L1 6253 6324 -10 264 185 0 0 chr9 13297349 13297403 -104565224 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 370 0 0 chr9 13297504 13297577 -104565050 - L2 LINE L2 -234 3038 2966 288 0 0 0 chr9 13298426 13298458 -104564169 + (TG)n Simple_repeat Simple_repeat 2 33 0 1989 89 48 7 chr9 13298463 13298734 -104563893 - AluSx SINE Alu -15 297 16 240 366 0 0 chr9 13299004 13299086 -104563541 - L2 LINE L2 0 3313 3232 328 256 47 116 chr9 13299964 13300222 -104562405 - L2 LINE L2 0 3313 3074 203 250 39 0 chr9 13300378 13300430 -104562197 + L2 LINE L2 3219 3272 0 297 0 0 0 chr9 13300779 13300812 -104561815 + (TG)n Simple_repeat Simple_repeat 2 34 0 188 289 100 56 chr9 13301112 13301202 -104561425 + MIR3 SINE MIR 6 99 -109 1141 305 72 54 chr9 13301300 13301691 -104560936 + L2 LINE L2 2346 2728 -585 1727 180 3 7 chr9 13301691 13301991 -104560636 + AluJo SINE Alu 10 308 -4 381 22 0 0 chr9 13301992 13302038 -104560589 + (CA)n Simple_repeat Simple_repeat 1 46 0 1141 305 72 54 chr9 13302038 13302586 -104560041 + L2 LINE L2 2727 3313 0 282 417 22 7 chr9 13302698 13302837 -104559790 + L2 LINE L2 3127 3267 -5 315 85 0 0 chr9 13305149 13305196 -104557431 + (TC)n Simple_repeat Simple_repeat 1 47 0 24 32 0 0 chr9 13306067 13306098 -104556529 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr9 13307600 13307625 -104555002 + (TG)n Simple_repeat Simple_repeat 2 26 0 363 60 0 0 chr9 13308017 13308067 -104554560 + (TG)n Simple_repeat Simple_repeat 1 50 0 26 30 0 0 chr9 13308532 13308565 -104554062 + AT_rich Low_complexity Low_complexity 1 33 0 1111 259 132 15 chr9 13308620 13309218 -104553409 - Charlie7 DNA MER1_type -316 2296 1629 446 281 79 55 chr9 13309306 13309598 -104553029 - Charlie7 DNA MER1_type -2277 335 37 368 20 0 20 chr9 13310036 13310086 -104552541 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 22 35 0 0 chr9 13310374 13310403 -104552224 + AT_rich Low_complexity Low_complexity 1 29 0 2093 99 0 0 chr9 13312174 13312447 -104550180 + AluSq SINE Alu 41 313 0 577 264 99 20 chr9 13312511 13312712 -104549915 - LTR33 LTR ERVL 0 521 305 370 220 136 51 chr9 13312819 13312847 -104549780 - LTR33 LTR ERVL -380 141 117 1890 184 19 21 chr9 13312847 13313223 -104549404 - THE1C LTR MaLR 0 375 1 370 220 136 51 chr9 13313223 13313312 -104549315 - LTR33 LTR ERVL -404 117 14 208 65 87 0 chr9 13313408 13313454 -104549173 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 0 0 0 chr9 13313530 13313553 -104549074 + AT_rich Low_complexity Low_complexity 1 23 0 262 353 10 0 chr9 13314160 13314262 -104548365 + MIR3 SINE MIR 97 199 -9 338 363 52 44 chr9 13315674 13315922 -104546705 + L1MEd LINE L1 964 1213 -4906 272 328 95 21 chr9 13316015 13316256 -104546371 + HAL1 LINE L1 1403 1661 -846 1309 161 158 61 chr9 13317183 13317544 -104545083 + MSTD LTR MaLR 1 396 0 27 0 0 0 chr9 13318178 13318205 -104544422 + AT_rich Low_complexity Low_complexity 1 27 0 2902 257 70 56 chr9 13318207 13319699 -104542928 - L1MC4 LINE L1 0 8042 6531 407 321 87 5 chr9 13319769 13319953 -104542674 + MIR SINE MIR 59 257 -5 280 288 0 0 chr9 13320911 13320991 -104541636 + T-rich Low_complexity Low_complexity 1 80 0 192 321 0 0 chr9 13321003 13321056 -104541571 - L2 LINE L2 -4 3309 3257 571 327 122 41 chr9 13321155 13321785 -104540842 - L2 LINE L2 -110 3203 2439 1876 101 7 64 chr9 13322483 13322781 -104539846 - MER52A-int LTR ERV1 -5113 1978 1698 3062 160 76 0 chr9 13322898 13323333 -104539294 - MER52A-int LTR ERV1 -6520 571 88 195 42 0 0 chr9 13323333 13323357 -104539270 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 3062 160 76 0 chr9 13323357 13323445 -104539182 - MER52A-int LTR ERV1 -7003 88 8 1571 196 24 0 chr9 13323452 13323743 -104538884 - MER52A LTR ERV1 0 1755 1458 4262 205 79 20 chr9 13323764 13324750 -104537877 - MER52A LTR ERV1 -711 1044 1 360 188 62 0 chr9 13324776 13324840 -104537787 - L1M1 LINE L1 -5856 1709 1642 * 14015 172 33 15 chr9 13324793 13330762 -104531865 + L1MA2 LINE L1 1640 7724 0 2078 110 10 10 chr9 13330975 13331141 -104531486 - AluSx SINE Alu -11 301 133 348 24 0 0 chr9 13331141 13331182 -104531445 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2078 110 10 10 chr9 13331182 13331314 -104531313 - AluSx SINE Alu -178 134 3 642 206 18 30 chr9 13331344 13331509 -104531118 + L1ME3 LINE L1 5999 6161 -1 717 238 20 15 chr9 13331773 13331986 -104530641 + Ricksha DNA DNA 2 291 -963 * 8265 150 43 17 chr9 13331979 13332532 -104530095 + Ricksha DNA DNA 1690 2227 -1019 4109 93 0 4 chr9 13332532 13333088 -104529539 - MER41A LTR ERV1 0 554 1 8265 150 43 17 chr9 13333088 13334043 -104528584 + Ricksha DNA DNA 2227 3237 -9 23 78 0 0 chr9 13334397 13334448 -104528179 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr9 13335982 13336006 -104526621 + AT_rich Low_complexity Low_complexity 1 24 0 381 342 8 0 chr9 13337563 13337680 -104524947 - L2 LINE L2 -1 3271 3154 276 315 74 9 chr9 13338021 13338129 -104524498 - L2 LINE L2 -4 3268 3154 462 297 78 45 chr9 13338863 13339390 -104523237 - L1M4 LINE L1 -1984 4398 3854 1717 187 20 0 chr9 13340187 13340534 -104522093 - L1MA4A LINE L1 -7 6296 5943 276 285 65 41 chr9 13340947 13341070 -104521557 + MIR3 SINE MIR 74 199 -9 435 227 97 32 chr9 13341174 13341328 -104521299 + MIR SINE MIR 97 260 -2 514 360 102 21 chr9 13341637 13342253 -104520374 + L3 LINE CR1 502 1167 -410 342 0 0 0 chr9 13342271 13342309 -104520318 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr9 13342831 13342861 -104519766 + AT_rich Low_complexity Low_complexity 1 30 0 520 284 137 55 chr9 13342861 13343090 -104519537 - L2 LINE L2 -31 3282 3073 1943 122 0 14 chr9 13343090 13343468 -104519159 + AluSx SINE Alu 1 374 0 520 284 137 55 chr9 13343468 13343778 -104518849 - L2 LINE L2 -240 3073 2689 1396 205 81 9 chr9 13344756 13345088 -104517539 + MER65C LTR ERV1 106 461 0 345 125 0 0 chr9 13345460 13345516 -104517111 + (TG)n Simple_repeat Simple_repeat 1 56 0 320 227 76 68 chr9 13345524 13345656 -104516971 + L2 LINE L2 3169 3301 -12 182 323 81 10 chr9 13345777 13345876 -104516751 + L2 LINE L2 3158 3263 -9 546 186 141 0 chr9 13346725 13346881 -104515746 + MER53 DNA DNA 12 189 0 2558 182 30 9 chr9 13346992 13347004 -104515623 - L1MA4A LINE L1 -407 5776 5766 1707 174 3 9 chr9 13347004 13347338 -104515289 - L1MB3 LINE L1 -4 6179 5848 2558 182 30 9 chr9 13347338 13347884 -104514743 - L1MA4A LINE L1 -417 5766 5208 1926 221 33 14 chr9 13347868 13348438 -104514189 - L1MA4A LINE L1 -2471 3675 3095 * 277 312 9 9 chr9 13348455 13348564 -104514063 - L1M4 LINE L1 -3631 2751 2643 533 231 62 5 chr9 13348573 13348676 -104513951 - L1M4 LINE L1 -3639 2743 2647 485 58 14 0 chr9 13348676 13348745 -104513882 + (TA)n Simple_repeat Simple_repeat 1 70 0 533 231 62 5 chr9 13348745 13348836 -104513791 - L1M4 LINE L1 -3735 2647 2538 * 6883 185 79 10 chr9 13348830 13349618 -104513009 - L1M4 LINE L1 -4850 1534 802 1602 192 3 7 chr9 13349618 13349640 -104512987 - AluJb SINE Alu -6 306 285 532 24 73 0 chr9 13349640 13349722 -104512905 + (GTTTG)n Simple_repeat Simple_repeat 2 89 0 1602 192 3 7 chr9 13349722 13350006 -104512621 - AluJb SINE Alu -27 285 1 6883 185 79 10 chr9 13350006 13350630 -104511997 - L1M4 LINE L1 -5582 802 24 257 329 60 27 chr9 13350961 13351110 -104511517 - MLT1I LTR MaLR -255 154 1 295 350 52 36 chr9 13351160 13351354 -104511273 - L3 LINE CR1 -47 1530 1334 1945 156 0 0 chr9 13352162 13352445 -104510182 + AluSx SINE Alu 3 285 -27 217 355 47 9 chr9 13352752 13352859 -104509768 + MIR3 SINE MIR 12 122 -86 234 146 24 0 chr9 13352863 13352904 -104509723 + MIR SINE MIR 148 189 -73 21 36 0 0 chr9 13353171 13353199 -104509428 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr9 13354242 13354264 -104508363 + (TC)n Simple_repeat Simple_repeat 1 22 0 369 0 0 0 chr9 13354268 13354309 -104508318 + (TG)n Simple_repeat Simple_repeat 2 42 0 228 86 0 0 chr9 13355031 13355066 -104507561 + (TC)n Simple_repeat Simple_repeat 2 36 0 520 111 12 0 chr9 13356087 13356168 -104506459 + AluJ/FRAM SINE Alu 216 297 -15 28 0 0 0 chr9 13356207 13356235 -104506392 + AT_rich Low_complexity Low_complexity 1 28 0 6862 138 27 6 chr9 13356447 13358596 -104504031 - L1MA1 LINE L1 -4 6298 4104 488 296 0 0 chr9 13359925 13360040 -104502587 - MIR3 SINE MIR -5 203 89 249 271 0 0 chr9 13360088 13360136 -104502491 - L2 LINE L2 -15 3257 3210 433 307 80 18 chr9 13360452 13360615 -104502012 - MIR SINE MIR -6 256 84 510 217 0 0 chr9 13361906 13362012 -104500615 + L1MA9 LINE L1 6171 6276 -36 215 348 11 11 chr9 13365595 13365687 -104496940 - MIR SINE MIR -3 259 168 272 343 0 10 chr9 13366488 13366590 -104496037 - Charlie7 DNA MER1_type -2511 101 1 207 262 16 16 chr9 13366863 13366924 -104495703 - L2 LINE L2 -11 3261 3201 352 328 9 0 chr9 13368471 13368587 -104494040 - MIR SINE MIR -121 141 25 318 106 0 0 chr9 13369373 13369420 -104493207 + (TG)n Simple_repeat Simple_repeat 2 48 0 1712 137 0 0 chr9 13371074 13371322 -104491305 + AluSx SINE Alu 21 268 -44 345 319 53 43 chr9 13372792 13372980 -104489647 - L2 LINE L2 -32 3281 3092 244 202 138 46 chr9 13373020 13373129 -104489498 - L2 LINE L2 -411 2903 2785 21 36 0 0 chr9 13373436 13373464 -104489163 + AT_rich Low_complexity Low_complexity 1 28 0 404 323 83 10 chr9 13373788 13373980 -104488647 - MIR SINE MIR -11 251 46 369 316 29 46 chr9 13374126 13374300 -104488327 + MIR SINE MIR 2 172 -90 22 56 0 0 chr9 13375718 13375754 -104486873 + AT_rich Low_complexity Low_complexity 1 36 0 235 329 37 0 chr9 13376108 13376190 -104486437 - L2 LINE L2 -2 3311 3227 338 354 14 51 chr9 13376204 13376419 -104486208 - L2 LINE L2 -236 3036 2830 31 58 0 0 chr9 13376696 13376748 -104485879 + AT_rich Low_complexity Low_complexity 1 52 0 3921 246 47 20 chr9 13376760 13378185 -104484442 + L1M4c LINE L1 2251 3720 -2662 343 309 111 51 chr9 13378567 13378956 -104483671 + L3 LINE CR1 708 1119 -458 1496 268 23 0 chr9 13378956 13379351 -104483276 - L1 LINE L1 -3553 2593 2190 536 164 8 67 chr9 13379333 13379363 -104483264 - L1 LINE L1 -2701 3445 3415 * 1751 153 60 44 chr9 13379363 13379729 -104482898 - THE1C LTR MaLR 0 375 4 536 164 8 67 chr9 13379729 13379832 -104482795 - L1 LINE L1 -2731 3415 3320 290 360 18 9 chr9 13380156 13380267 -104482360 - MIR3 SINE MIR -23 185 74 183 392 69 10 chr9 13380816 13380918 -104481709 + L2 LINE L2 3156 3263 -9 479 246 96 48 chr9 13381688 13382042 -104480585 + HAL1 LINE L1 2010 2380 -127 25 0 0 0 chr9 13382120 13382145 -104480482 + AT_rich Low_complexity Low_complexity 1 25 0 1053 210 48 65 chr9 13383062 13383414 -104479213 - L1MC4 LINE L1 -3 8039 7694 438 348 57 13 chr9 13383597 13383824 -104478803 + MIR SINE MIR 26 262 0 207 0 0 0 chr9 13386498 13386521 -104476106 + (A)n Simple_repeat Simple_repeat 1 23 0 1508 216 57 67 chr9 13386872 13387382 -104475245 - MLT1D LTR MaLR 0 505 1 580 354 66 8 chr9 13387838 13388202 -104474425 + L2 LINE L2 2098 2482 -832 26 64 0 0 chr9 13389433 13389480 -104473147 + AT_rich Low_complexity Low_complexity 1 47 0 257 218 106 13 chr9 13389741 13389835 -104472792 + AluY SINE Alu 132 201 -100 329 62 21 0 chr9 13390331 13390379 -104472248 + (TG)n Simple_repeat Simple_repeat 2 50 0 2329 39 42 0 chr9 13390796 13391081 -104471546 - AluY SINE Alu -14 297 1 191 214 125 0 chr9 13391126 13391182 -104471445 - MIR SINE MIR -101 161 99 5991 152 68 15 chr9 13391236 13392401 -104470226 + Tigger3b DNA MER2_type 2 1228 -3 721 149 0 0 chr9 13392574 13392688 -104469939 + FLAM_C SINE Alu 14 127 -16 332 238 267 0 chr9 13393650 13393755 -104468872 - MER102a DNA MER1_type -14 316 184 935 293 75 58 chr9 13393764 13394297 -104468330 - MER34 LTR ERV1 0 542 1 371 288 83 8 chr9 13394298 13394430 -104468197 - MER102a DNA MER1_type -153 177 36 2699 172 67 7 chr9 13394707 13395259 -104467368 + L1MA9 LINE L1 5728 6312 0 210 276 17 0 chr9 13395483 13395541 -104467086 - MIR SINE MIR 0 262 204 325 323 109 0 chr9 13395561 13395781 -104466846 - L1ME4a LINE L1 -165 5956 5713 227 338 82 36 chr9 13395781 13396062 -104466565 - MLT1L LTR MaLR -1 614 321 274 194 41 171 chr9 13396409 13396579 -104466048 - L1ME4a LINE L1 -443 5678 5531 24 32 0 0 chr9 13396802 13396833 -104465794 + AT_rich Low_complexity Low_complexity 1 31 0 2790 152 98 12 chr9 13396843 13397447 -104465180 + L1MC1 LINE L1 5197 5854 -479 855 229 5 21 chr9 13397468 13397660 -104464967 + 7SLRNA srpRNA srpRNA 111 299 -21 2556 178 13 4 chr9 13397663 13398141 -104464486 + L1MC1 LINE L1 5840 6321 -12 198 0 0 0 chr9 13398142 13398164 -104464463 + (TA)n Simple_repeat Simple_repeat 2 23 0 * 444 82 0 0 chr9 13398163 13398224 -104464403 + (TG)n Simple_repeat Simple_repeat 2 62 0 194 360 113 7 chr9 13398574 13398724 -104463903 + L2 LINE L2 2809 2974 -298 391 326 36 31 chr9 13398734 13398930 -104463697 + MIR SINE MIR 51 247 -15 204 382 56 7 chr9 13399341 13399485 -104463142 + L2 LINE L2 3161 3311 -2 1464 219 132 39 chr9 13399856 13400318 -104462309 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr9 13401758 13401780 -104460847 + AT_rich Low_complexity Low_complexity 1 22 0 1798 171 13 3 chr9 13402291 13402600 -104460027 - AluJb SINE Alu 0 312 1 419 315 61 17 chr9 13404042 13404223 -104458404 + MER5A DNA MER1_type 1 189 0 212 286 188 53 chr9 13404995 13405128 -104457499 + MIR3 SINE MIR 9 159 -49 29 70 0 0 chr9 13405187 13405244 -104457383 + AT_rich Low_complexity Low_complexity 1 57 0 620 335 61 50 chr9 13405644 13406340 -104456287 - L2 LINE L2 -245 3068 2321 14224 120 12 4 chr9 13406781 13409769 -104452858 - L1PA8A LINE L1 0 6446 3448 1058 87 19 0 chr9 13409782 13409943 -104452684 + L1P LINE L1 3865 4028 -2118 235 152 0 0 chr9 13409942 13409988 -104452639 - L1PA8A LINE L1 -3014 3447 3402 * 1146 151 234 12 chr9 13409993 13410245 -104452382 - AluSg1 SINE Alu -1 308 1 10798 170 14 41 chr9 13410245 13412793 -104449834 - L1PA12 LINE L1 -3061 3400 14 742 243 92 34 chr9 13412956 13413225 -104449402 - L1ME2 LINE L1 0 6162 5874 580 271 65 9 chr9 13413236 13413450 -104449177 - L1ME2 LINE L1 -1034 5112 4887 247 326 53 8 chr9 13413810 13413942 -104448685 + L2 LINE L2 2837 2974 -298 771 331 83 11 chr9 13414604 13414870 -104447757 - MLT1I LTR MaLR -1 408 124 515 282 50 44 chr9 13414963 13415144 -104447483 + MIR SINE MIR 75 256 -6 543 244 96 89 chr9 13415334 13415605 -104447022 - MLT1H1 LTR MaLR -196 359 87 9114 249 41 25 chr9 13415723 13417266 -104445361 - L1M4 LINE L1 -758 5388 3871 763 127 0 0 chr9 13417266 13417384 -104445243 - FLAM_C SINE Alu -15 118 1 9114 249 41 25 chr9 13417384 13418892 -104443735 - L1M4 LINE L1 -2275 3871 2285 1623 219 0 0 chr9 13418892 13419194 -104443433 - AluJb SINE Alu -9 303 2 9114 249 41 25 chr9 13419194 13419217 -104443410 - L1M4 LINE L1 -3861 2285 2264 30 45 0 0 chr9 13420373 13420417 -104442210 + AT_rich Low_complexity Low_complexity 1 44 0 750 130 0 0 chr9 13421269 13421377 -104441250 + L1PA8 LINE L1 6052 6159 -13 2832 104 17 7 chr9 13421881 13422270 -104440357 + MLT2A2 LTR ERVL 1 396 -57 534 16 0 0 chr9 13422270 13422333 -104440294 + (TA)n Simple_repeat Simple_repeat 1 63 0 2832 104 17 7 chr9 13422333 13422355 -104440272 + MLT2A2 LTR ERVL 396 416 -37 460 242 57 13 chr9 13423480 13423637 -104438990 - MER103 DNA DNA -2 164 1 239 140 20 0 chr9 13424074 13424124 -104438503 + (CA)n Simple_repeat Simple_repeat 2 52 0 185 0 40 0 chr9 13424126 13424151 -104438476 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 217 197 30 0 chr9 13424226 13424292 -104438335 + (TA)n Simple_repeat Simple_repeat 2 69 0 219 274 3 15 chr9 13424409 13424477 -104438150 + MIR SINE MIR 88 140 -68 192 40 0 0 chr9 13425291 13425316 -104437311 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr9 13426803 13426825 -104435802 + AT_rich Low_complexity Low_complexity 1 22 0 191 359 51 26 chr9 13427044 13427161 -104435466 + L2 LINE L2 3148 3267 -5 2390 84 0 3 chr9 13428075 13428384 -104434243 - AluY SINE Alu -3 308 1 21 36 0 0 chr9 13428710 13428738 -104433889 + AT_rich Low_complexity Low_complexity 1 28 0 298 251 126 40 chr9 13428955 13429130 -104433497 + MIR SINE MIR 11 200 -62 292 282 23 30 chr9 13429248 13429379 -104433248 + GA-rich Low_complexity Low_complexity 3 132 0 189 0 0 0 chr9 13430207 13430228 -104432399 + (T)n Simple_repeat Simple_repeat 1 21 0 1587 187 14 10 chr9 13430241 13430535 -104432092 - 7SLRNA srpRNA srpRNA -13 307 13 243 61 0 0 chr9 13431659 13431692 -104430935 + (TC)n Simple_repeat Simple_repeat 2 34 0 503 197 27 158 chr9 13432589 13432666 -104429961 + Tigger3(Golem) DNA MER2_type 1 86 -2942 2110 95 21 0 chr9 13432666 13432951 -104429676 + AluSp SINE Alu 1 291 -22 503 197 27 158 chr9 13432951 13433056 -104429571 + Tigger3(Golem) DNA MER2_type 86 2585 -443 236 103 0 0 chr9 13433028 13433067 -104429560 + Tigger3(Golem) DNA MER2_type 2771 2809 -220 * 1326 174 55 0 chr9 13433231 13433466 -104429161 + Tigger3(Golem) DNA MER2_type 2780 3027 -2 787 142 0 16 chr9 13433562 13433689 -104428938 - FLAM_C SINE Alu -6 137 13 816 157 0 15 chr9 13433566 13433700 -104428927 - AluJo/FLAM SINE Alu -169 133 2 188 367 89 6 chr9 13433723 13433903 -104428724 + MIR SINE MIR 55 249 -13 204 67 0 0 chr9 13435162 13435192 -104427435 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2191 91 0 0 chr9 13435196 13435470 -104427157 - AluSc SINE Alu -33 276 3 1270 214 162 15 chr9 13435600 13436007 -104426620 + MLT1C LTR MaLR 1 467 0 1628 205 44 48 chr9 13436181 13436615 -104426012 - MER63B DNA MER1_type -4 432 1 1074 191 0 43 chr9 13438342 13438573 -104424054 - AluJo SINE Alu -6 306 86 204 125 0 0 chr9 13438971 13439003 -104423624 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 201 213 0 0 chr9 13441340 13441387 -104421240 + (CGG)n Simple_repeat Simple_repeat 3 49 0 275 274 78 29 chr9 13442347 13442449 -104420178 + MIR3 SINE MIR 71 177 -31 508 67 53 0 chr9 13443407 13443482 -104419145 + MADE1 DNA Mariner 2 80 0 391 308 68 0 chr9 13443796 13443942 -104418685 + MIR SINE MIR 53 208 -54 190 275 0 0 chr9 13444231 13444271 -104418356 - L2 LINE L2 -16 3256 3217 1311 159 112 35 chr9 13444349 13444663 -104417964 - MER44D DNA MER2_type 0 609 2 326 278 154 84 chr9 13444675 13444755 -104417872 - MIR SINE MIR -14 248 175 2463 59 13 0 chr9 13444755 13445058 -104417569 - AluY SINE Alu -4 307 1 326 278 154 84 chr9 13445058 13445204 -104417423 - MIR SINE MIR -87 175 6 265 189 19 0 chr9 13445980 13446033 -104416594 - MIR SINE MIR -111 151 98 24 53 0 0 chr9 13446211 13446249 -104416378 + AT_rich Low_complexity Low_complexity 1 38 0 9358 155 28 7 chr9 13446384 13446447 -104416180 - L1MA3 LINE L1 -106 7618 7558 2272 78 3 0 chr9 13446447 13446759 -104415868 - AluSp SINE Alu 0 313 1 9358 155 28 7 chr9 13446759 13449324 -104413303 - L1MA3 LINE L1 -166 7558 4929 9594 176 189 19 chr9 13449340 13451450 -104411177 - L1MA3 LINE L1 -5091 2474 8 337 289 0 35 chr9 13451548 13451662 -104410965 - MIR SINE MIR -1 261 152 359 40 0 20 chr9 13452021 13452071 -104410556 + (TA)n Simple_repeat Simple_repeat 2 50 0 240 86 0 0 chr9 13452811 13452846 -104409781 + (TATATG)n Simple_repeat Simple_repeat 4 38 0 263 357 10 0 chr9 13453061 13453159 -104409468 - L3 LINE CR1 -87 1490 1392 1840 152 31 0 chr9 13453319 13453698 -104408929 + AluSx SINE Alu 1 388 0 472 270 77 61 chr9 13453796 13454122 -104408505 + L1ME4a LINE L1 5496 5826 -295 343 205 83 70 chr9 13454171 13454327 -104408300 + L1ME4a LINE L1 5961 6118 -3 905 203 5 42 chr9 13454332 13454549 -104408078 + AluJo SINE Alu 65 273 -39 195 42 0 0 chr9 13454580 13454604 -104408023 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 13455594 13455617 -104407010 + AT_rich Low_complexity Low_complexity 1 23 0 470 187 32 24 chr9 13456999 13457122 -104405505 - L1MC4 LINE L1 0 8042 7919 183 80 0 0 chr9 13457132 13457157 -104405470 + (TC)n Simple_repeat Simple_repeat 1 25 0 216 0 0 0 chr9 13457178 13457202 -104405425 + (CA)n Simple_repeat Simple_repeat 2 25 0 199 329 82 14 chr9 13460602 13460748 -104401879 + L2 LINE L2 2885 3040 -232 24 32 0 0 chr9 13460870 13460901 -104401726 + AT_rich Low_complexity Low_complexity 1 31 0 249 362 73 34 chr9 13462898 13463075 -104399552 + MIR3 SINE MIR 17 200 -8 2349 65 20 0 chr9 13463399 13463692 -104398935 + AluY SINE Alu 1 299 -12 997 199 39 31 chr9 13463715 13463971 -104398656 - L1MA9 LINE L1 -40 6272 6015 316 289 78 82 chr9 13463999 13464231 -104398396 - MIR SINE MIR -4 258 28 1149 129 12 0 chr9 13464511 13464681 -104397946 + MSTA LTR MaLR 257 428 0 215 136 68 0 chr9 13465232 13465276 -104397351 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2253 140 46 10 chr9 13466046 13466459 -104396168 + MSTA LTR MaLR 1 428 0 315 404 67 5 chr9 13467067 13467260 -104395367 - MIR3 SINE MIR -2 206 2 1967 143 7 0 chr9 13468147 13468441 -104394186 - AluSx SINE Alu -14 298 3 29 47 0 0 chr9 13468463 13468506 -104394121 + AT_rich Low_complexity Low_complexity 1 43 0 363 197 66 0 chr9 13468676 13468752 -104393875 + MER58A DNA MER1_type 18 98 -9 22 0 0 0 chr9 13468820 13468842 -104393785 + AT_rich Low_complexity Low_complexity 1 22 0 1157 212 28 107 chr9 13469918 13470414 -104392213 - LTR37B LTR ERV1 0 468 12 562 14 0 0 chr9 13470773 13470846 -104391781 + AluY SINE Alu 232 304 -5 1441 67 62 0 chr9 13470853 13470895 -104391732 + AluY SINE Alu 80 118 -193 216 0 0 0 chr9 13470895 13470919 -104391708 + (TA)n Simple_repeat Simple_repeat 2 25 0 1441 67 62 0 chr9 13470919 13471069 -104391558 + AluY SINE Alu 118 284 -27 255 79 0 0 chr9 13471069 13471107 -104391520 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 217 299 77 34 chr9 13471233 13471350 -104391277 + MIR SINE MIR 21 142 -120 7584 179 108 70 chr9 13471356 13472128 -104390499 - L1MCa LINE L1 -3881 2545 1804 977 92 0 7 chr9 13472128 13472270 -104390357 - L1MB3 LINE L1 -7 6176 6036 7584 179 108 70 chr9 13472270 13472659 -104389968 - L1MCa LINE L1 -4622 1804 1431 2162 172 52 7 chr9 13472659 13473067 -104389560 - MSTB LTR MaLR 0 426 1 7584 179 108 70 chr9 13473067 13474335 -104388292 - L1MCa LINE L1 -4995 1431 23 227 320 26 0 chr9 13474389 13474467 -104388160 + MIR SINE MIR 183 262 0 180 0 0 0 chr9 13474683 13474703 -104387924 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1589 257 44 55 chr9 13475523 13476071 -104386556 - MLT1F LTR MaLR 0 542 1 197 211 0 0 chr9 13476071 13476109 -104386518 + MER5A DNA MER1_type 37 74 -115 3006 206 87 51 chr9 13476938 13477960 -104384667 - MER63D DNA MER1_type 0 1061 3 258 233 11 78 chr9 13480161 13480251 -104382376 - MIR SINE MIR -57 151 68 1272 148 95 15 chr9 13480819 13481083 -104381544 - L1MA5A LINE L1 -4 6293 6009 402 256 22 0 chr9 13481174 13481264 -104381363 + Charlie1 DNA MER1_type 1 92 -2669 2184 109 0 0 chr9 13481350 13481653 -104380974 + AluY SINE Alu 9 311 0 4490 170 96 36 chr9 13481653 13482779 -104379848 + Charlie1 DNA MER1_type 1564 2756 -5 259 254 94 85 chr9 13483122 13483441 -104379186 + L1ME4a LINE L1 5797 6118 -3 622 245 97 46 chr9 13483486 13483878 -104378749 + L1ME4a LINE L1 5675 6086 -35 22 0 0 0 chr9 13484288 13484310 -104378317 + AT_rich Low_complexity Low_complexity 1 22 0 1816 221 34 86 chr9 13485305 13485618 -104377009 + L1M4 LINE L1 3170 3498 -2648 1882 151 24 0 chr9 13485618 13485909 -104376718 + AluSx SINE Alu 1 298 -14 1816 221 34 86 chr9 13485909 13486364 -104376263 + L1M4 LINE L1 3498 3898 -2248 325 300 83 8 chr9 13486910 13487030 -104375597 - MLT1J LTR MaLR -253 258 130 973 280 83 21 chr9 13487030 13487400 -104375227 + MLT1I LTR MaLR 1 393 -16 1513 194 127 17 chr9 13487400 13487803 -104374824 + Charlie1b DNA MER1_type 1 447 -76 597 231 15 15 chr9 13488327 13488457 -104374170 + FLAM_A SINE Alu 1 130 -3 2304 59 0 7 chr9 13488640 13488930 -104373697 + AluY SINE Alu 24 311 0 2206 92 0 0 chr9 13489386 13489696 -104372931 + AluSx SINE Alu 1 310 0 206 264 38 0 chr9 13490520 13490573 -104372054 - L2 LINE L2 -8 3305 3251 1180 148 160 49 chr9 13490613 13490876 -104371751 - AluJb SINE Alu -10 292 1 2221 68 4 0 chr9 13491842 13492122 -104370505 + AluY SINE Alu 1 281 -30 293 267 95 26 chr9 13492447 13492563 -104370064 + MIR SINE MIR 124 247 -15 433 276 126 15 chr9 13494658 13494857 -104367770 - MIR SINE MIR -5 257 37 2162 69 0 7 chr9 13496111 13496386 -104366241 + AluY SINE Alu 35 307 -4 1778 161 10 0 chr9 13496417 13496708 -104365919 - AluJb SINE Alu -5 307 14 701 219 0 0 chr9 13496736 13496864 -104365763 + FLAM_A SINE Alu 1 128 -5 2598 288 97 15 chr9 13496892 13498152 -104364475 + L2 LINE L2 1923 3302 -11 298 241 46 56 chr9 13498190 13498298 -104364329 - L2 LINE L2 -17 3255 3149 1005 171 136 64 chr9 13498307 13498587 -104364040 + MLT1D LTR MaLR 3 302 -203 618 246 66 6 chr9 13499695 13499862 -104362765 + MIR SINE MIR 85 261 -1 268 301 32 0 chr9 13500032 13500125 -104362502 + MLT1J LTR MaLR 106 201 -310 26 74 0 0 chr9 13500828 13500882 -104361745 + AT_rich Low_complexity Low_complexity 1 54 0 8872 103 19 7 chr9 13501660 13502932 -104359695 - HSMAR1 DNA Mariner 0 1287 1 31 44 0 0 chr9 13503994 13504039 -104358588 + AT_rich Low_complexity Low_complexity 1 45 0 42 36 0 0 chr9 13504685 13504741 -104357886 + AT_rich Low_complexity Low_complexity 1 56 0 2202 108 7 0 chr9 13504827 13505134 -104357493 - AluSc SINE Alu 0 309 1 279 125 0 0 chr9 13505401 13505441 -104357186 - Alu SINE Alu -259 41 2 909 171 74 11 chr9 13505443 13505618 -104357009 - MER47A DNA MER2_type -180 186 1 1806 170 0 0 chr9 13507664 13507940 -104354687 + AluSx SINE Alu 1 276 -36 189 0 0 0 chr9 13507940 13507961 -104354666 + (TG)n Simple_repeat Simple_repeat 2 22 0 407 263 126 63 chr9 13508100 13508736 -104353891 + L1MC5 LINE L1 7260 7935 -26 1979 286 60 21 chr9 13508785 13509596 -104353031 - L1ME LINE L1 -5201 869 27 2482 265 93 23 chr9 13510428 13511641 -104350986 - L1ME LINE L1 -2889 3191 1902 1602 222 22 17 chr9 13511641 13512002 -104350625 + MLT1A1 LTR MaLR 1 363 -2 2482 265 93 23 chr9 13512002 13512127 -104350500 - L1ME LINE L1 -4178 1902 1787 1840 161 0 31 chr9 13512201 13512523 -104350104 + AluJb SINE Alu 1 312 0 816 284 83 75 chr9 13512533 13513782 -104348845 - L1ME LINE L1 -4693 1568 324 1734 200 33 80 chr9 13514183 13514226 -104348401 + MLT1A1 LTR MaLR 3 46 -319 837 152 8 0 chr9 13514226 13514358 -104348269 + FLAM_C SINE Alu 1 133 0 1734 200 33 80 chr9 13514358 13514704 -104347923 + MLT1A1 LTR MaLR 46 365 0 339 292 51 36 chr9 13514722 13514859 -104347768 - L1ME LINE L1 -5855 215 77 250 122 0 0 chr9 13514859 13514900 -104347727 + U5 snRNA snRNA 1 41 -75 468 0 0 0 chr9 13517202 13517254 -104345373 + (CA)n Simple_repeat Simple_repeat 2 53 0 278 300 12 0 chr9 13517325 13517485 -104345142 + (TA)n Simple_repeat Simple_repeat 1 162 0 231 184 35 0 chr9 13517520 13517607 -104345020 + (TA)n Simple_repeat Simple_repeat 1 90 0 312 327 25 6 chr9 13518596 13518755 -104343872 + L1ME4a LINE L1 5589 5750 -371 27 49 0 0 chr9 13518791 13518832 -104343795 + AT_rich Low_complexity Low_complexity 1 41 0 26 50 0 0 chr9 13518851 13518891 -104343736 + AT_rich Low_complexity Low_complexity 1 40 0 391 310 78 4 chr9 13518900 13519145 -104343482 + L1ME3A LINE L1 5683 5945 -225 281 235 17 109 chr9 13519218 13519337 -104343290 + L1ME3A LINE L1 5965 6072 -98 2585 98 8 11 chr9 13519463 13519839 -104342788 - THE1C LTR MaLR 0 375 1 1542 43 0 34 chr9 13520637 13520844 -104341783 + L1PA5 LINE L1 5955 6154 0 21 0 0 0 chr9 13521197 13521218 -104341409 + AT_rich Low_complexity Low_complexity 1 21 0 300 381 0 0 chr9 13523224 13523329 -104339298 + GA-rich Low_complexity Low_complexity 4 108 0 370 296 61 0 chr9 13524240 13524338 -104338289 + L2 LINE L2 3150 3253 -19 272 404 31 15 chr9 13524975 13525235 -104337392 + LTR16C LTR ERVL 215 478 -13 763 360 92 14 chr9 13525345 13525923 -104336704 + MERVL LTR ERVL 2637 3259 -2226 186 71 0 0 chr9 13526310 13526338 -104336289 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 468 263 9 9 chr9 13526342 13526456 -104336171 - FLAM_A SINE Alu -19 114 1 386 290 94 12 chr9 13527325 13527580 -104335047 + L1ME4a LINE L1 5845 6120 -1 1855 161 0 0 chr9 13528833 13529119 -104333508 + AluSx SINE Alu 3 288 -24 273 29 0 0 chr9 13529120 13529154 -104333473 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 25 31 0 0 chr9 13529195 13529227 -104333400 + AT_rich Low_complexity Low_complexity 1 32 0 2086 138 0 13 chr9 13529438 13529742 -104332885 + AluSx SINE Alu 1 300 -12 769 263 6 0 chr9 13529767 13529942 -104332685 + MER45A DNA AcHobo 1 176 -2 265 250 0 0 chr9 13530489 13530541 -104332086 - L2 LINE L2 -38 3234 3183 1429 214 7 23 chr9 13530552 13530861 -104331766 - AluJo SINE Alu -8 304 1 504 208 9 28 chr9 13531148 13531254 -104331373 + L2 LINE L2 3210 3313 0 26 0 0 0 chr9 13532304 13532330 -104330297 + AT_rich Low_complexity Low_complexity 1 26 0 420 210 0 0 chr9 13532384 13532465 -104330162 + MIR SINE MIR 182 262 0 245 197 49 131 chr9 13532467 13532589 -104330038 - MIR SINE MIR -70 192 81 362 309 53 27 chr9 13532852 13533040 -104329587 - L2 LINE L2 -2 3311 3119 29 0 0 0 chr9 13533201 13533230 -104329397 + AT_rich Low_complexity Low_complexity 1 29 0 1421 123 0 0 chr9 13533243 13533438 -104329189 + AluSx SINE Alu 3 197 -115 228 208 91 0 chr9 13533453 13533530 -104329097 + L1 LINE L1 3882 3965 -2181 936 191 5 36 chr9 13533581 13533775 -104328852 - MER5A DNA MER1_type -1 188 1 23 33 0 0 chr9 13535883 13535913 -104326714 + AT_rich Low_complexity Low_complexity 1 30 0 231 358 20 20 chr9 13536109 13536257 -104326370 + MIR SINE MIR 114 261 -1 22 0 0 0 chr9 13536343 13536365 -104326262 + AT_rich Low_complexity Low_complexity 1 22 0 27898 99 8 3 chr9 13536499 13541438 -104321189 - L1PA7 LINE L1 -11 6143 1178 1579 157 92 0 chr9 13541658 13541939 -104320688 - AluJb SINE Alu -5 307 1 1131 143 67 13 chr9 13542140 13542364 -104320263 - Tigger2 DNA MER2_type 0 2718 2483 84 36 0 0 chr9 13542364 13542476 -104320151 + AT_rich Low_complexity Low_complexity 1 112 0 1365 143 5 5 chr9 13542476 13542693 -104319934 - Tigger2 DNA MER2_type -234 2484 2268 1555 201 6 13 chr9 13542696 13543009 -104319618 + AluSx SINE Alu 1 311 -1 363 191 0 0 chr9 13543014 13543077 -104319550 - Tigger2 DNA MER2_type -2655 63 1 210 268 0 18 chr9 13543268 13543324 -104319303 + MIR SINE MIR 197 251 -11 732 260 46 25 chr9 13544755 13545104 -104317523 + L1MB1 LINE L1 3085 3449 -4116 703 224 0 0 chr9 13545105 13545239 -104317388 + AluJo SINE Alu 1 134 -178 410 250 8 0 chr9 13545240 13545360 -104317267 + L1MB1 LINE L1 3447 3567 -4000 856 170 14 7 chr9 13545396 13545543 -104317084 - AluJb SINE Alu -20 292 145 3747 78 10 10 chr9 13545577 13546091 -104316536 + L1PA10 LINE L1 5654 6167 -1 21 0 0 0 chr9 13546094 13546115 -104316512 + AT_rich Low_complexity Low_complexity 1 21 0 1151 255 10 3 chr9 13546122 13546420 -104316207 + L1MB1 LINE L1 6082 6381 -1184 430 205 0 0 chr9 13546562 13546640 -104315987 - AluJ/FRAM SINE Alu -19 293 216 4591 194 19 9 chr9 13546654 13547879 -104314748 + L1MB1 LINE L1 6344 7583 -4 293 250 0 42 chr9 13548017 13548089 -104314538 + L2 LINE L2 3241 3309 -4 229 342 13 0 chr9 13548516 13548592 -104314035 - L2 LINE L2 -299 2973 2897 3994 127 28 8 chr9 13548838 13549490 -104313137 + Tigger3b DNA MER2_type 32 696 -535 1227 125 198 32 chr9 13549486 13549734 -104312893 + Tigger3b DNA MER2_type 943 1231 0 * 201 39 0 0 chr9 13551404 13551430 -104311197 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chr9 13551440 13551470 -104311157 + AT_rich Low_complexity Low_complexity 1 30 0 212 331 55 31 chr9 13551803 13551930 -104310697 - L2 LINE L2 -830 2484 2355 21 0 0 0 chr9 13552067 13552088 -104310539 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr9 13553115 13553144 -104309483 + (TG)n Simple_repeat Simple_repeat 2 30 0 31 96 0 0 chr9 13553431 13553525 -104309102 + AT_rich Low_complexity Low_complexity 1 94 0 1302 53 0 24 chr9 13553608 13553777 -104308850 + AluY SINE Alu 134 298 -13 25 51 0 0 chr9 13554733 13554772 -104307855 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr9 13554938 13554962 -104307665 + AT_rich Low_complexity Low_complexity 1 24 0 5310 20 0 0 chr9 13555697 13556307 -104306320 + L1PA2 LINE L1 5545 6154 -1 499 176 0 11 chr9 13556995 13557086 -104305541 + HY4 scRNA scRNA 1 90 -3 340 229 42 76 chr9 13557644 13557762 -104304865 + MIR3 SINE MIR 54 167 -41 2154 175 56 10 chr9 13558137 13558549 -104304078 - MSTB1 LTR MaLR -1 431 1 867 283 88 34 chr9 13558822 13559321 -104303306 + L2 LINE L2 1447 1972 -1342 20223 160 70 53 chr9 13559326 13559392 -104303235 + L1MA2 LINE L1 13 76 -7647 2381 71 3 13 chr9 13559392 13559702 -104302925 - AluY SINE Alu -4 307 1 20223 160 70 53 chr9 13559702 13562662 -104299965 + L1MA2 LINE L1 76 2985 -4738 2034 121 16 23 chr9 13562662 13562968 -104299659 + AluSc SINE Alu 1 304 -5 20223 160 70 53 chr9 13562968 13565341 -104297286 + L1MA2 LINE L1 2985 5317 -2406 1966 163 28 17 chr9 13565341 13565696 -104296931 - THE1C LTR MaLR 0 375 17 20223 160 70 53 chr9 13565696 13567529 -104295098 + L1MA2 LINE L1 5317 7723 0 228 242 91 0 chr9 13567541 13567607 -104295020 + L2 LINE L2 1996 2067 -1247 357 238 73 78 chr9 13567608 13567814 -104294813 - L1ME3A LINE L1 -1 6169 5965 233 200 0 38 chr9 13567896 13567976 -104294651 - L1MC5 LINE L1 -431 7530 7454 617 314 34 25 chr9 13568061 13568300 -104294327 + L2 LINE L2 2461 2701 -613 713 265 88 8 chr9 13568373 13568622 -104294005 - L1MC4 LINE L1 -233 7809 7541 712 162 14 21 chr9 13568632 13568774 -104293853 - L1MC1 LINE L1 0 6333 6193 1165 141 0 198 chr9 13568777 13569145 -104293482 + L1MC2 LINE L1 5907 6201 -143 1163 123 5 5 chr9 13569163 13569358 -104293269 - L1MC1 LINE L1 -435 5898 5704 1327 123 50 3 chr9 13569360 13569678 -104292949 - L1MCa LINE L1 -4128 2298 1926 2816 16 0 0 chr9 13569679 13569990 -104292637 + AluYa5 SINE Alu 1 311 0 3843 192 23 54 chr9 13570098 13570694 -104291933 - L1MCa LINE L1 -5518 908 295 237 65 0 0 chr9 13570694 13570725 -104291902 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 1812 161 0 0 chr9 13570729 13571003 -104291624 - AluSx SINE Alu -37 275 2 3843 192 23 54 chr9 13571003 13571257 -104291370 - L1MCa LINE L1 -6134 292 79 2018 251 238 22 chr9 13571288 13572157 -104290470 - L1MC4 LINE L1 -528 7514 6458 1777 156 38 27 chr9 13572607 13572978 -104289649 + THE1C LTR MaLR 1 375 0 484 289 93 81 chr9 13572998 13573604 -104289023 + L2 LINE L2 2687 3309 -4 230 346 0 25 chr9 13574081 13574162 -104288465 + L2 LINE L2 3232 3310 -3 21 71 0 0 chr9 13574569 13574611 -104288016 + AT_rich Low_complexity Low_complexity 1 42 0 1911 119 0 0 chr9 13576077 13576345 -104286282 + AluSq SINE Alu 46 313 0 2164 103 3 3 chr9 13576433 13576724 -104285903 + AluSg1 SINE Alu 1 291 -18 316 269 14 92 chr9 13576792 13576933 -104285694 + MIR3 SINE MIR 13 142 -66 208 239 0 0 chr9 13577794 13577840 -104284787 + CT-rich Low_complexity Low_complexity 2 47 0 1817 145 46 36 chr9 13577927 13578231 -104284396 + AluSx SINE Alu 4 310 -2 190 261 0 90 chr9 13578836 13578947 -104283680 + MIR SINE MIR 147 247 -15 707 204 34 0 chr9 13579518 13579665 -104282962 - MER3 DNA MER1_type -10 199 48 2469 167 101 83 chr9 13579675 13580346 -104282281 - LTR8 LTR ERV1 -8 683 1 2176 122 10 0 chr9 13581244 13581538 -104281089 + AluSx SINE Alu 1 297 -15 35 0 0 0 chr9 13582034 13582069 -104280558 + AT_rich Low_complexity Low_complexity 1 35 0 387 215 20 40 chr9 13582900 13582921 -104279706 - L1MA10 LINE L1 -3 6331 6311 1178 222 43 40 chr9 13582921 13583273 -104279354 - L1ME2 LINE L1 -12 6152 5800 1587 245 57 45 chr9 13583331 13583841 -104278786 - MLT1E2 LTR MaLR 0 626 111 354 23 0 0 chr9 13583950 13583993 -104278634 + (TG)n Simple_repeat Simple_repeat 2 44 0 226 343 14 14 chr9 13584388 13584461 -104278166 + MER115 DNA AcHobo 324 396 -297 460 265 73 8 chr9 13584529 13584693 -104277934 + Zaphod DNA AcHobo 507 4030 -1 286 333 62 6 chr9 13584772 13584934 -104277693 - L1MEd LINE L1 -5663 456 286 1833 155 3 3 chr9 13585289 13585607 -104277020 + AluSx SINE Alu 1 318 0 642 347 70 66 chr9 13585773 13586517 -104276110 + L2 LINE L2 2288 3032 -240 240 226 160 0 chr9 13586514 13586620 -104276007 + MER113 DNA MER1_type? 94 216 -305 * 230 261 225 29 chr9 13586696 13586834 -104275793 + MIR3 SINE MIR 20 184 -24 24 32 0 0 chr9 13587187 13587218 -104275409 + AT_rich Low_complexity Low_complexity 1 31 0 183 182 61 0 chr9 13587312 13587378 -104275249 + (TGAA)n Simple_repeat Simple_repeat 1 70 0 446 316 15 25 chr9 13587926 13588122 -104274505 + L2 LINE L2 3118 3311 -2 561 84 0 0 chr9 13589292 13589363 -104273264 - AluS SINE Alu -232 80 10 280 172 172 13 chr9 13589919 13590070 -104272557 + MER33 DNA MER1_type 48 222 -102 398 148 69 0 chr9 13590145 13590246 -104272381 + MER33 DNA MER1_type 210 317 -46 578 240 176 28 chr9 13590664 13591023 -104271604 + L1MC5 LINE L1 7474 7885 -76 27 0 0 0 chr9 13591763 13591790 -104270837 + AT_rich Low_complexity Low_complexity 1 27 0 281 358 74 20 chr9 13592110 13592258 -104270369 - L2 LINE L2 -1 3271 3116 2219 122 0 0 chr9 13593586 13593881 -104268746 + AluSx SINE Alu 1 295 -17 236 233 244 22 chr9 13594346 13594526 -104268101 - MLT1L LTR MaLR -80 535 316 348 183 0 0 chr9 13594627 13594687 -104267940 - MER81 DNA DNA 0 114 55 542 261 0 39 chr9 13594848 13595028 -104267599 - MER5B DNA MER1_type -4 174 2 505 336 85 9 chr9 13595745 13595968 -104266659 - MIR SINE MIR -21 241 2 268 298 63 31 chr9 13596679 13596816 -104265811 + MIR3 SINE MIR 26 169 -39 2812 128 14 0 chr9 13597228 13597656 -104264971 - MER57B LTR ERV1 0 434 1 2522 137 31 19 chr9 13597667 13598261 -104264366 + MER4E LTR ERV1 1 779 0 706 163 111 58 chr9 13598545 13598735 -104263892 - MER3 DNA MER1_type 0 209 10 26 0 0 0 chr9 13599782 13599808 -104262819 + AT_rich Low_complexity Low_complexity 1 26 0 2229 110 3 10 chr9 13599815 13600116 -104262511 + AluSp SINE Alu 1 299 -14 185 176 137 0 chr9 13600215 13600266 -104262361 - MIR SINE MIR -98 164 107 714 306 103 16 chr9 13600331 13600756 -104261871 - MLT1K LTR MaLR 0 588 127 437 164 58 174 chr9 13601024 13601231 -104261396 + MLT1D LTR MaLR 5 187 -318 705 243 17 6 chr9 13602593 13602766 -104259861 - LTR40a LTR ERVL -344 175 1 377 255 128 4 chr9 13603666 13604051 -104258576 - L1MC4a LINE L1 -216 5905 5523 252 359 0 13 chr9 13604525 13604603 -104258024 + MIR SINE MIR 3 79 -183 446 303 73 18 chr9 13605027 13605192 -104257435 + MIR SINE MIR 77 250 -12 268 221 263 0 chr9 13605214 13605309 -104257318 + L2 LINE L2 3192 3311 -2 1519 128 0 9 chr9 13605521 13605748 -104256879 - AluJb SINE Alu -4 308 84 23 0 0 0 chr9 13607301 13607324 -104255303 + AT_rich Low_complexity Low_complexity 1 23 0 314 370 25 0 chr9 13607542 13607661 -104254966 - L2 LINE L2 -17 3255 3134 22 35 0 0 chr9 13607686 13607715 -104254912 + AT_rich Low_complexity Low_complexity 1 29 0 332 222 0 0 chr9 13607948 13608020 -104254607 - MIR SINE MIR -21 241 170 2167 134 0 0 chr9 13608389 13608696 -104253931 + AluSx SINE Alu 1 307 -5 1047 63 0 0 chr9 13608856 13609012 -104253615 + AluY SINE Alu 170 325 0 215 253 160 13 chr9 13610110 13610185 -104252442 - L2 LINE L2 -1 3271 3186 2456 92 0 0 chr9 13610519 13610822 -104251805 + AluSx SINE Alu 1 303 -9 306 309 206 6 chr9 13611756 13611921 -104250706 + MIR SINE MIR 45 242 -20 22 35 0 0 chr9 13613841 13613870 -104248757 + AT_rich Low_complexity Low_complexity 1 29 0 728 187 0 8 chr9 13613870 13613993 -104248634 + FLAM_C SINE Alu 1 122 -21 3602 45 2 0 chr9 13614335 13614778 -104247849 + L1PA6 LINE L1 5708 6151 -3 25 0 0 0 chr9 13614985 13615010 -104247617 + AT_rich Low_complexity Low_complexity 1 25 0 322 250 130 10 chr9 13616189 13616289 -104246338 - L2 LINE L2 -22 3291 3180 287 127 0 36 chr9 13616291 13616346 -104246281 - MLT2B1 LTR ERVL 0 520 468 282 250 0 0 chr9 13616434 13616522 -104246105 + (TA)n Simple_repeat Simple_repeat 2 89 0 1030 209 45 126 chr9 13616522 13616966 -104245661 - MLT2B1 LTR ERVL -40 480 73 552 281 21 68 chr9 13616988 13617269 -104245358 + L2 LINE L2 2212 2479 -835 451 371 38 26 chr9 13617552 13617865 -104244762 + L2 LINE L2 2872 3188 -84 1699 177 7 30 chr9 13618485 13618784 -104243843 - AluJo SINE Alu -20 292 1 3203 56 2 71 chr9 13618822 13619303 -104243324 + LTR7 LTR ERV1 1 448 -2 18764 85 41 18 chr9 13619305 13622224 -104240403 + HERVH LTR ERV1 1 2987 -4726 804 149 20 0 chr9 13622218 13622366 -104240261 + HERVH LTR ERV1 3140 3290 -4423 * 3152 113 4 10 chr9 13622356 13622861 -104239766 + HERVH LTR ERV1 3492 3993 -3720 4063 140 1 3 chr9 13622863 13623526 -104239101 + HERVH LTR ERV1 4488 5149 -2564 1280 120 18 40 chr9 13623527 13623752 -104238875 + HERVH LTR ERV1 5600 5819 -1894 2196 88 59 13 chr9 13623752 13624125 -104238502 + HERVH LTR ERV1 7324 7713 0 3222 54 2 71 chr9 13624125 13624606 -104238021 + LTR7 LTR ERV1 1 448 -2 24 32 0 0 chr9 13624714 13624745 -104237882 + AT_rich Low_complexity Low_complexity 1 31 0 2195 206 40 6 chr9 13624753 13625254 -104237373 - MLT1F1 LTR MaLR 0 567 50 1184 98 10 26 chr9 13625283 13625477 -104237150 - L1PB1 LINE L1 -2 6149 5959 457 105 51 13 chr9 13625572 13625711 -104236916 - L1PBa LINE L1 -5463 1400 1112 2230 84 0 3 chr9 13625711 13626022 -104236605 + AluY SINE Alu 1 310 0 1785 132 0 4 chr9 13626129 13626380 -104236247 - AluSc SINE Alu -59 250 1 207 231 0 46 chr9 13626406 13626471 -104236156 + CT-rich Low_complexity Low_complexity 5 66 0 297 345 98 5 chr9 13626614 13626817 -104235810 - HERV16 LTR ERVL -3422 1574 1353 529 347 10 40 chr9 13626826 13627126 -104235501 - HERV16 LTR ERVL -3760 1236 946 567 230 32 28 chr9 13627130 13627354 -104235273 - MER61D LTR ERV1 0 743 222 765 350 34 11 chr9 13627898 13628366 -104234261 - HERV16 LTR ERVL -4154 842 364 978 294 72 11 chr9 13628689 13629063 -104233564 - LTR16A LTR ERVL -8 442 46 204 300 11 33 chr9 13630584 13630674 -104231953 - MIR SINE MIR -70 192 105 741 256 125 14 chr9 13631063 13631414 -104231213 + L1MC4 LINE L1 7525 7914 -128 34 24 0 0 chr9 13631427 13631468 -104231159 + AT_rich Low_complexity Low_complexity 1 41 0 418 153 66 3 chr9 13631468 13631811 -104230816 + (TA)n Simple_repeat Simple_repeat 1 364 0 257 280 54 0 chr9 13631814 13631907 -104230720 + L1MC4 LINE L1 7929 8026 -16 805 229 82 16 chr9 13633616 13633861 -104228766 + MIR SINE MIR 1 261 -1 199 284 42 63 chr9 13634195 13634290 -104228337 + L2 LINE L2 3140 3232 -40 2861 100 33 113 chr9 13635026 13635634 -104226993 - L1PA12 LINE L1 -16 6152 5594 2401 94 0 0 chr9 13636426 13636733 -104225894 + AluSc SINE Alu 1 307 -2 798 251 125 46 chr9 13636758 13637239 -104225388 - MLT1G3 LTR MaLR -5 537 2 270 136 0 0 chr9 13637374 13637418 -104225209 + (TG)n Simple_repeat Simple_repeat 1 44 0 26 74 0 0 chr9 13638379 13638433 -104224194 + AT_rich Low_complexity Low_complexity 1 54 0 381 317 83 24 chr9 13638445 13638735 -104223892 + L1M4 LINE L1 3869 4175 -1971 298 175 0 0 chr9 13638768 13638831 -104223796 - L1MA7 LINE L1 -4 6287 6225 1743 195 74 18 chr9 13639094 13639529 -104223098 - MLT1C LTR MaLR 0 467 9 203 0 0 36 chr9 13639775 13639803 -104222824 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1832 110 28 62 chr9 13639811 13640101 -104222526 - AluSx SINE Alu -32 280 1 315 277 189 69 chr9 13640104 13640263 -104222364 + MER5B DNA MER1_type 1 178 0 360 252 64 120 chr9 13640697 13640931 -104221696 + L1MC/D LINE L1 5564 5784 -2024 239 226 17 17 chr9 13643835 13643950 -104218677 + (TA)n Simple_repeat Simple_repeat 1 115 0 333 0 0 0 chr9 13643990 13644027 -104218600 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 313 106 39 chr9 13644110 13644289 -104218338 - MIR SINE MIR -55 207 17 22 0 0 0 chr9 13644694 13644716 -104217911 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr9 13645209 13645260 -104217367 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr9 13645293 13645322 -104217305 + AT_rich Low_complexity Low_complexity 1 29 0 213 232 34 147 chr9 13645471 13645648 -104216979 + L3 LINE CR1 1162 1318 -259 573 132 0 11 chr9 13645677 13645768 -104216859 + MLT2B1 LTR ERVL 1 90 -430 * 1152 245 4 4 chr9 13645754 13645995 -104216632 - MLT1A1 LTR MaLR -124 241 1 2501 50 3 0 chr9 13646334 13646634 -104215993 - AluY SINE Alu -7 304 4 733 267 194 22 chr9 13646640 13647231 -104215396 + L2 LINE L2 2519 3313 0 363 278 132 103 chr9 13647521 13647939 -104214688 + MLT1J LTR MaLR 33 462 -49 2291 101 3 0 chr9 13647981 13648287 -104214340 - AluSx SINE Alu -5 307 1 21 0 0 0 chr9 13648321 13648342 -104214285 + AT_rich Low_complexity Low_complexity 1 21 0 334 339 43 21 chr9 13648445 13648631 -104213996 - MIR SINE MIR -14 248 59 246 203 14 14 chr9 13649224 13649293 -104213334 - L1MCa LINE L1 -4353 2073 2005 1676 270 59 26 chr9 13650635 13651127 -104211500 - MLT1H LTR MaLR 0 549 42 565 250 9 0 chr9 13651136 13651252 -104211375 + MLT1H LTR MaLR 238 354 -195 1976 25 0 13 chr9 13651703 13651939 -104210688 - L1PA3 LINE L1 -523 5632 5400 4275 24 20 0 chr9 13651939 13652438 -104210189 + L1PA3 LINE L1 5641 6152 -3 29 28 0 0 chr9 13654089 13654125 -104208502 + AT_rich Low_complexity Low_complexity 1 36 0 427 319 17 21 chr9 13654727 13654968 -104207659 + MER112 DNA MER1_type 20 259 -1 23 0 0 0 chr9 13655149 13655172 -104207455 + AT_rich Low_complexity Low_complexity 1 23 0 297 289 87 13 chr9 13655188 13655347 -104207280 - MIR SINE MIR -63 145 14 290 222 79 0 chr9 13656832 13656895 -104205732 + L2 LINE L2 3203 3270 -2 582 149 11 0 chr9 13657648 13657735 -104204892 - AluJo SINE Alu -23 289 202 279 211 0 92 chr9 13657735 13657811 -104204816 - AluJo SINE Alu -148 154 86 22 35 0 0 chr9 13657877 13657906 -104204721 + AT_rich Low_complexity Low_complexity 1 29 0 259 282 10 58 chr9 13658130 13658233 -104204394 + MIR SINE MIR 97 194 -68 1626 297 74 5 chr9 13658257 13658952 -104203675 - L2 LINE L2 -8 3305 2547 2987 99 30 7 chr9 13658953 13659387 -104203240 - MLT2A1 LTR ERVL 0 444 1 1450 70 0 0 chr9 13659387 13659586 -104203041 - HERVL-A1 LTR ERVL 0 5654 5456 284 122 0 0 chr9 13659586 13659627 -104203000 - MLT2A1 LTR ERVL -403 41 1 1679 282 124 17 chr9 13659628 13660383 -104202244 - L2 LINE L2 -765 2549 1714 1232 242 105 44 chr9 13660396 13660872 -104201755 + MLT1H LTR MaLR 14 518 -31 470 258 96 39 chr9 13660931 13661160 -104201467 - L2 LINE L2 -1607 1707 1466 1792 148 13 17 chr9 13661785 13662083 -104200544 - AluSx SINE Alu -15 297 1 701 297 10 0 chr9 13663116 13663311 -104199316 + L1MCc LINE L1 280 476 -5947 900 283 30 17 chr9 13663787 13664087 -104198540 + L1MCc LINE L1 825 1128 -5295 490 223 16 8 chr9 13664084 13664205 -104198422 + L1ME1 LINE L1 4928 5049 -1097 * 2752 231 41 37 chr9 13664234 13665046 -104197581 + L1ME1 LINE L1 5349 6163 -3 25 51 0 0 chr9 13666329 13666368 -104196259 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr9 13666651 13666674 -104195953 + AT_rich Low_complexity Low_complexity 1 23 0 465 274 75 44 chr9 13666778 13667191 -104195436 + L1ME4a LINE L1 5694 6119 -2 935 247 57 4 chr9 13667610 13667837 -104194790 - MIR SINE MIR -21 241 3 326 160 0 13 chr9 13667885 13667960 -104194667 + (TA)n Simple_repeat Simple_repeat 2 75 0 236 221 50 0 chr9 13667960 13668047 -104194580 + L1MC3 LINE L1 6572 6646 -1139 1983 136 7 3 chr9 13668047 13668348 -104194279 - AluSx SINE Alu -10 302 1 22 0 0 0 chr9 13668351 13668373 -104194254 + AT_rich Low_complexity Low_complexity 1 22 0 2139 118 3 0 chr9 13668380 13668677 -104193950 + AluSx SINE Alu 1 298 -14 2159 112 7 3 chr9 13669162 13669466 -104193161 - AluSx SINE Alu -3 309 5 1783 169 7 10 chr9 13669874 13670159 -104192468 + AluJb SINE Alu 1 285 -23 240 59 0 0 chr9 13670159 13670193 -104192434 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 216 260 13 26 chr9 13671997 13672074 -104190553 + A-rich Low_complexity Low_complexity 3 78 0 299 200 15 0 chr9 13672544 13672609 -104190018 - MLT1E2 LTR MaLR -2 624 559 2021 66 0 8 chr9 13673048 13673306 -104189321 + AluY SINE Alu 53 308 -3 1994 219 92 43 chr9 13673532 13674094 -104188533 - MLT1G1 LTR MaLR 0 595 6 1618 170 12 49 chr9 13676377 13676701 -104185926 - AluJo SINE Alu 0 312 1 21 0 0 0 chr9 13677863 13677884 -104184743 + AT_rich Low_complexity Low_complexity 1 21 0 2240 109 0 0 chr9 13677959 13678261 -104184366 - AluSx SINE Alu 0 312 11 267 276 69 102 chr9 13679566 13679812 -104182815 - MLT1K LTR MaLR -168 420 183 328 298 97 32 chr9 13679920 13680044 -104182583 - L2 LINE L2 0 3272 3141 1089 163 36 5 chr9 13680231 13680427 -104182200 + MER6B DNA MER2_type 9 210 0 323 288 118 66 chr9 13680442 13680609 -104182018 - MIR SINE MIR -37 225 43 1754 184 38 70 chr9 13680609 13681055 -104181572 - MSTB1 LTR MaLR 0 432 1 323 288 118 66 chr9 13681055 13681099 -104181528 - MIR SINE MIR -219 43 3 2154 197 83 26 chr9 13681367 13682207 -104180420 - L1ME1 LINE L1 -313 5853 4972 1303 239 28 0 chr9 13682199 13682517 -104180110 + L1ME1 LINE L1 4649 4975 -1171 * 269 202 48 73 chr9 13683065 13683109 -104179518 - L1ME LINE L1 -536 5634 5590 1737 211 46 30 chr9 13683109 13683569 -104179058 - MLT1C LTR MaLR 0 467 1 269 202 48 73 chr9 13683569 13683648 -104178979 - L1ME LINE L1 -580 5590 5514 300 325 12 6 chr9 13683718 13683887 -104178740 - L1P LINE L1 -727 5424 5255 233 310 0 0 chr9 13684078 13684149 -104178478 + (CA)n Simple_repeat Simple_repeat 1 71 0 256 306 0 10 chr9 13684755 13684853 -104177774 - MLT1I LTR MaLR -8 401 305 368 258 45 15 chr9 13684976 13685108 -104177519 - MLT1I LTR MaLR -271 138 3 1290 193 146 71 chr9 13686241 13686708 -104175919 - MLT1D LTR MaLR -3 502 1 4846 181 14 11 chr9 13687714 13688829 -104173798 - L1MB1 LINE L1 0 6168 5049 1949 169 66 27 chr9 13689645 13689742 -104172885 + L1MA9 LINE L1 5684 5776 -536 276 30 0 0 chr9 13689742 13689775 -104172852 + (CA)n Simple_repeat Simple_repeat 2 34 0 1949 169 66 27 chr9 13689775 13690116 -104172511 + L1MA9 LINE L1 5776 6139 -173 974 164 6 6 chr9 13691685 13691868 -104170759 + L1MA9 LINE L1 6130 6312 0 2055 108 29 0 chr9 13693483 13693761 -104168866 - AluSx SINE Alu -26 286 1 199 355 82 0 chr9 13694173 13694283 -104168344 + L2 LINE L2 3149 3267 -5 706 222 17 0 chr9 13694451 13694627 -104168000 + L1 LINE L1 4472 4650 -1496 3698 125 24 13 chr9 13694628 13695242 -104167385 + L1PA16 LINE L1 5533 6153 -13 739 144 0 0 chr9 13695260 13695371 -104167256 + FLAM_C SINE Alu 1 111 -32 267 93 0 0 chr9 13695372 13695415 -104167212 + (GA)n Simple_repeat Simple_repeat 2 44 0 474 296 17 47 chr9 13695482 13695654 -104166973 - L2 LINE L2 0 3313 3147 651 279 98 41 chr9 13696051 13696367 -104166260 - L2 LINE L2 -171 3142 2809 28 29 0 0 chr9 13698045 13698080 -104164547 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr9 13698310 13698340 -104164287 + AT_rich Low_complexity Low_complexity 1 30 0 316 329 95 30 chr9 13698346 13698577 -104164050 - L2 LINE L2 -43 3270 3025 325 198 25 12 chr9 13698719 13698800 -104163827 - MER103 DNA DNA -41 125 44 189 351 119 22 chr9 13699092 13699226 -104163401 - L2 LINE L2 -607 2707 2561 283 60 16 67 chr9 13699756 13700006 -104162621 + AluY SINE Alu 1 300 -1 293 231 0 0 chr9 13700267 13700332 -104162295 + MIR SINE MIR 59 123 -139 2141 123 0 3 chr9 13700332 13700641 -104161986 - AluSx SINE Alu -3 309 2 2135 110 0 3 chr9 13701654 13701944 -104160683 - AluSg SINE Alu -21 289 1 320 254 30 60 chr9 13702328 13702462 -104160165 + L2 LINE L2 3143 3272 0 197 242 0 48 chr9 13702505 13702567 -104160060 + MIR SINE MIR 191 249 -13 * 242 146 42 0 chr9 13702535 13702583 -104160044 + L2 LINE L2 3263 3312 -1 258 111 89 0 chr9 13702836 13702881 -104159746 + L2 LINE L2 3264 3312 -1 1082 159 10 20 chr9 13703698 13703893 -104158734 + AluJb SINE Alu 120 312 0 1666 247 62 14 chr9 13704002 13704565 -104158062 - L1ME2 LINE L1 -16 6148 5559 1549 203 49 49 chr9 13704570 13705023 -104157604 - MLT1C LTR MaLR -8 459 7 1196 233 62 68 chr9 13705028 13705399 -104157228 - L1ME2 LINE L1 -597 5567 5195 2065 129 6 10 chr9 13705399 13705710 -104156917 - AluSx SINE Alu 0 312 3 1196 233 62 68 chr9 13705710 13706346 -104156281 - L1ME2 LINE L1 -969 5195 4575 40601 35 22 1 chr9 13706608 13712634 -104149993 + L1PA2 LINE L1 1 6154 -1 31 26 0 0 chr9 13712801 13712839 -104149788 + AT_rich Low_complexity Low_complexity 1 38 0 914 182 17 6 chr9 13714065 13714241 -104148386 - MER45A DNA AcHobo 0 178 1 203 326 58 23 chr9 13714869 13714955 -104147672 - L2 LINE L2 -4 3309 3221 285 307 223 5 chr9 13715050 13715252 -104147375 - MIR SINE MIR -16 246 1 266 341 116 51 chr9 13715438 13715852 -104146775 - L2 LINE L2 -402 2912 2472 1931 167 0 3 chr9 13715990 13716301 -104146326 - AluJo SINE Alu -2 310 1 547 199 0 15 chr9 13717300 13717436 -104145191 + (CA)n Simple_repeat Simple_repeat 2 135 0 360 43 0 0 chr9 13720484 13720530 -104142097 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 293 271 41 16 chr9 13721267 13721389 -104141238 - LTR16B LTR ERVL -74 390 266 23 33 0 0 chr9 13722596 13722626 -104140001 + AT_rich Low_complexity Low_complexity 1 30 0 229 263 53 0 chr9 13722930 13722987 -104139640 - MIR SINE MIR -67 141 82 1544 215 26 26 chr9 13723010 13723391 -104139236 + MLT2D LTR ERVL 22 402 -12 417 86 0 0 chr9 13724997 13725055 -104137572 + (TG)n Simple_repeat Simple_repeat 2 59 0 1753 184 52 0 chr9 13725485 13725832 -104136795 - MLT1A1 LTR MaLR 0 365 1 1144 242 38 63 chr9 13726051 13726079 -104136548 + L1MC4 LINE L1 7549 7576 -466 2206 129 7 0 chr9 13726079 13726389 -104136238 + AluSx SINE Alu 1 312 0 1144 242 38 63 chr9 13726389 13726865 -104135762 + L1MC4 LINE L1 7576 8040 -2 200 149 0 90 chr9 13727088 13727155 -104135472 + (TAAAAA)n Simple_repeat Simple_repeat 3 63 0 282 304 10 20 chr9 13727172 13727274 -104135353 + MIR SINE MIR 53 153 -109 1913 112 0 45 chr9 13727756 13728043 -104134584 - AluSx SINE Alu -24 288 15 208 278 241 9 chr9 13728779 13728887 -104133740 - MIR3 SINE MIR -53 155 23 277 304 65 11 chr9 13729160 13729252 -104133375 - L2 LINE L2 -5 3267 3171 296 426 7 7 chr9 13730918 13731066 -104131561 + MIR3 SINE MIR 29 176 -32 1026 168 41 0 chr9 13731606 13731802 -104130825 + MER3 DNA MER1_type 6 209 0 331 120 0 0 chr9 13731759 13731809 -104130818 - MER3 DNA MER1_type -119 90 41 * 552 294 0 19 chr9 13731859 13732019 -104130608 - MER5B DNA MER1_type -21 157 1 335 345 108 14 chr9 13732326 13732474 -104130153 + L2 LINE L2 3107 3268 -4 318 253 11 11 chr9 13732595 13732682 -104129945 + (TG)n Simple_repeat Simple_repeat 1 87 0 339 293 61 0 chr9 13733675 13733774 -104128853 - MIR3 SINE MIR -9 199 95 309 211 45 15 chr9 13734227 13734360 -104128267 + L1M2 LINE L1 2682 2818 -4031 196 243 0 0 chr9 13734367 13734404 -104128223 - MIR SINE MIR -150 112 76 38 39 0 0 chr9 13735201 13735253 -104127374 + AT_rich Low_complexity Low_complexity 1 52 0 438 20 0 0 chr9 13735405 13735456 -104127171 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 261 0 0 0 chr9 13735858 13735887 -104126740 + (CA)n Simple_repeat Simple_repeat 2 30 0 29 47 0 0 chr9 13736032 13736075 -104126552 + AT_rich Low_complexity Low_complexity 1 43 0 3360 202 59 26 chr9 13736086 13736629 -104125998 + L1MC2 LINE L1 4812 5336 -1008 1759 181 3 16 chr9 13736629 13736932 -104125695 + AluJb SINE Alu 1 299 -13 3360 202 59 26 chr9 13736932 13737667 -104124960 + L1MC2 LINE L1 5336 6222 -122 2508 56 13 3 chr9 13737669 13737975 -104124652 + AluY SINE Alu 1 309 -2 21 0 0 0 chr9 13738110 13738131 -104124496 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr9 13738875 13738910 -104123717 + AT_rich Low_complexity Low_complexity 1 35 0 793 284 132 84 chr9 13739402 13740067 -104122560 + L1MEc LINE L1 39 671 -5725 2277 102 0 3 chr9 13740067 13740362 -104122265 + AluSq SINE Alu 1 294 -19 793 284 132 84 chr9 13740362 13741092 -104121535 + L1MEc LINE L1 671 1501 -4895 693 95 11 0 chr9 13741139 13741234 -104121393 - MLT1B LTR MaLR 0 390 295 246 113 75 19 chr9 13741272 13741325 -104121302 - MLT2B1 LTR ERVL 0 520 465 1460 192 112 33 chr9 13741445 13741810 -104120817 - MLT2B1 LTR ERVL -126 394 1 1134 200 26 4 chr9 13741810 13742037 -104120590 - MLT1B LTR MaLR -158 232 1 563 256 73 18 chr9 13742037 13742256 -104120371 + L1MEc LINE L1 1541 1771 -4625 * 2114 291 62 9 chr9 13742250 13742944 -104119683 + L1ME1 LINE L1 25 755 -5641 1130 123 5 37 chr9 13742948 13743135 -104119492 + AluSg/x SINE Alu 117 297 -12 356 170 29 164 chr9 13743137 13743214 -104119413 + L1ME1 LINE L1 764 807 -5589 1556 182 10 40 chr9 13743214 13743510 -104119117 + AluJo SINE Alu 1 287 -25 356 170 29 164 chr9 13743510 13743603 -104119024 + L1ME1 LINE L1 807 911 -5485 1783 286 83 9 chr9 13743664 13744461 -104118166 + L1ME1 LINE L1 1248 2103 -4293 678 204 3 28 chr9 13744475 13744698 -104117929 + MLT1A1 LTR MaLR 1 363 -2 1817 241 39 30 chr9 13744699 13745472 -104117155 + L1ME1 LINE L1 2118 2854 -3361 7001 150 20 16 chr9 13745472 13745752 -104116875 - Tigger3b DNA MER2_type -1797 1231 954 3030 127 79 16 chr9 13745752 13746248 -104116379 - MER1A DNA MER1_type 0 527 1 7001 150 20 16 chr9 13746248 13747192 -104115435 - Tigger3b DNA MER2_type -2074 954 2 6175 224 81 59 chr9 13747193 13747595 -104115032 + L1ME1 LINE L1 2853 3244 -2991 2043 113 17 10 chr9 13747595 13747895 -104114732 + AluSc SINE Alu 1 302 -7 6175 224 81 59 chr9 13747895 13748382 -104114245 + L1ME1 LINE L1 3244 3719 -2516 1677 168 6 56 chr9 13748382 13748704 -104113923 + AluJo SINE Alu 1 306 -6 6175 224 81 59 chr9 13748704 13750652 -104111975 + L1ME1 LINE L1 3719 5789 -446 2599 31 0 0 chr9 13750652 13750946 -104111681 - AluY SINE Alu -17 294 1 6175 224 81 59 chr9 13750946 13751394 -104111233 + L1ME1 LINE L1 5789 6225 -10 319 313 22 30 chr9 13751919 13752053 -104110574 + MIR SINE MIR 15 147 -115 9026 125 32 32 chr9 13753225 13753700 -104108927 + Tigger1 DNA MER2_type 1 475 -1943 936 177 12 0 chr9 13753700 13753864 -104108763 + FAM SINE Alu 3 168 -7 9026 125 32 32 chr9 13753864 13754900 -104107727 + Tigger1 DNA MER2_type 475 1511 -907 1123 129 0 0 chr9 13754900 13755063 -104107564 - AluSg/x SINE Alu 0 312 150 5640 132 21 9 chr9 13755063 13755973 -104106654 + Tigger1 DNA MER2_type 1498 2418 0 195 42 0 0 chr9 13756533 13756557 -104106070 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2140 46 32 18 chr9 13756559 13756839 -104105788 - AluY SINE Alu -27 284 1 247 261 315 0 chr9 13759098 13759190 -104103437 + MIR3 SINE MIR 40 160 -48 210 250 70 60 chr9 13760078 13760178 -104102449 - MIR SINE MIR 0 262 162 * 232 390 71 18 chr9 13760164 13760333 -104102294 - L2 LINE L2 -225 3047 2870 2133 142 0 0 chr9 13761066 13761376 -104101251 + AluSx SINE Alu 1 310 -2 333 203 81 25 chr9 13761445 13761569 -104101058 - MER34C LTR ERV1 0 585 413 668 252 48 60 chr9 13761590 13761912 -104100715 - MER34 LTR ERV1 -184 523 1 205 260 0 0 chr9 13765535 13765585 -104097042 + CT-rich Low_complexity Low_complexity 1 50 0 36 53 0 0 chr9 13765765 13765822 -104096805 + AT_rich Low_complexity Low_complexity 1 57 0 312 286 143 19 chr9 13767600 13767761 -104094866 - MIR SINE MIR -70 192 12 3253 124 49 5 chr9 13767927 13768512 -104094115 + MER4B LTR ERV1 1 779 0 1345 143 27 82 chr9 13768602 13768896 -104093731 + AluJb SINE Alu 29 306 -6 892 255 52 15 chr9 13770274 13770600 -104092027 - MER113 DNA MER1_type? -178 343 6 211 241 76 25 chr9 13770729 13770808 -104091819 - MIR SINE MIR -8 254 172 2285 90 7 3 chr9 13771914 13772214 -104090413 - AluY SINE Alu -10 301 1 459 0 0 0 chr9 13772330 13772381 -104090246 + (TG)n Simple_repeat Simple_repeat 2 52 0 1497 140 93 50 chr9 13772829 13773107 -104089520 - AluSq SINE Alu -16 297 8 1166 248 129 7 chr9 13773134 13773537 -104089090 - MLT1C LTR MaLR -6 461 10 258 325 163 6 chr9 13773869 13774029 -104088598 - MIR3 SINE MIR 0 208 24 21 36 0 0 chr9 13775017 13775045 -104087582 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 13776533 13776557 -104086070 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr9 13777204 13777226 -104085401 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 13777810 13777831 -104084796 + AT_rich Low_complexity Low_complexity 1 21 0 889 170 144 5 chr9 13779837 13780031 -104082596 + MER58A DNA MER1_type 1 221 -3 434 254 66 57 chr9 13781145 13781373 -104081254 + MIR SINE MIR 20 249 -13 21 0 0 0 chr9 13783313 13783334 -104079293 + AT_rich Low_complexity Low_complexity 1 21 0 2040 117 4 4 chr9 13783344 13783665 -104078962 + AluSg SINE Alu 1 321 0 2274 62 3 24 chr9 13784407 13784698 -104077929 + AluY SINE Alu 20 304 -7 304 277 184 15 chr9 13784950 13785156 -104077471 + MIR SINE MIR 14 254 -8 1385 127 142 70 chr9 13785658 13785974 -104076653 - MER44D DNA MER2_type 0 609 1 2184 65 0 0 chr9 13786008 13786269 -104076358 + AluY SINE Alu 35 295 -16 2371 91 3 0 chr9 13786568 13786866 -104075761 - AluSp SINE Alu -12 301 3 1576 162 103 4 chr9 13787837 13788109 -104074518 - AluJb SINE Alu -13 299 1 211 282 42 42 chr9 13788658 13788729 -104073898 - MIR SINE MIR -172 90 20 384 324 39 103 chr9 13789909 13790239 -104072388 + L2 LINE L2 2945 3253 -19 2178 119 14 0 chr9 13791248 13791541 -104071086 - AluSx SINE Alu -15 297 1 22 35 0 0 chr9 13792169 13792198 -104070429 + AT_rich Low_complexity Low_complexity 1 29 0 320 208 52 26 chr9 13793483 13793560 -104069067 - MIR SINE MIR -92 170 92 317 321 109 7 chr9 13793642 13793779 -104068848 - MIR3 SINE MIR -39 169 19 206 378 0 12 chr9 13796549 13796631 -104065996 + MIR SINE MIR 61 141 -121 1427 219 104 9 chr9 13796862 13797351 -104065276 + MLT1F LTR MaLR 5 534 -8 471 336 76 53 chr9 13797353 13797788 -104064839 + MLT1K LTR MaLR 136 580 -8 2227 102 0 0 chr9 13797905 13798242 -104064385 + AluSx SINE Alu 1 312 0 612 146 184 0 chr9 13798472 13798575 -104064052 - FLAM_A SINE Alu -11 122 1 23 33 0 0 chr9 13798968 13798998 -104063629 + AT_rich Low_complexity Low_complexity 1 30 0 231 222 22 0 chr9 13799643 13799688 -104062939 + MIR SINE MIR 30 75 -133 295 252 99 36 chr9 13800077 13800188 -104062439 - MIR SINE MIR -41 221 104 838 173 78 6 chr9 13800423 13800602 -104062025 + LTR47A LTR ERVL 261 452 0 272 256 122 0 chr9 13800967 13801057 -104061570 - MIR SINE MIR -65 197 97 586 245 48 48 chr9 13801423 13801611 -104061016 - MIR SINE MIR -73 189 2 203 318 30 15 chr9 13801631 13801697 -104060930 - L2 LINE L2 -5 3267 3201 774 215 62 23 chr9 13802305 13802482 -104060145 - MER5A DNA MER1_type 0 189 6 217 178 56 22 chr9 13802713 13802803 -104059824 + (TTATA)n Simple_repeat Simple_repeat 4 96 0 243 301 0 27 chr9 13803965 13804038 -104058589 + L2 LINE L2 3238 3308 -5 2297 92 13 3 chr9 13805045 13805350 -104057277 - AluSc SINE Alu -1 308 1 29 28 0 0 chr9 13805623 13805659 -104056968 + AT_rich Low_complexity Low_complexity 1 36 0 314 165 82 57 chr9 13807504 13807624 -104055003 + MLT1F LTR MaLR 261 413 -175 283 127 175 0 chr9 13807646 13807709 -104054918 + MLT1F LTR MaLR 517 590 0 279 215 152 0 chr9 13808362 13808441 -104054186 - MIR SINE MIR -62 146 56 23 0 0 0 chr9 13809009 13809032 -104053595 + AT_rich Low_complexity Low_complexity 1 23 0 291 54 0 0 chr9 13809107 13809144 -104053483 + (TA)n Simple_repeat Simple_repeat 1 37 0 219 150 0 0 chr9 13809381 13809421 -104053206 + (TA)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr9 13809710 13809732 -104052895 + AT_rich Low_complexity Low_complexity 1 22 0 334 86 224 0 chr9 13810035 13810093 -104052534 + MADE1 DNA Mariner 10 80 0 246 333 106 72 chr9 13810095 13810275 -104052352 - MIR3 SINE MIR -3 205 20 24 77 0 0 chr9 13810456 13810508 -104052119 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 13811123 13811145 -104051482 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 25 51 0 0 chr9 13813000 13813039 -104049588 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr9 13815342 13815384 -104047243 + AT_rich Low_complexity Low_complexity 1 42 0 293 337 41 0 chr9 13818508 13818606 -104044021 + L2 LINE L2 3171 3272 0 201 250 0 0 chr9 13818705 13818745 -104043882 + (CA)n Simple_repeat Simple_repeat 1 40 0 242 100 0 0 chr9 13819391 13819431 -104043196 + L1PA3 LINE L1 6113 6152 -3 21 0 0 0 chr9 13819431 13819452 -104043175 + AT_rich Low_complexity Low_complexity 1 21 0 3798 191 73 12 chr9 13819695 13820126 -104042501 + L1MB3 LINE L1 5033 5436 -747 189 0 0 0 chr9 13820126 13820147 -104042480 + (CA)n Simple_repeat Simple_repeat 2 22 0 3798 191 73 12 chr9 13820147 13820805 -104041822 + L1MB3 LINE L1 5436 6175 -8 505 299 0 51 chr9 13821216 13821276 -104041351 + L2 LINE L2 2788 2849 -465 2434 111 28 17 chr9 13821276 13821636 -104040991 + THE1B LTR MaLR 1 364 0 505 299 0 51 chr9 13821636 13821772 -104040855 + L2 LINE L2 2849 2974 -340 758 149 5 155 chr9 13822420 13822614 -104040013 - FRAM SINE Alu -4 172 8 218 217 0 0 chr9 13822783 13822829 -104039798 + A-rich Low_complexity Low_complexity 1 46 0 609 273 24 18 chr9 13822906 13823071 -104039556 - MIR SINE MIR 0 262 97 639 218 77 101 chr9 13823387 13823635 -104038992 + MIR SINE MIR 21 262 0 213 189 0 0 chr9 13823640 13823677 -104038950 + (TGG)n Simple_repeat Simple_repeat 1 37 0 427 278 67 103 chr9 13823797 13823921 -104038706 + L1MC4a LINE L1 5440 5567 -2241 2174 115 0 3 chr9 13823921 13824208 -104038419 + AluSc SINE Alu 1 286 -23 427 278 67 103 chr9 13824208 13824590 -104038037 + L1MC4a LINE L1 5567 5928 -1880 456 241 161 12 chr9 13825100 13825262 -104037365 - MIR SINE MIR -25 237 52 2182 116 33 28 chr9 13825302 13825664 -104036963 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr9 13826025 13826052 -104036575 + AT_rich Low_complexity Low_complexity 1 27 0 219 36 0 0 chr9 13826609 13826637 -104035990 + (CA)n Simple_repeat Simple_repeat 2 29 0 309 281 215 61 chr9 13828106 13828334 -104034293 - L3 LINE CR1 -22 1555 1293 228 405 0 0 chr9 13829054 13829133 -104033494 - MIR SINE MIR -182 80 2 213 274 129 0 chr9 13829211 13829273 -104033354 + MIR SINE MIR 45 114 -148 1887 139 49 9 chr9 13829687 13829815 -104032812 - MER2 DNA MER2_type -7 338 217 360 0 0 0 chr9 13829815 13829855 -104032772 + (TA)n Simple_repeat Simple_repeat 1 40 0 1887 139 49 9 chr9 13829855 13830050 -104032577 - MER2 DNA MER2_type -128 217 2 2169 111 0 10 chr9 13830274 13830571 -104032056 + AluSq SINE Alu 3 296 -17 1787 184 3 3 chr9 13830971 13831270 -104031357 + AluJb SINE Alu 6 304 -8 36 23 0 0 chr9 13831445 13831488 -104031139 + AT_rich Low_complexity Low_complexity 1 43 0 308 281 0 0 chr9 13832430 13832494 -104030133 - L2 LINE L2 0 3272 3209 241 65 65 22 chr9 13836673 13836719 -104025908 - MARNA DNA Mariner -342 244 197 23 101 0 0 chr9 13837569 13837648 -104024979 + AT_rich Low_complexity Low_complexity 1 79 0 276 351 81 9 chr9 13837985 13838096 -104024531 - L2 LINE L2 0 3313 3195 982 349 37 44 chr9 13838198 13838900 -104023727 + L2 LINE L2 2261 2957 -357 22 35 0 0 chr9 13838993 13839022 -104023605 + AT_rich Low_complexity Low_complexity 1 29 0 421 301 75 20 chr9 13839996 13840195 -104022432 + MIR SINE MIR 48 257 -5 204 385 55 9 chr9 13840391 13840500 -104022127 + MIR SINE MIR 36 149 -113 2337 84 0 13 chr9 13841361 13841671 -104020956 - AluSq SINE Alu -7 306 1 2305 156 58 2 chr9 13841855 13842286 -104020341 + L1MB3 LINE L1 5727 6181 -2 326 231 22 0 chr9 13842287 13842378 -104020249 + L1M4 LINE L1 3849 3941 -2205 1939 127 7 10 chr9 13842405 13842705 -104019922 + AluSq SINE Alu 1 299 -14 216 234 0 0 chr9 13842799 13842846 -104019781 + L2 LINE L2 2689 2735 -579 366 216 142 27 chr9 13843434 13843582 -104019045 - MER103 DNA DNA -1 165 1 255 233 14 27 chr9 13846416 13846489 -104016138 + (CATATA)n Simple_repeat Simple_repeat 4 75 0 532 290 126 13 chr9 13846629 13846860 -104015767 + MIR SINE MIR 3 259 -3 708 79 89 0 chr9 13846972 13847073 -104015554 - AluY SINE Alu -186 125 16 1402 85 0 11 chr9 13847073 13847262 -104015365 + AluY SINE Alu 114 300 -11 556 254 130 14 chr9 13847708 13848078 -104014549 - L1M4 LINE L1 -881 5265 4853 28 29 0 0 chr9 13850363 13850398 -104012229 + AT_rich Low_complexity Low_complexity 1 35 0 457 234 49 6 chr9 13851541 13851721 -104010906 + L1M4 LINE L1 5272 5458 -712 233 393 51 8 chr9 13853755 13853872 -104008755 - MIR3 SINE MIR -28 180 59 26 0 0 0 chr9 13854718 13854744 -104007883 + AT_rich Low_complexity Low_complexity 1 26 0 223 212 35 35 chr9 13855396 13855481 -104007146 + GA-rich Low_complexity Low_complexity 1 85 0 26 50 0 0 chr9 13855652 13855692 -104006935 + AT_rich Low_complexity Low_complexity 1 40 0 1840 123 14 14 chr9 13857221 13857498 -104005129 + AluSx SINE Alu 1 277 -35 234 0 0 0 chr9 13857498 13857524 -104005103 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 263 211 19 0 chr9 13859879 13859931 -104002696 + MIR SINE MIR 156 208 -54 293 271 12 35 chr9 13860713 13860798 -104001829 + MIR SINE MIR 111 193 -69 550 279 78 11 chr9 13860826 13861005 -104001622 - MIR SINE MIR -57 205 15 26 0 0 0 chr9 13861344 13861370 -104001257 + AT_rich Low_complexity Low_complexity 1 26 0 320 278 108 41 chr9 13861620 13861814 -104000813 + L1MC4a LINE L1 5866 6072 -1736 23 33 0 0 chr9 13861878 13861908 -104000719 + AT_rich Low_complexity Low_complexity 1 30 0 265 277 9 60 chr9 13862806 13862912 -103999715 - MIR3 SINE MIR -4 204 104 3052 55 15 7 chr9 13863308 13863711 -103998916 + L1PA8 LINE L1 5764 6169 -3 1796 160 0 0 chr9 13863991 13864296 -103998331 + AluJb SINE Alu 1 305 0 224 167 222 14 chr9 13864308 13864380 -103998247 + MIR SINE MIR 174 260 -2 22 0 0 0 chr9 13866145 13866167 -103996460 + AT_rich Low_complexity Low_complexity 1 22 0 293 176 0 0 chr9 13866226 13866277 -103996350 + L1MA5 LINE L1 6024 6074 -226 186 43 0 0 chr9 13866277 13866300 -103996327 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 400 231 135 0 chr9 13866305 13866409 -103996218 - FLAM_A SINE Alu -15 118 1 6110 139 36 10 chr9 13866461 13867715 -103994912 - L1MA4 LINE L1 -7 6497 5202 423 0 0 0 chr9 13867723 13867770 -103994857 + (TG)n Simple_repeat Simple_repeat 2 48 0 8414 220 43 67 chr9 13867782 13870319 -103992308 - L1MA4 LINE L1 -1396 4954 2478 1754 269 17 52 chr9 13870337 13871162 -103991465 - L1MA4 LINE L1 -4466 1885 1094 537 364 47 32 chr9 13871511 13872005 -103990622 - L1MA4 LINE L1 -5780 501 1 1197 96 0 30 chr9 13872008 13872205 -103990422 + L1MA5 LINE L1 6108 6298 -2 414 0 0 0 chr9 13872762 13872808 -103989819 + (CA)n Simple_repeat Simple_repeat 1 46 0 192 77 0 0 chr9 13872808 13872834 -103989793 + (GA)n Simple_repeat Simple_repeat 1 26 0 815 159 8 0 chr9 13873339 13873465 -103989162 + AluSq/x SINE Alu 1 127 -185 23 33 0 0 chr9 13873686 13873716 -103988911 + AT_rich Low_complexity Low_complexity 1 30 0 222 234 33 174 chr9 13875310 13875421 -103987206 + MER5B DNA MER1_type 18 94 -84 248 290 21 65 chr9 13875313 13875406 -103987221 - MER5A DNA MER1_type -22 167 79 1445 203 17 30 chr9 13875421 13875588 -103987039 - AluJo SINE Alu -11 301 138 2263 77 31 0 chr9 13875588 13875875 -103986752 - AluSc SINE Alu -13 296 1 1445 203 17 30 chr9 13875875 13876008 -103986619 - AluJo SINE Alu -174 138 5 222 234 33 174 chr9 13876008 13876080 -103986547 + MER5B DNA MER1_type 94 175 -3 259 344 59 29 chr9 13876273 13876546 -103986081 + L2 LINE L2 2691 2971 -343 1776 169 0 25 chr9 13877194 13877508 -103985119 + AluJb SINE Alu 1 306 -6 185 224 19 19 chr9 13877615 13877722 -103984905 + (TA)n Simple_repeat Simple_repeat 2 108 0 326 301 62 70 chr9 13878791 13879208 -103983419 + L1M3c LINE L1 1195 1529 -1042 582 154 137 0 chr9 13881724 13881841 -103980786 + FLAM_C SINE Alu 1 133 0 3322 160 7 3 chr9 13883058 13883628 -103978999 + L1MB8 LINE L1 5598 6169 -9 2005 143 55 18 chr9 13883996 13884381 -103978246 - L1MB2 LINE L1 -1 6170 5772 237 233 0 0 chr9 13884381 13884471 -103978156 + (TA)n Simple_repeat Simple_repeat 2 91 0 483 172 86 0 chr9 13884475 13884568 -103978059 - L1MB2 LINE L1 -390 5793 5693 239 173 39 19 chr9 13884735 13884787 -103977840 + MER103 DNA DNA 17 69 -97 1065 177 5 30 chr9 13884789 13884987 -103977640 - AluJo SINE Alu 0 312 120 206 32 32 0 chr9 13886379 13886410 -103976217 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 221 250 79 0 chr9 13886798 13886874 -103975753 - MIR SINE MIR -6 256 175 598 197 153 33 chr9 13889416 13889599 -103973028 + MER3 DNA MER1_type 5 209 0 23 33 0 0 chr9 13890673 13890703 -103971924 + AT_rich Low_complexity Low_complexity 1 30 0 294 200 0 50 chr9 13891852 13891912 -103970715 - MER2 DNA MER2_type 0 345 289 1196 170 24 15 chr9 13892093 13892299 -103970328 - MER2 DNA MER2_type -136 209 2 1737 168 7 10 chr9 13892844 13893136 -103969491 + AluJo SINE Alu 1 291 -21 344 289 7 47 chr9 13893771 13893920 -103968707 + L1ME LINE L1 5599 5741 -380 857 117 64 18 chr9 13894234 13894405 -103968222 + Tigger3(Golem) DNA MER2_type 2434 2612 -417 2246 136 53 5 chr9 13894517 13894893 -103967734 + Tigger3(Golem) DNA MER2_type 2596 2989 -40 692 250 96 17 chr9 13894892 13895132 -103967495 + MER77 LTR ERV1 342 600 -5 * 226 204 20 122 chr9 13895200 13895298 -103967329 + MER21A LTR ERV1 680 767 -164 577 311 152 35 chr9 13895517 13895944 -103966683 + L2 LINE L2 2828 3304 -9 348 285 65 8 chr9 13898331 13898454 -103964173 - MLT1E LTR MaLR -457 136 7 312 293 58 16 chr9 13898457 13898648 -103963979 + L1M2 LINE L1 2285 2483 -4366 284 48 24 0 chr9 13898658 13898700 -103963927 + (CA)n Simple_repeat Simple_repeat 1 43 0 232 310 32 25 chr9 13898878 13899036 -103963591 + L1ME1 LINE L1 1892 2050 -4346 * 2386 247 90 15 chr9 13899031 13899806 -103962821 + L1ME1 LINE L1 5305 6144 -91 963 264 214 48 chr9 13899869 13900378 -103962249 + L1ME3 LINE L1 2982 3405 -2810 1781 151 40 4 chr9 13900378 13900656 -103961971 + AluSx SINE Alu 1 288 -24 963 264 214 48 chr9 13900656 13901394 -103961233 + L1ME3 LINE L1 3405 4436 -1779 1948 264 62 39 chr9 13901437 13902714 -103959913 + L1ME3 LINE L1 4873 6184 -47 24 53 0 0 chr9 13903125 13903163 -103959464 + AT_rich Low_complexity Low_complexity 1 38 0 281 278 122 0 chr9 13904466 13904556 -103958071 - L2 LINE L2 -1 3312 3212 480 117 0 0 chr9 13905268 13905345 -103957282 + (TG)n Simple_repeat Simple_repeat 2 78 0 2360 80 6 16 chr9 13905362 13905675 -103956952 - AluSp SINE Alu -3 310 1 3718 200 109 29 chr9 13906165 13906255 -103956372 + Charlie1 DNA MER1_type 1584 1665 -1096 1809 132 20 16 chr9 13906255 13906558 -103956069 + AluJb SINE Alu 1 304 -8 3718 200 109 29 chr9 13906558 13907110 -103955517 + Charlie1 DNA MER1_type 1665 2171 -590 2949 162 32 50 chr9 13907110 13907733 -103954894 + LTR9 LTR ERV1 1 612 0 3718 200 109 29 chr9 13907733 13908169 -103954458 + Charlie1 DNA MER1_type 2171 2750 -11 523 235 38 8 chr9 13908440 13908572 -103954055 + MIR SINE MIR 102 237 -25 207 0 0 0 chr9 13909675 13909698 -103952929 + (A)n Simple_repeat Simple_repeat 1 23 0 241 337 92 31 chr9 13909698 13909861 -103952766 + MIR SINE MIR 20 192 -70 1854 115 0 11 chr9 13911310 13911579 -103951048 - AluSx SINE Alu -2 310 45 878 238 9 48 chr9 13911864 13912091 -103950536 - MER20 DNA MER1_type 0 219 2 31 0 0 0 chr9 13914214 13914245 -103948382 + AT_rich Low_complexity Low_complexity 1 31 0 21 82 0 0 chr9 13914303 13914352 -103948275 + AT_rich Low_complexity Low_complexity 1 49 0 247 270 270 9 chr9 13914548 13914659 -103947968 + MIR3 SINE MIR 42 181 -27 2040 128 20 0 chr9 13915261 13915558 -103947069 + AluSx SINE Alu 2 304 -8 2328 87 0 3 chr9 13917039 13917339 -103945288 + AluSx SINE Alu 1 299 -13 2103 126 0 28 chr9 13917784 13918101 -103944526 + AluSx SINE Alu 5 312 0 306 0 0 0 chr9 13918199 13918233 -103944394 + (CA)n Simple_repeat Simple_repeat 1 34 0 190 207 17 52 chr9 13919855 13919913 -103942714 - L2 LINE L2 -81 3232 3177 2138 135 0 0 chr9 13919941 13920252 -103942375 + AluSx SINE Alu 1 311 -1 184 291 51 13 chr9 13920983 13921062 -103941565 + MIR SINE MIR 48 129 -133 2263 83 0 13 chr9 13921380 13921680 -103940947 + AluSc SINE Alu 1 296 -13 1091 126 126 6 chr9 13921683 13921865 -103940762 + AluSx SINE Alu 1 204 -108 280 296 233 0 chr9 13921942 13922094 -103940533 + MIR SINE MIR 19 203 -59 698 255 142 9 chr9 13922937 13923149 -103939478 - MIR SINE MIR -21 241 2 1026 118 14 91 chr9 13923554 13923684 -103938943 + Tigger7 DNA MER2_type 2384 2492 -95 14144 140 29 6 chr9 13923684 13926048 -103936579 - Tigger1 DNA MER2_type 0 2418 1 1026 118 14 91 chr9 13926048 13926138 -103936489 + Tigger7 DNA MER2_type 2492 2587 0 344 297 31 23 chr9 13926411 13926539 -103936088 - MIR SINE MIR -120 142 14 802 119 108 34 chr9 13926836 13927012 -103935615 + MER53 DNA DNA 1 189 0 441 81 0 0 chr9 13928054 13928116 -103934511 + AluSc SINE Alu 156 217 -92 267 170 0 19 chr9 13928137 13928190 -103934437 + MER53 DNA DNA 138 189 0 324 65 0 0 chr9 13928322 13928368 -103934259 - AluSg/x SINE Alu -81 221 176 408 149 11 11 chr9 13928368 13928455 -103934172 + AluS SINE Alu 220 306 -3 234 343 87 48 chr9 13928639 13928927 -103933700 - L2 LINE L2 -183 3089 2743 2047 120 3 26 chr9 13928927 13929235 -103933392 - AluSx SINE Alu -11 301 1 234 343 87 48 chr9 13929235 13929386 -103933241 - L2 LINE L2 -529 2743 2599 1007 228 65 54 chr9 13929613 13929999 -103932628 + MLT1B LTR MaLR 1 390 0 1501 177 3 57 chr9 13930854 13931171 -103931456 + AluJo SINE Alu 11 310 -2 1559 159 55 14 chr9 13931275 13931564 -103931063 + AluJo SINE Alu 1 301 -11 418 280 58 40 chr9 13931659 13931884 -103930743 + L1MDa LINE L1 2351 2579 -3961 30 0 0 0 chr9 13931933 13931963 -103930664 + AT_rich Low_complexity Low_complexity 1 30 0 607 237 65 38 chr9 13932185 13932371 -103930256 + L1MC5 LINE L1 7727 7917 -44 198 307 243 21 chr9 13933511 13933651 -103928976 - MIR3 SINE MIR -17 191 21 24 0 0 0 chr9 13933744 13933768 -103928859 + AT_rich Low_complexity Low_complexity 1 24 0 2010 124 3 0 chr9 13934395 13934686 -103927941 + AluSp SINE Alu 14 305 -8 306 292 124 7 chr9 13936411 13936548 -103926079 - MIR SINE MIR -48 214 62 23 0 0 0 chr9 13937242 13937265 -103925362 + AT_rich Low_complexity Low_complexity 1 23 0 391 172 103 9 chr9 13937443 13937559 -103925068 + MER69 DNA AcHobo 2400 2526 0 197 185 11 174 chr9 13938436 13938528 -103924099 + L2 LINE L2 3194 3270 -43 987 207 43 55 chr9 13939524 13939852 -103922775 + MER33 DNA MER1_type 1 324 0 21 36 0 0 chr9 13940214 13940242 -103922385 + AT_rich Low_complexity Low_complexity 1 28 0 463 209 49 80 chr9 13940411 13940574 -103922053 + MER34 LTR ERV1 3 160 -382 264 200 88 25 chr9 13940720 13940800 -103921827 + MER34 LTR ERV1 458 542 0 1338 208 47 29 chr9 13940873 13941253 -103921374 + L1ME1 LINE L1 5776 6162 -4 838 130 0 36 chr9 13941670 13941808 -103920819 + AluSq/x SINE Alu 1 133 -179 1967 155 42 11 chr9 13941984 13942338 -103920289 + MLT1A1 LTR MaLR 1 365 0 854 130 62 0 chr9 13942711 13942873 -103919754 - Charlie5 DNA MER1_type 0 2624 2453 21 82 0 0 chr9 13943272 13943321 -103919306 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr9 13943613 13943637 -103918990 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 13943706 13943741 -103918886 + AT_rich Low_complexity Low_complexity 1 35 0 1909 148 89 3 chr9 13944267 13944626 -103918001 + MLT1B LTR MaLR 1 390 0 813 140 7 0 chr9 13944626 13944762 -103917865 + MLT1B-int LTR MaLR 1 137 -1234 205 306 0 20 chr9 13946342 13946440 -103916187 + GA-rich Low_complexity Low_complexity 2 97 0 2130 110 0 0 chr9 13946640 13946958 -103915669 - AluSx SINE Alu 0 312 1 246 62 0 0 chr9 13948656 13948688 -103913939 + (CCCCCA)n Simple_repeat Simple_repeat 1 32 0 29 28 0 0 chr9 13948718 13948754 -103913873 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 13949106 13949128 -103913499 + GC_rich Low_complexity Low_complexity 1 22 0 893 153 16 26 chr9 13949223 13949412 -103913215 - MER53 DNA DNA -1 188 2 420 217 114 39 chr9 13950014 13950194 -103912433 - MER69 DNA AcHobo -19 2507 1 300 308 220 23 chr9 13950200 13950505 -103912122 + L2 LINE L2 2061 2425 -889 296 340 99 21 chr9 13950590 13950731 -103911896 + L2 LINE L2 3096 3247 -25 475 328 0 16 chr9 13952993 13953182 -103909445 + MLT1L LTR MaLR 426 611 -4 235 312 46 0 chr9 13953520 13953629 -103908998 - HAL1 LINE L1 -1641 866 753 256 254 0 14 chr9 13953775 13953846 -103908781 + (TG)n Simple_repeat Simple_repeat 1 70 0 388 165 165 0 chr9 13954005 13954108 -103908519 - MER5C DNA MER1_type 0 324 205 394 212 221 0 chr9 13954242 13954355 -103908272 + MER5A DNA MER1_type 41 178 -11 755 303 77 15 chr9 13954401 13954728 -103907899 + L2 LINE L2 2944 3290 -23 605 227 13 7 chr9 13955185 13955335 -103907292 - L1ME2 LINE L1 -14 6150 6000 913 164 57 53 chr9 13955337 13955581 -103907046 - MER96B DNA MER1_type? -170 247 3 780 256 48 37 chr9 13955597 13955866 -103906761 - MLT1G LTR MaLR -294 296 25 417 346 32 5 chr9 13957238 13957426 -103905201 - LTR16A LTR ERVL -52 398 206 1999 217 113 21 chr9 13957600 13958264 -103904363 + MER50 LTR ERV1 10 734 0 407 317 136 5 chr9 13958779 13958978 -103903649 + MIR SINE MIR 19 243 -19 207 204 0 0 chr9 13958991 13959040 -103903587 + (ATG)n Simple_repeat Simple_repeat 3 51 0 1504 179 0 75 chr9 13959066 13959374 -103903253 - AluJb SINE Alu -27 285 1 271 371 9 0 chr9 13959614 13959719 -103902908 - MIR SINE MIR -139 123 18 201 219 24 0 chr9 13959818 13959859 -103902768 - MER5B DNA MER1_type -136 42 1 21 36 0 0 chr9 13959897 13959925 -103902702 + AT_rich Low_complexity Low_complexity 1 28 0 565 216 0 0 chr9 13960045 13960156 -103902471 + FLAM_A SINE Alu 24 134 -8 440 376 78 9 chr9 13960255 13960473 -103902154 - L1MC4 LINE L1 -17 8025 7793 2303 77 0 35 chr9 13960506 13960819 -103901808 + AluY SINE Alu 1 302 -9 252 146 0 0 chr9 13960824 13960865 -103901762 - AluJ/FLAM SINE Alu -218 84 44 1072 259 52 118 chr9 13960958 13961824 -103900803 - L1MC4 LINE L1 -370 7672 6876 1761 184 16 3 chr9 13961824 13962129 -103900498 - AluJb SINE Alu -3 309 1 1072 259 52 118 chr9 13962129 13962239 -103900388 - L1MC4 LINE L1 -1166 6876 6760 749 334 71 56 chr9 13962733 13963587 -103899040 + L1MEc LINE L1 894 1823 -753 2072 136 0 13 chr9 13963800 13964102 -103898525 + AluSx SINE Alu 9 306 -6 1047 167 46 0 chr9 13964128 13964302 -103898325 + FRAM SINE Alu 1 176 0 317 270 26 37 chr9 13964341 13964530 -103898097 + L1MEc LINE L1 2387 2573 -3642 24 0 0 0 chr9 13964665 13964689 -103897938 + AT_rich Low_complexity Low_complexity 1 24 0 1323 275 102 8 chr9 13964944 13965417 -103897210 - MLT1H LTR MaLR -27 522 6 2523 66 0 0 chr9 13965442 13965743 -103896884 + AluY SINE Alu 1 301 -10 345 243 200 22 chr9 13965750 13965935 -103896692 + L1MEc LINE L1 3033 3250 -2965 383 271 69 24 chr9 13965965 13966256 -103896371 + L1MEc LINE L1 3247 3550 -2665 2088 175 44 14 chr9 13966466 13966901 -103895726 - LOR1b LTR ERV1 -13 448 1 462 297 53 29 chr9 13966952 13967406 -103895221 + L1MEc LINE L1 3828 4292 -1923 629 240 11 66 chr9 13967432 13967719 -103894908 - LTR37B LTR ERV1 0 468 198 446 250 42 7 chr9 13967836 13967980 -103894647 - LTR37B LTR ERV1 -314 154 6 334 217 62 155 chr9 13967988 13968130 -103894497 + L1MEc LINE L1 4320 4429 -1786 1543 184 16 48 chr9 13968130 13968440 -103894187 + AluJo SINE Alu 1 300 -12 334 217 62 155 chr9 13968440 13968555 -103894072 + L1MEc LINE L1 4429 4553 -1662 1496 202 22 0 chr9 13968978 13969255 -103893372 - AluJo SINE Alu -28 284 2 541 182 56 56 chr9 13969306 13969449 -103893178 + FLAM_C SINE Alu 1 143 0 206 303 45 0 chr9 13969501 13969567 -103893060 - MIR SINE MIR 0 262 194 2177 121 0 7 chr9 13969872 13970170 -103892457 + AluSx SINE Alu 3 298 -14 32743 39 4 10 chr9 13970883 13975992 -103886635 - L1PA4 LINE L1 0 6155 1081 559 102 0 0 chr9 13975960 13976072 -103886555 - L1P3 LINE L1 -6066 395 10 * 2229 85 7 3 chr9 13976205 13976498 -103886129 - AluY SINE Alu -17 294 1 443 320 164 3 chr9 13976561 13976873 -103885754 + LTR33A LTR ERVL 142 503 -20 249 283 232 0 chr9 13976989 13977088 -103885539 - L2 LINE L2 0 3313 3192 558 229 0 0 chr9 13977096 13977205 -103885422 + MER81 DNA DNA 1 109 -5 417 292 64 58 chr9 13977248 13977419 -103885208 - L2 LINE L2 -164 3149 2978 489 145 0 0 chr9 13977516 13977585 -103885042 - AluS SINE Alu -239 70 2 1425 114 0 30 chr9 13977588 13977790 -103884837 + AluSc SINE Alu 96 291 -18 351 263 73 15 chr9 13977834 13977971 -103884656 - LTR33 LTR ERVL -135 386 242 1847 152 158 13 chr9 13978179 13978553 -103884074 - MSTA LTR MaLR 0 428 1 184 333 81 0 chr9 13978906 13979005 -103883622 - MIR SINE MIR -75 187 81 483 210 5 15 chr9 13979386 13979591 -103883036 + CT-rich Low_complexity Low_complexity 1 203 0 2172 110 0 0 chr9 13979591 13979872 -103882755 - AluSq SINE Alu -32 281 1 2099 149 0 0 chr9 13980773 13981068 -103881559 - AluSx SINE Alu -13 299 5 24 0 0 0 chr9 13981513 13981537 -103881090 + AT_rich Low_complexity Low_complexity 1 24 0 269 200 86 14 chr9 13981601 13981671 -103880956 + MLT1L LTR MaLR 35 109 -506 1285 231 86 5 chr9 13981704 13982089 -103880538 + LTR40c LTR ERVL 44 459 -6 431 234 52 120 chr9 13982116 13982424 -103880203 + MLT1J LTR MaLR 124 410 -101 1674 184 3 20 chr9 13982487 13982791 -103879836 - AluJo SINE Alu -13 299 1 1222 211 0 0 chr9 13982850 13983058 -103879569 - AluJb SINE Alu -22 290 83 1797 180 7 10 chr9 13983107 13983407 -103879220 - AluJo SINE Alu -13 299 1 326 258 43 0 chr9 13984597 13984690 -103877937 - MLT1G1 LTR MaLR -498 97 1 2366 99 7 0 chr9 13985376 13985679 -103876948 + AluSg SINE Alu 1 305 -5 348 282 92 45 chr9 13985784 13986029 -103876598 + HAL1 LINE L1 3 317 -2190 324 0 0 0 chr9 13986063 13986099 -103876528 + (TG)n Simple_repeat Simple_repeat 2 37 0 1062 84 35 0 chr9 13986103 13986245 -103876382 - AluSg/x SINE Alu -25 287 141 322 120 0 0 chr9 13986245 13986295 -103876332 - Alu SINE Alu -252 50 1 429 293 75 16 chr9 13986299 13986487 -103876140 + HAL1 LINE L1 349 547 -1960 1419 268 40 21 chr9 13986750 13987172 -103875455 - LTR16A LTR ERVL -2 448 19 225 225 155 14 chr9 13987174 13987245 -103875382 + HAL1 LINE L1 738 818 -1689 585 305 24 20 chr9 13987286 13987503 -103875124 - MLT1I LTR MaLR -121 288 91 290 301 58 46 chr9 13987528 13987701 -103874926 - MLT1H1 LTR MaLR -29 526 352 1314 275 110 5 chr9 13987749 13988378 -103874249 + HAL1 LINE L1 1116 1810 -697 383 224 97 90 chr9 13988509 13988750 -103873877 + HAL1 LINE L1 2104 2349 -158 2684 94 11 0 chr9 13988750 13989110 -103873517 - THE1B LTR MaLR 0 364 1 383 224 97 90 chr9 13989110 13989136 -103873491 + HAL1 LINE L1 2349 2373 -134 319 200 0 0 chr9 13989137 13989202 -103873425 + MLT1K LTR MaLR 488 552 -36 181 206 0 132 chr9 13989297 13989365 -103873262 - MER5A DNA MER1_type -114 75 17 * 202 330 0 0 chr9 13989304 13989366 -103873261 + MER5A DNA MER1_type 116 188 -1 2090 254 35 15 chr9 13990034 13990577 -103872050 - MLT1H1 LTR MaLR -1 554 1 1309 193 68 11 chr9 13990678 13990943 -103871684 + AluJb SINE Alu 9 288 -24 21 36 0 0 chr9 13993027 13993055 -103869572 + AT_rich Low_complexity Low_complexity 1 28 0 238 167 17 17 chr9 13993698 13993758 -103868869 + (TA)n Simple_repeat Simple_repeat 1 60 0 384 273 230 25 chr9 13993926 13993949 -103868678 + MIR SINE MIR 4 21 -241 1384 208 67 18 chr9 13993949 13994276 -103868351 - MER2 DNA MER2_type 0 344 2 384 273 230 25 chr9 13994276 13994413 -103868214 + MIR SINE MIR 21 197 -65 500 282 141 46 chr9 13994419 13994660 -103867967 - LTR41 LTR ERVL -170 603 340 662 0 13 0 chr9 13994670 13994748 -103867879 + (TATTG)n Simple_repeat Simple_repeat 3 81 0 918 190 40 0 chr9 13994759 13994933 -103867694 - LTR41 LTR ERVL -590 183 3 290 222 0 0 chr9 13994940 13994994 -103867633 + MIR SINE MIR 203 256 -6 456 287 127 74 chr9 13995046 13995290 -103867337 - L1ME4a LINE L1 -210 5911 5681 783 157 0 0 chr9 13995290 13995411 -103867216 - FLAM_C SINE Alu -12 121 1 456 287 127 74 chr9 13995411 13995692 -103866935 - L1ME4a LINE L1 -440 5681 5358 8843 183 29 22 chr9 13996040 13996625 -103866002 + L1 LINE L1 2710 3289 -2857 1717 164 11 7 chr9 13996625 13996905 -103865722 + AluJb SINE Alu 1 281 -31 8843 183 29 22 chr9 13996905 13998245 -103864382 + L1 LINE L1 3289 4649 -1497 1143 163 15 0 chr9 13998246 13998448 -103864179 - L1 LINE L1 -1268 4878 4674 319 203 85 0 chr9 13998448 13998566 -103864061 - L1ME4a LINE L1 -19 6102 5975 21 36 0 0 chr9 13998658 13998686 -103863941 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 13998756 13998786 -103863841 + AT_rich Low_complexity Low_complexity 1 30 0 2119 138 0 0 chr9 13998790 13999081 -103863546 - AluSx SINE Alu -21 291 1 545 311 42 0 chr9 13999128 13999321 -103863306 - L1ME LINE L1 -436 5685 5485 413 310 59 31 chr9 13999482 13999737 -103862890 - L1 LINE L1 -1499 4647 4386 212 261 171 57 chr9 13999827 13999915 -103862712 + MIR SINE MIR 1 98 -164 964 240 257 7 chr9 13999923 14000335 -103862292 + LTR33 LTR ERVL 3 517 -4 1895 136 13 19 chr9 14001476 14001785 -103860842 + AluSx SINE Alu 1 307 -5 477 135 0 0 chr9 14002637 14002726 -103859901 + L1MA4A LINE L1 6207 6295 -8 1618 192 28 0 chr9 14002916 14003203 -103859424 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr9 14003344 14003374 -103859253 + AT_rich Low_complexity Low_complexity 1 30 0 2346 84 0 3 chr9 14004167 14004463 -103858164 - AluY SINE Alu -16 295 1 27 0 0 0 chr9 14004467 14004494 -103858133 + AT_rich Low_complexity Low_complexity 1 27 0 683 249 110 74 chr9 14004861 14005132 -103857495 - L1 LINE L1 -1984 4162 3902 13794 141 16 36 chr9 14005132 14006935 -103855692 - Tigger1 DNA MER2_type -1 2417 580 2228 100 3 0 chr9 14006935 14007226 -103855401 - AluSq SINE Alu -21 292 1 13794 141 16 36 chr9 14007226 14007274 -103855353 - Tigger1 DNA MER2_type -1838 580 533 1749 178 3 3 chr9 14007274 14007572 -103855055 - AluJo SINE Alu -9 303 6 13794 141 16 36 chr9 14007572 14008184 -103854443 - Tigger1 DNA MER2_type -1885 533 2 683 249 110 74 chr9 14008184 14008450 -103854177 - L1 LINE L1 -2244 3902 3606 21 36 0 0 chr9 14008450 14008478 -103854149 + AT_rich Low_complexity Low_complexity 1 28 0 2005 131 35 35 chr9 14008507 14008880 -103853747 - THE1C LTR MaLR -2 373 1 803 230 20 5 chr9 14009293 14009497 -103853130 + L1M4 LINE L1 2670 2876 -3270 21326 34 8 0 chr9 14009531 14012913 -103849714 - L1PA4 LINE L1 -3 6152 2748 15408 54 6 1 chr9 14012913 14014891 -103847736 + L1PA4 LINE L1 766 2751 -3395 25 31 0 0 chr9 14015069 14015101 -103847526 + AT_rich Low_complexity Low_complexity 1 32 0 209 244 158 12 chr9 14015357 14015439 -103847188 + MIR SINE MIR 150 243 -19 27 73 0 0 chr9 14015533 14015588 -103847039 + AT_rich Low_complexity Low_complexity 1 55 0 458 270 31 75 chr9 14015594 14015820 -103846807 + MIR SINE MIR 47 262 0 23 78 0 0 chr9 14017289 14017340 -103845287 + AT_rich Low_complexity Low_complexity 1 51 0 1582 193 30 7 chr9 14017448 14017749 -103844878 + AluJo SINE Alu 3 310 -2 362 141 0 26 chr9 14017754 14017832 -103844795 + (GGA)n Simple_repeat Simple_repeat 3 78 0 31 44 0 0 chr9 14018713 14018758 -103843869 + AT_rich Low_complexity Low_complexity 1 45 0 473 276 63 16 chr9 14018921 14019048 -103843579 - MER5B DNA MER1_type 0 178 46 1553 173 14 11 chr9 14019050 14019333 -103843294 - L1MC1 LINE L1 -4 6329 6046 2308 113 0 0 chr9 14019340 14019651 -103842976 - AluSq SINE Alu -2 311 1 341 327 129 25 chr9 14020006 14020088 -103842539 + MIR SINE MIR 28 100 -162 2353 92 3 3 chr9 14020088 14020393 -103842234 - AluY SINE Alu -6 305 1 341 327 129 25 chr9 14020393 14020512 -103842115 + MIR SINE MIR 100 250 -12 21 36 0 0 chr9 14023145 14023173 -103839454 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr9 14023879 14023899 -103838728 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1717 136 38 4 chr9 14023905 14024169 -103838458 - AluSx SINE Alu -39 273 1 323 354 9 9 chr9 14025287 14025400 -103837227 + MIR SINE MIR 21 133 -129 2139 136 3 0 chr9 14025997 14026305 -103836322 - AluSq SINE Alu -4 309 1 271 203 87 14 chr9 14027048 14027117 -103835510 + MIR3 SINE MIR 130 203 -5 1188 131 11 0 chr9 14028536 14028719 -103833908 - AluSg/x SINE Alu -6 306 122 1894 128 30 20 chr9 14028928 14029232 -103833395 + AluSc SINE Alu 1 307 -2 2006 190 53 25 chr9 14029584 14030073 -103832554 + MLT1D LTR MaLR 1 503 -2 238 176 0 0 chr9 14030288 14030339 -103832288 + L1MA4A LINE L1 6005 6055 -248 281 250 62 91 chr9 14030734 14030942 -103831685 - MLT1L LTR MaLR -74 541 235 1803 175 0 3 chr9 14031843 14032140 -103830487 - AluJb SINE Alu -14 298 3 1020 207 87 103 chr9 14032378 14032734 -103829893 + MER39 LTR ERV1 5 522 -185 2240 98 0 25 chr9 14032734 14033051 -103829576 + AluY SINE Alu 3 311 0 1020 207 87 103 chr9 14033051 14033235 -103829392 + MER39 LTR ERV1 522 707 0 197 236 73 55 chr9 14033359 14033414 -103829213 + L2 LINE L2 3204 3259 -54 186 350 100 17 chr9 14033408 14033528 -103829099 + MIR SINE MIR 46 175 -87 * 442 275 36 0 chr9 14033654 14033792 -103828835 + MIR3 SINE MIR 58 200 -8 22 35 0 0 chr9 14036389 14036418 -103826209 + AT_rich Low_complexity Low_complexity 1 29 0 633 250 132 23 chr9 14036949 14037169 -103825458 + MIR SINE MIR 9 252 -10 303 298 26 40 chr9 14037165 14037316 -103825311 - MIR SINE MIR -108 154 6 * 585 224 170 0 chr9 14037316 14037463 -103825164 + MER5A DNA MER1_type 10 181 -8 234 0 0 0 chr9 14037708 14037734 -103824893 + (TA)n Simple_repeat Simple_repeat 2 27 0 1511 134 25 109 chr9 14037749 14038070 -103824557 - AluYb8 SINE Alu -24 294 1 426 297 95 18 chr9 14038210 14038432 -103824195 + MIR SINE MIR 13 251 -11 23 0 0 0 chr9 14039658 14039681 -103822946 + AT_rich Low_complexity Low_complexity 1 23 0 2856 157 4 6 chr9 14040323 14040825 -103821802 - L1MA3 LINE L1 -5 6300 5800 564 209 68 31 chr9 14041152 14041315 -103821312 + MER104 DNA Tc2 2 170 -10 249 139 0 0 chr9 14041430 14041473 -103821154 + (A)n Simple_repeat Simple_repeat 1 43 0 201 191 0 24 chr9 14042509 14042551 -103820076 + (CATA)n Simple_repeat Simple_repeat 4 44 0 427 176 80 22 chr9 14042566 14042730 -103819897 + MER104 DNA Tc2 3 177 -3 609 276 102 18 chr9 14042739 14042964 -103819663 - MIR SINE MIR -1 261 18 605 283 102 0 chr9 14043732 14043919 -103818708 + MIR SINE MIR 54 259 -3 765 256 81 18 chr9 14044547 14044770 -103817857 + MIR SINE MIR 14 250 -12 1060 234 83 18 chr9 14045597 14045935 -103816692 + L1ME3 LINE L1 5802 6161 -1 219 36 0 0 chr9 14047252 14047280 -103815347 + (TG)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr9 14047397 14047418 -103815209 + AT_rich Low_complexity Low_complexity 1 21 0 362 305 37 24 chr9 14048138 14048201 -103814426 - MER5B DNA MER1_type -3 175 114 1708 142 0 58 chr9 14048201 14048510 -103814117 + AluSx SINE Alu 1 291 -21 362 305 37 24 chr9 14048510 14048610 -103814017 - MER5B DNA MER1_type -64 114 10 1071 164 11 0 chr9 14048627 14048810 -103813817 - MER5A DNA MER1_type -4 185 1 2097 122 7 0 chr9 14049237 14049531 -103813096 - AluSx SINE Alu -16 296 1 1693 186 58 35 chr9 14050016 14050393 -103812234 + MLT1B LTR MaLR 1 386 -4 400 238 77 71 chr9 14051035 14051203 -103811424 - MIR SINE MIR -43 219 51 374 303 97 7 chr9 14052225 14052370 -103810257 - MIR3 SINE MIR -5 203 46 299 358 24 12 chr9 14052894 14053059 -103809568 - MIR SINE MIR -5 257 91 * 338 290 193 17 chr9 14053050 14053226 -103809401 + MIR SINE MIR 49 255 -7 2165 149 3 32 chr9 14053359 14053734 -103808893 + THE1B LTR MaLR 1 364 0 11196 112 6 0 chr9 14053735 14055303 -103807324 + THE1B-int LTR MaLR 3 1580 0 2380 126 3 29 chr9 14055303 14055677 -103806950 + THE1B LTR MaLR 1 364 0 1961 157 0 10 chr9 14055915 14056220 -103806407 - AluSx SINE Alu -10 302 1 330 288 45 9 chr9 14056243 14056354 -103806273 + L2 LINE L2 3198 3312 -1 21 36 0 0 chr9 14058059 14058087 -103804540 + AT_rich Low_complexity Low_complexity 1 28 0 414 313 22 89 chr9 14058204 14058428 -103804199 + MIR SINE MIR 12 220 -42 12586 170 13 16 chr9 14059176 14062058 -103800569 + L1PA14 LINE L1 2800 5778 -383 2537 64 0 3 chr9 14062058 14062369 -103800258 + AluY SINE Alu 1 310 -1 12586 170 13 16 chr9 14062369 14062749 -103799878 + L1PA14 LINE L1 5778 6158 -3 675 226 59 23 chr9 14062985 14063206 -103799421 - MER106A DNA MER1_type -7 229 1 21 0 0 0 chr9 14064431 14064452 -103798175 + AT_rich Low_complexity Low_complexity 1 21 0 199 294 43 33 chr9 14065889 14065981 -103796646 + MIR SINE MIR 148 240 -22 252 360 13 27 chr9 14066266 14066416 -103796211 - MIR3 SINE MIR -41 167 20 276 346 58 10 chr9 14066480 14066584 -103796043 - L2 LINE L2 -9 3304 3196 210 171 26 26 chr9 14066898 14066974 -103795653 + GA-rich Low_complexity Low_complexity 2 77 0 1279 200 35 46 chr9 14066991 14067276 -103795351 + AluJo SINE Alu 1 282 -30 315 49 0 0 chr9 14067281 14067322 -103795305 + (GA)n Simple_repeat Simple_repeat 2 42 0 374 271 97 26 chr9 14068799 14068954 -103793673 - MIR SINE MIR -44 218 53 24 32 0 0 chr9 14069708 14069739 -103792888 + AT_rich Low_complexity Low_complexity 1 31 0 476 111 33 11 chr9 14069757 14069847 -103792780 - L1PA4 LINE L1 -3 6152 6061 2835 159 4 6 chr9 14070334 14070836 -103791791 + L1MA3 LINE L1 5800 6300 -5 23 0 0 0 chr9 14071480 14071503 -103791124 + AT_rich Low_complexity Low_complexity 1 23 0 1037 224 85 4 chr9 14072090 14072349 -103790278 + MER63 DNA MER1_type 783 1062 0 2314 81 0 42 chr9 14072388 14072697 -103789930 + AluSq SINE Alu 1 296 -17 187 276 35 0 chr9 14072832 14072890 -103789737 - L2 LINE L2 0 3313 3254 263 361 33 8 chr9 14073317 14073439 -103789188 - MIR SINE MIR -77 185 61 12234 36 4 0 chr9 14074211 14076327 -103786300 - L1PA4 LINE L1 -156 5999 3880 4973 58 6 6 chr9 14076597 14077247 -103785380 - L1PA8 LINE L1 0 6172 5523 24 32 0 0 chr9 14077341 14077372 -103785255 + AT_rich Low_complexity Low_complexity 1 31 0 250 75 0 0 chr9 14078726 14078766 -103783861 - AluSp SINE Alu -2 300 261 1558 68 5 0 chr9 14078766 14078958 -103783669 - AluSp SINE Alu -120 193 1 674 281 110 26 chr9 14079335 14079680 -103782947 + MLT1I LTR MaLR 16 389 -20 264 255 0 0 chr9 14079703 14079754 -103782873 + L2 LINE L2 3218 3268 -4 358 252 238 14 chr9 14080337 14080484 -103782143 - MIR SINE MIR -1 261 82 1364 94 59 10 chr9 14080550 14080753 -103781874 - L1PA8 LINE L1 -6 6166 5954 23 33 0 0 chr9 14081044 14081074 -103781553 + AT_rich Low_complexity Low_complexity 1 30 0 21 89 0 0 chr9 14081530 14081586 -103781041 + AT_rich Low_complexity Low_complexity 1 56 0 227 209 0 0 chr9 14082327 14082370 -103780257 - MIR SINE MIR -57 151 109 270 299 0 0 chr9 14082445 14082522 -103780105 - MIR SINE MIR -102 160 84 301 215 28 37 chr9 14084181 14084288 -103778339 - L1ME4a LINE L1 -70 6051 5946 271 200 0 0 chr9 14084478 14084533 -103778094 + L1ME3A LINE L1 6111 6165 -5 348 315 66 11 chr9 14084560 14084741 -103777886 - L1ME4a LINE L1 -293 5828 5638 211 263 95 21 chr9 14085001 14085096 -103777531 - L2 LINE L2 -4 3268 3167 234 257 57 14 chr9 14085168 14085238 -103777389 + MIR SINE MIR 121 193 -69 239 344 64 8 chr9 14086755 14086880 -103775747 + MIR SINE MIR 57 188 -74 192 318 16 16 chr9 14088128 14088191 -103774436 - MIR SINE MIR -197 65 3 2409 87 3 3 chr9 14088237 14088546 -103774081 + AluSg SINE Alu 2 310 0 200 350 12 25 chr9 14088673 14088753 -103773874 + L2 LINE L2 2624 2702 -612 23 0 0 0 chr9 14089022 14089045 -103773582 + AT_rich Low_complexity Low_complexity 1 23 0 520 252 76 0 chr9 14089533 14089664 -103772963 + MER69A DNA AcHobo 37 177 0 417 268 51 51 chr9 14090862 14091019 -103771608 - MIR SINE MIR -72 190 34 316 251 158 42 chr9 14091358 14091573 -103771054 + L1ME4a LINE L1 5725 5964 -157 216 0 0 0 chr9 14091580 14091604 -103771023 + (TG)n Simple_repeat Simple_repeat 1 24 0 359 298 147 18 chr9 14091710 14091935 -103770692 + MIR SINE MIR 7 260 -2 1543 162 68 11 chr9 14092151 14092429 -103770198 - AluJb SINE Alu -8 304 11 1773 154 17 7 chr9 14092876 14093174 -103769453 + LTR1 LTR ERV1 485 785 0 196 333 31 21 chr9 14093326 14093422 -103769205 - L2 LINE L2 -419 2895 2799 275 333 81 0 chr9 14093442 14093565 -103769062 - MIR SINE MIR -77 185 53 26 0 0 0 chr9 14093807 14093833 -103768794 + AT_rich Low_complexity Low_complexity 1 26 0 813 45 63 0 chr9 14093833 14093944 -103768683 - L1PA4 LINE L1 -3 6152 6035 222 37 0 0 chr9 14093944 14093971 -103768656 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 240 111 0 0 chr9 14094510 14094546 -103768081 + (CTAA)n Simple_repeat Simple_repeat 1 36 0 324 70 0 0 chr9 14096189 14096232 -103766395 + (TG)n Simple_repeat Simple_repeat 2 44 0 396 0 0 0 chr9 14097377 14097421 -103765206 + (TA)n Simple_repeat Simple_repeat 2 45 0 333 0 0 0 chr9 14097422 14097459 -103765168 + (CA)n Simple_repeat Simple_repeat 1 37 0 2093 117 3 0 chr9 14097987 14098319 -103764308 + AluSx SINE Alu 1 333 0 348 254 108 39 chr9 14098439 14098569 -103764058 + MIR SINE MIR 16 154 -108 680 224 13 19 chr9 14098647 14098803 -103763824 + MER5B DNA MER1_type 24 178 0 209 329 29 0 chr9 14100272 14100342 -103762285 - L2 LINE L2 -1 3271 3200 302 329 48 27 chr9 14100400 14100546 -103762081 + MIR SINE MIR 57 205 -57 246 224 0 0 chr9 14100861 14100910 -103761717 + GA-rich Low_complexity Low_complexity 2 50 0 810 231 23 0 chr9 14101011 14101184 -103761443 + MER45A DNA AcHobo 2 178 0 398 235 110 29 chr9 14101918 14101931 -103760696 - L3 LINE CR1 -159 1418 1407 2246 120 0 0 chr9 14101931 14102230 -103760397 - AluSx SINE Alu -8 304 6 398 235 110 29 chr9 14102230 14102352 -103760275 - L3 LINE CR1 -170 1407 1272 182 367 0 62 chr9 14103536 14103664 -103758963 - MIR SINE MIR -120 142 23 32 0 0 0 chr9 14104006 14104038 -103758589 + AT_rich Low_complexity Low_complexity 1 32 0 311 261 54 9 chr9 14104994 14105105 -103757522 + MIR SINE MIR 147 262 0 265 303 91 45 chr9 14105786 14105918 -103756709 - MIR3 SINE MIR -38 170 33 991 282 4 20 chr9 14105999 14106251 -103756376 - MIR SINE MIR -10 252 5 198 71 0 0 chr9 14108736 14108764 -103753863 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 21 82 0 0 chr9 14110119 14110168 -103752459 + AT_rich Low_complexity Low_complexity 1 49 0 891 313 36 48 chr9 14113027 14113420 -103749207 + L3 LINE CR1 983 1370 -207 685 233 138 35 chr9 14113562 14113794 -103748833 - L2 LINE L2 0 3313 3058 418 263 53 7 chr9 14114394 14114546 -103748081 - MLT1J LTR MaLR -4 507 349 261 366 52 22 chr9 14114735 14114869 -103747758 - MIR SINE MIR -55 153 16 287 267 47 12 chr9 14117128 14117214 -103745413 - MIR3 SINE MIR -9 199 111 348 24 0 0 chr9 14117919 14117960 -103744667 + (CA)n Simple_repeat Simple_repeat 1 41 0 2075 85 37 0 chr9 14119831 14120133 -103742494 - AluSg SINE Alu 0 312 1 448 217 273 0 chr9 14120708 14120851 -103741776 + MER5A DNA MER1_type 7 188 -1 269 26 26 0 chr9 14121067 14121105 -103741522 + (CA)n Simple_repeat Simple_repeat 1 39 0 342 338 164 17 chr9 14121124 14121355 -103741272 - L2 LINE L2 -3 3310 3046 311 332 111 29 chr9 14121623 14121903 -103740724 + LTR16C LTR ERVL 189 491 0 1282 261 155 34 chr9 14121905 14122470 -103740157 - L2 LINE L2 -266 3047 2414 368 314 84 26 chr9 14122744 14122970 -103739657 - MIR SINE MIR -10 252 14 1752 162 26 13 chr9 14123192 14123500 -103739127 - AluJb SINE Alu 0 312 1 197 330 55 118 chr9 14124499 14124950 -103737677 - L2 LINE L2 -14 3258 2836 892 215 0 0 chr9 14125074 14125237 -103737390 - FRAM SINE Alu -3 163 1 1638 105 149 0 chr9 14125266 14125514 -103737113 - AluSx SINE Alu -16 286 2 816 152 0 0 chr9 14125526 14125651 -103736976 - FLAM_C SINE Alu -8 125 1 32 57 0 0 chr9 14125882 14125935 -103736692 + AT_rich Low_complexity Low_complexity 1 53 0 256 306 98 27 chr9 14126522 14126683 -103735944 + MER5A DNA MER1_type 1 181 -8 574 183 179 0 chr9 14126807 14126959 -103735668 + MER5A DNA MER1_type 4 189 0 755 265 115 0 chr9 14126967 14127167 -103735460 + MER58A DNA MER1_type 1 223 -1 2212 123 3 0 chr9 14127969 14128277 -103734350 + AluSx SINE Alu 1 309 -3 771 255 21 65 chr9 14128388 14128448 -103734179 + LTR16C LTR ERVL 209 270 -221 2296 96 7 3 chr9 14128448 14128749 -103733878 - AluSc SINE Alu -7 302 1 771 255 21 65 chr9 14128749 14128977 -103733650 + LTR16C LTR ERVL 270 484 -7 1292 238 110 42 chr9 14128977 14129476 -103733151 + MLT1F LTR MaLR 1 593 0 533 357 75 27 chr9 14129923 14130324 -103732303 - MLT1K LTR MaLR -162 426 7 675 238 61 0 chr9 14131568 14131732 -103730895 - MER69A DNA AcHobo 0 177 4 634 295 45 37 chr9 14131938 14132182 -103730445 + MIR SINE MIR 17 262 0 1632 212 21 9 chr9 14132467 14132891 -103729736 + L1M4 LINE L1 4412 4840 -1306 21 36 0 0 chr9 14133072 14133100 -103729527 + AT_rich Low_complexity Low_complexity 1 28 0 2071 175 31 44 chr9 14133916 14134368 -103728259 - LTR47A LTR ERVL -6 446 1 220 355 125 5 chr9 14134382 14134582 -103728045 - L2 LINE L2 -530 2784 2561 1140 250 68 33 chr9 14135017 14135594 -103727033 - L1MC5 LINE L1 -35 7926 7330 564 247 38 59 chr9 14135642 14135828 -103726799 + MER20 DNA MER1_type 29 210 -9 15492 211 17 18 chr9 14135972 14141132 -103721495 - L1PA15 LINE L1 -13 6803 1221 2316 103 7 0 chr9 14141132 14141434 -103721193 - AluY SINE Alu -7 304 1 15492 211 17 18 chr9 14141434 14142655 -103719972 - L1PA15 LINE L1 -5595 1221 1 453 129 10 40 chr9 14142665 14142766 -103719861 - L1MC5 LINE L1 -784 7177 7080 359 326 52 7 chr9 14143475 14143610 -103719017 - MLT1K LTR MaLR -391 197 57 183 335 150 17 chr9 14144838 14145011 -103717616 - L3b LINE CR1 -102 1481 1286 885 307 69 10 chr9 14145324 14145739 -103716888 + LTR16A LTR ERVL 1 442 -15 1133 271 44 53 chr9 14145755 14146208 -103716419 + HERV16 LTR ERVL 1 449 -4547 357 304 35 8 chr9 14146360 14146537 -103716090 + LTR16A1 LTR ERVL 33 211 -239 243 188 0 0 chr9 14146919 14146967 -103715660 + CT-rich Low_complexity Low_complexity 5 52 0 330 300 158 0 chr9 14147392 14147512 -103715115 - MIR3 SINE MIR -39 169 31 24 32 0 0 chr9 14147598 14147629 -103714998 + AT_rich Low_complexity Low_complexity 1 31 0 212 216 0 74 chr9 14147747 14147895 -103714732 + CT-rich Low_complexity Low_complexity 2 138 0 410 315 52 4 chr9 14149274 14149506 -103713121 - L1ME4a LINE L1 -276 5845 5603 291 366 91 0 chr9 14150255 14150441 -103712186 + MIR SINE MIR 60 262 0 223 283 17 17 chr9 14150698 14150758 -103711869 + MIR3 SINE MIR 97 156 -52 2087 113 55 0 chr9 14150865 14151157 -103711470 + AluSx SINE Alu 1 308 -4 22 0 0 0 chr9 14151193 14151215 -103711412 + AT_rich Low_complexity Low_complexity 1 22 0 1444 194 132 52 chr9 14151587 14152051 -103710576 + MLT1D LTR MaLR 5 505 0 24 0 0 0 chr9 14154291 14154315 -103708312 + AT_rich Low_complexity Low_complexity 1 24 0 324 315 8 8 chr9 14154607 14154734 -103707893 + MLT1L LTR MaLR 118 244 -371 387 293 103 8 chr9 14154785 14155038 -103707589 + MLT1L LTR MaLR 331 607 -8 351 0 0 0 chr9 14155170 14155209 -103707418 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 296 307 35 26 chr9 14157299 14157413 -103705214 + MIR SINE MIR 10 124 -138 192 276 26 92 chr9 14157454 14157530 -103705097 - L2 LINE L2 0 3313 3243 248 217 43 29 chr9 14157564 14157633 -103704994 + MIR SINE MIR 192 261 -1 365 301 108 42 chr9 14159246 14159581 -103703046 - MLT1I LTR MaLR 0 409 53 1574 121 0 27 chr9 14159741 14159997 -103702630 - L1PA16 LINE L1 -1 6165 5917 1876 125 3 3 chr9 14159997 14160294 -103702333 + L1PA16 LINE L1 5611 5907 -259 949 176 58 0 chr9 14160354 14160542 -103702085 + MER20 DNA MER1_type 1 199 -20 243 205 0 64 chr9 14160618 14160696 -103701931 + L1ME2 LINE L1 4747 4819 -1327 367 317 21 14 chr9 14160727 14160869 -103701758 + L1ME2 LINE L1 4910 5052 -1094 3140 215 71 18 chr9 14161049 14161110 -103701517 + L1MC3 LINE L1 6797 6853 -932 207 0 0 0 chr9 14161110 14161133 -103701494 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3140 215 71 18 chr9 14161133 14162004 -103700623 + L1MC3 LINE L1 6853 7778 -7 262 270 14 7 chr9 14162027 14162175 -103700452 + L1M2 LINE L1 5297 5445 -846 999 106 0 0 chr9 14162223 14162355 -103700272 - AluYb8 SINE Alu -186 132 1 2071 137 0 7 chr9 14162446 14162752 -103699875 + AluJb SINE Alu 9 312 0 368 236 90 46 chr9 14162799 14162869 -103699758 + L1ME2 LINE L1 5601 5666 -498 1959 140 19 29 chr9 14162869 14163248 -103699379 + THE1C LTR MaLR 1 375 0 368 236 90 46 chr9 14163248 14163376 -103699251 + L1ME2 LINE L1 5666 5804 -360 224 139 69 28 chr9 14163396 14163468 -103699159 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 297 206 168 76 chr9 14163797 14163928 -103698699 + MER5A DNA MER1_type 47 189 0 190 196 22 22 chr9 14164207 14164253 -103698374 + L2 LINE L2 1190 1235 -2079 295 231 122 103 chr9 14164753 14165064 -103697563 + MLT1H LTR MaLR 230 546 -3 558 198 16 110 chr9 14166783 14166965 -103695662 + L1ME2 LINE L1 5965 6129 -35 669 304 99 21 chr9 14166973 14167256 -103695371 - L2 LINE L2 -470 2844 2540 207 0 0 0 chr9 14167266 14167289 -103695338 + (CTGTG)n Simple_repeat Simple_repeat 2 24 0 819 249 179 6 chr9 14167289 14167647 -103694980 + LTR16A LTR ERVL 26 445 -5 294 244 23 12 chr9 14167777 14167863 -103694764 + MIR SINE MIR 60 146 -62 201 39 0 0 chr9 14168156 14168182 -103694445 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 356 287 70 9 chr9 14168310 14168425 -103694202 + L2 LINE L2 2934 3055 -217 1205 251 51 11 chr9 14168894 14169382 -103693245 + MLT1H1 LTR MaLR 1 555 0 1985 130 39 41 chr9 14169571 14169933 -103692694 - THE1B LTR MaLR -3 361 1 1506 150 27 11 chr9 14169972 14170232 -103692395 + AluJo SINE Alu 49 312 0 615 157 157 0 chr9 14170271 14170379 -103692248 + FLAM_C SINE Alu 1 125 -18 184 212 82 129 chr9 14170734 14170771 -103691856 + MER5A DNA MER1_type 97 134 -55 2445 75 10 0 chr9 14170771 14171079 -103691548 - AluSp SINE Alu -1 312 2 184 212 82 129 chr9 14171079 14171126 -103691501 + MER5A DNA MER1_type 134 177 -12 2104 119 3 10 chr9 14171689 14171992 -103690635 + AluSx SINE Alu 1 301 -11 814 245 39 10 chr9 14174806 14175010 -103687617 - MIR SINE MIR 0 262 53 2272 117 0 13 chr9 14177446 14177762 -103684865 + AluSx SINE Alu 1 312 0 2010 133 11 0 chr9 14179406 14179691 -103682936 - AluSx SINE Alu -24 288 1 1034 292 31 58 chr9 14180070 14180705 -103681922 - L2 LINE L2 -5 3308 2694 881 233 193 7 chr9 14180788 14181093 -103681534 + LTR50 LTR ERVL 23 384 -411 553 205 176 5 chr9 14181121 14181331 -103681296 + LTR50 LTR ERVL 547 792 -3 1238 279 71 8 chr9 14181333 14181727 -103680900 - L2 LINE L2 -614 2700 2282 323 314 51 8 chr9 14181858 14181976 -103680651 + MIR SINE MIR 17 139 -123 467 270 72 7 chr9 14182075 14182227 -103680400 + MIR SINE MIR 84 245 -17 2416 115 13 13 chr9 14182477 14182852 -103679775 + THE1C LTR MaLR 1 375 0 339 285 190 22 chr9 14183117 14183296 -103679331 + MIR SINE MIR 3 211 -51 2046 124 0 0 chr9 14183381 14183655 -103678972 - AluSx SINE Alu -17 295 22 22 0 0 0 chr9 14184286 14184308 -103678319 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr9 14186093 14186132 -103676495 + (CA)n Simple_repeat Simple_repeat 2 40 0 459 0 0 0 chr9 14187598 14187649 -103674978 + (TA)n Simple_repeat Simple_repeat 1 51 0 309 354 41 7 chr9 14187721 14187903 -103674724 + MIR SINE MIR 5 192 -62 464 321 51 19 chr9 14188321 14188536 -103674091 - MIR SINE MIR -29 233 12 2189 100 3 3 chr9 14189139 14189438 -103673189 + AluSg SINE Alu 1 299 -11 391 269 85 90 chr9 14189827 14190440 -103672187 + L1ME4a LINE L1 5494 6103 -18 797 188 27 107 chr9 14191649 14191910 -103670717 - L1MC4 LINE L1 -1179 6863 6624 180 158 0 0 chr9 14191923 14191961 -103670666 + (TA)n Simple_repeat Simple_repeat 2 39 0 353 273 8 0 chr9 14192187 14192308 -103670319 - L1MC4 LINE L1 -1461 6581 6460 504 0 0 0 chr9 14192855 14192911 -103669716 + (TG)n Simple_repeat Simple_repeat 1 56 0 492 279 186 49 chr9 14193131 14193497 -103669130 + MLT1J2 LTR MaLR 31 446 -4 452 76 0 0 chr9 14193622 14193688 -103668939 - AluY SINE Alu -6 304 239 1449 80 0 0 chr9 14193688 14193864 -103668763 - AluY SINE Alu -135 176 1 201 286 82 61 chr9 14195419 14195517 -103667110 - L2 LINE L2 -5 3267 3168 357 323 92 15 chr9 14195569 14195699 -103666928 - MER91A DNA MER1_type -21 175 36 223 244 0 0 chr9 14196628 14196673 -103665954 + GA-rich Low_complexity Low_complexity 1 45 0 402 377 14 0 chr9 14196723 14196869 -103665758 + MIR3 SINE MIR 32 179 -29 212 172 0 31 chr9 14197521 14197585 -103665042 + GA-rich Low_complexity Low_complexity 3 64 0 5443 124 21 3 chr9 14198095 14199453 -103663174 - L1PA15 LINE L1 -3 6162 4765 2318 274 49 21 chr9 14199457 14200784 -103661843 - L1PA13 LINE L1 -4962 1825 1 600 272 97 9 chr9 14201314 14201531 -103661096 - MIR SINE MIR -6 256 21 515 268 56 62 chr9 14202985 14203325 -103659302 + L1MC4a LINE L1 5727 6064 -1744 22 35 0 0 chr9 14203494 14203523 -103659104 + AT_rich Low_complexity Low_complexity 1 29 0 243 246 0 0 chr9 14203551 14203608 -103659019 - L1 LINE L1 -1208 4938 4882 761 209 20 7 chr9 14203734 14203887 -103658740 - FRAM SINE Alu -11 155 1 354 318 43 51 chr9 14204022 14204203 -103658424 - L1 LINE L1 -1537 4609 4428 9604 80 18 4 chr9 14204203 14206317 -103656310 - L1PA7 LINE L1 -2 6152 4018 354 318 43 51 chr9 14206317 14206601 -103656026 - L1 LINE L1 -1718 4428 4132 252 0 0 0 chr9 14208087 14208115 -103654512 + (TG)n Simple_repeat Simple_repeat 2 29 0 208 250 0 0 chr9 14209458 14209514 -103653113 + A-rich Low_complexity Low_complexity 1 56 0 286 304 22 0 chr9 14209514 14209603 -103653024 + L3 LINE CR1 1392 1482 -95 420 254 177 8 chr9 14209603 14209733 -103652894 - MER5A DNA MER1_type 0 189 38 2191 120 13 0 chr9 14210770 14211078 -103651549 + AluSq SINE Alu 1 312 -1 568 274 84 31 chr9 14211655 14211881 -103650746 + MIR SINE MIR 15 252 -10 333 251 82 88 chr9 14211897 14212068 -103650559 + MIR SINE MIR 79 248 -14 21 0 0 0 chr9 14212082 14212103 -103650524 + AT_rich Low_complexity Low_complexity 1 21 0 207 391 68 24 chr9 14212739 14212946 -103649681 + L2 LINE L2 2679 2894 -420 258 264 91 0 chr9 14213031 14213152 -103649475 + L1MEd LINE L1 46 177 -5942 251 324 102 36 chr9 14213280 14213505 -103649122 + L1MEd LINE L1 307 546 -5573 281 217 79 122 chr9 14213839 14214208 -103648419 + L1MEd LINE L1 895 1247 -4872 335 319 77 64 chr9 14214260 14214495 -103648132 + L1MEc LINE L1 111 348 -6048 4114 143 58 23 chr9 14215232 14215976 -103646651 - LTR1 LTR ERV1 0 785 16 1269 286 135 29 chr9 14216206 14217203 -103645424 + L1MEc LINE L1 1265 2367 -4029 3316 225 44 22 chr9 14217282 14218410 -103644217 - L1ME1 LINE L1 0 6166 5018 395 278 181 29 chr9 14218628 14219170 -103643457 + L1P LINE L1 4027 4667 -1479 189 0 0 0 chr9 14222276 14222297 -103640330 + (T)n Simple_repeat Simple_repeat 1 21 0 2155 128 0 0 chr9 14222929 14223219 -103639408 - AluSx SINE Alu -22 290 1 550 184 53 9 chr9 14223939 14224053 -103638574 + MLT1A1 LTR MaLR 4 122 -243 313 242 247 42 chr9 14224538 14224728 -103637899 + MIR SINE MIR 28 256 -6 217 359 101 38 chr9 14225790 14225949 -103636678 - L3 LINE CR1 -3 1574 1406 200 233 0 0 chr9 14225987 14226030 -103636597 + (TA)n Simple_repeat Simple_repeat 1 43 0 581 324 70 9 chr9 14226074 14226287 -103636340 + MIR SINE MIR 37 262 0 453 216 10 49 chr9 14226334 14226436 -103636191 - Tigger7 DNA MER2_type 0 2491 2394 * 1294 167 108 4 chr9 14226435 14226675 -103635952 - Tigger7 DNA MER2_type -466 267 3 418 289 37 44 chr9 14226889 14227148 -103635479 - L1ME3A LINE L1 -225 5945 5691 256 330 33 0 chr9 14227171 14227262 -103635365 - L3 LINE CR1 -211 1366 1273 2215 186 22 5 chr9 14227532 14227945 -103634682 - MSTB LTR MaLR -6 420 1 28 61 0 0 chr9 14228099 14228148 -103634479 + AT_rich Low_complexity Low_complexity 1 49 0 849 187 187 0 chr9 14228588 14228786 -103633841 + MER46A DNA MER2_type 1 235 -1 226 330 23 29 chr9 14228830 14229003 -103633624 - L1MC/D LINE L1 -1954 5854 5683 311 261 87 26 chr9 14229003 14229118 -103633509 - L2 LINE L2 -10 3303 3182 21 0 0 0 chr9 14229530 14229551 -103633076 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr9 14229725 14229762 -103632865 + AT_rich Low_complexity Low_complexity 1 37 0 363 23 0 0 chr9 14229803 14229847 -103632780 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2505 77 3 0 chr9 14229893 14230205 -103632422 - AluSp SINE Alu 0 313 1 26 30 0 0 chr9 14230279 14230312 -103632315 + AT_rich Low_complexity Low_complexity 1 33 0 314 331 41 8 chr9 14230813 14230934 -103631693 + MIR SINE MIR 47 171 -91 716 252 26 17 chr9 14231259 14231489 -103631138 + L1ME3A LINE L1 5868 6099 -71 2293 76 3 0 chr9 14231587 14231875 -103630752 - AluY SINE Alu -22 289 1 252 244 16 41 chr9 14231918 14232041 -103630586 - L1ME4a LINE L1 -17 6104 5985 374 248 162 30 chr9 14232051 14232249 -103630378 - L1ME4a LINE L1 -195 5926 5703 183 42 0 0 chr9 14234782 14234806 -103627821 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1667 116 66 76 chr9 14235502 14235805 -103626822 - AluSx SINE Alu -12 300 1 1988 143 7 7 chr9 14236109 14236417 -103626210 + AluJb SINE Alu 1 308 -4 331 238 0 76 chr9 14236793 14236898 -103625729 + MIR SINE MIR 97 193 -69 6602 152 15 20 chr9 14237463 14237810 -103624817 - L1PB1 LINE L1 -1 6150 5802 222 37 0 0 chr9 14237810 14237837 -103624790 + (TG)n Simple_repeat Simple_repeat 2 28 0 6602 152 15 20 chr9 14237837 14239676 -103622951 - L1PB1 LINE L1 -349 5802 3977 236 374 12 0 chr9 14240155 14240238 -103622389 - L2 LINE L2 -3 3310 3227 212 158 0 0 chr9 14241353 14241391 -103621236 + CT-rich Low_complexity Low_complexity 1 38 0 369 131 0 0 chr9 14241408 14241469 -103621158 + (CA)n Simple_repeat Simple_repeat 2 62 0 324 0 0 0 chr9 14241922 14241958 -103620669 + (CA)n Simple_repeat Simple_repeat 2 37 0 270 272 39 39 chr9 14242085 14242229 -103620398 + MER5B DNA MER1_type 29 182 -7 180 163 0 0 chr9 14242254 14242297 -103620330 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 278 371 41 6 chr9 14243352 14243517 -103619110 - MIR3 SINE MIR -13 195 22 2160 122 0 6 chr9 14243835 14244147 -103618480 + AluSx SINE Alu 1 310 -2 1672 163 14 14 chr9 14244416 14244711 -103617916 + AluSx SINE Alu 3 297 -15 850 267 114 45 chr9 14245580 14245984 -103616643 + MER115 DNA AcHobo 262 693 0 226 308 15 0 chr9 14247142 14247207 -103615420 + MIR SINE MIR 74 139 -123 407 93 47 23 chr9 14248381 14248467 -103614160 - L1MA9 LINE L1 0 6312 6225 3652 142 81 9 chr9 14248485 14249155 -103613472 - L1MA9 LINE L1 -149 6163 5446 1788 45 18 18 chr9 14249169 14249391 -103613236 - AluY SINE Alu -13 298 77 1019 193 57 5 chr9 14250659 14250871 -103611756 + MER58A DNA MER1_type 2 224 0 239 304 29 0 chr9 14252067 14252136 -103610491 + CT-rich Low_complexity Low_complexity 5 75 0 240 86 0 0 chr9 14252460 14252495 -103610132 + (TCC)n Simple_repeat Simple_repeat 1 35 0 264 282 28 0 chr9 14252661 14252732 -103609895 + (TATG)n Simple_repeat Simple_repeat 2 74 0 195 283 0 0 chr9 14254699 14254745 -103607882 - L2 LINE L2 -26 3287 3242 785 218 39 6 chr9 14254780 14254959 -103607668 - MIR SINE MIR 0 262 78 480 313 124 41 chr9 14255577 14256143 -103606484 - L2 LINE L2 -580 2734 2122 1065 186 38 0 chr9 14257224 14257434 -103605193 + MER20 DNA MER1_type 2 219 0 1713 156 27 16 chr9 14257864 14258204 -103604423 + THE1C LTR MaLR 1 399 -29 802 124 0 0 chr9 14258238 14258359 -103604268 - L1PB1 LINE L1 -1 6150 6030 231 108 27 0 chr9 14258367 14258404 -103604223 + THE1C LTR MaLR 391 428 0 1924 164 3 0 chr9 14258850 14259148 -103603479 + AluJb SINE Alu 1 299 -13 680 132 23 8 chr9 14259232 14259361 -103603266 + L1MA9 LINE L1 6175 6305 -7 275 236 83 90 chr9 14259591 14259735 -103602892 + L2 LINE L2 3166 3308 -5 429 296 25 0 chr9 14259882 14260044 -103602583 - L1ME1 LINE L1 -5 6161 5996 213 403 0 0 chr9 14260395 14260472 -103602155 + L2 LINE L2 3231 3307 -6 1990 137 0 3 chr9 14260556 14260855 -103601772 - AluSx SINE Alu -14 298 1 763 139 0 0 chr9 14260868 14260983 -103601644 - AluSp/q SINE Alu -14 299 185 2143 100 13 13 chr9 14262372 14262682 -103599945 + AluSx SINE Alu 1 310 -2 34 24 0 0 chr9 14262735 14262776 -103599851 + AT_rich Low_complexity Low_complexity 1 41 0 272 320 39 13 chr9 14263046 14263199 -103599428 - L1MDa LINE L1 -3572 3276 3120 612 306 91 8 chr9 14263200 14263442 -103599185 - MIR SINE MIR 0 262 1 912 173 70 9 chr9 14263735 14263949 -103598678 + MER33 DNA MER1_type 5 231 -93 938 171 0 24 chr9 14263952 14264116 -103598511 + FRAM SINE Alu 2 161 -15 352 137 10 128 chr9 14264116 14264218 -103598409 + MER33 DNA MER1_type 271 360 -3 334 199 166 40 chr9 14264761 14264912 -103597715 - L1MDa LINE L1 -4518 2330 2161 2994 196 77 13 chr9 14265130 14266201 -103596426 - L1ME1 LINE L1 -63 6103 4959 11869 200 88 5 chr9 14266322 14268966 -103593661 - L1M4 LINE L1 -3984 2865 2 21 0 0 0 chr9 14268968 14268989 -103593638 + AT_rich Low_complexity Low_complexity 1 21 0 1729 119 31 97 chr9 14269366 14269685 -103592942 - AluSx SINE Alu -14 298 1 215 345 34 61 chr9 14270360 14270508 -103592119 - L2 LINE L2 -609 2705 2562 22 0 0 0 chr9 14270657 14270679 -103591948 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr9 14271604 14271632 -103590995 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 14271790 14271815 -103590812 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 14273963 14273987 -103588640 + AT_rich Low_complexity Low_complexity 1 24 0 325 254 117 73 chr9 14274879 14275084 -103587543 + MIR SINE MIR 49 262 0 275 188 145 0 chr9 14275743 14275812 -103586815 + MIR SINE MIR 78 156 -106 1001 217 55 0 chr9 14276436 14276653 -103585974 - MLT1A1 LTR MaLR 0 365 137 324 258 45 8 chr9 14276698 14276830 -103585797 + MER103 DNA DNA 28 164 -2 21 0 0 0 chr9 14277307 14277328 -103585299 + AT_rich Low_complexity Low_complexity 1 21 0 892 259 110 5 chr9 14277419 14277828 -103584799 - L1ME4a LINE L1 -128 5993 5542 683 284 155 36 chr9 14278233 14278620 -103584007 + L2 LINE L2 2881 3313 0 285 29 0 0 chr9 14279094 14279128 -103583499 + (TC)n Simple_repeat Simple_repeat 1 34 0 233 287 226 11 chr9 14279871 14280052 -103582575 - L3 LINE CR1 -169 1408 1189 520 304 32 57 chr9 14280055 14280338 -103582289 + Charlie8 DNA MER1_type 1 276 -2141 253 353 67 20 chr9 14280506 14280656 -103581971 - L3 LINE CR1 -384 1193 1037 1190 207 102 23 chr9 14280660 14281003 -103581624 + MLT1A2 LTR MaLR 1 370 -4 189 364 20 10 chr9 14281082 14281181 -103581446 - L3 LINE CR1 -665 912 813 302 279 61 41 chr9 14281207 14281354 -103581273 + MIR3 SINE MIR 8 157 -51 832 156 0 0 chr9 14281738 14281860 -103580767 - FLAM_C SINE Alu -18 125 4 22 0 0 0 chr9 14284586 14284608 -103578019 + AT_rich Low_complexity Low_complexity 1 22 0 1766 174 11 27 chr9 14284923 14285297 -103577330 - MER73 LTR ERVL 0 644 277 213 204 0 41 chr9 14285305 14285354 -103577273 + CT-rich Low_complexity Low_complexity 3 49 0 1648 206 33 26 chr9 14285360 14285853 -103576774 - MER54A LTR ERVL -345 398 1 398 287 150 18 chr9 14286998 14287165 -103575462 + MIR SINE MIR 2 190 -72 418 330 74 37 chr9 14287463 14287896 -103574731 - LTR33 LTR ERVL 0 521 73 2354 114 0 6 chr9 14287917 14288232 -103574395 + AluSq SINE Alu 1 313 0 823 151 25 0 chr9 14288278 14288437 -103574190 + LTR24C LTR ERV1 473 635 0 295 167 20 98 chr9 14288437 14288539 -103574088 + L1MA9 LINE L1 5714 5790 -378 2011 179 43 14 chr9 14288581 14288937 -103573690 + L1MA9 LINE L1 5802 6175 -137 336 48 0 0 chr9 14288937 14288979 -103573648 + (CA)n Simple_repeat Simple_repeat 1 42 0 2011 179 43 14 chr9 14288979 14289068 -103573559 + L1MA9 LINE L1 6175 6260 -52 1558 184 89 77 chr9 14289075 14289504 -103573123 + MER21B LTR ERV1 1 434 -429 1657 179 0 0 chr9 14289612 14289874 -103572753 - AluJb SINE Alu -50 262 1 1338 57 0 0 chr9 14290058 14290247 -103572380 + AluY SINE Alu 124 312 0 4937 166 16 4 chr9 14290282 14291284 -103571343 - L1MA4 LINE L1 -817 5329 4316 782 178 19 0 chr9 14291285 14291442 -103571185 + L1MA4 LINE L1 5331 5490 -815 5349 184 30 17 chr9 14291444 14297024 -103565603 + L1PA13 LINE L1 217 5996 -818 2228 108 3 0 chr9 14297024 14297319 -103565308 + AluSc SINE Alu 1 296 -13 5349 184 30 17 chr9 14297319 14298149 -103564478 + L1PA13 LINE L1 5996 6814 0 4101 144 50 30 chr9 14298149 14298945 -103563682 + L1MA4 LINE L1 5477 6298 -2 225 228 18 123 chr9 14299111 14299225 -103563402 + L1MA9 LINE L1 2659 2760 -3386 4171 258 68 49 chr9 14299239 14301552 -103561075 + L1ME3 LINE L1 2919 5303 -843 1374 231 57 33 chr9 14301553 14301921 -103560706 + MLT1D LTR MaLR 123 499 -6 250 221 126 0 chr9 14301969 14302064 -103560563 + L1ME3 LINE L1 5680 5786 -376 2305 106 0 19 chr9 14302136 14302448 -103560179 - AluSq SINE Alu -7 306 1 1604 200 90 65 chr9 14302501 14302992 -103559635 - MLT1D LTR MaLR -2 503 1 617 329 148 34 chr9 14303360 14304014 -103558613 - L2 LINE L2 -1966 1348 620 267 330 94 52 chr9 14304045 14304312 -103558315 - L2 LINE L2 -874 2440 2163 2190 67 11 0 chr9 14304425 14304694 -103557933 - AluY SINE Alu -10 301 30 234 0 0 0 chr9 14304714 14304740 -103557887 + (CA)n Simple_repeat Simple_repeat 1 26 0 3196 197 57 40 chr9 14305083 14305566 -103557061 + L1MA9 LINE L1 3329 3833 -2313 1251 181 165 0 chr9 14305566 14305814 -103556813 + AluJb SINE Alu 1 289 -13 3196 197 57 40 chr9 14305814 14306154 -103556473 + L1MA9 LINE L1 3833 4166 -1980 2457 130 21 108 chr9 14306153 14306720 -103555907 + L1MA9 LINE L1 5410 5928 -384 * 187 127 79 0 chr9 14306725 14306788 -103555839 + (TA)n Simple_repeat Simple_repeat 1 68 0 1724 163 66 11 chr9 14306804 14307166 -103555461 + L1MA9 LINE L1 5931 6312 0 275 333 23 0 chr9 14307414 14307501 -103555126 + MIR SINE MIR 64 152 -110 182 388 24 24 chr9 14309111 14309196 -103553431 + MIR3 SINE MIR 5 89 -119 334 285 120 19 chr9 14309261 14309419 -103553208 + MIR SINE MIR 62 235 -27 498 202 22 0 chr9 14312052 14312141 -103550486 + MER58C DNA MER1_type 125 215 0 1010 233 20 8 chr9 14312286 14312531 -103550096 + L1ME3 LINE L1 5901 6148 -14 441 291 40 38 chr9 14312608 14312966 -103549661 + L1MEc LINE L1 1440 1858 -718 256 246 0 0 chr9 14313065 14313122 -103549505 + L1ME3 LINE L1 6092 6148 -14 2411 190 38 14 chr9 14313199 14313700 -103548927 - LTR53 LTR ERVL -2 517 5 319 177 16 48 chr9 14315175 14315237 -103547390 + MER20 DNA MER1_type 1 60 -159 5247 70 4 3 chr9 14315244 14315935 -103546692 - L1PA7 LINE L1 0 6154 5463 1868 98 0 0 chr9 14315935 14316199 -103546428 - L1P3 LINE L1 -6173 288 25 599 247 0 77 chr9 14316199 14316393 -103546234 + MER20 DNA MER1_type 41 219 0 279 0 0 0 chr9 14316926 14316957 -103545670 + (A)n Simple_repeat Simple_repeat 1 31 0 782 308 82 30 chr9 14318181 14318509 -103544118 - MLT1I LTR MaLR -13 396 52 2031 133 7 3 chr9 14318935 14319237 -103543390 - AluSc SINE Alu -6 303 1 238 313 157 15 chr9 14319624 14319892 -103542735 + L1MC/D LINE L1 5324 5629 -2179 2725 26 3 0 chr9 14320067 14320377 -103542250 + AluY SINE Alu 1 311 0 3177 257 34 12 chr9 14320706 14321650 -103540977 + L1MEc LINE L1 35 999 -5397 2065 123 7 0 chr9 14321681 14321974 -103540653 + AluSx SINE Alu 1 295 -17 2429 237 31 45 chr9 14322152 14322358 -103540269 + L1MB1 LINE L1 3459 3666 -3899 1715 164 13 13 chr9 14322358 14322663 -103539964 + AluJb SINE Alu 1 305 -7 2429 237 31 45 chr9 14322663 14323284 -103539343 + L1MB1 LINE L1 3666 4288 -3277 21 0 0 0 chr9 14323543 14323564 -103539063 + AT_rich Low_complexity Low_complexity 1 21 0 861 246 43 5 chr9 14324123 14324334 -103538293 + MER20 DNA MER1_type 1 219 0 28 0 0 0 chr9 14324956 14324984 -103537643 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr9 14326621 14326651 -103535976 + (TTA)n Simple_repeat Simple_repeat 1 30 0 6916 58 18 0 chr9 14326652 14327828 -103534799 - L1PA7 LINE L1 -18 6136 4953 13208 89 11 9 chr9 14327830 14329730 -103532897 + L1PA7 LINE L1 3053 4954 -1192 1332 285 86 22 chr9 14330096 14330552 -103532075 - MLT1H LTR MaLR 0 549 65 1111 138 0 0 chr9 14330568 14330720 -103531907 - AluSg/x SINE Alu -26 286 135 241 306 28 0 chr9 14330720 14330792 -103531835 - MLT1H LTR MaLR -472 77 4 184 280 0 20 chr9 14330844 14330894 -103531733 - L2 LINE L2 -15 3298 3250 1891 109 0 0 chr9 14330924 14331172 -103531455 + AluSg SINE Alu 40 287 -23 3567 196 32 2 chr9 14331195 14332355 -103530272 - L1MA8 LINE L1 -291 6000 4805 740 261 34 25 chr9 14332525 14332763 -103529864 + MIR SINE MIR 12 251 -11 6146 205 77 7 chr9 14332924 14334419 -103528208 + L1MB1 LINE L1 5047 6646 -919 2173 147 61 7 chr9 14334425 14334833 -103527794 + L1MB1 LINE L1 7158 7587 0 323 271 146 21 chr9 14335019 14335163 -103527464 + MIR SINE MIR 97 258 -4 321 248 71 26 chr9 14335404 14335517 -103527110 - MLT1L LTR MaLR -71 544 427 2064 142 0 0 chr9 14335533 14335829 -103526798 - AluSx SINE Alu -16 296 1 1562 221 82 16 chr9 14337294 14337732 -103524895 - MLT1C LTR MaLR 0 467 1 530 306 15 20 chr9 14338024 14338220 -103524407 - L2 LINE L2 -189 3083 2889 264 316 106 80 chr9 14338821 14339058 -103523569 + L2 LINE L2 3030 3272 0 226 260 13 13 chr9 14341343 14341420 -103521207 - L1MC4 LINE L1 -40 8002 7926 227 91 0 45 chr9 14341432 14341476 -103521151 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 2298 243 124 75 chr9 14341476 14342859 -103519768 - L1MC4 LINE L1 -133 7909 6460 609 165 39 0 chr9 14343711 14343814 -103518813 - Tigger1 DNA MER2_type 0 2418 2312 12533 137 23 19 chr9 14343815 14343923 -103518704 - Tigger1 DNA MER2_type -348 2070 1964 1875 119 0 11 chr9 14343923 14344200 -103518427 - AluSx SINE Alu 0 312 39 12533 137 23 19 chr9 14344200 14346152 -103516475 - Tigger1 DNA MER2_type -454 1964 2 615 305 114 39 chr9 14347761 14348169 -103514458 + L2 LINE L2 2812 3261 -52 2098 142 5 45 chr9 14348169 14348549 -103514078 - MLT1A1 LTR MaLR 0 365 1 615 305 114 39 chr9 14348549 14348605 -103514022 + L2 LINE L2 3261 3311 -2 1393 197 42 39 chr9 14349450 14349789 -103512838 + Tigger7 DNA MER2_type 1 2491 0 245 308 34 60 chr9 14349796 14349913 -103512714 - MIR3 SINE MIR -4 204 91 198 0 0 0 chr9 14350173 14350195 -103512432 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2069 129 60 20 chr9 14350863 14351212 -103511415 - THE1B LTR MaLR 0 364 2 197 305 95 0 chr9 14351234 14351329 -103511298 - L2 LINE L2 -1 3271 3168 504 189 36 18 chr9 14351405 14351516 -103511111 + L1ME3 LINE L1 6020 6132 -30 2472 54 0 10 chr9 14351815 14352110 -103510517 + AluY SINE Alu 2 293 -18 237 251 70 87 chr9 14354024 14354193 -103508434 + MIR SINE MIR 21 192 -63 252 281 86 55 chr9 14354740 14354868 -103507759 + MIR SINE MIR 40 171 -91 308 179 80 19 chr9 14355011 14355173 -103507454 + (TA)n Simple_repeat Simple_repeat 1 172 0 5949 172 18 4 chr9 14355267 14356460 -103506167 - L1MC1 LINE L1 -6 6396 5187 * 19822 192 31 14 chr9 14356449 14359362 -103503265 - L1PA13 LINE L1 0 6814 3952 450 0 0 0 chr9 14359362 14359412 -103503215 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 19822 192 31 14 chr9 14359412 14363174 -103499453 - L1PA13 LINE L1 -2862 3952 2 2766 260 41 3 chr9 14363190 14364064 -103498563 - L1MC1 LINE L1 -1010 5205 4295 4288 40 4 0 chr9 14364064 14364586 -103498041 - L1PA4 LINE L1 -1 6154 5631 9006 27 7 0 chr9 14364586 14365891 -103496736 + L1PA4 LINE L1 4298 5607 -548 7438 241 33 15 chr9 14365892 14368301 -103494326 - L1MC1 LINE L1 -1898 4317 1914 292 318 40 0 chr9 14368980 14369106 -103493521 + MIR SINE MIR 88 218 -44 309 330 11 0 chr9 14369625 14369719 -103492908 + L2 LINE L2 3217 3311 -2 300 345 40 7 chr9 14369760 14369908 -103492719 - MIR SINE MIR -73 189 37 447 207 198 0 chr9 14369908 14370019 -103492608 + MER63 DNA MER1_type 1 759 -77 223 377 85 0 chr9 14371173 14371303 -103491324 + MIR3 SINE MIR 39 179 -29 594 254 169 0 chr9 14371706 14371883 -103490744 - MIR SINE MIR -6 256 50 431 319 108 11 chr9 14373424 14373573 -103489054 - MIR SINE MIR 0 262 90 7610 22 0 0 chr9 14373573 14374646 -103487981 - L1PA3 LINE L1 -1 6154 5093 431 319 108 11 chr9 14374646 14374681 -103487946 - MIR SINE MIR -172 90 60 435 198 0 41 chr9 14375578 14375750 -103486877 + (TA)n Simple_repeat Simple_repeat 2 166 0 415 236 12 6 chr9 14375781 14376105 -103486522 + (TA)n Simple_repeat Simple_repeat 1 326 0 917 221 47 50 chr9 14376120 14376379 -103486248 - L1ME3A LINE L1 -10 6160 5901 1448 151 62 127 chr9 14376379 14376750 -103485877 + MER7A DNA MER2_type 1 345 -1 917 221 47 50 chr9 14376750 14376789 -103485838 - L1ME3A LINE L1 -269 5901 5863 336 97 0 0 chr9 14377095 14377144 -103485483 + Alu SINE Alu 1 44 -256 1468 113 0 14 chr9 14377144 14377356 -103485271 + AluSg/x SINE Alu 92 300 -12 26 30 0 0 chr9 14377615 14377648 -103484979 + AT_rich Low_complexity Low_complexity 1 33 0 2098 125 46 25 chr9 14377710 14378077 -103484550 + THE1C LTR MaLR 1 375 0 226 322 101 20 chr9 14378769 14378918 -103483709 - MER117 DNA MER1_type -35 162 2 2620 178 36 27 chr9 14379415 14379998 -103482629 + L1MC3 LINE L1 7080 7667 -118 200 309 55 55 chr9 14380210 14380320 -103482307 + MIR3 SINE MIR 98 207 -1 369 62 0 0 chr9 14380903 14380951 -103481676 + (TTTTG)n Simple_repeat Simple_repeat 3 50 0 213 121 0 0 chr9 14381032 14381065 -103481562 + (TA)n Simple_repeat Simple_repeat 2 34 0 215 225 0 67 chr9 14381617 14381706 -103480921 + GA-rich Low_complexity Low_complexity 1 83 0 210 385 67 0 chr9 14382408 14382512 -103480115 + L2 LINE L2 3152 3262 -10 293 307 57 0 chr9 14383294 14383382 -103479245 - L2 LINE L2 0 3313 3221 759 296 120 29 chr9 14384000 14384351 -103478276 - MLT1I LTR MaLR -11 398 16 184 282 0 0 chr9 14386379 14386418 -103476209 - L2 LINE L2 -12 3301 3263 * 226 268 98 102 chr9 14386386 14386632 -103475995 - MIR SINE MIR -13 249 5 702 294 24 37 chr9 14386671 14387048 -103475579 + L1M4 LINE L1 3521 3892 -2254 2519 149 38 5 chr9 14387184 14387665 -103474962 + L1MA6 LINE L1 5219 5716 -584 631 191 0 8 chr9 14387665 14387794 -103474833 + L1MA6 LINE L1 6170 6299 -1 2519 149 38 5 chr9 14387794 14387808 -103474819 + L1MA6 LINE L1 5716 5728 -572 300 306 103 41 chr9 14387849 14388091 -103474536 + L1M4 LINE L1 4113 4369 -1777 267 222 156 11 chr9 14388269 14388359 -103474268 + L2 LINE L2 3195 3297 -16 339 306 66 73 chr9 14388380 14388560 -103474067 + L1M4 LINE L1 4748 4927 -1219 2366 77 0 17 chr9 14388560 14388860 -103473767 + AluY SINE Alu 1 295 -16 339 306 66 73 chr9 14388860 14388967 -103473660 + L1M4 LINE L1 4927 5033 -1113 293 274 122 43 chr9 14389871 14390035 -103472592 + MIR SINE MIR 7 183 -79 234 281 135 0 chr9 14390991 14391087 -103471540 - L2 LINE L2 0 3313 3205 407 303 61 40 chr9 14391388 14391586 -103471041 - MIR SINE MIR -18 244 43 462 360 32 28 chr9 14392228 14392481 -103470146 + MIR SINE MIR 8 261 -1 436 223 39 10 chr9 14394711 14394814 -103467813 - MER58 DNA MER1_type -57 284 179 840 267 63 10 chr9 14394864 14395167 -103467460 - L1ME LINE L1 -297 5824 5506 218 280 70 108 chr9 14396356 14396542 -103466085 + L2 LINE L2 2699 2877 -437 437 128 0 51 chr9 14396644 14396722 -103465905 + L1MC2 LINE L1 6247 6320 -24 263 254 17 0 chr9 14397144 14397203 -103465424 - MIR SINE MIR -2 260 201 685 223 137 25 chr9 14397524 14397721 -103464906 + MIR SINE MIR 23 241 -21 1982 134 10 22 chr9 14398180 14398493 -103464134 - AluSc SINE Alu 0 309 1 693 219 152 19 chr9 14398844 14399100 -103463527 + MER102a DNA MER1_type 40 329 -1 241 299 39 0 chr9 14399426 14399503 -103463124 + MIR SINE MIR 109 188 -74 301 317 89 0 chr9 14400233 14400334 -103462293 + L2 LINE L2 3199 3308 -5 995 171 0 43 chr9 14400421 14400597 -103462030 - AluJo SINE Alu -8 304 135 1517 181 0 55 chr9 14400597 14400759 -103461868 - AluJo SINE Alu -20 292 153 1874 140 42 3 chr9 14400759 14401044 -103461583 - AluSx SINE Alu -16 296 1 1517 181 0 55 chr9 14401044 14401190 -103461437 - AluJo SINE Alu -159 153 1 21 0 0 0 chr9 14401635 14401656 -103460971 + AT_rich Low_complexity Low_complexity 1 21 0 2011 125 29 0 chr9 14402166 14402446 -103460181 - AluSx SINE Alu -24 288 1 1253 260 108 39 chr9 14402895 14403106 -103459521 - MLT1G LTR MaLR -18 572 377 8588 104 16 41 chr9 14403106 14404426 -103458201 - HSMAR1 DNA Mariner 0 1287 1 1253 260 108 39 chr9 14404426 14404749 -103457878 - MLT1G LTR MaLR -213 377 1 396 306 73 8 chr9 14405063 14405311 -103457316 + L1ME4a LINE L1 5604 5867 -254 31 26 0 0 chr9 14405517 14405555 -103457072 + AT_rich Low_complexity Low_complexity 1 38 0 218 160 0 40 chr9 14405631 14405681 -103456946 + A-rich Low_complexity Low_complexity 3 50 0 1340 236 48 37 chr9 14405851 14406313 -103456314 + MLT1C LTR MaLR 1 467 0 44 0 0 0 chr9 14406892 14406936 -103455691 + AT_rich Low_complexity Low_complexity 1 44 0 2007 144 3 0 chr9 14407035 14407326 -103455301 - AluSx SINE Alu -13 299 8 319 247 20 25 chr9 14407386 14407576 -103455051 - L1ME LINE L1 -303 5818 5562 1245 212 89 9 chr9 14407666 14407982 -103454645 - MER58B DNA MER1_type 0 341 1 21 0 0 0 chr9 14409765 14409786 -103452841 + AT_rich Low_complexity Low_complexity 1 21 0 1623 170 71 14 chr9 14412086 14412368 -103450259 - AluJb SINE Alu -14 298 1 442 258 25 42 chr9 14412375 14412495 -103450132 - MER5A DNA MER1_type -11 178 61 7275 67 9 1 chr9 14412504 14414238 -103448389 - L1PA6 LINE L1 0 6154 4395 1053 155 0 6 chr9 14417983 14418144 -103444483 - AluSq SINE Alu -153 160 1 240 278 0 0 chr9 14418683 14418737 -103443890 + GA-rich Low_complexity Low_complexity 4 57 0 242 324 0 14 chr9 14418993 14419067 -103443560 - MER5B DNA MER1_type -80 98 26 325 296 111 25 chr9 14421258 14421437 -103441190 + MIR SINE MIR 41 234 -28 326 258 151 63 chr9 14422810 14422969 -103439658 + L2 LINE L2 3137 3309 -4 265 283 131 21 chr9 14423057 14423202 -103439425 - MIR SINE MIR -53 209 49 2499 161 11 36 chr9 14424994 14425466 -103437161 + MLT1C LTR MaLR 5 464 -3 295 267 59 59 chr9 14426035 14426222 -103436405 + LTR16A LTR ERVL 1 183 -267 1091 374 50 4 chr9 14426222 14427049 -103435578 - HERV16 LTR ERVL -776 4988 4124 318 296 70 0 chr9 14427074 14427189 -103435438 - HERV16 LTR ERVL -2020 3465 3343 395 282 34 0 chr9 14427374 14427491 -103435136 - HERV16 LTR ERVL -2496 3158 3038 1573 328 52 20 chr9 14427828 14429077 -103433550 - HERV16 LTR ERVL -2649 3005 1709 264 215 215 0 chr9 14429587 14429666 -103432961 - HERV16 LTR ERVL -3967 1029 934 1086 324 45 22 chr9 14429890 14430445 -103432182 - HERV16 LTR ERVL -4316 680 110 986 244 136 12 chr9 14430445 14430777 -103431850 - MLT1A2 LTR MaLR -1 373 1 1086 324 45 22 chr9 14430777 14430798 -103431829 - HERV16 LTR ERVL -4886 110 91 882 283 75 44 chr9 14430856 14431269 -103431358 - LTR16A LTR ERVL -8 442 17 240 273 0 30 chr9 14432752 14432818 -103429809 + L2 LINE L2 2230 2293 -1021 206 400 57 0 chr9 14432891 14432996 -103429631 + L2 LINE L2 2564 2674 -640 1468 107 0 0 chr9 14433080 14433267 -103429360 + AluY SINE Alu 1 187 -124 324 67 0 33 chr9 14433271 14433331 -103429296 + AluSp/q SINE Alu 246 303 0 1342 177 61 49 chr9 14433655 14434109 -103428518 + MLT2B3 LTR ERVL 1 554 0 306 0 0 0 chr9 14434124 14434158 -103428469 + (T)n Simple_repeat Simple_repeat 1 34 0 344 188 9 27 chr9 14436799 14436911 -103425716 + (TA)n Simple_repeat Simple_repeat 2 111 0 616 348 45 44 chr9 14437108 14437663 -103424964 + L2 LINE L2 2720 3276 -37 1946 142 0 3 chr9 14438112 14438400 -103424227 - AluSx SINE Alu -25 287 1 182 194 0 0 chr9 14438698 14438729 -103423898 + L2 LINE L2 3240 3270 -2 182 234 0 109 chr9 14438879 14438943 -103423684 - L3 LINE CR1 -124 1453 1397 323 301 83 19 chr9 14439511 14439667 -103422960 - MIR SINE MIR -6 256 91 198 0 0 0 chr9 14440402 14440424 -103422203 + (CA)n Simple_repeat Simple_repeat 1 22 0 289 261 9 18 chr9 14441547 14441658 -103420969 - L1ME2 LINE L1 -216 5948 5839 199 273 0 61 chr9 14442853 14442919 -103419708 - L2 LINE L2 -1 3271 3210 393 276 147 6 chr9 14444273 14444443 -103418184 - MIR SINE MIR -3 259 66 12528 136 40 40 chr9 14444746 14445270 -103417357 + Tigger1 DNA MER2_type 52 575 -1843 4804 109 18 20 chr9 14445270 14445597 -103417030 - L1MA2 LINE L1 -1 6303 5977 1315 120 65 5 chr9 14445597 14445814 -103416813 - MER30 DNA MER1_type 0 230 1 4804 109 18 20 chr9 14445814 14446272 -103416355 - L1MA2 LINE L1 -327 5977 5520 12528 136 40 40 chr9 14446272 14447906 -103414721 + Tigger1 DNA MER2_type 575 2211 -207 1532 146 0 0 chr9 14447906 14448119 -103414508 + AluSx SINE Alu 24 236 -76 12528 136 40 40 chr9 14448119 14448327 -103414300 + Tigger1 DNA MER2_type 2211 2418 0 391 300 31 86 chr9 14449312 14449602 -103413025 - L1ME4a LINE L1 -214 5907 5634 1878 152 44 0 chr9 14449676 14449972 -103412655 - AluSx SINE Alu -3 309 1 230 316 0 21 chr9 14452927 14453022 -103409605 + GA-rich Low_complexity Low_complexity 6 98 0 378 0 0 0 chr9 14453193 14453235 -103409392 + (CA)n Simple_repeat Simple_repeat 1 42 0 910 179 112 45 chr9 14453600 14453823 -103408804 - MER8 DNA MER2_type 0 239 2 212 364 0 0 chr9 14454292 14454358 -103408269 - MIR SINE MIR -67 141 76 565 200 7 22 chr9 14454466 14454601 -103408026 + L1MB5 LINE L1 6041 6173 -1 198 294 0 0 chr9 14454958 14455009 -103407618 + L2 LINE L2 3250 3300 -13 877 182 21 74 chr9 14455390 14455513 -103407114 - L1MB1 LINE L1 -242 5926 5821 1771 167 3 33 chr9 14455513 14455819 -103406808 + AluSx SINE Alu 1 297 -15 877 182 21 74 chr9 14455819 14455937 -103406690 - L1MB1 LINE L1 -347 5821 5698 1324 139 0 18 chr9 14455951 14456174 -103406453 + THE1B LTR MaLR 1 219 -145 15409 133 20 57 chr9 14456193 14459234 -103403393 + L1PA7 LINE L1 12 2939 -3207 7040 39 15 1 chr9 14459234 14460095 -103402532 + L1PA4 LINE L1 5274 6155 0 * 18030 71 11 7 chr9 14460088 14463320 -103399307 + L1PA7 LINE L1 2913 6153 -1 777 114 18 1 chr9 14463428 14463563 -103399064 + THE1A LTR MaLR 220 355 0 1468 217 50 29 chr9 14463931 14464374 -103398253 + MER63C DNA MER1_type 1 452 -478 548 173 62 6 chr9 14464392 14464554 -103398073 + MER63C DNA MER1_type 675 845 -85 475 326 88 19 chr9 14465038 14465357 -103397270 + L1M4 LINE L1 3604 3944 -2202 785 130 12 80 chr9 14465487 14465649 -103396978 + MER5A DNA MER1_type 3 153 -36 1642 213 27 12 chr9 14465650 14466058 -103396569 - MER63C DNA MER1_type 0 931 518 794 274 42 9 chr9 14466058 14466273 -103396354 - MER58A DNA MER1_type -2 222 1 * 1081 234 54 24 chr9 14466273 14466630 -103395997 - MER63C DNA MER1_type -409 521 154 455 311 73 43 chr9 14466659 14467054 -103395573 + L1M4 LINE L1 4142 4548 -1598 505 301 96 50 chr9 14467490 14468108 -103394519 - L1MC4a LINE L1 -1833 5975 5330 413 339 94 29 chr9 14468613 14468996 -103393631 - L2 LINE L2 -259 3054 2653 417 294 54 20 chr9 14469331 14469562 -103393065 - MLT1J1 LTR MaLR -228 283 4 414 273 41 16 chr9 14469587 14469708 -103392919 - MIR SINE MIR -130 132 9 851 240 62 0 chr9 14469828 14470036 -103392591 + MER58A DNA MER1_type 4 224 0 1206 236 62 23 chr9 14472419 14472808 -103389819 - MER74B LTR ERVL -77 545 142 364 363 44 0 chr9 14473195 14473355 -103389272 + MIR SINE MIR 29 195 -67 180 263 165 23 chr9 14474471 14474604 -103388023 + L3 LINE CR1 1105 1256 -321 644 327 125 38 chr9 14478723 14479655 -103382972 + L2 LINE L2 2233 3272 0 1059 264 132 2 chr9 14480415 14480809 -103381818 - LTR16A1 LTR ERVL -12 445 1 2071 110 24 81 chr9 14483144 14483304 -103379323 + THE1B LTR MaLR 4 172 -192 2205 126 0 0 chr9 14483304 14483598 -103379029 - AluSp SINE Alu -14 299 6 2071 110 24 81 chr9 14483598 14483820 -103378807 + THE1B LTR MaLR 172 364 0 456 279 207 8 chr9 14483921 14484172 -103378455 - L1MC/D LINE L1 -2168 5640 5340 1977 203 68 0 chr9 14484914 14485313 -103377314 + MSTB LTR MaLR 1 426 0 8054 190 18 11 chr9 14485313 14486948 -103375679 + MSTB-int LTR MaLR 1 1646 -5 2211 182 65 2 chr9 14486953 14487354 -103375273 + MSTB LTR MaLR 1 426 0 457 174 20 20 chr9 14488329 14488427 -103374200 - MLT1A1 LTR MaLR -267 98 1 562 301 76 10 chr9 14488768 14489057 -103373570 + HAL1 LINE L1 13 320 -2187 408 213 19 38 chr9 14489605 14489765 -103372862 - L1MC4 LINE L1 -195 7847 7691 226 254 261 8 chr9 14490260 14490394 -103372233 + MIR SINE MIR 48 215 -47 332 313 67 17 chr9 14491194 14491347 -103371280 - L1MEd LINE L1 -3324 2805 2661 1148 247 0 8 chr9 14491347 14491586 -103371041 + MER8 DNA MER2_type 1 237 -2 332 313 67 17 chr9 14491586 14491777 -103370850 - L1MEd LINE L1 -3468 2661 2444 233 331 38 12 chr9 14492427 14492587 -103370040 - HAL1 LINE L1 -937 1570 1407 1795 290 91 32 chr9 14492592 14493725 -103368902 - L1MEd LINE L1 -4862 1257 58 6800 129 52 5 chr9 14494209 14495385 -103367242 - Tigger3b DNA MER2_type 0 1231 1 1130 154 10 5 chr9 14495550 14495751 -103366876 + L1PA16 LINE L1 5949 6150 -16 1608 206 7 17 chr9 14495815 14496107 -103366520 + AluJo SINE Alu 1 289 -23 656 348 165 30 chr9 14496605 14497477 -103365150 + L2 LINE L2 1768 2757 -557 252 301 12 24 chr9 14497502 14497595 -103365032 - MER5A DNA MER1_type -73 116 14 271 392 97 17 chr9 14497746 14497922 -103364705 + L2 LINE L2 2902 3091 -181 195 336 42 17 chr9 14498134 14498253 -103364374 + MIR3 SINE MIR 46 167 -41 627 210 51 27 chr9 14498270 14498527 -103364100 - L1MC5 LINE L1 -34 7927 7665 2090 164 11 14 chr9 14498647 14499012 -103363615 + THE1B LTR MaLR 1 364 0 10414 106 29 29 chr9 14499012 14500591 -103362036 + THE1B-int LTR MaLR 1 1579 -1 1944 137 84 23 chr9 14500592 14500935 -103361692 + THE1B LTR MaLR 1 364 0 227 131 66 49 chr9 14501180 14501241 -103361386 + MLT1I LTR MaLR 316 377 -32 2963 233 38 24 chr9 14501343 14502287 -103360340 - L1ME2 LINE L1 -12 6152 5195 242 197 70 14 chr9 14502336 14502407 -103360220 - L1MD1 LINE L1 -94 6148 6074 24 53 0 0 chr9 14502414 14502452 -103360175 + AT_rich Low_complexity Low_complexity 1 38 0 1748 247 115 37 chr9 14502556 14504032 -103358595 + L1ME1 LINE L1 4577 6161 -5 478 190 10 20 chr9 14504725 14504825 -103357802 - MIR SINE MIR -70 192 94 2681 10 3 0 chr9 14505432 14505727 -103356900 + AluY SINE Alu 1 296 -15 342 223 18 9 chr9 14505944 14506056 -103356571 + GA-rich Low_complexity Low_complexity 3 115 0 277 316 59 37 chr9 14506145 14506281 -103356346 + MIR SINE MIR 78 216 -46 198 0 0 0 chr9 14507493 14507515 -103355112 + (CAT)n Simple_repeat Simple_repeat 2 23 0 426 314 38 35 chr9 14507885 14508093 -103354534 + MIR SINE MIR 5 216 -46 2046 138 21 13 chr9 14508098 14508481 -103354146 - Charlie5 DNA MER1_type 0 2619 2234 682 158 0 0 chr9 14508485 14508599 -103354028 - MER3 DNA MER1_type -41 168 55 233 213 21 0 chr9 14508601 14508648 -103353979 + MIR SINE MIR 203 250 -12 5633 163 71 17 chr9 14509057 14511073 -103351554 + L1MA7 LINE L1 4133 6258 -33 1407 189 84 0 chr9 14513342 14513617 -103349010 - LTR40a LTR ERVL 0 519 222 25 51 0 0 chr9 14513841 14513880 -103348747 + AT_rich Low_complexity Low_complexity 1 39 0 388 313 110 57 chr9 14513950 14514177 -103348450 - MIR SINE MIR -23 239 1 2717 107 8 0 chr9 14514460 14514845 -103347782 + L1PA15 LINE L1 5773 6160 -5 2655 22 0 22 chr9 14516177 14516495 -103346132 + AluY SINE Alu 1 311 0 309 313 156 36 chr9 14516854 14517046 -103345581 - MIR SINE MIR -46 216 2 567 296 60 28 chr9 14517983 14518199 -103344428 - MIR SINE MIR -11 251 29 336 230 55 145 chr9 14519514 14519714 -103342913 - MIR SINE MIR 0 262 81 228 288 68 83 chr9 14519882 14520014 -103342613 - L2 LINE L2 0 3272 3143 303 294 184 28 chr9 14520226 14520444 -103342183 - MIR SINE MIR -5 257 6 1821 209 9 4 chr9 14520784 14521132 -103341495 - MLT1A1 LTR MaLR 0 365 1 229 338 0 0 chr9 14522157 14522234 -103340393 - MIR SINE MIR -6 256 180 228 325 63 8 chr9 14522652 14522778 -103339849 + MER5A DNA MER1_type 13 145 -44 1259 276 147 58 chr9 14523102 14524270 -103338357 - HAL1 LINE L1 -6 2501 1230 280 304 95 48 chr9 14524614 14524782 -103337845 + MER5B DNA MER1_type 2 177 -1 246 241 277 27 chr9 14526791 14526903 -103335724 - MIR SINE MIR -70 192 53 22 35 0 0 chr9 14527028 14527057 -103335570 + AT_rich Low_complexity Low_complexity 1 29 0 201 214 0 36 chr9 14528366 14528422 -103334205 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 342 303 76 14 chr9 14528523 14528668 -103333959 - MIR SINE MIR -61 201 48 2304 65 3 3 chr9 14530070 14530363 -103332264 + AluY SINE Alu 19 311 0 293 170 0 0 chr9 14530393 14530446 -103332181 - L1MB7 LINE L1 -65 6119 6067 533 239 83 61 chr9 14530449 14530713 -103331914 + MER113 DNA MER1_type? 131 400 -121 441 258 148 105 chr9 14530963 14531192 -103331435 + MLT1G LTR MaLR 348 581 -9 439 281 7 22 chr9 14531209 14531344 -103331283 - MER94 DNA DNA 0 134 2 22 0 0 0 chr9 14531537 14531559 -103331068 + AT_rich Low_complexity Low_complexity 1 22 0 780 239 53 5 chr9 14531827 14532015 -103330612 - MIR SINE MIR -50 212 16 7301 173 55 20 chr9 14532427 14534923 -103327704 - L1MA5 LINE L1 0 7362 4779 2391 159 14 42 chr9 14534923 14535312 -103327315 - MSTC LTR MaLR -2 426 49 1688 167 35 0 chr9 14535312 14535599 -103327028 + AluJb SINE Alu 1 297 -15 2391 159 14 42 chr9 14535599 14535643 -103326984 - MSTC LTR MaLR -379 49 5 2327 203 28 4 chr9 14535647 14536154 -103326473 - L1MA5 LINE L1 -2423 4785 4267 854 192 13 6 chr9 14536200 14536356 -103326271 + Tigger1 DNA MER2_type 1 157 -2261 * 1100 143 64 0 chr9 14536345 14536548 -103326079 + Tigger1 DNA MER2_type 2202 2417 -1 4104 189 33 42 chr9 14536550 14537435 -103325192 - L1MA5 LINE L1 -2988 4220 3347 2315 48 48 10 chr9 14537435 14537729 -103324898 - AluY SINE Alu -4 307 3 4104 189 33 42 chr9 14537729 14538040 -103324587 - L1MA5 LINE L1 -3861 3347 3035 3520 173 80 1 chr9 14538050 14538715 -103323912 - Tigger1 DNA MER2_type 0 2418 1702 1274 142 28 5 chr9 14538725 14538937 -103323690 - Tigger1 DNA MER2_type -2178 240 24 2700 175 55 18 chr9 14538942 14539137 -103323490 - L1MA5 LINE L1 -4186 3023 2837 1812 165 7 16 chr9 14539137 14539446 -103323181 - AluJb SINE Alu -4 308 3 2700 175 55 18 chr9 14539446 14539798 -103322829 - L1MA5 LINE L1 -4372 2837 2456 1845 283 109 41 chr9 14539792 14540788 -103321839 - L1MA5 LINE L1 -5525 1684 1 * 1990 128 3 7 chr9 14540878 14541166 -103321461 + AluSx SINE Alu 1 287 -25 655 245 131 38 chr9 14541624 14541861 -103320766 - MIR SINE MIR 0 262 4 21 36 0 0 chr9 14542495 14542523 -103320104 + AT_rich Low_complexity Low_complexity 1 28 0 440 257 92 18 chr9 14545180 14545345 -103317282 - MIR SINE MIR -44 218 47 3984 87 0 9 chr9 14545500 14546051 -103316576 + L1PA7 LINE L1 5609 6154 0 362 360 74 0 chr9 14546732 14546907 -103315720 + MIR SINE MIR 1 188 -74 467 304 91 42 chr9 14546941 14547236 -103315391 + MLT1J LTR MaLR 17 297 -149 531 304 90 36 chr9 14547543 14547931 -103314696 + MLT1J2 LTR MaLR 17 425 -25 11912 201 51 24 chr9 14548685 14553401 -103309226 + L1M3 LINE L1 17 4900 -1519 7268 47 0 1 chr9 14553401 14554330 -103308297 + L1PA6 LINE L1 5222 6149 -5 11912 201 51 24 chr9 14554330 14555129 -103307498 + L1M3 LINE L1 4900 5676 -743 869 145 8 0 chr9 14555130 14555254 -103307373 + FLAM_C SINE Alu 1 125 -18 31 0 0 0 chr9 14555254 14555285 -103307342 + AT_rich Low_complexity Low_complexity 1 31 0 196 286 214 0 chr9 14555437 14555549 -103307078 - MIR SINE MIR 0 262 127 316 311 54 24 chr9 14555562 14555729 -103306898 - MIR SINE MIR -60 202 31 2749 216 10 0 chr9 14556500 14557119 -103305508 - L1P LINE L1 -3048 3098 2474 2157 129 3 0 chr9 14557184 14557495 -103305132 + AluSx SINE Alu 1 312 0 185 326 22 45 chr9 14557881 14557970 -103304657 - L2 LINE L2 0 3272 3186 251 285 38 111 chr9 14558404 14558639 -103303988 - MIR SINE MIR -28 234 17 5562 122 20 2 chr9 14559047 14559892 -103302735 + L1PA15 LINE L1 5294 6153 -12 622 298 57 20 chr9 14564372 14564620 -103298007 - MIR SINE MIR -1 261 5 547 276 138 0 chr9 14565861 14566042 -103296585 - MIR SINE MIR 0 262 57 1570 125 153 3 chr9 14566558 14566853 -103295774 + MER44D DNA MER2_type 1 609 0 938 209 6 11 chr9 14566949 14567319 -103295308 + GA-rich Low_complexity Low_complexity 1 368 0 535 264 0 0 chr9 14567969 14568090 -103294537 - MER94 DNA DNA -10 124 4 322 275 69 15 chr9 14568162 14568293 -103294334 + MIR SINE MIR 75 212 -50 204 398 79 45 chr9 14569876 14570296 -103292331 + L2 LINE L2 2831 3264 -8 202 300 38 25 chr9 14570323 14570403 -103292224 + MIR3 SINE MIR 9 89 -119 2234 248 45 45 chr9 14570412 14571260 -103291367 + L1M4 LINE L1 3356 4203 -1943 7114 50 7 0 chr9 14571420 14572995 -103289632 + L1PA5 LINE L1 4568 6148 -6 418 204 21 175 chr9 14573475 14573715 -103288912 - MIR SINE MIR -6 256 54 332 272 15 92 chr9 14573736 14573942 -103288685 + L1MC5 LINE L1 7736 7925 -36 1801 57 0 4 chr9 14574560 14574787 -103287840 - AluY SINE Alu 0 311 86 235 251 166 91 chr9 14574893 14575080 -103287547 + MIR SINE MIR 28 228 -34 2042 199 18 0 chr9 14576631 14577087 -103285540 - MLT2B1 LTR ERVL 0 520 5 296 397 55 0 chr9 14577171 14577317 -103285310 + MER91A DNA MER1_type 21 174 -22 489 152 45 15 chr9 14577797 14577999 -103284628 - MER58B DNA MER1_type 0 341 72 3554 123 53 10 chr9 14578009 14578338 -103284289 - L1PB4 LINE L1 -20 6136 5770 473 31 0 16 chr9 14578338 14578402 -103284225 + (TG)n Simple_repeat Simple_repeat 2 64 0 3554 123 53 10 chr9 14578402 14578656 -103283971 - L1PB4 LINE L1 -386 5770 5528 245 163 47 0 chr9 14578659 14578702 -103283925 - MER58B DNA MER1_type -253 88 44 604 270 72 14 chr9 14578990 14579289 -103283338 + MLT1J2 LTR MaLR 1 332 -118 206 163 61 0 chr9 14579758 14579807 -103282820 - L3 LINE CR1 -334 1243 1192 437 364 61 4 chr9 14580259 14580490 -103282137 + MIR SINE MIR 19 262 0 * 439 253 101 13 chr9 14580455 14580613 -103282014 - MIR SINE MIR -79 183 12 636 221 101 40 chr9 14581234 14581410 -103281217 + MIR SINE MIR 31 222 -40 2199 119 0 0 chr9 14581410 14581712 -103280915 - AluSq SINE Alu -11 302 1 636 221 101 40 chr9 14581712 14581734 -103280893 + MIR SINE MIR 222 241 -21 207 127 0 56 chr9 14582343 14582414 -103280213 + (TTA)n Simple_repeat Simple_repeat 1 67 0 180 0 0 0 chr9 14582822 14582842 -103279785 + (A)n Simple_repeat Simple_repeat 1 20 0 359 377 41 0 chr9 14584485 14584631 -103277996 + L2 LINE L2 3121 3272 0 23 0 0 0 chr9 14586491 14586514 -103276113 + AT_rich Low_complexity Low_complexity 1 23 0 234 281 78 0 chr9 14587708 14587772 -103274855 + MIR3 SINE MIR 114 182 -26 1436 105 0 0 chr9 14588120 14588311 -103274316 - LOR1a LTR ERV1 0 497 307 288 307 11 0 chr9 14588768 14588856 -103273771 - MIR3 SINE MIR 0 208 120 431 316 65 39 chr9 14639316 14639623 -103223004 - L1M4 LINE L1 -1085 5061 4747 481 316 61 70 chr9 14639650 14640062 -103222565 - L1M4 LINE L1 -2215 3931 3524 285 296 139 0 chr9 14640763 14640871 -103221756 - MER5C DNA MER1_type -201 123 1 1898 171 0 3 chr9 14641319 14641612 -103221015 - AluJo SINE Alu -20 292 1 22 35 0 0 chr9 14641849 14641878 -103220749 + AT_rich Low_complexity Low_complexity 1 29 0 268 281 22 0 chr9 14642288 14642377 -103220250 - L1ME LINE L1 -306 5815 5725 12725 153 17 22 chr9 14644036 14646303 -103216324 + Tigger1 DNA MER2_type 1 2254 -164 919 161 6 0 chr9 14646407 14646568 -103216059 - MLT1A2 LTR MaLR -212 162 1 541 281 64 10 chr9 14647861 14648064 -103214563 + MIR SINE MIR 49 262 0 1012 280 37 11 chr9 14650585 14650939 -103211688 - L1MC4a LINE L1 -1950 5858 5496 903 295 120 35 chr9 14651175 14651749 -103210878 - L2 LINE L2 -4 3309 2696 2002 136 3 0 chr9 14651763 14652049 -103210578 - AluSx SINE Alu -25 287 1 675 319 32 39 chr9 14652060 14652155 -103210472 - L2 LINE L2 -768 2546 2452 3711 138 3 0 chr9 14652155 14652727 -103209900 + L1PA16 LINE L1 5584 6157 -9 675 319 32 39 chr9 14652727 14652941 -103209686 - L2 LINE L2 -862 2452 2239 228 271 176 0 chr9 14652962 14653047 -103209580 - MIR SINE MIR -57 205 106 819 134 0 0 chr9 14653170 14653289 -103209338 + AluSg/x SINE Alu 190 308 -4 281 320 95 35 chr9 14653900 14654100 -103208527 + MIR SINE MIR 50 261 -1 39 38 0 0 chr9 14654274 14654327 -103208300 + AT_rich Low_complexity Low_complexity 1 53 0 258 287 19 19 chr9 14654411 14654519 -103208108 - Charlie1 DNA MER1_type -299 2462 2355 1464 205 57 10 chr9 14655429 14655609 -103207018 - AluJb SINE Alu 0 312 111 1043 75 0 7 chr9 14655609 14655756 -103206871 + (TTTC)n Simple_repeat Simple_repeat 3 148 0 1464 205 57 10 chr9 14655756 14655873 -103206754 - AluJb SINE Alu -201 111 1 891 276 94 54 chr9 14655876 14656543 -103206084 - L2 LINE L2 -10 3303 2602 2185 72 52 0 chr9 14658565 14658855 -103203772 + AluSp SINE Alu 1 305 -8 454 229 76 0 chr9 14658957 14659062 -103203565 + MER94 DNA DNA 1 113 -21 2205 97 0 0 chr9 14659064 14659375 -103203252 + AluSq SINE Alu 1 311 0 364 295 180 0 chr9 14659433 14659572 -103203055 + MIR SINE MIR 65 228 -34 4473 132 4 25 chr9 14660446 14661130 -103201497 - HSMAR1 DNA Mariner -201 1086 417 15946 52 2 2 chr9 14661130 14663115 -103199512 + L1P LINE L1 622 2607 -3539 5397 38 0 2 chr9 14663250 14663860 -103198767 + L1PA4 LINE L1 5547 6155 0 2947 95 11 32 chr9 14663865 14663968 -103198659 - HSMAR1 DNA Mariner -854 433 329 1995 161 0 0 chr9 14663968 14664272 -103198355 - AluSx SINE Alu -8 304 1 2947 95 11 32 chr9 14664272 14664601 -103198026 - HSMAR1 DNA Mariner -958 329 10 279 337 43 27 chr9 14665318 14665505 -103197122 + MLT1J2 LTR MaLR 261 450 0 444 302 52 38 chr9 14665627 14665839 -103196788 - LTR16A LTR ERVL -220 230 16 290 340 14 14 chr9 14665978 14666125 -103196502 - HERVL LTR ERVL -327 5327 5181 694 346 57 15 chr9 14666226 14666818 -103195809 - HERVL LTR ERVL -498 4987 4500 1288 351 45 18 chr9 14666878 14667666 -103194961 - HERVL LTR ERVL -1283 4371 3613 323 337 127 39 chr9 14667665 14667870 -103194757 - HERV16 LTR ERVL -3189 1807 1585 * 361 121 17 0 chr9 14667909 14667967 -103194660 - LTR10B LTR ERV1 -2 545 487 652 312 5 0 chr9 14668260 14668459 -103194168 - HERV16 LTR ERVL -3677 1319 1120 714 320 46 12 chr9 14668490 14668749 -103193878 - LTR16A LTR ERVL -122 328 61 332 328 110 69 chr9 14668838 14669201 -103193426 + L2 LINE L2 2895 3272 0 294 146 0 0 chr9 14670176 14670231 -103192396 + LTR1 LTR ERV1 8 62 -723 189 0 0 0 chr9 14670233 14670254 -103192373 + (G)n Simple_repeat Simple_repeat 1 21 0 2840 105 5 5 chr9 14670356 14670765 -103191862 + LTR1 LTR ERV1 376 784 -1 369 275 116 7 chr9 14670892 14671030 -103191597 + MIR SINE MIR 82 234 -28 442 269 31 0 chr9 14671230 14671360 -103191267 + MIR SINE MIR 97 230 -32 405 104 15 30 chr9 14671797 14671864 -103190763 + L1MC1 LINE L1 6263 6328 -5 198 248 85 85 chr9 14672018 14672147 -103190480 - MIR SINE MIR -50 212 84 819 291 29 0 chr9 14672906 14673150 -103189477 - MIR SINE MIR 0 262 12 246 105 0 0 chr9 14673154 14673192 -103189435 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 347 333 9 9 chr9 14674066 14674180 -103188447 + MIR3 SINE MIR 76 189 -19 286 56 19 37 chr9 14674517 14674571 -103188056 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 2140 92 7 0 chr9 14674574 14674846 -103187781 - AluSx SINE Alu -37 275 2 328 309 41 24 chr9 14675522 14675645 -103186982 + MIR SINE MIR 21 145 -117 2271 94 0 7 chr9 14676091 14676388 -103186239 - AluSg SINE Alu -15 295 1 380 284 83 69 chr9 14676388 14676751 -103185876 - L1ME4a LINE L1 -292 5829 5462 23 0 0 0 chr9 14676757 14676780 -103185847 + AT_rich Low_complexity Low_complexity 1 23 0 252 302 145 19 chr9 14677435 14677594 -103185033 - MIR SINE MIR -12 250 72 2241 101 0 3 chr9 14678575 14678871 -103183756 + AluY SINE Alu 3 297 -14 220 233 0 0 chr9 14678942 14678985 -103183642 + MIR SINE MIR 216 258 -4 348 243 6 127 chr9 14679322 14679495 -103183132 + L2 LINE L2 3112 3263 -50 333 365 74 17 chr9 14679969 14680199 -103182428 - MLT1J LTR MaLR -23 488 246 399 266 24 16 chr9 14680242 14680366 -103182261 - MLT1J LTR MaLR -328 183 59 277 356 0 0 chr9 14681059 14681174 -103181453 + CT-rich Low_complexity Low_complexity 2 116 0 1840 230 42 20 chr9 14681687 14682135 -103180492 + MER70A LTR ERVL 15 472 0 189 366 14 0 chr9 14682293 14682364 -103180263 + MIR SINE MIR 69 140 -122 873 307 71 24 chr9 14682625 14683006 -103179621 - MLT1I LTR MaLR -10 399 1 509 276 110 12 chr9 14683534 14683697 -103178930 + MIR3 SINE MIR 24 202 -6 372 225 90 11 chr9 14684444 14684533 -103178094 + MIR SINE MIR 85 180 -82 2189 117 0 3 chr9 14684925 14685225 -103177402 - AluSx SINE Alu -11 301 3 468 155 14 0 chr9 14686198 14686269 -103176358 - AluJ/FLAM SINE Alu -236 76 5 998 170 0 50 chr9 14686333 14686533 -103176094 - AluJo SINE Alu -118 194 5 1575 161 37 111 chr9 14686656 14687060 -103175567 - MLT1A2 LTR MaLR 0 374 1 21 0 0 0 chr9 14687210 14687231 -103175396 + AT_rich Low_complexity Low_complexity 1 21 0 264 226 0 0 chr9 14688048 14688101 -103174526 + MIR SINE MIR 107 159 -103 499 272 103 22 chr9 14688323 14688507 -103174120 + MIR3 SINE MIR 3 201 -7 249 291 183 23 chr9 14690800 14690975 -103171652 - L2 LINE L2 -34 3279 3077 260 307 44 73 chr9 14691314 14691451 -103171176 - MER5B DNA MER1_type -38 140 8 490 297 39 28 chr9 14692051 14692233 -103170394 - MIR3 SINE MIR -7 201 18 597 295 93 79 chr9 14692863 14693182 -103169445 + MLT1J LTR MaLR 1 331 -180 1767 157 39 0 chr9 14693182 14693468 -103169159 + AluJb SINE Alu 1 297 -15 597 295 93 79 chr9 14693468 14693619 -103169008 + MLT1J LTR MaLR 331 478 -33 441 289 16 8 chr9 14694730 14694851 -103167776 - MIR SINE MIR -135 127 6 446 157 0 11 chr9 14695530 14695619 -103167008 + GA-rich Low_complexity Low_complexity 4 91 0 234 0 0 0 chr9 14696249 14696275 -103166352 + (CA)n Simple_repeat Simple_repeat 2 27 0 1613 159 59 14 chr9 14696496 14696786 -103165841 - AluSx SINE Alu -9 303 1 225 0 0 0 chr9 14697014 14697039 -103165588 + (A)n Simple_repeat Simple_repeat 1 25 0 553 280 155 19 chr9 14697347 14697554 -103165073 - MIR SINE MIR 0 262 28 233 204 0 0 chr9 14700848 14700892 -103161735 + (CA)n Simple_repeat Simple_repeat 2 45 0 494 216 27 27 chr9 14703122 14703233 -103159394 - MIR SINE MIR -80 182 72 884 223 27 0 chr9 14703721 14703905 -103158722 - MER5A DNA MER1_type 0 189 1 238 263 62 12 chr9 14703939 14704019 -103158608 + L2 LINE L2 2702 2785 -529 618 206 46 8 chr9 14704598 14704729 -103157898 + MER45A DNA AcHobo 1 136 -42 376 344 38 5 chr9 14706136 14706322 -103156305 + MIR SINE MIR 70 261 -1 22 70 0 0 chr9 14706521 14706564 -103156063 + AT_rich Low_complexity Low_complexity 1 43 0 489 34 0 0 chr9 14706807 14706866 -103155761 + (TC)n Simple_repeat Simple_repeat 2 60 0 405 0 0 0 chr9 14706865 14706910 -103155717 + (TG)n Simple_repeat Simple_repeat 2 46 0 * 2416 92 3 0 chr9 14707697 14708000 -103154627 + AluSp SINE Alu 1 304 -9 207 0 0 0 chr9 14709700 14709723 -103152904 + (A)n Simple_repeat Simple_repeat 1 23 0 396 0 0 0 chr9 14711161 14711205 -103151422 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 224 12 24 chr9 14711763 14711848 -103150779 - MIR SINE MIR -104 158 75 191 296 19 0 chr9 14712193 14712247 -103150380 + MIR3 SINE MIR 100 154 -54 325 161 0 16 chr9 14712581 14712643 -103149984 + MLT1E1 LTR MaLR 3 63 -591 1857 158 26 3 chr9 14712841 14713144 -103149483 + AluJb SINE Alu 3 312 0 371 226 161 91 chr9 14714093 14714166 -103148461 - L1ME1 LINE L1 -5 6161 6095 1702 171 34 0 chr9 14714166 14714458 -103148169 - AluSx SINE Alu -10 302 1 371 226 161 91 chr9 14714458 14714583 -103148044 - L1ME1 LINE L1 -71 6095 5949 1765 151 7 0 chr9 14715689 14715980 -103146647 - L1MB2 LINE L1 -1 6170 5878 357 244 161 6 chr9 14716159 14716327 -103146300 - L1M4 LINE L1 -2218 3928 3735 414 284 148 13 chr9 14716620 14716775 -103145852 - MER5A DNA MER1_type -4 185 10 702 232 11 17 chr9 14716787 14716964 -103145663 + MER5B DNA MER1_type 2 177 -1 314 278 60 22 chr9 14716978 14717148 -103145479 - L1M4 LINE L1 -2682 3464 3302 1848 157 36 12 chr9 14717148 14717485 -103145142 + MER7A DNA MER2_type 3 345 -1 314 278 60 22 chr9 14717485 14717684 -103144943 - L1M4 LINE L1 -2844 3302 3081 414 333 79 12 chr9 14717715 14717967 -103144660 - L1M4 LINE L1 -3195 2951 2683 228 246 91 70 chr9 14718218 14718405 -103144222 - L1M4 LINE L1 -3813 2333 2143 272 283 26 0 chr9 14718416 14718529 -103144098 + T-rich Low_complexity Low_complexity 2 117 0 317 325 169 0 chr9 14718599 14718759 -103143868 - MIR SINE MIR -71 191 5 24 85 0 0 chr9 14718879 14718938 -103143689 + AT_rich Low_complexity Low_complexity 1 59 0 234 289 64 72 chr9 14719332 14719567 -103143060 + L1ME4a LINE L1 3880 4112 -2034 1168 251 85 54 chr9 14719671 14720248 -103142379 + L1ME4a LINE L1 5392 5986 -135 237 108 0 0 chr9 14720850 14720887 -103141740 + (T)n Simple_repeat Simple_repeat 1 37 0 253 250 50 38 chr9 14720968 14721048 -103141579 + MIR SINE MIR 122 202 -60 375 231 0 13 chr9 14721169 14721247 -103141380 - L3 LINE CR1 -263 1314 1238 200 353 30 68 chr9 14723122 14723255 -103139372 - L2 LINE L2 -20 3252 3125 1860 107 0 0 chr9 14723566 14723850 -103138777 - AluSg SINE Alu 0 322 39 504 279 29 47 chr9 14724595 14724767 -103137860 - MIR SINE MIR -86 176 8 1920 166 45 20 chr9 14728549 14728946 -103133681 - L1MA4 LINE L1 -11 6289 5883 188 241 207 11 chr9 14730286 14730373 -103132254 + L2 LINE L2 3169 3272 0 483 243 43 21 chr9 14730498 14730638 -103131989 - MIR SINE MIR -6 256 114 758 41 41 0 chr9 14730788 14730885 -103131742 - L1MA3 LINE L1 -47 6258 6158 232 178 22 0 chr9 14731607 14731662 -103130965 + (TAGG)n Simple_repeat Simple_repeat 1 56 0 403 319 64 43 chr9 14733021 14733209 -103129418 + MIR3 SINE MIR 16 207 -1 22 35 0 0 chr9 14733276 14733305 -103129322 + AT_rich Low_complexity Low_complexity 1 29 0 1616 170 50 20 chr9 14733307 14733607 -103129020 + AluJb SINE Alu 3 311 -1 1778 177 0 7 chr9 14733777 14734082 -103128545 + AluJb SINE Alu 1 303 -9 21 36 0 0 chr9 14734210 14734238 -103128389 + AT_rich Low_complexity Low_complexity 1 28 0 526 326 38 21 chr9 14734252 14734488 -103128139 - MIR SINE MIR -2 260 21 1280 169 0 14 chr9 14735849 14736068 -103126559 + AluJb SINE Alu 85 300 -12 388 354 123 34 chr9 14736629 14737179 -103125448 + L2 LINE L2 2657 3267 -5 378 0 0 0 chr9 14737685 14737727 -103124900 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 57 0 0 chr9 14738722 14738757 -103123870 + AT_rich Low_complexity Low_complexity 1 35 0 2034 125 75 20 chr9 14739245 14739590 -103123037 - THE1B LTR MaLR 0 364 1 216 0 0 0 chr9 14739792 14739816 -103122811 + (T)n Simple_repeat Simple_repeat 1 24 0 341 176 0 14 chr9 14739822 14739896 -103122731 - LTR30 LTR ERV1 -98 624 552 1613 171 0 4 chr9 14740793 14741067 -103121560 - AluJb SINE Alu -39 273 1 230 217 0 0 chr9 14741195 14741241 -103121386 + MER103 DNA DNA 76 121 -45 204 273 236 18 chr9 14742428 14742538 -103120089 - MIR3 SINE MIR -10 198 65 198 103 0 0 chr9 14742797 14742826 -103119801 + (CA)n Simple_repeat Simple_repeat 2 30 0 667 276 94 15 chr9 14742987 14743389 -103119238 - L1MC5 LINE L1 -76 7885 7452 434 288 167 9 chr9 14743476 14743691 -103118936 - MIR SINE MIR -13 249 1 24 32 0 0 chr9 14743975 14744006 -103118621 + AT_rich Low_complexity Low_complexity 1 31 0 292 313 122 9 chr9 14744084 14744199 -103118428 + MIR3 SINE MIR 74 201 -7 570 217 60 78 chr9 14746519 14746800 -103115827 - L1ME4a LINE L1 -15 6106 5831 1126 88 0 31 chr9 14746920 14747080 -103115547 - AluSx SINE Alu -157 155 1 291 303 45 19 chr9 14747086 14747241 -103115386 - L1ME4a LINE L1 -302 5819 5661 214 234 53 96 chr9 14747250 14747344 -103115283 + L2 LINE L2 3222 3311 -2 316 252 135 0 chr9 14747344 14747455 -103115172 - L1ME4a LINE L1 -472 5649 5524 258 312 0 16 chr9 14748772 14748827 -103113800 + A-rich Low_complexity Low_complexity 1 55 -68 1565 188 29 0 chr9 14748827 14749104 -103113523 + AluJo SINE Alu 3 287 -25 258 312 0 16 chr9 14749104 14749173 -103113454 + A-rich Low_complexity Low_complexity 55 123 0 258 374 61 9 chr9 14750671 14750786 -103111841 + L2 LINE L2 3137 3257 -15 23 0 0 0 chr9 14752141 14752164 -103110463 + AT_rich Low_complexity Low_complexity 1 23 0 228 86 0 0 chr9 14752267 14752302 -103110325 + (T)n Simple_repeat Simple_repeat 1 35 0 24 32 0 0 chr9 14752748 14752779 -103109848 + AT_rich Low_complexity Low_complexity 1 31 0 2280 97 10 0 chr9 14752975 14753274 -103109353 - AluSq SINE Alu -11 302 1 21 0 0 0 chr9 14753433 14753454 -103109173 + AT_rich Low_complexity Low_complexity 1 21 0 874 206 29 40 chr9 14754079 14754351 -103108276 + L1MC5 LINE L1 7659 7927 -34 313 372 58 0 chr9 14754722 14754843 -103107784 + L2 LINE L2 3145 3272 0 184 365 148 0 chr9 14755325 14755440 -103107187 + L2 LINE L2 3141 3272 0 2288 95 0 0 chr9 14756236 14756530 -103106097 + AluSg SINE Alu 3 296 -14 229 380 0 6 chr9 14757846 14758004 -103104623 + (CAGG)n Simple_repeat Simple_repeat 3 159 0 448 335 43 43 chr9 14758086 14758340 -103104287 - L2 LINE L2 -463 2851 2598 2052 115 22 26 chr9 14758410 14758723 -103103904 - AluSx SINE Alu 0 312 1 388 271 25 25 chr9 14759206 14759328 -103103299 - MER5A DNA MER1_type -4 185 64 23 0 0 0 chr9 14759910 14759933 -103102694 + AT_rich Low_complexity Low_complexity 1 23 0 185 0 40 0 chr9 14760361 14760386 -103102241 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 185 0 40 0 chr9 14760408 14760433 -103102194 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 1850 123 0 4 chr9 14760449 14760709 -103101918 - AluSq SINE Alu -54 259 1 210 71 0 0 chr9 14762905 14762933 -103099694 + (A)n Simple_repeat Simple_repeat 1 28 0 341 296 185 6 chr9 14773969 14774131 -103088496 + MIR3 SINE MIR 1 191 -17 21 36 0 0 chr9 14775682 14775710 -103086917 + AT_rich Low_complexity Low_complexity 1 28 0 992 174 45 67 chr9 14776887 14777111 -103085516 + AluJo SINE Alu 84 302 -10 1977 134 24 3 chr9 14777478 14777768 -103084859 + AluSx SINE Alu 3 298 -14 2321 40 0 20 chr9 14780966 14781263 -103081364 - AluY SINE Alu -20 291 1 1948 142 10 3 chr9 14781590 14781899 -103080728 - AluSx SINE Alu -1 311 1 303 93 0 0 chr9 14783796 14783839 -103078788 + (A)n Simple_repeat Simple_repeat 1 43 0 227 154 0 19 chr9 14784025 14784077 -103078550 + (TG)n Simple_repeat Simple_repeat 2 52 0 943 280 21 4 chr9 14787517 14787760 -103074867 + MIR SINE MIR 8 254 -8 23 33 0 0 chr9 14788129 14788159 -103074468 + AT_rich Low_complexity Low_complexity 1 30 0 313 358 119 11 chr9 14788977 14789153 -103073474 - L3 LINE CR1 -40 1537 1343 490 282 118 9 chr9 14789183 14789375 -103073252 + MIR SINE MIR 35 243 -19 241 310 14 14 chr9 14789561 14789632 -103072995 - L3 LINE CR1 -482 1095 1025 22 0 0 0 chr9 14790366 14790388 -103072239 + AT_rich Low_complexity Low_complexity 1 22 0 193 222 0 0 chr9 14791658 14791694 -103070933 - L2 LINE L2 -22 3291 3256 26 0 0 0 chr9 14793522 14793548 -103069079 + AT_rich Low_complexity Low_complexity 1 26 0 270 160 0 0 chr9 14794084 14794134 -103068493 + A-rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 14794205 14794226 -103068401 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 14794794 14794815 -103067812 + AT_rich Low_complexity Low_complexity 1 21 0 216 86 0 0 chr9 14794882 14794917 -103067710 + (A)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr9 14795413 14795442 -103067185 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 14797382 14797403 -103065224 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr9 14798189 14798210 -103064417 + (T)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr9 14798578 14798603 -103064024 + AT_rich Low_complexity Low_complexity 1 25 0 195 42 0 0 chr9 14798895 14798919 -103063708 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr9 14799456 14799477 -103063150 + AT_rich Low_complexity Low_complexity 1 21 0 1843 129 0 11 chr9 14800958 14801230 -103061397 + AluJb SINE Alu 44 312 0 382 340 75 16 chr9 14801312 14801500 -103061127 + MIR SINE MIR 33 231 -31 3095 160 2 4 chr9 14801897 14802402 -103060225 - MER44D DNA MER2_type -44 561 3 760 284 22 18 chr9 14804392 14804621 -103058006 + MIR SINE MIR 16 245 -17 414 0 0 0 chr9 14806179 14806225 -103056402 + (CA)n Simple_repeat Simple_repeat 1 46 0 21 0 0 0 chr9 14806777 14806798 -103055829 + AT_rich Low_complexity Low_complexity 1 21 0 439 287 0 0 chr9 14807188 14807289 -103055338 + MER5A DNA MER1_type 9 109 -80 211 205 0 0 chr9 14808182 14808221 -103054406 - L2 LINE L2 -3 3310 3272 775 299 111 0 chr9 14808223 14808457 -103054170 + MIR SINE MIR 3 262 0 321 332 126 41 chr9 14808432 14809098 -103053529 - L2 LINE L2 -7 3306 2499 * 654 300 25 17 chr9 14812711 14812951 -103049676 + MLT1J LTR MaLR 111 352 -159 499 110 0 0 chr9 14813080 14813153 -103049474 - Alu SINE Alu -11 299 227 1523 191 0 15 chr9 14814618 14814891 -103047736 + AluJb SINE Alu 44 312 0 633 267 75 11 chr9 14814973 14815160 -103047467 + MIR SINE MIR 33 231 -31 1990 139 19 13 chr9 14816792 14817101 -103045526 + AluJb SINE Alu 1 311 -1 598 271 33 17 chr9 14818758 14818939 -103043688 - MIR SINE MIR -12 250 67 22 0 0 0 chr9 14819014 14819036 -103043591 + AT_rich Low_complexity Low_complexity 1 22 0 423 278 102 49 chr9 14819280 14819485 -103043142 - MIR SINE MIR 0 262 47 2063 134 3 3 chr9 14820382 14820687 -103041940 - AluSc SINE Alu -4 305 1 414 240 53 73 chr9 14821312 14821431 -103041196 + MIR SINE MIR 92 209 -53 2415 96 3 0 chr9 14821431 14821743 -103040884 + AluSp SINE Alu 1 313 0 414 240 53 73 chr9 14821743 14821773 -103040854 + MIR SINE MIR 209 238 -24 208 263 348 0 chr9 14823256 14823374 -103039253 + MIR SINE MIR 2 160 -102 287 181 95 31 chr9 14823865 14823972 -103038655 + MER5B DNA MER1_type 1 178 0 280 333 135 0 chr9 14824697 14824838 -103037789 + L3 LINE CR1 1254 1413 -164 2048 145 0 0 chr9 14825013 14825303 -103037324 + AluSx SINE Alu 1 290 -22 33 25 0 0 chr9 14825316 14825356 -103037271 + AT_rich Low_complexity Low_complexity 1 40 0 287 302 155 0 chr9 14825557 14825673 -103036954 - L2 LINE L2 -181 3091 2958 908 247 28 0 chr9 14827516 14827694 -103034933 + MER5A DNA MER1_type 7 189 0 220 281 146 0 chr9 14827777 14827859 -103034768 - MIR SINE MIR -62 200 107 198 287 157 13 chr9 14828020 14828112 -103034515 + MIR SINE MIR 60 147 -61 203 227 15 15 chr9 14828648 14828714 -103033913 + (TA)n Simple_repeat Simple_repeat 1 66 0 347 192 87 19 chr9 14828714 14828818 -103033809 - L1MCa LINE L1 -4321 2105 1995 192 40 0 0 chr9 14828829 14828854 -103033773 + (TTAGGG)n Simple_repeat Simple_repeat 4 28 0 * 536 128 34 28 chr9 14828852 14829031 -103033596 + (TA)n Simple_repeat Simple_repeat 1 180 0 300 191 90 22 chr9 14829040 14829129 -103033498 - L1MC4 LINE L1 -1340 6702 6608 1490 203 32 11 chr9 14829137 14829418 -103033209 - AluJo SINE Alu -25 287 1 730 253 29 57 chr9 14829923 14830204 -103032423 - Charlie8 DNA MER1_type -2144 273 1 2047 131 10 0 chr9 14832042 14832332 -103030295 + AluSx SINE Alu 1 293 -19 1755 174 7 4 chr9 14832863 14833144 -103029483 + AluJo SINE Alu 1 282 -30 304 385 0 8 chr9 14834243 14834373 -103028254 - L2 LINE L2 -955 2359 2231 2140 96 0 0 chr9 14835278 14835548 -103027079 - AluSg SINE Alu -17 293 24 26 82 0 0 chr9 14835912 14835973 -103026654 + AT_rich Low_complexity Low_complexity 1 61 0 258 318 0 0 chr9 14836037 14836100 -103026527 + L2 LINE L2 3246 3308 -5 2464 70 0 3 chr9 14836989 14837289 -103025338 + AluSg SINE Alu 1 299 -11 2457 68 0 16 chr9 14837667 14837977 -103024650 - AluY SINE Alu -6 305 1 192 125 0 0 chr9 14838760 14838792 -103023835 + (A)n Simple_repeat Simple_repeat 1 32 0 27 49 0 0 chr9 14839058 14839099 -103023528 + AT_rich Low_complexity Low_complexity 1 41 0 393 329 45 13 chr9 14842832 14842987 -103019640 + L3 LINE CR1 281 440 -1137 193 338 53 53 chr9 14843209 14843342 -103019285 + L2 LINE L2 3137 3269 -3 2163 121 0 3 chr9 14845556 14845853 -103016774 - AluJb SINE Alu -14 298 3 1608 129 4 12 chr9 14846902 14847143 -103015484 + AluSx SINE Alu 15 253 -59 202 289 58 0 chr9 14847143 14847195 -103015432 + L2 LINE L2 3210 3264 -8 279 275 29 0 chr9 14848271 14848340 -103014287 + MIR3 SINE MIR 135 205 -3 24 77 0 0 chr9 14848572 14848624 -103014003 + AT_rich Low_complexity Low_complexity 1 52 0 600 40 0 0 chr9 14849120 14849156 -103013471 + (TG)n Simple_repeat Simple_repeat 1 111 0 600 40 0 0 chr9 14849156 14849231 -103013396 + (TG)n Simple_repeat Simple_repeat 2 76 0 188 35 35 0 chr9 14849386 14849415 -103013212 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 392 270 122 0 chr9 14851839 14851954 -103010673 + L2 LINE L2 3183 3311 -2 967 141 0 0 chr9 14853061 14853196 -103009431 + AluSq/x SINE Alu 1 135 -177 1845 188 0 0 chr9 14853196 14853505 -103009122 + AluJb SINE Alu 1 309 -3 493 284 99 33 chr9 14854612 14855002 -103007625 + LTR33A LTR ERVL 8 475 -48 338 309 29 14 chr9 14860753 14860892 -103001735 - MER5A DNA MER1_type -5 184 44 302 317 163 46 chr9 14862760 14863637 -102998990 + L2 LINE L2 1986 2965 -349 258 326 22 22 chr9 14864088 14864180 -102998447 - L2 LINE L2 -23 3290 3199 324 0 0 0 chr9 14864303 14864339 -102998288 + (CA)n Simple_repeat Simple_repeat 1 36 0 1475 190 3 28 chr9 14967981 14968270 -102894357 - AluJb SINE Alu -30 282 1 207 0 0 0 chr9 14968593 14968616 -102894011 + (A)n Simple_repeat Simple_repeat 1 23 0 215 357 10 23 chr9 14973298 14973502 -102889125 + CT-rich Low_complexity Low_complexity 1 201 0 2034 132 3 3 chr9 14974121 14974408 -102888219 + AluSx SINE Alu 1 287 -25 2425 44 0 20 chr9 14974946 14975242 -102887385 - AluY SINE Alu -21 290 1 198 0 0 0 chr9 14977006 14977028 -102885599 + (TGGGGG)n Simple_repeat Simple_repeat 5 26 0 27 0 0 0 chr9 14977418 14977445 -102885182 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr9 14978800 14978830 -102883797 + AT_rich Low_complexity Low_complexity 1 30 0 450 325 101 5 chr9 14979216 14979404 -102883223 + MIR SINE MIR 53 258 -4 2166 102 14 0 chr9 14980168 14980462 -102882165 - AluSx SINE Alu -11 301 4 213 243 81 14 chr9 14980680 14980754 -102881873 - MIR SINE MIR -67 195 117 1343 158 150 28 chr9 14981168 14981447 -102881180 - AluSx SINE Alu 0 310 1 521 125 11 34 chr9 14981505 14981593 -102881034 + FRAM/FAM SINE Alu 1 78 -98 1238 177 156 0 chr9 14981615 14981858 -102880769 - AluJo SINE Alu -31 281 1 411 272 51 10 chr9 14982292 14982436 -102880191 + MIR SINE MIR 8 163 -45 222 37 0 0 chr9 14982987 14983014 -102879613 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 21 57 0 0 chr9 14983123 14983158 -102879469 + AT_rich Low_complexity Low_complexity 1 35 0 2326 71 0 10 chr9 14983420 14983716 -102878911 - AluSp SINE Alu -20 293 1 606 253 116 5 chr9 14983921 14984119 -102878508 - MER58A DNA MER1_type -1 223 4 1782 159 17 10 chr9 14984389 14984685 -102877942 - AluSx SINE Alu -14 298 1 2013 102 49 0 chr9 14984761 14985045 -102877582 - AluSg SINE Alu -11 299 2 218 341 11 44 chr9 14985434 14985525 -102877102 - L2 LINE L2 0 3272 3185 212 356 63 51 chr9 14986116 14986447 -102876180 - L2 LINE L2 -825 2489 2155 892 118 0 22 chr9 14986461 14986596 -102876031 + FLAM_C SINE Alu 12 143 0 539 204 0 19 chr9 14986728 14986836 -102875791 + FRAM SINE Alu 67 172 -4 565 264 58 17 chr9 14988563 14988737 -102873890 - MER5A DNA MER1_type -8 181 1 2310 100 7 0 chr9 14988976 14989277 -102873350 - AluSx SINE Alu -8 304 2 426 261 128 20 chr9 14989586 14989781 -102872846 - MIR SINE MIR -27 235 20 1297 112 25 5 chr9 14990016 14990212 -102872415 + AluSq SINE Alu 2 201 -112 1425 92 5 0 chr9 14990313 14990497 -102872130 + AluSg/x SINE Alu 117 301 -11 2376 108 0 0 chr9 14990498 14990805 -102871822 + AluY SINE Alu 1 307 -4 236 261 35 78 chr9 14991019 14991134 -102871493 + MIR SINE MIR 117 226 -36 269 159 0 0 chr9 14991756 14991800 -102870827 - Alu SINE Alu -9 293 250 231 36 0 0 chr9 14991820 14991848 -102870779 + (TATG)n Simple_repeat Simple_repeat 2 29 0 1054 189 173 21 chr9 14991848 14992091 -102870536 - AluJo SINE Alu -18 284 5 216 0 0 0 chr9 14993118 14993142 -102869485 + (T)n Simple_repeat Simple_repeat 1 24 0 216 111 0 0 chr9 14993162 14993198 -102869429 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr9 14993819 14993840 -102868787 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 14995083 14995104 -102867523 + AT_rich Low_complexity Low_complexity 1 21 0 541 302 56 22 chr9 14995144 14995323 -102867304 + MIR SINE MIR 47 231 -31 224 324 162 0 chr9 14996391 14996496 -102866131 - L2 LINE L2 -18 3295 3174 660 288 116 13 chr9 14996967 14997200 -102865427 + MIR SINE MIR 5 261 -1 24 32 0 0 chr9 15001714 15001745 -102860882 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 15001881 15001909 -102860718 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr9 15002066 15002086 -102860541 + (CAA)n Simple_repeat Simple_repeat 2 21 0 25 31 0 0 chr9 15002986 15003018 -102859609 + AT_rich Low_complexity Low_complexity 1 32 0 2092 81 61 10 chr9 15003738 15004034 -102858593 + AluSx SINE Alu 1 311 -1 211 329 13 0 chr9 15004181 15004260 -102858367 + CT-rich Low_complexity Low_complexity 3 82 0 264 30 0 0 chr9 15004694 15004727 -102857900 + (TG)n Simple_repeat Simple_repeat 2 34 0 2015 141 0 0 chr9 15004727 15005011 -102857616 - AluSx SINE Alu -28 284 1 214 226 0 19 chr9 15005971 15006024 -102856603 + (TA)n Simple_repeat Simple_repeat 1 52 0 1689 103 64 57 chr9 15006235 15006517 -102856110 - AluSx SINE Alu -28 284 1 258 281 57 0 chr9 15006517 15006618 -102856009 - MIR SINE MIR -23 185 74 1519 166 23 65 chr9 15006739 15007047 -102855580 + AluSx SINE Alu 1 295 -17 204 40 0 0 chr9 15008833 15008858 -102853769 + (TG)n Simple_repeat Simple_repeat 2 26 0 2427 58 3 0 chr9 15009792 15010086 -102852541 - AluY SINE Alu -16 295 1 809 219 7 0 chr9 15011815 15011966 -102850661 + FRAM SINE Alu 1 146 -30 22 0 0 0 chr9 15020065 15020087 -102842540 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 15020709 15020730 -102841897 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr9 15022824 15022857 -102839770 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 31 0 0 chr9 15023592 15023624 -102839003 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr9 15024161 15024185 -102838442 + AT_rich Low_complexity Low_complexity 1 24 0 192 97 0 0 chr9 15024724 15024755 -102837872 + (CGGG)n Simple_repeat Simple_repeat 3 33 0 224 208 0 0 chr9 15025533 15025581 -102837046 + CT-rich Low_complexity Low_complexity 1 48 0 186 136 0 76 chr9 15027258 15027324 -102835303 + (TCTCCC)n Simple_repeat Simple_repeat 4 64 0 21 36 0 0 chr9 15028067 15028095 -102834532 + AT_rich Low_complexity Low_complexity 1 28 0 210 118 0 0 chr9 15029449 15029483 -102833144 + (A)n Simple_repeat Simple_repeat 1 34 0 1227 110 0 0 chr9 15031025 15031189 -102831438 + AluSq SINE Alu 133 296 -17 189 0 0 0 chr9 15032688 15032709 -102829918 + (A)n Simple_repeat Simple_repeat 1 21 0 1972 121 3 25 chr9 15032781 15033095 -102829532 - AluSx SINE Alu -5 307 1 593 202 0 0 chr9 15033243 15033352 -102829275 + AluSq/x SINE Alu 1 109 -203 212 255 0 0 chr9 15036217 15036268 -102826359 + L2 LINE L2 3261 3311 -2 858 152 8 0 chr9 15036820 15036952 -102825675 + FRAM SINE Alu 14 146 -30 23 54 0 0 chr9 15036952 15036989 -102825638 + AT_rich Low_complexity Low_complexity 1 37 0 628 78 0 0 chr9 15037038 15037128 -102825499 - LTR9B LTR ERV1 -84 560 471 251 336 55 14 chr9 15037138 15037284 -102825343 - MIR SINE MIR -14 248 97 1508 178 47 25 chr9 15038241 15038517 -102824110 + AluJb SINE Alu 7 288 -24 1107 154 28 93 chr9 15038532 15038619 -102824008 - THE1B LTR MaLR -131 233 142 1834 110 3 98 chr9 15038619 15038947 -102823680 + AluSq SINE Alu 1 297 -16 1107 154 28 93 chr9 15038947 15039106 -102823521 - THE1B LTR MaLR -222 142 3 22 0 0 0 chr9 15039106 15039128 -102823499 + AT_rich Low_complexity Low_complexity 1 22 0 490 163 0 0 chr9 15039435 15039515 -102823112 + AluS SINE Alu 3 82 -231 1165 161 0 6 chr9 15039515 15039695 -102822932 + AluJb SINE Alu 129 307 -5 385 278 157 36 chr9 15039964 15040187 -102822440 + MIR SINE MIR 4 253 -9 325 156 0 131 chr9 15040599 15040650 -102821977 - L1MB4 LINE L1 0 6180 6153 1960 125 6 26 chr9 15040650 15040962 -102821665 - AluSx SINE Alu -6 306 1 325 156 0 131 chr9 15040962 15041032 -102821595 - L1MB4 LINE L1 -27 6153 6075 24 85 0 0 chr9 15042074 15042133 -102820494 + AT_rich Low_complexity Low_complexity 1 59 0 450 200 17 35 chr9 15044133 15044248 -102818379 - MER96 DNA MER1_type? -1 174 62 2208 97 3 0 chr9 15045684 15045973 -102816654 - AluSx SINE Alu -22 290 1 40 21 0 0 chr9 15047631 15047678 -102814949 + AT_rich Low_complexity Low_complexity 1 47 0 210 71 0 0 chr9 15052444 15052472 -102810155 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1645 208 69 5 chr9 15052781 15053185 -102809442 - L1MB8 LINE L1 -1 6177 5748 910 201 6 11 chr9 15054665 15054839 -102807788 - AluJb SINE Alu -29 283 111 395 91 0 15 chr9 15055343 15055409 -102807218 + (TG)n Simple_repeat Simple_repeat 1 65 0 2143 130 0 3 chr9 15056968 15057381 -102805246 - AluSq SINE Alu 0 412 1 181 222 0 0 chr9 15058914 15058950 -102803677 - MIR3 SINE MIR -39 169 134 1925 103 11 11 chr9 15059037 15059309 -102803318 + AluSg SINE Alu 1 272 -38 2115 144 7 0 chr9 15059595 15059901 -102802726 - AluSx SINE Alu -4 308 1 289 382 52 15 chr9 15059931 15060067 -102802560 - L3 LINE CR1 -430 1147 1007 249 262 19 78 chr9 15060998 15061101 -102801526 - MIR SINE MIR -119 143 47 320 285 99 41 chr9 15061191 15061349 -102801278 + MIR SINE MIR 33 208 -54 1290 186 86 34 chr9 15061349 15061676 -102800951 + MER2 DNA MER2_type 1 344 0 320 285 99 41 chr9 15061676 15061702 -102800925 + MIR SINE MIR 208 231 -31 2255 94 3 0 chr9 15061884 15062182 -102800445 - AluSp SINE Alu -14 299 1 1053 251 73 51 chr9 15062360 15062729 -102799898 - L2 LINE L2 -13 3300 2920 2272 92 7 0 chr9 15062729 15063022 -102799605 - AluSc SINE Alu -11 298 4 1053 251 73 51 chr9 15063022 15063063 -102799564 - L2 LINE L2 -393 2920 2881 280 277 0 0 chr9 15063251 15063316 -102799311 - L2 LINE L2 0 3313 3249 1653 159 9 45 chr9 15065521 15065854 -102796773 + L1MA10 LINE L1 6003 6323 -11 829 196 106 5 chr9 15066161 15066360 -102796267 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr9 15070446 15070467 -102792160 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr9 15071788 15071819 -102790808 + AT_rich Low_complexity Low_complexity 1 31 0 619 127 17 8 chr9 15074842 15074960 -102787667 + GA-rich Low_complexity Low_complexity 3 121 0 863 222 65 48 chr9 15075844 15076092 -102786535 - MIR SINE MIR -10 252 1 1639 126 18 57 chr9 15079789 15080122 -102782505 + MER33 DNA MER1_type 5 324 0 195 279 125 10 chr9 15080122 15080226 -102782401 + MIR3 SINE MIR 39 154 -54 198 0 0 0 chr9 15084904 15084926 -102777701 + (CA)n Simple_repeat Simple_repeat 2 23 0 1842 257 69 65 chr9 15087828 15088319 -102774308 - Tigger1 DNA MER2_type 0 2418 1926 463 125 25 25 chr9 15088308 15088388 -102774239 - Tigger1 DNA MER2_type -2337 81 2 * 21 0 0 0 chr9 15088454 15088475 -102774152 + AT_rich Low_complexity Low_complexity 1 21 0 230 264 66 11 chr9 15088646 15088737 -102773890 + L1ME LINE L1 5839 5934 -187 2293 92 3 0 chr9 15089003 15089296 -102773331 - AluSp SINE Alu -19 294 1 199 354 40 34 chr9 15090166 15090341 -102772286 - L2 LINE L2 -357 2957 2782 222 204 0 41 chr9 15090473 15090522 -102772105 - L2 LINE L2 -5 3267 3221 21 0 0 0 chr9 15092156 15092177 -102770450 + AT_rich Low_complexity Low_complexity 1 21 0 2395 91 0 0 chr9 15092760 15093058 -102769569 - AluY SINE Alu -13 298 1 21 0 0 0 chr9 15093692 15093713 -102768914 + AT_rich Low_complexity Low_complexity 1 21 0 2095 145 0 0 chr9 15094563 15094860 -102767767 - AluJo SINE Alu -15 297 1 29 28 0 0 chr9 15095178 15095214 -102767413 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr9 15095861 15095882 -102766745 + AT_rich Low_complexity Low_complexity 1 21 0 281 160 0 0 chr9 15096131 15096181 -102766446 - L1ME2 LINE L1 -9 6155 6106 29 0 0 0 chr9 15096665 15096694 -102765933 + AT_rich Low_complexity Low_complexity 1 29 0 690 101 0 20 chr9 15097557 15097656 -102764971 + FRAM SINE Alu 62 158 -18 494 286 132 18 chr9 15100549 15100769 -102761858 + MIR SINE MIR 4 248 -14 1307 96 0 0 chr9 15100878 15101044 -102761583 + AluSg/x SINE Alu 134 299 -13 358 254 18 36 chr9 15101179 15101289 -102761338 - MER5B DNA MER1_type -3 175 68 21 0 0 0 chr9 15103045 15103066 -102759561 + AT_rich Low_complexity Low_complexity 1 21 0 392 303 92 37 chr9 15103301 15103519 -102759108 + MIR SINE MIR 33 262 0 1471 206 58 14 chr9 15104124 15104483 -102758144 + L1ME2 LINE L1 5790 6164 0 1673 199 0 10 chr9 15106516 15106817 -102755810 - AluJb SINE Alu -14 298 1 435 259 187 6 chr9 15108034 15108200 -102754427 - MIR SINE MIR -26 236 41 2067 121 50 70 chr9 15108315 15108508 -102754119 + MLT1B LTR MaLR 1 183 -207 1724 99 0 0 chr9 15108508 15108730 -102753897 + AluSg SINE Alu 2 223 -87 2067 121 50 70 chr9 15108730 15108934 -102753693 + MLT1B LTR MaLR 183 390 0 381 22 0 0 chr9 15110118 15110164 -102752463 + (CA)n Simple_repeat Simple_repeat 2 47 0 194 0 39 0 chr9 15113561 15113587 -102749040 + (TC)n Simple_repeat Simple_repeat 1 27 0 21 57 0 0 chr9 15113888 15113923 -102748704 + AT_rich Low_complexity Low_complexity 1 35 0 515 292 64 28 chr9 15113931 15114152 -102748475 - MIR SINE MIR 0 262 36 1134 155 0 22 chr9 15114166 15114347 -102748280 - AluJb SINE Alu -2 310 134 272 248 18 71 chr9 15114880 15114993 -102747634 + L2 LINE L2 3124 3230 -83 192 293 98 38 chr9 15115054 15115187 -102747440 + MIR SINE MIR 110 250 -12 186 313 0 48 chr9 15115326 15115409 -102747218 - MIR SINE MIR -49 213 135 22 0 0 0 chr9 15115535 15115557 -102747070 + AT_rich Low_complexity Low_complexity 1 22 0 1437 120 60 0 chr9 15216160 15216377 -102646250 + MER30 DNA MER1_type 1 230 0 920 211 68 77 chr9 15217654 15217990 -102644637 - MER2 DNA MER2_type -12 333 1 945 206 30 0 chr9 15218111 15218360 -102644267 - L1MA8 LINE L1 -130 6161 5903 1274 14 0 0 chr9 15218536 15218680 -102643947 + AluYa5/8 SINE Alu 167 310 0 1766 181 3 3 chr9 15219459 15219758 -102642869 + AluJb SINE Alu 1 299 -13 2084 132 7 10 chr9 15220051 15220361 -102642266 + AluSq SINE Alu 1 309 -4 231 295 162 9 chr9 15220502 15220607 -102642020 + L2 LINE L2 3151 3271 -1 23 0 0 0 chr9 15220797 15220820 -102641807 + AT_rich Low_complexity Low_complexity 1 23 0 465 274 41 34 chr9 15220890 15221078 -102641549 - MIR SINE MIR -56 152 7 24 53 0 0 chr9 15221112 15221150 -102641477 + AT_rich Low_complexity Low_complexity 1 38 0 1933 113 8 4 chr9 15221388 15221653 -102640974 - AluSx SINE Alu -10 302 37 196 182 0 0 chr9 15222597 15222630 -102639997 - L2 LINE L2 0 3272 3240 1830 88 4 16 chr9 15223047 15223298 -102639329 - AluSp SINE Alu -65 248 1 357 256 47 47 chr9 15223658 15223787 -102638840 + L2 LINE L2 3168 3296 -17 288 0 0 0 chr9 15224329 15224361 -102638266 + (TA)n Simple_repeat Simple_repeat 2 33 0 270 164 0 0 chr9 15224485 15224540 -102638087 + GA-rich Low_complexity Low_complexity 1 55 0 2404 91 0 7 chr9 15226612 15226921 -102635706 - AluSx SINE Alu -3 309 3 2118 111 28 0 chr9 15227567 15227855 -102634772 - AluSg SINE Alu -14 296 1 25 65 0 0 chr9 15227901 15227947 -102634680 + AT_rich Low_complexity Low_complexity 1 46 0 271 330 80 0 chr9 15228523 15228623 -102634004 + MIR3 SINE MIR 56 163 -45 22 0 0 0 chr9 15230041 15230063 -102632564 + AT_rich Low_complexity Low_complexity 1 22 0 251 241 35 69 chr9 15230732 15230848 -102631779 - MIR SINE MIR -60 202 91 584 142 0 8 chr9 15230957 15231084 -102631543 + (TG)n Simple_repeat Simple_repeat 2 127 0 518 305 142 36 chr9 15231093 15231509 -102631118 - L2 LINE L2 -50 3263 2804 294 148 0 0 chr9 15233423 15233477 -102629150 + (TC)n Simple_repeat Simple_repeat 1 54 0 340 337 109 5 chr9 15237816 15238000 -102624627 + MIR SINE MIR 60 262 0 209 318 159 5 chr9 15238279 15238480 -102624147 + L2 LINE L2 2266 2497 -817 213 140 18 70 chr9 15238630 15238687 -102623940 + A-rich Low_complexity Low_complexity 1 54 0 2090 128 0 0 chr9 15238784 15239072 -102623555 + AluSx SINE Alu 1 288 -24 1182 204 22 117 chr9 15239981 15240393 -102622234 + MLT1A2 LTR MaLR 1 373 -1 329 339 116 21 chr9 15240783 15240972 -102621655 + MIR SINE MIR 53 259 -3 1838 135 4 4 chr9 15241114 15241381 -102621246 - AluJo SINE Alu 0 312 46 240 143 0 0 chr9 15241385 15241427 -102621200 + (TTCC)n Simple_repeat Simple_repeat 4 45 0 261 98 0 0 chr9 15241475 15241516 -102621111 + (TCCCC)n Simple_repeat Simple_repeat 3 43 0 1387 178 4 4 chr9 15241539 15241764 -102620863 - AluJo SINE Alu -87 225 1 806 301 120 31 chr9 15241771 15242256 -102620371 + MLT1K LTR MaLR 42 569 -19 346 343 108 5 chr9 15242330 15242534 -102620093 - MIR SINE MIR -1 261 37 203 218 18 0 chr9 15242852 15242907 -102619720 + GA-rich Low_complexity Low_complexity 4 59 0 327 146 0 0 chr9 15246130 15246185 -102616442 + (GGGA)n Simple_repeat Simple_repeat 1 55 0 683 197 0 8 chr9 15246742 15246864 -102615763 + FLAM_A SINE Alu 1 121 -12 24 53 0 0 chr9 15246864 15246902 -102615725 + AT_rich Low_complexity Low_complexity 1 38 0 213 335 195 0 chr9 15247015 15247200 -102615427 + L2 LINE L2 2804 3024 -248 1790 168 4 0 chr9 15247213 15247487 -102615140 + AluSx SINE Alu 1 275 -37 284 0 28 0 chr9 15247491 15247527 -102615100 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 1501 187 4 8 chr9 15248178 15248446 -102614181 + AluJo SINE Alu 46 312 0 410 277 145 24 chr9 15249119 15249285 -102613342 + MIR SINE MIR 7 192 -70 22 0 0 0 chr9 15249514 15249536 -102613091 + AT_rich Low_complexity Low_complexity 1 22 0 203 289 0 22 chr9 15249647 15249737 -102612890 + GA-rich Low_complexity Low_complexity 2 89 0 662 274 99 9 chr9 15250245 15250468 -102612159 + MIR SINE MIR 2 244 -18 2140 126 3 3 chr9 15250667 15250977 -102611650 + AluSx SINE Alu 1 310 -2 2124 101 0 14 chr9 15252812 15253129 -102609498 + AluSx SINE Alu 1 313 0 2168 117 0 0 chr9 15254228 15254519 -102608108 + AluSx SINE Alu 1 291 -21 2311 191 92 20 chr9 15254657 15255258 -102607369 - LTR48B LTR ERV1 0 644 1 241 26 53 0 chr9 15255959 15255997 -102606630 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 202 397 98 16 chr9 15257957 15258151 -102604476 - L3b LINE CR1 -5 1578 1369 1628 174 18 60 chr9 15258444 15258829 -102603798 + MLT1A2 LTR MaLR 1 369 -5 325 324 133 82 chr9 15258905 15259220 -102603407 - L2 LINE L2 -2 3270 2940 225 349 95 27 chr9 15259380 15259502 -102603125 + L2 LINE L2 2227 2339 -975 1548 204 13 25 chr9 15259502 15259816 -102602811 + AluJb SINE Alu 1 310 -2 225 349 95 27 chr9 15259816 15259988 -102602639 + L2 LINE L2 2339 2541 -773 27 0 0 0 chr9 15260442 15260469 -102602158 + AT_rich Low_complexity Low_complexity 1 27 0 564 266 23 75 chr9 15260708 15261013 -102601614 + L2 LINE L2 3025 3313 0 1985 101 52 11 chr9 15261044 15261330 -102601297 + AluSx SINE Alu 1 298 -14 252 0 0 0 chr9 15263773 15263801 -102598826 + (A)n Simple_repeat Simple_repeat 1 28 0 288 263 0 13 chr9 15264357 15264433 -102598194 + C-rich Low_complexity Low_complexity 3 77 0 243 0 0 0 chr9 15265886 15265913 -102596714 + (A)n Simple_repeat Simple_repeat 1 27 0 194 295 27 89 chr9 15266960 15267072 -102595555 - L2 LINE L2 -2855 459 355 360 0 0 0 chr9 15267445 15267485 -102595142 + (CA)n Simple_repeat Simple_repeat 2 41 0 377 313 43 18 chr9 15269740 15269903 -102592724 + MIR SINE MIR 40 206 -56 315 104 0 0 chr9 15270517 15270565 -102592062 + (CA)n Simple_repeat Simple_repeat 1 48 0 614 265 60 0 chr9 15273395 15273546 -102589081 + MIR SINE MIR 40 199 -63 289 293 87 33 chr9 15275836 15275986 -102586641 - MIR SINE MIR -70 192 35 566 273 70 31 chr9 15275990 15276217 -102586410 + MIR SINE MIR 24 259 -3 313 309 75 11 chr9 15277225 15277403 -102585224 + MIR SINE MIR 8 193 -69 2244 106 3 0 chr9 15278324 15278617 -102584010 - AluSx SINE Alu -18 294 1 509 245 221 14 chr9 15278746 15278954 -102583673 + MIR SINE MIR 7 257 -5 335 330 13 3 chr9 15279056 15279184 -102583443 - MIR SINE MIR -62 146 34 437 280 127 0 chr9 15279865 15279983 -102582644 + L2 LINE L2 3138 3270 -2 2456 35 14 0 chr9 15280345 15280634 -102581993 + AluY SINE Alu 1 293 -18 2035 82 14 11 chr9 15280634 15280915 -102581712 - AluSg SINE Alu -28 282 1 315 71 0 0 chr9 15282277 15282319 -102580308 + (TG)n Simple_repeat Simple_repeat 2 43 0 198 103 0 0 chr9 15282319 15282348 -102580279 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 22 80 0 0 chr9 15282359 15282409 -102580218 + AT_rich Low_complexity Low_complexity 1 50 0 310 227 0 0 chr9 15282417 15282483 -102580144 - L1MC4 LINE L1 -1337 6705 6640 341 222 19 0 chr9 15282733 15282841 -102579786 + (CATATA)n Simple_repeat Simple_repeat 1 110 0 382 362 81 0 chr9 15283592 15283802 -102578825 - MIR SINE MIR -16 246 20 1998 120 14 4 chr9 15284397 15284673 -102577954 + AluSx SINE Alu 1 279 -33 21 57 0 0 chr9 15284751 15284786 -102577841 + AT_rich Low_complexity Low_complexity 1 35 0 237 288 163 0 chr9 15285416 15285496 -102577131 + MIR3 SINE MIR 102 194 -14 295 324 38 19 chr9 15285740 15285845 -102576782 - MIR3 SINE MIR -11 197 91 2136 69 0 21 chr9 15288539 15288860 -102573767 + AluY SINE Alu 1 315 0 615 237 26 0 chr9 15289449 15289601 -102573026 - MIR SINE MIR -57 205 50 1584 195 29 11 chr9 15289640 15289989 -102572638 + MLT1A1 LTR MaLR 11 365 0 22 0 0 0 chr9 15291082 15291104 -102571523 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr9 15291174 15291219 -102571408 + AT_rich Low_complexity Low_complexity 1 45 0 210 171 0 0 chr9 15294760 15294801 -102567826 + CT-rich Low_complexity Low_complexity 4 44 0 218 152 0 43 chr9 15295918 15295964 -102566663 + C-rich Low_complexity Low_complexity 2 45 0 24 32 0 0 chr9 15299224 15299255 -102563372 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 15299530 15299551 -102563076 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 15303144 15303166 -102559461 + AT_rich Low_complexity Low_complexity 1 22 0 263 226 0 0 chr9 15307138 15307200 -102555427 + (CGGG)n Simple_repeat Simple_repeat 3 64 0 246 128 0 0 chr9 15308777 15308816 -102553811 + (TCCC)n Simple_repeat Simple_repeat 2 40 0 225 0 0 0 chr9 15310298 15310323 -102552304 + (T)n Simple_repeat Simple_repeat 1 25 0 234 0 0 0 chr9 15313869 15313895 -102548732 + (A)n Simple_repeat Simple_repeat 1 26 0 258 176 0 0 chr9 15314089 15314140 -102548487 + (TG)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr9 15314463 15314484 -102548143 + GC_rich Low_complexity Low_complexity 1 21 0 35 54 0 0 chr9 15316947 15317003 -102545624 + AT_rich Low_complexity Low_complexity 1 56 0 23 33 0 0 chr9 15317617 15317647 -102544980 + AT_rich Low_complexity Low_complexity 1 30 0 192 40 0 0 chr9 15319607 15319632 -102542995 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1708 154 7 21 chr9 15319946 15320232 -102542395 - AluJb SINE Alu -18 294 13 22 0 0 0 chr9 15320255 15320277 -102542350 + AT_rich Low_complexity Low_complexity 1 22 0 483 254 101 26 chr9 15320674 15320863 -102541764 + Charlie8 DNA MER1_type 74 276 -2141 344 283 58 22 chr9 15320937 15321075 -102541552 - MIR3 SINE MIR -48 160 18 2361 109 0 0 chr9 15321302 15321606 -102541021 - AluSg SINE Alu -4 306 3 2322 89 0 13 chr9 15321763 15322078 -102540549 + AluY SINE Alu 1 311 0 775 253 25 5 chr9 15323313 15323515 -102539112 - MARNA DNA Mariner -146 440 235 380 327 70 19 chr9 15323583 15323797 -102538830 + MIR SINE MIR 28 252 -10 2354 87 7 0 chr9 15323972 15324272 -102538355 + AluSx SINE Alu 1 302 -10 211 292 15 0 chr9 15324437 15324502 -102538125 - L2 LINE L2 -13 3300 3235 624 296 11 5 chr9 15325114 15325300 -102537327 - MIR SINE MIR -61 201 15 2346 270 67 18 chr9 15325658 15326577 -102536050 - L1ME3A LINE L1 -20 6150 5181 666 237 0 24 chr9 15326583 15326601 -102536026 - L1MA10 LINE L1 0 6334 6317 3939 201 36 26 chr9 15326601 15328079 -102534548 - L1ME1 LINE L1 -5 6161 4670 524 210 20 0 chr9 15328559 15328659 -102533968 + MER45 DNA AcHobo 1 102 -1479 243 0 0 0 chr9 15328662 15328689 -102533938 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1430 204 14 17 chr9 15328774 15329068 -102533559 - MER58B DNA MER1_type -43 298 6 430 286 4 0 chr9 15329071 15329298 -102533329 + L1ME3A LINE L1 5647 5944 -226 2644 58 0 0 chr9 15330034 15330345 -102532282 + AluY SINE Alu 1 311 0 225 353 60 24 chr9 15330365 15330532 -102532095 + MIR SINE MIR 20 192 -70 291 259 23 6 chr9 15330630 15330811 -102531816 + CT-rich Low_complexity Low_complexity 1 184 0 291 206 16 0 chr9 15331125 15331188 -102531439 + MIR SINE MIR 199 262 0 254 348 14 7 chr9 15331473 15331611 -102531016 - L3 LINE CR1 -847 730 592 495 265 20 14 chr9 15331912 15332059 -102530568 - MIR3 SINE MIR -40 168 21 715 229 6 34 chr9 15332274 15332449 -102530178 - MER5B DNA MER1_type -5 173 4 206 170 170 0 chr9 15333188 15333241 -102529386 + MER91A DNA MER1_type 18 79 -117 469 132 8 41 chr9 15334345 15334466 -102528161 + (GGAA)n Simple_repeat Simple_repeat 2 118 0 201 283 0 0 chr9 15334682 15334728 -102527899 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 381 43 0 0 chr9 15336007 15336054 -102526573 + (GA)n Simple_repeat Simple_repeat 2 48 0 208 269 0 0 chr9 15336106 15336184 -102526443 + (CAGA)n Simple_repeat Simple_repeat 2 79 0 30 0 0 0 chr9 15338025 15338055 -102524572 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 15339064 15339092 -102523535 + AT_rich Low_complexity Low_complexity 1 28 0 229 120 0 80 chr9 15339283 15339333 -102523294 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 197 78 0 47 chr9 15343728 15343764 -102518863 - MIR SINE MIR -63 145 112 22 0 0 0 chr9 15344042 15344064 -102518563 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr9 15345762 15345788 -102516839 + (T)n Simple_repeat Simple_repeat 1 26 0 220 340 9 19 chr9 15345891 15345997 -102516630 + MIR3 SINE MIR 87 191 -17 351 0 0 0 chr9 15346696 15346735 -102515892 + (TG)n Simple_repeat Simple_repeat 2 40 0 1971 147 110 8 chr9 15347037 15347391 -102515236 + MLT1B LTR MaLR 1 390 0 608 222 28 44 chr9 15347500 15347592 -102515035 + MER45A DNA AcHobo 1 90 -1491 2442 80 0 3 chr9 15347592 15347904 -102514723 + AluY SINE Alu 1 311 0 608 222 28 44 chr9 15347904 15347991 -102514636 + MER45A DNA AcHobo 90 177 -1 2370 212 8 12 chr9 15349566 15350071 -102512556 + L1MB8 LINE L1 5652 6154 -24 218 214 41 10 chr9 15350095 15350193 -102512434 + (TA)n Simple_repeat Simple_repeat 1 101 0 482 287 84 24 chr9 15350498 15350664 -102511963 + MLT1K LTR MaLR 12 187 -401 1795 232 27 10 chr9 15350664 15351074 -102511553 - MER63B DNA MER1_type 0 436 20 1428 259 75 25 chr9 15351081 15351560 -102511067 + MLT1D LTR MaLR 1 503 -2 324 206 175 21 chr9 15351589 15351686 -102510941 + MLT1K LTR MaLR 199 310 -278 22 80 0 0 chr9 15351847 15351897 -102510730 + AT_rich Low_complexity Low_complexity 1 50 0 2471 56 0 37 chr9 15352447 15352769 -102509858 - AluY SINE Alu -1 310 1 29 0 0 0 chr9 15352900 15352929 -102509698 + AT_rich Low_complexity Low_complexity 1 29 0 1523 201 7 7 chr9 15354527 15354835 -102507792 + AluJo SINE Alu 1 308 -4 568 236 69 0 chr9 15354871 15355015 -102507612 + MER69A DNA AcHobo 19 172 -5 216 171 49 0 chr9 15355494 15355535 -102507092 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 237 184 0 0 chr9 15355535 15355584 -102507043 + LTR66 LTR ERVL 395 443 -167 960 266 91 36 chr9 15355605 15356132 -102506495 - L1ME4a LINE L1 -74 6047 5492 476 234 35 35 chr9 15356929 15357070 -102505557 + MIR SINE MIR 119 259 -3 2236 112 3 3 chr9 15358392 15358695 -102503932 - AluSg SINE Alu -5 305 3 494 334 40 35 chr9 15359012 15359383 -102503244 - L2 LINE L2 0 3272 2900 3514 30 0 0 chr9 15359522 15359927 -102502700 + L1PA7 LINE L1 5722 6126 -28 431 120 40 80 chr9 15359980 15360080 -102502547 + L1PA8 LINE L1 6077 6172 0 358 206 199 15 chr9 15360774 15360905 -102501722 + MIR SINE MIR 85 239 -23 227 303 145 0 chr9 15360986 15361062 -102501565 + L2 LINE L2 3195 3281 -32 225 160 0 60 chr9 15361065 15361115 -102501512 - MIR SINE MIR -148 114 68 358 345 71 58 chr9 15361429 15361881 -102500746 + L2 LINE L2 2325 2782 -532 244 370 94 0 chr9 15361928 15362120 -102500507 + L2 LINE L2 2841 3050 -222 2255 111 0 0 chr9 15362726 15363015 -102499612 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr9 15363028 15363055 -102499572 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 290 229 18 110 chr9 15363340 15363449 -102499178 + MIR SINE MIR 25 106 -102 525 217 172 59 chr9 15363456 15363677 -102498950 + Charlie8 DNA MER1_type 2 247 -2170 235 231 123 15 chr9 15364117 15364182 -102498445 + Charlie8 DNA MER1_type 2337 2408 -9 246 136 0 0 chr9 15365538 15365582 -102497045 + (TG)n Simple_repeat Simple_repeat 1 44 0 218 254 0 0 chr9 15366093 15366148 -102496479 + CT-rich Low_complexity Low_complexity 1 55 0 1989 141 0 0 chr9 15366531 15366841 -102495786 + AluSx SINE Alu 1 310 0 636 271 104 88 chr9 15366968 15367279 -102495348 - MLT1J LTR MaLR -4 507 184 2207 103 7 10 chr9 15367279 15367581 -102495046 + AluSq SINE Alu 1 301 -12 636 271 104 88 chr9 15367581 15367768 -102494859 - MLT1J LTR MaLR -327 184 1 962 168 19 0 chr9 15367970 15368125 -102494502 - FAM SINE Alu -16 159 2 2137 130 0 3 chr9 15368422 15368721 -102493906 - AluSx SINE Alu -14 298 1 1385 206 25 11 chr9 15369143 15369420 -102493207 - AluJo SINE Alu -31 281 1 235 338 102 0 chr9 15370010 15370167 -102492460 + MIR SINE MIR 74 246 -16 2400 101 0 0 chr9 15370250 15370558 -102492069 - AluSc SINE Alu -1 308 1 207 0 0 0 chr9 15371577 15371600 -102491027 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2357 85 0 0 chr9 15371603 15371886 -102490741 - AluSq SINE Alu -30 283 1 289 319 163 0 chr9 15372625 15372766 -102489861 - MIR SINE MIR -52 210 47 862 39 0 0 chr9 15372900 15373003 -102489624 + AluSg/x SINE Alu 206 308 -4 2033 153 3 0 chr9 15373090 15373391 -102489236 - AluJb SINE Alu -4 308 7 298 172 376 11 chr9 15373684 15373777 -102488850 + L2 LINE L2 3187 3313 0 221 184 0 0 chr9 15373980 15374018 -102488609 + L2 LINE L2 3179 3216 -97 264 59 0 0 chr9 15374252 15374286 -102488341 + (GA)n Simple_repeat Simple_repeat 1 34 0 505 252 147 43 chr9 15374458 15374716 -102487911 + L1ME3A LINE L1 5554 5838 -332 657 273 20 10 chr9 15377009 15377207 -102485420 - MIR SINE MIR -21 241 42 368 226 25 57 chr9 15377456 15377615 -102485012 - L1ME4a LINE L1 -42 6079 5926 2034 155 0 0 chr9 15377691 15377987 -102484640 - AluSx SINE Alu -14 298 3 325 271 41 33 chr9 15378779 15378901 -102483726 + MER103 DNA DNA 2 124 -42 490 241 92 24 chr9 15379286 15379587 -102483040 + L1ME LINE L1 5152 5473 -755 246 298 29 29 chr9 15379604 15379708 -102482919 + L1ME LINE L1 5540 5643 -519 237 286 13 97 chr9 15379905 15380059 -102482568 + L1ME LINE L1 5647 5787 -383 679 189 0 24 chr9 15380117 15380244 -102482383 + AluJb SINE Alu 121 244 -68 581 239 6 0 chr9 15380260 15380419 -102482208 + GA-rich Low_complexity Low_complexity 2 161 0 584 303 17 11 chr9 15380784 15380959 -102481668 + MER5B DNA MER1_type 1 176 -2 389 221 78 61 chr9 15382101 15382216 -102480411 + MIR SINE MIR 45 160 -62 883 233 24 75 chr9 15382237 15382444 -102480183 + L1MC3 LINE L1 6772 6957 -828 2407 168 3 3 chr9 15382444 15382808 -102479819 + MLT1A1 LTR MaLR 1 364 -1 883 233 24 75 chr9 15382808 15382931 -102479696 + L1MC3 LINE L1 6957 7085 -700 345 306 0 10 chr9 15382939 15383037 -102479590 + MLT1F1 LTR MaLR 35 131 -436 705 157 60 15 chr9 15383045 15383179 -102479448 + L1MC3 LINE L1 7203 7342 -443 3636 152 20 34 chr9 15383179 15383823 -102478804 + MER50 LTR ERV1 1 635 -99 440 236 67 61 chr9 15384322 15384487 -102478140 - L1ME LINE L1 -426 5695 5530 29 60 0 0 chr9 15384729 15384779 -102477848 + AT_rich Low_complexity Low_complexity 1 50 0 495 332 100 17 chr9 15384782 15385023 -102477604 - MIR SINE MIR 0 262 2 432 264 194 38 chr9 15385058 15385456 -102477171 - L1ME LINE L1 -1310 4836 4377 328 298 0 11 chr9 15386043 15386137 -102476490 + CT-rich Low_complexity Low_complexity 4 96 0 218 176 0 20 chr9 15386673 15386691 -102475936 + A-rich Low_complexity Low_complexity 2 19 -32 2409 107 0 0 chr9 15386691 15387000 -102475627 + AluSg SINE Alu 1 309 -1 218 176 0 20 chr9 15387000 15387032 -102475595 + A-rich Low_complexity Low_complexity 19 51 0 666 263 58 5 chr9 15387098 15387288 -102475339 + MIR SINE MIR 48 247 -15 333 118 0 0 chr9 15387643 15387694 -102474933 + (CA)n Simple_repeat Simple_repeat 2 52 0 434 264 50 57 chr9 15388134 15388274 -102474353 + MER5B DNA MER1_type 40 178 0 260 357 79 7 chr9 15388654 15388794 -102473833 - MIR SINE MIR -21 241 92 269 216 162 42 chr9 15388845 15389012 -102473615 + MER5A DNA MER1_type 3 189 0 368 265 29 10 chr9 15389078 15389180 -102473447 - MER5A DNA MER1_type -77 112 9 22 0 0 0 chr9 15389593 15389615 -102473012 + AT_rich Low_complexity Low_complexity 1 22 0 236 312 11 32 chr9 15391136 15391229 -102471398 + L2 LINE L2 2893 2983 -289 214 259 35 0 chr9 15391328 15391386 -102471241 + L2 LINE L2 3178 3237 -76 826 295 34 4 chr9 15393006 15393240 -102469387 - MIR SINE MIR -19 243 3 623 250 33 11 chr9 15394019 15394199 -102468428 - MER112 DNA MER1_type -5 255 72 582 273 32 43 chr9 15394750 15394937 -102467690 + MIR SINE MIR 47 231 -31 212 300 170 10 chr9 15397440 15397540 -102465087 - L2 LINE L2 -8 3305 3190 191 219 0 0 chr9 15398265 15398306 -102464321 - MIR SINE MIR -62 200 160 259 373 39 0 chr9 15398731 15398884 -102463743 + MIR SINE MIR 70 228 -34 228 273 15 15 chr9 15400958 15401024 -102461603 + L2 LINE L2 3243 3308 -5 237 65 0 0 chr9 15403745 15403776 -102458851 + (GA)n Simple_repeat Simple_repeat 1 31 0 195 204 0 0 chr9 15404240 15404284 -102458343 + A-rich Low_complexity Low_complexity 1 44 0 216 196 22 0 chr9 15405748 15405794 -102456833 + GA-rich Low_complexity Low_complexity 3 49 0 183 80 0 0 chr9 15407026 15407051 -102455576 + (T)n Simple_repeat Simple_repeat 1 25 0 284 333 56 0 chr9 15407269 15407359 -102455268 - L2 LINE L2 -22 3250 3156 299 233 27 14 chr9 15408772 15408845 -102453782 + MIR SINE MIR 46 119 -143 210 309 10 10 chr9 15408933 15409030 -102453597 + GA-rich Low_complexity Low_complexity 2 98 0 588 265 65 25 chr9 15409342 15409530 -102453097 + MIR SINE MIR 1 199 -63 612 244 0 0 chr9 15409530 15409665 -102452962 + L1MA10 LINE L1 6198 6332 -2 588 265 65 25 chr9 15409665 15409676 -102452951 + MIR SINE MIR 199 208 -54 322 175 31 82 chr9 15411639 15411736 -102450891 + L1MD2 LINE L1 6268 6359 0 424 267 121 9 chr9 15412531 15412647 -102449980 - L2 LINE L2 -1 3271 3143 1778 50 0 0 chr9 15412780 15412981 -102449646 + AluY SINE Alu 1 201 -110 3661 247 38 22 chr9 15412981 15414197 -102448430 - L1M4 LINE L1 -1894 4252 3018 266 326 52 22 chr9 15414249 15414384 -102448243 - L3 LINE CR1 -239 1338 1200 235 171 0 49 chr9 15414656 15414697 -102447930 + Charlie5 DNA MER1_type 2 40 -2572 198 146 24 49 chr9 15414697 15414738 -102447889 + MIR SINE MIR 36 75 -133 287 325 40 40 chr9 15415492 15415618 -102447009 + MIR3 SINE MIR 13 138 -70 203 306 0 28 chr9 15416275 15416347 -102446280 + CT-rich Low_complexity Low_complexity 1 70 0 369 288 190 19 chr9 15416689 15416894 -102445733 - MIR SINE MIR 0 262 23 248 224 75 0 chr9 15417092 15417159 -102445468 + L2 LINE L2 3242 3313 0 907 81 52 0 chr9 15418950 15419086 -102443541 + L1MA5A LINE L1 6154 6296 -1 24 0 0 0 chr9 15419213 15419237 -102443390 + AT_rich Low_complexity Low_complexity 1 24 0 281 262 203 11 chr9 15419245 15419432 -102443195 - L1ME4a LINE L1 -106 6015 5793 2416 165 70 5 chr9 15419432 15419832 -102442795 - MSTB LTR MaLR 0 426 1 8826 166 67 19 chr9 15419832 15421407 -102441220 - MSTB-int LTR MaLR 0 1651 1 2230 151 18 87 chr9 15421409 15421860 -102440767 - MSTB LTR MaLR -6 420 1 434 300 88 9 chr9 15422053 15422280 -102440347 - MLT1H LTR MaLR -244 305 61 319 286 149 30 chr9 15422333 15422501 -102440126 - L1ME4a LINE L1 -410 5711 5524 201 39 0 0 chr9 15422559 15422585 -102440042 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 596 279 81 63 chr9 15422853 15423420 -102439207 - L1MC4a LINE L1 -1978 5830 5254 1056 296 98 42 chr9 15423428 15424206 -102438421 - L1MC4a LINE L1 -941 5205 4385 1485 126 79 7 chr9 15424480 15424757 -102437870 - L1MB3 LINE L1 -3 6180 5884 22 0 0 0 chr9 15424874 15424896 -102437731 + AT_rich Low_complexity Low_complexity 1 22 0 204 125 0 0 chr9 15425304 15425336 -102437291 + (A)n Simple_repeat Simple_repeat 1 32 0 221 234 31 31 chr9 15426114 15426178 -102436449 + L2 LINE L2 3204 3267 -5 331 286 246 14 chr9 15426188 15426408 -102436219 + L3 LINE CR1 389 659 -918 282 349 9 0 chr9 15426967 15427073 -102435554 - L2 LINE L2 -4 3268 3162 187 280 40 13 chr9 15427078 15427153 -102435474 + L3 LINE CR1 676 752 -825 1585 158 76 10 chr9 15427161 15427452 -102435175 - AluJb SINE Alu -2 310 1 202 216 0 0 chr9 15427879 15427916 -102434711 + L2 LINE L2 3259 3295 -18 330 286 77 62 chr9 15428825 15429198 -102433429 - L2 LINE L2 -1 3271 2821 413 275 131 6 chr9 15429259 15429419 -102433208 + MIR SINE MIR 4 183 -79 203 156 0 0 chr9 15429519 15429551 -102433076 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1705 181 0 13 chr9 15429579 15429893 -102432734 - AluJb SINE Alu 0 312 3 983 249 93 71 chr9 15430207 15430786 -102431841 + HAL1 LINE L1 1915 2506 -1 215 331 152 43 chr9 15430939 15431842 -102430785 - L2 LINE L2 -575 2739 1739 22 0 0 0 chr9 15432357 15432379 -102430248 + AT_rich Low_complexity Low_complexity 1 22 0 491 0 0 17 chr9 15432421 15432481 -102430146 + (TAGA)n Simple_repeat Simple_repeat 2 60 0 224 296 57 38 chr9 15432603 15432762 -102429865 - L2 LINE L2 -1635 1679 1518 2595 88 36 6 chr9 15432770 15433134 -102429493 + THE1C LTR MaLR 1 375 0 268 229 29 14 chr9 15433484 15433554 -102429073 - MER58 DNA MER1_type -5 2415 2345 1975 140 20 11 chr9 15433563 15433919 -102428708 + L1MB2 LINE L1 5810 6168 -3 1384 124 76 0 chr9 15434176 15434386 -102428241 + MER30 DNA MER1_type 5 230 0 1029 209 73 10 chr9 15435707 15436009 -102426618 + MER33 DNA MER1_type 3 323 -1 243 0 0 0 chr9 15437960 15437987 -102424640 + (CA)n Simple_repeat Simple_repeat 1 27 0 366 243 68 81 chr9 15438780 15438928 -102423699 - MIR3 SINE MIR -11 197 52 1039 224 175 38 chr9 15439001 15439470 -102423157 - MLT1H LTR MaLR -3 546 14 181 294 56 95 chr9 15439494 15439620 -102423007 + L2 LINE L2 2854 2974 -339 1137 286 83 36 chr9 15439714 15440319 -102422308 + HAL1 LINE L1 50 686 -1821 2204 120 3 0 chr9 15440319 15440627 -102422000 + AluSx SINE Alu 2 310 -2 234 136 0 0 chr9 15440638 15440682 -102421945 + (GAAAA)n Simple_repeat Simple_repeat 5 48 0 369 277 86 121 chr9 15440682 15440938 -102421689 + HAL1 LINE L1 667 913 -1594 226 306 82 36 chr9 15440953 15441149 -102421478 + HAL1 LINE L1 2230 2434 -73 237 213 21 0 chr9 15441720 15441767 -102420860 + GA-rich Low_complexity Low_complexity 3 50 0 2268 108 0 0 chr9 15442039 15442336 -102420291 - AluSq SINE Alu -16 297 1 9810 93 5 5 chr9 15442634 15444116 -102418511 - L1PA7 LINE L1 -2113 4033 2551 9855 79 3 0 chr9 15444116 15446227 -102416400 + L1PA7 LINE L1 4041 6154 0 219 283 67 0 chr9 15446468 15446528 -102416099 + L2 LINE L2 3208 3271 -1 194 226 172 43 chr9 15446823 15446916 -102415711 + MIR SINE MIR 151 255 -7 1846 167 0 0 chr9 15447216 15447498 -102415129 - AluJb SINE Alu -30 282 1 273 219 89 32 chr9 15447868 15447991 -102414636 + L1ME4a LINE L1 5946 6075 -46 525 16 0 0 chr9 15448309 15448371 -102414256 + (TC)n Simple_repeat Simple_repeat 2 63 0 324 70 0 0 chr9 15448370 15448413 -102414214 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 2525 58 3 3 chr9 15449006 15449315 -102413312 - AluY SINE Alu -2 309 1 189 419 65 0 chr9 15449735 15449859 -102412768 + L2 LINE L2 2069 2200 -1114 302 329 80 58 chr9 15450282 15450419 -102412208 + L1M2 LINE L1 1045 1184 -5665 13792 202 40 24 chr9 15450419 15451134 -102411493 + L1MA4 LINE L1 818 1520 -5482 369 0 0 0 chr9 15451134 15451175 -102411452 + (TA)n Simple_repeat Simple_repeat 1 41 0 13792 202 40 24 chr9 15451175 15452999 -102409628 + L1MA4 LINE L1 1520 3313 -3689 216 0 0 0 chr9 15452999 15453023 -102409604 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2137 102 0 0 chr9 15453027 15453302 -102409325 - AluSx SINE Alu -37 275 1 13792 202 40 24 chr9 15453302 15454617 -102408010 + L1MA4 LINE L1 3315 4607 -2395 2335 93 0 3 chr9 15454617 15454919 -102407708 - AluSg SINE Alu -9 301 1 13792 202 40 24 chr9 15454919 15457047 -102405580 + L1MA4 LINE L1 4607 6991 -11 207 269 0 30 chr9 15457081 15457148 -102405479 + L2 LINE L2 2715 2779 -535 223 284 112 26 chr9 15457275 15457391 -102405236 + L2 LINE L2 2935 3060 -212 231 268 146 0 chr9 15457482 15457564 -102405063 + MIR SINE MIR 40 133 -75 419 292 211 10 chr9 15457587 15457796 -102404831 + MIR SINE MIR 3 253 -9 225 338 147 15 chr9 15458135 15458271 -102404356 + MIR SINE MIR 106 259 -3 189 333 144 0 chr9 15458248 15458338 -102404289 + L2 LINE L2 3202 3304 -9 * 26 0 0 0 chr9 15458458 15458484 -102404143 + AT_rich Low_complexity Low_complexity 1 26 0 840 232 121 0 chr9 15458724 15458948 -102403679 - MIR SINE MIR 0 262 12 488 288 204 0 chr9 15460365 15460556 -102402071 + MIR SINE MIR 31 260 -2 2593 53 0 0 chr9 15461542 15461844 -102400783 + AluSq SINE Alu 1 302 -11 213 121 0 0 chr9 15462052 15462085 -102400542 + (ATG)n Simple_repeat Simple_repeat 2 34 0 2924 281 116 22 chr9 15462615 15464544 -102398083 + L1MEc LINE L1 88 2198 -4198 1095 189 116 61 chr9 15464544 15464872 -102397755 + MLT1A1 LTR MaLR 3 348 -17 260 207 24 12 chr9 15464876 15464958 -102397669 + L1MEc LINE L1 2191 2273 -4123 342 282 48 27 chr9 15464969 15465157 -102397470 + Charlie1 DNA MER1_type 1465 1656 -1105 812 275 49 5 chr9 15465161 15465684 -102396943 - L1MEc LINE L1 -3764 2471 1948 23 33 0 0 chr9 15465692 15465722 -102396905 + AT_rich Low_complexity Low_complexity 1 30 0 2720 243 43 17 chr9 15465802 15466817 -102395810 + L1MEc LINE L1 2493 3534 -2681 2560 213 79 15 chr9 15467558 15468964 -102393663 + L1MB7 LINE L1 4630 6152 -32 1850 174 74 71 chr9 15468962 15469586 -102393041 + L1ME LINE L1 5204 5819 -347 * 399 41 0 0 chr9 15470971 15471020 -102391607 + (GA)n Simple_repeat Simple_repeat 2 50 0 208 269 0 0 chr9 15471072 15471150 -102391477 + (CAGA)n Simple_repeat Simple_repeat 2 79 0 30 0 0 0 chr9 15472995 15473025 -102389602 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr9 15474034 15474062 -102388565 + AT_rich Low_complexity Low_complexity 1 28 0 229 120 0 80 chr9 15474253 15474303 -102388324 + (AGGGGG)n Simple_repeat Simple_repeat 3 48 0 197 78 0 47 chr9 15478697 15478733 -102383894 - MIR SINE MIR -63 145 112 22 0 0 0 chr9 15479011 15479033 -102383594 + AT_rich Low_complexity Low_complexity 1 22 0 180 77 0 0 chr9 15480731 15480757 -102381870 + (T)n Simple_repeat Simple_repeat 1 26 0 220 340 9 19 chr9 15480860 15480966 -102381661 + MIR3 SINE MIR 87 191 -17 333 0 0 0 chr9 15481665 15481702 -102380925 + (TG)n Simple_repeat Simple_repeat 2 38 0 1971 147 110 8 chr9 15482004 15482358 -102380269 + MLT1B LTR MaLR 1 390 0 608 222 28 44 chr9 15482467 15482559 -102380068 + MER45A DNA AcHobo 1 90 -1491 2442 80 0 3 chr9 15482559 15482871 -102379756 + AluY SINE Alu 1 311 0 608 222 28 44 chr9 15482871 15482958 -102379669 + MER45A DNA AcHobo 90 177 -1 2370 212 8 12 chr9 15484533 15485038 -102377589 + L1MB8 LINE L1 5652 6154 -24 229 216 39 10 chr9 15485062 15485164 -102377463 + (TA)n Simple_repeat Simple_repeat 1 105 0 482 287 84 24 chr9 15485469 15485635 -102376992 + MLT1K LTR MaLR 12 187 -401 1795 232 27 10 chr9 15485635 15486045 -102376582 - MER63B DNA MER1_type 0 436 20 1428 259 75 25 chr9 15486052 15486531 -102376096 + MLT1D LTR MaLR 1 503 -2 324 206 175 21 chr9 15486560 15486657 -102375970 + MLT1K LTR MaLR 199 310 -278 22 80 0 0 chr9 15486818 15486868 -102375759 + AT_rich Low_complexity Low_complexity 1 50 0 2471 56 0 37 chr9 15487418 15487740 -102374887 - AluY SINE Alu -1 310 1 29 0 0 0 chr9 15487871 15487900 -102374727 + AT_rich Low_complexity Low_complexity 1 29 0 1523 201 7 7 chr9 15489498 15489806 -102372821 + AluJo SINE Alu 1 308 -4 568 236 69 0 chr9 15489842 15489986 -102372641 + MER69A DNA AcHobo 19 172 -5 216 171 49 0 chr9 15490465 15490506 -102372121 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 237 184 0 0 chr9 15490506 15490555 -102372072 + LTR66 LTR ERVL 395 443 -167 960 266 91 36 chr9 15490576 15491103 -102371524 - L1ME4a LINE L1 -74 6047 5492 476 234 35 35 chr9 15491900 15492041 -102370586 + MIR SINE MIR 119 259 -3 2223 116 3 3 chr9 15493363 15493666 -102368961 - AluSg SINE Alu -5 305 3 494 334 40 35 chr9 15493983 15494354 -102368273 - L2 LINE L2 0 3272 2900 3514 30 0 0 chr9 15494493 15494898 -102367729 + L1PA7 LINE L1 5722 6126 -28 431 120 40 80 chr9 15494951 15495051 -102367576 + L1PA8 LINE L1 6077 6172 0 358 206 199 15 chr9 15495745 15495876 -102366751 + MIR SINE MIR 85 239 -23 227 303 145 0 chr9 15495957 15496033 -102366594 + L2 LINE L2 3195 3281 -32 225 160 0 60 chr9 15496036 15496086 -102366541 - MIR SINE MIR -148 114 68 358 345 71 58 chr9 15496400 15496852 -102365775 + L2 LINE L2 2325 2782 -532 244 370 94 0 chr9 15496899 15497091 -102365536 + L2 LINE L2 2841 3050 -222 2255 111 0 0 chr9 15497697 15497986 -102364641 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr9 15497999 15498026 -102364601 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 290 229 18 110 chr9 15498311 15498420 -102364207 + MIR SINE MIR 25 106 -102 525 217 172 59 chr9 15498427 15498648 -102363979 + Charlie8 DNA MER1_type 2 247 -2170 235 231 123 15 chr9 15499088 15499153 -102363474 + Charlie8 DNA MER1_type 2337 2408 -9 336 111 0 0 chr9 15500509 15500563 -102362064 + (TG)n Simple_repeat Simple_repeat 1 54 0 218 254 0 0 chr9 15501074 15501129 -102361498 + CT-rich Low_complexity Low_complexity 1 55 0 1989 141 0 0 chr9 15501512 15501822 -102360805 + AluSx SINE Alu 1 310 0 636 271 104 88 chr9 15501949 15502260 -102360367 - MLT1J LTR MaLR -4 507 184 2207 103 7 10 chr9 15502260 15502562 -102360065 + AluSq SINE Alu 1 301 -12 636 271 104 88 chr9 15502562 15502749 -102359878 - MLT1J LTR MaLR -327 184 1 962 168 19 0 chr9 15502951 15503106 -102359521 - FAM SINE Alu -16 159 2 2137 130 0 3 chr9 15503403 15503702 -102358925 - AluSx SINE Alu -14 298 1 1385 206 25 11 chr9 15504124 15504401 -102358226 - AluJo SINE Alu -31 281 1 235 338 102 0 chr9 15504991 15505148 -102357479 + MIR SINE MIR 74 246 -16 2402 101 0 0 chr9 15505231 15505539 -102357088 - AluSc SINE Alu -1 308 1 207 0 0 0 chr9 15506558 15506581 -102356046 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2382 85 0 0 chr9 15506584 15506867 -102355760 - AluSq SINE Alu -30 283 1 249 309 169 0 chr9 15507606 15507742 -102354885 - MIR SINE MIR -52 210 52 848 40 0 0 chr9 15507881 15507981 -102354646 + AluSg/x SINE Alu 203 302 -7 2022 156 3 0 chr9 15508068 15508369 -102354258 - AluJb SINE Alu -4 308 7 277 176 0 15 chr9 15508662 15508755 -102353872 + L2 LINE L2 3187 3313 0 209 184 0 0 chr9 15508958 15508996 -102353631 + L2 LINE L2 3179 3216 -97 264 59 0 0 chr9 15509230 15509264 -102353363 + (GA)n Simple_repeat Simple_repeat 1 34 0 499 252 147 43 chr9 15509436 15509694 -102352933 + L1ME3A LINE L1 5554 5838 -332 603 273 20 10 chr9 15511987 15512185 -102350442 - MIR SINE MIR -21 241 42 352 226 25 57 chr9 15512434 15512593 -102350034 - L1ME4a LINE L1 -42 6079 5926 2045 155 0 0 chr9 15512669 15512965 -102349662 - AluSx SINE Alu -14 298 3 311 271 41 33 chr9 15513757 15513879 -102348748 + MER103 DNA DNA 2 124 -42 475 241 92 24 chr9 15514264 15514565 -102348062 + L1ME LINE L1 5152 5473 -755 242 298 29 29 chr9 15514582 15514686 -102347941 + L1ME LINE L1 5540 5643 -519 230 286 13 97 chr9 15514882 15515036 -102347591 + L1ME LINE L1 5647 5787 -383 633 189 0 24 chr9 15515094 15515221 -102347406 + AluJb SINE Alu 121 244 -68 652 188 11 22 chr9 15515248 15515429 -102347198 + GA-rich Low_complexity Low_complexity 2 180 0 530 303 17 11 chr9 15515777 15515952 -102346675 + MER5B DNA MER1_type 1 176 -2 363 231 0 0 chr9 15517131 15517209 -102345418 + MIR SINE MIR 83 160 -102 861 233 24 75 chr9 15517230 15517437 -102345190 + L1MC3 LINE L1 6772 6957 -828 2276 168 3 3 chr9 15517437 15517801 -102344826 + MLT1A1 LTR MaLR 1 364 -1 861 233 24 75 chr9 15517801 15517924 -102344703 + L1MC3 LINE L1 6957 7085 -700 342 306 0 10 chr9 15517932 15518030 -102344597 + MLT1F1 LTR MaLR 35 131 -436 699 157 60 15 chr9 15518038 15518172 -102344455 + L1MC3 LINE L1 7203 7342 -443 3959 159 20 44 chr9 15518172 15518915 -102343712 + MER50 LTR ERV1 1 725 -9 2159 174 34 5 chr9 15518915 15519329 -102343298 + L1MC3 LINE L1 7351 7776 -9 1765 172 31 0 chr9 15519330 15519620 -102343007 + AluJb SINE Alu 1 299 -13 253 306 74 0 chr9 15519628 15519736 -102342891 + MIR SINE MIR 147 262 0 212 308 0 0 chr9 15520894 15520946 -102341681 + (TCCA)n Simple_repeat Simple_repeat 2 53 0 366 322 56 21 chr9 15520949 15521092 -102341535 - L2 LINE L2 -9 3263 3116 2443 127 25 0 chr9 15521208 15521563 -102341064 - THE1B LTR MaLR 0 364 1 292 290 84 0 chr9 15521616 15521723 -102340904 + MIR SINE MIR 28 143 -119 252 0 0 0 chr9 15522611 15522639 -102339988 + (T)n Simple_repeat Simple_repeat 1 28 0 204 200 0 0 chr9 15523976 15524011 -102338616 + polypyrimidine Low_complexity Low_complexity 2 36 0 182 333 14 0 chr9 15524850 15524919 -102337708 - MIR SINE MIR 0 262 193 992 191 89 57 chr9 15525853 15526167 -102336460 + MER33 DNA MER1_type 1 324 0 290 367 25 25 chr9 15528326 15528446 -102334181 + L2 LINE L2 3143 3262 -10 30 27 0 0 chr9 15529730 15529767 -102332860 + AT_rich Low_complexity Low_complexity 1 37 0 273 57 0 0 chr9 15530388 15530423 -102332204 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 381 253 11 0 chr9 15531170 15531257 -102331370 - L2 LINE L2 0 3272 3185 284 320 62 65 chr9 15531492 15531817 -102330810 + LTR67 LTR ERVL 83 406 -151 1068 252 95 27 chr9 15531833 15532245 -102330382 + MLT1J1 LTR MaLR 4 443 -3 802 323 35 15 chr9 15533522 15533860 -102328767 + MLT1J1 LTR MaLR 79 423 -23 368 241 23 45 chr9 15533909 15534042 -102328585 + LTR67 LTR ERVL 418 547 -10 1625 210 3 3 chr9 15534570 15534865 -102327762 - AluJo SINE Alu -12 300 6 309 299 9 0 chr9 15535491 15535598 -102327029 - MLT1J LTR MaLR -385 126 19 25 0 0 0 chr9 15535640 15535665 -102326962 + AT_rich Low_complexity Low_complexity 1 25 0 976 237 19 10 chr9 15535675 15535882 -102326745 - MIR SINE MIR -21 241 33 1207 148 14 0 chr9 15536024 15536241 -102326386 + MER63 DNA MER1_type 836 1055 -6 1952 198 88 29 chr9 15538589 15539080 -102323547 + MLT1F LTR MaLR 12 531 -11 311 336 151 0 chr9 15539158 15539277 -102323350 + L2 LINE L2 3136 3272 0 277 363 55 7 chr9 15540307 15540453 -102322174 + MIR SINE MIR 21 173 -89 2329 100 10 0 chr9 15541039 15541340 -102321287 + AluSc SINE Alu 1 304 -5 546 306 60 0 chr9 15541417 15541583 -102321044 + MIR SINE MIR 76 250 -12 2111 209 43 82 chr9 15541808 15542417 -102320210 - MLT1E LTR MaLR -2 591 7 342 366 32 21 chr9 15542817 15543003 -102319624 + L3b LINE CR1 1230 1417 -166 540 178 10 0 chr9 15543024 15543125 -102319502 + Tigger3b DNA MER2_type 1 102 -1129 5412 114 29 8 chr9 15543128 15543769 -102318858 + Tigger3b DNA MER2_type 284 951 -2077 2376 92 3 3 chr9 15543769 15544074 -102318553 - AluSg SINE Alu -5 305 1 5412 114 29 8 chr9 15544074 15544337 -102318290 + Tigger3b DNA MER2_type 951 1207 -24 422 350 0 62 chr9 15544533 15544658 -102317969 + MER5A DNA MER1_type 8 118 -71 2411 65 10 10 chr9 15544658 15544964 -102317663 - AluSq SINE Alu -7 306 1 422 350 0 62 chr9 15544964 15545032 -102317595 + MER5A DNA MER1_type 118 189 0 203 133 0 0 chr9 15546172 15546202 -102316425 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 558 231 136 3 chr9 15546326 15546476 -102316151 + MER45A DNA AcHobo 1 171 -7 210 375 52 0 chr9 15546807 15546903 -102315724 - MIR SINE MIR -56 152 52 2236 118 3 0 chr9 15547048 15547354 -102315273 + AluSx SINE Alu 1 307 -5 201 196 0 0 chr9 15548034 15548080 -102314547 + CT-rich Low_complexity Low_complexity 4 49 0 225 316 0 13 chr9 15549525 15549601 -102313026 - MLT1K LTR MaLR -329 259 185 633 158 123 0 chr9 15551236 15551382 -102311245 - MER103 DNA DNA -1 165 2 216 0 0 0 chr9 15552491 15552515 -102310112 + (T)n Simple_repeat Simple_repeat 1 24 0 300 328 78 9 chr9 15552626 15552742 -102309885 + L2 LINE L2 3149 3272 0 244 366 106 14 chr9 15553274 15553416 -102309211 + L2 LINE L2 3112 3266 -6 216 97 0 0 chr9 15554141 15554172 -102308455 + (TAA)n Simple_repeat Simple_repeat 2 32 0 1018 272 16 8 chr9 15554175 15554429 -102308198 - MIR SINE MIR -4 258 3 2183 140 7 3 chr9 15554821 15555129 -102307498 - AluJb SINE Alu -3 309 1 235 280 107 0 chr9 15556203 15556278 -102306349 - MIR SINE MIR -133 129 47 1905 149 0 0 chr9 15557458 15557765 -102304862 - AluSx SINE Alu 0 307 1 191 241 56 37 chr9 15558537 15558591 -102304036 - MIR SINE MIR -149 113 59 404 270 85 55 chr9 15558986 15559279 -102303348 + MLT1K LTR MaLR 186 487 -101 659 0 0 0 chr9 15560823 15560895 -102301732 - tRNA-His-CAC tRNA tRNA -3 72 1 239 304 0 0 chr9 15562152 15562221 -102300406 + MER113 DNA MER1_type? 4 72 -449 1032 230 39 9 chr9 15562257 15562487 -102300140 + MIR SINE MIR 21 257 -5 554 268 100 21 chr9 15562495 15562835 -102299792 + MER113 DNA MER1_type? 114 480 -41 609 303 120 12 chr9 15562877 15563201 -102299426 - MLT1I LTR MaLR -48 361 3 261 371 33 26 chr9 15563641 15563792 -102298835 - L2 LINE L2 0 3272 3121 585 265 15 46 chr9 15563876 15564072 -102298555 + MIR3 SINE MIR 6 195 -13 342 313 54 14 chr9 15564271 15564418 -102298209 + L3b LINE CR1 1328 1480 -103 321 169 0 0 chr9 15564895 15564954 -102297673 + (TG)n Simple_repeat Simple_repeat 1 59 0 1703 165 4 0 chr9 15565972 15566245 -102296382 + AluJb SINE Alu 1 274 -38 811 213 59 0 chr9 15566267 15566436 -102296191 + MIR SINE MIR 80 258 -4 188 278 89 33 chr9 15567079 15567169 -102295458 + L2 LINE L2 3159 3253 -19 240 143 0 0 chr9 15568018 15568060 -102294567 + (A)n Simple_repeat Simple_repeat 1 42 0 200 188 0 0 chr9 15568462 15568494 -102294133 + polypyrimidine Low_complexity Low_complexity 2 33 0 572 274 111 13 chr9 15568835 15569061 -102293566 - MIR SINE MIR -3 259 12 320 176 24 47 chr9 15569186 15569271 -102293356 + MIR SINE MIR 110 192 -70 1225 171 121 44 chr9 15569318 15569709 -102292918 - MLT1C LTR MaLR 0 467 3 386 317 64 36 chr9 15570153 15570434 -102292193 + L2 LINE L2 2188 2476 -838 268 352 40 40 chr9 15570650 15570775 -102291852 + L2 LINE L2 3143 3267 -5 587 291 15 10 chr9 15570999 15571195 -102291432 - L2 LINE L2 -964 2350 2154 188 241 48 60 chr9 15571325 15571408 -102291219 - L2 LINE L2 -1064 2250 2169 618 213 6 25 chr9 15571828 15571988 -102290639 - L1ME3A LINE L1 -213 5940 5784 1054 264 56 60 chr9 15572004 15572633 -102289994 - L1ME3A LINE L1 -1794 4335 3710 680 311 70 39 chr9 15572691 15573430 -102289197 - L1ME3A LINE L1 -4579 1731 970 230 210 33 161 chr9 15573636 15573941 -102288686 - L1MC5 LINE L1 -52 7909 7644 680 299 59 29 chr9 15574002 15574457 -102288170 - L1ME3A LINE L1 -5204 915 447 22 0 0 0 chr9 15575270 15575292 -102287335 + AT_rich Low_complexity Low_complexity 1 22 0 734 251 17 0 chr9 15576160 15576335 -102286292 - MER5B DNA MER1_type 0 178 1 2067 108 0 18 chr9 15576531 15576817 -102285810 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr9 15576824 15576847 -102285780 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2120 78 0 0 chr9 15576864 15577148 -102285479 - L1PA6 LINE L1 -11 6143 5860 568 205 91 124 chr9 15577174 15577656 -102284971 + MER110A LTR ERV1 1 466 -2 198 277 179 18 chr9 15577831 15577943 -102284684 - MIR SINE MIR -99 163 34 267 186 39 108 chr9 15578233 15578335 -102284292 - L1MC5 LINE L1 -48 7913 7819 328 233 63 50 chr9 15578367 15578413 -102284214 - L1MC5 LINE L1 -222 7739 7695 180 0 0 0 chr9 15578413 15578433 -102284194 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 328 233 63 50 chr9 15578433 15578545 -102284082 - L1MC5 LINE L1 -266 7695 7579 693 36 0 0 chr9 15579218 15579313 -102283314 + (GGAAA)n Simple_repeat Simple_repeat 1 179 0 693 36 0 0 chr9 15579313 15579397 -102283230 + (GGAAA)n Simple_repeat Simple_repeat 5 88 0 2144 79 43 0 chr9 15580684 15580961 -102281666 + AluSc SINE Alu 1 289 -20 900 263 62 36 chr9 15581660 15581964 -102280663 + MLT1I LTR MaLR 98 409 0 246 184 0 0 chr9 15581985 15582034 -102280593 + L2 LINE L2 3265 3313 0 317 155 17 0 chr9 15582992 15583050 -102279577 - MER116 DNA Mariner -21 59 1 1211 292 47 43 chr9 15583334 15584035 -102278592 + L1MC4a LINE L1 5255 5958 -1850 19435 37 1 0 chr9 15584254 15587411 -102275216 + L1PA4 LINE L1 2995 6152 -3 24 32 0 0 chr9 15587539 15587570 -102275057 + AT_rich Low_complexity Low_complexity 1 31 0 550 343 0 27 chr9 15587580 15587799 -102274828 + L2 LINE L2 2665 2877 -437 2546 61 0 0 chr9 15589154 15589465 -102273162 - AluY SINE Alu 0 311 1 25 65 0 0 chr9 15589935 15589981 -102272646 + AT_rich Low_complexity Low_complexity 1 46 0 259 150 20 60 chr9 15589989 15590089 -102272538 + (TTAA)n Simple_repeat Simple_repeat 3 98 0 317 277 96 0 chr9 15590129 15590306 -102272321 + L1M4 LINE L1 4411 4604 -1542 2576 39 13 0 chr9 15590538 15590843 -102271784 - AluY SINE Alu -2 309 1 576 278 116 5 chr9 15591634 15591850 -102270777 + MIR SINE MIR 23 262 0 324 0 0 0 chr9 15592456 15592492 -102270135 + (CA)n Simple_repeat Simple_repeat 2 37 0 876 128 12 35 chr9 15592650 15592822 -102269805 - MER20 DNA MER1_type -26 193 26 266 213 46 28 chr9 15594450 15594558 -102268069 + (TTCA)n Simple_repeat Simple_repeat 3 112 0 413 291 48 0 chr9 15594562 15594665 -102267962 - L2 LINE L2 -4 3309 3202 423 298 146 6 chr9 15594677 15594848 -102267779 - MIR SINE MIR -48 214 20 291 294 94 25 chr9 15595603 15595763 -102266864 - MIR SINE MIR -26 236 66 662 232 20 13 chr9 15596931 15597082 -102265545 + MIR SINE MIR 79 230 -32 477 265 54 30 chr9 15597650 15597816 -102264811 + MIR3 SINE MIR 21 190 -18 1263 186 18 65 chr9 15599197 15599457 -102263170 + MER5C DNA MER1_type 3 245 -79 2388 58 0 3 chr9 15599457 15599749 -102262878 + AluY SINE Alu 16 306 -5 1263 186 18 65 chr9 15599749 15599826 -102262801 + MER5C DNA MER1_type 245 324 0 1950 184 37 3 chr9 15601016 15601369 -102261258 - MLT1A1 LTR MaLR 0 365 1 1353 194 95 0 chr9 15601373 15601656 -102260971 - MLT1A1-int LTR MaLR -6 1729 1420 1830 174 22 3 chr9 15601693 15602015 -102260612 - MLT2B1 LTR ERVL -192 328 1 650 211 58 23 chr9 15602024 15602195 -102260432 - MIR SINE MIR -68 194 18 386 292 94 21 chr9 15605441 15605819 -102256808 - L1MC4a LINE L1 -302 5819 5529 269 276 114 9 chr9 15606468 15606573 -102256054 + MIR SINE MIR 30 145 -63 362 126 0 17 chr9 15606761 15606827 -102255800 + L1MB7 LINE L1 6049 6113 -71 234 242 0 0 chr9 15606830 15606896 -102255731 + GA-rich Low_complexity Low_complexity 1 66 0 192 40 0 0 chr9 15606911 15606936 -102255691 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 222 326 130 22 chr9 15606979 15607209 -102255418 - MIR SINE MIR -6 256 2 1144 254 37 59 chr9 15607906 15608062 -102254565 + LTR16C LTR ERVL 96 254 -237 180 0 0 0 chr9 15608062 15608082 -102254545 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 321 26 0 0 chr9 15608081 15608119 -102254508 + (TA)n Simple_repeat Simple_repeat 1 38 0 1144 254 37 59 chr9 15608082 15608367 -102254260 + LTR16C LTR ERVL 254 491 0 183 120 0 0 chr9 15608845 15608870 -102253757 + L3b LINE CR1 1531 1555 -28 21 0 0 0 chr9 15610097 15610118 -102252509 + AT_rich Low_complexity Low_complexity 1 21 0 429 289 224 10 chr9 15610369 15610570 -102252057 + MIR SINE MIR 11 254 -8 366 218 57 65 chr9 15611032 15611156 -102251471 - L2 LINE L2 0 3313 3191 180 333 0 0 chr9 15611574 15611628 -102250999 - L2 LINE L2 -1 3312 3259 1283 209 57 43 chr9 15611693 15611880 -102250747 - MLT1A2 LTR MaLR 0 374 191 240 35 0 0 chr9 15611880 15611909 -102250718 + (GA)n Simple_repeat Simple_repeat 2 30 0 1283 209 57 43 chr9 15611909 15612090 -102250537 - MLT1A2 LTR MaLR -183 191 1 357 289 26 158 chr9 15612385 15612478 -102250149 - L2 LINE L2 0 3272 3168 2257 124 0 0 chr9 15612478 15612785 -102249842 + AluSx SINE Alu 3 309 -3 357 289 26 158 chr9 15612785 15613110 -102249517 - L2 LINE L2 -104 3168 2909 370 301 71 68 chr9 15613139 15613448 -102249179 - L2 LINE L2 -1153 2161 1852 240 35 0 0 chr9 15613580 15613609 -102249018 + (CA)n Simple_repeat Simple_repeat 2 30 0 326 257 46 0 chr9 15613668 15613777 -102248850 + L1ME4a LINE L1 6005 6118 -3 1649 178 52 14 chr9 15614975 15615262 -102247365 + AluJo SINE Alu 1 298 -14 230 339 16 48 chr9 15615262 15615386 -102247241 + MER5A DNA MER1_type 44 163 -26 235 314 85 8 chr9 15615842 15615960 -102246667 + MIR SINE MIR 122 248 -14 25 95 0 0 chr9 15616624 15616698 -102245929 + AT_rich Low_complexity Low_complexity 1 74 0 545 268 131 58 chr9 15616705 15617018 -102245609 - L1MC4a LINE L1 -1942 5866 5531 933 273 121 13 chr9 15617175 15617931 -102244696 + L1ME LINE L1 4968 5818 -348 633 291 138 0 chr9 15617941 15618130 -102244497 + MIR SINE MIR 28 242 -20 2647 119 19 21 chr9 15618899 15618965 -102243662 - MSTA LTR MaLR -1 427 362 2329 79 0 0 chr9 15618965 15619310 -102243317 + AluY SINE Alu 1 311 0 2647 119 19 21 chr9 15619310 15619671 -102242956 - MSTA LTR MaLR -66 362 1 214 262 243 0 chr9 15619743 15619850 -102242777 + MIR SINE MIR 14 146 -116 196 241 0 69 chr9 15619951 15620009 -102242618 - MIR SINE MIR -136 72 19 748 260 78 17 chr9 15622757 15622988 -102239639 + MIR SINE MIR 5 249 -13 1709 169 30 30 chr9 15623008 15623369 -102239258 - MER46B DNA MER2_type 0 236 1 420 218 129 67 chr9 15624769 15624962 -102237665 + MLT1K LTR MaLR 374 578 -10 361 258 114 53 chr9 15624986 15625118 -102237509 - MIR3 SINE MIR -64 144 5 603 102 0 0 chr9 15625648 15625736 -102236891 + (TCCC)n Simple_repeat Simple_repeat 4 91 0 329 235 122 10 chr9 15625744 15625842 -102236785 - L2 LINE L2 -10 3262 3154 516 176 0 0 chr9 15625872 15625974 -102236653 + (TG)n Simple_repeat Simple_repeat 1 102 0 318 344 19 17 chr9 15626434 15626624 -102236003 - MIR SINE MIR -50 212 22 191 288 188 12 chr9 15626941 15627021 -102235606 + L2 LINE L2 2825 2918 -395 * 666 236 14 0 chr9 15627013 15627161 -102235466 - MIR SINE MIR -100 162 13 187 103 0 0 chr9 15627551 15627580 -102235047 + L2 LINE L2 3285 3313 0 227 268 98 24 chr9 15628372 15628454 -102234173 + MIR SINE MIR 116 203 -59 986 265 57 16 chr9 15628935 15629252 -102233375 - MER46C DNA MER2_type -3 335 6 31 26 0 0 chr9 15629583 15629621 -102233006 + AT_rich Low_complexity Low_complexity 1 38 0 8226 168 14 47 chr9 15629623 15632277 -102230350 - L1PA16 LINE L1 -16 6150 3614 739 197 94 18 chr9 15632808 15633031 -102229596 + MER69 DNA AcHobo 2153 2392 -134 181 205 77 0 chr9 15633202 15633241 -102229386 - L2 LINE L2 -26 3246 3205 22 80 0 0 chr9 15633911 15633961 -102228666 + AT_rich Low_complexity Low_complexity 1 50 0 363 73 0 0 chr9 15634823 15634878 -102227749 + (CA)n Simple_repeat Simple_repeat 2 56 0 249 203 40 0 chr9 15634961 15635035 -102227592 + (TA)n Simple_repeat Simple_repeat 1 77 0 203 224 0 15 chr9 15635075 15635142 -102227485 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 444 254 61 18 chr9 15635965 15636079 -102226548 - L2 LINE L2 -5 3308 3190 2212 105 3 0 chr9 15636793 15637079 -102225548 - AluSx SINE Alu -25 287 1 1882 131 0 34 chr9 15637957 15638268 -102224359 + AluSx SINE Alu 1 301 0 290 247 65 21 chr9 15638747 15638840 -102223787 + MIR SINE MIR 96 192 -70 1179 163 13 96 chr9 15639022 15639148 -102223479 + AluJo SINE Alu 15 150 -162 2301 97 0 0 chr9 15639148 15639448 -102223179 + AluSx SINE Alu 1 300 -12 1179 163 13 96 chr9 15639448 15639634 -102222993 + AluJo SINE Alu 150 301 -11 231 238 36 0 chr9 15640172 15640256 -102222371 + (CTA)n Simple_repeat Simple_repeat 3 89 0 436 149 53 75 chr9 15640344 15640438 -102222189 - AluJb SINE Alu -23 289 198 311 343 73 56 chr9 15642467 15642645 -102219982 - MIR3 SINE MIR -15 193 13 23 0 0 0 chr9 15643462 15643485 -102219142 + AT_rich Low_complexity Low_complexity 1 23 0 211 212 0 45 chr9 15643686 15643752 -102218875 + G-rich Low_complexity Low_complexity 3 65 0 997 212 0 0 chr9 15644760 15644949 -102217678 + MER5A DNA MER1_type 1 189 0 387 127 0 0 chr9 15646452 15646515 -102216112 + (CA)n Simple_repeat Simple_repeat 2 64 0 26 30 0 0 chr9 15646520 15646553 -102216074 + AT_rich Low_complexity Low_complexity 1 33 0 687 197 41 0 chr9 15647420 15647567 -102215060 + LTR65 LTR ERV1 18 170 -499 699 236 26 73 chr9 15649140 15649187 -102213440 - MER58A DNA MER1_type -2198 222 174 2139 104 14 0 chr9 15649187 15649490 -102213137 - AluSx SINE Alu 0 307 1 699 236 26 73 chr9 15649490 15649674 -102212953 - MER58A DNA MER1_type -2246 174 1 623 250 110 15 chr9 15649723 15649923 -102212704 + MIR SINE MIR 34 252 -10 323 342 125 47 chr9 15650159 15650972 -102211655 + L2 LINE L2 2332 3268 -4 381 248 13 129 chr9 15653215 15653333 -102209294 + L1MC4 LINE L1 7743 7873 -169 2235 90 0 17 chr9 15653333 15653632 -102208995 + AluSg SINE Alu 1 294 -16 381 248 13 129 chr9 15653632 15653815 -102208812 + L1MC4 LINE L1 7873 8009 -33 226 333 0 0 chr9 15653846 15653912 -102208715 + MER5B DNA MER1_type 50 115 -63 2501 236 39 55 chr9 15654053 15654848 -102207779 + L1M3e LINE L1 7 813 -6294 2067 132 0 0 chr9 15654848 15655137 -102207490 + AluSq SINE Alu 1 289 -24 2501 236 39 55 chr9 15655137 15656107 -102206520 + L1M3e LINE L1 813 2923 -4184 2228 105 0 22 chr9 15657328 15657642 -102204985 + AluSx SINE Alu 1 307 -5 237 271 0 14 chr9 15658632 15658702 -102203925 + (TA)n Simple_repeat Simple_repeat 2 70 0 248 302 81 0 chr9 15659118 15659204 -102203423 - MIR SINE MIR -3 259 167 209 227 182 36 chr9 15660523 15660633 -102201994 + MIR SINE MIR 127 252 -10 191 200 0 67 chr9 15660602 15660647 -102201980 + L2 LINE L2 3226 3267 -5 * 213 154 0 0 chr9 15660766 15660805 -102201822 + T-rich Low_complexity Low_complexity 1 39 0 41762 34 22 21 chr9 15661240 15667135 -102195492 + L1PA2 LINE L1 1 5905 -250 26 30 0 0 chr9 15667486 15667519 -102195108 + AT_rich Low_complexity Low_complexity 1 33 0 249 167 0 33 chr9 15667677 15667737 -102194890 + L1ME3 LINE L1 6104 6161 -1 28 0 0 0 chr9 15668066 15668094 -102194533 + AT_rich Low_complexity Low_complexity 1 28 0 258 132 0 0 chr9 15669672 15669725 -102192902 + (TC)n Simple_repeat Simple_repeat 2 54 0 342 0 0 0 chr9 15669835 15669873 -102192754 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 32 0 0 chr9 15670916 15670947 -102191680 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 15673661 15673684 -102188943 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 15675496 15675519 -102187108 + AT_rich Low_complexity Low_complexity 1 23 0 24 53 0 0 chr9 15676232 15676270 -102186357 + AT_rich Low_complexity Low_complexity 1 38 0 180 299 149 0 chr9 15676850 15676917 -102185710 + MIR3 SINE MIR 113 189 -19 1321 178 9 33 chr9 15678828 15679043 -102183584 + L1 LINE L1 4983 5189 -957 1625 161 0 58 chr9 15679043 15679354 -102183273 + AluJo SINE Alu 1 293 -19 1321 178 9 33 chr9 15679354 15679470 -102183157 + L1 LINE L1 5189 5306 -840 268 329 0 0 chr9 15680867 15680940 -102181687 + MLT1F LTR MaLR 1 73 -469 606 129 10 0 chr9 15681309 15681410 -102181217 - AluJ SINE Alu -20 292 191 812 176 7 0 chr9 15681410 15681552 -102181075 - AluJ SINE Alu -165 147 5 564 270 28 24 chr9 15681585 15681796 -102180831 - L1ME LINE L1 -347 5774 5563 1286 248 118 40 chr9 15682035 15682584 -102180043 - MLT1G1 LTR MaLR 0 595 4 4402 163 52 30 chr9 15682888 15684029 -102178598 + L1MB1 LINE L1 4991 6168 0 884 175 6 35 chr9 15684613 15684784 -102177843 - FRAM SINE Alu 0 166 1 2636 164 51 15 chr9 15684852 15685401 -102177226 - L1M2 LINE L1 -4381 2828 2260 11177 94 9 2 chr9 15685401 15687784 -102174843 - L1PA7 LINE L1 0 6469 4076 4613 107 0 5 chr9 15687785 15688412 -102174215 - L1PA7 LINE L1 -5834 627 4 256 100 25 0 chr9 15688416 15688456 -102174171 - THE1A LTR MaLR -120 235 195 1640 158 0 40 chr9 15688502 15688805 -102173822 + AluJb SINE Alu 5 295 -17 27 0 0 0 chr9 15688808 15688835 -102173792 + AT_rich Low_complexity Low_complexity 1 27 0 6424 225 149 5 chr9 15688835 15690774 -102171853 - L1M2 LINE L1 -4977 2232 1 2038 174 74 71 chr9 15691318 15691942 -102170685 - L1ME LINE L1 -347 5819 5204 2008 229 42 4 chr9 15691938 15692531 -102170096 - L1ME1 LINE L1 -30 6154 5504 * 1311 186 129 0 chr9 15692798 15693077 -102169550 + MER58B DNA MER1_type 11 325 -16 635 142 25 8 chr9 15694180 15694300 -102168327 + L1MB8 LINE L1 6045 6166 -12 22 70 0 0 chr9 15694786 15694829 -102167798 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 15695407 15695434 -102167193 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr9 15695595 15695631 -102166996 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 15695892 15695914 -102166713 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 15696174 15696203 -102166424 + AT_rich Low_complexity Low_complexity 1 29 0 476 194 73 16 chr9 15697143 15697267 -102165360 + L1ME3 LINE L1 5589 5719 -443 737 198 36 44 chr9 15697275 15697477 -102165150 + L1ME3 LINE L1 5957 6161 -9 298 283 12 30 chr9 15697830 15697976 -102164651 + MER5A DNA MER1_type 1 143 -35 570 356 47 47 chr9 15698058 15698398 -102164229 - L2 LINE L2 0 3272 2933 225 333 25 0 chr9 15698700 15698781 -102163846 - L2 LINE L2 -792 2522 2440 818 272 115 59 chr9 15700961 15701628 -102160999 + L1ME2 LINE L1 5448 6151 -13 317 282 65 51 chr9 15701660 15701876 -102160751 + L1MC4 LINE L1 7822 8040 -2 25 0 0 0 chr9 15702213 15702238 -102160389 + AT_rich Low_complexity Low_complexity 1 25 0 645 189 76 80 chr9 15703569 15703710 -102158917 + MER112 DNA MER1_type 18 159 -101 707 179 126 0 chr9 15703710 15703861 -102158766 - FAM SINE Alu -2 173 4 645 189 76 80 chr9 15703861 15703957 -102158670 + MER112 DNA MER1_type 159 254 -6 304 350 10 10 chr9 15703958 15704061 -102158566 - L2 LINE L2 -517 2797 2695 252 0 0 0 chr9 15704211 15704239 -102158388 + (TG)n Simple_repeat Simple_repeat 2 29 0 28410 50 2 4 chr9 15704294 15708695 -102153932 + L1PA7 LINE L1 1761 6154 0 218 292 62 0 chr9 15708931 15708996 -102153631 + L2 LINE L2 3203 3271 -1 205 226 172 43 chr9 15709291 15709384 -102153243 + MIR SINE MIR 151 255 -7 233 303 149 46 chr9 15709388 15709563 -102153064 - MER117 DNA MER1_type -1 196 4 1810 167 0 0 chr9 15709684 15709966 -102152661 - AluJb SINE Alu -30 282 1 320 204 144 15 chr9 15710336 15710468 -102152159 + L1ME4a LINE L1 5946 6094 -27 233 246 0 0 chr9 15710834 15710895 -102151732 + L1MA4A LINE L1 3954 4014 -2132 5914 154 40 17 chr9 15710911 15712949 -102149678 + L1MA4A LINE L1 4222 6298 -5 240 111 0 0 chr9 15713608 15713644 -102148983 + (A)n Simple_repeat Simple_repeat 1 36 0 210 384 80 8 chr9 15713851 15713976 -102148651 - L2 LINE L2 -1 3271 3138 2004 158 15 40 chr9 15715741 15716141 -102146486 + MLT1B LTR MaLR 1 390 0 1972 101 7 37 chr9 15716256 15716554 -102146073 + AluSx SINE Alu 1 289 -23 1585 269 157 51 chr9 15716699 15718047 -102144580 - L1M4 LINE L1 -869 5277 3787 249 224 0 0 chr9 15718093 15718151 -102144476 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 742 188 35 14 chr9 15718272 15718416 -102144211 + MER106B DNA MER1_type 1 147 -912 1460 273 89 30 chr9 15718498 15719578 -102143049 + L1ME3A LINE L1 4735 5886 -284 1302 263 143 18 chr9 15719848 15720282 -102142345 + L2 LINE L2 2826 3313 0 857 295 61 14 chr9 15720645 15721004 -102141623 + L2 LINE L2 714 1089 -2225 2081 286 202 17 chr9 15721009 15722071 -102140556 + L2 LINE L2 2043 3313 0 26 74 0 0 chr9 15722084 15722138 -102140489 + AT_rich Low_complexity Low_complexity 1 54 0 1110 178 33 24 chr9 15722275 15722488 -102140139 - MER20 DNA MER1_type -4 215 1 24 32 0 0 chr9 15722551 15722582 -102140045 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 15724448 15724470 -102138157 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr9 15724589 15724618 -102138009 + AT_rich Low_complexity Low_complexity 1 29 0 342 302 39 8 chr9 15724713 15724837 -102137790 + MIR SINE MIR 37 165 -65 391 228 51 0 chr9 15726982 15727061 -102135566 + MER91C DNA MER1_type 25 107 -33 465 288 114 27 chr9 15727817 15728373 -102134254 + L1M4c LINE L1 846 1432 -4848 238 203 81 27 chr9 15728654 15728728 -102133899 - L2 LINE L2 -87 3226 3149 22 56 0 0 chr9 15729371 15729407 -102133220 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr9 15731543 15731581 -102131046 + AT_rich Low_complexity Low_complexity 1 38 0 14359 142 25 8 chr9 15732182 15732524 -102130103 - Tigger1 DNA MER2_type 0 2418 2083 2130 109 3 0 chr9 15732524 15732817 -102129810 + AluSc SINE Alu 10 303 -6 14359 142 25 8 chr9 15732817 15734803 -102127824 - Tigger1 DNA MER2_type -335 2083 48 291 28 0 0 chr9 15734803 15734839 -102127788 + (CA)n Simple_repeat Simple_repeat 2 37 0 14359 142 25 8 chr9 15734839 15734863 -102127764 - Tigger1 DNA MER2_type -2370 48 26 779 203 85 85 chr9 15734935 15735216 -102127411 + L1M4 LINE L1 4733 5013 -1133 342 268 229 16 chr9 15735362 15735545 -102127082 - MIR SINE MIR -10 252 31 1098 215 9 14 chr9 15735563 15735782 -102126845 - MER58A DNA MER1_type 0 224 7 2312 26 7 4 chr9 15736530 15736802 -102125825 - AluY SINE Alu 0 311 39 632 149 75 8 chr9 15737162 15737296 -102125331 + L1M4 LINE L1 5547 5689 -489 10681 182 26 19 chr9 15737299 15739334 -102123293 + L1MA8 LINE L1 723 2771 -4795 239 293 67 0 chr9 15739449 15739524 -102123103 - Tigger5 DNA MER2_type -7 2316 2237 436 230 11 0 chr9 15739535 15739622 -102123005 + Tigger5 DNA MER2_type 1 88 -2235 300 218 0 0 chr9 15739680 15739735 -102122892 - Tigger5 DNA MER2_type -2267 56 2 9812 204 24 53 chr9 15739736 15741965 -102120662 + L1MA8 LINE L1 3093 4891 -2674 3900 92 29 2 chr9 15741965 15742516 -102120111 + L1PA10 LINE L1 5589 6160 -8 9812 204 24 53 chr9 15742516 15744301 -102118326 + L1MA8 LINE L1 4891 6727 -838 1392 211 11 8 chr9 15744302 15744563 -102118064 + Tigger7 DNA MER2_type 2 263 -2224 516 198 0 10 chr9 15744568 15744664 -102117963 + Tigger7 DNA MER2_type 2397 2491 0 4641 166 45 18 chr9 15744664 15745620 -102117007 + L1MA8 LINE L1 6726 7707 -3 286 247 101 107 chr9 15745882 15746060 -102116567 - MER5B DNA MER1_type 0 178 2 191 337 133 0 chr9 15746104 15746202 -102116425 + L2 LINE L2 3162 3272 0 207 277 0 0 chr9 15747154 15747201 -102115426 + MIR3 SINE MIR 139 185 -23 2058 122 27 3 chr9 15747391 15747687 -102114940 + AluSx SINE Alu 1 303 -9 189 147 0 0 chr9 15747869 15747903 -102114724 + (TATG)n Simple_repeat Simple_repeat 3 36 0 2069 124 0 0 chr9 15748070 15748378 -102114249 + AluSx SINE Alu 1 308 0 776 271 58 19 chr9 15748536 15748794 -102113833 + MLT1L LTR MaLR 343 610 -5 224 238 12 0 chr9 15748881 15748965 -102113662 + (TA)n Simple_repeat Simple_repeat 1 85 0 496 307 193 5 chr9 15748986 15749204 -102113423 + MIR SINE MIR 1 259 -3 337 325 116 47 chr9 15749216 15749536 -102113091 - L2 LINE L2 -1 3312 2971 305 318 8 76 chr9 15749571 15749703 -102112924 + L2 LINE L2 3150 3272 0 313 304 20 10 chr9 15749861 15749963 -102112664 + L2 LINE L2 3178 3280 -33 541 266 52 31 chr9 15750286 15750335 -102112292 + L2 LINE L2 3113 3159 -154 189 74 0 0 chr9 15750335 15750362 -102112265 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 541 266 52 31 chr9 15750362 15750504 -102112123 + L2 LINE L2 3159 3308 -5 242 242 137 32 chr9 15750877 15750972 -102111655 - MIR SINE MIR -45 217 113 460 276 66 7 chr9 15751217 15751369 -102111258 + MIR SINE MIR 86 246 -16 262 129 32 16 chr9 15751407 15751469 -102111158 - MER116 DNA Mariner 0 80 18 26 30 0 0 chr9 15751984 15752017 -102110610 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 15752069 15752090 -102110537 + AT_rich Low_complexity Low_complexity 1 21 0 771 121 0 0 chr9 15752921 15753061 -102109566 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 425 340 35 0 chr9 15753163 15753307 -102109320 - MIR3 SINE MIR -10 198 50 223 222 0 0 chr9 15754142 15754187 -102108440 + L2 LINE L2 3261 3305 -8 423 0 0 0 chr9 15756556 15756603 -102106024 + (CA)n Simple_repeat Simple_repeat 1 47 0 1401 186 57 18 chr9 15757676 15757956 -102104671 - AluJo SINE Alu -15 297 7 222 355 11 32 chr9 15758293 15758386 -102104241 - L2 LINE L2 -36 3236 3146 186 164 194 15 chr9 15760001 15760068 -102102559 - L2 LINE L2 0 3272 3194 2246 129 0 0 chr9 15760159 15760470 -102102157 + AluSx SINE Alu 1 311 -1 205 292 163 34 chr9 15761584 15761793 -102100834 + L2 LINE L2 688 923 -2391 * 265 251 133 59 chr9 15761766 15761859 -102100768 + L2 LINE L2 3096 3181 -132 2474 63 0 3 chr9 15761859 15762160 -102100467 - AluY SINE Alu -11 300 1 265 251 133 59 chr9 15762160 15762269 -102100358 + L2 LINE L2 3181 3313 0 410 331 64 67 chr9 15762570 15762664 -102099963 + L2 LINE L2 1023 1116 -2198 2037 130 0 0 chr9 15762664 15762965 -102099662 + AluSx SINE Alu 3 303 -9 410 331 64 67 chr9 15762965 15763305 -102099322 + L2 LINE L2 1116 1456 -1858 2229 218 21 43 chr9 15765648 15765991 -102096636 - L1M4 LINE L1 -3339 2807 2481 2059 109 11 3 chr9 15765991 15766310 -102096317 + AluSq SINE Alu 1 321 0 2229 218 21 43 chr9 15766310 15766584 -102096043 - L1M4 LINE L1 -3665 2481 2202 21 0 0 0 chr9 15767153 15767174 -102095453 + AT_rich Low_complexity Low_complexity 1 21 0 1463 169 45 22 chr9 15767183 15767497 -102095130 - L1MB7 LINE L1 -7 6177 5857 192 304 0 51 chr9 15767664 15767743 -102094884 + MIR3 SINE MIR 126 200 -8 272 340 0 32 chr9 15768097 15768191 -102094436 + L2 LINE L2 3220 3310 -3 21 0 0 0 chr9 15770740 15770761 -102091866 + AT_rich Low_complexity Low_complexity 1 21 0 901 179 92 20 chr9 15771458 15771653 -102090974 + MIR SINE MIR 54 262 0 2321 106 0 0 chr9 15772419 15772721 -102089906 + AluSx SINE Alu 1 302 -10 1772 183 0 0 chr9 15772810 15773095 -102089532 - AluJb SINE Alu -27 285 1 573 140 22 0 chr9 15773141 15773277 -102089350 + (TA)n Simple_repeat Simple_repeat 1 139 0 497 253 75 6 chr9 15773498 15773672 -102088955 - L1ME LINE L1 -319 5802 5617 21 0 0 0 chr9 15774529 15774550 -102088077 + AT_rich Low_complexity Low_complexity 1 21 0 320 111 69 42 chr9 15774717 15774789 -102087838 + L1MA7 LINE L1 6218 6291 0 25 0 0 0 chr9 15774789 15774814 -102087813 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 15774936 15774959 -102087668 + AT_rich Low_complexity Low_complexity 1 23 0 217 322 119 28 chr9 15776611 15776754 -102085873 + MIR SINE MIR 57 212 -50 25 31 0 0 chr9 15777739 15777771 -102084856 + AT_rich Low_complexity Low_complexity 1 32 0 1907 244 64 40 chr9 15777935 15778593 -102084034 - L1ME2 LINE L1 -6 6158 5475 2510 104 16 8 chr9 15778593 15778978 -102083649 + L1PA13 LINE L1 5776 6163 0 1907 244 64 40 chr9 15778978 15779319 -102083308 - L1ME2 LINE L1 -689 5475 5144 268 39 481 0 chr9 15779801 15779853 -102082774 + MADE1 DNA Mariner 1 77 -3 286 172 62 31 chr9 15779902 15779966 -102082661 + L2 LINE L2 3247 3312 -1 27 0 0 0 chr9 15781283 15781310 -102081317 + AT_rich Low_complexity Low_complexity 1 27 0 1676 160 0 38 chr9 15785058 15785351 -102077276 + AluJb SINE Alu 1 282 -30 261 306 27 48 chr9 15785751 15785898 -102076729 - L2 LINE L2 -15 3298 3155 239 0 32 0 chr9 15786541 15786572 -102076055 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 897 171 51 0 chr9 15788168 15788343 -102074284 + MLT1C LTR MaLR 1 184 -283 1031 114 0 0 chr9 15788343 15788474 -102074153 + AluSg SINE Alu 1 131 -179 928 207 18 50 chr9 15788579 15788801 -102073826 + AluJb SINE Alu 95 309 -3 2157 43 0 0 chr9 15789285 15789543 -102073084 - L1PA3 LINE L1 0 6155 5898 2115 117 18 47 chr9 15790381 15790467 -102072160 - L1MA8 LINE L1 0 6291 6204 2112 117 9 25 chr9 15790467 15790784 -102071843 - AluSx SINE Alu 0 312 1 2115 117 18 47 chr9 15790784 15791081 -102071546 - L1MA8 LINE L1 -87 6204 5919 515 198 25 20 chr9 15792453 15792700 -102069927 + CT-rich Low_complexity Low_complexity 1 248 0 420 174 49 21 chr9 15792725 15792869 -102069758 + CT-rich Low_complexity Low_complexity 4 151 0 1626 152 7 40 chr9 15792878 15793155 -102069472 - AluJb SINE Alu -44 268 1 2528 50 0 0 chr9 15793790 15794092 -102068535 + AluY SINE Alu 1 302 -9 21 0 0 0 chr9 15794663 15794684 -102067943 + AT_rich Low_complexity Low_complexity 1 21 0 207 93 0 70 chr9 15795290 15795333 -102067294 + (TTTTTG)n Simple_repeat Simple_repeat 1 40 0 2065 131 7 3 chr9 15795741 15796039 -102066588 - AluSq SINE Alu -12 301 3 276 53 0 0 chr9 15797148 15797186 -102065441 + (CA)n Simple_repeat Simple_repeat 2 39 0 2280 139 8 16 chr9 15798462 15798829 -102063798 + THE1B LTR MaLR 1 364 0 239 309 74 0 chr9 15799165 15799246 -102063381 - L2 LINE L2 -4 3309 3223 320 0 25 0 chr9 15799367 15799407 -102063220 + (TATG)n Simple_repeat Simple_repeat 3 43 0 278 229 14 0 chr9 15799407 15799477 -102063150 + MER116 DNA Mariner 8 78 -2 767 144 8 0 chr9 15799958 15800076 -102062551 - AluJb SINE Alu -31 281 163 246 238 73 46 chr9 15800213 15800364 -102062263 + L1ME4a LINE L1 5964 6118 -3 192 323 54 39 chr9 15801518 15801648 -102060979 + L2 LINE L2 3179 3310 -3 603 317 72 73 chr9 15803232 15803838 -102058789 + L2 LINE L2 2613 3272 0 349 283 36 13 chr9 15804612 15804756 -102057871 + MIR SINE MIR 2 149 -62 858 125 0 0 chr9 15804999 15805119 -102057508 + AluSg/x SINE Alu 176 295 -17 948 218 76 8 chr9 15805136 15805398 -102057229 + MLT1C LTR MaLR 188 467 0 219 330 177 23 chr9 15805836 15806051 -102056576 + L2 LINE L2 2977 3224 -48 2114 114 3 0 chr9 15807446 15807743 -102054884 + AluSx SINE Alu 1 298 -14 2179 108 0 0 chr9 15809400 15809687 -102052940 + AluSq SINE Alu 1 287 -26 335 212 0 59 chr9 15810241 15810326 -102052301 - MIR SINE MIR -65 197 118 2750 183 27 24 chr9 15811717 15812265 -102050362 + MER44D DNA MER2_type 1 605 0 215 303 0 30 chr9 15812355 15812454 -102050173 + GA-rich Low_complexity Low_complexity 1 96 0 776 235 16 0 chr9 15813355 15813538 -102049089 - MER20 DNA MER1_type -28 191 6 655 116 0 0 chr9 15813590 15813685 -102048942 + AluSg/x SINE Alu 204 298 -12 360 297 72 9 chr9 15813982 15814093 -102048534 + L2 LINE L2 3196 3313 0 2097 113 43 60 chr9 15814135 15814505 -102048122 + THE1B LTR MaLR 1 364 0 585 278 11 0 chr9 15814749 15814925 -102047702 + MER20 DNA MER1_type 40 217 -2 207 211 0 0 chr9 15815073 15815111 -102047516 + MIR SINE MIR 92 129 -133 392 266 162 26 chr9 15815545 15815699 -102046928 + MIR SINE MIR 82 256 -6 261 241 46 35 chr9 15816338 15816425 -102046202 + MIR SINE MIR 162 249 -13 216 290 226 16 chr9 15817241 15817365 -102045262 - MIR SINE MIR -108 154 5 421 186 39 20 chr9 15817623 15817725 -102044902 + MIR SINE MIR 90 193 -69 22 35 0 0 chr9 15818429 15818458 -102044169 + AT_rich Low_complexity Low_complexity 1 29 0 344 198 33 44 chr9 15818683 15818774 -102043853 + L2 LINE L2 3224 3313 0 238 49 24 24 chr9 15819113 15819154 -102043473 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 189 229 62 0 chr9 15821121 15821169 -102041458 + L2 LINE L2 3187 3237 -35 441 281 41 34 chr9 15821200 15821346 -102041281 + L2 LINE L2 3163 3309 -4 255 233 27 67 chr9 15821953 15822103 -102040524 + L1MC4a LINE L1 5787 5930 -1878 374 231 81 131 chr9 15822246 15822666 -102039961 + L1ME4a LINE L1 5442 5919 -202 1224 205 11 32 chr9 15824209 15824487 -102038140 + MLT2D LTR ERVL 86 357 -57 468 0 0 0 chr9 15824487 15824539 -102038088 + (TC)n Simple_repeat Simple_repeat 1 52 0 323 264 145 14 chr9 15824762 15824939 -102037688 + MIR SINE MIR 2 209 -53 427 333 103 10 chr9 15825051 15825246 -102037381 - MIR SINE MIR -30 232 20 2158 127 0 7 chr9 15825399 15825707 -102036920 + AluSx SINE Alu 1 306 -6 316 255 28 28 chr9 15826727 15826833 -102035794 + MIR3 SINE MIR 85 190 -18 185 319 97 14 chr9 15826963 15827035 -102035592 - MIR3 SINE MIR -116 92 15 24 67 0 0 chr9 15827571 15827616 -102035011 + AT_rich Low_complexity Low_complexity 1 45 0 30 27 0 0 chr9 15828266 15828303 -102034324 + AT_rich Low_complexity Low_complexity 1 37 0 1951 148 10 0 chr9 15828309 15828606 -102034021 + AluJb SINE Alu 6 305 -7 798 63 16 24 chr9 15828608 15828735 -102033892 + (GGGAA)n Simple_repeat Simple_repeat 2 127 0 685 203 8 0 chr9 15828737 15828865 -102033762 + FLAM_C SINE Alu 2 130 -3 265 370 56 0 chr9 15831062 15831170 -102031457 + MIR SINE MIR 32 145 -63 430 172 126 13 chr9 15831356 15831507 -102031120 + MER113 DNA MER1_type? 4 171 -350 191 61 30 0 chr9 15831576 15831609 -102031018 + (CA)n Simple_repeat Simple_repeat 2 35 0 2258 92 3 3 chr9 15831685 15831979 -102030648 - AluSq SINE Alu -19 294 1 308 341 30 15 chr9 15832054 15832186 -102030441 + MER5B DNA MER1_type 15 148 -30 353 179 85 94 chr9 15832060 15832166 -102030461 - MER5A DNA MER1_type -22 167 63 728 255 86 29 chr9 15832702 15832945 -102029682 - MIR SINE MIR 0 262 6 407 217 9 12 chr9 15834199 15834308 -102028319 - L1MA9 LINE L1 -2 6289 6184 1195 290 69 13 chr9 15834768 15835304 -102027323 + L1ME3A LINE L1 5301 5867 -303 2905 145 50 2 chr9 15835470 15835932 -102026695 + L1MB2 LINE L1 5681 6164 -7 541 342 5 5 chr9 15836107 15836291 -102026336 - MIR SINE MIR -78 184 1 1282 166 43 9 chr9 15836489 15836700 -102025927 + MER20 DNA MER1_type 1 218 -1 261 0 0 0 chr9 15837258 15837287 -102025340 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 451 292 87 10 chr9 15837423 15837618 -102025009 + MLT1J1 LTR MaLR 1 210 -236 21 0 0 0 chr9 15837979 15838000 -102024627 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr9 15838469 15838517 -102024110 + AT_rich Low_complexity Low_complexity 1 48 0 214 309 0 0 chr9 15838797 15838852 -102023775 + GA-rich Low_complexity Low_complexity 2 56 0 1761 116 0 45 chr9 15841817 15842113 -102020514 - AluSg SINE Alu 0 310 27 423 38 0 0 chr9 15842248 15842301 -102020326 + (CA)n Simple_repeat Simple_repeat 2 54 0 208 241 69 78 chr9 15843186 15843302 -102019325 - MIR SINE MIR -56 206 92 377 267 139 35 chr9 15844203 15844405 -102018222 - LTR16C LTR ERVL -89 402 180 2370 100 3 0 chr9 15844714 15845024 -102017603 + AluY SINE Alu 1 311 0 785 251 86 25 chr9 15845154 15845397 -102017230 - MIR SINE MIR 0 262 5 494 248 202 14 chr9 15845637 15845855 -102016772 + MIR SINE MIR 2 260 -2 2040 114 19 19 chr9 15846358 15846673 -102015954 + THE1C LTR MaLR 61 375 0 461 200 27 0 chr9 15847835 15847945 -102014682 + L1M4 LINE L1 4642 4754 -1392 1117 193 40 40 chr9 15848120 15848369 -102014258 + AluJo SINE Alu 20 268 -44 1121 163 0 0 chr9 15848457 15848623 -102014004 - AluSg/x SINE Alu -22 290 125 1972 121 0 0 chr9 15848725 15848990 -102013637 - AluSx SINE Alu -44 268 4 22 70 0 0 chr9 15849209 15849252 -102013375 + AT_rich Low_complexity Low_complexity 1 43 0 1155 176 87 23 chr9 15849465 15849794 -102012833 + MSTD LTR MaLR 1 396 0 205 226 68 75 chr9 15849894 15850027 -102012600 + MIR SINE MIR 118 249 -13 24 0 0 0 chr9 15850696 15850720 -102011907 + AT_rich Low_complexity Low_complexity 1 24 0 370 257 79 46 chr9 15851032 15851184 -102011443 + MIR SINE MIR 33 189 -73 572 200 43 21 chr9 15853191 15853331 -102009296 - MER103 DNA DNA -1 165 23 21 0 0 0 chr9 15854028 15854049 -102008578 + AT_rich Low_complexity Low_complexity 1 21 0 396 271 203 21 chr9 15854745 15854937 -102007690 - MER102b DNA MER1_type -27 314 88 2372 134 26 0 chr9 15854967 15855317 -102007310 + THE1B LTR MaLR 6 364 0 273 91 23 0 chr9 15856519 15856563 -102006064 + MADE1 DNA Mariner 36 80 0 661 158 22 125 chr9 15856564 15856748 -102005879 + MLT1C LTR MaLR 303 467 0 24 32 0 0 chr9 15858216 15858247 -102004380 + AT_rich Low_complexity Low_complexity 1 31 0 2126 136 0 0 chr9 15858251 15858552 -102004075 + AluSq SINE Alu 1 301 -12 238 169 34 0 chr9 15858556 15858615 -102004012 + L1MC4 LINE L1 6640 6700 -1342 2057 113 20 0 chr9 15859142 15859435 -102003192 - AluSx SINE Alu -13 299 1 1300 201 22 128 chr9 15859645 15860053 -102002574 + MLT1A1 LTR MaLR 1 365 0 7803 201 67 24 chr9 15860066 15861691 -102000936 + MLT1A1-int LTR MaLR 36 1730 -5 237 250 88 0 chr9 15861741 15861809 -102000818 + MLT1A1 LTR MaLR 292 365 0 192 352 19 0 chr9 15861843 15861897 -102000730 + L2 LINE L2 3121 3175 -97 607 234 120 17 chr9 15861943 15862118 -102000509 + MIR SINE MIR 57 249 -13 200 333 0 48 chr9 15862124 15862208 -102000419 + L2 LINE L2 3193 3272 0 1754 173 130 8 chr9 15862457 15862810 -101999817 + MSTD LTR MaLR 1 396 0 1366 113 0 0 chr9 15863661 15863855 -101998772 + LTR9B LTR ERV1 451 644 0 2159 216 31 48 chr9 15863856 15864371 -101998256 + HUERS-P3b LTR ERV1 2 507 -6911 4202 126 3 10 chr9 15864401 15865053 -101997574 + HUERS-P3b LTR ERV1 764 1483 -5935 184 227 107 0 chr9 15865053 15865128 -101997499 - MER5C DNA MER1_type -241 83 1 6571 110 31 9 chr9 15865128 15866127 -101996500 + HUERS-P3b LTR ERV1 1559 2642 -4776 2491 180 33 2 chr9 15866127 15866555 -101996072 - LTR8 LTR ERV1 -250 441 1 6073 87 1 20 chr9 15866555 15867372 -101995255 + HUERS-P3b LTR ERV1 3073 3874 -3544 * 16512 107 28 9 chr9 15867365 15869920 -101992707 + HUERS-P3b LTR ERV1 2123 7411 -7 3535 92 32 43 chr9 15869921 15870485 -101992142 + LTR9B LTR ERV1 1 558 -86 318 50 0 0 chr9 15870485 15870525 -101992102 + (CA)n Simple_repeat Simple_repeat 1 40 0 464 314 57 31 chr9 15870928 15871122 -101991505 - MIR SINE MIR -13 249 51 231 36 0 0 chr9 15871531 15871559 -101991068 + (CA)n Simple_repeat Simple_repeat 1 28 0 204 358 75 33 chr9 15871724 15871844 -101990783 - L2 LINE L2 -10 3262 3138 259 320 205 24 chr9 15872156 15872493 -101990134 - L2 LINE L2 -676 2638 2241 2681 96 5 40 chr9 15873366 15873741 -101988886 - THE1B LTR MaLR -2 362 1 633 274 155 9 chr9 15873967 15874186 -101988441 - MIR SINE MIR 0 262 12 337 320 8 23 chr9 15875118 15875246 -101987381 + MIR SINE MIR 53 178 -84 282 296 122 17 chr9 15875846 15875961 -101986666 + MIR SINE MIR 28 154 -108 1796 187 35 140 chr9 15875962 15876528 -101986099 + MLT2B3 LTR ERVL 1 507 -47 309 109 0 0 chr9 15876529 15876575 -101986052 + (TAGG)n Simple_repeat Simple_repeat 1 46 0 276 232 0 0 chr9 15876580 15876636 -101985991 + MLT2B3 LTR ERVL 465 520 0 187 139 28 0 chr9 15876678 15876714 -101985913 + MIR SINE MIR 226 262 0 618 205 26 53 chr9 15876740 15876891 -101985736 + MER5A DNA MER1_type 1 147 -42 839 277 36 5 chr9 15876918 15877142 -101985485 + MIR SINE MIR 20 250 -12 2335 90 3 0 chr9 15877267 15877566 -101985061 - AluSx SINE Alu -12 300 1 2409 107 0 0 chr9 15878337 15878646 -101983981 - AluSx SINE Alu -3 309 1 3286 71 0 12 chr9 15879163 15879585 -101983042 + L1PA8 LINE L1 5755 6171 -1 201 162 0 0 chr9 15879707 15879744 -101982883 + T-rich Low_complexity Low_complexity 5 41 0 443 143 0 12 chr9 15880426 15880510 -101982117 + (GGGA)n Simple_repeat Simple_repeat 3 85 0 187 268 18 0 chr9 15880946 15881002 -101981625 + L3b LINE CR1 1256 1312 -271 198 277 0 0 chr9 15881577 15881624 -101981003 + MIR SINE MIR 103 149 -113 904 195 32 45 chr9 15882153 15882374 -101980253 + MER20 DNA MER1_type 2 219 0 488 335 58 11 chr9 15883191 15883382 -101979245 + L3b LINE CR1 1249 1448 -135 795 104 0 0 chr9 15883470 15883576 -101979051 + U6 snRNA snRNA 1 106 -1 1424 70 11 0 chr9 15883577 15883763 -101978864 + L1PA10 LINE L1 5964 6151 -17 504 295 46 43 chr9 15883864 15884193 -101978434 + MER102b DNA MER1_type 4 333 -8 637 265 24 12 chr9 15884754 15884924 -101977703 - MER5B DNA MER1_type 0 178 7 427 285 65 25 chr9 15884926 15885126 -101977501 + MIR SINE MIR 22 229 -33 1719 166 17 27 chr9 15885452 15885748 -101976879 + AluJo SINE Alu 6 298 -14 306 279 111 17 chr9 15887316 15887488 -101975139 + L1MEc LINE L1 2216 2403 -3993 14593 60 2 3 chr9 15887852 15889879 -101972748 - L1P LINE L1 -2446 3700 1675 235 256 110 0 chr9 15891051 15891133 -101971494 - MIR SINE MIR -61 201 111 2148 142 0 0 chr9 15893554 15893856 -101968771 + AluSx SINE Alu 1 302 -10 342 0 0 0 chr9 15895014 15895052 -101967575 + (CA)n Simple_repeat Simple_repeat 1 38 0 189 74 0 0 chr9 15896679 15896706 -101965921 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr9 15897325 15897354 -101965273 + AT_rich Low_complexity Low_complexity 1 29 0 2327 91 0 0 chr9 15897356 15897654 -101964973 - AluY SINE Alu -13 298 1 282 149 0 0 chr9 15897660 15897707 -101964920 - AluJo SINE Alu -166 136 90 1245 265 91 3 chr9 15898140 15898502 -101964125 + L2 LINE L2 2046 2439 -875 1139 250 63 16 chr9 15898552 15899032 -101963595 + MLT1E LTR MaLR 1 593 0 1514 272 49 43 chr9 15899032 15899682 -101962945 + L2 LINE L2 2520 3194 -119 552 86 0 12 chr9 15899682 15899763 -101962864 + MADE1 DNA Mariner 1 80 0 1514 272 49 43 chr9 15899763 15899884 -101962743 + L2 LINE L2 3194 3313 0 2153 129 0 3 chr9 15899979 15900282 -101962345 + AluSq SINE Alu 1 302 -11 338 285 72 12 chr9 15900583 15900835 -101961792 + L1ME LINE L1 5635 5818 -303 1388 162 139 35 chr9 15901031 15901370 -101961257 + MLT1A2 LTR MaLR 1 374 0 2315 110 7 0 chr9 15901427 15901736 -101960891 + AluSx SINE Alu 1 311 -1 965 261 76 58 chr9 15902765 15903251 -101959376 + MLT1J LTR MaLR 3 497 -14 2137 115 23 10 chr9 15903557 15903862 -101958765 - AluSx SINE Alu -3 309 1 929 98 0 0 chr9 15903911 15904034 -101958593 + AluSg/x SINE Alu 176 298 -14 416 269 130 43 chr9 15904258 15904466 -101958161 + MIR SINE MIR 37 262 0 803 165 0 0 chr9 15904788 15904909 -101957718 + FLAM_C SINE Alu 1 121 -22 2218 59 0 11 chr9 15906432 15906703 -101955924 - AluY SINE Alu -9 302 35 652 216 196 5 chr9 15906981 15907185 -101955442 + MIR SINE MIR 11 253 -9 632 328 87 52 chr9 15907729 15908423 -101954204 - L1 LINE L1 -987 5159 4446 2173 98 0 0 chr9 15909513 15909799 -101952828 + AluSx SINE Alu 27 312 0 2265 41 0 0 chr9 15910456 15910724 -101951903 - AluY SINE Alu -3 308 41 256 83 21 0 chr9 15910914 15910962 -101951665 - L1MA8 LINE L1 -5 6286 6238 1688 162 3 14 chr9 15910962 15911252 -101951375 - AluJo SINE Alu -15 297 11 279 322 33 25 chr9 15911980 15912101 -101950526 - MER5A DNA MER1_type 0 189 68 198 71 0 0 chr9 15912258 15912286 -101950341 + (CAT)n Simple_repeat Simple_repeat 1 28 0 329 357 52 7 chr9 15912294 15912448 -101950179 - MIR SINE MIR -12 250 90 607 213 18 18 chr9 15912545 15912583 -101950044 + L1ME LINE L1 5625 5662 -500 2132 182 65 5 chr9 15912583 15912985 -101949642 - MSTB LTR MaLR 0 426 1 607 213 18 18 chr9 15912985 15913115 -101949512 + L1ME LINE L1 5661 5793 -369 2309 110 0 0 chr9 15913156 15913466 -101949161 - AluSg SINE Alu 0 310 1 440 287 91 32 chr9 15913478 15913819 -101948808 - L1ME LINE L1 -301 5820 5460 192 125 0 0 chr9 15914024 15914056 -101948571 + (A)n Simple_repeat Simple_repeat 1 32 0 1383 161 59 59 chr9 15914248 15914553 -101948074 + AluJb SINE Alu 4 308 -4 205 349 47 0 chr9 15915343 15915449 -101947178 - MIR SINE MIR -23 239 129 1892 127 0 0 chr9 15915474 15915727 -101946900 - AluSq SINE Alu -60 253 1 759 290 67 8 chr9 15915729 15915967 -101946660 - MIR SINE MIR -6 256 5 393 315 109 18 chr9 15916587 15916917 -101945710 - L1ME4a LINE L1 -228 5893 5534 710 262 34 52 chr9 15917345 15917850 -101944777 - MER39 LTR ERV1 -3 640 5 327 246 35 9 chr9 15918021 15918135 -101944492 - MER103 DNA DNA -4 162 46 180 0 0 0 chr9 15918183 15918203 -101944424 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 320 293 43 64 chr9 15918907 15919075 -101943552 - L2 LINE L2 -1 3312 3147 634 227 0 0 chr9 15919075 15919207 -101943420 + FLAM_A SINE Alu 1 132 -1 320 293 43 64 chr9 15919207 15919226 -101943401 - L2 LINE L2 -166 3147 3129 715 21 0 0 chr9 15919589 15919684 -101942943 + MER41A LTR ERV1 402 496 -58 363 94 0 2 chr9 15919724 15919779 -101942848 + MER41A LTR ERV1 501 554 0 267 154 320 13 chr9 15919779 15919857 -101942770 + MER41A-int LTR ERV1 1 102 -5844 4955 120 49 5 chr9 15919869 15920671 -101941956 + MER41A-int LTR ERV1 4 840 -5106 2574 138 45 31 chr9 15920671 15920791 -101941836 + MER41A-int LTR ERV1 1567 1684 -6132 204 40 0 0 chr9 15920791 15920816 -101941811 + (TC)n Simple_repeat Simple_repeat 2 26 0 2574 138 45 31 chr9 15920816 15921316 -101941311 + MER41A-int LTR ERV1 1684 3757 -4059 * 12892 87 19 6 chr9 15921305 15923558 -101939069 + MER41A-int LTR ERV1 2856 5944 -2 3247 82 2 25 chr9 15923558 15923893 -101938734 + MER41A LTR ERV1 1 323 -231 2361 95 0 3 chr9 15923893 15924198 -101938429 + AluSg SINE Alu 1 304 -6 3247 82 2 25 chr9 15924198 15924339 -101938288 + MER41A LTR ERV1 323 466 -88 415 211 232 7 chr9 15924786 15924928 -101937699 - MIR SINE MIR 0 262 89 296 233 0 0 chr9 15925030 15925090 -101937537 - MIR SINE MIR -73 135 76 1795 172 0 16 chr9 15925220 15925523 -101937104 - AluJo SINE Alu -14 298 1 349 284 41 47 chr9 15925798 15925967 -101936660 + MIR SINE MIR 89 256 -6 21 36 0 0 chr9 15926003 15926031 -101936596 + AT_rich Low_complexity Low_complexity 1 28 0 1287 125 64 50 chr9 15926037 15926089 -101936538 + L1MC2 LINE L1 6060 6110 -234 2171 114 13 0 chr9 15926089 15926387 -101936240 + AluSx SINE Alu 1 302 -10 1287 125 64 50 chr9 15926387 15926614 -101936013 + L1MC2 LINE L1 6110 6343 -1 205 231 64 77 chr9 15927557 15927635 -101934992 + MER91C DNA MER1_type 32 108 -32 613 156 28 9 chr9 15927850 15927959 -101934668 - MER5B DNA MER1_type -67 111 1 22 35 0 0 chr9 15928711 15928740 -101933887 + AT_rich Low_complexity Low_complexity 1 29 0 197 275 87 0 chr9 15929408 15929477 -101933150 + MIR SINE MIR 110 184 -78 1542 199 20 7 chr9 15929479 15929775 -101932852 - AluJb SINE Alu -12 300 1 264 296 89 37 chr9 15931925 15932060 -101930567 + MLT1I LTR MaLR 1 142 -267 304 233 14 0 chr9 15932276 15932349 -101930278 + MLT1I LTR MaLR 316 389 -20 1236 128 10 5 chr9 15932657 15932852 -101929775 + AluSg/x SINE Alu 108 303 -9 439 128 13 26 chr9 15933351 15933429 -101929198 - MADE1 DNA Mariner -3 77 1 697 75 0 19 chr9 15934426 15934533 -101928094 + (TTCC)n Simple_repeat Simple_repeat 1 105 0 183 80 0 0 chr9 15934533 15934558 -101928069 + (TC)n Simple_repeat Simple_repeat 1 25 0 1730 163 10 27 chr9 15934558 15934858 -101927769 - AluJo SINE Alu -17 295 1 190 266 31 16 chr9 15934988 15935052 -101927575 + L2 LINE L2 3208 3272 0 1693 134 10 51 chr9 15935305 15935597 -101927030 + AluSx SINE Alu 1 280 -32 539 263 285 0 chr9 15935727 15935955 -101926672 + L1ME3 LINE L1 5866 6158 -4 1687 185 0 17 chr9 15935981 15936268 -101926359 + AluJo SINE Alu 5 286 -26 557 39 0 13 chr9 15936271 15936348 -101926279 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 182 293 69 17 chr9 15936366 15936424 -101926203 - MIR SINE MIR -108 100 40 349 251 140 48 chr9 15936505 15936840 -101925787 + L1ME4a LINE L1 5726 6091 -30 2352 169 65 0 chr9 15937013 15937756 -101924871 + L1M1 LINE L1 14 959 -6606 * 6888 106 19 14 chr9 15937753 15938887 -101923740 + L1MA3 LINE L1 5167 6305 0 28 29 0 0 chr9 15939855 15939890 -101922737 + AT_rich Low_complexity Low_complexity 1 35 0 31963 110 12 57 chr9 15941304 15947744 -101914883 + L1PA7 LINE L1 1431 7572 -1 426 276 206 27 chr9 15949105 15949580 -101913047 + L2 LINE L2 1385 1944 -1370 1814 185 70 22 chr9 15949628 15950086 -101912541 - MER31A LTR ERV1 0 543 5 1144 271 171 35 chr9 15950087 15950802 -101911825 + L2 LINE L2 2029 2840 -474 309 283 33 33 chr9 15950846 15950938 -101911689 + LTR67 LTR ERVL 99 190 -367 745 237 17 78 chr9 15951334 15951455 -101911172 + MIR SINE MIR 44 146 -116 1694 180 0 24 chr9 15951455 15951749 -101910878 + AluJo SINE Alu 3 289 -23 745 237 17 78 chr9 15951749 15951859 -101910768 + MIR SINE MIR 146 261 -1 289 371 62 35 chr9 15951895 15952264 -101910363 + L2 LINE L2 2932 3310 -3 212 283 83 55 chr9 15952449 15952465 -101910162 - MIR SINE MIR -46 216 202 414 0 0 0 chr9 15952465 15952511 -101910116 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1626 178 33 4 chr9 15952511 15952786 -101909841 - AluJo SINE Alu -27 285 3 212 283 83 55 chr9 15952786 15952913 -101909714 - MIR SINE MIR -59 203 68 568 213 133 7 chr9 15952930 15953080 -101909547 + MIR SINE MIR 58 226 -36 3676 153 35 13 chr9 15953170 15953805 -101908822 + MER51A LTR ERV1 1 640 0 767 280 19 5 chr9 15954890 15955097 -101907530 - MIR SINE MIR -21 241 32 2575 105 18 7 chr9 15955153 15955562 -101907065 + LTR12 LTR ERV1 98 713 -1 2348 173 106 9 chr9 15955562 15958413 -101904214 - SATR1 Satellite Satellite -2 3126 1 2260 171 110 19 chr9 15958441 15959765 -101902862 - SATR1 Satellite Satellite -1 1444 1 2376 183 14 5 chr9 15959765 15960197 -101902430 + LTR22 LTR ERVK 2 437 -143 30230 65 4 12 chr9 15960197 15965015 -101897612 + L1PA6 LINE L1 1382 6153 -1 2505 159 148 9 chr9 15965015 15966376 -101896251 - SATR1 Satellite Satellite -24 1551 1 1246 206 235 2 chr9 15966391 15966852 -101895775 + SATR1 Satellite Satellite 1 568 -140 1737 145 0 4 chr9 15966863 15967125 -101895502 - AluSx SINE Alu -51 261 1 27 0 0 0 chr9 15967408 15967435 -101895192 + AT_rich Low_complexity Low_complexity 1 27 0 973 196 0 0 chr9 15967444 15967602 -101895025 + AluJb SINE Alu 129 286 -26 1957 48 4 0 chr9 15967892 15968123 -101894504 + AluY SINE Alu 1 232 -79 292 279 0 0 chr9 15968376 15968444 -101894183 - L2 LINE L2 -248 3065 2998 321 327 36 0 chr9 15968745 15968855 -101893772 - MIR SINE MIR -62 146 33 231 344 42 11 chr9 15968882 15969071 -101893556 - L2 LINE L2 0 3313 3119 3372 164 22 3 chr9 15969572 15970165 -101892462 + L1MB2 LINE L1 5512 6115 -56 1954 111 14 14 chr9 15970395 15970674 -101891953 - AluSg SINE Alu -31 279 1 22 0 0 0 chr9 15970674 15970696 -101891931 + AT_rich Low_complexity Low_complexity 1 22 0 265 333 12 0 chr9 15971463 15971547 -101891080 - L2 LINE L2 0 3313 3229 799 266 37 33 chr9 15971557 15971801 -101890826 - LTR40b LTR ERVL -6 456 212 205 331 70 25 chr9 15972004 15972161 -101890466 - L2 LINE L2 -422 2892 2729 180 216 0 180 chr9 15973618 15973729 -101888898 - MIR3 SINE MIR -11 197 107 2144 120 0 0 chr9 15974208 15974499 -101888128 + AluSx SINE Alu 16 306 -6 192 264 51 42 chr9 15974862 15975007 -101887620 + L2 LINE L2 2363 2979 -293 2167 140 0 0 chr9 15975432 15975453 -101887174 - AluSx SINE Alu -4 308 288 258 32 0 0 chr9 15975453 15975484 -101887143 + (TG)n Simple_repeat Simple_repeat 2 32 0 2167 140 0 0 chr9 15975484 15975770 -101886857 - AluSx SINE Alu -23 289 1 2430 161 85 5 chr9 15976669 15977092 -101885535 - MSTB2 LTR MaLR 0 457 1 375 371 8 0 chr9 15977501 15977625 -101885002 - MIR3 SINE MIR -54 154 30 22 0 0 0 chr9 15977802 15977824 -101884803 + AT_rich Low_complexity Low_complexity 1 22 0 1341 158 12 12 chr9 15977850 15978091 -101884536 - L1MA9 LINE L1 -5 6307 6067 629 290 58 37 chr9 15978112 15978491 -101884136 + L1ME4a LINE L1 5560 5946 -175 27 81 0 0 chr9 15978536 15978598 -101884029 + AT_rich Low_complexity Low_complexity 1 62 0 849 119 76 0 chr9 15978599 15978717 -101883910 - FLAM_C SINE Alu -16 127 1 420 270 113 0 chr9 15979197 15979312 -101883315 + L2 LINE L2 3145 3272 0 238 139 0 0 chr9 15979386 15979422 -101883205 - L2 LINE L2 -10 3303 3268 1903 139 24 7 chr9 15980310 15980598 -101882029 - AluSx SINE Alu -17 295 3 198 0 0 0 chr9 15981293 15981315 -101881312 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1964 166 0 0 chr9 15981341 15981642 -101880985 - AluJo SINE Alu -11 301 1 865 148 7 22 chr9 15982062 15982197 -101880430 + FLAM_C SINE Alu 1 133 0 730 268 53 14 chr9 15982306 15982515 -101880112 + MIR SINE MIR 1 217 -45 4813 138 47 12 chr9 15982521 15983403 -101879224 + L1MA7 LINE L1 5378 6290 -1 287 169 28 162 chr9 15983781 15983923 -101878704 + HAL1 LINE L1 35 157 -2350 1665 173 45 43 chr9 15983967 15984028 -101878599 + MLT1C LTR MaLR 65 124 -343 2358 109 0 0 chr9 15984028 15984340 -101878287 + AluSx SINE Alu 1 312 0 1665 173 45 43 chr9 15984340 15984677 -101877950 + MLT1C LTR MaLR 124 464 -3 409 247 120 50 chr9 15984699 15984999 -101877628 + HAL1 LINE L1 197 517 -1990 2198 129 0 0 chr9 15985051 15985346 -101877281 - AluSx SINE Alu -15 297 3 1748 174 159 29 chr9 15985352 15985806 -101876821 + MLT2B1 LTR ERVL 8 520 0 202 442 0 0 chr9 15985935 15986107 -101876520 + (CACCC)n Simple_repeat Simple_repeat 3 174 0 1746 238 92 65 chr9 15986119 15987174 -101875453 + HAL1 LINE L1 759 1842 -665 589 234 166 0 chr9 15987178 15987323 -101875304 - MER5A DNA MER1_type -10 179 11 2427 54 24 3 chr9 15988085 15988383 -101874244 + AluY SINE Alu 1 304 -7 736 334 26 13 chr9 15988484 15988786 -101873841 + L3 LINE CR1 591 896 -681 282 206 359 8 chr9 15988795 15988926 -101873701 + L3 LINE CR1 1242 1418 -159 2232 104 0 16 chr9 15989519 15989835 -101872792 + AluSx SINE Alu 1 311 -1 291 291 134 24 chr9 15990077 15990204 -101872423 - MIR SINE MIR -96 166 26 379 274 137 8 chr9 15991740 15991864 -101870763 - MIR3 SINE MIR -15 193 54 276 222 26 111 chr9 15991863 15991980 -101870647 + L2 LINE L2 3160 3266 -6 * 273 306 204 0 chr9 15992651 15992808 -101869819 + MER5A DNA MER1_type 1 189 0 346 217 7 7 chr9 15994388 15994540 -101868087 + (CA)n Simple_repeat Simple_repeat 1 152 0 322 316 22 0 chr9 15994552 15994688 -101867939 + (CA)n Simple_repeat Simple_repeat 1 139 0 274 327 9 9 chr9 15995338 15995448 -101867179 + GA-rich Low_complexity Low_complexity 3 112 0 407 247 64 78 chr9 15997051 15997347 -101865280 + L1M4 LINE L1 3718 4009 -2137 704 281 73 25 chr9 15997363 15997840 -101864787 + L1M4 LINE L1 4110 4609 -1537 270 152 40 20 chr9 15997850 15997949 -101864678 + (TA)n Simple_repeat Simple_repeat 2 102 0 304 225 38 38 chr9 15997953 15998033 -101864594 + L1MCa LINE L1 1995 2074 -4352 * 454 305 63 37 chr9 15998021 15998290 -101864337 + L1M4 LINE L1 4620 4895 -1251 2211 123 3 10 chr9 15998394 15998703 -101863924 + AluSx SINE Alu 1 307 -5 858 154 20 36 chr9 15998725 15998920 -101863707 - L1 LINE L1 -1544 4602 4411 7454 142 15 2 chr9 15998945 16000195 -101862432 + HSMAR2 DNA Mariner 36 1301 -1 1960 182 7 2 chr9 16000236 16000642 -101861985 + L1MA10 LINE L1 4629 5036 -1110 5246 158 37 19 chr9 16000747 16001003 -101861624 + L1MA10 LINE L1 5221 5471 -863 3237 90 16 5 chr9 16001003 16001449 -101861178 - MLT2A2 LTR ERVL -2 451 1 5246 158 37 19 chr9 16001449 16002130 -101860497 + L1MA10 LINE L1 5471 6183 -151 180 111 0 0 chr9 16002130 16002157 -101860470 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 5246 158 37 19 chr9 16002157 16002312 -101860315 + L1MA10 LINE L1 6183 6334 0 199 237 0 34 chr9 16003572 16003631 -101858996 - L2 LINE L2 -92 3221 3165 196 116 47 0 chr9 16005432 16005475 -101857152 - MIR SINE MIR -51 211 167 270 0 0 0 chr9 16005691 16005721 -101856906 + (A)n Simple_repeat Simple_repeat 1 30 0 185 318 38 38 chr9 16005780 16005912 -101856715 - L2 LINE L2 -464 2850 2719 296 279 0 0 chr9 16006351 16006419 -101856208 - L2 LINE L2 -248 3065 2998 327 327 36 0 chr9 16006720 16006830 -101855797 - MIR SINE MIR -62 146 33 258 344 42 11 chr9 16006857 16007046 -101855581 - L2 LINE L2 0 3313 3119 3091 169 20 2 chr9 16007546 16008139 -101854488 + L1MB2 LINE L1 5512 6115 -56 2308 65 4 0 chr9 16008369 16008648 -101853979 - AluY SINE Alu -31 280 1 22 35 0 0 chr9 16008662 16008691 -101853936 + AT_rich Low_complexity Low_complexity 1 29 0 1808 150 3 59 chr9 16009272 16009592 -101853035 + AluSx SINE Alu 1 302 -10 193 273 107 33 chr9 16011481 16011631 -101850996 - MIR SINE MIR -2 260 100 320 293 48 34 chr9 16011954 16012162 -101850465 + L1ME LINE L1 5475 5685 -436 405 197 0 0 chr9 16012352 16012418 -101850209 + AluJ/FLAM SINE Alu 19 84 -228 1932 157 0 0 chr9 16012538 16012824 -101849803 + AluSx SINE Alu 1 286 -26 309 103 44 0 chr9 16012824 16012892 -101849735 + (TA)n Simple_repeat Simple_repeat 1 71 0 25 65 0 0 chr9 16012913 16012959 -101849668 + AT_rich Low_complexity Low_complexity 1 46 0 21 104 0 0 chr9 16012987 16013064 -101849563 + AT_rich Low_complexity Low_complexity 1 77 0 1213 236 79 52 chr9 16013191 16013708 -101848919 - L1MC4 LINE L1 -4 8038 7508 2137 245 188 64 chr9 16013710 16013894 -101848733 - L1MC4a LINE L1 -696 7112 6952 1656 239 20 64 chr9 16013894 16014438 -101848189 + MLT2B1 LTR ERVL 1 520 0 2137 245 188 64 chr9 16014438 16015369 -101847258 - L1MC4a LINE L1 -856 6952 5739 1695 185 18 0 chr9 16015369 16015650 -101846977 - AluJb SINE Alu -24 288 3 2137 245 188 64 chr9 16015650 16016122 -101846505 - L1MC4a LINE L1 -2069 5739 5327 186 128 0 0 chr9 16016361 16016400 -101846227 + (A)n Simple_repeat Simple_repeat 1 39 0 409 281 37 22 chr9 16016787 16016922 -101845705 + MIR3 SINE MIR 12 148 -60 1092 71 7 0 chr9 16016931 16017072 -101845555 - AluSg/x SINE Alu -5 307 166 250 182 18 0 chr9 16017389 16017444 -101845183 - Charlie1b DNA MER1_type -1 522 467 247 222 116 61 chr9 16017678 16017876 -101844751 + L1ME LINE L1 5690 5898 -223 2260 128 0 0 chr9 16018384 16018696 -101843931 - AluSx SINE Alu 0 312 1 491 236 79 53 chr9 16019578 16019767 -101842860 + MIR SINE MIR 18 214 -48 312 298 123 35 chr9 16019900 16020071 -101842556 + MIR3 SINE MIR 16 201 -7 302 301 51 3 chr9 16020349 16020475 -101842152 + MIR SINE MIR 7 147 -61 622 217 18 24 chr9 16020686 16020852 -101841775 - L1ME3 LINE L1 -8 6154 5990 1275 183 0 3 chr9 16020879 16021107 -101841520 + MLT2B1 LTR ERVL 275 494 -26 801 211 143 4 chr9 16021107 16021373 -101841254 - L1ME3 LINE L1 -216 5954 5652 264 256 12 0 chr9 16021397 16021479 -101841148 - L1ME3 LINE L1 -479 5683 5601 259 299 140 19 chr9 16021582 16021621 -101841006 - L2 LINE L2 -11 3302 3269 3262 161 12 2 chr9 16021621 16022136 -101840491 + MLT2B1 LTR ERVL 1 520 0 259 299 140 19 chr9 16022136 16022203 -101840424 - L2 LINE L2 -44 3269 3183 223 366 20 10 chr9 16022352 16022453 -101840174 + MIR SINE MIR 25 126 -82 2051 134 0 0 chr9 16022693 16023000 -101839627 + AluSq SINE Alu 1 307 0 1697 190 10 10 chr9 16023155 16023466 -101839161 - AluJb SINE Alu -1 311 1 1516 205 51 0 chr9 16023495 16023851 -101838776 + Charlie1b DNA MER1_type 1 374 -149 25 0 0 0 chr9 16023956 16023981 -101838646 + GC_rich Low_complexity Low_complexity 1 25 0 200 296 0 42 chr9 16024240 16024311 -101838316 - L2 LINE L2 -1 3312 3245 861 214 86 19 chr9 16025107 16025317 -101837310 - MIR SINE MIR -1 261 38 705 236 129 18 chr9 16025488 16025713 -101836914 + MIR SINE MIR 13 262 0 1190 214 0 16 chr9 16026203 16026446 -101836181 + MER8 DNA MER2_type 1 239 0 858 195 32 41 chr9 16026670 16026891 -101835736 - MER20 DNA MER1_type 0 219 1 1326 160 82 57 chr9 16027966 16028247 -101834380 + AluJo SINE Alu 1 288 -24 1945 152 7 0 chr9 16028254 16028543 -101834084 + AluSx SINE Alu 1 291 -21 30 0 0 0 chr9 16028545 16028575 -101834052 + AT_rich Low_complexity Low_complexity 1 30 0 1591 45 10 0 chr9 16028811 16029011 -101833616 + L1PA4 LINE L1 5954 6155 0 305 296 88 60 chr9 16029105 16029321 -101833306 + L1MC4a LINE L1 5752 5973 -1835 378 206 274 0 chr9 16030548 16030650 -101831977 + L2 LINE L2 3168 3297 -16 21 57 0 0 chr9 16031081 16031116 -101831511 + AT_rich Low_complexity Low_complexity 1 35 0 362 281 163 0 chr9 16031407 16031567 -101831060 + L1ME LINE L1 5608 5793 -328 407 264 132 0 chr9 16031824 16031968 -101830659 + Charlie1 DNA MER1_type 1434 1596 -1165 441 235 0 0 chr9 16031968 16032053 -101830574 + FLAM_A SINE Alu 39 123 -19 1318 192 197 22 chr9 16032086 16032633 -101829994 + Charlie1 DNA MER1_type 1624 2266 -495 3601 56 0 0 chr9 16033069 16033516 -101829111 - L1PA6 LINE L1 0 6154 5708 253 247 22 45 chr9 16033566 16033655 -101828972 + MIR SINE MIR 76 162 -100 21 36 0 0 chr9 16034048 16034076 -101828551 + AT_rich Low_complexity Low_complexity 1 28 0 2188 98 0 0 chr9 16034076 16034350 -101828277 + AluSq SINE Alu 1 274 -39 1880 114 46 0 chr9 16034373 16034635 -101827992 - AluSx SINE Alu -8 304 31 350 272 39 19 chr9 16036712 16036815 -101825812 - MIR SINE MIR -71 191 87 271 321 30 30 chr9 16037335 16037466 -101825161 - L1ME LINE L1 -376 5745 5615 240 143 0 0 chr9 16037469 16037511 -101825116 + (TG)n Simple_repeat Simple_repeat 1 42 0 343 208 141 10 chr9 16037542 16037725 -101824902 - L1M2 LINE L1 -798 5493 5293 336 324 50 27 chr9 16037804 16038066 -101824561 - L1ME LINE L1 -990 5156 4889 486 292 133 22 chr9 16039160 16039386 -101823241 + MIR SINE MIR 12 262 0 279 189 54 14 chr9 16040065 16040139 -101822488 + Charlie5 DNA MER1_type 36 112 -2500 1276 150 158 47 chr9 16040165 16040418 -101822209 - AluJo SINE Alu -30 282 2 340 132 143 0 chr9 16040477 16040568 -101822059 + Charlie5 DNA MER1_type 2416 2519 -93 221 222 159 79 chr9 16041176 16041302 -101821325 - MIR SINE MIR -14 248 113 2100 116 20 0 chr9 16041332 16041625 -101821002 - AluSq SINE Alu -14 299 1 297 203 101 13 chr9 16042121 16042200 -101820427 + MER117 DNA MER1_type 5 90 -107 1674 148 63 25 chr9 16042615 16042899 -101819728 - AluJb SINE Alu -17 295 1 936 174 34 6 chr9 16043524 16043702 -101818925 + MER2 DNA MER2_type 28 210 -135 568 196 220 0 chr9 16043810 16043983 -101818644 - MER58C DNA MER1_type -4 211 1 2064 108 7 0 chr9 16044065 16044369 -101818258 + AluSc SINE Alu 1 306 0 189 312 151 0 chr9 16045390 16045483 -101817144 + MIR SINE MIR 34 140 -122 231 351 0 26 chr9 16045501 16045611 -101817016 - MIR SINE MIR -109 153 47 396 299 185 0 chr9 16045611 16045768 -101816859 - MER5A DNA MER1_type 0 189 4 571 200 97 40 chr9 16045777 16045952 -101816675 - MER5A DNA MER1_type 0 189 5 203 228 54 54 chr9 16046139 16046231 -101816396 + MIR SINE MIR 170 261 -1 2171 116 3 0 chr9 16047648 16047942 -101814685 + AluSq SINE Alu 1 295 -18 184 245 57 0 chr9 16048023 16048076 -101814551 - MIR3 SINE MIR -15 193 138 22 0 0 0 chr9 16048820 16048842 -101813785 + AT_rich Low_complexity Low_complexity 1 22 0 1823 256 185 74 chr9 16049812 16049878 -101812749 + L2 LINE L2 635 692 -2622 1912 157 27 0 chr9 16049878 16050172 -101812455 + AluJb SINE Alu 11 312 0 1823 256 185 74 chr9 16050172 16050183 -101812444 + L2 LINE L2 692 700 -2614 252 0 0 0 chr9 16050183 16050211 -101812416 + (TA)n Simple_repeat Simple_repeat 1 28 0 1823 256 185 74 chr9 16050211 16051347 -101811280 + L2 LINE L2 700 2066 -1248 1562 168 14 31 chr9 16051347 16051639 -101810988 - AluJo SINE Alu -21 291 5 1823 256 185 74 chr9 16051639 16051999 -101810628 + L2 LINE L2 2066 2385 -929 7063 25 7 0 chr9 16051999 16052828 -101809799 - L1PA4 LINE L1 -2 6153 5319 1086 246 28 7 chr9 16052830 16053118 -101809509 + L2 LINE L2 2393 2686 -628 34067 77 3 7 chr9 16053118 16058625 -101804002 + L1PA6 LINE L1 666 6146 -8 966 167 33 0 chr9 16058625 16058805 -101803822 + Tigger1 DNA MER2_type 2232 2417 -1 1994 158 3 0 chr9 16058913 16059216 -101803411 + AluSx SINE Alu 1 304 -8 218 32 32 0 chr9 16059559 16059590 -101803037 + (TTA)n Simple_repeat Simple_repeat 1 32 0 2183 88 28 3 chr9 16059592 16059877 -101802750 - AluY SINE Alu -19 292 1 1975 190 55 39 chr9 16060033 16060522 -101802105 + MLT1D LTR MaLR 7 503 -2 734 231 172 13 chr9 16060529 16060767 -101801860 + MLT1G LTR MaLR 10 285 -305 198 156 0 0 chr9 16060780 16060825 -101801802 + GA-rich Low_complexity Low_complexity 2 46 0 880 149 25 65 chr9 16060907 16061108 -101801519 + L1MA2 LINE L1 6101 6293 -11 432 262 87 29 chr9 16061135 16061307 -101801320 + MLT1G LTR MaLR 379 560 -7 24 0 0 0 chr9 16062520 16062544 -101800083 + AT_rich Low_complexity Low_complexity 1 24 0 29 70 0 0 chr9 16063379 16063436 -101799191 + AT_rich Low_complexity Low_complexity 1 57 0 739 269 52 24 chr9 16064024 16064273 -101798354 + MIR SINE MIR 4 259 -3 386 359 70 0 chr9 16064274 16064430 -101798197 - MIR3 SINE MIR -10 198 32 21459 35 1 0 chr9 16064453 16067862 -101794765 + L1PA4 LINE L1 2737 6155 0 823 133 0 44 chr9 16068325 16068460 -101794167 - FLAM_C SINE Alu -4 129 1 283 288 44 12 chr9 16069414 16069574 -101793053 + L1MC4a LINE L1 5666 5830 -1978 180 0 0 0 chr9 16069628 16069648 -101792979 + (TA)n Simple_repeat Simple_repeat 2 21 0 285 236 45 45 chr9 16069727 16069837 -101792790 + L1MC4a LINE L1 6067 6176 -1632 1036 184 0 31 chr9 16069986 16070182 -101792445 + AluJo SINE Alu 1 190 -122 708 191 93 131 chr9 16070397 16070764 -101791863 + L1MC5 LINE L1 6650 7002 -959 560 188 8 16 chr9 16070944 16071072 -101791555 + L1ME1 LINE L1 6033 6159 -7 1710 244 136 31 chr9 16071095 16071663 -101790964 + L2 LINE L2 1713 2357 -957 1916 210 38 46 chr9 16071663 16072101 -101790526 + MLT1D LTR MaLR 5 440 -65 2362 93 0 3 chr9 16072101 16072413 -101790214 - AluY SINE Alu 0 311 1 1916 210 38 46 chr9 16072413 16072478 -101790149 + MLT1D LTR MaLR 440 504 -1 1710 244 136 31 chr9 16072478 16072547 -101790080 + L2 LINE L2 2357 2417 -897 308 315 108 0 chr9 16072563 16072674 -101789953 + L2 LINE L2 3191 3313 0 2235 131 0 0 chr9 16072909 16073221 -101789406 - AluSx SINE Alu 0 312 1 892 181 34 0 chr9 16073329 16073506 -101789121 - Tigger1 DNA MER2_type -1 2417 2235 5342 64 4 3 chr9 16073506 16074205 -101788422 - L1PA6 LINE L1 -5 6149 5450 384 264 122 0 chr9 16074482 16074679 -101787948 - MER112 DNA MER1_type 0 260 40 981 241 38 13 chr9 16075124 16075360 -101787267 + MIR SINE MIR 9 250 -12 1272 157 90 4 chr9 16075425 16075680 -101786947 - L1M4 LINE L1 -985 5161 4885 1670 109 0 38 chr9 16076179 16076418 -101786209 - AluSg/x SINE Alu -5 307 78 927 161 12 48 chr9 16077301 16077469 -101785158 + FRAM SINE Alu 1 160 -16 1850 91 9 3 chr9 16077836 16078274 -101784353 - L1P LINE L1 -744 5410 4418 5464 90 1 13 chr9 16078274 16078708 -101783919 + L1PA7 LINE L1 5395 5820 -334 2286 78 3 7 chr9 16078708 16079004 -101783623 + AluSc SINE Alu 1 295 -14 5464 90 1 13 chr9 16079004 16079336 -101783291 + L1PA7 LINE L1 5820 6154 0 211 305 146 12 chr9 16079578 16079660 -101782967 + MIR3 SINE MIR 14 106 -102 23 0 0 0 chr9 16080203 16080226 -101782401 + AT_rich Low_complexity Low_complexity 1 23 0 2030 132 3 0 chr9 16080417 16080704 -101781923 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 16080711 16080732 -101781895 + AT_rich Low_complexity Low_complexity 1 21 0 1028 133 0 0 chr9 16080740 16080883 -101781744 + AluSg/x SINE Alu 126 268 -44 725 130 0 8 chr9 16080887 16081018 -101781609 + (GGAA)n Simple_repeat Simple_repeat 2 131 0 560 223 122 101 chr9 16081931 16082357 -101780270 + LTR37B LTR ERV1 1 435 -33 838 281 62 9 chr9 16082379 16082699 -101779928 + L1MC/D LINE L1 5328 5664 -2144 939 223 47 0 chr9 16082817 16083010 -101779617 - MER58A DNA MER1_type -22 202 1 21 57 0 0 chr9 16083141 16083176 -101779451 + AT_rich Low_complexity Low_complexity 1 35 0 225 298 35 0 chr9 16083507 16083564 -101779063 + AluS SINE Alu 2 60 -243 180 111 0 0 chr9 16083675 16083702 -101778925 + (A)n Simple_repeat Simple_repeat 1 27 0 1998 135 3 0 chr9 16083814 16084103 -101778524 - AluSg SINE Alu -20 290 1 1876 176 68 47 chr9 16084109 16084155 -101778472 - L1MB7 LINE L1 -2 6168 6124 2046 142 3 3 chr9 16084155 16084451 -101778176 - AluSx SINE Alu -16 296 1 1876 176 68 47 chr9 16084451 16084902 -101777725 - L1MB7 LINE L1 -46 6124 5625 377 285 135 5 chr9 16085124 16085331 -101777296 - L1M4 LINE L1 -1488 4658 4425 547 283 102 20 chr9 16085351 16085659 -101776968 - L2 LINE L2 -272 3041 2709 326 171 129 14 chr9 16086348 16086418 -101776209 + LTR33A LTR ERVL 444 521 -2 1837 113 102 4 chr9 16086918 16087192 -101775435 + AluSq SINE Alu 1 301 -12 22 0 0 0 chr9 16089135 16089157 -101773470 + AT_rich Low_complexity Low_complexity 1 22 0 763 268 0 25 chr9 16089536 16089812 -101772815 - L1P LINE L1 -1936 4210 3942 18603 90 5 6 chr9 16089820 16092429 -101770198 + L1P LINE L1 2762 5367 -779 1158 52 0 0 chr9 16092429 16092563 -101770064 + AluYa5 SINE Alu 1 134 -177 1192 249 7 20 chr9 16093773 16094066 -101768561 + AluSx SINE Alu 1 289 -13 5985 179 28 63 chr9 16094073 16094266 -101768361 + L1M3 LINE L1 3994 4192 -1976 2329 105 0 0 chr9 16094266 16094570 -101768057 + AluSg SINE Alu 4 307 -3 5985 179 28 63 chr9 16094570 16095748 -101766879 + L1M3 LINE L1 4192 5324 -844 1750 195 0 0 chr9 16095748 16096040 -101766587 + AluJb SINE Alu 1 292 -20 5985 179 28 63 chr9 16096040 16096217 -101766410 + L1M3 LINE L1 5324 5506 -662 2357 124 58 0 chr9 16096217 16096563 -101766064 + MSTC LTR MaLR 1 366 -62 305 170 0 0 chr9 16096562 16096615 -101766012 + Alu SINE Alu 250 302 0 * 241 327 33 65 chr9 16097693 16097846 -101764781 + MIR3 SINE MIR 57 204 -4 22 35 0 0 chr9 16098981 16099010 -101763617 + AT_rich Low_complexity Low_complexity 1 29 0 508 155 103 10 chr9 16099173 16099270 -101763357 - U6 snRNA snRNA -1 106 1 662 293 150 34 chr9 16101315 16101816 -101760811 - L1ME4a LINE L1 -70 6051 5493 228 361 92 8 chr9 16102011 16102130 -101760497 + L2 LINE L2 3139 3267 -5 337 174 139 76 chr9 16102320 16102464 -101760163 + MER112 DNA MER1_type 7 159 -101 192 211 39 19 chr9 16103558 16103610 -101759017 - MIR SINE MIR -112 150 98 515 207 27 9 chr9 16103627 16103738 -101758889 + MLT1J LTR MaLR 17 129 -382 1876 181 11 43 chr9 16103773 16104148 -101758479 - MLT1A2 LTR MaLR -11 363 1 484 336 179 6 chr9 16104148 16104466 -101758161 + MLT1J LTR MaLR 139 511 0 254 337 10 20 chr9 16104466 16104564 -101758063 - MIR SINE MIR -164 98 2 564 155 43 15 chr9 16105314 16105448 -101757179 - L1MC4 LINE L1 -2 8039 7668 1809 203 31 50 chr9 16105515 16105997 -101756630 - L1MC4 LINE L1 -125 7917 7445 1822 141 46 0 chr9 16106443 16106726 -101755901 - AluJb SINE Alu -16 296 1 25 0 0 0 chr9 16107193 16107218 -101755409 + AT_rich Low_complexity Low_complexity 1 25 0 195 285 135 75 chr9 16108139 16108458 -101754169 + L3b LINE CR1 1133 1470 -113 2080 137 13 0 chr9 16108475 16108781 -101753846 + AluSx SINE Alu 1 310 -2 1786 235 73 7 chr9 16109160 16109582 -101753045 - LTR40c LTR ERVL -12 453 4 2179 107 0 7 chr9 16109918 16110209 -101752418 - AluJo SINE Alu -23 289 1 267 245 157 14 chr9 16111170 16111317 -101751310 + L2 LINE L2 2332 2499 -815 734 260 140 1 chr9 16112164 16112408 -101750219 + L1M4 LINE L1 4703 4989 -1157 979 130 19 0 chr9 16112479 16112633 -101749994 + LTR54B LTR ERV1 1 157 -341 805 250 0 0 chr9 16112635 16112799 -101749828 + FRAM SINE Alu 2 165 -11 1468 177 53 3 chr9 16112799 16113098 -101749529 + LTR54B LTR ERV1 185 498 0 21 36 0 0 chr9 16113103 16113131 -101749496 + AT_rich Low_complexity Low_complexity 1 28 0 386 188 38 0 chr9 16113151 16113231 -101749396 + L1ME1 LINE L1 5740 5822 -344 735 186 16 0 chr9 16113241 16113365 -101749262 + FLAM_C SINE Alu 2 127 -6 1443 188 19 50 chr9 16113379 16113657 -101748970 + AluJo SINE Alu 1 269 -43 1854 131 163 27 chr9 16113657 16113956 -101748671 + MSTA LTR MaLR 3 365 -63 2359 106 0 0 chr9 16113956 16114259 -101748368 - AluSx SINE Alu -9 303 1 1854 131 163 27 chr9 16114259 16114334 -101748293 + MSTA LTR MaLR 365 428 0 1443 188 19 50 chr9 16114334 16114374 -101748253 + AluJo SINE Alu 269 309 -3 317 94 38 0 chr9 16114375 16114428 -101748199 + GA-rich Low_complexity Low_complexity 4 58 0 316 136 0 25 chr9 16114432 16114513 -101748114 + (CTG)n Simple_repeat Simple_repeat 2 80 0 1146 122 0 0 chr9 16114527 16114707 -101747920 + (TCC)n Simple_repeat Simple_repeat 1 180 0 379 141 13 39 chr9 16114836 16114914 -101747713 - L1MC1 LINE L1 -235 6098 6023 1751 164 7 27 chr9 16115079 16115378 -101747249 + AluJo SINE Alu 1 293 -19 681 281 134 9 chr9 16116203 16116434 -101746193 + MIR SINE MIR 3 262 0 375 320 28 11 chr9 16117600 16117781 -101744846 + MARNA DNA Mariner 389 572 -14 784 264 25 36 chr9 16118156 16118433 -101744194 + L2 LINE L2 2191 2464 -850 570 234 144 0 chr9 16118436 16118603 -101744024 + L2 LINE L2 2605 2795 -519 2279 212 25 39 chr9 16118642 16118882 -101743745 + LTR40a LTR ERVL 7 249 -270 2075 125 0 7 chr9 16118882 16119185 -101743442 + AluSg SINE Alu 1 301 -9 2279 212 25 39 chr9 16119185 16119463 -101743164 + LTR40a LTR ERVL 249 518 -1 739 264 36 48 chr9 16119464 16119797 -101742830 + L2 LINE L2 2826 3154 -159 888 233 82 0 chr9 16119799 16120005 -101742622 - MER58A DNA MER1_type -1 223 1 1333 89 0 0 chr9 16120117 16120285 -101742342 + AluSg/x SINE Alu 145 312 0 807 246 41 9 chr9 16120363 16120583 -101742044 + L1ME1 LINE L1 5935 6161 -5 690 281 104 5 chr9 16120597 16120818 -101741809 + MLT1I LTR MaLR 167 409 0 1677 168 106 38 chr9 16121372 16121741 -101740886 - MSTD LTR MaLR 0 396 3 2072 139 0 0 chr9 16121872 16122166 -101740461 - AluSx SINE Alu -18 294 1 2169 177 14 8 chr9 16122543 16122904 -101739723 + MLT1A1 LTR MaLR 3 365 0 368 185 31 154 chr9 16123132 16123239 -101739388 + L1ME LINE L1 5610 5684 -437 1565 174 21 7 chr9 16123239 16123520 -101739107 + AluJb SINE Alu 1 285 -27 368 185 31 154 chr9 16123520 16123607 -101739020 + L1ME LINE L1 5684 5780 -341 278 155 17 0 chr9 16123615 16123673 -101738954 - L1MD3 LINE L1 -10 7985 7927 2179 122 3 7 chr9 16123676 16123979 -101738648 + AluSx SINE Alu 1 302 -10 1536 234 92 34 chr9 16124004 16124452 -101738175 - MLT1E2 LTR MaLR 0 626 153 2090 125 0 37 chr9 16125609 16125930 -101736697 - AluSx SINE Alu -1 311 3 2135 127 0 3 chr9 16126045 16126344 -101736283 + AluSg SINE Alu 1 298 -12 200 250 45 0 chr9 16126621 16126665 -101735962 + L2 LINE L2 3219 3264 -8 1215 67 11 11 chr9 16127311 16127491 -101735136 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 454 157 13 7 chr9 16127491 16127637 -101734990 + GA-rich Low_complexity Low_complexity 1 146 0 234 206 81 169 chr9 16128477 16128637 -101733990 - MER5A DNA MER1_type 0 189 33 508 261 97 32 chr9 16129000 16129389 -101733238 + MLT1K LTR MaLR 99 588 0 270 261 22 22 chr9 16129435 16129527 -101733100 - L2 LINE L2 -673 2641 2550 2036 135 0 28 chr9 16129617 16129936 -101732691 + AluSx SINE Alu 1 310 -2 2361 82 3 0 chr9 16130061 16130355 -101732272 + AluSc SINE Alu 5 299 -10 458 199 19 2 chr9 16131189 16131310 -101731317 - L1M LINE L1 -795 5379 5254 22 70 0 0 chr9 16131465 16131508 -101731119 + AT_rich Low_complexity Low_complexity 1 43 0 1312 256 19 19 chr9 16131659 16132078 -101730549 + L1PBb LINE L1 480 989 -5214 1530 179 10 10 chr9 16132091 16132403 -101730224 + L1PBb LINE L1 1042 1353 -4850 1714 169 23 19 chr9 16132664 16132972 -101729655 - HUERS-P3 LTR ERV1 -8382 537 229 10042 26 0 197 chr9 16133038 16134787 -101727840 + SVA Other Other 1 1412 0 6555 183 9 46 chr9 16134787 16136747 -101725880 + L1PBb LINE L1 1333 3222 -2981 2161 137 0 0 chr9 16136747 16137047 -101725580 + AluSx SINE Alu 1 300 -12 6555 183 9 46 chr9 16137047 16137425 -101725202 + L1PBb LINE L1 3222 3612 -2591 1100 177 0 30 chr9 16138219 16138417 -101724210 - AluSg/x SINE Alu -20 290 99 1782 184 3 0 chr9 16138986 16139280 -101723347 - AluJo SINE Alu -17 295 1 484 297 188 25 chr9 16140059 16140622 -101722005 + L1MC4a LINE L1 5282 5936 -1872 1027 159 0 33 chr9 16141851 16142033 -101720594 - FRAM SINE Alu -3 173 1 694 199 60 7 chr9 16142252 16142403 -101720224 - L1PB4 LINE L1 -7 6149 5991 2979 160 21 0 chr9 16143130 16143600 -101719027 + ERVL LTR ERVL 3697 4176 -1588 272 214 18 0 chr9 16145025 16145081 -101717546 + L1MC5 LINE L1 7311 7367 -594 1628 257 20 20 chr9 16145274 16145718 -101716909 + L1MC4a LINE L1 7365 7808 0 16387 126 21 7 chr9 16146057 16146909 -101715718 + Tigger1 DNA MER2_type 2 840 -1578 2333 102 0 3 chr9 16146909 16147214 -101715413 + AluSg SINE Alu 1 304 -6 16387 126 21 7 chr9 16147214 16148744 -101713883 + Tigger1 DNA MER2_type 840 2418 0 317 264 25 74 chr9 16148985 16149106 -101713521 + L1ME LINE L1 308 422 -5950 274 213 25 25 chr9 16149116 16149196 -101713431 + L1ME LINE L1 1262 1341 -5043 * 1165 250 147 42 chr9 16149194 16149697 -101712930 + L1ME LINE L1 1559 2008 -4555 2090 119 0 3 chr9 16149697 16149982 -101712645 + AluSg SINE Alu 1 284 -26 234 0 0 0 chr9 16149982 16150008 -101712619 + (TA)n Simple_repeat Simple_repeat 2 27 0 1165 250 147 42 chr9 16150008 16150258 -101712369 + L1ME LINE L1 2007 2392 -4171 1273 224 67 14 chr9 16150322 16150693 -101711934 + L1ME LINE L1 2471 2861 -3521 304 93 0 23 chr9 16150705 16150748 -101711879 - MER3 DNA MER1_type -167 42 1 2741 42 0 0 chr9 16150974 16151285 -101711342 + AluY SINE Alu 1 311 0 214 313 61 10 chr9 16152013 16152112 -101710515 + MIR3 SINE MIR 102 205 -3 2378 94 0 0 chr9 16152240 16152549 -101710078 + AluSc SINE Alu 1 309 0 2143 112 0 0 chr9 16153951 16154228 -101708399 + AluSx SINE Alu 1 277 -35 1000 127 0 0 chr9 16154897 16155039 -101707588 + AluSp/q SINE Alu 156 297 -16 1204 152 8 99 chr9 16155313 16155528 -101707099 + MER2 DNA MER2_type 1 189 -156 2107 130 3 0 chr9 16155528 16155827 -101706800 - AluSx SINE Alu -12 300 1 1204 152 8 99 chr9 16155827 16155874 -101706753 + MER2 DNA MER2_type 189 239 -106 5267 135 40 128 chr9 16155910 16157239 -101705388 - pTR5 LTR ERV1 0 2438 1352 2030 95 3 14 chr9 16157249 16157533 -101705094 + AluSp SINE Alu 31 311 -2 504 162 121 10 chr9 16157538 16157637 -101704990 + MER2 DNA MER2_type 235 344 -1 2321 70 3 0 chr9 16157768 16158066 -101704561 - L1PA8 LINE L1 -77 6095 5797 1299 88 0 52 chr9 16158166 16158358 -101704269 - AluSq SINE Alu -131 182 1 2442 86 0 0 chr9 16159044 16159345 -101703282 + AluSp SINE Alu 1 301 -12 260 287 201 10 chr9 16159793 16160010 -101702617 + MIR SINE MIR 2 257 -5 907 178 0 38 chr9 16161542 16161632 -101700995 - AluJb SINE Alu -9 303 222 2327 128 21 39 chr9 16161632 16162014 -101700613 + THE1C LTR MaLR 1 375 0 907 178 0 38 chr9 16162014 16162108 -101700519 - AluJb SINE Alu -90 222 126 2498 73 3 0 chr9 16162501 16162802 -101699825 + AluY SINE Alu 1 302 -9 1352 74 6 6 chr9 16162920 16163095 -101699532 + AluSq SINE Alu 122 296 -17 592 299 50 84 chr9 16163096 16163500 -101699127 - L2 LINE L2 -616 2698 2309 354 360 13 7 chr9 16164248 16164398 -101698229 - L1MEd LINE L1 -5471 648 498 1284 179 13 0 chr9 16164425 16164660 -101697967 + L1MB7 LINE L1 5591 5828 -356 354 182 0 0 chr9 16164661 16164716 -101697911 + Tigger5 DNA MER2_type 1 55 -2268 * 519 175 48 0 chr9 16164708 16164811 -101697816 + Tigger5 DNA MER2_type 2215 2322 -1 800 231 40 59 chr9 16164840 16165143 -101697484 + L1MB7 LINE L1 5888 6184 0 229 242 161 0 chr9 16165307 16165369 -101697258 + HsTC2 DNA Tc2 1820 1891 -7 318 51 0 0 chr9 16165761 16165800 -101696827 - U2 snRNA snRNA -149 39 1 1838 159 20 0 chr9 16166218 16166514 -101696113 + AluJo SINE Alu 1 302 -10 29 0 0 25 chr9 16167088 16167109 -101695518 + AT_rich Low_complexity Low_complexity 1 22 -17 2312 116 0 0 chr9 16167109 16167420 -101695207 - AluSx SINE Alu -1 311 1 29 0 0 25 chr9 16167420 16167438 -101695189 + AT_rich Low_complexity Low_complexity 22 39 0 216 67 0 0 chr9 16167541 16167571 -101695056 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 844 186 27 22 chr9 16168083 16168266 -101694361 + MLT2B1 LTR ERVL 337 520 0 316 224 318 29 chr9 16168283 16168453 -101694174 - MIR SINE MIR -7 255 37 529 212 19 112 chr9 16169248 16169391 -101693236 + L1MA9 LINE L1 6039 6147 -165 2371 96 0 10 chr9 16169391 16169694 -101692933 + AluSx SINE Alu 1 300 -12 529 212 19 112 chr9 16169694 16169819 -101692808 + L1MA9 LINE L1 6147 6282 -30 3415 163 15 15 chr9 16170636 16171251 -101691376 + L1MC3 LINE L1 7162 7776 -9 26 0 0 0 chr9 16171487 16171513 -101691114 + AT_rich Low_complexity Low_complexity 1 26 0 1369 245 8 45 chr9 16171683 16171819 -101690808 + MLT1A2 LTR MaLR 33 172 -202 2303 65 3 3 chr9 16171819 16172109 -101690518 + AluY SINE Alu 1 290 -21 1369 245 8 45 chr9 16172109 16172327 -101690300 + MLT1A2 LTR MaLR 172 374 0 307 296 117 19 chr9 16172327 16172644 -101689983 + L1ME4a LINE L1 5567 5914 -207 319 281 8 0 chr9 16173501 16173629 -101688998 + (CA)n Simple_repeat Simple_repeat 2 130 0 623 302 116 32 chr9 16173709 16174322 -101688305 + L2 LINE L2 2545 3205 -108 216 0 0 0 chr9 16174386 16174410 -101688217 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 2294 102 0 10 chr9 16174593 16174906 -101687721 + AluSg SINE Alu 1 310 0 2162 130 0 3 chr9 16174908 16175208 -101687419 + AluSx SINE Alu 1 299 -13 183 80 0 0 chr9 16175629 16175654 -101686973 + (A)n Simple_repeat Simple_repeat 1 25 0 552 142 117 92 chr9 16175664 16175784 -101686843 + FLAM_A SINE Alu 10 132 -10 270 263 33 72 chr9 16175928 16176080 -101686547 - MIR SINE MIR -3 259 114 1590 210 41 34 chr9 16176189 16176393 -101686234 + LTR37B LTR ERV1 51 252 -216 2340 130 15 21 chr9 16176393 16176732 -101685895 - MER1B DNA MER1_type 0 337 1 1590 210 41 34 chr9 16176732 16176941 -101685686 + LTR37B LTR ERV1 252 467 -1 205 171 0 57 chr9 16178473 16178543 -101684084 + CT-rich Low_complexity Low_complexity 1 66 0 2325 97 3 0 chr9 16180064 16180362 -101682265 - AluSp SINE Alu -14 299 1 213 299 140 0 chr9 16181385 16181492 -101681135 + MIR SINE MIR 122 243 -19 244 308 216 34 chr9 16181684 16181892 -101680735 + MIR SINE MIR 4 249 -13 2151 89 18 0 chr9 16182168 16182450 -101680177 + AluSp SINE Alu 1 287 -26 260 314 0 23 chr9 16182627 16182713 -101679914 + MIR3 SINE MIR 84 167 -41 22 35 0 0 chr9 16183650 16183679 -101678948 + AT_rich Low_complexity Low_complexity 1 29 0 538 236 61 24 chr9 16183864 16184029 -101678598 - MIR SINE MIR 0 262 92 316 301 62 14 chr9 16184015 16184161 -101678466 + MIR SINE MIR 97 249 -13 * 405 299 37 0 chr9 16184466 16184573 -101678054 + MIR SINE MIR 18 128 -134 734 198 21 109 chr9 16184833 16184905 -101677722 + MER58A DNA MER1_type 3 80 -2340 2347 108 0 6 chr9 16184905 16185219 -101677408 - AluSx SINE Alu 0 312 1 734 198 21 109 chr9 16185219 16185384 -101677243 + MER58A DNA MER1_type 80 219 -5 186 171 0 0 chr9 16186022 16186063 -101676564 + T-rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr9 16186200 16186224 -101676403 + (CAA)n Simple_repeat Simple_repeat 2 25 0 450 277 101 0 chr9 16186230 16186389 -101676238 + MIR SINE MIR 82 256 -6 225 0 0 0 chr9 16186647 16186672 -101675955 + (A)n Simple_repeat Simple_repeat 1 25 0 1935 140 7 7 chr9 16186700 16186992 -101675635 - AluSx SINE Alu -14 298 7 848 223 38 46 chr9 16187627 16187865 -101674762 - MIR SINE MIR 0 262 27 200 346 65 19 chr9 16188373 16188480 -101674147 - MIR SINE MIR -10 252 141 371 323 93 40 chr9 16188666 16188892 -101673735 + L1MB7 LINE L1 4758 4995 -1151 338 276 57 36 chr9 16189019 16189211 -101673416 + L1MB7 LINE L1 5199 5394 -752 353 316 155 20 chr9 16189223 16189527 -101673100 + L1MB7 LINE L1 5439 5783 -2025 25 83 0 0 chr9 16189826 16189886 -101672741 + AT_rich Low_complexity Low_complexity 1 60 0 2523 39 0 26 chr9 16189998 16190307 -101672320 + AluY SINE Alu 1 301 -10 279 136 7 0 chr9 16190359 16190417 -101672210 - L1MC4 LINE L1 0 8042 7936 953 116 22 0 chr9 16190426 16190564 -101672063 + L1MA3 LINE L1 6165 6305 0 2430 51 0 3 chr9 16190591 16190886 -101671741 + AluY SINE Alu 1 294 -17 2157 235 82 50 chr9 16191023 16191932 -101670695 - L1MC4 LINE L1 -141 7901 6963 1973 66 7 26 chr9 16192727 16192999 -101669628 + AluY SINE Alu 45 311 0 4235 150 94 9 chr9 16193205 16193959 -101668668 + LTR1B LTR ERV1 1 818 -8 213 210 258 0 chr9 16194108 16194170 -101668457 - MIR3 SINE MIR -45 163 86 432 200 35 26 chr9 16194466 16194581 -101668046 - MIR SINE MIR -83 179 64 25 0 0 0 chr9 16195117 16195142 -101667485 + AT_rich Low_complexity Low_complexity 1 25 0 507 184 1 13 chr9 16195171 16195279 -101667348 + L1MB7 LINE L1 6018 6125 -55 1358 184 100 139 chr9 16195284 16195967 -101666660 + MER4A LTR ERV1 5 660 -4 2595 122 5 19 chr9 16196193 16196562 -101666065 + THE1B LTR MaLR 1 364 0 426 236 50 28 chr9 16196851 16197004 -101665623 + MIR SINE MIR 20 177 -63 6712 124 88 9 chr9 16197261 16198376 -101664251 + Tigger3b DNA MER2_type 28 1230 -1 400 204 86 95 chr9 16198523 16198686 -101663941 + MER5A DNA MER1_type 22 188 -1 2360 148 21 0 chr9 16198715 16199101 -101663526 + MER57A LTR ERV1 1 394 -9 321 242 242 20 chr9 16199874 16200023 -101662604 - MIR SINE MIR -49 213 32 832 185 74 42 chr9 16200198 16200387 -101662240 - MER58A DNA MER1_type -3 221 27 332 319 108 9 chr9 16200411 16200541 -101662086 + MIR3 SINE MIR 2 141 -95 196 333 113 27 chr9 16200707 16200857 -101661770 - MIR3 SINE MIR -32 176 14 2182 112 0 7 chr9 16201521 16201816 -101660811 - AluSq SINE Alu -20 293 1 869 188 0 107 chr9 16201842 16202039 -101660588 + AluJb SINE Alu 137 312 0 448 270 20 40 chr9 16202307 16202455 -101660172 - MIR3 SINE MIR -18 190 46 181 328 17 35 chr9 16202543 16202601 -101660026 + L2 LINE L2 3083 3139 -133 2756 184 6 24 chr9 16202885 16203369 -101659258 + MLT2B3 LTR ERVL 1 475 -79 2476 135 6 3 chr9 16203369 16203732 -101658895 - THE1B LTR MaLR 0 364 1 412 139 76 0 chr9 16203732 16203808 -101658819 + MLT2B2 LTR ERVL 421 502 -13 504 230 97 118 chr9 16203856 16204195 -101658432 + L2 LINE L2 2904 3235 -37 223 319 80 57 chr9 16205433 16205623 -101657004 + L2 LINE L2 2545 2746 -568 2339 92 3 19 chr9 16205623 16205939 -101656688 + AluSq SINE Alu 1 311 -2 223 319 80 57 chr9 16205939 16206062 -101656565 + L2 LINE L2 2746 2865 -449 388 245 53 0 chr9 16206217 16206311 -101656316 - MER94 DNA DNA -35 99 1 273 322 70 0 chr9 16206371 16206486 -101656141 + L2 LINE L2 3150 3272 0 2195 122 0 3 chr9 16206493 16206804 -101655823 + AluSx SINE Alu 1 310 -2 273 139 0 89 chr9 16206976 16207055 -101655572 - MER106B DNA MER1_type -154 905 834 2123 119 0 10 chr9 16207061 16207355 -101655272 + AluSx SINE Alu 1 291 -21 2132 95 3 10 chr9 16207355 16207660 -101654967 + AluSp SINE Alu 1 303 -10 485 241 38 15 chr9 16207681 16207814 -101654813 + MIR SINE MIR 119 254 -8 317 247 11 65 chr9 16207826 16207919 -101654708 - MIR3 SINE MIR -109 99 12 1098 172 0 0 chr9 16207959 16208122 -101654505 + FAM SINE Alu 1 163 -12 366 312 46 30 chr9 16208247 16208400 -101654227 + MIR SINE MIR 2 158 -58 2218 109 3 0 chr9 16208452 16208746 -101653881 + AluSx SINE Alu 1 295 -17 1130 101 0 0 chr9 16208759 16208928 -101653699 - AluSg/x SINE Alu 0 302 134 1809 202 74 40 chr9 16208931 16209377 -101653250 - MLT2B1 LTR ERVL -59 461 1 2612 221 118 20 chr9 16209378 16210130 -101652497 - L1MEc LINE L1 -5549 847 22 1112 199 118 103 chr9 16210140 16210589 -101652038 + MER34C LTR ERV1 35 495 -90 1729 167 33 3 chr9 16210589 16210889 -101651738 - AluJb SINE Alu -3 309 1 1112 199 118 103 chr9 16210889 16210982 -101651645 + MER34C LTR ERV1 495 585 0 2182 123 3 3 chr9 16211116 16211425 -101651202 - AluSx SINE Alu -1 311 3 317 43 21 0 chr9 16211624 16211671 -101650956 + (TG)n Simple_repeat Simple_repeat 2 49 0 2375 73 13 0 chr9 16211837 16212137 -101650490 - AluSp SINE Alu -9 304 1 1975 184 40 153 chr9 16212310 16213093 -101649534 - LTR8A LTR ERV1 0 727 34 700 159 18 0 chr9 16213105 16213218 -101649409 + FLAM_A SINE Alu 28 142 0 258 193 18 0 chr9 16213218 16213275 -101649352 - HAL1b LINE L1 -46 1302 1245 1555 162 50 46 chr9 16213487 16213541 -101649086 + MSTB LTR MaLR 3 55 -371 1981 116 0 44 chr9 16213541 16213860 -101648767 + AluSp SINE Alu 1 305 -8 1555 162 50 46 chr9 16213860 16214108 -101648519 + MSTB LTR MaLR 55 306 -120 1567 257 123 13 chr9 16214379 16214842 -101647785 + MLT1G1 LTR MaLR 73 586 -9 550 302 117 66 chr9 16214849 16215260 -101647367 + L3 LINE CR1 985 1416 -161 183 156 0 0 chr9 16215716 16215748 -101646879 + A-rich Low_complexity Low_complexity 1 32 0 305 274 39 10 chr9 16215852 16215954 -101646673 + MIR SINE MIR 81 185 -77 249 277 169 0 chr9 16216403 16216486 -101646141 + L2 LINE L2 3161 3257 -15 344 22 0 22 chr9 16216487 16216533 -101646094 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2257 102 0 0 chr9 16218800 16219093 -101643534 + AluSg SINE Alu 1 293 -17 387 196 7 105 chr9 16219135 16219185 -101643442 - L1ME4a LINE L1 -37 6084 6031 2072 89 7 0 chr9 16219185 16219454 -101643173 + AluSp SINE Alu 21 291 -22 387 196 7 105 chr9 16219454 16219556 -101643071 - L1ME4a LINE L1 -90 6031 5947 244 226 71 0 chr9 16219537 16219621 -101643006 - L1MC4 LINE L1 -1339 6703 6614 * 367 289 35 18 chr9 16219793 16219907 -101642720 - L2 LINE L2 -35 3237 3122 2255 92 0 3 chr9 16220251 16220544 -101642083 + AluY SINE Alu 1 292 -19 1023 172 42 9 chr9 16220544 16220759 -101641868 + L1MC3 LINE L1 7564 7785 0 2139 201 53 25 chr9 16220997 16221485 -101641142 + MLT1D LTR MaLR 1 502 -3 363 23 0 0 chr9 16222713 16222757 -101639870 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 82 0 0 chr9 16223010 16223059 -101639568 + AT_rich Low_complexity Low_complexity 1 49 0 1757 139 45 137 chr9 16223893 16224295 -101638332 + MLT1A1 LTR MaLR 1 365 0 332 365 42 14 chr9 16224312 16224526 -101638101 - L2 LINE L2 0 3313 3094 392 287 67 26 chr9 16224679 16224874 -101637753 - L2 LINE L2 -424 2890 2688 363 207 189 24 chr9 16224876 16225045 -101637582 + L1MC5 LINE L1 7561 7757 -204 * 588 246 54 38 chr9 16225043 16225341 -101637286 + L1MC5 LINE L1 7692 7925 -36 1770 170 10 3 chr9 16225341 16225630 -101636997 - AluJb SINE Alu -20 292 2 2500 94 12 6 chr9 16225733 16226075 -101636552 - MER4E LTR ERV1 -435 344 1 537 126 0 32 chr9 16226385 16226480 -101636147 + L1PA13 LINE L1 6058 6149 -14 2562 123 27 57 chr9 16226499 16226730 -101635897 + MER4E LTR ERV1 28 264 -502 2130 88 50 0 chr9 16226730 16227013 -101635614 - AluSp SINE Alu -16 297 1 2562 123 27 57 chr9 16227013 16227333 -101635294 + MER4E LTR ERV1 264 741 -25 2213 117 0 0 chr9 16227437 16227735 -101634892 + AluSx SINE Alu 1 298 -14 761 197 31 105 chr9 16227735 16228029 -101634598 - LTR8 LTR ERV1 -174 517 246 1814 165 29 0 chr9 16228151 16228423 -101634204 - AluJo SINE Alu -32 280 1 247 262 8 57 chr9 16228556 16228678 -101633949 - L2 LINE L2 -76 3237 3122 528 329 116 18 chr9 16228797 16229186 -101633441 - L2 LINE L2 -338 2976 2550 198 0 0 0 chr9 16229194 16229216 -101633411 + (GGGAGA)n Simple_repeat Simple_repeat 1 22 0 991 210 42 38 chr9 16229264 16229526 -101633101 + L1MD2 LINE L1 3763 4025 -2121 782 188 182 11 chr9 16229529 16229710 -101632917 + AluSc SINE Alu 87 298 -11 3580 208 63 98 chr9 16229711 16229960 -101632667 + L1MD2 LINE L1 4018 4274 -2085 2349 80 3 6 chr9 16229960 16230271 -101632356 + AluY SINE Alu 1 310 -1 3580 208 63 98 chr9 16230271 16230448 -101632179 + L1MD2 LINE L1 4274 4456 -1903 2135 99 3 10 chr9 16230448 16230752 -101631875 + AluY SINE Alu 1 302 -9 3580 208 63 98 chr9 16230752 16231472 -101631155 + L1MD2 LINE L1 4456 5200 -1159 2033 118 11 0 chr9 16231472 16231779 -101630848 + AluSx SINE Alu 1 310 0 3580 208 63 98 chr9 16231779 16232654 -101629973 + L1MD2 LINE L1 5200 5947 -412 225 269 51 26 chr9 16233209 16233287 -101629340 - L2 LINE L2 -47 3225 3146 189 214 0 0 chr9 16233826 16233868 -101628759 + CT-rich Low_complexity Low_complexity 3 44 0 1650 160 0 35 chr9 16233870 16234158 -101628469 - AluJb SINE Alu -34 278 1 225 114 0 0 chr9 16234193 16234228 -101628399 + HSMAR1 DNA Mariner 1253 1287 0 782 316 35 52 chr9 16234464 16234945 -101627682 + MLT1K LTR MaLR 1 473 -3 310 205 168 0 chr9 16235324 16235409 -101627218 - MLT1I LTR MaLR -299 110 40 2278 114 0 3 chr9 16235520 16235828 -101626799 + AluSg SINE Alu 1 307 -3 278 303 206 12 chr9 16235852 16236017 -101626610 - MIR SINE MIR -10 252 56 238 328 63 16 chr9 16236286 16236475 -101626152 - L2 LINE L2 -975 2339 2142 2069 82 0 11 chr9 16236636 16236906 -101625721 - AluSx SINE Alu -7 305 39 211 338 81 0 chr9 16237319 16237393 -101625234 + L2 LINE L2 3020 3099 -173 237 284 80 0 chr9 16237871 16237959 -101624668 + L1ME LINE L1 5520 5614 -507 375 244 74 30 chr9 16237962 16238097 -101624530 - MLT1J LTR MaLR 0 511 371 679 278 85 14 chr9 16238193 16238405 -101624222 - MLT1J LTR MaLR -272 239 13 23 0 0 29 chr9 16238477 16238489 -101624138 + AT_rich Low_complexity Low_complexity 1 12 -21 2103 108 0 29 chr9 16238489 16238803 -101623824 - AluSx SINE Alu -6 306 2 23 0 0 29 chr9 16238803 16238824 -101623803 + AT_rich Low_complexity Low_complexity 12 33 0 1851 167 7 7 chr9 16238864 16239163 -101623464 - AluJb SINE Alu -13 299 1 2241 109 3 0 chr9 16239321 16239615 -101623012 - AluSx SINE Alu -17 295 1 326 311 44 30 chr9 16239667 16239802 -101622825 - MIR SINE MIR -104 158 22 1037 172 0 0 chr9 16239945 16240108 -101622519 - FAM SINE Alu -12 163 1 284 247 11 65 chr9 16240148 16240241 -101622386 + MIR3 SINE MIR 12 99 -109 445 241 38 15 chr9 16240253 16240386 -101622241 - MIR SINE MIR -8 254 119 2324 106 3 0 chr9 16240407 16240709 -101621918 - AluSq SINE Alu -10 303 1 210 352 0 0 chr9 16240728 16240799 -101621828 + MIR SINE MIR 145 215 -47 423 325 33 7 chr9 16241214 16241365 -101621262 - MER5B DNA MER1_type -12 166 12 2229 102 0 0 chr9 16241697 16242019 -101620608 + AluSq SINE Alu 1 322 0 351 320 49 0 chr9 16242046 16242168 -101620459 - L2 LINE L2 -4 3309 3182 2436 46 0 7 chr9 16242688 16243002 -101619625 - AluY SINE Alu 0 312 1 701 211 7 0 chr9 16243281 16243428 -101619199 - L1PB4 LINE L1 -7 6149 6002 233 287 64 0 chr9 16243778 16243872 -101618755 - L2 LINE L2 -905 2409 2310 1613 183 64 117 chr9 16243872 16244087 -101618540 + LTR8 LTR ERV1 1 226 -465 2415 146 72 66 chr9 16244087 16244574 -101618053 + LTR2B LTR ERV1 1 490 0 1613 183 64 117 chr9 16244574 16244614 -101618013 + LTR8 LTR ERV1 226 267 -424 2216 101 3 0 chr9 16244614 16244911 -101617716 + AluSg SINE Alu 1 298 -12 1613 183 64 117 chr9 16244911 16245200 -101617427 + LTR8 LTR ERV1 267 517 -174 2230 117 0 0 chr9 16245200 16245498 -101617129 - AluSx SINE Alu -14 298 1 4964 115 23 16 chr9 16245602 16246351 -101616276 - MER4E LTR ERV1 -25 754 1 511 126 0 32 chr9 16246661 16246756 -101615871 + L1PA13 LINE L1 6058 6149 -14 2912 121 17 46 chr9 16246775 16247006 -101615621 + MER4E LTR ERV1 28 264 -502 2117 92 50 0 chr9 16247006 16247288 -101615339 - AluSp SINE Alu -17 296 1 2912 121 17 46 chr9 16247288 16247632 -101614995 + MER4E LTR ERV1 264 766 0 189 107 0 0 chr9 16247655 16247683 -101614944 + (A)n Simple_repeat Simple_repeat 1 28 0 846 192 28 11 chr9 16248079 16248256 -101614371 - FRAM SINE Alu 0 176 1 826 153 15 0 chr9 16249226 16249357 -101613270 - FRAM SINE Alu -12 164 32 1352 183 0 56 chr9 16249393 16249661 -101612966 - AluJo SINE Alu -49 263 11 895 226 31 44 chr9 16249700 16249926 -101612701 - MER87 LTR ERV1 -318 223 1 301 250 67 10 chr9 16250012 16250116 -101612511 - L1M4 LINE L1 -1308 4838 4729 1535 92 15 0 chr9 16250379 16250574 -101612053 - AluSg SINE Alu -6 306 109 3908 86 2 6 chr9 16250574 16251087 -101611540 - MER9 LTR ERVK 0 511 1 899 89 0 0 chr9 16251087 16251199 -101611428 - AluSg SINE Alu -198 112 1 1213 296 125 8 chr9 16251210 16251826 -101610801 - L1MC4a LINE L1 -1633 6175 5488 3100 99 24 79 chr9 16251829 16252362 -101610265 + MER39B LTR ERV1 1 504 -149 749 90 0 0 chr9 16253216 16253316 -101609311 - AluY SINE Alu -15 296 197 561 133 153 0 chr9 16253321 16253419 -101609208 + MER39B LTR ERV1 539 651 -2 816 304 27 14 chr9 16253700 16254065 -101608562 - L1MC4a LINE L1 -1898 4248 3879 942 137 0 20 chr9 16254188 16254334 -101608293 - AluSg/x SINE Alu -16 296 154 333 0 0 0 chr9 16254355 16254392 -101608235 + (TA)n Simple_repeat Simple_repeat 1 37 0 2174 95 7 0 chr9 16254550 16254834 -101607793 - AluSp SINE Alu -27 286 1 257 227 91 11 chr9 16255055 16255143 -101607484 - MIR SINE MIR -82 180 86 1020 183 6 0 chr9 16255222 16255391 -101607236 - AluJo/FRAM SINE Alu -9 303 134 2216 106 3 0 chr9 16255391 16255692 -101606935 - AluSg SINE Alu -8 302 1 1042 165 102 82 chr9 16255693 16255732 -101606895 - LTR8 LTR ERV1 -431 260 223 2415 146 72 66 chr9 16255732 16256219 -101606408 - LTR2B LTR ERV1 0 490 1 1042 165 102 82 chr9 16256219 16256434 -101606193 - LTR8 LTR ERV1 -468 223 1 233 287 64 0 chr9 16256434 16256528 -101606099 + L2 LINE L2 2310 2409 -905 701 211 7 0 chr9 16256878 16257025 -101605602 + L1PB4 LINE L1 6002 6149 -7 2423 42 0 11 chr9 16257304 16257619 -101605008 + AluY SINE Alu 1 312 0 351 320 49 0 chr9 16258139 16258261 -101604366 + L2 LINE L2 3182 3309 -4 2193 102 0 3 chr9 16258288 16258603 -101604024 - AluSq SINE Alu 0 314 1 423 325 33 7 chr9 16258935 16259086 -101603541 + MER5B DNA MER1_type 12 166 -12 210 352 0 0 chr9 16259501 16259572 -101603055 - MIR SINE MIR -47 215 145 2165 120 3 7 chr9 16259591 16259892 -101602735 + AluSq SINE Alu 1 300 -13 230 157 0 57 chr9 16261415 16261485 -101601142 + GA-rich Low_complexity Low_complexity 1 66 0 1565 210 41 34 chr9 16263017 16263226 -101599401 - LTR37B LTR ERV1 -1 467 261 2207 130 15 21 chr9 16263226 16263565 -101599062 + MER1B DNA MER1_type 1 337 0 1565 210 41 34 chr9 16263565 16263769 -101598858 - LTR37B LTR ERV1 -207 261 51 234 257 34 74 chr9 16263882 16264030 -101598597 + MIR SINE MIR 118 259 -3 504 168 147 0 chr9 16264198 16264293 -101598334 - FLAM_A SINE Alu -24 118 10 183 80 0 0 chr9 16264303 16264328 -101598299 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr9 16265659 16265689 -101596938 + AT_rich Low_complexity Low_complexity 1 30 0 1759 145 0 21 chr9 16265689 16265978 -101596649 - AluSg SINE Alu -25 285 3 603 140 0 0 chr9 16266049 16266142 -101596485 + AluSp/q SINE Alu 202 294 -19 564 197 39 39 chr9 16266143 16266270 -101596357 - AluJo/FLAM SINE Alu -175 127 1 496 185 34 8 chr9 16266284 16266403 -101596224 - L1MB7 LINE L1 0 6184 6063 753 260 56 20 chr9 16266595 16266845 -101595782 + MIR SINE MIR 1 259 -3 834 220 141 4 chr9 16266886 16267127 -101595500 + L1ME1 LINE L1 5881 6154 -12 521 241 9 0 chr9 16267210 16267322 -101595305 - L2 LINE L2 -4 3309 3197 21 36 0 0 chr9 16268248 16268276 -101594351 + GC_rich Low_complexity Low_complexity 1 28 0 351 284 103 9 chr9 16269364 16269480 -101593147 + MER94 DNA DNA 8 134 0 260 158 0 18 chr9 16269585 16269642 -101592985 + L2 LINE L2 3257 3312 -1 181 224 163 0 chr9 16269706 16269755 -101592872 - L2 LINE L2 -1 3271 3215 344 237 21 21 chr9 16270305 16270402 -101592225 - L2 LINE L2 -5 3308 3212 261 238 57 57 chr9 16270406 16270528 -101592099 + MIR3 SINE MIR 82 203 -5 2124 204 47 36 chr9 16270772 16271275 -101591352 + MER106B DNA MER1_type 35 546 -513 2280 93 3 10 chr9 16271275 16271576 -101591051 + AluSq SINE Alu 1 299 -14 2124 204 47 36 chr9 16271576 16271600 -101591027 + MER106B DNA MER1_type 546 568 -491 1264 145 28 33 chr9 16271617 16271831 -101590796 + AluJo SINE Alu 86 298 -14 846 115 96 46 chr9 16271835 16272032 -101590595 + MER106B DNA MER1_type 590 800 -259 2396 69 0 3 chr9 16272032 16272322 -101590305 - AluSc SINE Alu -20 289 1 846 115 96 46 chr9 16272322 16272342 -101590285 + MER106B DNA MER1_type 800 818 -241 2030 136 3 17 chr9 16272345 16272647 -101589980 - AluSq SINE Alu -15 298 1 235 156 0 22 chr9 16272649 16272694 -101589933 + MER2 DNA MER2_type 196 239 -106 724 81 198 0 chr9 16272727 16272838 -101589789 - LTR12 LTR ERV1 0 714 582 4395 127 57 73 chr9 16272838 16273674 -101588953 - LTR12 LTR ERV1 0 826 4 2024 99 3 14 chr9 16273679 16273963 -101588664 + AluSp SINE Alu 31 311 -2 501 162 121 10 chr9 16273968 16274067 -101588560 + MER2 DNA MER2_type 235 344 -1 841 106 16 0 chr9 16274198 16274321 -101588306 - L1PA8 LINE L1 -77 6095 5971 690 164 0 0 chr9 16274421 16274525 -101588102 - MER1B DNA MER1_type -193 104 1 * 868 187 56 14 chr9 16274525 16274734 -101587893 + LTR37B LTR ERV1 250 467 -1 230 157 0 57 chr9 16276266 16276336 -101586291 + CT-rich Low_complexity Low_complexity 1 66 0 2345 97 3 0 chr9 16277857 16278155 -101584472 - AluSp SINE Alu -14 299 1 185 304 128 0 chr9 16279183 16279285 -101583342 + MIR SINE MIR 129 243 -19 203 303 144 53 chr9 16279477 16279609 -101583018 + MIR SINE MIR 4 147 -115 2176 89 18 0 chr9 16279961 16280243 -101582384 + AluSp SINE Alu 1 287 -26 237 314 0 23 chr9 16280420 16280506 -101582121 + MIR3 SINE MIR 84 167 -41 22 35 0 0 chr9 16281443 16281472 -101581155 + AT_rich Low_complexity Low_complexity 1 29 0 491 236 61 24 chr9 16281657 16281822 -101580805 - MIR SINE MIR 0 262 92 278 301 62 14 chr9 16281808 16281954 -101580673 + MIR SINE MIR 97 249 -13 * 372 299 37 0 chr9 16282259 16282366 -101580261 + MIR SINE MIR 18 128 -134 728 198 21 109 chr9 16282626 16282698 -101579929 + MER58A DNA MER1_type 3 80 -2340 2368 108 0 6 chr9 16282698 16283012 -101579615 - AluSx SINE Alu 0 312 1 728 198 21 109 chr9 16283012 16283177 -101579450 + MER58A DNA MER1_type 80 219 -5 186 171 0 0 chr9 16283815 16283856 -101578771 + T-rich Low_complexity Low_complexity 1 41 0 183 42 0 0 chr9 16283993 16284017 -101578610 + (CAA)n Simple_repeat Simple_repeat 2 25 0 404 277 101 0 chr9 16284023 16284182 -101578445 + MIR SINE MIR 82 256 -6 225 0 0 0 chr9 16284440 16284465 -101578162 + (A)n Simple_repeat Simple_repeat 1 25 0 1924 150 3 7 chr9 16284493 16284786 -101577841 - AluSx SINE Alu -14 298 7 777 223 38 46 chr9 16285423 16285661 -101576966 - MIR SINE MIR 0 262 27 419 305 200 31 chr9 16286459 16287004 -101575623 + L1MC/D LINE L1 4758 5394 -752 283 322 155 20 chr9 16287016 16287320 -101575307 + L1MC/D LINE L1 5439 5783 -2025 25 83 0 0 chr9 16287619 16287679 -101574948 + AT_rich Low_complexity Low_complexity 1 60 0 2016 137 0 0 chr9 16287792 16288076 -101574551 + AluSg SINE Alu 2 285 -25 23 33 0 0 chr9 16288076 16288106 -101574521 + AT_rich Low_complexity Low_complexity 1 30 0 442 255 126 97 chr9 16289156 16289434 -101573193 + L2 LINE L2 3028 3313 0 258 85 0 0 chr9 16289830 16289877 -101572750 - LTR66 LTR ERVL -170 440 394 224 212 15 0 chr9 16289885 16289951 -101572676 + (TA)n Simple_repeat Simple_repeat 2 68 0 627 192 31 31 chr9 16290120 16290250 -101572377 + FLAM_A SINE Alu 3 132 -1 279 160 40 0 chr9 16290250 16290325 -101572302 + GA-rich Low_complexity Low_complexity 1 78 0 418 155 0 28 chr9 16290432 16290503 -101572124 + MLT1J LTR MaLR 100 168 -343 8133 113 14 10 chr9 16290570 16291108 -101571519 + Tigger1 DNA MER2_type 616 1150 -1268 2367 97 0 0 chr9 16291108 16291407 -101571220 + AluSc SINE Alu 1 299 -10 8133 113 14 10 chr9 16291407 16292055 -101570572 + Tigger1 DNA MER2_type 1150 1807 -611 1351 213 17 35 chr9 16292056 16292335 -101570292 - AluJo SINE Alu 0 332 57 2094 141 34 52 chr9 16292335 16292717 -101569910 - THE1C LTR MaLR 0 375 1 1351 213 17 35 chr9 16292717 16292774 -101569853 - AluJo SINE Alu -275 57 1 3539 173 11 11 chr9 16292775 16293019 -101569608 + Tigger1 DNA MER2_type 1798 2041 -377 2273 99 0 23 chr9 16293019 16293323 -101569304 + AluSq SINE Alu 3 299 -14 3539 173 11 11 chr9 16293323 16293698 -101568929 + Tigger1 DNA MER2_type 2040 2417 -1 1071 166 0 11 chr9 16294079 16294260 -101568367 + FRAM SINE Alu 1 175 -1 2502 56 0 16 chr9 16294322 16294627 -101568000 + AluY SINE Alu 2 301 -10 407 245 108 0 chr9 16294627 16294729 -101567898 - MER5A DNA MER1_type 0 189 77 224 196 84 103 chr9 16294651 16294732 -101567895 + MER5A DNA MER1_type 45 125 -64 * 204 40 0 0 chr9 16294732 16294757 -101567870 + (CTG)n Simple_repeat Simple_repeat 2 26 0 224 196 84 103 chr9 16294757 16294782 -101567845 + MER5A DNA MER1_type 125 149 -40 1988 185 30 22 chr9 16294901 16295263 -101567364 + MLT1A1 LTR MaLR 1 365 0 1690 81 31 0 chr9 16295344 16295567 -101567060 - LTR8 LTR ERV1 -356 335 106 308 119 0 0 chr9 16295569 16295611 -101567016 - Alu SINE Alu -258 44 3 1804 147 3 20 chr9 16296097 16296327 -101566300 - AluJo SINE Alu -12 300 75 5257 82 14 54 chr9 16296327 16297047 -101565580 - LTR8 LTR ERV1 0 691 1 1804 147 3 20 chr9 16297047 16297109 -101565518 - AluJo SINE Alu -237 75 13 1918 112 56 0 chr9 16297140 16297434 -101565193 - AluSx SINE Alu 0 311 3 2360 83 7 0 chr9 16297494 16297794 -101564833 - AluSp SINE Alu -11 302 1 276 227 91 11 chr9 16298015 16298103 -101564524 - MIR SINE MIR -82 180 86 1681 168 3 48 chr9 16298182 16298351 -101564276 - AluJo SINE Alu -9 303 153 2197 122 0 3 chr9 16298351 16298654 -101563973 - AluSg SINE Alu -8 302 1 1681 168 3 48 chr9 16298654 16298799 -101563828 - AluJo SINE Alu -159 153 3 207 0 0 0 chr9 16298807 16298830 -101563797 + (T)n Simple_repeat Simple_repeat 1 23 0 2220 113 7 0 chr9 16298961 16299261 -101563366 - AluSp SINE Alu -11 302 1 1157 213 38 33 chr9 16299471 16299794 -101562833 + L1MB5 LINE L1 3020 3347 -2799 2332 76 0 23 chr9 16299794 16300095 -101562532 + AluY SINE Alu 1 294 -17 1157 213 38 33 chr9 16300095 16300138 -101562489 + L1MB5 LINE L1 3347 3388 -2758 1377 169 0 4 chr9 16300147 16300389 -101562238 + L1MB5 LINE L1 4447 4687 -1459 2493 105 11 29 chr9 16300390 16300550 -101562077 + THE1C LTR MaLR 1 162 -213 1891 114 0 120 chr9 16300550 16300884 -101561743 - AluSg SINE Alu -5 295 2 2493 105 11 29 chr9 16300884 16301105 -101561522 + THE1C LTR MaLR 162 375 0 11301 111 37 5 chr9 16301105 16302636 -101559991 + THE1C-int LTR MaLR 1 1580 0 2645 106 21 24 chr9 16302636 16303012 -101559615 + THE1C LTR MaLR 1 375 0 2246 202 22 27 chr9 16303012 16303480 -101559147 + L1MB5 LINE L1 4684 5150 -996 1524 175 42 52 chr9 16303480 16303622 -101559005 + AluJo SINE Alu 3 145 -167 2249 110 0 7 chr9 16303622 16303921 -101558706 + AluY SINE Alu 1 297 -14 1524 175 42 52 chr9 16303921 16304086 -101558541 + AluJo SINE Alu 145 307 -5 2246 202 22 27 chr9 16304086 16304171 -101558456 + L1MB5 LINE L1 5150 5234 -912 718 221 0 7 chr9 16304175 16304311 -101558316 + FLAM_A SINE Alu 6 140 -2 560 231 52 17 chr9 16304318 16304491 -101558136 + L1MB5 LINE L1 5221 5399 -747 * 1919 133 10 17 chr9 16304473 16304774 -101557853 + L1PA15 LINE L1 5811 6109 -56 2279 122 8 62 chr9 16304774 16304843 -101557784 - THE1B LTR MaLR 0 364 293 8355 13 5 0 chr9 16304843 16305900 -101556727 + L1PA2 LINE L1 5095 6155 0 2279 122 8 62 chr9 16305900 16306215 -101556412 - THE1B LTR MaLR -71 293 1 3490 61 2 37 chr9 16306215 16306399 -101556228 - THE1B-int LTR MaLR 0 1580 1391 2218 116 3 0 chr9 16306399 16306700 -101555927 + AluSp SINE Alu 5 306 -7 3490 61 2 37 chr9 16306700 16306975 -101555652 - THE1B-int LTR MaLR -189 1391 1137 4029 154 42 27 chr9 16307012 16307790 -101554837 + L1MB5 LINE L1 5385 6174 0 2296 84 3 0 chr9 16307906 16308204 -101554423 + AluSp SINE Alu 1 299 -14 637 243 6 18 chr9 16308387 16308556 -101554071 - L2 LINE L2 -34 3279 3113 391 222 21 69 chr9 16308588 16308679 -101553948 + L1ME LINE L1 10 94 -5976 2270 46 3 14 chr9 16308679 16309000 -101553627 + AluY SINE Alu 1 318 0 391 222 21 69 chr9 16309000 16309051 -101553576 + L1ME LINE L1 94 146 -5924 718 241 45 78 chr9 16309084 16309416 -101553211 + L1ME LINE L1 266 586 -5484 645 189 116 79 chr9 16309559 16309749 -101552878 - MER34B LTR ERV1 -358 207 11 1587 179 29 4 chr9 16309879 16310177 -101552450 - AluJo SINE Alu 0 305 1 723 251 82 82 chr9 16310198 16310394 -101552233 + L1MC4a LINE L1 5556 5751 -2057 1878 167 3 7 chr9 16310394 16310694 -101551933 + AluJb SINE Alu 1 299 -13 723 251 82 82 chr9 16310694 16310755 -101551872 + L1MC4a LINE L1 5751 5811 -1997 2089 108 0 29 chr9 16310755 16311070 -101551557 + AluSx SINE Alu 2 307 -5 723 251 82 82 chr9 16311070 16311154 -101551473 + L1MC4a LINE L1 5810 5898 -1910 685 278 85 14 chr9 16311154 16311366 -101551261 + MLT1J LTR MaLR 13 239 -272 381 244 74 30 chr9 16311462 16311597 -101551030 + MLT1J LTR MaLR 371 511 0 931 298 20 0 chr9 16311638 16311930 -101550697 - L1MC4a LINE L1 -1919 5889 5592 306 0 0 0 chr9 16311934 16311968 -101550659 + (TG)n Simple_repeat Simple_repeat 2 35 0 300 330 47 0 chr9 16312161 16312267 -101550360 + L2 LINE L2 3181 3291 -22 208 229 21 0 chr9 16312267 16312315 -101550312 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2195 120 0 0 chr9 16313499 16313798 -101548829 - AluSx SINE Alu -13 299 1 397 119 0 15 chr9 16313808 16313875 -101548752 - L1MA10 LINE L1 -13 6321 6256 2042 120 7 26 chr9 16313975 16314283 -101548344 - THE1B LTR MaLR -62 302 1 3444 65 2 37 chr9 16314283 16314467 -101548160 - THE1B-int LTR MaLR 0 1580 1391 2218 116 3 0 chr9 16314467 16314768 -101547859 + AluSp SINE Alu 5 306 -7 3444 65 2 37 chr9 16314768 16315043 -101547584 - THE1B-int LTR MaLR -189 1391 1137 4033 154 42 27 chr9 16315080 16315858 -101546769 + L1MB5 LINE L1 5385 6174 0 2270 87 3 0 chr9 16315973 16316271 -101546356 + AluSp SINE Alu 1 299 -14 579 253 5 43 chr9 16316454 16316640 -101545987 - L2 LINE L2 -34 3279 3101 387 220 21 64 chr9 16316655 16316743 -101545884 + L1ME LINE L1 12 94 -5976 2255 42 3 18 chr9 16316743 16317065 -101545562 + AluY SINE Alu 1 318 0 387 220 21 64 chr9 16317065 16317116 -101545511 + L1ME LINE L1 94 146 -5924 718 241 45 78 chr9 16317149 16317481 -101545146 + L1ME LINE L1 266 586 -5484 645 189 116 79 chr9 16317624 16317814 -101544813 - MER34B LTR ERV1 -358 207 11 1589 179 29 4 chr9 16317939 16318244 -101544383 - AluJo SINE Alu 0 312 1 625 264 97 31 chr9 16318265 16318461 -101544166 + L1MC4a LINE L1 5556 5774 -2034 1878 167 3 7 chr9 16318461 16318761 -101543866 + AluJb SINE Alu 1 299 -13 625 264 97 31 chr9 16318761 16318822 -101543805 + L1MC4a LINE L1 5774 5830 -1978 2089 108 0 29 chr9 16318822 16319137 -101543490 + AluSx SINE Alu 2 307 -5 685 278 85 14 chr9 16319221 16319433 -101543194 + MLT1J LTR MaLR 13 239 -272 381 244 74 30 chr9 16319529 16319664 -101542963 + MLT1J LTR MaLR 371 511 0 244 284 80 0 chr9 16319667 16319755 -101542872 - L1ME LINE L1 -507 5614 5520 211 338 81 0 chr9 16320233 16320307 -101542320 - L2 LINE L2 -173 3099 3020 2104 83 0 11 chr9 16320720 16320996 -101541631 + AluSx SINE Alu 39 311 -1 21 0 0 0 chr9 16320996 16321017 -101541610 + AT_rich Low_complexity Low_complexity 1 21 0 1844 156 20 0 chr9 16321591 16321886 -101540741 - AluJo SINE Alu -11 301 1 318 51 0 0 chr9 16322304 16322343 -101540284 + U2 snRNA snRNA 1 39 -149 229 242 161 0 chr9 16322735 16322797 -101539830 - HsTC2 DNA Tc2 -4 1894 1823 773 230 40 62 chr9 16322962 16323266 -101539361 - L1MB7 LINE L1 0 6184 5888 519 175 48 0 chr9 16323295 16323398 -101539229 - Tigger5 DNA MER2_type -1 2322 2215 363 182 0 0 chr9 16323390 16323445 -101539182 - Tigger5 DNA MER2_type -2268 55 1 * 1261 183 13 0 chr9 16323446 16323681 -101538946 - L1MB7 LINE L1 -356 5828 5591 354 360 13 7 chr9 16323708 16323858 -101538769 + L1MEd LINE L1 498 648 -5471 592 299 50 84 chr9 16324606 16325010 -101537617 + L2 LINE L2 2309 2698 -616 1523 68 5 5 chr9 16325011 16325203 -101537424 - AluSq SINE Alu -17 296 105 764 98 9 0 chr9 16325309 16325421 -101537206 + L1PBa LINE L1 2788 2900 -3963 1983 107 0 0 chr9 16325423 16325675 -101536952 + AluSc SINE Alu 1 252 -57 1793 133 0 4 chr9 16325676 16325924 -101536703 + AluSq SINE Alu 1 247 -66 1500 165 84 130 chr9 16326423 16326909 -101535718 + MER4C LTR ERV1 1 464 -1 183 266 16 31 chr9 16326943 16327007 -101535620 - L2 LINE L2 -610 2704 2642 335 221 66 49 chr9 16327120 16327242 -101535385 + L1ME4a LINE L1 5972 6095 -26 1630 77 0 0 chr9 16327543 16327737 -101534890 + AluSc SINE Alu 13 206 -103 1777 166 118 46 chr9 16327750 16327890 -101534737 - LTR10A LTR ERV1 -61 548 419 2467 70 0 3 chr9 16327890 16328192 -101534435 - AluY SINE Alu -10 301 1 1777 166 118 46 chr9 16328192 16328517 -101534110 - LTR10A LTR ERV1 -190 419 2 498 141 0 13 chr9 16328517 16328595 -101534032 + AluSg/x SINE Alu 201 277 -32 1217 181 104 102 chr9 16328600 16329041 -101533586 - LTR7 LTR ERV1 -8 442 1 196 67 0 67 chr9 16329051 16329096 -101533531 + (TAAAAA)n Simple_repeat Simple_repeat 2 43 0 335 165 127 13 chr9 16329373 16329452 -101533175 + MIR SINE MIR 105 192 -70 2385 95 0 3 chr9 16329765 16330070 -101532557 - AluSx SINE Alu -8 304 1 372 156 0 16 chr9 16330380 16330444 -101532183 - MER116 DNA Mariner -11 69 7 276 100 0 0 chr9 16330452 16330492 -101532135 - MIR SINE MIR -106 156 117 830 190 91 11 chr9 16330742 16330969 -101531658 + AluJo SINE Alu 5 296 -16 260 256 0 77 chr9 16331331 16331362 -101531265 - L2 LINE L2 -1 3271 3239 2062 161 125 10 chr9 16331362 16331778 -101530849 + MLT2C2 LTR ERVL 1 464 0 260 256 0 77 chr9 16331778 16331824 -101530803 - L2 LINE L2 -33 3239 3200 1745 147 0 43 chr9 16331827 16332127 -101530500 + AluJo SINE Alu 1 287 -25 251 364 74 0 chr9 16332695 16332816 -101529811 - L2 LINE L2 -6 3266 3137 389 304 113 13 chr9 16333164 16333178 -101529449 + L1ME LINE L1 5457 5468 -702 2337 99 0 3 chr9 16333178 16333481 -101529146 + AluSq SINE Alu 1 302 -11 389 304 113 13 chr9 16333481 16333707 -101528920 + L1ME LINE L1 5468 5717 -453 725 164 0 57 chr9 16334159 16334299 -101528328 + FLAM_C SINE Alu 11 142 -1 342 148 49 0 chr9 16334305 16334366 -101528261 + L1 LINE L1 2687 2750 -3396 472 184 29 52 chr9 16334372 16334508 -101528119 + L1M1 LINE L1 3296 3428 -4137 507 297 70 84 chr9 16334536 16334744 -101527883 - LTR67 LTR ERVL -19 538 328 1757 160 0 4 chr9 16334744 16335019 -101527608 + AluSx SINE Alu 35 308 -4 507 297 70 84 chr9 16335019 16335355 -101527272 - LTR67 LTR ERVL -229 328 2 2554 112 54 56 chr9 16335513 16335723 -101526904 + MSTA LTR MaLR 1 210 -218 1939 62 0 21 chr9 16335723 16335965 -101526662 + AluY SINE Alu 1 237 -74 2554 112 54 56 chr9 16335965 16336183 -101526444 + MSTA LTR MaLR 210 428 0 3343 172 14 14 chr9 16337225 16337848 -101524779 + L1MC3 LINE L1 7154 7776 -9 26 0 0 0 chr9 16338084 16338110 -101524517 + AT_rich Low_complexity Low_complexity 1 26 0 633 248 0 0 chr9 16338280 16338409 -101524218 + MLT1A2 LTR MaLR 33 161 -213 2411 63 3 3 chr9 16338416 16338718 -101523909 + AluY SINE Alu 1 302 -9 279 136 7 0 chr9 16338770 16338828 -101523799 - L1MC4 LINE L1 0 8042 7936 953 116 22 0 chr9 16338837 16338975 -101523652 + L1MA3 LINE L1 6165 6305 0 2444 48 0 3 chr9 16339002 16339297 -101523330 + AluY SINE Alu 1 294 -17 1757 243 79 46 chr9 16339434 16340343 -101522284 - L1MC4 LINE L1 -141 7901 6963 1977 67 7 19 chr9 16341138 16341408 -101521219 + AluY SINE Alu 45 311 0 214 332 70 11 chr9 16341716 16341903 -101520724 + L2 LINE L2 2142 2339 -975 306 321 153 21 chr9 16342147 16342337 -101520290 + MIR SINE MIR 38 252 -10 2268 117 0 3 chr9 16342361 16342669 -101519958 - AluSg SINE Alu -3 307 1 282 205 168 0 chr9 16342780 16342865 -101519762 + MLT1I LTR MaLR 40 166 -299 614 312 35 52 chr9 16343244 16343725 -101518902 - MLT1K LTR MaLR -3 473 1 1655 160 0 35 chr9 16344031 16344319 -101518308 + AluJb SINE Alu 1 278 -34 189 214 0 0 chr9 16344321 16344363 -101518264 + GA-rich Low_complexity Low_complexity 3 44 0 232 269 75 21 chr9 16344902 16344995 -101517632 + L2 LINE L2 3146 3243 -29 2518 223 75 43 chr9 16345534 16346409 -101516218 - L1MD2 LINE L1 -412 5947 5008 2035 118 11 0 chr9 16346409 16346716 -101515911 - AluSx SINE Alu 0 310 1 2518 223 75 43 chr9 16346716 16347391 -101515236 - L1MD2 LINE L1 -1351 5008 4356 2225 82 3 10 chr9 16347436 16347740 -101514887 - AluY SINE Alu -9 302 1 21 0 0 0 chr9 16347740 16347761 -101514866 + AT_rich Low_complexity Low_complexity 1 21 0 225 353 95 14 chr9 16348893 16349176 -101513451 + L1MC/D LINE L1 5510 5815 -1993 2353 75 0 10 chr9 16351841 16352136 -101510491 - AluSp SINE Alu -9 304 13 1147 177 27 4 chr9 16352275 16352535 -101510092 + L1MA4 LINE L1 6028 6293 -7 225 321 27 0 chr9 16352571 16352683 -101509944 + GA-rich Low_complexity Low_complexity 1 115 0 555 29 0 0 chr9 16353738 16353807 -101508820 + (TG)n Simple_repeat Simple_repeat 1 69 0 1407 166 55 60 chr9 16353838 16354255 -101508372 + LTR37A LTR ERV1 3 417 -9 1373 154 82 26 chr9 16354416 16354683 -101507944 + AluJo SINE Alu 13 294 -18 2117 108 3 10 chr9 16354710 16354998 -101507629 + AluSq SINE Alu 14 299 -14 2189 119 0 19 chr9 16355003 16355315 -101507312 + AluSx SINE Alu 4 309 -3 311 278 96 61 chr9 16355544 16355742 -101506885 + L2 LINE L2 3102 3306 -7 670 279 99 36 chr9 16356157 16356490 -101506137 - L2 LINE L2 -9 3304 2951 182 237 0 0 chr9 16357140 16357178 -101505449 - MER5A DNA MER1_type -3 186 149 1841 73 150 0 chr9 16357353 16357613 -101505014 + AluSg SINE Alu 2 300 0 203 298 99 30 chr9 16357663 16357794 -101504833 + MIR SINE MIR 3 142 -120 23 0 0 0 chr9 16358052 16358075 -101504552 + AT_rich Low_complexity Low_complexity 1 23 0 432 252 0 55 chr9 16358546 16358673 -101503954 + MIR SINE MIR 65 184 -78 211 275 44 66 chr9 16359852 16359943 -101502684 + MIR SINE MIR 97 185 -77 287 167 167 0 chr9 16360100 16360190 -101502437 - L1MD3 LINE L1 -12 7983 7879 501 158 59 0 chr9 16360190 16360291 -101502336 - L1MC4 LINE L1 -473 7569 7463 639 172 0 0 chr9 16360291 16360390 -101502237 + 5S rRNA rRNA 1 99 -22 1857 229 102 8 chr9 16360390 16361040 -101501587 - L1MC4a LINE L1 -421 7387 6677 778 103 22 114 chr9 16361696 16361880 -101500747 - L1MB2 LINE L1 0 6171 6005 771 125 56 49 chr9 16363185 16363329 -101499298 + MER46A DNA MER2_type 1 145 -91 21 0 0 0 chr9 16364052 16364073 -101498554 + AT_rich Low_complexity Low_complexity 1 21 0 227 30 0 0 chr9 16364930 16364963 -101497664 + L1ME4a LINE L1 5963 5995 -126 29 47 0 0 chr9 16365033 16365076 -101497551 + AT_rich Low_complexity Low_complexity 1 43 0 384 306 125 36 chr9 16365649 16366041 -101496586 - L1ME4a LINE L1 -60 6061 5635 209 56 0 28 chr9 16366399 16366435 -101496192 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2351 82 0 3 chr9 16366454 16366748 -101495879 + AluSq SINE Alu 5 297 -16 21 71 0 0 chr9 16367383 16367425 -101495202 + AT_rich Low_complexity Low_complexity 1 42 0 2319 93 0 0 chr9 16367606 16367895 -101494732 + AluSq SINE Alu 1 289 -24 637 227 61 4 chr9 16367899 16368216 -101494411 + MER93b LTR ERV1 7 373 0 1032 211 95 42 chr9 16368697 16369034 -101493593 + LTR37B LTR ERV1 24 378 -90 535 348 85 25 chr9 16369073 16369475 -101493152 - L1ME4a LINE L1 -1261 4885 4460 2438 153 40 78 chr9 16369638 16370126 -101492501 - L1MB8 LINE L1 0 6178 5720 2356 89 0 13 chr9 16370126 16370430 -101492197 + AluSx SINE Alu 1 300 -12 2438 153 40 78 chr9 16370430 16370594 -101492033 - L1MB8 LINE L1 -458 5720 5551 837 164 15 0 chr9 16370605 16370739 -101491888 - AluJo SINE Alu -176 136 1 927 186 105 8 chr9 16370748 16370996 -101491631 - L1MB8 LINE L1 -629 5555 5284 22 70 0 0 chr9 16371177 16371220 -101491407 + AT_rich Low_complexity Low_complexity 1 43 0 2439 227 71 14 chr9 16371423 16372115 -101490512 + L1PB4 LINE L1 1269 1999 -4850 1585 169 23 19 chr9 16372376 16372684 -101489943 - HUERS-P3 LTR ERV1 -8382 537 229 5235 53 12 5 chr9 16372750 16373867 -101488760 + SVA Other Other 1 1401 0 216 0 0 0 chr9 16373870 16373894 -101488733 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 9117 211 21 30 chr9 16373896 16375854 -101486773 + L1PB4 LINE L1 1994 3884 -2965 2174 137 0 0 chr9 16375854 16376154 -101486473 + AluSx SINE Alu 1 300 -12 9117 211 21 30 chr9 16376154 16377524 -101485103 + L1PB4 LINE L1 3884 5265 -1584 1824 181 3 0 chr9 16377524 16377817 -101484810 + AluJb SINE Alu 1 294 -18 4666 156 17 11 chr9 16377818 16378744 -101483883 + L1PB4 LINE L1 5928 6858 -1 317 292 123 27 chr9 16380321 16380540 -101482087 + L3 LINE CR1 795 1034 -543 2242 112 0 10 chr9 16380566 16380861 -101481766 - AluSx SINE Alu -12 300 9 229 278 217 35 chr9 16380894 16381009 -101481618 + L2 LINE L2 3178 3313 0 2054 155 0 3 chr9 16381123 16381433 -101481194 + AluJb SINE Alu 1 309 -3 594 195 82 18 chr9 16381528 16381699 -101480928 + L1MC4 LINE L1 7874 8042 0 767 160 33 7 chr9 16382270 16382420 -101480207 + L1M1 LINE L1 17 170 -7395 1307 182 27 4 chr9 16382451 16382676 -101479951 + AluJo SINE Alu 1 230 -82 311 256 37 60 chr9 16383123 16383296 -101479331 + MIR3 SINE MIR 1 167 -67 214 397 64 19 chr9 16383781 16383937 -101478690 + L2 LINE L2 3033 3195 -77 2189 83 3 17 chr9 16384796 16385106 -101477521 + AluSp SINE Alu 1 306 0 1424 255 123 13 chr9 16385319 16385782 -101476845 + MLT1G1 LTR MaLR 73 586 -9 571 302 117 66 chr9 16385789 16386200 -101476427 + L3 LINE CR1 985 1416 -161 183 156 0 0 chr9 16386656 16386688 -101475939 + A-rich Low_complexity Low_complexity 1 32 0 306 284 39 10 chr9 16386792 16386894 -101475733 + MIR SINE MIR 81 185 -77 184 344 56 11 chr9 16387033 16387123 -101475504 + L2 LINE L2 3142 3235 -37 254 269 126 42 chr9 16387307 16387426 -101475201 + L2 LINE L2 3170 3298 -15 416 19 0 19 chr9 16387427 16387481 -101475146 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 2260 99 0 0 chr9 16389748 16390041 -101472586 + AluSg SINE Alu 1 293 -17 1619 141 3 31 chr9 16390133 16390423 -101472204 + AluSp SINE Alu 21 302 -11 1938 112 56 0 chr9 16390483 16390752 -101471875 + AluSx SINE Alu 3 311 0 193 40 0 0 chr9 16390752 16390777 -101471850 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1784 149 6 16 chr9 16390799 16390870 -101471757 + AluJo SINE Alu 13 83 -229 4997 82 14 54 chr9 16390870 16391590 -101471037 + LTR8 LTR ERV1 1 691 0 1784 149 6 16 chr9 16391590 16391819 -101470808 + AluJo SINE Alu 83 299 -13 313 119 0 0 chr9 16392303 16392345 -101470282 + Alu SINE Alu 3 44 -258 1685 81 31 0 chr9 16392347 16392570 -101470057 + LTR8 LTR ERV1 106 335 -356 1866 185 30 22 chr9 16392651 16393013 -101469614 - MLT1A1 LTR MaLR 0 365 1 196 186 88 108 chr9 16393137 16393157 -101469470 - MER5A DNA MER1_type -45 144 125 204 40 0 0 chr9 16393157 16393182 -101469445 + (CAG)n Simple_repeat Simple_repeat 2 26 0 196 186 88 108 chr9 16393182 16393263 -101469364 - MER5A DNA MER1_type -64 125 45 2338 71 3 7 chr9 16393297 16393593 -101469034 - AluY SINE Alu -16 295 1 240 200 0 0 chr9 16393617 16393667 -101468960 + CT-rich Low_complexity Low_complexity 2 51 0 781 216 53 0 chr9 16393671 16393842 -101468785 - L1M4 LINE L1 -1949 4197 4018 712 188 182 11 chr9 16393843 16394024 -101468603 - AluSc SINE Alu -11 298 87 971 210 42 38 chr9 16394027 16394289 -101468338 - L1M4 LINE L1 -2121 4025 3763 198 0 0 0 chr9 16394337 16394359 -101468268 + (TCTCCC)n Simple_repeat Simple_repeat 1 22 0 484 346 50 14 chr9 16394367 16394647 -101467980 + L2 LINE L2 2550 2839 -475 226 258 17 50 chr9 16394874 16394994 -101467633 + L2 LINE L2 3122 3237 -76 903 115 0 89 chr9 16395088 16395127 -101467500 - MSTA LTR MaLR 0 428 387 1971 163 27 0 chr9 16395127 16395428 -101467199 + AluJo SINE Alu 1 309 -3 903 115 0 89 chr9 16395428 16395545 -101467082 - MSTA LTR MaLR -41 387 286 242 393 11 22 chr9 16395685 16395863 -101466764 - MIR SINE MIR -72 190 15 1974 199 54 10 chr9 16395889 16396277 -101466350 - LTR57 LTR ERVL 0 411 7 788 174 0 22 chr9 16396423 16396561 -101466066 + FLAM_C SINE Alu 1 135 -8 259 286 157 11 chr9 16396577 16396762 -101465865 + L1MEc LINE L1 109 320 -6076 1260 215 37 6 chr9 16396906 16397231 -101465396 + L1MEc LINE L1 2554 2888 -3327 1666 176 37 4 chr9 16397268 16397541 -101465086 + AluJo SINE Alu 1 282 -30 243 0 0 0 chr9 16397545 16397572 -101465055 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 893 224 41 27 chr9 16397767 16397986 -101464641 - L1MD2 LINE L1 -472 5887 5666 1970 141 0 52 chr9 16397986 16398173 -101464454 - AluSx SINE Alu -2 310 115 221 0 35 0 chr9 16398173 16398202 -101464425 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1946 134 7 0 chr9 16398202 16398478 -101464149 - AluSg SINE Alu -30 280 3 1970 141 0 52 chr9 16398478 16398616 -101464011 - AluSx SINE Alu -195 117 1 1461 133 5 5 chr9 16398617 16398828 -101463799 + THE1B LTR MaLR 154 364 0 * 1885 176 9 3 chr9 16398828 16399145 -101463482 - MLT2C2 LTR ERVL -145 319 1 1433 212 24 14 chr9 16399149 16399441 -101463186 + AluJb SINE Alu 1 295 -17 428 119 179 0 chr9 16399466 16399550 -101463077 - L1MD2 LINE L1 -549 5617 5519 566 159 166 53 chr9 16399649 16399800 -101462827 - MER34C LTR ERV1 0 585 418 697 84 11 0 chr9 16399900 16399995 -101462632 - AluS SINE Alu -216 96 1 508 86 0 0 chr9 16399995 16400064 -101462563 - AluSg SINE Alu -9 300 232 1316 64 0 13 chr9 16400064 16400221 -101462406 - AluSg SINE Alu -155 155 1 2144 119 0 10 chr9 16400221 16400515 -101462112 - AluSx SINE Alu -21 291 1 263 139 0 89 chr9 16400521 16400600 -101462027 + MER106B DNA MER1_type 834 905 -154 2169 129 0 3 chr9 16400772 16401083 -101461544 - AluSx SINE Alu -2 310 1 240 322 70 0 chr9 16401090 16401205 -101461422 - L2 LINE L2 0 3272 3150 385 245 53 0 chr9 16401265 16401359 -101461268 + MER94 DNA DNA 1 99 -35 2353 92 3 19 chr9 16401637 16401953 -101460674 - AluSq SINE Alu -2 311 1 407 230 97 118 chr9 16403381 16403720 -101458907 - L2 LINE L2 -37 3235 2904 409 139 76 0 chr9 16403768 16403844 -101458783 - MLT2B2 LTR ERVL -13 502 421 2492 132 6 3 chr9 16403844 16404207 -101458420 + THE1B LTR MaLR 1 364 0 * 2765 184 6 24 chr9 16404207 16404691 -101457936 - MLT2B3 LTR ERVL -79 475 1 402 270 20 40 chr9 16405121 16405269 -101457358 + MIR3 SINE MIR 46 190 -18 810 183 0 107 chr9 16405537 16405734 -101456893 - AluJb SINE Alu 0 312 137 2264 108 0 16 chr9 16405760 16406076 -101456551 + AluSq SINE Alu 1 311 -2 501 162 121 10 chr9 16406081 16406180 -101456447 + MER2 DNA MER2_type 235 344 -1 2771 66 3 0 chr9 16406311 16406660 -101455967 - L1PA8 LINE L1 -77 6095 5746 516 62 0 49 chr9 16406666 16406747 -101455880 + L1PA8 LINE L1 6095 6171 -1 2433 95 0 0 chr9 16406782 16407088 -101455539 - AluSq SINE Alu -7 306 1 1344 87 0 22 chr9 16407466 16407651 -101454976 - MER34C LTR ERV1 -361 224 44 314 193 18 0 chr9 16408028 16408085 -101454542 - MLT2B2 LTR ERVL -263 252 195 192 40 0 0 chr9 16408658 16408683 -101453944 + (TC)n Simple_repeat Simple_repeat 2 26 0 226 298 29 19 chr9 16408889 16408993 -101453634 + CT-rich Low_complexity Low_complexity 2 106 0 372 134 0 45 chr9 16409055 16409122 -101453505 + MER4D LTR ERV1 1 64 -808 * 708 110 46 0 chr9 16409119 16409228 -101453399 + MER4E LTR ERV1 653 766 0 5837 130 65 67 chr9 16409234 16409446 -101453181 + MER4E-int LTR ERV1 22 233 -6525 2222 82 3 10 chr9 16409446 16409737 -101452890 - AluY SINE Alu -22 289 1 5837 130 65 67 chr9 16409737 16410511 -101452116 + MER4E-int LTR ERV1 233 1008 -5750 767 186 0 0 chr9 16410511 16410635 -101451992 - FLAM_C SINE Alu -9 124 1 5837 130 65 67 chr9 16410635 16410775 -101451852 + MER4E-int LTR ERV1 1008 1147 -5611 342 0 0 0 chr9 16410775 16410813 -101451814 + (TG)n Simple_repeat Simple_repeat 2 39 0 1188 183 56 37 chr9 16410813 16411222 -101451405 + MER4E-int LTR ERV1 1161 1673 -4925 2042 128 3 7 chr9 16411241 16411538 -101451089 + AluSc SINE Alu 1 296 -13 10196 127 18 13 chr9 16411557 16412916 -101449711 + L1PBa LINE L1 1 1371 -5492 2288 119 0 0 chr9 16412916 16413218 -101449409 - AluSg SINE Alu -8 302 1 10196 127 18 13 chr9 16413218 16413438 -101449189 + L1PBa LINE L1 1371 1588 -5275 2996 89 49 2 chr9 16413464 16413911 -101448716 + L1PBa LINE L1 2076 2543 -4320 747 295 165 24 chr9 16414207 16414661 -101447966 - LTR33 LTR ERVL -3 518 1 219 36 0 0 chr9 16414768 16414796 -101447831 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1963 144 14 0 chr9 16414796 16415081 -101447546 - AluJb SINE Alu -23 289 1 2325 110 0 0 chr9 16415316 16415626 -101447001 + AluSg SINE Alu 1 310 0 1541 161 89 18 chr9 16415989 16416269 -101446358 + AluJo SINE Alu 1 300 -12 204 182 0 0 chr9 16416801 16416845 -101445782 + CT-rich Low_complexity Low_complexity 2 45 0 992 205 162 34 chr9 16416927 16416958 -101445669 - L1ME1 LINE L1 -4 6162 6136 1725 98 87 34 chr9 16416958 16417247 -101445380 - AluSg SINE Alu 0 303 1 1752 146 7 26 chr9 16417250 16417552 -101445075 - AluJo SINE Alu -16 296 1 992 205 162 34 chr9 16417552 16417866 -101444761 - L1ME1 LINE L1 -31 6135 5767 2300 63 0 37 chr9 16417891 16418190 -101444437 + AluY SINE Alu 1 288 -23 399 237 0 0 chr9 16418190 16418199 -101444428 + (TA)n Simple_repeat Simple_repeat 2 10 -100 2927 3 0 0 chr9 16418199 16418506 -101444121 + AluYb8 SINE Alu 1 307 -11 399 237 0 0 chr9 16418506 16418605 -101444022 + (TA)n Simple_repeat Simple_repeat 9 110 0 1897 127 9 50 chr9 16418613 16418760 -101443867 + AluJo SINE Alu 1 152 -160 1757 133 37 20 chr9 16418760 16419054 -101443573 + AluSx SINE Alu 1 299 -13 1897 127 9 50 chr9 16419054 16419229 -101443398 + AluJo SINE Alu 152 310 -2 3989 232 93 28 chr9 16419229 16419611 -101443016 - L1ME1 LINE L1 -383 5781 5425 2334 101 0 13 chr9 16419611 16419917 -101442710 + AluSg SINE Alu 1 302 -8 3989 232 93 28 chr9 16419917 16420356 -101442271 - L1ME1 LINE L1 -739 5425 5016 2463 83 3 3 chr9 16420356 16420668 -101441959 + AluSp SINE Alu 1 312 -1 3989 232 93 28 chr9 16420668 16421524 -101441103 - L1ME1 LINE L1 -1148 5016 3981 1533 190 17 17 chr9 16421528 16421817 -101440810 + AluJb SINE Alu 3 291 -21 521 45 0 0 chr9 16421820 16421887 -101440740 + AluY SINE Alu 2 68 -241 7489 212 18 15 chr9 16421988 16422083 -101440544 + L1PB1 LINE L1 2241 2334 -3812 2330 107 0 7 chr9 16422083 16422391 -101440236 - AluY SINE Alu -5 306 1 7489 212 18 15 chr9 16422391 16423223 -101439404 + L1PB1 LINE L1 2334 3178 -2968 194 0 39 0 chr9 16423223 16423249 -101439378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7489 212 18 15 chr9 16423249 16424034 -101438593 + L1PB1 LINE L1 3178 3959 -2187 2384 62 0 0 chr9 16424035 16424309 -101438318 + AluSg SINE Alu 1 274 -36 3951 167 8 1 chr9 16424311 16425567 -101437060 + L1PB1 LINE L1 4526 5791 -360 570 83 68 0 chr9 16425576 16425709 -101436918 + (TA)n Simple_repeat Simple_repeat 1 142 0 2465 105 5 14 chr9 16425716 16426087 -101436540 + L1PB1 LINE L1 5783 6150 -1 2006 139 21 68 chr9 16426247 16426402 -101436225 + MLT1A1 LTR MaLR 1 162 -203 1552 148 112 0 chr9 16426402 16426680 -101435947 + AluJo SINE Alu 1 309 -3 2006 139 21 68 chr9 16426680 16426905 -101435722 + MLT1A1 LTR MaLR 162 363 -2 2286 110 7 0 chr9 16427561 16427869 -101434758 - AluSg SINE Alu 0 310 1 6682 153 47 79 chr9 16427932 16429302 -101433325 - SVA Other Other 0 1386 61 21 0 0 0 chr9 16429310 16429331 -101433296 + AT_rich Low_complexity Low_complexity 1 21 0 306 153 0 69 chr9 16429351 16429423 -101433204 - L1M4c LINE L1 -4807 1577 1511 252 89 0 44 chr9 16429469 16429514 -101433113 - L1MA6 LINE L1 -4 6296 6254 915 168 25 3 chr9 16429574 16429746 -101432881 - L1P5 LINE L1 -473 5683 5514 5749 70 22 40 chr9 16429752 16430579 -101432048 - SVA Other Other 0 1386 575 23 33 0 0 chr9 16430581 16430611 -101432016 + GC_rich Low_complexity Low_complexity 1 30 0 522 203 68 0 chr9 16430793 16430926 -101431701 - L1M4 LINE L1 -2161 3985 3844 925 201 23 11 chr9 16430926 16431100 -101431527 - AluJb SINE Alu -11 301 126 1870 222 68 17 chr9 16431102 16431693 -101430934 - L1M4 LINE L1 -2652 3494 2874 1838 77 0 0 chr9 16431702 16431923 -101430704 + AluSc SINE Alu 2 222 -87 259 322 76 52 chr9 16432178 16432756 -101429871 + HAL1b LINE L1 54 645 -703 362 306 24 0 chr9 16433221 16433391 -101429236 + L1MC4a LINE L1 2232 2405 -3741 1571 205 7 3 chr9 16433529 16433832 -101428795 + AluJo SINE Alu 1 304 -8 351 224 71 0 chr9 16433832 16433930 -101428697 + L1MC4a LINE L1 3063 3167 -2979 799 222 61 117 chr9 16433930 16434272 -101428355 + L1MC4a LINE L1 5609 5931 -1877 1107 207 204 36 chr9 16434273 16434887 -101427740 + LTR41 LTR ERVL 1 766 -7 793 214 89 77 chr9 16434895 16435245 -101427382 + L1MC4a LINE L1 5936 6289 -1519 207 0 0 0 chr9 16435265 16435288 -101427339 + (T)n Simple_repeat Simple_repeat 1 23 0 404 208 0 0 chr9 16435288 16435360 -101427267 - U6 snRNA snRNA -9 98 27 941 252 56 0 chr9 16435433 16435739 -101426888 + L1MC4a LINE L1 6387 6600 -1208 208 229 21 0 chr9 16436963 16437011 -101425616 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 282 360 48 8 chr9 16437011 16437136 -101425491 - L2 LINE L2 -22 3250 3121 252 0 0 0 chr9 16437310 16437338 -101425289 + (CA)n Simple_repeat Simple_repeat 2 29 0 915 294 20 0 chr9 16437342 16437634 -101424993 + L1MC4a LINE L1 5592 5889 -1919 5600 82 32 55 chr9 16437634 16438520 -101424107 + SVA Other Other 4 868 -518 2109 127 0 3 chr9 16438650 16438941 -101423686 - AluSx SINE Alu -22 290 1 325 193 0 0 chr9 16438954 16439011 -101423616 - FLAM_A SINE Alu 0 133 77 509 164 74 187 chr9 16439019 16439315 -101423312 + Charlie8 DNA MER1_type 59 1415 -1002 229 75 104 119 chr9 16440097 16440164 -101422463 - MLT1K LTR MaLR -1 587 522 378 79 175 0 chr9 16440182 16440245 -101422382 + MER34 LTR ERV1 1 74 -468 25 31 0 0 chr9 16440256 16440288 -101422339 + AT_rich Low_complexity Low_complexity 1 32 0 2376 70 0 0 chr9 16440288 16440572 -101422055 - AluSg SINE Alu -26 284 1 4124 98 52 8 chr9 16440574 16441183 -101421444 + LTR9B LTR ERV1 9 644 0 3265 126 2 4 chr9 16441183 16441656 -101420971 + MER34 LTR ERV1 71 542 0 325 252 28 37 chr9 16441856 16441963 -101420664 - MLT1K LTR MaLR -325 263 158 1464 145 9 5 chr9 16442066 16442287 -101420340 + AluJb SINE Alu 1 222 -90 738 50 110 0 chr9 16442287 16442387 -101420240 - LTR7 LTR ERV1 0 450 340 2429 89 0 0 chr9 16442404 16442706 -101419921 - AluSg SINE Alu -8 302 1 2155 132 0 0 chr9 16442851 16443147 -101419480 - AluSq SINE Alu -17 296 1 3289 201 68 15 chr9 16443147 16443824 -101418803 - L1M4 LINE L1 -946 5436 4709 2398 89 0 3 chr9 16443824 16444128 -101418499 - AluSp SINE Alu -10 303 1 3289 201 68 15 chr9 16444128 16444246 -101418381 - L1M4 LINE L1 -1673 4709 4599 2141 110 10 0 chr9 16444246 16444536 -101418091 - AluSx SINE Alu -19 293 1 3229 204 113 96 chr9 16444536 16446009 -101416618 - L1M4 LINE L1 -2170 4212 2715 1365 211 0 4 chr9 16446009 16446275 -101416352 - AluJb SINE Alu -8 304 40 288 266 28 9 chr9 16446275 16446384 -101416243 - L1M4 LINE L1 -3657 2725 2615 654 204 18 0 chr9 16446398 16446511 -101416116 - FLAM_A SINE Alu -16 126 12 2164 123 3 0 chr9 16446544 16446837 -101415790 - AluSx SINE Alu -18 294 1 290 211 0 0 chr9 16446886 16446938 -101415689 + Tigger5 DNA MER2_type 4 55 -2268 * 310 221 70 0 chr9 16446930 16447016 -101415611 + Tigger5 DNA MER2_type 2215 2306 -17 1475 190 17 71 chr9 16447018 16447516 -101415111 - L1M4 LINE L1 -4241 2143 1568 465 250 0 39 chr9 16447528 16447632 -101414995 + AluJo SINE Alu 121 220 -92 2314 101 3 0 chr9 16447671 16447967 -101414660 + AluSx SINE Alu 1 297 -15 2190 103 14 0 chr9 16447971 16448262 -101414365 + AluY SINE Alu 3 297 -14 24 0 0 0 chr9 16448262 16448286 -101414341 + AT_rich Low_complexity Low_complexity 1 24 0 1072 90 7 0 chr9 16448289 16448434 -101414193 + Tigger1 DNA MER2_type 1465 1610 -808 1841 143 0 0 chr9 16448473 16448738 -101413889 + AluSx SINE Alu 43 307 -5 1453 175 7 42 chr9 16448749 16449034 -101413593 - AluJo SINE Alu -29 283 9 1956 89 13 73 chr9 16449042 16449279 -101413348 + Tigger1 DNA MER2_type 1607 1857 -561 7080 79 42 8 chr9 16449279 16450311 -101412316 - L1PA10 LINE L1 0 6168 5133 829 122 0 0 chr9 16450311 16450418 -101412209 - U6 snRNA snRNA 0 107 1 1956 89 13 73 chr9 16450418 16450492 -101412135 + Tigger1 DNA MER2_type 1855 1900 -518 937 192 0 0 chr9 16450495 16450662 -101411965 - AluJb SINE Alu -6 306 140 1743 179 0 3 chr9 16450663 16450948 -101411679 - AluJb SINE Alu -20 292 9 1015 152 0 0 chr9 16450955 16451106 -101411521 + Tigger1 DNA MER2_type 2268 2418 0 2100 169 68 3 chr9 16451108 16451493 -101411134 + L1MC1 LINE L1 5924 6333 0 1967 161 3 0 chr9 16451632 16451937 -101410690 + AluSp SINE Alu 1 306 -7 771 186 0 16 chr9 16451940 16452069 -101410558 - FLAM_A SINE Alu -6 127 1 22 56 0 0 chr9 16452069 16452105 -101410522 + AT_rich Low_complexity Low_complexity 1 36 0 232 216 149 14 chr9 16452140 16452214 -101410413 + MLT1L LTR MaLR 2 85 -530 327 197 16 0 chr9 16452286 16452347 -101410280 + MLT1J LTR MaLR 112 173 -338 351 259 47 59 chr9 16452364 16452521 -101410106 + MLT1L LTR MaLR 439 593 -22 632 186 107 79 chr9 16452521 16452698 -101409929 + MER63A DNA MER1_type 1 182 -28 2322 102 7 0 chr9 16452977 16453152 -101409475 - AluSc SINE Alu -3 306 127 233 0 62 0 chr9 16453152 16453184 -101409443 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2322 102 7 0 chr9 16453184 16453312 -101409315 - AluSc SINE Alu -182 127 1 1600 199 16 7 chr9 16453358 16453665 -101408962 + AluJb SINE Alu 1 310 -2 1040 248 51 0 chr9 16453681 16453935 -101408692 + MER110 LTR ERV1 225 491 0 402 297 61 47 chr9 16453935 16454147 -101408480 - L1ME LINE L1 -513 5608 5394 856 192 17 47 chr9 16454371 16454543 -101408084 - FRAM SINE Alu -17 159 1 720 238 28 14 chr9 16454543 16454757 -101407870 + Charlie2a DNA MER1_type 672 888 -1974 473 160 24 0 chr9 16454761 16454849 -101407778 + MER2 DNA MER2_type 1 89 -150 234 229 42 0 chr9 16454956 16455004 -101407623 + MER2 DNA MER2_type 296 345 0 626 175 100 33 chr9 16455073 16455193 -101407434 + FLAM_A SINE Alu 8 135 -7 1117 184 88 102 chr9 16455193 16455535 -101407092 + Charlie2 DNA MER1_type 986 1331 -1531 2300 112 0 0 chr9 16455535 16455831 -101406796 - AluSx SINE Alu -16 296 1 1117 184 88 102 chr9 16455831 16456186 -101406441 + Charlie2 DNA MER1_type 1331 2809 -53 318 133 33 0 chr9 16456653 16456713 -101405914 + L1MD3 LINE L1 7057 7118 -877 246 226 11 118 chr9 16456715 16456808 -101405819 + MLT1F1 LTR MaLR 35 117 -450 1428 212 19 134 chr9 16456808 16457071 -101405556 + L1MD3 LINE L1 7182 7474 -521 829 110 17 0 chr9 16457071 16457189 -101405438 + AluSg/x SINE Alu 186 305 -5 1428 212 19 134 chr9 16457189 16457552 -101405075 + L1MD3 LINE L1 7474 7995 0 1669 151 43 0 chr9 16457591 16457870 -101404757 + AluJo SINE Alu 3 293 -19 5304 126 66 7 chr9 16458154 16459014 -101403613 + L1MC1 LINE L1 5423 6333 0 1575 192 0 28 chr9 16459041 16459404 -101403223 + AluJo SINE Alu 1 312 0 586 269 76 0 chr9 16459604 16459775 -101402852 - MIR SINE MIR -58 204 21 458 248 70 13 chr9 16460043 16460200 -101402427 - MER103 DNA DNA 0 166 1 2212 118 0 7 chr9 16460628 16460932 -101401695 + AluSx SINE Alu 5 306 -6 2112 125 0 35 chr9 16460932 16461245 -101401382 + AluSx SINE Alu 1 302 -10 2203 93 0 3 chr9 16462028 16462318 -101400309 - AluSg SINE Alu -20 290 2 406 211 57 52 chr9 16462703 16462853 -101399774 + MIR SINE MIR 18 162 -46 272 118 0 20 chr9 16463099 16463150 -101399477 + (TCCCC)n Simple_repeat Simple_repeat 4 53 0 471 245 231 0 chr9 16463553 16463700 -101398927 - MER5A DNA MER1_type 0 189 9 200 186 0 51 chr9 16465874 16465933 -101396694 + C-rich Low_complexity Low_complexity 4 59 0 3994 195 51 56 chr9 16466825 16467808 -101394819 - L1MD1 LINE L1 -12 6230 5253 189 0 0 0 chr9 16467848 16467869 -101394758 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 1854 100 77 0 chr9 16467869 16468129 -101394498 - AluSx SINE Alu -32 280 1 3641 123 10 0 chr9 16468483 16468988 -101393639 + MER75 DNA T2_type 5 514 0 1536 252 28 9 chr9 16469064 16469493 -101393134 - L1MD1 LINE L1 -858 5288 4852 1770 194 9 13 chr9 16469530 16469845 -101392782 - 7SLRNA srpRNA srpRNA -6 314 1 186 167 44 9 chr9 16469873 16469987 -101392640 + (TA)n Simple_repeat Simple_repeat 1 118 0 792 216 92 79 chr9 16470003 16470382 -101392245 - L1MD1 LINE L1 -1564 4582 4199 472 276 17 6 chr9 16470385 16470559 -101392068 - L1MD1 LINE L1 -3357 2789 2614 772 176 0 29 chr9 16470565 16470701 -101391926 - FLAM_C SINE Alu -1 132 1 22 0 0 0 chr9 16470716 16470738 -101391889 + GC_rich Low_complexity Low_complexity 1 22 0 592 105 0 23 chr9 16471651 16471737 -101390890 - AluSg/x SINE Alu -21 289 206 815 78 0 0 chr9 16471837 16471940 -101390687 + AluSg/x SINE Alu 198 300 -10 1189 285 60 70 chr9 16472164 16472782 -101389845 - MER89-int LTR ERV1 -426 4221 3610 658 158 71 24 chr9 16472785 16472912 -101389715 + FLAM_C SINE Alu 1 133 0 2251 80 0 11 chr9 16472945 16473254 -101389373 + AluY SINE Alu 1 306 0 322 341 71 0 chr9 16473278 16473404 -101389223 - MER89-int LTR ERV1 -1044 3603 3469 1125 239 64 98 chr9 16473414 16473975 -101388652 - MER77 LTR ERV1 -8 597 138 1724 174 0 27 chr9 16474082 16474417 -101388210 + AluJb SINE Alu 1 312 0 2420 90 0 19 chr9 16474424 16474736 -101387891 + AluSx SINE Alu 1 306 -6 331 208 75 38 chr9 16474822 16474928 -101387699 - MER89-int LTR ERV1 -1218 3429 3320 841 253 64 67 chr9 16474977 16475365 -101387262 - MER89-int LTR ERV1 -1319 3328 2942 347 316 101 6 chr9 16475421 16475589 -101387038 - MER89-int LTR ERV1 -1640 5161 4978 26 0 0 0 chr9 16475992 16476018 -101386609 + AT_rich Low_complexity Low_complexity 1 26 0 550 118 18 18 chr9 16476046 16476156 -101386471 + L1MDb LINE L1 1081 1190 -5219 477 195 20 141 chr9 16476308 16476558 -101386069 - LTR50 LTR ERVL 0 795 556 2153 84 27 3 chr9 16476574 16476872 -101385755 - AluSq SINE Alu -8 305 1 343 298 33 33 chr9 16477171 16477322 -101385305 - LTR41 LTR ERVL -622 151 1 24 53 0 0 chr9 16477344 16477382 -101385245 + AT_rich Low_complexity Low_complexity 1 38 0 2227 100 0 7 chr9 16477410 16477709 -101384918 - AluSx SINE Alu -15 297 1 194 250 167 12 chr9 16478802 16478886 -101383741 + MIR3 SINE MIR 85 181 -27 1934 144 34 0 chr9 16480663 16480955 -101381672 - AluSg SINE Alu -8 302 1 572 254 113 11 chr9 16480958 16481143 -101381484 + MER113 DNA MER1_type? 232 435 -86 745 229 201 14 chr9 16481285 16481569 -101381058 - MER46C DNA MER2_type -1 337 1 21 0 0 0 chr9 16481648 16481669 -101380958 + AT_rich Low_complexity Low_complexity 1 21 0 561 218 259 14 chr9 16482570 16482790 -101379837 - L1MB8 LINE L1 -1 6177 5904 717 226 37 47 chr9 16483010 16483086 -101379541 + MER5A DNA MER1_type 2 77 -112 1620 158 90 0 chr9 16483086 16483364 -101379263 + AluJb SINE Alu 1 303 -9 717 226 37 47 chr9 16483364 16483477 -101379150 + MER5A DNA MER1_type 77 189 0 2295 62 0 0 chr9 16483565 16483840 -101378787 - AluY SINE Alu -9 302 28 2189 127 0 0 chr9 16484278 16484577 -101378050 + AluSg SINE Alu 1 299 -11 1323 169 54 65 chr9 16484649 16484928 -101377699 - AluJo SINE Alu -16 296 21 2129 134 3 0 chr9 16484931 16485238 -101377389 - AluSx SINE Alu -4 308 1 297 273 71 71 chr9 16485547 16485701 -101376926 + L2 LINE L2 2412 2565 -749 692 187 15 60 chr9 16485750 16485884 -101376743 + FLAM_A SINE Alu 1 128 -5 1179 159 48 5 chr9 16485929 16486136 -101376491 - MER2 DNA MER2_type 0 345 130 1664 123 67 21 chr9 16486140 16486424 -101376203 - MER1B DNA MER1_type -40 299 3 490 163 139 54 chr9 16486425 16486455 -101376172 - MER2 DNA MER2_type -205 140 114 243 0 0 0 chr9 16486455 16486482 -101376145 + (TA)n Simple_repeat Simple_repeat 1 27 0 490 163 139 54 chr9 16486482 16486580 -101376047 - MER2 DNA MER2_type -231 114 1 353 268 43 73 chr9 16486583 16486747 -101375880 + L2 LINE L2 2684 2842 -472 314 239 177 0 chr9 16486937 16487050 -101375577 + L2 LINE L2 3176 3308 -5 524 236 91 30 chr9 16487142 16487307 -101375320 + MIR SINE MIR 53 227 -35 2099 98 3 20 chr9 16487841 16488138 -101374489 - AluY SINE Alu -19 292 1 30 0 0 0 chr9 16488233 16488263 -101374364 + AT_rich Low_complexity Low_complexity 1 30 0 2208 110 0 7 chr9 16488431 16488731 -101373896 - AluSx SINE Alu -14 298 1 332 265 94 17 chr9 16489169 16489286 -101373341 + MIR3 SINE MIR 66 191 -17 2063 133 0 19 chr9 16489879 16490195 -101372432 - AluSx SINE Alu -2 310 1 2505 169 88 56 chr9 16490552 16490698 -101371929 - L1MB8 LINE L1 -118 6060 5920 2332 94 0 10 chr9 16490698 16490997 -101371630 + AluSg SINE Alu 1 296 -14 2505 169 88 56 chr9 16490997 16491495 -101371132 - L1MB8 LINE L1 -258 5920 5395 3949 201 94 14 chr9 16492015 16492962 -101369665 + Tigger6a DNA MER2_type 2 1024 -59 21 0 0 0 chr9 16493083 16493104 -101369523 + AT_rich Low_complexity Low_complexity 1 21 0 263 250 28 0 chr9 16493147 16493219 -101369408 - HAL1 LINE L1 -2193 314 241 345 270 184 13 chr9 16493227 16493379 -101369248 - HAL1 LINE L1 -2328 179 2 2256 107 7 0 chr9 16493729 16494038 -101368589 - AluSp SINE Alu -2 311 1 1727 139 85 26 chr9 16494420 16494772 -101367855 + THE1C LTR MaLR 1 373 -2 9406 119 68 8 chr9 16494774 16496265 -101366362 + THE1C-int LTR MaLR 1 1580 0 1813 119 91 26 chr9 16496265 16496617 -101366010 + THE1C LTR MaLR 1 375 0 357 274 0 0 chr9 16496672 16496756 -101365871 + Tigger5 DNA MER2_type 2240 2323 0 1525 210 49 10 chr9 16496782 16497376 -101365251 - MER82 DNA MER2_type 0 653 15 2484 82 0 0 chr9 16497617 16497921 -101364706 - AluSx SINE Alu -7 305 2 402 55 55 0 chr9 16497925 16497980 -101364647 - L1MB2 LINE L1 -46 6125 6068 2212 117 3 3 chr9 16498691 16498998 -101363629 - AluSq SINE Alu -6 307 1 2344 68 3 0 chr9 16499292 16499584 -101363043 - AluY SINE Alu -18 293 1 963 70 0 0 chr9 16499584 16499699 -101362928 - AluY SINE Alu -176 135 21 2079 125 3 10 chr9 16499964 16500275 -101362352 - AluSg SINE Alu -1 309 1 194 321 149 30 chr9 16500463 16500597 -101362030 + L2 LINE L2 3116 3265 -7 2031 131 0 22 chr9 16500697 16501011 -101361616 - AluSx SINE Alu -5 307 1 388 124 103 62 chr9 16501112 16501209 -101361418 - AluJb SINE Alu 0 302 202 763 135 16 0 chr9 16501209 16501335 -101361292 + AluJo/FRAM SINE Alu 179 306 -6 185 254 51 17 chr9 16501902 16501961 -101360666 + MIR3 SINE MIR 140 200 -8 370 225 106 56 chr9 16502502 16502644 -101359983 + MIR SINE MIR 113 261 -1 1085 194 61 68 chr9 16503171 16503332 -101359295 - AluJo SINE Alu -23 289 129 2158 111 3 35 chr9 16503332 16503511 -101359116 - AluSx SINE Alu -7 305 139 1981 128 30 7 chr9 16503511 16503815 -101358812 - AluSx SINE Alu -1 311 1 2158 111 3 35 chr9 16503815 16503950 -101358677 - AluSx SINE Alu -173 139 1 1085 194 61 68 chr9 16503950 16504066 -101358561 - AluJo SINE Alu -183 129 14 2217 114 0 13 chr9 16504115 16504421 -101358206 - AluSx SINE Alu -10 302 1 620 147 0 0 chr9 16504424 16504519 -101358108 - AluSg SINE Alu -179 131 37 206 324 42 0 chr9 16504640 16504711 -101357916 - L2 LINE L2 -71 3242 3169 1873 132 42 17 chr9 16506568 16506856 -101355771 - AluSg SINE Alu -15 295 1 248 267 57 48 chr9 16507002 16507107 -101355520 - MER5B DNA MER1_type -5 173 68 1908 152 13 3 chr9 16507324 16507627 -101355000 - AluSx SINE Alu -6 306 1 1588 138 54 20 chr9 16509996 16510292 -101352335 - AluJo SINE Alu -6 306 1 21 57 0 0 chr9 16510346 16510381 -101352246 + AT_rich Low_complexity Low_complexity 1 35 0 1074 141 22 0 chr9 16510747 16510931 -101351696 + L1MA8 LINE L1 6094 6281 -10 384 248 120 8 chr9 16512582 16512715 -101349912 - L1MC/D LINE L1 -2114 5694 5547 342 257 44 26 chr9 16513080 16513193 -101349434 + MIR3 SINE MIR 85 199 -9 1987 148 23 0 chr9 16514218 16514523 -101348104 - AluSx SINE Alu 0 312 1 216 0 0 0 chr9 16517190 16517214 -101345413 + (T)n Simple_repeat Simple_repeat 1 24 0 28 29 0 0 chr9 16517478 16517513 -101345114 + AT_rich Low_complexity Low_complexity 1 35 0 1960 128 153 8 chr9 16519576 16519967 -101342660 + Tigger4(Zombi) DNA MER2_type 1892 2339 -392 2221 100 3 10 chr9 16519968 16520269 -101342358 - AluSp SINE Alu -12 301 3 323 210 170 62 chr9 16520411 16520635 -101341992 - L1MC5 LINE L1 -44 7917 7670 2126 115 10 3 chr9 16521707 16522012 -101340615 - AluSq SINE Alu -6 307 1 306 0 0 0 chr9 16524582 16524616 -101338011 + (CACCC)n Simple_repeat Simple_repeat 3 36 0 1371 90 0 0 chr9 16524717 16524894 -101337733 + AluSg/x SINE Alu 133 309 -3 1704 170 0 7 chr9 16526681 16526970 -101335657 + AluJb SINE Alu 2 288 -24 2273 102 0 0 chr9 16527451 16527744 -101334883 + AluSq SINE Alu 1 293 -20 333 234 86 16 chr9 16527907 16528035 -101334592 + L1M4 LINE L1 5155 5291 -855 953 159 84 44 chr9 16529111 16529338 -101333289 - MER46A DNA MER2_type 0 236 1 375 151 151 23 chr9 16529375 16529461 -101333166 - FLAM_C SINE Alu 0 133 37 307 279 107 0 chr9 16529662 16529784 -101332843 + MER103 DNA DNA 32 166 0 1887 173 0 0 chr9 16530593 16530893 -101331734 - AluJo SINE Alu -12 300 1 323 360 50 14 chr9 16531123 16531262 -101331365 + MIR3 SINE MIR 58 201 -7 1802 184 0 0 chr9 16531441 16531735 -101330892 + AluJo SINE Alu 4 297 -15 2270 102 0 13 chr9 16531896 16532032 -101330595 + AluSx SINE Alu 1 137 -175 2372 88 3 0 chr9 16532032 16532340 -101330287 + AluSp SINE Alu 1 309 -4 2270 102 0 13 chr9 16532340 16532508 -101330119 + AluSx SINE Alu 137 301 -11 2088 132 7 0 chr9 16532626 16532921 -101329706 - AluSx SINE Alu -15 297 1 728 262 134 61 chr9 16532943 16533250 -101329377 - HAL1 LINE L1 -10 2497 2214 2303 80 10 0 chr9 16533250 16533550 -101329077 - AluY SINE Alu -8 303 1 728 262 134 61 chr9 16533550 16533897 -101328730 - HAL1 LINE L1 -293 2214 1654 1993 149 30 0 chr9 16533947 16534248 -101328379 - AluJb SINE Alu -1 311 2 531 200 35 41 chr9 16535472 16535588 -101327039 + Charlie1 DNA MER1_type 2618 2734 -27 2244 88 10 0 chr9 16535588 16535883 -101326744 + AluSp SINE Alu 1 298 -15 531 200 35 41 chr9 16535883 16535911 -101326716 + Charlie1 DNA MER1_type 2734 2761 0 1808 154 4 0 chr9 16535944 16536217 -101326410 + AluSx SINE Alu 2 275 -37 910 168 0 13 chr9 16536483 16536638 -101325989 - FAM SINE Alu -9 40 1 424 252 204 7 chr9 16537423 16537570 -101325057 + MER5B DNA MER1_type 2 177 -1 495 257 41 35 chr9 16537613 16537784 -101324843 + MIR SINE MIR 36 207 -55 293 296 58 47 chr9 16537888 16538060 -101324567 + MIR SINE MIR 40 213 -49 2166 98 0 0 chr9 16538364 16538641 -101323986 + AluSp SINE Alu 30 306 -7 261 0 0 0 chr9 16538641 16538670 -101323957 + (TA)n Simple_repeat Simple_repeat 2 30 0 2011 122 23 7 chr9 16539095 16539398 -101323229 + AluSx SINE Alu 1 308 -4 213 399 101 4 chr9 16539697 16539925 -101322702 - L2 LINE L2 -215 3057 2808 197 305 24 0 chr9 16540497 16540579 -101322048 - L2 LINE L2 -1306 2008 1925 563 92 0 0 chr9 16540607 16540694 -101321933 + Alu SINE Alu 223 309 0 220 340 21 10 chr9 16540745 16540842 -101321785 - L2 LINE L2 -1476 1838 1741 1013 232 60 45 chr9 16541306 16541642 -101320985 + MER74A LTR ERVL 155 495 -63 1815 178 34 0 chr9 16541701 16541994 -101320633 + AluJo SINE Alu 3 305 -7 1527 187 56 4 chr9 16542272 16542540 -101320087 - AluJb SINE Alu -30 282 1 1828 164 0 7 chr9 16543113 16543394 -101319233 - AluJo SINE Alu -31 281 3 217 298 184 18 chr9 16543657 16543771 -101318856 + MIR SINE MIR 2 134 -128 271 283 212 26 chr9 16543963 16544076 -101318551 - MIR SINE MIR -119 143 10 331 269 97 68 chr9 16544192 16544500 -101318127 + L1M4c LINE L1 40 356 -6028 486 303 0 0 chr9 16544617 16544749 -101317878 + L1M4c LINE L1 554 685 -5595 504 235 40 0 chr9 16544780 16544929 -101317698 + L1M4c LINE L1 773 927 -5353 6023 74 25 13 chr9 16544987 16545843 -101316784 + SVA Other Other 3 868 -518 4379 151 54 13 chr9 16546035 16546571 -101316056 + L1MB4 LINE L1 5327 5909 -271 2201 112 7 0 chr9 16546571 16546867 -101315760 + AluSx SINE Alu 1 298 -14 4379 151 54 13 chr9 16546867 16547149 -101315478 + L1MB4 LINE L1 5909 6178 -2 4533 220 64 59 chr9 16547808 16549224 -101313403 - L1MC4a LINE L1 0 7808 6387 427 194 0 0 chr9 16549297 16549369 -101313258 + U6 snRNA snRNA 27 98 -9 207 0 0 0 chr9 16549369 16549392 -101313235 + (A)n Simple_repeat Simple_repeat 1 23 0 715 243 86 74 chr9 16549412 16549762 -101312865 - L1MC4a LINE L1 -1519 6289 5936 1688 118 0 0 chr9 16549962 16550191 -101312436 - AluSx SINE Alu -30 282 54 1870 131 11 18 chr9 16550426 16550737 -101311890 + AluSx SINE Alu 1 309 0 23 0 0 0 chr9 16551036 16551059 -101311568 + AT_rich Low_complexity Low_complexity 1 23 0 360 342 158 25 chr9 16551527 16551920 -101310707 - L2 LINE L2 -1 3271 2777 1946 128 30 3 chr9 16551920 16552216 -101310411 + AluSp SINE Alu 1 304 -9 360 342 158 25 chr9 16552216 16552396 -101310231 - L2 LINE L2 -495 2777 2622 1768 128 10 10 chr9 16552556 16552844 -101309783 + AluSx SINE Alu 1 288 -24 186 43 0 0 chr9 16552844 16552867 -101309760 + (CATAA)n Simple_repeat Simple_repeat 2 24 0 1027 195 132 3 chr9 16553374 16553661 -101308966 + MER5C DNA MER1_type 1 324 0 344 303 59 38 chr9 16553741 16554028 -101308599 + L1MC4 LINE L1 7720 8012 -30 23 54 0 0 chr9 16555270 16555307 -101307320 + GC_rich Low_complexity Low_complexity 1 37 0 1195 184 117 11 chr9 16555962 16556245 -101306382 - L1MB8 LINE L1 -12 6166 5854 2078 217 132 18 chr9 16556251 16556902 -101305725 + MER50 LTR ERV1 10 734 0 879 136 212 0 chr9 16556903 16557087 -101305540 - L1MB8 LINE L1 -318 5856 5634 355 191 0 0 chr9 16557090 16557153 -101305474 - MER2 DNA MER2_type 0 345 283 * 595 254 41 18 chr9 16557129 16557298 -101305329 - MER8 DNA MER2_type -60 179 7 1153 192 103 7 chr9 16557308 16557599 -101305028 - L1MB8 LINE L1 -566 5618 5300 1884 128 0 7 chr9 16557634 16557908 -101304719 - AluSp SINE Alu -7 306 35 402 297 61 47 chr9 16558353 16558565 -101304062 + L1ME LINE L1 5394 5608 -513 1040 248 51 0 chr9 16558565 16558819 -101303808 - MER110 LTR ERV1 0 491 225 1600 199 16 7 chr9 16558835 16559142 -101303485 - AluJb SINE Alu -2 310 1 2322 102 7 0 chr9 16559188 16559316 -101303311 + AluSc SINE Alu 1 127 -182 212 31 62 0 chr9 16559316 16559348 -101303279 + A-rich Low_complexity Low_complexity 2 35 0 2322 102 7 0 chr9 16559348 16559523 -101303104 + AluSc SINE Alu 127 306 -3 632 186 107 79 chr9 16559802 16559979 -101302648 - MER63A DNA MER1_type -28 182 1 351 259 47 59 chr9 16559979 16560136 -101302491 - MLT1L LTR MaLR -22 593 439 327 197 16 0 chr9 16560153 16560214 -101302413 - MLT1J LTR MaLR -338 173 112 232 216 149 14 chr9 16560286 16560360 -101302267 - MLT1L LTR MaLR -530 85 2 728 194 0 16 chr9 16560430 16560559 -101302068 + FLAM_A SINE Alu 1 127 -6 1967 161 3 0 chr9 16560562 16560867 -101301760 - AluSp SINE Alu -7 306 1 2100 169 68 3 chr9 16561006 16561391 -101301236 - L1MC1 LINE L1 0 6333 5924 1015 152 0 0 chr9 16561393 16561544 -101301083 - Tigger1 DNA MER2_type 0 2418 2268 1743 179 0 3 chr9 16561551 16561836 -101300791 + AluJb SINE Alu 9 292 -20 937 192 0 0 chr9 16561837 16562004 -101300623 + AluJb SINE Alu 140 306 -6 1956 89 13 73 chr9 16562007 16562081 -101300546 - Tigger1 DNA MER2_type -518 1900 1823 829 122 0 0 chr9 16562081 16562188 -101300439 + U6 snRNA snRNA 1 107 0 7080 79 8 9 chr9 16562188 16563220 -101299407 + L1PA10 LINE L1 5133 6168 0 1956 89 13 73 chr9 16563220 16563457 -101299170 - Tigger1 DNA MER2_type -593 1825 1607 1453 175 7 42 chr9 16563465 16563750 -101298877 + AluJo SINE Alu 9 283 -29 1841 143 0 0 chr9 16563761 16564026 -101298601 - AluSx SINE Alu -5 307 43 1072 90 7 0 chr9 16564064 16564209 -101298418 - Tigger1 DNA MER2_type -808 1610 1465 24 0 0 0 chr9 16564212 16564236 -101298391 + AT_rich Low_complexity Low_complexity 1 24 0 2190 103 14 0 chr9 16564236 16564527 -101298100 - AluY SINE Alu -14 297 3 2355 104 0 0 chr9 16564531 16564828 -101297799 - AluSx SINE Alu -15 297 1 3123 144 52 8 chr9 16564831 16565365 -101297262 - Tigger1 DNA MER2_type -1239 1179 622 459 217 94 29 chr9 16565365 16565503 -101297124 - AluSg/x SINE Alu -35 275 129 907 107 119 36 chr9 16565503 16565671 -101296956 - Tigger1 DNA MER2_type -1816 602 421 252 0 0 0 chr9 16565672 16565699 -101296928 - MSTD LTR MaLR -369 27 1 204 228 18 18 chr9 16565700 16565757 -101296870 + MIR SINE MIR 200 256 -6 712 161 113 32 chr9 16565758 16565882 -101296745 + AluJb SINE Alu 2 135 -177 1383 44 12 0 chr9 16566331 16566491 -101296136 + L1PA7 LINE L1 5991 6152 -2 22 35 0 0 chr9 16567051 16567080 -101295547 + AT_rich Low_complexity Low_complexity 1 29 0 213 312 144 8 chr9 16567685 16567810 -101294817 + L2 LINE L2 2726 2867 -447 240 381 48 0 chr9 16567959 16568064 -101294563 + L2 LINE L2 3163 3272 0 2577 43 0 7 chr9 16568180 16568482 -101294145 - AluY SINE Alu -11 300 1 1019 144 0 0 chr9 16568501 16568654 -101293973 + AluJb SINE Alu 160 312 0 28 0 0 0 chr9 16568654 16568682 -101293945 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chr9 16569240 16569286 -101293341 + (TG)n Simple_repeat Simple_repeat 2 47 0 222 274 113 48 chr9 16570558 16570682 -101291945 + L2 LINE L2 3182 3313 0 2434 51 0 3 chr9 16570993 16571288 -101291339 - AluY SINE Alu -16 295 2 402 343 22 15 chr9 16571445 16571579 -101291048 + MIR3 SINE MIR 53 187 -21 633 238 181 5 chr9 16571708 16571918 -101290709 + MIR SINE MIR 1 247 -15 269 291 12 58 chr9 16572554 16572640 -101289987 + MIR SINE MIR 23 104 -158 24892 47 4 0 chr9 16572655 16576427 -101286200 - L1PA5 LINE L1 -2 6152 2426 33317 60 7 3 chr9 16576528 16580801 -101281826 - L1P LINE L1 -1008 5138 847 719 115 0 0 chr9 16580801 16580897 -101281730 - L1P LINE L1 -6050 96 1 383 310 9 0 chr9 16580908 16581024 -101281603 + MIR SINE MIR 110 226 -36 561 234 72 51 chr9 16581695 16581765 -101280862 - MLT1E LTR MaLR -295 331 264 2133 120 0 3 chr9 16581765 16582065 -101280562 - AluSg SINE Alu -11 299 1 561 234 72 51 chr9 16582065 16582184 -101280443 - MLT1E LTR MaLR -362 264 108 285 217 48 48 chr9 16582693 16582776 -101279851 + MIR SINE MIR 70 152 -110 393 295 124 60 chr9 16582832 16582908 -101279719 + MIR SINE MIR 20 90 -172 2272 100 3 0 chr9 16582908 16583209 -101279418 - AluSp SINE Alu -11 302 1 393 295 124 60 chr9 16583209 16583349 -101279278 + MIR SINE MIR 90 250 -12 2406 61 0 3 chr9 16584318 16584647 -101277980 - AluY SINE Alu 0 328 1 1561 203 0 0 chr9 16585410 16585696 -101276931 + AluJo SINE Alu 5 290 -22 396 184 133 63 chr9 16585772 16585865 -101276762 - L1M4 LINE L1 -1306 4840 4730 1805 182 0 7 chr9 16585865 16586173 -101276454 - AluJb SINE Alu -6 306 1 396 184 133 63 chr9 16586173 16586237 -101276390 - L1M4 LINE L1 -1416 4730 4672 476 248 30 23 chr9 16586250 16586383 -101276244 - L2 LINE L2 0 3313 3180 910 188 134 5 chr9 16586387 16586611 -101276016 + MER110 LTR ERV1 1 253 -238 28 29 0 0 chr9 16587148 16587183 -101275444 + AT_rich Low_complexity Low_complexity 1 35 0 689 160 61 38 chr9 16587187 16587318 -101275309 - AluJo SINE Alu -176 136 3 2512 51 0 0 chr9 16587330 16587625 -101275002 - AluY SINE Alu -16 295 1 634 175 0 33 chr9 16587764 16587884 -101274743 - AluSg/x SINE Alu 0 309 194 1539 153 14 37 chr9 16587951 16588246 -101274381 + AluJb SINE Alu 1 288 -24 180 200 0 0 chr9 16588330 16588375 -101274252 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 53 0 0 chr9 16588796 16588834 -101273793 + AT_rich Low_complexity Low_complexity 1 38 0 2458 50 0 0 chr9 16588834 16589166 -101273461 + AluY SINE Alu 1 332 0 2144 103 0 7 chr9 16589412 16589729 -101272898 + AluSg SINE Alu 1 315 0 298 130 0 37 chr9 16589924 16589978 -101272649 - Alu SINE Alu 0 302 251 9404 85 11 7 chr9 16589980 16591281 -101271346 - L1P LINE L1 -3993 2153 847 735 112 0 0 chr9 16591279 16591377 -101271250 - L1P LINE L1 -6048 98 1 * 383 310 9 0 chr9 16591388 16591504 -101271123 + MIR SINE MIR 110 226 -36 561 234 72 51 chr9 16592175 16592245 -101270382 - MLT1E LTR MaLR -295 331 264 2133 120 0 3 chr9 16592245 16592545 -101270082 - AluSg SINE Alu -11 299 1 561 234 72 51 chr9 16592545 16592664 -101269963 - MLT1E LTR MaLR -362 264 108 285 217 48 48 chr9 16593173 16593256 -101269371 + MIR SINE MIR 70 152 -110 393 295 124 60 chr9 16593312 16593388 -101269239 + MIR SINE MIR 20 90 -172 2272 100 3 0 chr9 16593388 16593689 -101268938 - AluSp SINE Alu -11 302 1 393 295 124 60 chr9 16593689 16593829 -101268798 + MIR SINE MIR 90 250 -12 642 205 186 0 chr9 16595010 16595225 -101267402 + MER5C DNA MER1_type 70 324 0 1286 118 0 27 chr9 16595338 16595524 -101267103 - AluSg/x SINE Alu -9 303 123 641 182 16 8 chr9 16595613 16595734 -101266893 - FLAM_A SINE Alu -11 122 1 3657 196 36 32 chr9 16595804 16596528 -101266099 - L1MB7 LINE L1 -209 5975 5256 1927 161 0 3 chr9 16596528 16596832 -101265795 + AluSx SINE Alu 1 303 -9 3657 196 36 32 chr9 16596832 16597280 -101265347 - L1MB7 LINE L1 -928 5256 4812 1972 114 18 0 chr9 16597280 16597553 -101265074 - AluSg SINE Alu -14 296 19 3657 196 36 32 chr9 16597553 16597912 -101264715 - L1MB7 LINE L1 -1372 4812 4432 1910 155 10 0 chr9 16597912 16598203 -101264424 - AluJo SINE Alu -18 294 1 3657 196 36 32 chr9 16598203 16598279 -101264348 - L1MB7 LINE L1 -1752 4432 4358 2176 110 7 7 chr9 16598373 16598674 -101263953 - AluSp SINE Alu -12 301 1 6403 45 4 32 chr9 16598700 16599536 -101263091 - SVA Other Other 0 1386 575 346 79 175 0 chr9 16600096 16600159 -101262468 + MER34 LTR ERV1 1 74 -468 25 31 0 0 chr9 16600170 16600202 -101262425 + AT_rich Low_complexity Low_complexity 1 32 0 2430 56 0 0 chr9 16600202 16600486 -101262141 - AluSg SINE Alu -26 284 1 4789 224 24 10 chr9 16600487 16601272 -101261355 - L1MB7 LINE L1 -2187 3959 3149 194 0 39 0 chr9 16601272 16601298 -101261329 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4789 224 24 10 chr9 16601298 16601776 -101260851 - L1MB7 LINE L1 -2997 3149 2679 2069 212 50 14 chr9 16601911 16602530 -101260097 + L1MB7 LINE L1 3140 3780 -2366 281 222 81 0 chr9 16602543 16602642 -101259985 - L1M4 LINE L1 -3277 2869 2763 605 205 5 88 chr9 16602650 16602855 -101259772 + L1MB7 LINE L1 3789 3976 -2170 2275 108 0 0 chr9 16602855 16603152 -101259475 + AluSx SINE Alu 1 297 -15 2191 103 14 0 chr9 16603156 16603447 -101259180 + AluY SINE Alu 3 297 -14 24 0 0 0 chr9 16603447 16603471 -101259156 + AT_rich Low_complexity Low_complexity 1 24 0 994 90 7 0 chr9 16603474 16603619 -101259008 + Tigger1 DNA MER2_type 1465 1610 -808 1364 163 18 0 chr9 16603657 16603878 -101258749 + AluSx SINE Alu 43 267 -45 1716 163 4 4 chr9 16603978 16604255 -101258372 - AluSc SINE Alu -32 277 1 2351 119 3 0 chr9 16604360 16604672 -101257955 - AluSq SINE Alu 0 313 1 227 217 0 0 chr9 16604678 16604724 -101257903 - L2 LINE L2 0 3272 3227 338 265 147 15 chr9 16604998 16605134 -101257493 - MIR SINE MIR -50 212 59 210 191 24 0 chr9 16605311 16605353 -101257274 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1539 272 116 60 chr9 16606351 16607278 -101255349 + HAL1 LINE L1 64 937 -1570 2024 143 3 3 chr9 16607278 16607585 -101255042 + AluSq SINE Alu 1 307 -6 1539 272 116 60 chr9 16607585 16607707 -101254920 + HAL1 LINE L1 937 1051 -1456 2464 62 0 0 chr9 16607707 16608015 -101254612 - AluY SINE Alu -3 308 1 1539 272 116 60 chr9 16608015 16608090 -101254537 + HAL1 LINE L1 1051 1253 -1254 625 255 205 20 chr9 16608115 16608315 -101254312 - MIR SINE MIR -25 237 1 1638 121 34 1 chr9 16608523 16608979 -101253648 + L1P4 LINE L1 5026 5492 -669 2664 43 0 0 chr9 16608979 16609281 -101253346 + AluY SINE Alu 1 302 -9 4727 197 36 32 chr9 16609283 16609597 -101253030 + L1MB7 LINE L1 4119 4430 -1754 1910 155 10 0 chr9 16609597 16609888 -101252739 + AluJo SINE Alu 1 294 -18 4727 197 36 32 chr9 16609888 16610247 -101252380 + L1MB7 LINE L1 4430 4786 -1398 1981 113 18 0 chr9 16610247 16610521 -101252106 + AluSg SINE Alu 19 297 -13 4727 197 36 32 chr9 16610521 16610969 -101251658 + L1MB7 LINE L1 4786 5231 -953 1846 168 3 3 chr9 16610969 16611272 -101251355 - AluSx SINE Alu -9 303 1 4727 197 36 32 chr9 16611272 16611955 -101250672 + L1MB7 LINE L1 5231 5933 -251 7385 36 0 2 chr9 16612056 16613603 -101249024 + L1PA3 LINE L1 4609 6154 -1 46 54 0 0 chr9 16613624 16613698 -101248929 + AT_rich Low_complexity Low_complexity 1 74 0 404 348 122 36 chr9 16613699 16614035 -101248592 - HAL1 LINE L1 -1778 729 365 2159 156 38 7 chr9 16614057 16614474 -101248153 - L1MB8 LINE L1 -11 6167 5738 1028 148 28 12 chr9 16614474 16614694 -101247933 - MLT2A2 LTR ERVL 0 453 295 414 189 11 0 chr9 16614700 16614790 -101247837 - L1MB8 LINE L1 -782 5392 5302 1850 116 30 7 chr9 16614818 16615120 -101247507 - MLT2A2 LTR ERVL -144 309 1 2155 172 11 18 chr9 16615122 16615564 -101247063 - L1M4 LINE L1 -438 5740 5302 2041 154 0 3 chr9 16615882 16616187 -101246440 + AluJb SINE Alu 1 304 -8 2319 119 0 0 chr9 16616389 16616701 -101245926 + AluSx SINE Alu 1 312 0 202 292 150 0 chr9 16617027 16617140 -101245487 - MIR SINE MIR -56 206 77 956 35 28 14 chr9 16617428 16617569 -101245058 + (TTTC)n Simple_repeat Simple_repeat 2 144 0 789 157 0 0 chr9 16617576 16617691 -101244936 - FLAM_A SINE Alu -18 115 1 235 71 48 0 chr9 16618316 16618358 -101244269 + CT-rich Low_complexity Low_complexity 1 44 0 1013 186 0 17 chr9 16618861 16619038 -101243589 + FAM SINE Alu 1 174 -1 291 282 13 0 chr9 16619243 16619321 -101243306 + L2 LINE L2 3221 3299 -14 1604 36 5 0 chr9 16619553 16619745 -101242882 - L1PA3 LINE L1 -2 6153 5961 194 345 134 8 chr9 16621332 16621451 -101241176 - MIR3 SINE MIR -54 154 21 30221 38 5 0 chr9 16621829 16626472 -101236155 - L1PA4 LINE L1 0 6155 1497 2725 126 36 2 chr9 16626853 16627267 -101235360 + MSTA LTR MaLR 1 428 0 440 234 0 0 chr9 16627267 16627361 -101235266 - HAL1 LINE L1 -1633 874 781 294 291 98 56 chr9 16627393 16627771 -101234856 - HAL1 LINE L1 -1813 694 278 1860 185 22 16 chr9 16627771 16628134 -101234493 + MLT1A1 LTR MaLR 1 365 0 294 291 98 56 chr9 16628134 16628376 -101234251 - HAL1 LINE L1 -2229 278 48 978 227 38 0 chr9 16628952 16629190 -101233437 - L1M4 LINE L1 -487 5691 5445 1285 120 34 4 chr9 16629190 16629424 -101233203 - MER6 DNA MER2_type -4 861 621 2339 87 3 7 chr9 16629441 16629750 -101232877 - AluSg SINE Alu 0 310 3 285 133 0 3 chr9 16629753 16629811 -101232816 - L1M4 LINE L1 -745 5429 5373 * 1474 218 31 6 chr9 16629810 16630163 -101232464 - L1M4 LINE L1 -5595 947 586 915 236 3 76 chr9 16630180 16630510 -101232117 - L1M4 LINE L1 -6202 340 35 410 286 9 0 chr9 16630661 16630766 -101231861 - HAL1 LINE L1 -1667 840 735 361 260 174 21 chr9 16630790 16631163 -101231464 + L1M4 LINE L1 3430 3859 -2287 1703 174 13 7 chr9 16631707 16631873 -101230754 - AluJb SINE Alu -11 301 131 2279 114 0 3 chr9 16631873 16632181 -101230446 - AluSx SINE Alu -5 307 1 1703 174 13 7 chr9 16632181 16632313 -101230314 - AluJb SINE Alu -181 131 1 36 53 0 0 chr9 16632351 16632408 -101230219 + AT_rich Low_complexity Low_complexity 1 57 0 1326 105 0 20 chr9 16632770 16632970 -101229657 - MSTA LTR MaLR 0 428 233 1934 123 15 9 chr9 16632971 16633303 -101229324 - L1P3 LINE L1 -4844 1617 1284 1290 76 0 0 chr9 16633309 16633467 -101229160 - AluY SINE Alu -15 296 139 794 190 6 49 chr9 16633591 16633754 -101228873 - AluJb SINE Alu -20 292 137 183 42 0 0 chr9 16633756 16633780 -101228847 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2329 63 0 3 chr9 16633780 16634064 -101228563 - AluY SINE Alu -28 283 1 6819 136 27 32 chr9 16634074 16635350 -101227277 - L1P3 LINE L1 -5183 1278 10 12111 137 26 22 chr9 16635368 16637354 -101225273 + Tigger1 DNA MER2_type 221 2218 -200 2087 139 0 3 chr9 16637354 16637655 -101224972 - AluSx SINE Alu -12 300 1 12111 137 26 22 chr9 16637655 16637856 -101224771 + Tigger1 DNA MER2_type 2218 2417 -1 4865 114 6 1 chr9 16637972 16638682 -101223945 + L1PA13 LINE L1 5447 6159 -4 288 0 0 0 chr9 16639864 16639896 -101222731 + (CA)n Simple_repeat Simple_repeat 1 32 0 1033 195 5 15 chr9 16640662 16640862 -101221765 + AluJb SINE Alu 97 294 -18 2276 98 0 22 chr9 16640910 16641227 -101221400 - AluSx SINE Alu -2 310 1 873 150 0 0 chr9 16641424 16641564 -101221063 + FLAM_C SINE Alu 1 140 -3 21 57 0 0 chr9 16641740 16641775 -101220852 + AT_rich Low_complexity Low_complexity 1 35 0 2224 115 0 13 chr9 16641776 16642088 -101220539 - AluSg SINE Alu -2 308 1 1045 84 0 56 chr9 16642089 16642232 -101220395 - AluSq/x SINE Alu -178 135 1 200 279 0 0 chr9 16642453 16642496 -101220131 + MIR SINE MIR 88 130 -78 2028 121 6 32 chr9 16642803 16643117 -101219510 - AluJo SINE Alu -6 306 1 790 147 60 106 chr9 16643217 16643435 -101219192 + Charlie4 DNA MER1_type 1 208 -1753 2252 113 0 0 chr9 16643457 16643749 -101218878 + AluSx SINE Alu 5 296 -16 297 0 0 0 chr9 16643781 16643814 -101218813 + (TG)n Simple_repeat Simple_repeat 2 34 0 1658 184 3 17 chr9 16643847 16644141 -101218486 - AluJo SINE Alu -22 290 1 406 291 95 1 chr9 16645263 16645611 -101217016 - LTR33A LTR ERVL -13 510 84 1809 155 40 0 chr9 16645882 16646061 -101216566 - AluJb SINE Alu -4 308 111 387 0 0 0 chr9 16646061 16646104 -101216523 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1809 155 40 0 chr9 16646104 16646220 -101216407 - AluJb SINE Alu -201 111 1 23 0 0 0 chr9 16646370 16646393 -101216234 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 16647206 16647227 -101215400 + AT_rich Low_complexity Low_complexity 1 21 0 692 205 25 12 chr9 16647284 16647495 -101215132 - L1ME3A LINE L1 -160 6002 5774 949 173 85 8 chr9 16647599 16647847 -101214780 - L1ME3A LINE L1 -218 5952 5686 2403 147 18 20 chr9 16647911 16648751 -101213876 + L1PB1 LINE L1 4769 5600 -551 10141 67 7 4 chr9 16648751 16650856 -101211771 + L1PA7 LINE L1 4047 6154 0 3485 91 40 22 chr9 16650856 16651048 -101211579 + L1PB1 LINE L1 5593 5780 -371 2336 74 17 0 chr9 16651048 16651344 -101211283 + AluSc SINE Alu 1 301 -8 3485 91 40 22 chr9 16651344 16651698 -101210929 + L1PB1 LINE L1 5780 6150 -1 2353 63 0 10 chr9 16651781 16652081 -101210546 - AluSg1 SINE Alu -11 298 2 1448 169 116 11 chr9 16652171 16652533 -101210094 - MER39 LTR ERV1 0 707 308 388 220 105 55 chr9 16652528 16652693 -101209934 - MER39 LTR ERV1 -377 165 4 * 281 255 49 29 chr9 16652743 16652845 -101209782 - MIR3 SINE MIR -16 192 89 2766 237 23 34 chr9 16652845 16653623 -101209004 + L1ME2 LINE L1 5327 6097 -67 1923 160 7 0 chr9 16653623 16653910 -101208717 + AluSx SINE Alu 13 301 -11 2766 237 23 34 chr9 16653910 16653965 -101208662 + L1ME2 LINE L1 6097 6151 -13 239 258 0 0 chr9 16654000 16654062 -101208565 + L1MC4 LINE L1 7826 7887 -155 221 235 0 0 chr9 16654074 16654125 -101208502 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 308 282 10 0 chr9 16654128 16654231 -101208396 + L1MC4 LINE L1 7924 8027 -15 1350 253 122 78 chr9 16654281 16654736 -101207891 + HAL1 LINE L1 100 534 -1973 1654 178 10 27 chr9 16654736 16655028 -101207599 - AluJo SINE Alu -25 287 1 1350 253 122 78 chr9 16655028 16655130 -101207497 + HAL1 LINE L1 534 630 -1877 2149 118 48 25 chr9 16655130 16655486 -101207141 + THE1B LTR MaLR 1 364 0 1350 253 122 78 chr9 16655486 16655870 -101206757 + HAL1 LINE L1 630 1083 -1424 2122 116 3 0 chr9 16655870 16656155 -101206472 + AluSg SINE Alu 1 286 -24 30699 61 4 1 chr9 16656763 16660909 -101201718 - L1P LINE L1 -1980 4166 7 2311 105 0 7 chr9 16662260 16662566 -101200061 - AluSx SINE Alu -8 304 1 2104 79 0 34 chr9 16662574 16662866 -101199761 - AluY SINE Alu -3 308 27 6552 73 21 12 chr9 16662866 16663939 -101198688 - L1PA10 LINE L1 -14 6154 5074 1515 186 76 3 chr9 16664515 16664806 -101197821 - AluJo SINE Alu 0 312 1 2184 93 6 35 chr9 16665007 16665320 -101197307 + AluSg SINE Alu 1 304 -6 1524 137 90 13 chr9 16665543 16665843 -101196784 - MER44D DNA MER2_type -10 599 7 344 296 53 8 chr9 16665859 16665991 -101196636 - L1ME LINE L1 -400 5762 5625 2002 151 0 3 chr9 16667069 16667374 -101195253 - AluJb SINE Alu -8 304 1 232 319 35 35 chr9 16667410 16667487 -101195140 - L1ME LINE L1 -335 5835 5756 2573 145 31 0 chr9 16667487 16667902 -101194725 - MSTC LTR MaLR 0 428 1 232 319 35 35 chr9 16667902 16667965 -101194662 - L1ME LINE L1 -413 5757 5695 244 239 220 37 chr9 16668009 16668227 -101194400 - L1ME LINE L1 -577 5585 5328 22156 54 2 2 chr9 16668495 16672135 -101190492 - L1PA5 LINE L1 -7 6147 2508 41524 45 2 2 chr9 16672212 16677813 -101184814 + L1P1 LINE L1 1 5605 -550 323 344 40 20 chr9 16678868 16679019 -101183608 - MIR SINE MIR -56 206 53 309 248 10 69 chr9 16679212 16679313 -101183314 - MIR SINE MIR -167 95 1 1628 122 37 1 chr9 16679523 16679978 -101182649 + L1P4 LINE L1 5026 5492 -669 2522 56 0 0 chr9 16679978 16680280 -101182347 + AluY SINE Alu 1 302 -9 1091 154 27 23 chr9 16680282 16680542 -101182085 + L1MC/D LINE L1 4119 4379 -1767 802 146 0 0 chr9 16680543 16680673 -101181954 + AluSc SINE Alu 180 309 0 1552 50 0 0 chr9 16681019 16681199 -101181428 + AluY SINE Alu 121 300 -11 856 126 0 0 chr9 16681200 16681335 -101181292 - L1MA4 LINE L1 -384 5916 5782 646 196 0 0 chr9 16681379 16681491 -101181136 - FLAM_A SINE Alu -10 132 21 1039 134 6 0 chr9 16681508 16681680 -101180947 - L1MA4 LINE L1 -518 5785 5613 2041 111 3 3 chr9 16681680 16682004 -101180623 - pTR5 LTR ERV1 -2049 389 66 372 188 30 20 chr9 16682004 16682105 -101180522 - LTR30 LTR ERV1 -80 642 541 741 129 190 18 chr9 16682106 16682269 -101180358 - pTR5 LTR ERV1 -417 2021 1831 2165 105 0 10 chr9 16682557 16682861 -101179766 - AluY SINE Alu -10 301 1 1325 224 58 26 chr9 16683568 16684037 -101178590 + HAL1 LINE L1 1069 1552 -955 1250 205 3 41 chr9 16684215 16684268 -101178359 + L1MC/D LINE L1 4616 4669 -1477 2162 131 0 0 chr9 16684268 16684558 -101178069 + AluSx SINE Alu 1 290 -22 1250 205 3 41 chr9 16684558 16684846 -101177781 + L1MC/D LINE L1 4669 4944 -1202 264 148 0 0 chr9 16684863 16684917 -101177710 + Alu SINE Alu 248 301 -1 639 228 49 11 chr9 16684917 16685134 -101177493 + L1MB8 LINE L1 5960 6178 0 578 282 111 28 chr9 16685561 16686114 -101176513 + L1MC/D LINE L1 5215 5818 -751 25 51 0 0 chr9 16686328 16686367 -101176260 + AT_rich Low_complexity Low_complexity 1 39 0 243 88 0 0 chr9 16686386 16686420 -101176207 + (TA)n Simple_repeat Simple_repeat 1 34 0 1704 181 17 3 chr9 16686526 16686814 -101175813 - AluJb SINE Alu -20 292 1 2146 120 0 7 chr9 16686934 16687246 -101175381 + AluSx SINE Alu 1 312 0 432 303 197 67 chr9 16687397 16687935 -101174692 + L2 LINE L2 1706 2313 -1001 233 246 18 0 chr9 16687943 16688000 -101174627 - L2 LINE L2 0 3272 3215 206 289 42 127 chr9 16688150 16688225 -101174402 + L2 LINE L2 2424 2504 -810 234 91 0 0 chr9 16688225 16688258 -101174369 + (CAATC)n Simple_repeat Simple_repeat 3 35 0 206 289 42 127 chr9 16688258 16688442 -101174185 + L2 LINE L2 2504 2661 -653 702 211 40 7 chr9 16688485 16688637 -101173990 + MIR SINE MIR 99 255 -7 21 0 0 0 chr9 16689477 16689498 -101173129 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr9 16690376 16690415 -101172212 + AT_rich Low_complexity Low_complexity 1 39 0 945 316 66 9 chr9 16690589 16691042 -101171585 + LTR33 LTR ERVL 23 501 -20 1651 124 25 0 chr9 16691159 16691433 -101171194 - Tigger1 DNA MER2_type -60 2358 2078 1003 158 37 23 chr9 16691467 16691682 -101170945 - L1MA4A LINE L1 -16 6287 6070 30 0 0 0 chr9 16694597 16694627 -101168000 + AT_rich Low_complexity Low_complexity 1 30 0 602 220 0 0 chr9 16694963 16695072 -101167555 + FLAM_A SINE Alu 14 122 -20 277 269 0 0 chr9 16695599 16695666 -101166961 + L2 LINE L2 2634 2700 -614 1160 156 60 39 chr9 16695674 16695801 -101166826 + L1MA9 LINE L1 6021 6144 -168 270 0 0 0 chr9 16695801 16695831 -101166796 + (CA)n Simple_repeat Simple_repeat 2 31 0 1160 156 60 39 chr9 16695831 16695985 -101166642 + L1MA9 LINE L1 6144 6308 -4 758 311 78 14 chr9 16696003 16696347 -101166280 + L2 LINE L2 2702 3063 -250 6686 44 0 0 chr9 16696356 16697169 -101165458 + L1PA5 LINE L1 5342 6154 0 631 216 110 5 chr9 16697175 16697456 -101165171 - L1M4 LINE L1 -699 5475 5173 1817 116 44 44 chr9 16697488 16697851 -101164776 - L1MA4A LINE L1 -5 6298 5936 2225 105 3 0 chr9 16697877 16698171 -101164456 - AluSx SINE Alu -17 295 1 773 140 0 91 chr9 16698176 16698319 -101164308 - FLAM_C SINE Alu -3 130 1 1733 96 16 8 chr9 16698319 16698569 -101164058 - L1MA4A LINE L1 -353 5950 5699 225 0 0 0 chr9 16698588 16698613 -101164014 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 277 335 42 108 chr9 16699507 16699633 -101162994 + MIR SINE MIR 11 125 -137 2340 103 0 0 chr9 16699633 16699934 -101162693 - AluSx SINE Alu -11 301 1 277 335 42 108 chr9 16699934 16699974 -101162653 + MIR SINE MIR 125 166 -96 351 273 76 58 chr9 16701661 16701833 -101160794 - MIR3 SINE MIR -1 207 33 25 65 0 0 chr9 16703637 16703683 -101158944 + AT_rich Low_complexity Low_complexity 1 46 0 29 0 0 0 chr9 16704267 16704296 -101158331 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr9 16704839 16704869 -101157758 + AT_rich Low_complexity Low_complexity 1 30 0 3086 230 51 25 chr9 16705055 16705122 -101157505 - L1ME2 LINE L1 -12 6152 6088 1821 127 22 9 chr9 16705122 16705446 -101157181 - L1MA4A LINE L1 -8 6295 5968 3086 230 51 25 chr9 16705446 16706657 -101155970 - L1ME2 LINE L1 -76 6088 4842 2901 211 54 33 chr9 16706658 16707913 -101154714 - L1MC4 LINE L1 -748 5398 4690 1613 180 10 23 chr9 16707958 16708258 -101154369 - AluJb SINE Alu -16 296 1 2158 100 0 33 chr9 16708438 16708739 -101153888 + AluSp SINE Alu 1 291 -22 1787 176 14 0 chr9 16708844 16709134 -101153493 - AluJb SINE Alu -18 294 1 2100 128 0 0 chr9 16710408 16710690 -101151937 - AluSx SINE Alu -26 286 5 22 35 0 0 chr9 16712192 16712221 -101150406 + AT_rich Low_complexity Low_complexity 1 29 0 500 197 88 27 chr9 16712397 16712544 -101150083 - L1MC5 LINE L1 -48 7913 7758 24 77 0 0 chr9 16712660 16712712 -101149915 + AT_rich Low_complexity Low_complexity 1 52 0 213 179 0 0 chr9 16712831 16712862 -101149765 + CT-rich Low_complexity Low_complexity 1 34 -5 2065 98 25 3 chr9 16712862 16713147 -101149480 - AluY SINE Alu -20 291 1 1988 128 7 3 chr9 16713155 16713443 -101149184 - AluSx SINE Alu -23 289 1 417 233 41 0 chr9 16713448 16713594 -101149033 - L1MC5 LINE L1 -466 7495 7344 574 198 98 11 chr9 16713594 16713770 -101148857 + MER3 DNA MER1_type 12 150 -59 540 202 18 0 chr9 16714141 16714250 -101148377 - MLT2B1 LTR ERVL -6 622 512 431 192 13 0 chr9 16714278 16714356 -101148271 - Tigger5 DNA MER2_type -2244 79 1 635 200 60 0 chr9 16714368 16714518 -101148109 - ERVL LTR ERVL -387 5377 5219 1115 234 174 30 chr9 16714521 16714855 -101147772 - MLT2B1 LTR ERVL -138 382 1 691 134 8 8 chr9 16714855 16714974 -101147653 - L1MB2 LINE L1 -163 6008 5890 2910 259 33 10 chr9 16714974 16716276 -101146351 - ERVL LTR ERVL -1161 4603 3238 4603 268 41 37 chr9 16716294 16717798 -101144829 - ERVL LTR ERVL -2947 2817 1308 243 196 36 0 chr9 16718578 16718634 -101143993 - MLT2B2 LTR ERVL -457 58 1 421 167 24 0 chr9 16718634 16718718 -101143909 - L1MB2 LINE L1 -163 6008 5923 2132 165 58 5 chr9 16719086 16719462 -101143165 - MSTD LTR MaLR 0 396 1 15721 168 51 3 chr9 16719465 16721885 -101140742 + L1M1 LINE L1 16 2566 -4999 276 30 0 0 chr9 16721885 16721918 -101140709 + (GA)n Simple_repeat Simple_repeat 1 33 0 15721 168 51 3 chr9 16721918 16722052 -101140575 + L1M1 LINE L1 2566 2692 -4873 379 365 76 0 chr9 16722812 16722957 -101139670 + L2 LINE L2 3117 3272 0 22 0 0 0 chr9 16723026 16723048 -101139579 + AT_rich Low_complexity Low_complexity 1 22 0 927 59 0 0 chr9 16723169 16723288 -101139339 - L1PA5 LINE L1 -7 6147 6029 33684 71 3 3 chr9 16723388 16727799 -101134828 - L1P LINE L1 -1726 4420 11 3216 179 26 17 chr9 16727809 16728506 -101134121 + L1MB7 LINE L1 5463 6165 -19 505 85 0 0 chr9 16728909 16728991 -101133636 + L1PB1 LINE L1 6066 6147 -4 249 277 0 0 chr9 16729695 16729778 -101132849 - L1MC4 LINE L1 -1339 6703 6621 241 284 23 0 chr9 16729699 16729787 -101132840 + L1MC4 LINE L1 6614 6703 -1339 * 2125 126 10 0 chr9 16729890 16730184 -101132443 - AluSx SINE Alu -15 297 1 242 300 0 0 chr9 16732018 16732068 -101130559 - L2 LINE L2 -16 3256 3207 21 71 0 0 chr9 16733365 16733407 -101129220 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 16733553 16733574 -101129053 + AT_rich Low_complexity Low_complexity 1 21 0 3437 27 2 0 chr9 16734007 16734411 -101128216 + L1PA3 LINE L1 5565 5969 -186 1133 177 20 15 chr9 16734551 16734754 -101127873 - AluJb SINE Alu -22 290 87 1478 186 7 62 chr9 16734757 16735083 -101127544 - L1M4 LINE L1 -1082 5064 4763 1452 179 52 34 chr9 16735083 16735374 -101127253 - AluSx SINE Alu -16 296 1 1478 186 7 62 chr9 16735374 16735450 -101127177 - L1M4 LINE L1 -1383 4763 4684 1641 179 0 11 chr9 16735796 16736075 -101126552 - AluJb SINE Alu -36 276 1 729 223 34 39 chr9 16736162 16736395 -101126232 - L1MC5 LINE L1 -36 7925 7694 511 216 108 0 chr9 16736427 16736538 -101126089 - FLAM_C SINE Alu -20 123 1 262 161 62 12 chr9 16736552 16736633 -101125994 - L1MC5 LINE L1 -267 7694 7610 1366 100 0 0 chr9 16737297 16737487 -101125140 + L1P LINE L1 1 190 -5956 2662 42 12 0 chr9 16737494 16737825 -101124802 + L1PA4 LINE L1 5821 6155 0 22 35 0 0 chr9 16737849 16737878 -101124749 + AT_rich Low_complexity Low_complexity 1 29 0 3426 221 3 43 chr9 16738176 16738671 -101123956 + L1ME1 LINE L1 5126 5639 -527 2382 76 0 10 chr9 16738671 16738974 -101123653 + AluY SINE Alu 1 300 -11 3426 221 3 43 chr9 16738974 16739565 -101123062 + L1ME1 LINE L1 5639 6161 -5 250 309 0 0 chr9 16740029 16740084 -101122543 + Cheshire DNA MER1_type 2 56 -2364 287 197 127 0 chr9 16740087 16740158 -101122469 + Cheshire DNA MER1_type 210 289 -2131 196 365 144 0 chr9 16740240 16740344 -101122283 - L2 LINE L2 -18 3295 3177 938 178 168 0 chr9 16740537 16740728 -101121899 + MER58A DNA MER1_type 2 224 0 268 333 89 22 chr9 16740801 16741026 -101121601 - L2 LINE L2 -439 2875 2636 2474 176 72 9 chr9 16741086 16741547 -101121080 + MLT1D LTR MaLR 8 497 -8 4323 117 10 41 chr9 16742955 16743633 -101118994 - L1PA16 LINE L1 -9 6157 5500 2436 60 0 0 chr9 16743633 16743934 -101118693 + AluY SINE Alu 2 302 -9 4323 117 10 41 chr9 16743934 16743967 -101118660 - L1PA16 LINE L1 -666 5500 5468 2071 121 0 0 chr9 16744630 16744911 -101117716 + AluSx SINE Alu 2 282 -30 305 318 27 9 chr9 16745211 16745321 -101117306 + L2 LINE L2 3197 3308 -5 2020 119 0 18 chr9 16745328 16745659 -101116968 + AluSx SINE Alu 1 326 0 316 314 13 85 chr9 16745659 16745812 -101116815 - MIR SINE MIR -65 197 56 249 211 42 0 chr9 16746102 16746173 -101116454 - L1MC4a LINE L1 -1860 5948 5875 2524 67 0 3 chr9 16746228 16746540 -101116087 - AluY SINE Alu 0 311 1 1940 138 16 3 chr9 16746568 16746888 -101115739 + L1PB4 LINE L1 5814 6137 -19 1792 180 0 0 chr9 16746888 16747183 -101115444 - AluJb SINE Alu -17 295 1 219 36 0 0 chr9 16747202 16747230 -101115397 + (CA)n Simple_repeat Simple_repeat 2 29 0 2075 75 4 4 chr9 16747324 16747590 -101115037 - AluSp SINE Alu -4 309 44 398 141 81 30 chr9 16747621 16747720 -101114907 - L1MC5 LINE L1 -50 7911 7808 23 0 0 0 chr9 16747757 16747780 -101114847 + AT_rich Low_complexity Low_complexity 1 23 0 * 830 167 13 20 chr9 16747758 16747908 -101114719 - FRAM SINE Alu -10 166 18 309 185 15 0 chr9 16747911 16747976 -101114651 - L1MC5 LINE L1 -171 7790 7725 1925 162 0 7 chr9 16748133 16748423 -101114204 + AluJo SINE Alu 1 288 -24 25 0 0 0 chr9 16748430 16748455 -101114172 + AT_rich Low_complexity Low_complexity 1 25 0 1104 143 0 12 chr9 16749253 16749414 -101113213 + AluJo SINE Alu 79 237 -75 283 256 250 0 chr9 16749534 16749698 -101112929 - MIR SINE MIR 0 262 58 446 270 25 45 chr9 16749908 16749998 -101112629 - MER113 DNA MER1_type? -310 211 121 2245 108 0 0 chr9 16749998 16750295 -101112332 + AluSx SINE Alu 1 297 -15 446 270 25 45 chr9 16750295 16750404 -101112223 - MER113 DNA MER1_type? -400 121 16 563 329 98 11 chr9 16750655 16750941 -101111686 + L3 LINE CR1 1257 1567 -10 23 0 0 0 chr9 16751191 16751214 -101111413 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr9 16751451 16751473 -101111154 + AT_rich Low_complexity Low_complexity 1 22 0 1615 143 0 7 chr9 16751961 16752240 -101110387 - L1MA4 LINE L1 0 6300 6024 204 40 0 0 chr9 16752587 16752612 -101110015 + (A)n Simple_repeat Simple_repeat 1 25 0 762 233 95 38 chr9 16752990 16753307 -101109320 - HAL1 LINE L1 -6 2501 2167 246 219 355 7 chr9 16753338 16753493 -101109134 + L2 LINE L2 3097 3305 -8 412 192 0 5 chr9 16753495 16753585 -101109042 + AluJ/FLAM SINE Alu 1 72 -230 926 188 0 0 chr9 16753588 16753748 -101108879 + AluJo/FRAM SINE Alu 145 304 -8 296 242 32 32 chr9 16753866 16753961 -101108666 - HAL1 LINE L1 -548 1959 1865 30812 77 4 10 chr9 16753982 16759074 -101103553 - L1PA6 LINE L1 -2 6467 1408 632 170 0 0 chr9 16759057 16759163 -101103464 - L1PA6 LINE L1 -6351 110 5 * 668 247 104 91 chr9 16759170 16759926 -101102701 - HAL1 LINE L1 -638 1869 1104 229 300 0 12 chr9 16760345 16760425 -101102202 + (TA)n Simple_repeat Simple_repeat 2 80 0 183 80 0 0 chr9 16760442 16760467 -101102160 + (CA)n Simple_repeat Simple_repeat 2 26 0 479 93 0 13 chr9 16760487 16760562 -101102065 + (TA)n Simple_repeat Simple_repeat 1 74 0 1723 191 0 3 chr9 16760563 16760846 -101101781 - AluJo SINE Alu -30 282 1 1476 201 10 7 chr9 16762187 16762475 -101100152 - AluJo SINE Alu -15 297 9 221 167 0 0 chr9 16764894 16764930 -101097697 - MIR3 SINE MIR -22 186 151 21 36 0 0 chr9 16764989 16765017 -101097610 + AT_rich Low_complexity Low_complexity 1 28 0 578 134 67 45 chr9 16765094 16765228 -101097399 - L1MA5A LINE L1 -1 6296 6160 22 35 0 0 chr9 16767151 16767180 -101095447 + AT_rich Low_complexity Low_complexity 1 29 0 1674 175 3 30 chr9 16767999 16768302 -101094325 + AluJb SINE Alu 3 297 -15 22 0 0 0 chr9 16768525 16768547 -101094080 + AT_rich Low_complexity Low_complexity 1 22 0 435 262 86 27 chr9 16768884 16769071 -101093556 + MIR SINE MIR 7 204 -58 902 85 0 0 chr9 16769072 16769190 -101093437 + AluY SINE Alu 187 304 -7 6274 216 33 34 chr9 16769215 16769965 -101092662 + L1M4 LINE L1 2280 3029 -3117 773 173 0 8 chr9 16769965 16770092 -101092535 + FLAM_A SINE Alu 4 129 -4 6274 216 33 34 chr9 16770092 16770496 -101092131 + L1M4 LINE L1 3029 3432 -2714 2222 115 3 0 chr9 16770496 16770800 -101091827 + AluSg SINE Alu 5 309 -1 6274 216 33 34 chr9 16770800 16771445 -101091182 + L1M4 LINE L1 3432 4078 -2068 25 75 0 0 chr9 16771642 16771695 -101090932 + AT_rich Low_complexity Low_complexity 1 53 0 884 156 7 7 chr9 16772296 16772450 -101090177 - L1M4 LINE L1 -527 5638 5481 21 36 0 0 chr9 16773296 16773324 -101089303 + AT_rich Low_complexity Low_complexity 1 28 0 234 299 0 45 chr9 16773357 16773424 -101089203 - L2 LINE L2 -5 3267 3204 207 293 159 57 chr9 16773442 16773599 -101089028 - L2 LINE L2 -1 3312 3140 484 269 103 13 chr9 16773962 16774118 -101088509 + MIR SINE MIR 77 246 -16 2178 115 0 0 chr9 16774234 16774530 -101088097 - AluY SINE Alu -15 296 1 797 295 48 47 chr9 16774633 16774945 -101087682 - L1M4 LINE L1 -1092 5054 4744 1955 139 0 17 chr9 16774945 16775233 -101087394 - AluSx SINE Alu -29 283 1 797 295 48 47 chr9 16775233 16775606 -101087021 - L1M4 LINE L1 -1402 4744 4333 2423 170 19 19 chr9 16775606 16776083 -101086544 - L1MB5 LINE L1 -2 6172 5696 797 295 48 47 chr9 16776083 16776400 -101086227 - L1M4 LINE L1 -1813 4333 4018 638 216 15 22 chr9 16777296 16777430 -101085197 - FLAM_A SINE Alu 0 133 1 594 182 0 0 chr9 16777577 16777676 -101084951 - AluJ/FLAM SINE Alu -213 99 1 1850 162 3 19 chr9 16777751 16778065 -101084562 - AluJo SINE Alu 0 312 4 34026 91 24 43 chr9 16781231 16787503 -101075124 + L1PA6 LINE L1 11 6154 0 444 313 49 6 chr9 16788874 16789064 -101073563 + MIR SINE MIR 57 253 -9 795 212 40 54 chr9 16789237 16789459 -101073168 + MIR SINE MIR 44 262 0 2985 159 31 65 chr9 16789904 16790577 -101072050 + L1MB8 LINE L1 5524 6173 -5 323 235 0 35 chr9 16790622 16790707 -101071920 - MLT1L LTR MaLR -338 277 196 2401 90 10 67 chr9 16790969 16791279 -101071348 - L1PA16 LINE L1 0 6166 5840 1859 154 39 39 chr9 16791279 16791635 -101070992 + THE1B LTR MaLR 5 360 -4 11456 81 13 16 chr9 16791643 16793227 -101069400 + THE1B-int LTR MaLR 1 1580 0 2021 143 48 28 chr9 16793227 16793584 -101069043 + THE1B LTR MaLR 1 364 0 2401 90 10 67 chr9 16793584 16793652 -101068975 - L1PA16 LINE L1 -331 5835 5800 213 103 0 77 chr9 16793700 16793739 -101068888 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 1586 199 85 16 chr9 16793948 16794325 -101068302 - L1MC4 LINE L1 -198 7844 7442 370 282 15 8 chr9 16794337 16794468 -101068159 - L1ME4a LINE L1 -218 5903 5772 519 236 115 7 chr9 16795011 16795159 -101067468 + MIR SINE MIR 1 164 -98 507 206 194 0 chr9 16796045 16796192 -101066435 + MER5A DNA MER1_type 4 183 -6 34 42 0 0 chr9 16796204 16796252 -101066375 + AT_rich Low_complexity Low_complexity 1 48 0 543 236 120 54 chr9 16797253 16797494 -101065133 - L1ME1 LINE L1 -7 6159 5903 1000 255 48 131 chr9 16797516 16798235 -101064392 - MER21B LTR ERV1 -193 670 35 1202 236 14 7 chr9 16798258 16798555 -101064072 - L1ME1 LINE L1 -251 5913 5615 3617 250 87 83 chr9 16798605 16800297 -101062330 - L2 LINE L2 -327 2986 1288 454 261 62 8 chr9 16800304 16800434 -101062193 - L2 LINE L2 -2139 1175 1039 2192 226 37 31 chr9 16800434 16800920 -101061707 + LTR40a LTR ERVL 1 489 -30 575 152 0 22 chr9 16800922 16801014 -101061613 - FRAM/FAM SINE Alu -93 83 1 1011 210 77 55 chr9 16801028 16801239 -101061388 + Charlie2 DNA MER1_type 2433 2657 -205 1783 173 0 31 chr9 16801239 16801557 -101061070 - AluJo SINE Alu -2 310 3 1011 210 77 55 chr9 16801557 16801711 -101060916 + Charlie2 DNA MER1_type 2657 2806 -56 2000 211 57 39 chr9 16801711 16802205 -101060422 - MLT1D LTR MaLR -2 503 1 598 182 0 0 chr9 16802390 16802500 -101060127 - AluSq/x SINE Alu -202 110 1 378 330 162 38 chr9 16802517 16802944 -101059683 + L2 LINE L2 2175 2654 -660 258 237 13 26 chr9 16803236 16803312 -101059315 + MIR SINE MIR 138 212 -50 906 208 27 88 chr9 16803830 16804124 -101058503 + Charlie4 DNA MER1_type 1 276 -1685 1009 248 92 75 chr9 16804327 16804967 -101057660 + Charlie4 DNA MER1_type 1293 1943 -18 21 36 0 0 chr9 16805467 16805495 -101057132 + AT_rich Low_complexity Low_complexity 1 28 0 238 295 18 27 chr9 16805515 16805627 -101057000 - L1MC/D LINE L1 -1999 5809 5699 192 167 48 0 chr9 16805663 16805705 -101056922 - L3 LINE CR1 -708 869 826 378 286 156 59 chr9 16805757 16806317 -101056310 - L1MC/D LINE L1 -747 5399 4889 1765 156 3 3 chr9 16806317 16806599 -101056028 - AluSx SINE Alu -30 282 1 378 286 156 59 chr9 16806599 16806868 -101055759 - L1MC/D LINE L1 -1257 4889 4648 354 322 33 22 chr9 16807082 16807265 -101055362 - L2 LINE L2 -484 2830 2646 328 233 9 26 chr9 16807432 16807548 -101055079 + (TTA)n Simple_repeat Simple_repeat 1 114 0 22 0 0 0 chr9 16808128 16808150 -101054477 + AT_rich Low_complexity Low_complexity 1 22 0 1999 147 24 72 chr9 16808432 16808848 -101053779 - MSTD LTR MaLR 0 396 1 265 281 176 41 chr9 16809064 16809359 -101053268 + L1MEd LINE L1 282 616 -5503 353 280 119 18 chr9 16809602 16809770 -101052857 + L1MEd LINE L1 918 1102 -5017 321 234 32 0 chr9 16809943 16810037 -101052590 - L1ME1 LINE L1 -8 6394 6298 * 323 167 0 135 chr9 16810034 16810130 -101052497 - L1PA15-16 LINE L1 -5466 1383 1301 * 884 145 0 150 chr9 16810123 16810350 -101052277 - L1PA15-16 LINE L1 -5436 1413 1221 * 1462 223 84 71 chr9 16810325 16810648 -101051979 - L1ME1 LINE L1 -520 6349 6032 1960 146 3 0 chr9 16810648 16810936 -101051691 - AluJb SINE Alu -23 289 1 1462 223 84 71 chr9 16810936 16811601 -101051026 - L1ME1 LINE L1 -837 6032 5326 422 234 124 9 chr9 16811634 16811844 -101050783 - L1ME1 LINE L1 -2789 3593 3356 769 73 0 73 chr9 16811844 16811981 -101050646 - L1PA8 LINE L1 0 6172 6046 793 294 35 0 chr9 16812018 16812215 -101050412 + MER58A DNA MER1_type 1 204 -20 1346 250 44 12 chr9 16812217 16812556 -101050071 - L1ME1 LINE L1 -4250 2313 1956 279 0 0 0 chr9 16812556 16812587 -101050040 + (TA)n Simple_repeat Simple_repeat 2 32 0 1346 250 44 12 chr9 16812587 16812679 -101049948 - L1ME1 LINE L1 -4607 1956 1868 347 300 58 16 chr9 16812684 16812874 -101049753 - L1ME1 LINE L1 -4756 1807 1610 9239 137 12 8 chr9 16812893 16815532 -101047095 - L1MA2 LINE L1 0 6304 3659 297 287 11 0 chr9 16815531 16815625 -101047002 - L1ME1 LINE L1 -4914 1470 1376 * 180 97 0 0 chr9 16815625 16815656 -101046971 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 20105 180 29 20 chr9 16815674 16821497 -101041130 - L1PA11 LINE L1 -8 6235 37 532 311 133 41 chr9 16821522 16822214 -101040413 - L2 LINE L2 -1884 1430 666 1788 177 19 40 chr9 16822214 16822587 -101040040 - MLT1A1 LTR MaLR 0 365 1 532 311 133 41 chr9 16822587 16822624 -101040003 - L2 LINE L2 -2648 666 634 551 140 43 0 chr9 16822707 16822800 -101039827 - MER3 DNA MER1_type -2 207 111 4697 94 12 154 chr9 16822800 16823758 -101038869 - LTR12 LTR ERV1 0 826 5 2291 197 26 30 chr9 16823774 16824379 -101038248 - pTR5 LTR ERV1 -1094 1344 742 572 232 9 0 chr9 16824379 16824491 -101038136 - MER3 DNA MER1_type -96 113 1 183 80 0 0 chr9 16826588 16826613 -101036014 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1639 99 0 0 chr9 16826644 16826856 -101035771 - AluY SINE Alu -99 212 1 23 33 0 0 chr9 16826856 16826886 -101035741 + AT_rich Low_complexity Low_complexity 1 30 0 28 29 0 0 chr9 16827384 16827419 -101035208 + AT_rich Low_complexity Low_complexity 1 35 0 897 28 9 0 chr9 16827419 16827525 -101035102 - U6 snRNA snRNA 0 107 1 24 0 0 0 chr9 16828736 16828760 -101033867 + AT_rich Low_complexity Low_complexity 1 24 0 2835 9 0 30 chr9 16829254 16829582 -101033045 + AluYb8 SINE Alu 1 318 0 2185 100 7 23 chr9 16829595 16829904 -101032723 + AluSx SINE Alu 1 304 -8 2196 112 0 0 chr9 16830604 16830898 -101031729 - AluSx SINE Alu -18 294 1 272 262 52 123 chr9 16831564 16831639 -101030988 - L1ME4a LINE L1 0 6121 6042 793 189 0 0 chr9 16831639 16831766 -101030861 + FLAM_C SINE Alu 1 127 -6 272 262 52 123 chr9 16831766 16832136 -101030491 - L1ME4a LINE L1 -79 6042 5708 2044 117 21 3 chr9 16832668 16832951 -101029676 - AluSx SINE Alu -24 288 1 733 333 34 13 chr9 16833009 16833246 -101029381 - MIR SINE MIR -8 254 13 439 263 132 50 chr9 16835081 16835362 -101027265 - L2 LINE L2 -5 3308 3005 25 65 0 0 chr9 16836167 16836213 -101026414 + AT_rich Low_complexity Low_complexity 1 46 0 287 277 53 0 chr9 16836721 16836815 -101025812 - MIR SINE MIR -3 259 161 348 299 227 0 chr9 16836864 16837018 -101025609 - MIR SINE MIR -69 193 5 308 274 112 28 chr9 16837023 16837202 -101025425 - MIR SINE MIR -12 250 57 362 225 0 0 chr9 16837351 16837431 -101025196 - MER116 DNA Mariner 0 80 1 281 276 93 26 chr9 16837548 16837816 -101024811 - L1ME4a LINE L1 -1 6120 5835 1314 182 56 94 chr9 16837825 16838293 -101024334 + LTR7 LTR ERV1 1 450 0 1417 153 95 7 chr9 16838343 16838637 -101023990 - L1MA7 LINE L1 0 6291 5972 267 203 0 0 chr9 16838701 16838765 -101023862 + CT-rich Low_complexity Low_complexity 3 66 0 702 281 101 16 chr9 16838792 16839109 -101023518 - L1ME4a LINE L1 -394 5727 5384 592 263 118 5 chr9 16839394 16839580 -101023047 + MIR SINE MIR 2 208 -54 275 133 0 0 chr9 16839823 16839868 -101022759 - FLAM_A SINE Alu 0 133 89 1167 175 22 36 chr9 16839868 16840091 -101022536 - AluJo SINE Alu -92 220 1 1487 130 8 25 chr9 16840349 16840588 -101022039 + MER46A DNA MER2_type 1 235 -1 10775 41 2 0 chr9 16840844 16842926 -101019701 - L1PA5 LINE L1 -6 6148 4060 14587 55 3 0 chr9 16842928 16844788 -101017839 + L1P LINE L1 852 2717 -3429 1634 161 47 0 chr9 16844790 16845069 -101017558 - AluSc SINE Alu -1 308 17 293 294 93 23 chr9 16845073 16845287 -101017340 - L1ME4a LINE L1 -1832 4314 4086 20270 61 1 0 chr9 16845396 16847998 -101014629 - L1P LINE L1 -3038 3108 504 687 12 0 0 chr9 16848100 16848180 -101014447 + L1P LINE L1 4674 4753 -1393 2499 150 9 21 chr9 16848726 16849159 -101013468 - L1MB2 LINE L1 -143 6264 5837 22 0 0 0 chr9 16849199 16849221 -101013406 + AT_rich Low_complexity Low_complexity 1 22 0 11703 31 15 0 chr9 16849221 16851413 -101011214 - L1PA3 LINE L1 0 6155 3942 10891 44 1 0 chr9 16851413 16852768 -101009859 + L1P LINE L1 1379 2735 -3411 9644 210 21 32 chr9 16852765 16853794 -101008833 - L1MB2 LINE L1 -567 5852 4813 * 2174 107 7 0 chr9 16853794 16854093 -101008534 - AluSp SINE Alu -12 301 1 9644 210 21 32 chr9 16854093 16855904 -101006723 - L1MB2 LINE L1 -1606 4813 3054 7468 126 42 16 chr9 16855916 16857151 -101005476 - L1MB2 LINE L1 -5100 1284 18 180 406 23 8 chr9 16857294 16857427 -101005200 - L2 LINE L2 -693 2621 2487 381 75 0 0 chr9 16859496 16859549 -101003078 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 285 330 18 18 chr9 16859550 16859662 -101002965 - L2 LINE L2 -10 3262 3151 572 137 46 77 chr9 16859665 16859836 -101002791 + MER3 DNA MER1_type 1 209 0 423 0 0 0 chr9 16859914 16859961 -101002666 + (TTATA)n Simple_repeat Simple_repeat 1 47 0 332 299 89 32 chr9 16859971 16860128 -101002499 - L2 LINE L2 -215 3057 2892 449 276 9 19 chr9 16861678 16861783 -101000844 + L2 LINE L2 3210 3313 0 325 285 15 51 chr9 16863165 16863302 -100999325 - L1ME4a LINE L1 -5 6116 5985 1379 213 38 13 chr9 16863325 16863639 -100998988 + MER58B DNA MER1_type 20 341 0 303 298 85 28 chr9 16863649 16863790 -100998837 - L1ME4a LINE L1 -262 5859 5711 302 279 116 8 chr9 16863802 16863931 -100998696 - L1ME4a LINE L1 -484 5637 5495 210 191 0 0 chr9 16864289 16864336 -100998291 + (TA)n Simple_repeat Simple_repeat 2 48 0 1938 53 16 0 chr9 16864491 16864737 -100997890 + L1PA4 LINE L1 5905 6154 -1 641 312 85 16 chr9 16864779 16865096 -100997531 - L1MC/D LINE L1 -2096 5712 5374 1431 249 57 23 chr9 16865145 16865598 -100997029 + MLT1J LTR MaLR 1 503 -8 2122 107 0 7 chr9 16866170 16866461 -100996166 - AluSq SINE Alu -24 289 1 666 298 54 16 chr9 16866803 16867045 -100995582 + MIR SINE MIR 12 262 0 629 294 46 16 chr9 16867108 16867302 -100995325 - MIR SINE MIR -43 219 20 233 319 163 31 chr9 16867411 16867699 -100994928 - L2 LINE L2 0 3313 2988 239 279 0 0 chr9 16867839 16867900 -100994727 - MLT1H LTR MaLR -488 61 1 209 205 0 60 chr9 16868294 16868411 -100994216 + (TATATG)n Simple_repeat Simple_repeat 2 111 0 234 276 270 33 chr9 16868995 16869147 -100993480 - MIR3 SINE MIR 0 208 21 2093 100 30 23 chr9 16869947 16870246 -100992381 - AluSx SINE Alu -11 301 1 954 124 78 60 chr9 16872216 16872433 -100990194 + L1PA16 LINE L1 5944 6164 -2 779 161 0 0 chr9 16876349 16876473 -100986154 - FLAM_A SINE Alu -6 127 4 271 271 115 60 chr9 16876525 16876743 -100985884 - MIR SINE MIR -26 236 7 21 0 0 0 chr9 16876781 16876802 -100985825 + AT_rich Low_complexity Low_complexity 1 21 0 1326 176 33 61 chr9 16877177 16877625 -100985002 + MLT1D LTR MaLR 1 505 0 39 38 0 0 chr9 16878053 16878106 -100984521 + AT_rich Low_complexity Low_complexity 1 53 0 181 250 0 42 chr9 16879150 16879198 -100983429 + L3b LINE CR1 1362 1407 -176 1824 199 31 16 chr9 16880124 16880577 -100982050 - L1MB7 LINE L1 0 6184 5725 2876 221 31 17 chr9 16880577 16881347 -100981280 - L1M4 LINE L1 -1872 4274 3491 364 55 0 0 chr9 16881358 16881413 -100981214 - L1MB3 LINE L1 -2 6181 6127 1283 219 55 77 chr9 16882183 16882246 -100980381 + MLT1A2 LTR MaLR 1 64 -310 1803 116 116 33 chr9 16882246 16882582 -100980045 - THE1B LTR MaLR 0 364 1 1283 219 55 77 chr9 16882582 16882897 -100979730 + MLT1A2 LTR MaLR 64 371 -3 450 261 98 20 chr9 16883712 16883865 -100978762 + MIR SINE MIR 71 235 -27 270 0 0 0 chr9 16884888 16884918 -100977709 + (TG)n Simple_repeat Simple_repeat 1 30 0 450 0 0 0 chr9 16885221 16885271 -100977356 + (TG)n Simple_repeat Simple_repeat 2 51 0 228 244 0 0 chr9 16885898 16885943 -100976684 + (TATG)n Simple_repeat Simple_repeat 3 47 0 346 303 161 11 chr9 16885946 16886220 -100976407 + L1ME4a LINE L1 5583 5897 -224 337 214 182 13 chr9 16886436 16886595 -100976032 + L1ME4a LINE L1 5935 6120 -1 386 292 125 0 chr9 16886940 16887084 -100975543 - MIR SINE MIR -35 227 66 525 298 73 49 chr9 16888355 16888755 -100973872 + L1MC/D LINE L1 4877 5289 -857 1037 115 13 6 chr9 16888755 16888912 -100973715 + L1PA15 LINE L1 6006 6163 -2 297 282 73 8 chr9 16888980 16889104 -100973523 + L1MC/D LINE L1 5652 5783 -459 4793 107 7 16 chr9 16889172 16889908 -100972719 - Tigger4(Zombi) DNA MER2_type 0 2731 2003 41498 63 4 4 chr9 16889921 16896062 -100966565 + L1PA5 LINE L1 11 6145 -9 13033 121 18 20 chr9 16896062 16898084 -100964543 - Tigger4(Zombi) DNA MER2_type -710 2021 4 29 0 0 0 chr9 16898265 16898294 -100964333 + AT_rich Low_complexity Low_complexity 1 29 0 827 316 37 39 chr9 16898469 16898960 -100963667 - LTR16B LTR ERVL 0 464 3 990 307 69 41 chr9 16898965 16900073 -100962554 - ERVL LTR ERVL -18 5325 4001 340 322 0 0 chr9 16900075 16900162 -100962465 - ERVL LTR ERVL -1477 4287 4201 941 198 6 0 chr9 16900539 16900706 -100961921 + FRAM SINE Alu 4 171 -5 627 209 12 6 chr9 16900709 16900881 -100961746 + GA-rich Low_complexity Low_complexity 4 176 0 186 43 0 0 chr9 16900888 16900911 -100961716 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 302 205 90 41 chr9 16901955 16902077 -100960550 - L2 LINE L2 -1899 1415 1288 204 40 0 0 chr9 16902866 16902891 -100959736 + (TG)n Simple_repeat Simple_repeat 2 26 0 6969 130 54 31 chr9 16903026 16903302 -100959325 + Tigger3b DNA MER2_type 1 269 -2759 1819 154 37 3 chr9 16903302 16903601 -100959026 - AluJo SINE Alu -3 309 1 6969 130 54 31 chr9 16903601 16904526 -100958101 + Tigger3b DNA MER2_type 269 1230 -1 586 206 56 56 chr9 16904642 16904802 -100957825 + MIR3 SINE MIR 48 207 -1 4352 154 44 72 chr9 16906481 16906977 -100955650 - L1MB8 LINE L1 -9 6169 5661 1399 165 91 77 chr9 16906977 16907316 -100955311 - MER2 DNA MER2_type 0 344 1 4352 154 44 72 chr9 16907316 16907419 -100955208 - L1MB8 LINE L1 -517 5661 5557 1511 134 0 9 chr9 16907419 16907636 -100954991 - AluSx SINE Alu -97 215 1 4352 154 44 72 chr9 16907636 16907905 -100954722 - L1MB8 LINE L1 -621 5557 5282 7923 39 1 0 chr9 16907905 16909379 -100953248 - L1PA4 LINE L1 0 6155 4681 4352 154 44 72 chr9 16909379 16909838 -100952789 - L1MB8 LINE L1 -896 5282 4867 42 20 0 0 chr9 16910500 16910549 -100952078 + AT_rich Low_complexity Low_complexity 1 49 0 243 261 43 0 chr9 16912399 16912468 -100950159 + MLT1J LTR MaLR 1 72 -439 262 318 133 7 chr9 16913137 16913288 -100949339 - L2 LINE L2 0 3272 3103 463 307 159 45 chr9 16913707 16914287 -100948340 - HAL1 LINE L1 -1032 1475 830 8795 120 23 15 chr9 16915116 16916503 -100946124 - Tigger1 DNA MER2_type 0 2418 963 743 62 0 10 chr9 16916503 16916600 -100946027 + L1PA4 LINE L1 6056 6151 -4 8795 120 23 15 chr9 16916600 16916891 -100945736 - Tigger1 DNA MER2_type -1455 963 676 3679 145 42 0 chr9 16917089 16917683 -100944944 - L1MB3 LINE L1 -7 6176 5558 212 241 0 19 chr9 16917850 16917904 -100944723 + L2 LINE L2 3219 3271 -1 27 62 0 0 chr9 16918588 16918636 -100943991 + AT_rich Low_complexity Low_complexity 1 48 0 497 315 60 13 chr9 16918862 16919176 -100943451 - L1ME LINE L1 -341 5780 5452 202 200 0 0 chr9 16921036 16921076 -100941551 + GA-rich Low_complexity Low_complexity 1 40 0 457 200 0 90 chr9 16921454 16921538 -100941089 - Tigger7 DNA MER2_type -1 2486 2411 1934 146 79 3 chr9 16921538 16921868 -100940759 + MER46B DNA MER2_type 3 232 -4 457 200 0 90 chr9 16921868 16921883 -100940744 - Tigger7 DNA MER2_type -76 2411 2396 * 2797 193 31 14 chr9 16921882 16922394 -100940233 - Tigger7 DNA MER2_type -212 521 1 2184 105 0 7 chr9 16922566 16922860 -100939767 - AluSc SINE Alu -17 292 1 496 300 122 22 chr9 16922969 16923199 -100939428 + MIR SINE MIR 9 261 -1 734 300 32 8 chr9 16923225 16923472 -100939155 + MLT1I LTR MaLR 157 409 0 501 163 35 0 chr9 16924572 16924658 -100937969 - AluSg/x SINE Alu -16 294 206 2327 168 98 13 chr9 16925323 16925770 -100936857 + MLT1D LTR MaLR 21 505 0 277 224 35 0 chr9 16926364 16926422 -100936205 + MER81 DNA DNA 3 62 -52 250 233 22 78 chr9 16926435 16926465 -100936162 - MER81 DNA DNA -29 85 55 3448 183 17 19 chr9 16926465 16926634 -100935993 + L1MB5 LINE L1 5525 5693 -481 1921 123 0 57 chr9 16926634 16926959 -100935668 + AluSx SINE Alu 1 308 0 3448 183 17 19 chr9 16926959 16927432 -100935195 + L1MB5 LINE L1 5693 6167 -7 250 233 22 78 chr9 16927432 16927491 -100935136 - MER81 DNA DNA -59 55 1 21 0 0 0 chr9 16928935 16928956 -100933671 + AT_rich Low_complexity Low_complexity 1 21 0 220 309 191 0 chr9 16929485 16929579 -100933048 - L2 LINE L2 -229 3043 2932 356 204 75 0 chr9 16929968 16930061 -100932566 - MER53 DNA DNA -89 100 1 1223 239 145 12 chr9 16930121 16930527 -100932100 + LTR16B LTR ERVL 1 460 -4 553 237 75 16 chr9 16930859 16931045 -100931582 + MER117 DNA MER1_type 1 197 0 1770 174 37 29 chr9 16931345 16931696 -100930931 - MLT1A1 LTR MaLR -11 354 1 977 181 0 0 chr9 16934099 16934259 -100928368 - FRAM SINE Alu -19 157 1 3728 102 13 17 chr9 16934706 16935236 -100927391 + MER1A DNA MER1_type 2 529 0 180 260 20 0 chr9 16935273 16935323 -100927304 - MIR SINE MIR -132 130 80 228 246 35 0 chr9 16937245 16937302 -100925325 - L2 LINE L2 -9 3304 3246 1370 274 59 71 chr9 16937803 16937837 -100924790 + L1MEd LINE L1 804 837 -5693 2411 81 0 0 chr9 16937837 16938145 -100924482 + AluY SINE Alu 1 308 -3 1370 274 59 71 chr9 16938145 16938303 -100924324 + L1MEd LINE L1 837 995 -5535 2980 106 84 4 chr9 16938303 16938767 -100923860 + L1MA5 LINE L1 5799 6299 -1 1370 274 59 71 chr9 16938767 16939448 -100923179 + L1MEd LINE L1 995 1668 -4862 267 286 30 38 chr9 16939540 16939673 -100922954 + HAL1 LINE L1 1483 1614 -893 254 270 125 13 chr9 16940100 16940252 -100922375 + L1MEd LINE L1 2436 2604 -3936 250 250 0 0 chr9 16940291 16940359 -100922268 + A-rich Low_complexity Low_complexity 1 68 0 311 287 18 61 chr9 16941155 16941319 -100921308 - MLT1J LTR MaLR -280 231 75 182 228 281 0 chr9 16941486 16941543 -100921084 + MIR SINE MIR 106 178 -84 230 282 58 42 chr9 16943469 16943606 -100919021 - MIR SINE MIR -65 143 58 354 278 42 35 chr9 16943944 16944088 -100918539 + MIR SINE MIR 87 231 -31 199 288 17 0 chr9 16944060 16944119 -100918508 + L2 LINE L2 3251 3310 -3 * 23 0 0 0 chr9 16944733 16944756 -100917871 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 16945997 16946022 -100916605 + AT_rich Low_complexity Low_complexity 1 25 0 792 208 17 0 chr9 16946628 16946806 -100915821 - LTR16C LTR ERVL -2 489 309 1041 195 13 66 chr9 16946818 16947044 -100915583 - MER20 DNA MER1_type -3 216 3 314 250 244 0 chr9 16947419 16947587 -100915040 - MIR SINE MIR -6 256 48 765 314 117 47 chr9 16947897 16947997 -100914630 + L2 LINE L2 1870 1962 -1352 2511 94 39 36 chr9 16947997 16948360 -100914267 + THE1B LTR MaLR 1 364 0 765 314 117 47 chr9 16948360 16949000 -100913627 + L2 LINE L2 1962 2662 -652 354 257 208 24 chr9 16949145 16949328 -100913299 + MIR SINE MIR 34 262 0 344 291 0 64 chr9 16950018 16950128 -100912499 + MIR SINE MIR 12 114 -148 575 163 116 47 chr9 16950191 16950320 -100912307 + MIR SINE MIR 104 241 -21 10252 138 27 25 chr9 16950393 16951362 -100911265 + Ricksha_c DNA DNA 1 967 -2287 2185 124 7 0 chr9 16951362 16951661 -100910966 - AluSx SINE Alu -11 301 1 10252 138 27 25 chr9 16951661 16952699 -100909928 + Ricksha_c DNA DNA 967 2008 -38 404 280 80 11 chr9 16952951 16953126 -100909501 + LTR33 LTR ERVL 305 491 -30 194 245 113 0 chr9 16953135 16953188 -100909439 - MIR SINE MIR -201 61 3 2629 93 28 0 chr9 16953254 16953608 -100909019 - THE1B LTR MaLR 0 364 1 330 314 65 6 chr9 16954605 16954774 -100907853 - MIR3 SINE MIR -6 202 24 251 261 34 12 chr9 16954847 16954974 -100907653 + MIR SINE MIR 2 130 -78 497 209 219 71 chr9 16956439 16956860 -100905767 - L2 LINE L2 -655 2659 2177 361 279 117 41 chr9 16957437 16957727 -100904900 + L1ME4a LINE L1 5793 6104 -17 1048 201 5 29 chr9 16957731 16957940 -100904687 + MER3 DNA MER1_type 1 204 -5 2076 129 0 10 chr9 16957945 16958262 -100904365 - AluSx SINE Alu 0 312 1 200 263 62 38 chr9 16958659 16958739 -100903888 - MIR SINE MIR -96 166 85 233 70 70 18 chr9 16958908 16958965 -100903662 + T-rich Low_complexity Low_complexity 2 61 0 180 0 0 0 chr9 16959527 16959547 -100903080 + (TAA)n Simple_repeat Simple_repeat 2 21 0 189 204 61 20 chr9 16960751 16960800 -100901827 - MIR SINE MIR -100 108 58 2950 16 0 0 chr9 16960970 16961288 -100901339 - AluYb8 SINE Alu 0 318 1 314 320 49 0 chr9 16962549 16962671 -100899956 + MIR SINE MIR 16 143 -65 331 210 62 0 chr9 16962753 16962834 -100899793 + MIR3 SINE MIR 118 203 -5 21 36 0 0 chr9 16962957 16962985 -100899642 + AT_rich Low_complexity Low_complexity 1 28 0 642 244 23 6 chr9 16963116 16963288 -100899339 - MIR SINE MIR 0 262 88 441 200 0 0 chr9 16963367 16963442 -100899185 + MER63 DNA MER1_type 677 751 -311 197 32 0 32 chr9 16963648 16963679 -100898948 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2093 142 3 3 chr9 16963718 16964048 -100898579 + L1PA15 LINE L1 5836 6165 0 252 100 0 0 chr9 16964070 16964110 -100898517 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 205 308 131 0 chr9 16964463 16964570 -100898057 + L2 LINE L2 3193 3313 0 313 294 0 11 chr9 16965264 16965356 -100897271 - MIR SINE MIR -61 147 57 261 241 314 15 chr9 16967185 16967274 -100895353 + MIR SINE MIR 47 108 -154 323 44 22 0 chr9 16967274 16967319 -100895308 + (TG)n Simple_repeat Simple_repeat 1 46 0 261 241 314 15 chr9 16967319 16967366 -100895261 + MIR SINE MIR 108 224 -38 8044 14 0 0 chr9 16967935 16969425 -100893202 - L1PA2 LINE L1 0 6155 4666 4242 23 0 0 chr9 16969427 16969912 -100892715 + L1P LINE L1 4136 4620 -1526 511 280 156 19 chr9 16969967 16970178 -100892449 + MIR SINE MIR 2 241 -21 213 231 0 0 chr9 16970879 16970918 -100891709 + (TG)n Simple_repeat Simple_repeat 1 39 0 201 74 0 0 chr9 16971467 16971494 -100891133 + (TCTG)n Simple_repeat Simple_repeat 1 27 0 1046 254 68 34 chr9 16972407 16972761 -100889866 + MLT1K LTR MaLR 190 555 -33 202 157 0 78 chr9 16974457 16974508 -100888119 + MIR SINE MIR 74 121 -87 943 259 136 93 chr9 16974833 16975874 -100886753 - HAL1 LINE L1 -1420 1087 2 394 368 108 19 chr9 16975948 16976425 -100886202 - L2 LINE L2 -49 3223 2702 505 240 226 19 chr9 16977235 16977318 -100885309 - MER112 DNA MER1_type -1 259 194 447 68 0 0 chr9 16977318 16977377 -100885250 + (CATAG)n Simple_repeat Simple_repeat 2 60 0 505 240 226 19 chr9 16977377 16977501 -100885126 - MER112 DNA MER1_type -66 194 9 324 264 18 80 chr9 16978816 16978979 -100883648 + MLT1H LTR MaLR 23 175 -374 1314 152 134 11 chr9 16979381 16979530 -100883097 + L1MA9 LINE L1 6003 6132 -180 408 20 0 0 chr9 16979530 16979579 -100883048 + (CA)n Simple_repeat Simple_repeat 2 50 0 1314 152 134 11 chr9 16979579 16979705 -100882922 + L1MA9 LINE L1 6132 6312 0 1879 166 44 121 chr9 16980723 16981228 -100881399 + MLT1C LTR MaLR 1 466 -1 657 264 34 6 chr9 16981287 16981465 -100881162 - MIR SINE MIR -21 241 59 317 318 8 24 chr9 16981597 16981723 -100880904 - L3 LINE CR1 -400 1177 1054 247 280 13 13 chr9 16982644 16982719 -100879908 + MLT1L LTR MaLR 8 82 -533 242 303 44 61 chr9 16984674 16984874 -100877753 - MIR SINE MIR -46 216 17 301 345 0 0 chr9 16986194 16986281 -100876346 - MIR3 SINE MIR -3 205 119 328 289 89 37 chr9 16986310 16986445 -100876182 + MIR3 SINE MIR 3 144 -64 245 248 64 40 chr9 16986699 16986824 -100875803 - MLT2E LTR ERVL 0 628 501 324 217 48 24 chr9 16987034 16987117 -100875510 - MLT2E LTR ERVL -509 119 35 11563 94 42 25 chr9 16987373 16987786 -100874841 - L1P LINE L1 -2427 3719 3314 1941 118 0 0 chr9 16987786 16988040 -100874587 - AluSg SINE Alu -16 294 41 11563 94 42 25 chr9 16988040 16989435 -100873192 - L1P LINE L1 -2832 3314 1881 9993 82 10 0 chr9 16989433 16990778 -100871849 + L1PA7 LINE L1 3726 5084 -1062 * 2759 72 0 0 chr9 16990774 16991136 -100871491 - L1PA7 LINE L1 -915 5231 4870 * 6768 60 23 0 chr9 16991136 16992048 -100870579 + L1PA7 LINE L1 5219 6150 -4 200 244 77 64 chr9 16993751 16993829 -100868798 - MER5A DNA MER1_type -3 186 108 181 288 17 0 chr9 16995960 16996019 -100866608 - L2 LINE L2 -795 2519 2460 242 97 0 0 chr9 16996289 16996320 -100866307 - MSTA LTR MaLR -393 35 5 * 1849 126 160 9 chr9 16996309 16996659 -100865968 + MSTA LTR MaLR 26 428 0 298 194 10 10 chr9 16996928 16997031 -100865596 + CT-rich Low_complexity Low_complexity 1 103 0 321 300 18 9 chr9 16997147 16997257 -100865370 + MIR SINE MIR 21 131 -131 239 221 58 0 chr9 16997311 16997397 -100865230 - L1MC4 LINE L1 -1336 6706 6616 288 305 19 19 chr9 16998024 16998129 -100864498 + LTR33 LTR ERVL 107 211 -310 632 258 43 48 chr9 16998186 16998395 -100864232 + LTR33 LTR ERVL 314 521 0 304 286 43 43 chr9 16998906 16999046 -100863581 - MIR SINE MIR -74 188 49 332 282 38 23 chr9 16999600 16999731 -100862896 + MIR SINE MIR 51 183 -79 210 191 0 0 chr9 16999807 16999849 -100862778 + (CAT)n Simple_repeat Simple_repeat 3 44 0 201 222 67 56 chr9 16999951 17000041 -100862586 + MIR SINE MIR 61 151 -111 751 142 86 25 chr9 17002697 17002859 -100859768 - MER53 DNA DNA 0 189 18 2339 204 56 68 chr9 17002866 17003523 -100859104 + MLT1E1 LTR MaLR 6 654 0 183 162 0 0 chr9 17003963 17004000 -100858627 + G-rich Low_complexity Low_complexity 4 40 0 280 312 24 24 chr9 17004763 17004930 -100857697 + MIR SINE MIR 13 139 -69 399 130 22 22 chr9 17006088 17006180 -100856447 + (TCCA)n Simple_repeat Simple_repeat 1 92 0 505 298 33 13 chr9 17006214 17006365 -100856262 - L2 LINE L2 -1 3271 3118 431 147 0 0 chr9 17008482 17008550 -100854077 - L1MC4 LINE L1 0 8042 7975 351 139 42 14 chr9 17008550 17008622 -100854005 - MER106B DNA MER1_type 0 1059 986 1010 148 13 0 chr9 17008631 17008786 -100853841 - FRAM SINE Alu -20 156 1 522 243 54 7 chr9 17008791 17008939 -100853688 - MER106A DNA MER1_type -80 156 2 316 212 0 0 chr9 17008943 17009009 -100853618 - L1MC4 LINE L1 -63 7979 7914 180 273 0 0 chr9 17009028 17009094 -100853533 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 445 198 9 36 chr9 17009102 17009213 -100853414 - L1MC4 LINE L1 -128 7914 7807 186 389 37 9 chr9 17009234 17009342 -100853285 + L2 LINE L2 3176 3286 -27 293 276 40 0 chr9 17010162 17010238 -100852389 - MER2 DNA MER2_type 0 345 267 768 145 26 0 chr9 17010259 17010376 -100852251 + MSTB LTR MaLR 254 373 -53 1006 124 62 46 chr9 17010415 17010609 -100852018 - MER2 DNA MER2_type -134 211 15 1916 126 4 0 chr9 17010932 17011210 -100851417 + AluSx SINE Alu 5 283 -29 307 267 22 22 chr9 17011221 17011311 -100851316 - L1MC4 LINE L1 -1339 6703 6614 203 125 25 0 chr9 17011311 17011351 -100851276 + (CA)n Simple_repeat Simple_repeat 2 42 0 365 341 54 18 chr9 17011532 17011699 -100850928 - MIR3 SINE MIR -7 201 29 303 357 83 0 chr9 17012746 17012914 -100849713 - HERVL LTR ERVL -758 4896 4715 970 141 0 0 chr9 17013028 17013177 -100849450 + FRAM SINE Alu 1 40 0 608 308 104 39 chr9 17013179 17013536 -100849091 - HERVL LTR ERVL -885 4600 4221 1014 314 84 35 chr9 17013556 17014246 -100848381 - HERVL LTR ERVL -1710 4054 3331 1788 297 73 43 chr9 17014350 17015806 -100846821 + L1ME2 LINE L1 111 1611 -4785 2451 225 126 22 chr9 17015850 17017069 -100845558 + L1ME2 LINE L1 4876 6224 -9 390 361 79 1 chr9 17017089 17017302 -100845325 - HERVL LTR ERVL -2386 3268 3068 2331 141 20 0 chr9 17017304 17017652 -100844975 - THE1B LTR MaLR -2 362 8 1898 147 0 10 chr9 17017759 17018065 -100844562 + AluSx SINE Alu 1 303 -9 1404 197 17 27 chr9 17018084 17018384 -100844243 + AluJo SINE Alu 1 297 -15 1598 347 77 18 chr9 17018386 17019459 -100843168 - HERVL LTR ERVL -2738 3026 1890 965 212 5 5 chr9 17019463 17019647 -100842980 + MER5A DNA MER1_type 6 189 0 286 237 26 0 chr9 17019698 17019772 -100842855 - HERVL LTR ERVL -3666 1819 1743 298 278 67 22 chr9 17020256 17020346 -100842281 + MER101B LTR ERV1 1 94 -476 2168 122 68 6 chr9 17020363 17020716 -100841911 + THE1C LTR MaLR 1 375 0 1600 230 15 4 chr9 17020883 17021260 -100841367 + LTR51 LTR ERV1 228 838 -85 249 198 12 139 chr9 17024012 17024098 -100838529 - L2 LINE L2 0 3272 3198 183 300 0 0 chr9 17024313 17024363 -100838264 + L2 LINE L2 3137 3186 -86 271 176 39 0 chr9 17024433 17024484 -100838143 + MLT1L LTR MaLR 216 268 -347 292 336 26 0 chr9 17024522 17024638 -100837989 + MLT1L LTR MaLR 337 455 -160 232 231 0 22 chr9 17024722 17024813 -100837814 + CT-rich Low_complexity Low_complexity 5 93 0 33 43 0 0 chr9 17026544 17026591 -100836036 + AT_rich Low_complexity Low_complexity 1 47 0 335 204 119 68 chr9 17026778 17026954 -100835673 - L1MC4a LINE L1 -1963 5845 5661 417 269 151 8 chr9 17027989 17028108 -100834519 + MIR3 SINE MIR 20 155 -53 225 291 58 0 chr9 17028198 17028284 -100834343 - MIR SINE MIR -67 141 51 203 360 45 9 chr9 17028275 17028386 -100834241 + L2 LINE L2 2958 3072 -200 * 317 324 28 64 chr9 17028603 17028853 -100833774 + L2 LINE L2 2835 3075 -197 453 229 168 29 chr9 17028971 17029153 -100833474 - MLT1J LTR MaLR -40 575 289 245 250 94 0 chr9 17029398 17029462 -100833165 + MER5C DNA MER1_type 55 124 -200 973 214 107 85 chr9 17030120 17030522 -100832105 - MLT1C LTR MaLR -5 462 52 460 213 74 0 chr9 17030591 17030713 -100831914 - LTR16A LTR ERVL -9 441 311 266 270 0 27 chr9 17032041 17032115 -100830512 + CT-rich Low_complexity Low_complexity 5 76 0 187 370 83 22 chr9 17032847 17033028 -100829599 - MIR SINE MIR -70 192 1 633 296 40 26 chr9 17034084 17034316 -100828311 + MIR SINE MIR 23 261 -1 472 271 164 7 chr9 17034328 17034468 -100828159 - L2 LINE L2 -1 3271 3110 590 286 7 0 chr9 17034576 17034716 -100827911 + L2 LINE L2 3169 3309 -4 348 244 120 49 chr9 17035094 17035346 -100827281 - MLT1J1 LTR MaLR -191 259 1 462 272 104 63 chr9 17035705 17036040 -100826587 + MLT1J1 LTR MaLR 72 420 -26 2454 218 59 26 chr9 17036164 17036737 -100825890 + L1ME2 LINE L1 5526 6122 -42 2291 78 3 0 chr9 17036737 17037030 -100825597 + AluSp SINE Alu 1 294 -19 2454 218 59 26 chr9 17037030 17037066 -100825561 + L1ME2 LINE L1 6122 6155 -9 449 265 70 11 chr9 17038882 17039027 -100823600 + MIR SINE MIR 16 164 -58 559 216 0 0 chr9 17039296 17039398 -100823229 - LTR40a LTR ERVL -415 104 3 711 161 51 0 chr9 17039401 17039519 -100823108 - MER63 DNA MER1_type -86 750 1 270 153 0 0 chr9 17041389 17041448 -100821179 + CT-rich Low_complexity Low_complexity 1 59 0 553 219 182 21 chr9 17042052 17042239 -100820388 - MIR SINE MIR -26 236 20 414 0 0 0 chr9 17042923 17042969 -100819658 + (TG)n Simple_repeat Simple_repeat 2 47 0 246 389 8 8 chr9 17043337 17043463 -100819164 + MIR SINE MIR 22 147 -61 4735 141 31 7 chr9 17043467 17044282 -100818345 + L1MA8 LINE L1 5455 6288 -3 1977 155 63 39 chr9 17045350 17045765 -100816862 - MLT2D LTR ERVL -13 507 6 604 290 13 0 chr9 17045769 17045924 -100816703 - MIR SINE MIR -59 203 47 184 274 16 32 chr9 17048123 17048185 -100814442 - MIR3 SINE MIR -44 164 104 1846 155 0 19 chr9 17048484 17048793 -100813834 - AluJo SINE Alu -9 303 1 3027 188 42 20 chr9 17048879 17049834 -100812793 + L1M1 LINE L1 13 1100 -6465 5579 101 4 18 chr9 17050186 17051006 -100811621 - L1MA2 LINE L1 -6 6298 5491 874 293 216 5 chr9 17051008 17051519 -100811108 + L2 LINE L2 2703 3312 -1 855 264 90 41 chr9 17052866 17053253 -100809374 - MLT1I LTR MaLR -3 406 1 188 275 99 11 chr9 17053760 17053851 -100808776 + L3b LINE CR1 1363 1461 -122 493 292 71 6 chr9 17053862 17054030 -100808597 + MER5A DNA MER1_type 11 189 0 399 21 0 0 chr9 17056803 17056851 -100805776 + (TG)n Simple_repeat Simple_repeat 2 49 0 447 19 0 0 chr9 17058014 17058066 -100804561 + (TG)n Simple_repeat Simple_repeat 1 52 0 200 189 0 0 chr9 17058382 17058419 -100804208 + (CA)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chr9 17058504 17058529 -100804098 + AT_rich Low_complexity Low_complexity 1 25 0 35 63 0 0 chr9 17060123 17060186 -100802441 + AT_rich Low_complexity Low_complexity 1 63 0 468 323 25 108 chr9 17060828 17061190 -100801437 + L2 LINE L2 2939 3270 -2 367 232 87 80 chr9 17061547 17061685 -100800942 - L2 LINE L2 -4 3309 3171 298 248 7 131 chr9 17062243 17062388 -100800239 - MIR SINE MIR -111 151 25 261 75 0 0 chr9 17062600 17062640 -100799987 + (CA)n Simple_repeat Simple_repeat 1 40 0 258 323 60 8 chr9 17063568 17063701 -100798926 - MIR SINE MIR -5 257 118 351 251 179 17 chr9 17063708 17063887 -100798740 - L2 LINE L2 0 3313 3106 574 295 40 0 chr9 17063908 17064132 -100798495 - L2 LINE L2 -342 2972 2740 590 277 100 13 chr9 17064283 17064514 -100798113 - MLT1J LTR MaLR -252 259 9 1217 291 18 52 chr9 17064520 17065080 -100797547 - L2 LINE L2 -573 2741 2201 1827 191 135 12 chr9 17065994 17066408 -100796219 + MLT1C LTR MaLR 1 465 -2 2761 132 21 7 chr9 17066869 17067293 -100795334 - MSTB1 LTR MaLR -2 430 1 579 215 126 16 chr9 17067743 17067934 -100794693 - MER102a DNA MER1_type -27 303 92 5724 145 41 36 chr9 17067934 17069105 -100793522 + L1MC2 LINE L1 5161 6326 -18 2395 96 0 0 chr9 17069106 17069407 -100793220 + AluSg SINE Alu 1 301 -9 288 208 123 85 chr9 17069409 17069539 -100793088 - MER102a DNA MER1_type -195 135 1 454 261 42 8 chr9 17069622 17069741 -100792886 - MIR3 SINE MIR -54 154 32 201 357 39 8 chr9 17070326 17070455 -100792172 - MIR SINE MIR -54 208 76 590 293 38 14 chr9 17070854 17071097 -100791530 - MIR SINE MIR -15 247 2 213 264 99 22 chr9 17071097 17071166 -100791461 - MIR SINE MIR -32 230 155 505 235 129 18 chr9 17071169 17071339 -100791288 + MIR SINE MIR 15 203 -59 350 185 0 25 chr9 17071349 17071430 -100791197 - MIR SINE MIR -113 149 71 207 167 67 67 chr9 17072628 17072688 -100789939 - MIR3 SINE MIR -22 186 127 201 352 0 11 chr9 17072857 17072945 -100789682 + GA-rich Low_complexity Low_complexity 4 90 0 653 279 4 51 chr9 17074010 17074247 -100788380 - MIR SINE MIR 0 262 37 257 270 130 0 chr9 17074340 17074440 -100788187 - MIR SINE MIR -109 153 41 341 242 53 0 chr9 17075912 17076007 -100786620 - L1MA9 LINE L1 -602 5703 5604 * 498 147 0 21 chr9 17075993 17076076 -100786551 + L1MA9 LINE L1 5701 5783 -508 189 0 0 0 chr9 17076076 17076097 -100786530 + (TG)n Simple_repeat Simple_repeat 2 22 0 498 147 0 21 chr9 17076097 17076108 -100786519 + L1MA9 LINE L1 5783 5793 -498 243 154 36 18 chr9 17076108 17076218 -100786409 + (TA)n Simple_repeat Simple_repeat 1 112 0 2240 176 52 17 chr9 17076235 17076703 -100785924 + L1MA9 LINE L1 5783 6274 -38 723 245 187 30 chr9 17076849 17077180 -100785447 - MLT1K LTR MaLR -68 520 138 452 321 70 56 chr9 17077777 17078387 -100784240 - L1MDa LINE L1 -2799 3741 3123 252 299 36 21 chr9 17078678 17078872 -100783755 - L1MDa LINE L1 -3747 2793 2597 303 276 165 0 chr9 17078874 17079044 -100783583 - L1MDa LINE L1 -3923 2617 2420 454 329 56 48 chr9 17079914 17080418 -100782209 - HAL1 LINE L1 -1070 1437 930 2303 82 0 0 chr9 17080703 17080994 -100781633 - AluY SINE Alu -20 291 1 1859 143 40 24 chr9 17081710 17082038 -100780589 + MER44D DNA MER2_type 3 605 -4 298 154 0 19 chr9 17082098 17082150 -100780477 + MLT1L LTR MaLR 135 185 -430 296 277 21 64 chr9 17082270 17082364 -100780263 + MLT1L LTR MaLR 341 430 -185 372 94 0 0 chr9 17082807 17082860 -100779767 + (CTG)n Simple_repeat Simple_repeat 1 53 0 301 328 40 0 chr9 17083146 17083271 -100779356 - MIR SINE MIR -15 247 118 936 101 0 0 chr9 17084227 17084346 -100778281 - AluSq/x SINE Alu -193 119 1 254 191 0 15 chr9 17084905 17084973 -100777654 + GA-rich Low_complexity Low_complexity 2 68 0 212 95 71 0 chr9 17086069 17086111 -100776516 + (ATATG)n Simple_repeat Simple_repeat 5 49 0 340 319 55 12 chr9 17086126 17086289 -100776338 - MIR SINE MIR -45 217 48 2629 200 76 0 chr9 17086663 17087174 -100775453 - MLT1F1 LTR MaLR 0 567 18 1618 188 65 3 chr9 17087184 17087477 -100775150 - AluJo SINE Alu -1 311 1 446 279 31 0 chr9 17087735 17087864 -100774763 - MIR SINE MIR -4 258 126 241 295 25 82 chr9 17087907 17088029 -100774598 - L2 LINE L2 -166 3106 2992 9176 38 0 0 chr9 17088745 17090600 -100772027 - L1PA4 LINE L1 0 6155 4299 1251 110 31 0 chr9 17091622 17091813 -100770814 + L1PA8 LINE L1 5974 6170 -2 2088 137 3 0 chr9 17092041 17092347 -100770280 - AluJb SINE Alu -5 307 1 557 270 181 0 chr9 17092470 17092674 -100769953 - MIR SINE MIR -13 249 9 198 143 0 0 chr9 17093070 17093105 -100769522 + (TG)n Simple_repeat Simple_repeat 2 36 0 327 284 16 24 chr9 17093926 17094053 -100768574 + CT-rich Low_complexity Low_complexity 1 126 0 311 318 65 61 chr9 17095791 17096033 -100766594 - MIR SINE MIR -12 250 10 24 0 0 0 chr9 17096090 17096114 -100766513 + AT_rich Low_complexity Low_complexity 1 24 0 315 149 287 11 chr9 17096349 17096443 -100766184 + MER117 DNA MER1_type 46 165 -32 226 243 40 14 chr9 17096495 17096569 -100766058 - MIR3 SINE MIR -48 160 85 226 268 153 38 chr9 17096712 17096869 -100765758 + MIR SINE MIR 37 211 -51 207 0 0 0 chr9 17099282 17099305 -100763322 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 461 274 93 30 chr9 17099939 17100140 -100762487 - MIR SINE MIR -41 221 9 21 36 0 0 chr9 17100416 17100444 -100762183 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr9 17100496 17100525 -100762102 + AT_rich Low_complexity Low_complexity 1 29 0 2469 82 3 0 chr9 17101317 17101620 -100761007 - AluY SINE Alu -7 304 1 268 161 54 0 chr9 17102688 17102744 -100759883 - MIR SINE MIR -64 144 86 262 320 8 16 chr9 17103345 17103467 -100759160 + MER103 DNA DNA 28 148 -18 314 214 112 31 chr9 17103936 17104034 -100758593 + MIR SINE MIR 36 141 -67 181 277 60 48 chr9 17106246 17106329 -100756298 + MIR SINE MIR 8 91 -171 1439 194 64 53 chr9 17107391 17107752 -100754875 - MLT1A1 LTR MaLR 0 365 1 195 42 0 0 chr9 17109640 17109664 -100752963 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2033 130 0 11 chr9 17109664 17109972 -100752655 - AluSx SINE Alu 0 305 1 4359 269 72 44 chr9 17110255 17113007 -100749620 - L1ME3A LINE L1 -5 6165 3325 184 301 115 27 chr9 17113664 17113847 -100748780 - L2 LINE L2 -1226 2088 1890 233 291 149 29 chr9 17113952 17114193 -100748434 - L2 LINE L2 -2 3311 3042 647 275 77 13 chr9 17115733 17115966 -100746661 - MIR SINE MIR 0 262 15 180 0 0 0 chr9 17116050 17116070 -100746557 + (T)n Simple_repeat Simple_repeat 1 20 0 269 285 22 66 chr9 17117790 17117927 -100744700 - MLT1K LTR MaLR -2 586 456 185 340 28 0 chr9 17118265 17118371 -100744256 - L2 LINE L2 -28 3285 3177 294 29 0 0 chr9 17118734 17118769 -100743858 + (TG)n Simple_repeat Simple_repeat 2 36 0 198 189 0 0 chr9 17118986 17119023 -100743604 - L2 LINE L2 -8 3305 3269 180 0 0 0 chr9 17120702 17120722 -100741905 + (A)n Simple_repeat Simple_repeat 1 20 0 369 291 111 6 chr9 17120981 17121153 -100741474 - MIR SINE MIR -14 248 59 2451 186 32 18 chr9 17121330 17121512 -100741115 + L1MB1 LINE L1 5649 5827 -362 2451 89 10 0 chr9 17121512 17121816 -100740811 - AluSg SINE Alu -3 307 1 2451 186 32 18 chr9 17121816 17122129 -100740498 + L1MB1 LINE L1 5827 6151 -38 2073 113 4 0 chr9 17122150 17122424 -100740203 + AluSx SINE Alu 1 275 -37 215 30 0 30 chr9 17122428 17122461 -100740166 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 456 337 50 20 chr9 17122601 17122803 -100739824 - L3 LINE CR1 -2 1575 1368 1460 221 51 3 chr9 17124158 17124529 -100738098 - MER97a DNA MER1_type? 0 894 506 32381 106 16 52 chr9 17124563 17130961 -100731666 + L1PA7 LINE L1 12 6170 0 762 257 87 74 chr9 17130961 17131327 -100731300 - MER97b DNA MER1_type? -561 492 122 551 256 109 14 chr9 17133071 17133282 -100729345 - L2 LINE L2 -2 3311 3081 1816 169 0 10 chr9 17133735 17134036 -100728591 + AluJb SINE Alu 1 298 -14 483 286 58 6 chr9 17134287 17134458 -100728169 + MIR SINE MIR 12 191 -71 319 314 29 0 chr9 17134533 17134635 -100727992 + L1MC4 LINE L1 7791 7895 -147 421 329 44 40 chr9 17134723 17135021 -100727606 + L2 LINE L2 2181 2479 -835 4421 225 119 72 chr9 17135021 17136697 -100725930 + MER52A LTR ERV1 1 1755 0 507 306 71 24 chr9 17136701 17137242 -100725385 + L2 LINE L2 2481 3054 -218 385 193 0 68 chr9 17139247 17139335 -100723292 + L1MB4 LINE L1 6065 6146 -34 193 304 11 33 chr9 17139563 17139655 -100722972 + MIR3 SINE MIR 101 190 -18 475 177 50 141 chr9 17139664 17139862 -100722765 + MLT1J LTR MaLR 1 180 -331 2447 115 16 19 chr9 17140511 17140876 -100721751 + THE1B LTR MaLR 1 364 0 548 261 15 36 chr9 17141781 17141976 -100720651 + MIR SINE MIR 17 207 -55 487 263 96 14 chr9 17141978 17142187 -100720440 - LTR33A LTR ERVL -1 522 297 278 49 0 24 chr9 17142357 17142398 -100720229 + (CTG)n Simple_repeat Simple_repeat 3 42 0 190 369 0 0 chr9 17142678 17142743 -100719884 + MIR SINE MIR 68 132 -76 22 0 0 0 chr9 17144627 17144649 -100717978 + AT_rich Low_complexity Low_complexity 1 22 0 378 0 0 0 chr9 17145708 17145750 -100716877 + (CA)n Simple_repeat Simple_repeat 1 42 0 625 308 16 16 chr9 17146177 17146427 -100716200 + MIR SINE MIR 13 262 0 585 88 0 0 chr9 17146432 17146512 -100716115 + MADE1 DNA Mariner 1 80 0 201 339 107 8 chr9 17147293 17147414 -100715213 + MIR SINE MIR 17 149 -113 194 305 114 8 chr9 17148537 17148668 -100713959 + L2 LINE L2 3127 3271 -1 229 175 70 0 chr9 17149521 17149578 -100713049 + MLT1L LTR MaLR 220 280 -335 333 209 121 22 chr9 17149713 17149804 -100712823 + MLT1L LTR MaLR 511 610 -5 2515 174 30 4 chr9 17150335 17150806 -100711821 + L1MB7 LINE L1 5697 6179 -5 853 224 8 42 chr9 17150826 17151063 -100711564 + MIR SINE MIR 34 262 0 312 27 0 0 chr9 17151302 17151339 -100711288 + (CA)n Simple_repeat Simple_repeat 2 38 0 277 244 24 12 chr9 17152024 17152106 -100710521 - L2 LINE L2 -6 3307 3225 324 226 16 0 chr9 17152815 17152877 -100709750 + L1M3 LINE L1 5630 5692 -491 * 4440 146 31 33 chr9 17152875 17153684 -100708943 + L1MB3 LINE L1 5375 6181 -2 589 274 107 5 chr9 17155493 17155690 -100706937 - MIR SINE MIR -20 242 26 215 247 0 106 chr9 17156038 17156123 -100706504 + MIR SINE MIR 105 180 -82 301 289 33 0 chr9 17156554 17156675 -100705952 + LTR16A1 LTR ERVL 322 446 -11 274 269 182 67 chr9 17156705 17157347 -100705280 + L2 LINE L2 2248 2963 -351 499 302 98 10 chr9 17157965 17158170 -100704457 - MIR SINE MIR -20 242 20 199 227 0 0 chr9 17158421 17158465 -100704162 + L2 LINE L2 3265 3308 -5 378 275 79 32 chr9 17159263 17159452 -100703175 + L2 LINE L2 3116 3313 0 279 349 9 0 chr9 17159506 17159615 -100703012 - MIR SINE MIR -61 147 38 1977 174 17 50 chr9 17160644 17161047 -100701580 - MLT1B LTR MaLR 0 390 1 1570 157 102 41 chr9 17161791 17162134 -100700493 + MLT1A1 LTR MaLR 2 365 0 23 33 0 0 chr9 17162477 17162507 -100700120 + AT_rich Low_complexity Low_complexity 1 30 0 2021 151 0 7 chr9 17162685 17162990 -100699637 + AluJb SINE Alu 3 305 -7 192 281 78 0 chr9 17163701 17163765 -100698862 + L2 LINE L2 3196 3264 -8 324 300 60 10 chr9 17165405 17165505 -100697122 + MIR SINE MIR 19 123 -85 464 304 38 59 chr9 17165542 17166019 -100696608 + L2 LINE L2 1901 2367 -947 691 246 35 100 chr9 17166251 17166681 -100695946 - MLT1J LTR MaLR -6 505 104 289 266 0 13 chr9 17166731 17166810 -100695817 - MLT1L LTR MaLR -537 78 1 836 216 5 47 chr9 17167757 17167970 -100694657 + MER63A DNA MER1_type 1 204 -6 181 274 20 0 chr9 17168339 17168390 -100694237 + L2 LINE L2 3261 3312 -1 269 352 11 0 chr9 17168488 17168579 -100694048 + L2 LINE L2 3179 3270 -2 22 0 0 0 chr9 17168759 17168781 -100693846 + AT_rich Low_complexity Low_complexity 1 22 0 325 250 92 25 chr9 17170575 17170695 -100691932 - L1M2 LINE L1 -5924 925 798 195 129 0 0 chr9 17170789 17170820 -100691807 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 367 335 146 14 chr9 17171042 17171498 -100691129 + L2 LINE L2 2546 3072 -241 227 352 94 8 chr9 17171755 17171883 -100690744 - MIR3 SINE MIR -28 180 42 2047 109 0 40 chr9 17171909 17172036 -100690591 + AluSx SINE Alu 8 138 -174 198 0 0 0 chr9 17172036 17172058 -100690569 + (CCA)n Simple_repeat Simple_repeat 1 22 0 2047 109 0 40 chr9 17172058 17172234 -100690393 + AluSx SINE Alu 138 299 -13 1427 191 39 25 chr9 17172321 17172677 -100689950 + MLT1A1 LTR MaLR 5 365 0 432 265 30 15 chr9 17172736 17172936 -100689691 + L1ME3A LINE L1 5749 5951 -219 310 290 59 37 chr9 17173872 17174106 -100688521 + MLT1J1 LTR MaLR 4 278 -168 227 167 30 45 chr9 17174379 17174445 -100688182 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 31 26 0 0 chr9 17175453 17175491 -100687136 + AT_rich Low_complexity Low_complexity 1 38 0 207 209 0 0 chr9 17176176 17176219 -100686408 + T-rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 17176727 17176748 -100685879 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 17177017 17177039 -100685588 + AT_rich Low_complexity Low_complexity 1 22 0 767 248 113 48 chr9 17177243 17177553 -100685074 - L2 LINE L2 -575 2739 2410 547 246 77 10 chr9 17177580 17177775 -100684852 - L1ME LINE L1 -302 5819 5612 41385 45 5 1 chr9 17177992 17184118 -100678509 + L1PA4 LINE L1 2 6152 -3 207 287 101 23 chr9 17184250 17184379 -100678248 - MIR SINE MIR 0 262 124 357 232 30 24 chr9 17184991 17185159 -100677468 + (TA)n Simple_repeat Simple_repeat 2 170 0 23 0 0 0 chr9 17186238 17186261 -100676366 + AT_rich Low_complexity Low_complexity 1 23 0 517 272 111 83 chr9 17186733 17187130 -100675497 - HAL1 LINE L1 -1231 1276 869 801 249 180 74 chr9 17187132 17187655 -100674972 + MLT1G1 LTR MaLR 1 524 -6 339 293 50 61 chr9 17187706 17187904 -100674723 - HAL1 LINE L1 -1633 874 679 537 303 53 14 chr9 17189811 17190019 -100672608 - MIR SINE MIR -11 251 36 1916 153 7 3 chr9 17190421 17190709 -100671918 + AluJb SINE Alu 1 289 -23 2395 86 0 10 chr9 17191752 17192055 -100670572 - AluY SINE Alu -11 300 1 2463 143 38 0 chr9 17193112 17193531 -100669096 - Tigger3(Golem) DNA MER2_type -1 3028 2594 946 146 65 0 chr9 17193527 17193726 -100668901 - Tigger3(Golem) DNA MER2_type -536 2493 2282 * 401 198 26 103 chr9 17193723 17193765 -100668862 - Tigger3(Golem) DNA MER2_type -494 108 64 * 2336 97 0 13 chr9 17193765 17194075 -100668552 - AluSx SINE Alu -6 306 1 401 198 26 103 chr9 17194075 17194148 -100668479 - Tigger3(Golem) DNA MER2_type -538 64 2 502 253 68 37 chr9 17194540 17194702 -100667925 - MIR SINE MIR -48 214 48 2228 109 3 0 chr9 17196216 17196510 -100666117 - AluSq SINE Alu -18 295 1 25 0 0 0 chr9 17196733 17196758 -100665869 + AT_rich Low_complexity Low_complexity 1 25 0 522 307 66 53 chr9 17196964 17197137 -100665490 - MLT1I LTR MaLR -24 385 205 2394 47 47 0 chr9 17197137 17197434 -100665193 - AluY SINE Alu 0 311 1 522 307 66 53 chr9 17197434 17197579 -100665048 - MLT1I LTR MaLR -204 205 63 615 160 0 0 chr9 17199415 17199515 -100663112 - AluJ/FLAM SINE Alu -212 100 1 422 332 65 20 chr9 17200182 17200381 -100662246 + MIR SINE MIR 5 212 -50 258 224 0 0 chr9 17200466 17200515 -100662112 - MIR SINE MIR -1 261 213 23 0 0 0 chr9 17202014 17202037 -100660590 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr9 17202542 17202563 -100660064 + AT_rich Low_complexity Low_complexity 1 21 0 612 128 73 0 chr9 17203403 17203512 -100659115 + L1MB7 LINE L1 6068 6184 0 31 0 0 0 chr9 17203560 17203591 -100659036 + AT_rich Low_complexity Low_complexity 1 31 0 241 182 0 26 chr9 17205054 17205131 -100657496 + (TA)n Simple_repeat Simple_repeat 2 76 0 211 303 30 0 chr9 17208797 17208863 -100653764 + MIR3 SINE MIR 120 187 -21 35 41 0 0 chr9 17209512 17209561 -100653066 + AT_rich Low_complexity Low_complexity 1 49 0 205 211 18 0 chr9 17210094 17210151 -100652476 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr9 17210215 17210237 -100652390 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr9 17212123 17212166 -100650461 + AT_rich Low_complexity Low_complexity 1 43 0 11322 211 57 21 chr9 17212399 17216934 -100645693 - L1MB5 LINE L1 -36 5962 1237 10601 202 44 68 chr9 17216951 17218210 -100644417 - L1MB1 LINE L1 -1 6403 5115 1931 155 0 3 chr9 17218210 17218506 -100644121 - AluSx SINE Alu -17 295 1 10601 202 44 68 chr9 17218506 17218800 -100643827 - L1MB1 LINE L1 -1289 5115 4815 2017 133 3 7 chr9 17218800 17219101 -100643526 - AluSx SINE Alu -12 300 1 10601 202 44 68 chr9 17219101 17220420 -100642207 - L1MB1 LINE L1 -1589 4815 3466 1588 166 7 41 chr9 17220420 17220749 -100641878 - AluJo SINE Alu 0 319 1 10601 202 44 68 chr9 17220749 17221718 -100640909 - L1MB1 LINE L1 -2938 3466 2475 414 0 0 0 chr9 17221718 17221764 -100640863 + (TG)n Simple_repeat Simple_repeat 1 46 0 10601 202 44 68 chr9 17221764 17222967 -100639660 - L1MB1 LINE L1 -3929 2475 1457 3004 248 69 74 chr9 17223023 17224245 -100638382 - L1MB5 LINE L1 -4675 1216 1 303 200 14 14 chr9 17224242 17224312 -100638315 - L1M4c LINE L1 -4727 1919 1850 * 1645 207 45 61 chr9 17224344 17224852 -100637775 - L1M4c LINE L1 -5213 1329 830 608 278 0 11 chr9 17224849 17225025 -100637602 - L1M4c LINE L1 -6366 176 3 * 2204 43 0 7 chr9 17225105 17225382 -100637245 - L1PA5 LINE L1 -2 6152 5878 369 242 0 11 chr9 17226108 17226203 -100636424 - L1MC4 LINE L1 -1335 6707 6614 2825 100 28 23 chr9 17226211 17226641 -100635986 + Tigger2a DNA MER2_type 2 433 -1 237 65 0 0 chr9 17226642 17226673 -100635954 + (TG)n Simple_repeat Simple_repeat 2 32 0 426 314 33 0 chr9 17227584 17227705 -100634922 + L2 LINE L2 3188 3312 -1 24 0 0 0 chr9 17228039 17228063 -100634564 + AT_rich Low_complexity Low_complexity 1 24 0 1668 163 77 19 chr9 17229641 17229966 -100632661 + MER2 DNA MER2_type 1 344 0 23 0 0 0 chr9 17230201 17230224 -100632403 + AT_rich Low_complexity Low_complexity 1 23 0 180 97 0 0 chr9 17230308 17230339 -100632288 + (T)n Simple_repeat Simple_repeat 1 31 0 1125 196 48 0 chr9 17230755 17230964 -100631663 - MER58A DNA MER1_type 0 224 6 33 56 0 0 chr9 17231714 17231768 -100630859 + AT_rich Low_complexity Low_complexity 1 54 0 24 53 0 0 chr9 17235812 17235850 -100626777 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr9 17236612 17236634 -100625993 + AT_rich Low_complexity Low_complexity 1 22 0 468 307 28 33 chr9 17237113 17237328 -100625299 - MIR SINE MIR 0 262 49 279 0 0 0 chr9 17237976 17238007 -100624620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 225 339 27 0 chr9 17238008 17238120 -100624507 + MIR SINE MIR 148 262 0 5639 133 25 7 chr9 17238767 17239934 -100622693 + L1PA13 LINE L1 4978 6160 -3 564 289 44 88 chr9 17239914 17240100 -100622527 - L1ME4a LINE L1 -66 6055 5862 * 1527 148 29 0 chr9 17240100 17240378 -100622249 - L1MA4 LINE L1 0 6300 6015 564 289 44 88 chr9 17240378 17240711 -100621916 - L1ME4a LINE L1 -259 5862 5559 458 244 0 8 chr9 17241127 17241246 -100621381 - L1MA7 LINE L1 0 6291 6174 2057 97 7 45 chr9 17241264 17241572 -100621055 - AluSx SINE Alu -16 296 1 28 61 0 0 chr9 17241573 17241622 -100621005 + AT_rich Low_complexity Low_complexity 1 49 0 5308 159 42 8 chr9 17242143 17243345 -100619282 - L1MA4 LINE L1 -12 6288 5046 861 110 0 0 chr9 17243777 17243931 -100618696 + (TTCC)n Simple_repeat Simple_repeat 1 154 0 224 57 0 29 chr9 17243933 17243968 -100618659 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 1543 162 0 97 chr9 17243968 17244289 -100618338 - AluJo SINE Alu -11 291 2 297 216 120 56 chr9 17245135 17245260 -100617367 + MIR SINE MIR 120 252 -10 368 259 74 51 chr9 17245525 17245726 -100616901 + MIR SINE MIR 4 207 -55 5582 145 59 4 chr9 17246996 17247689 -100614938 + L1MA9 LINE L1 4928 5581 -731 306 0 0 0 chr9 17247689 17247723 -100614904 + (CA)n Simple_repeat Simple_repeat 2 35 0 5582 145 59 4 chr9 17247723 17248192 -100614435 + L1MA9 LINE L1 5581 6287 -25 487 238 10 0 chr9 17248419 17248520 -100614107 - MER93a LTR ERV1 -2 400 299 26 88 0 0 chr9 17248632 17248700 -100613927 + AT_rich Low_complexity Low_complexity 1 68 0 608 173 30 95 chr9 17249791 17249883 -100612744 + MER46C DNA MER2_type 176 254 -84 1904 147 0 10 chr9 17249883 17250176 -100612451 - AluSx SINE Alu 0 312 23 608 173 30 95 chr9 17250176 17250251 -100612376 + MER46C DNA MER2_type 254 332 -6 217 254 18 0 chr9 17251248 17251303 -100611324 - L2 LINE L2 -211 3061 3006 199 227 27 93 chr9 17251431 17251506 -100611121 + MIR3 SINE MIR 132 201 -7 333 127 0 0 chr9 17251643 17251706 -100610921 + L1MA10 LINE L1 6271 6333 -1 2722 143 0 7 chr9 17253059 17253500 -100609127 - L1PA11 LINE L1 -1914 4232 3795 6352 146 19 2 chr9 17253500 17255386 -100607241 + L1PA11 LINE L1 4247 6174 0 1105 285 152 11 chr9 17255387 17255919 -100606708 + L2 LINE L2 2707 3313 0 530 291 73 7 chr9 17258813 17258964 -100603663 + MIR SINE MIR 22 182 -80 196 247 118 24 chr9 17258977 17259062 -100603565 + MIR SINE MIR 143 235 -27 3747 205 75 51 chr9 17259634 17260978 -100601649 - L1MD2 LINE L1 -15 6344 4968 1522 244 66 17 chr9 17260986 17261562 -100601065 + MLT1E3 LTR MaLR 1 608 -16 188 247 13 65 chr9 17261627 17261704 -100600923 - L2 LINE L2 -2278 1036 964 266 236 181 28 chr9 17261896 17262040 -100600587 - Charlie7 DNA MER1_type -1 2611 2446 1951 170 29 10 chr9 17262080 17262463 -100600164 + L1MC1 LINE L1 5944 6333 0 535 300 96 8 chr9 17262570 17262810 -100599817 + Charlie7 DNA MER1_type 96 356 -2256 1286 234 157 23 chr9 17262810 17263182 -100599445 + Charlie7 DNA MER1_type 1479 1800 -812 312 27 0 0 chr9 17263182 17263219 -100599408 + (TA)n Simple_repeat Simple_repeat 2 38 0 1286 234 157 23 chr9 17263219 17263445 -100599182 + Charlie7 DNA MER1_type 1800 2157 -455 276 119 0 0 chr9 17263445 17263487 -100599140 - MSTA LTR MaLR 0 428 387 42720 48 7 0 chr9 17263489 17269595 -100593032 + L1PA4 LINE L1 7 6151 -4 789 201 165 27 chr9 17269595 17269907 -100592720 - MSTA LTR MaLR -27 401 1 261 169 62 0 chr9 17270002 17270067 -100592560 + Charlie7 DNA MER1_type 2278 2346 -266 23 33 0 0 chr9 17270603 17270633 -100591994 + AT_rich Low_complexity Low_complexity 1 30 0 2324 174 70 0 chr9 17270763 17271104 -100591523 - L1PB4 LINE L1 -2 6154 5771 207 0 0 0 chr9 17271104 17271127 -100591500 + (CA)n Simple_repeat Simple_repeat 1 23 0 2324 174 70 0 chr9 17271127 17271244 -100591383 - L1PB4 LINE L1 -385 5771 5664 1215 173 4 0 chr9 17271253 17271478 -100591149 - L1PB4 LINE L1 -1254 4892 4667 15222 100 10 1 chr9 17271478 17274489 -100588138 - L1PA7 LINE L1 -6 6463 3432 10959 109 5 1 chr9 17274489 17276027 -100586600 - L1PA7 LINE L1 -4910 1551 8 4533 184 17 2 chr9 17276036 17276958 -100585669 - L1PB4 LINE L1 -1478 4668 3733 35 0 0 0 chr9 17277030 17277065 -100585562 + AT_rich Low_complexity Low_complexity 1 35 0 351 196 62 27 chr9 17277162 17277274 -100585353 - MIR SINE MIR -10 252 137 529 333 46 17 chr9 17278980 17279217 -100583410 + MIR SINE MIR 16 259 -3 268 298 16 65 chr9 17279217 17279341 -100583286 - MIR SINE MIR -66 196 79 216 333 30 117 chr9 17279920 17280151 -100582476 - L2 LINE L2 -84 3188 2978 673 221 22 144 chr9 17282186 17282553 -100580074 + L2 LINE L2 2987 3308 -5 2722 112 35 7 chr9 17283459 17284119 -100578508 - L1MA8 LINE L1 -592 5699 5025 3034 153 40 17 chr9 17284121 17284715 -100577912 + L1MA8 LINE L1 5680 6287 -4 240 239 56 0 chr9 17284717 17284788 -100577839 - MLT1L LTR MaLR -68 547 473 211 286 0 0 chr9 17284917 17284987 -100577640 + (TA)n Simple_repeat Simple_repeat 1 70 0 26 30 0 0 chr9 17285004 17285037 -100577590 + AT_rich Low_complexity Low_complexity 1 33 0 285 268 14 0 chr9 17285060 17285131 -100577496 - MLT1J LTR MaLR -316 195 124 410 303 136 23 chr9 17285180 17285401 -100577226 + MIR SINE MIR 17 262 0 287 354 84 17 chr9 17285568 17285913 -100576714 + L2 LINE L2 1718 2085 -1229 346 330 118 44 chr9 17285933 17286545 -100576082 - L2 LINE L2 0 3313 2650 248 298 141 0 chr9 17286560 17286681 -100575946 - L2 LINE L2 -851 2463 2326 184 298 96 58 chr9 17286889 17286993 -100575634 - L2 LINE L2 -45 3268 3161 329 278 225 31 chr9 17287505 17287696 -100574931 + MIR SINE MIR 25 252 -10 191 356 0 0 chr9 17288942 17289001 -100573626 + MIR SINE MIR 1 59 -203 219 299 183 52 chr9 17289047 17289392 -100573235 - L2 LINE L2 -51 3221 2832 236 229 55 0 chr9 17289944 17290053 -100572574 + (TA)n Simple_repeat Simple_repeat 1 115 0 262 358 89 46 chr9 17290291 17290727 -100571900 + L2 LINE L2 2286 2740 -574 386 161 0 0 chr9 17291658 17291744 -100570883 + L1M4 LINE L1 4954 5039 -1107 1110 181 18 0 chr9 17291758 17291984 -100570643 - L1MA6 LINE L1 -5 6295 6066 11086 162 56 18 chr9 17291984 17294676 -100567951 - L1MA6 LINE L1 -610 5690 2892 4263 169 54 22 chr9 17294669 17295083 -100567544 + L1MB5 LINE L1 4954 5354 -820 * 1646 165 18 4 chr9 17295083 17295355 -100567272 + AluJo SINE Alu 37 312 0 4263 169 54 22 chr9 17295355 17296124 -100566503 + L1MB5 LINE L1 5354 6173 -1 524 337 15 35 chr9 17296183 17296385 -100566242 + MIR3 SINE MIR 2 199 -9 22 0 0 0 chr9 17296476 17296498 -100566129 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr9 17298274 17298305 -100564322 + AT_rich Low_complexity Low_complexity 1 31 0 494 295 98 12 chr9 17299029 17299202 -100563425 - MIR SINE MIR -60 202 15 443 215 43 11 chr9 17301700 17301793 -100560834 + FLAM_A SINE Alu 20 115 -27 489 256 83 0 chr9 17301829 17301950 -100560677 + MIR3 SINE MIR 57 187 -21 238 321 64 18 chr9 17302874 17302983 -100559644 + L2 LINE L2 2872 2985 -287 267 295 48 38 chr9 17304487 17304592 -100558035 + L2 LINE L2 3167 3272 0 352 321 25 3 chr9 17305375 17305561 -100557066 - MIR SINE MIR -5 257 26 609 14 0 0 chr9 17305762 17305832 -100556795 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 7708 18 2 0 chr9 17305832 17306994 -100555633 - L1PA3 LINE L1 -10 6145 4981 1238 126 0 0 chr9 17307105 17307280 -100555347 + AluSg/x SINE Alu 137 311 -1 198 268 99 0 chr9 17307280 17307351 -100555276 + MIR SINE MIR 150 227 -35 192 77 0 0 chr9 17309258 17309284 -100553343 + (A)n Simple_repeat Simple_repeat 1 26 0 212 317 99 19 chr9 17309675 17309836 -100552791 + L2 LINE L2 2623 2796 -518 272 216 0 0 chr9 17309853 17309904 -100552723 + MLT1F1 LTR MaLR 17 67 -500 263 322 176 5 chr9 17309970 17310169 -100552458 + L2 LINE L2 92 324 -2990 312 253 20 20 chr9 17310175 17310274 -100552353 + MER112 DNA MER1_type 153 251 -9 234 171 0 0 chr9 17310437 17310478 -100552149 - Charlie8 DNA MER1_type -2 2415 2375 426 263 63 63 chr9 17310643 17310818 -100551809 + MIR SINE MIR 60 234 -28 477 257 99 13 chr9 17310842 17310994 -100551633 - Charlie8 DNA MER1_type -2234 183 19 486 283 75 19 chr9 17312471 17312683 -100549944 - MIR SINE MIR -33 229 6 239 280 167 24 chr9 17312737 17312905 -100549722 - L2 LINE L2 -87 3185 2994 213 304 215 7 chr9 17313878 17314013 -100548614 - MIR SINE MIR -14 248 86 586 281 209 0 chr9 17314860 17315109 -100547518 + Charlie2 DNA MER1_type 1 301 -2481 462 240 156 28 chr9 17315234 17315413 -100547214 + Charlie2a DNA MER1_type 1462 1663 -1199 435 236 81 20 chr9 17315422 17315570 -100547057 + Charlie2a DNA MER1_type 2705 2861 -1 931 198 36 1 chr9 17316576 17316888 -100545739 + MLT1A1 LTR MaLR 1 365 0 1836 147 0 45 chr9 17317379 17317693 -100544934 + AluJb SINE Alu 1 300 -12 192 238 0 79 chr9 17319541 17319604 -100543023 - L2 LINE L2 -94 3219 3162 200 42 0 0 chr9 17319705 17319729 -100542898 - MIR SINE MIR -63 145 122 1483 109 17 30 chr9 17319736 17319966 -100542661 - THE1C LTR MaLR 0 375 149 21 0 0 0 chr9 17320656 17320677 -100541950 + AT_rich Low_complexity Low_complexity 1 21 0 213 94 0 0 chr9 17321477 17321509 -100541118 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 389 242 61 8 chr9 17321618 17321750 -100540877 - L1ME4a LINE L1 -2 6119 5981 2329 226 43 17 chr9 17321817 17322428 -100540199 + MLT1E3 LTR MaLR 1 624 0 301 298 121 8 chr9 17323193 17323317 -100539310 - L1ME4a LINE L1 -410 5711 5574 1649 199 119 26 chr9 17323575 17324002 -100538625 - MLT1C LTR MaLR 0 467 1 226 295 13 39 chr9 17324108 17324186 -100538441 + MIR SINE MIR 186 261 -1 306 73 0 0 chr9 17325445 17325486 -100537141 + (CA)n Simple_repeat Simple_repeat 2 42 0 219 114 0 0 chr9 17325733 17325768 -100536859 + (CAG)n Simple_repeat Simple_repeat 1 35 0 325 271 0 0 chr9 17327081 17327151 -100535476 + MIR SINE MIR 79 148 -114 264 245 179 32 chr9 17327176 17327320 -100535307 + MIR SINE MIR 5 163 -77 2517 160 38 2 chr9 17327595 17327916 -100534711 - Tigger2a DNA MER2_type -2274 434 93 429 20 0 0 chr9 17327916 17327966 -100534661 + (GGA)n Simple_repeat Simple_repeat 2 51 0 2517 160 38 2 chr9 17327966 17328063 -100534564 - Tigger2a DNA MER2_type -2615 93 1 637 353 37 12 chr9 17328149 17328393 -100534234 - MIR SINE MIR -9 253 4 338 324 75 29 chr9 17328502 17328675 -100533952 - MIR SINE MIR -74 188 8 282 258 32 21 chr9 17329519 17329612 -100533015 + MIR SINE MIR 12 105 -157 455 249 29 35 chr9 17329996 17330169 -100532458 + Charlie8 DNA MER1_type 106 277 -2140 322 205 133 12 chr9 17330258 17330341 -100532286 + MER5A DNA MER1_type 4 96 -93 1134 145 65 0 chr9 17330421 17330607 -100532020 + MER58A DNA MER1_type 27 224 0 427 336 103 11 chr9 17331717 17331979 -100530648 - L3b LINE CR1 -194 1389 1104 356 304 114 6 chr9 17332225 17332383 -100530244 - MIR SINE MIR 0 262 88 413 200 38 0 chr9 17332495 17332575 -100530052 + L2 LINE L2 3190 3272 0 2662 102 3 3 chr9 17332674 17333035 -100529592 + THE1B LTR MaLR 1 361 -3 385 266 22 44 chr9 17333055 17333212 -100529415 + MER5A DNA MER1_type 7 168 -18 1046 233 67 75 chr9 17333215 17333705 -100528922 + LTR33 LTR ERVL 32 517 -4 236 296 217 0 chr9 17335057 17335209 -100527418 - MIR SINE MIR -69 193 9 1463 294 94 6 chr9 17335466 17335977 -100526650 - MLT1L LTR MaLR -57 558 3 322 282 23 30 chr9 17336201 17336332 -100526295 - L1ME LINE L1 -352 5769 5640 303 279 197 33 chr9 17336344 17336588 -100526039 - L1ME LINE L1 -588 5582 5299 676 207 132 24 chr9 17337228 17337437 -100525190 + MIR SINE MIR 33 261 -1 210 354 186 0 chr9 17337446 17337559 -100525068 - L2 LINE L2 -2 3270 3137 193 389 21 7 chr9 17337924 17338068 -100524559 - L2 LINE L2 -659 2655 2510 664 251 78 33 chr9 17339353 17339596 -100523031 - L2 LINE L2 0 3313 3060 1081 234 28 16 chr9 17339596 17339848 -100522779 - MLT1E1 LTR MaLR 0 654 400 439 245 69 24 chr9 17339891 17340083 -100522544 - MLT1E1 LTR MaLR -402 252 1 593 314 136 9 chr9 17340086 17340565 -100522062 - L2 LINE L2 -252 3061 2516 940 263 24 24 chr9 17340583 17340830 -100521797 + MIR SINE MIR 12 258 -4 208 302 160 47 chr9 17340862 17340968 -100521659 - L2 LINE L2 -805 2509 2392 1815 169 25 19 chr9 17341200 17341562 -100521065 + MLT1A1 LTR MaLR 2 365 0 14559 200 40 9 chr9 17342170 17348500 -100514127 + L1PB1 LINE L1 6 6864 -3 26 0 0 0 chr9 17348500 17348526 -100514101 + AT_rich Low_complexity Low_complexity 1 26 0 352 337 20 65 chr9 17348543 17348742 -100513885 + L2 LINE L2 3027 3216 -56 1055 194 38 0 chr9 17348745 17348931 -100513696 - MLT1A1 LTR MaLR 0 365 173 340 286 99 31 chr9 17349022 17349183 -100513444 + HERV16 LTR ERVL 137 308 -4688 4068 177 91 29 chr9 17349345 17350216 -100512411 + MER45B DNA AcHobo 116 1040 0 221 296 179 34 chr9 17350341 17350520 -100512107 + MIR SINE MIR 58 262 0 4595 113 2 2 chr9 17350778 17351413 -100511214 + MER41B LTR ERV1 1 635 0 343 61 0 0 chr9 17354139 17354188 -100508439 + Alu SINE Alu 252 300 -1 2225 96 3 0 chr9 17354336 17354639 -100507988 - AluSx SINE Alu -8 304 1 490 282 77 28 chr9 17357125 17357306 -100505321 + MIR SINE MIR 73 262 0 2264 219 98 25 chr9 17357646 17358222 -100504405 - L1ME2 LINE L1 -9 6155 5530 216 0 0 0 chr9 17358222 17358246 -100504381 + (CA)n Simple_repeat Simple_repeat 1 24 0 2264 219 98 25 chr9 17358246 17358281 -100504346 - L1ME2 LINE L1 -634 5530 5499 862 129 18 61 chr9 17358332 17358495 -100504132 - MER97b DNA MER1_type? -874 179 24 714 258 63 0 chr9 17358521 17358761 -100503866 - L1ME2 LINE L1 -704 5470 5216 398 254 9 18 chr9 17359524 17359638 -100502989 + MIR SINE MIR 148 260 -2 364 49 16 0 chr9 17359979 17360040 -100502587 - L1MA7 LINE L1 -1 6290 6229 317 177 16 16 chr9 17360380 17360442 -100502185 + MIR SINE MIR 34 95 -113 996 113 28 0 chr9 17360971 17361113 -100501514 + AluSg/x SINE Alu 160 305 -7 228 67 0 0 chr9 17361644 17361674 -100500953 + (TG)n Simple_repeat Simple_repeat 2 31 0 262 348 29 22 chr9 17364011 17364149 -100498478 - MIR3 SINE MIR -66 142 4 489 276 33 20 chr9 17364315 17364467 -100498160 + MIR SINE MIR 95 248 -14 358 282 0 9 chr9 17364796 17364906 -100497721 - MIR SINE MIR -61 147 74 1875 178 27 0 chr9 17365255 17365593 -100497034 + MLT1A1 LTR MaLR 7 353 -12 280 273 0 0 chr9 17367019 17367085 -100495542 + MIR3 SINE MIR 95 160 -48 244 308 0 110 chr9 17367991 17368025 -100494602 + MIR SINE MIR 20 56 -206 2290 96 0 3 chr9 17368025 17368318 -100494309 - AluSc SINE Alu -17 292 1 244 308 0 110 chr9 17368318 17368429 -100494198 + MIR SINE MIR 56 149 -113 320 267 56 0 chr9 17470393 17470483 -100392144 - MIR SINE MIR -81 181 87 1299 127 75 0 chr9 17470973 17471186 -100391441 + MER30 DNA MER1_type 2 230 0 562 208 8 0 chr9 17471880 17472005 -100390622 - L1M4 LINE L1 -883 5263 5138 2262 130 8 24 chr9 17472467 17472837 -100389790 - THE1B LTR MaLR 0 364 1 1463 187 16 13 chr9 17472837 17473147 -100389480 - L1M4 LINE L1 -998 5148 4838 205 230 40 0 chr9 17473299 17473373 -100389254 + (CCCCG)n Simple_repeat Simple_repeat 2 78 0 615 232 53 32 chr9 17473540 17473730 -100388897 - MLT1A1 LTR MaLR -171 194 1 695 200 7 0 chr9 17473730 17473865 -100388762 - MLT1A1-int LTR MaLR 0 1735 1600 185 233 0 0 chr9 17475140 17475200 -100387427 + C-rich Low_complexity Low_complexity 1 60 0 26 0 0 0 chr9 17475200 17475226 -100387401 + GC_rich Low_complexity Low_complexity 1 26 0 403 18 36 0 chr9 17476110 17476166 -100386461 + (TG)n Simple_repeat Simple_repeat 1 58 0 1399 211 80 19 chr9 17477279 17477781 -100384846 - L1MC/D LINE L1 -745 5401 4911 1956 118 14 0 chr9 17478798 17479112 -100383515 + AluSq SINE Alu 1 318 0 282 298 76 57 chr9 17479715 17479793 -100382834 - L1MC/D LINE L1 -2287 5521 5446 2009 135 39 9 chr9 17479793 17480127 -100382500 - MER2 DNA MER2_type 0 344 1 282 298 76 57 chr9 17480127 17480310 -100382317 - L1MC/D LINE L1 -2362 5446 5255 538 327 41 61 chr9 17480467 17480998 -100381629 - L1MC/D LINE L1 -1103 5043 4532 400 353 91 29 chr9 17480998 17481483 -100381144 - HAL1 LINE L1 -1009 1498 984 1839 102 15 19 chr9 17483613 17483879 -100378748 + AluSg SINE Alu 1 265 -45 2564 222 14 0 chr9 17484535 17485106 -100377521 + L1MC3 LINE L1 7205 7783 -2 195 341 146 39 chr9 17485381 17485586 -100377041 + MIR SINE MIR 30 256 -6 243 146 18 18 chr9 17485714 17485769 -100376858 + L1MB7 LINE L1 6130 6184 0 1427 180 0 4 chr9 17486318 17486546 -100376081 + AluJb SINE Alu 3 229 -83 693 203 73 0 chr9 17487046 17487223 -100375404 - L1M4 LINE L1 -396 5788 5599 405 138 0 0 chr9 17487319 17487384 -100375243 - L1MB7 LINE L1 -226 5948 5884 345 222 79 32 chr9 17487385 17487511 -100375116 + L1MB7 LINE L1 5953 6084 -100 288 262 48 48 chr9 17487667 17487854 -100374773 + L1ME4a LINE L1 5934 6120 -1 1351 154 43 1 chr9 17488260 17488582 -100374045 + L1MC/D LINE L1 5158 5491 -744 317 221 0 0 chr9 17489841 17489909 -100372718 - Tigger4(Zombi) DNA MER2_type 0 2731 2664 239 250 0 0 chr9 17489884 17489940 -100372687 - Tigger4(Zombi) DNA MER2_type -2674 57 2 * 1075 224 56 32 chr9 17489941 17490427 -100372200 + MLT1E LTR MaLR 1 593 0 180 245 20 0 chr9 17492694 17492743 -100369884 + L2 LINE L2 2713 2762 -552 213 313 45 89 chr9 17492838 17493196 -100369431 + L2 LINE L2 2882 3223 -90 225 244 0 0 chr9 17493858 17493899 -100368728 + (TG)n Simple_repeat Simple_repeat 2 42 0 446 340 25 15 chr9 17493940 17494143 -100368484 + MIR SINE MIR 58 262 0 281 302 0 0 chr9 17495160 17495246 -100367381 + MER3 DNA MER1_type 37 122 -87 1684 231 62 38 chr9 17495528 17496394 -100366233 - L1ME1 LINE L1 -289 5877 4985 2359 164 19 19 chr9 17496398 17496824 -100365803 - MSTB LTR MaLR 0 426 1 2975 249 42 50 chr9 17496843 17499019 -100363608 - L1 LINE L1 -3202 4363 2203 395 206 0 15 chr9 17499028 17499096 -100363531 + MER8 DNA MER2_type 1 67 -172 270 95 0 0 chr9 17499487 17499529 -100363098 + (CA)n Simple_repeat Simple_repeat 1 42 0 1484 201 6 29 chr9 17503515 17503533 -100359094 - AluJo SINE Alu -6 306 289 234 0 0 0 chr9 17503533 17503559 -100359068 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1484 201 6 29 chr9 17503559 17503853 -100358774 - AluJo SINE Alu -23 289 1 2228 102 0 3 chr9 17504554 17504847 -100357780 - AluSc SINE Alu -17 292 1 254 263 82 67 chr9 17505079 17505273 -100357354 + L1MC4a LINE L1 7219 7415 -393 * 267 268 92 49 chr9 17505259 17505833 -100356794 + L1MC4 LINE L1 7313 8042 0 234 91 0 0 chr9 17506557 17506590 -100356037 + (T)n Simple_repeat Simple_repeat 1 33 0 286 300 42 8 chr9 17507768 17507888 -100354739 - MIR SINE MIR -15 247 124 2270 36 43 4 chr9 17507951 17508253 -100354374 + AluY SINE Alu 1 313 0 618 296 64 15 chr9 17508266 17508469 -100354158 - MIR SINE MIR -48 214 2 564 330 28 14 chr9 17509128 17509346 -100353281 + MIR SINE MIR 5 225 -37 2167 124 38 27 chr9 17511583 17511954 -100350673 + THE1C LTR MaLR 1 375 0 205 274 189 11 chr9 17512972 17513067 -100349560 - MIR SINE MIR -131 131 20 2239 128 0 0 chr9 17513199 17513511 -100349116 + AluSx SINE Alu 1 312 0 384 118 0 44 chr9 17514309 17514377 -100348250 + AluS SINE Alu 1 65 -238 248 202 169 34 chr9 17515098 17515187 -100347440 + MIR SINE MIR 99 199 -63 833 190 11 0 chr9 17515306 17515485 -100347142 - L1MA7 LINE L1 -10 6281 6101 11521 117 31 68 chr9 17515486 17516060 -100346567 - Tigger1 DNA MER2_type -3 2415 1821 1972 159 0 28 chr9 17516060 17516381 -100346246 + AluSx SINE Alu 1 312 0 11521 117 31 68 chr9 17516381 17517908 -100344719 - Tigger1 DNA MER2_type -597 1821 392 7287 201 38 4 chr9 17518213 17519880 -100342747 + L1 LINE L1 3217 4939 -1207 336 48 0 0 chr9 17520691 17520733 -100341894 + (TG)n Simple_repeat Simple_repeat 1 42 0 288 308 103 0 chr9 17520742 17520849 -100341778 + MER117 DNA MER1_type 53 170 -27 538 259 58 58 chr9 17521668 17521977 -100340650 - L1M4 LINE L1 -1605 4541 4233 280 261 0 0 chr9 17521970 17522035 -100340592 - L1M4 LINE L1 -3112 3034 2970 * 1893 164 0 26 chr9 17522035 17522231 -100340396 - AluJo SINE Alu -10 302 115 3934 68 12 124 chr9 17522231 17522918 -100339709 - LTR66 LTR ERVL 0 610 1 1893 164 0 26 chr9 17522918 17523031 -100339596 - AluJo SINE Alu -197 115 1 295 155 179 0 chr9 17523032 17523116 -100339511 - L1M4 LINE L1 -3169 2977 2879 1960 195 112 6 chr9 17523116 17523582 -100339045 - L1PA16 LINE L1 -1 6165 5651 1725 222 76 28 chr9 17523565 17523777 -100338850 - L1M4 LINE L1 -3238 2908 2708 * 2250 103 3 0 chr9 17523777 17524078 -100338549 + AluSp SINE Alu 1 302 -11 1725 222 76 28 chr9 17524078 17524482 -100338145 - L1M4 LINE L1 -3438 2708 2262 1663 199 0 10 chr9 17524486 17524793 -100337834 + AluJb SINE Alu 3 306 -6 2472 73 0 19 chr9 17524793 17525109 -100337518 + AluY SINE Alu 1 310 -1 2213 109 6 6 chr9 17525124 17525437 -100337190 + AluSp SINE Alu 1 313 0 296 318 12 0 chr9 17525728 17525813 -100336814 - MIR SINE MIR -176 86 1 905 267 81 40 chr9 17525848 17526369 -100336258 - L1ME4a LINE L1 -69 6121 5580 403 262 93 52 chr9 17526422 17526594 -100336033 - MIR SINE MIR 0 262 84 23 54 0 0 chr9 17526756 17526793 -100335834 + AT_rich Low_complexity Low_complexity 1 37 0 816 216 50 37 chr9 17527000 17527218 -100335409 - L1MB8 LINE L1 -5 6173 5953 318 259 80 45 chr9 17528156 17528268 -100334359 - MLT1I LTR MaLR -2 407 292 189 107 0 0 chr9 17529286 17529314 -100333313 + (T)n Simple_repeat Simple_repeat 1 28 0 569 256 95 18 chr9 17529461 17529629 -100332998 + MIR SINE MIR 1 181 -81 223 280 147 21 chr9 17529633 17529776 -100332851 - L2 LINE L2 -176 3137 2977 264 184 233 68 chr9 17529859 17529962 -100332665 - MIR SINE MIR -50 212 93 449 282 60 6 chr9 17531150 17531624 -100331003 - L1ME4a LINE L1 -743 5488 4987 350 281 81 68 chr9 17531838 17531981 -100330646 - L1ME4a LINE L1 -1501 4714 4574 1862 140 41 0 chr9 17531981 17532295 -100330332 - AluSx SINE Alu 0 325 1 350 281 81 68 chr9 17532295 17532666 -100329961 - L1ME4a LINE L1 -1641 4574 4192 562 285 79 70 chr9 17532793 17533300 -100329327 - L1MEc LINE L1 -3546 2669 2198 1792 180 0 0 chr9 17533418 17533712 -100328915 - AluJb SINE Alu -18 294 1 427 302 54 15 chr9 17533928 17534133 -100328494 - L1MEc LINE L1 -4865 1340 1128 378 226 163 0 chr9 17534175 17534365 -100328262 - L1MDa LINE L1 -3106 3023 2803 328 287 56 46 chr9 17534385 17534883 -100327744 - L1MDa LINE L1 -3461 2668 2166 21 0 0 0 chr9 17534994 17535015 -100327612 + AT_rich Low_complexity Low_complexity 1 21 0 205 205 0 0 chr9 17535280 17535319 -100327308 + T-rich Low_complexity Low_complexity 1 39 0 305 328 75 11 chr9 17535419 17535687 -100326940 - L1MDa LINE L1 -4602 1527 1243 608 277 107 64 chr9 17535711 17535791 -100326836 - L1MDa LINE L1 -4886 1233 1158 1118 211 0 4 chr9 17535791 17536028 -100326599 + MER46A DNA MER2_type 1 236 0 608 277 107 64 chr9 17536028 17536603 -100326024 - L1MDa LINE L1 -4961 1158 550 1482 236 16 0 chr9 17536779 17537148 -100325479 - L1M4 LINE L1 -923 5223 4849 252 297 58 58 chr9 17537215 17537353 -100325274 + MIR SINE MIR 29 166 -96 462 344 8 0 chr9 17537370 17537501 -100325126 + MIR SINE MIR 1 132 -130 339 158 118 13 chr9 17537858 17537934 -100324693 - L1MB7 LINE L1 -40 6144 6061 8087 34 0 0 chr9 17537938 17539682 -100322945 - L1PA3 LINE L1 -2 6153 4411 2757 20 0 0 chr9 17539682 17539986 -100322641 - AluYa5 SINE Alu -7 304 1 17469 45 58 3 chr9 17539986 17542225 -100320402 - L1PA3 LINE L1 -3783 2363 1 808 264 146 65 chr9 17542355 17542828 -100319799 + MLT1J LTR MaLR 1 511 0 454 302 98 51 chr9 17543533 17543768 -100318859 + MIR SINE MIR 17 262 0 603 268 55 11 chr9 17544137 17544320 -100318307 - MIR SINE MIR -36 226 36 231 284 68 14 chr9 17544507 17544581 -100318046 + MIR SINE MIR 107 184 -78 23 33 0 0 chr9 17545810 17545840 -100316787 + AT_rich Low_complexity Low_complexity 1 30 0 203 115 131 0 chr9 17545853 17545914 -100316713 + (TTAA)n Simple_repeat Simple_repeat 4 72 0 294 119 37 30 chr9 17545985 17546119 -100316508 + (TA)n Simple_repeat Simple_repeat 2 136 0 511 236 57 0 chr9 17546210 17546333 -100316294 - LTR37A LTR ERV1 -251 175 46 360 286 127 24 chr9 17546407 17546620 -100316007 - L2 LINE L2 -15 3298 3064 197 347 14 0 chr9 17547812 17547884 -100314743 - L2 LINE L2 -344 2969 2897 1916 108 20 14 chr9 17549331 17549626 -100313001 - AluSx SINE Alu -15 297 1 21 36 0 0 chr9 17549811 17549839 -100312788 + AT_rich Low_complexity Low_complexity 1 28 0 4155 241 75 17 chr9 17549926 17551334 -100311293 + Zaphod DNA AcHobo 2532 4021 -10 773 245 130 12 chr9 17551721 17551974 -100310653 + MLT1H1 LTR MaLR 273 555 0 320 298 40 32 chr9 17552636 17552760 -100309867 + L2 LINE L2 3147 3271 -1 394 321 164 13 chr9 17552787 17552946 -100309681 - MIR3 SINE MIR -11 197 15 531 327 98 31 chr9 17553021 17553348 -100309279 + L3 LINE CR1 913 1261 -316 210 304 194 36 chr9 17553375 17553767 -100308860 + L2 LINE L2 1790 2243 -1071 468 314 46 31 chr9 17553977 17554171 -100308456 + MIR SINE MIR 32 228 -34 228 293 50 20 chr9 17554664 17554763 -100307864 + L3 LINE CR1 1370 1471 -106 199 248 19 0 chr9 17554760 17554814 -100307813 + L3 LINE CR1 1519 1570 -7 * 927 347 111 34 chr9 17555222 17556496 -100306131 + L2 LINE L2 1356 2727 -587 383 216 23 0 chr9 17556589 17556677 -100305950 - MER5A DNA MER1_type -83 106 17 265 347 21 26 chr9 17556741 17556931 -100305696 + L2 LINE L2 2782 2970 -344 26 30 0 0 chr9 17557576 17557609 -100305018 + AT_rich Low_complexity Low_complexity 1 33 0 401 281 44 37 chr9 17558100 17558235 -100304392 - L2 LINE L2 0 3313 3178 236 354 157 11 chr9 17558901 17559079 -100303548 - MIR SINE MIR -12 250 47 812 182 77 6 chr9 17559535 17559705 -100302922 - L1MC3 LINE L1 -1699 6086 5905 774 220 83 49 chr9 17560551 17560815 -100301812 - ORSL DNA AcHobo -2 273 1 1695 179 4 0 chr9 17562269 17562537 -100300090 - AluJo SINE Alu -32 280 12 714 346 88 26 chr9 17562992 17563492 -100299135 + L3 LINE CR1 1046 1576 -1 2179 118 0 3 chr9 17563528 17563825 -100298802 - AluSq SINE Alu -17 296 1 212 367 75 37 chr9 17563825 17564013 -100298614 - L2 LINE L2 -8 3264 3070 280 336 77 34 chr9 17564150 17564358 -100298269 - L2 LINE L2 -222 3050 2834 25 0 0 0 chr9 17564562 17564587 -100298040 + AT_rich Low_complexity Low_complexity 1 25 0 3280 255 139 23 chr9 17564994 17566419 -100296208 + L2 LINE L2 1723 3311 -2 22 0 0 0 chr9 17566701 17566723 -100295904 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 17567059 17567080 -100295547 + AT_rich Low_complexity Low_complexity 1 21 0 356 345 28 14 chr9 17567311 17567453 -100295174 - L2 LINE L2 -4 3268 3125 484 289 147 45 chr9 17567738 17568091 -100294536 - L2 LINE L2 -561 2753 2365 180 200 0 0 chr9 17568272 17568322 -100294305 + (CAGG)n Simple_repeat Simple_repeat 1 50 0 210 191 0 0 chr9 17568327 17568374 -100294253 + A-rich Low_complexity Low_complexity 1 47 0 241 386 53 0 chr9 17568600 17568714 -100293913 + MIR3 SINE MIR 83 202 -6 628 190 9 134 chr9 17568734 17568803 -100293824 - MLT2B1 LTR ERVL 0 520 444 489 84 0 0 chr9 17568803 17568874 -100293753 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 628 190 9 134 chr9 17568874 17569020 -100293607 - MLT2B1 LTR ERVL -76 444 332 483 144 33 0 chr9 17569017 17569107 -100293520 - MLT2B1 LTR ERVL -424 96 4 * 2409 81 0 0 chr9 17570451 17570760 -100291867 - AluY SINE Alu 0 311 3 336 267 67 0 chr9 17571073 17571148 -100291479 - L2 LINE L2 0 3313 3234 456 19 0 0 chr9 17571379 17571432 -100291195 + (TC)n Simple_repeat Simple_repeat 1 53 0 288 0 0 0 chr9 17571431 17571463 -100291164 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 1914 163 38 36 chr9 17572098 17572654 -100289973 + MLT2A2 LTR ERVL 1 554 0 1407 132 0 4 chr9 17572769 17572997 -100289630 - L1PA16 LINE L1 -332 5834 5608 250 368 70 0 chr9 17574075 17574189 -100288438 + MER91A DNA MER1_type 40 161 -35 200 242 61 15 chr9 17574190 17574256 -100288371 + MER91A DNA MER1_type 128 196 0 216 284 27 0 chr9 17574590 17574664 -100287963 + CT-rich Low_complexity Low_complexity 1 76 0 234 0 0 0 chr9 17574862 17574888 -100287739 + (T)n Simple_repeat Simple_repeat 1 26 0 312 312 29 65 chr9 17575621 17575759 -100286868 - MIR3 SINE MIR -12 196 64 780 292 65 11 chr9 17578123 17578591 -100284036 - L1ME LINE L1 -354 5808 5295 2159 68 10 0 chr9 17578608 17578902 -100283725 - L1PA7 LINE L1 0 6154 5858 3127 67 2 0 chr9 17578903 17579333 -100283294 + L1P LINE L1 4840 5270 -876 233 263 54 73 chr9 17579331 17579536 -100283091 - L1ME LINE L1 -863 5283 5083 * 275 272 39 0 chr9 17579680 17579783 -100282844 - L1ME LINE L1 -1302 4844 4738 350 267 38 8 chr9 17579821 17579952 -100282675 - L1ME LINE L1 -1553 4593 4459 7687 34 7 12 chr9 17581070 17582776 -100279851 + L1PA4 LINE L1 4454 6155 0 327 279 127 19 chr9 17586505 17586663 -100275964 - MIR SINE MIR -13 249 75 23 0 0 0 chr9 17587238 17587261 -100275366 + AT_rich Low_complexity Low_complexity 1 23 0 220 274 0 16 chr9 17591153 17591215 -100271412 + CT-rich Low_complexity Low_complexity 1 61 0 369 240 96 0 chr9 17592705 17592809 -100269818 + MIR SINE MIR 149 262 0 354 239 179 16 chr9 17593029 17593213 -100269414 - MIR SINE MIR -29 233 20 749 275 94 43 chr9 17594346 17594803 -100267824 + L2 LINE L2 2776 3237 -76 4796 25 0 0 chr9 17594866 17595454 -100267173 - L1PA3 LINE L1 -1499 4647 4060 7851 17 0 0 chr9 17595456 17596954 -100265673 + L1PA3 LINE L1 4658 6155 0 24 53 0 0 chr9 17597032 17597070 -100265557 + AT_rich Low_complexity Low_complexity 1 38 0 772 182 0 15 chr9 17597833 17597965 -100264662 + FLAM_C SINE Alu 1 130 -3 21 57 0 0 chr9 17598415 17598450 -100264177 + AT_rich Low_complexity Low_complexity 1 35 0 1175 159 224 4 chr9 17599217 17599449 -100263178 - AluJb SINE Alu -29 283 1 335 369 35 0 chr9 17600146 17600287 -100262340 - MIR3 SINE MIR -23 185 40 224 244 0 0 chr9 17600554 17600599 -100262028 + L3 LINE CR1 1526 1570 -7 195 250 204 68 chr9 17602603 17602735 -100259892 + MIR3 SINE MIR 16 165 -43 607 136 27 0 chr9 17603179 17603289 -100259338 - L1MB4 LINE L1 -66 6114 6002 189 263 88 0 chr9 17604219 17604299 -100258328 - MIR SINE MIR 0 262 176 203 324 0 81 chr9 17604342 17604453 -100258174 - MER5B DNA MER1_type -1 177 76 673 180 25 8 chr9 17606353 17606475 -100256152 + FLAM_A SINE Alu 1 124 -9 263 266 9 35 chr9 17606490 17606603 -100256024 + (TA)n Simple_repeat Simple_repeat 1 110 0 503 312 65 39 chr9 17606686 17606928 -100255699 - MIR SINE MIR -11 251 9 489 283 22 60 chr9 17606994 17607178 -100255449 - MER5B DNA MER1_type -1 177 1 250 343 63 74 chr9 17607257 17607997 -100254630 - L2 LINE L2 -55 3217 2415 494 239 30 60 chr9 17608891 17609058 -100253569 + MIR SINE MIR 50 211 -51 374 333 85 12 chr9 17609797 17609962 -100252665 + MIR3 SINE MIR 31 207 -1 256 348 169 20 chr9 17610887 17611088 -100251539 - L2 LINE L2 0 3272 3042 2721 161 51 13 chr9 17611113 17611646 -100250981 - MER68 LTR ERV1 -9 553 1 283 227 125 11 chr9 17611924 17612012 -100250615 - L2 LINE L2 -20 3252 3155 254 341 77 35 chr9 17612678 17612887 -100249740 + MIR SINE MIR 40 261 -1 279 295 115 0 chr9 17613414 17613536 -100249091 - MIR SINE MIR -125 137 2 398 326 157 7 chr9 17615469 17615616 -100247011 + MIR SINE MIR 13 181 -81 2633 43 0 3 chr9 17615761 17616065 -100246562 - AluY SINE Alu -2 309 7 22 103 0 0 chr9 17618591 17618669 -100243958 + AT_rich Low_complexity Low_complexity 1 78 0 3392 177 97 34 chr9 17618698 17619559 -100243068 + L1MB4 LINE L1 5259 6178 -2 364 132 15 15 chr9 17619577 17619645 -100242982 + L1MB4 LINE L1 6111 6178 -2 571 311 156 37 chr9 17619903 17620665 -100241962 + L2 LINE L2 1455 2307 -1007 1491 146 65 4 chr9 17620686 17620932 -100241695 + AluJb SINE Alu 37 297 -15 216 97 0 0 chr9 17622318 17622349 -100240278 + (T)n Simple_repeat Simple_repeat 1 31 0 792 188 110 35 chr9 17623548 17623803 -100238824 - MER102a DNA MER1_type -23 307 34 213 226 177 0 chr9 17624416 17624478 -100238149 + L2 LINE L2 3182 3254 -18 194 293 132 70 chr9 17624543 17624884 -100237743 + L2 LINE L2 1898 2259 -1055 1277 228 34 48 chr9 17624913 17625268 -100237359 + MLT1B LTR MaLR 1 350 -40 55 40 0 0 chr9 17625628 17625704 -100236923 + AT_rich Low_complexity Low_complexity 1 76 0 700 304 89 40 chr9 17627418 17627790 -100234837 + MLT1J2 LTR MaLR 59 448 -2 7995 26 0 0 chr9 17627851 17628829 -100233798 - L1PA5 LINE L1 -11 6143 5160 3134 61 0 0 chr9 17628829 17629222 -100233405 + L1P LINE L1 4705 5097 -1049 1855 155 0 4 chr9 17629761 17630039 -100232588 - AluSx SINE Alu -35 277 1 21 0 0 0 chr9 17631284 17631305 -100231322 + AT_rich Low_complexity Low_complexity 1 21 0 236 371 86 63 chr9 17731386 17731701 -100130926 + L2 LINE L2 2949 3270 -2 234 0 0 0 chr9 17731963 17731989 -100130638 + (A)n Simple_repeat Simple_repeat 1 26 0 579 164 82 8 chr9 17732700 17732822 -100129805 - L1MC4a LINE L1 -1907 5901 5771 311 199 71 35 chr9 17732894 17733035 -100129592 - L1MC4a LINE L1 -2350 5458 5313 202 185 37 0 chr9 17733146 17733200 -100129427 + T-rich Low_complexity Low_complexity 2 57 0 1831 150 7 0 chr9 17733391 17733665 -100128962 - AluJb SINE Alu -36 276 1 1889 76 35 111 chr9 17734495 17734811 -100127816 - AluSq SINE Alu -21 292 1 2220 82 0 0 chr9 17734951 17735267 -100127360 - AluY SINE Alu 0 316 1 561 291 44 0 chr9 17738624 17738782 -100123845 + MIR SINE MIR 53 217 -45 1951 122 51 0 chr9 17739555 17739873 -100122754 + AluSq SINE Alu 1 333 0 1629 176 29 23 chr9 17740003 17740309 -100122318 - AluJo SINE Alu -4 308 1 38 22 0 0 chr9 17740309 17740354 -100122273 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr9 17741698 17741733 -100120894 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr9 17742713 17742738 -100119889 + AT_rich Low_complexity Low_complexity 1 25 0 192 40 0 0 chr9 17743646 17743671 -100118956 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2470 65 7 0 chr9 17744852 17745159 -100117468 + AluY SINE Alu 1 309 -2 2009 144 20 0 chr9 17745296 17745602 -100117025 - AluSx SINE Alu 0 312 1 237 65 0 0 chr9 17745949 17745980 -100116647 + (TG)n Simple_repeat Simple_repeat 2 32 0 2052 142 0 10 chr9 17746725 17747035 -100115592 + AluJo SINE Alu 1 307 -5 1882 174 0 7 chr9 17747046 17747350 -100115277 + AluJo SINE Alu 2 303 -9 1717 174 20 30 chr9 17749330 17749634 -100112993 + AluJo SINE Alu 1 301 -11 249 376 32 0 chr9 17750355 17750448 -100112179 + L2 LINE L2 3137 3232 -40 2341 110 0 0 chr9 17750729 17751029 -100111598 + AluSg SINE Alu 1 300 -10 1083 115 29 40 chr9 17751031 17751205 -100111422 + AluSg/x SINE Alu 134 305 -5 1963 115 4 11 chr9 17751402 17751681 -100110946 + AluSq SINE Alu 1 277 -36 218 28 0 56 chr9 17751681 17751717 -100110910 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 263 29 0 0 chr9 17751717 17751751 -100110876 + AluSq/x SINE Alu 88 121 -182 508 269 108 21 chr9 17752859 17753045 -100109582 - MIR SINE MIR -56 206 5 990 186 0 0 chr9 17753135 17753307 -100109320 - FAM SINE Alu -3 172 1 209 280 67 13 chr9 17753848 17753923 -100108704 - MIR SINE MIR -62 146 68 1473 199 59 4 chr9 17755645 17755916 -100106711 - AluJo SINE Alu -15 297 12 914 275 14 0 chr9 17756838 17757045 -100105582 - MIR SINE MIR -46 216 7 2231 132 0 3 chr9 17758177 17758487 -100104140 + AluSx SINE Alu 1 309 -3 27 0 0 0 chr9 17758615 17758642 -100103985 + AT_rich Low_complexity Low_complexity 1 27 0 520 286 82 48 chr9 17758669 17758900 -100103727 + MIR SINE MIR 23 261 -1 206 313 0 0 chr9 17759181 17759229 -100103398 - MIR SINE MIR -129 79 32 2257 122 14 11 chr9 17759336 17759704 -100102923 - L1PB1 LINE L1 -1 6150 5782 245 52 36 119 chr9 17759753 17759947 -100102680 + (TA)n Simple_repeat Simple_repeat 2 179 0 694 110 0 71 chr9 17759962 17759985 -100102642 - L1PB1 LINE L1 -356 5795 5772 375 23 0 0 chr9 17759985 17760029 -100102598 + (CA)n Simple_repeat Simple_repeat 2 45 0 694 110 0 71 chr9 17760029 17760132 -100102495 - L1PB1 LINE L1 -379 5772 5678 468 320 23 27 chr9 17760328 17760547 -100102080 + L2 LINE L2 3092 3309 -4 229 232 27 80 chr9 17760621 17760733 -100101894 + MIR SINE MIR 90 195 -67 22 0 0 0 chr9 17761351 17761373 -100101254 + AT_rich Low_complexity Low_complexity 1 22 0 233 0 62 0 chr9 17761749 17761781 -100100846 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2466 105 0 0 chr9 17761799 17762112 -100100515 + AluSq SINE Alu 1 313 0 454 273 62 31 chr9 17762296 17762457 -100100170 - MER91A DNA MER1_type -2 194 29 183 284 15 30 chr9 17762554 17762621 -100100006 - L3 LINE CR1 -610 967 902 686 286 158 53 chr9 17762844 17763015 -100099612 + L2 LINE L2 2570 2722 -591 1682 65 0 0 chr9 17763015 17763229 -100099398 - L1PA6 LINE L1 0 6154 5941 686 286 158 53 chr9 17763229 17763557 -100099070 + L2 LINE L2 2722 3014 -299 2280 117 0 0 chr9 17763557 17763856 -100098771 + AluSc SINE Alu 1 299 -10 686 286 158 53 chr9 17763856 17764027 -100098600 + L2 LINE L2 3014 3311 -2 319 353 152 31 chr9 17764031 17764445 -100098182 + L2 LINE L2 2808 3271 -1 185 241 103 83 chr9 17766315 17766460 -100096167 + L2 LINE L2 2276 2423 -891 231 291 36 0 chr9 17767360 17767415 -100095212 - L2 LINE L2 -93 3179 3123 2808 59 3 0 chr9 17767526 17767880 -100094747 + THE1A LTR MaLR 1 355 0 522 149 149 0 chr9 17768632 17768739 -100093888 - MER3 DNA MER1_type 0 209 87 626 190 110 17 chr9 17768739 17768976 -100093651 + MER3 DNA MER1_type 2366 2624 0 187 247 79 90 chr9 17770783 17770872 -100091755 + MIR SINE MIR 61 148 -114 1606 171 61 0 chr9 17770937 17771217 -100091410 + AluJo SINE Alu 1 297 -15 1108 179 66 14 chr9 17772112 17772324 -100090303 - AluJo SINE Alu -5 307 85 333 62 0 0 chr9 17772814 17772862 -100089765 + (TG)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr9 17775613 17775636 -100086991 + AT_rich Low_complexity Low_complexity 1 23 0 405 272 69 52 chr9 17775918 17776091 -100086536 - MIR SINE MIR -5 257 82 1330 118 68 0 chr9 17776327 17776547 -100086080 - LTR12 LTR ERV1 0 714 480 292 224 31 20 chr9 17776548 17776646 -100085981 - LTR30 LTR ERV1 -80 642 544 4079 143 38 57 chr9 17776646 17777621 -100085006 - pTR5 LTR ERV1 -413 2025 741 497 236 93 125 chr9 17777724 17777940 -100084687 + MIR SINE MIR 38 246 -16 265 275 46 9 chr9 17778345 17778454 -100084173 + L1MC4 LINE L1 7929 8041 -1 2318 107 7 0 chr9 17778666 17778976 -100083651 - AluSx SINE Alu 0 312 1 675 311 122 12 chr9 17779544 17779888 -100082739 + L3 LINE CR1 1055 1436 -141 664 211 0 14 chr9 17780674 17780816 -100081811 - FRAM SINE Alu -17 159 20 432 294 91 91 chr9 17781210 17781519 -100081108 - L2 LINE L2 0 3272 2964 2338 104 7 0 chr9 17784046 17784353 -100078274 - AluSx SINE Alu -3 309 1 196 329 71 0 chr9 17784402 17784472 -100078155 - MIR SINE MIR -81 127 53 25 0 0 0 chr9 17784472 17784497 -100078130 + AT_rich Low_complexity Low_complexity 1 25 0 2702 87 0 3 chr9 17785817 17786173 -100076454 - THE1A LTR MaLR 0 355 1 11277 99 8 13 chr9 17786173 17786354 -100076273 - THE1A-int LTR MaLR 0 1580 1399 2379 97 0 0 chr9 17786354 17786653 -100075974 + AluSg SINE Alu 1 299 -11 11277 99 8 13 chr9 17786653 17787649 -100074978 - THE1A-int LTR MaLR -181 1399 412 2501 85 0 0 chr9 17787649 17787956 -100074671 + AluY SINE Alu 1 307 -4 11277 99 8 13 chr9 17787956 17788366 -100074261 - THE1A-int LTR MaLR -1168 412 1 2537 104 3 3 chr9 17788366 17788721 -100073906 - THE1A LTR MaLR 0 355 1 471 287 84 84 chr9 17789078 17789257 -100073370 + MIR SINE MIR 12 193 -69 2362 93 10 0 chr9 17789257 17789559 -100073068 + AluSc SINE Alu 3 307 -2 471 287 84 84 chr9 17789559 17789630 -100072997 + MIR SINE MIR 192 262 0 1066 149 11 6 chr9 17789741 17789915 -100072712 + AluJb SINE Alu 137 311 -1 6244 13 0 5 chr9 17790101 17790860 -100071767 - L1HS LINE L1 -1 6154 5400 1740 89 0 0 chr9 17790960 17791173 -100071454 - AluSg SINE Alu -97 213 1 296 26 0 0 chr9 17791378 17791417 -100071210 - L1P LINE L1 -1979 4167 4129 2024 144 7 0 chr9 17791783 17792082 -100070545 - AluSx SINE Alu -11 301 1 184 349 15 83 chr9 17792165 17792297 -100070330 - L2 LINE L2 -535 2779 2657 693 119 10 0 chr9 17792489 17792590 -100070037 + AluSq SINE Alu 110 211 -102 23 33 0 0 chr9 17792652 17792682 -100069945 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr9 17792834 17792870 -100069757 + AT_rich Low_complexity Low_complexity 1 36 0 1998 159 7 0 chr9 17793115 17793417 -100069210 - AluSx SINE Alu -3 309 6 307 162 0 4 chr9 17793417 17793477 -100069150 - Alu SINE Alu -259 44 1 2776 13 0 0 chr9 17793640 17793944 -100068683 + AluYa5 SINE Alu 1 304 -7 294 327 95 38 chr9 17796352 17796563 -100066064 - MIR SINE MIR -6 256 34 1953 150 7 0 chr9 17796587 17796895 -100065732 - AluSx SINE Alu 0 310 1 279 262 0 48 chr9 17798405 17798489 -100064138 + MIR SINE MIR 183 262 0 2586 181 52 17 chr9 17799364 17799907 -100062720 + MER68 LTR ERV1 1 562 0 1002 85 0 0 chr9 17800685 17800815 -100061812 - Alu SINE Alu -10 300 171 2286 107 0 3 chr9 17801429 17801727 -100060900 - AluSq SINE Alu -16 297 1 1942 116 11 21 chr9 17802643 17802928 -100059699 + AluJo SINE Alu 12 293 -19 23 33 0 0 chr9 17804472 17804502 -100058125 + AT_rich Low_complexity Low_complexity 1 30 0 277 154 0 0 chr9 17805351 17805403 -100057224 - MER53 DNA DNA -137 52 1 2377 87 0 0 chr9 17805496 17805794 -100056833 + AluSc SINE Alu 1 298 -11 643 289 125 0 chr9 17807275 17807507 -100055120 + MIR SINE MIR 2 262 0 259 278 230 0 chr9 17807565 17807691 -100054936 + MIR SINE MIR 3 157 -105 631 167 151 23 chr9 17808999 17809276 -100053351 + MER33 DNA MER1_type 1 310 -14 1837 174 23 0 chr9 17809279 17809584 -100053043 - AluJb SINE Alu 0 312 1 1908 163 13 0 chr9 17816694 17817000 -100045627 - AluJb SINE Alu -1 311 2 260 411 0 0 chr9 17817014 17817104 -100045523 + L2 LINE L2 3134 3223 -49 378 168 147 89 chr9 17817602 17817793 -100044834 + L1ME4a LINE L1 5854 6055 -66 297 253 121 0 chr9 17818288 17818371 -100044256 - MIR SINE MIR -154 108 16 29 47 0 0 chr9 17818536 17818579 -100044048 + AT_rich Low_complexity Low_complexity 1 43 0 2892 223 155 104 chr9 17818598 17819059 -100043568 - Charlie2a DNA MER1_type -537 2325 1889 814 164 15 0 chr9 17819059 17819193 -100043434 - AluSq/x SINE Alu -176 136 1 2892 223 155 104 chr9 17819193 17820502 -100042125 - Charlie2a DNA MER1_type -973 1889 290 2126 130 0 7 chr9 17820502 17820809 -100041818 - AluJb SINE Alu -7 305 1 2892 223 155 104 chr9 17820809 17821115 -100041512 - Charlie2a DNA MER1_type -2572 290 1 2053 130 3 3 chr9 17821273 17821574 -100041053 - AluSq SINE Alu -12 301 1 1229 219 3 56 chr9 17821775 17822095 -100040532 - AluJo SINE Alu -4 308 6 306 127 0 0 chr9 17822102 17822165 -100040462 + Charlie2a DNA MER1_type 960 1022 -1840 944 150 61 11 chr9 17822301 17822481 -100040146 + MER5A DNA MER1_type 1 189 0 247 354 24 6 chr9 17822751 17822915 -100039712 - L2 LINE L2 -1303 2011 1845 308 253 75 42 chr9 17823009 17823129 -100039498 + MIR SINE MIR 76 198 -64 1155 55 88 22 chr9 17823139 17823321 -100039306 + MER30 DNA MER1_type 1 194 -36 2325 93 0 17 chr9 17823578 17823880 -100038747 - AluSg SINE Alu -12 298 2 225 303 0 34 chr9 17824033 17824122 -100038505 - MLT1K LTR MaLR -69 519 434 328 348 26 30 chr9 17824224 17824384 -100038243 - MLT1K LTR MaLR -307 281 121 1662 156 57 27 chr9 17824384 17824685 -100037942 + AluJb SINE Alu 3 312 0 328 348 26 30 chr9 17824685 17824791 -100037836 - MLT1K LTR MaLR -467 121 16 2074 135 0 10 chr9 17825009 17825313 -100037314 - AluSx SINE Alu -11 301 1 2373 99 0 0 chr9 17825748 17826042 -100036585 - AluSc SINE Alu -15 294 1 716 204 15 68 chr9 17826186 17826221 -100036406 + MER58A DNA MER1_type 30 65 -2355 1661 172 38 7 chr9 17826221 17826512 -100036115 - AluJb SINE Alu -12 300 1 716 204 15 68 chr9 17826512 17826682 -100035945 + MER58A DNA MER1_type 65 224 0 1848 156 10 10 chr9 17826708 17827015 -100035612 - AluJb SINE Alu -5 307 1 2348 65 3 16 chr9 17827207 17827513 -100035114 + AluY SINE Alu 1 302 -9 1523 67 95 0 chr9 17832162 17832372 -100030255 + MER30 DNA MER1_type 1 230 0 34 0 0 0 chr9 17832506 17832540 -100030087 + AT_rich Low_complexity Low_complexity 1 34 0 2198 133 3 0 chr9 17833824 17834133 -100028494 + AluSx SINE Alu 1 310 -2 262 348 62 29 chr9 17834698 17834908 -100027719 + L2 LINE L2 2841 3057 -256 247 272 58 58 chr9 17835505 17835608 -100027019 + L2 LINE L2 3154 3256 -16 538 311 85 14 chr9 17836982 17837194 -100025433 + MIR SINE MIR 34 260 -2 234 273 0 0 chr9 17837373 17837428 -100025199 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 224 361 69 15 chr9 17837441 17837571 -100025056 + MIR SINE MIR 3 139 -123 2043 135 30 3 chr9 17837696 17837993 -100024634 - AluSx SINE Alu -7 305 1 223 313 16 0 chr9 17840105 17840169 -100022458 + CT-rich Low_complexity Low_complexity 1 65 0 207 0 0 0 chr9 17842349 17842372 -100020255 + (A)n Simple_repeat Simple_repeat 1 23 0 1174 76 6 6 chr9 17842645 17842817 -100019810 + (TTTCC)n Simple_repeat Simple_repeat 4 175 0 858 156 6 11 chr9 17842823 17843003 -100019624 + CT-rich Low_complexity Low_complexity 2 180 0 1495 174 0 52 chr9 17843010 17843298 -100019329 - AluJb SINE Alu -39 273 1 196 268 54 18 chr9 17843498 17843554 -100019073 - L2 LINE L2 -71 3201 3144 258 256 48 77 chr9 17846595 17846763 -100015864 - MLT1H LTR MaLR -264 285 123 1564 175 18 94 chr9 17849580 17850014 -100012613 + MER63 DNA MER1_type 660 1060 0 22 35 0 0 chr9 17850682 17850711 -100011916 + AT_rich Low_complexity Low_complexity 1 29 0 1833 139 48 20 chr9 17852389 17852684 -100009943 + AluSx SINE Alu 1 303 -9 31 0 0 0 chr9 17852847 17852878 -100009749 + AT_rich Low_complexity Low_complexity 1 31 0 716 213 92 42 chr9 17853266 17853681 -100008946 + MLT1C LTR MaLR 21 467 0 535 268 62 18 chr9 17853689 17853913 -100008714 - L1MC4a LINE L1 -1959 5849 5616 711 193 48 30 chr9 17854259 17854425 -100008202 - AluSg/x SINE Alu -8 304 136 353 329 91 18 chr9 17854756 17854975 -100007652 + MIR SINE MIR 28 262 0 236 228 53 0 chr9 17854993 17855050 -100007577 - MIR SINE MIR -91 171 112 1930 111 55 0 chr9 17855381 17855652 -100006975 + AluSx SINE Alu 2 287 -25 185 278 0 19 chr9 17855719 17855773 -100006854 - L2 LINE L2 0 3272 3220 409 304 65 30 chr9 17856035 17856203 -100006424 + MIR3 SINE MIR 19 192 -16 305 273 124 50 chr9 17856454 17856696 -100005931 - L2 LINE L2 -353 2961 2702 21 0 0 0 chr9 17857789 17857810 -100004817 + AT_rich Low_complexity Low_complexity 1 21 0 362 156 26 0 chr9 17861772 17861849 -100000778 - Charlie7 DNA MER1_type -2 2610 2532 1196 209 110 11 chr9 17862136 17862500 -100000127 - L1ME1 LINE L1 -5 6161 5762 180 0 0 0 chr9 17863032 17863052 -99999575 + (T)n Simple_repeat Simple_repeat 1 20 0 1588 119 0 9 chr9 17863066 17863293 -99999334 - AluSq SINE Alu -88 225 1 1423 188 89 0 chr9 17864802 17865073 -99997554 - AluJo SINE Alu -17 295 1 180 376 20 0 chr9 17865865 17865966 -99996661 + MIR SINE MIR 34 136 -126 1614 231 81 21 chr9 17866511 17866866 -99995761 - L1MC4a LINE L1 -36 7772 7373 2582 108 11 0 chr9 17866866 17867226 -99995401 - THE1B LTR MaLR 0 364 1 1614 231 81 21 chr9 17867226 17867402 -99995225 - L1MC4a LINE L1 -435 7373 7209 28 0 0 0 chr9 17870919 17870947 -99991680 + AT_rich Low_complexity Low_complexity 1 28 0 2071 143 24 21 chr9 17874103 17874439 -99988188 + MER1B DNA MER1_type 1 337 0 977 175 0 18 chr9 17877781 17877947 -99984680 + AluSx SINE Alu 1 163 -149 221 250 0 0 chr9 17879596 17879680 -99982947 + (CATA)n Simple_repeat Simple_repeat 1 84 0 273 98 0 0 chr9 17882719 17882760 -99979867 + (TC)n Simple_repeat Simple_repeat 2 42 0 237 196 0 0 chr9 17883366 17883422 -99979205 + (TA)n Simple_repeat Simple_repeat 1 56 0 243 0 0 0 chr9 17885185 17885212 -99977415 + (TG)n Simple_repeat Simple_repeat 1 27 0 210 71 0 0 chr9 17889322 17889350 -99973277 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 1525 208 69 5 chr9 17889659 17890063 -99972564 - L1MB8 LINE L1 -1 6177 5748 1477 184 32 11 chr9 17891543 17891820 -99970807 - AluJb SINE Alu -29 283 1 2271 108 0 7 chr9 17891860 17892165 -99970462 + AluSq SINE Alu 1 303 -10 1063 109 0 0 chr9 17892235 17892373 -99970254 - AluJo SINE Alu -171 141 4 22 0 0 0 chr9 17892448 17892470 -99970157 + AT_rich Low_complexity Low_complexity 1 22 0 2178 106 0 3 chr9 17892545 17892855 -99969772 + AluSg SINE Alu 1 309 0 2020 158 3 0 chr9 17892867 17893165 -99969462 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr9 17893762 17893784 -99968843 + AT_rich Low_complexity Low_complexity 1 22 0 200 250 98 31 chr9 17894132 17894264 -99968363 - MIR SINE MIR -12 250 111 268 184 44 105 chr9 17894325 17894439 -99968188 - L2 LINE L2 -83 3230 3124 1153 155 0 22 chr9 17894972 17895153 -99967474 + AluJb SINE Alu 134 310 -2 506 292 64 28 chr9 17895167 17895388 -99967239 + MIR SINE MIR 36 262 0 21 57 0 0 chr9 17895396 17895431 -99967196 + AT_rich Low_complexity Low_complexity 1 35 0 194 0 39 0 chr9 17895732 17895758 -99966869 + (GA)n Simple_repeat Simple_repeat 1 27 0 36 40 0 0 chr9 17897236 17897286 -99965341 + AT_rich Low_complexity Low_complexity 1 50 0 381 22 0 0 chr9 17899416 17899462 -99963165 + (TG)n Simple_repeat Simple_repeat 2 47 0 872 133 0 14 chr9 17900646 17900789 -99961838 - MLT1B LTR MaLR 0 390 250 384 59 0 0 chr9 17900900 17900951 -99961676 + (CA)n Simple_repeat Simple_repeat 2 52 0 216 214 0 0 chr9 17901035 17901077 -99961550 + A-rich Low_complexity Low_complexity 1 42 0 192 158 0 0 chr9 17902440 17902478 -99960149 + T-rich Low_complexity Low_complexity 1 38 0 488 59 15 0 chr9 17906848 17906916 -99955711 + (TC)n Simple_repeat Simple_repeat 2 70 0 185 32 0 65 chr9 17909869 17909900 -99952727 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1194 153 70 0 chr9 17910762 17910977 -99951650 + L1PA16 LINE L1 5928 6157 -9 357 328 54 44 chr9 17914987 17915191 -99947436 + L1ME LINE L1 388 593 -5477 2533 129 39 9 chr9 17915225 17915660 -99946967 - L1MB3 LINE L1 -7 6176 5729 1056 220 168 18 chr9 17915895 17916222 -99946405 + MLT1E LTR MaLR 218 593 0 2394 256 84 18 chr9 17916222 17917337 -99945290 + L1ME LINE L1 574 1762 -4318 659 289 15 15 chr9 17917338 17917601 -99945026 + L1ME1 LINE L1 5889 6151 -15 223 307 71 66 chr9 17918276 17918488 -99944139 - L2 LINE L2 -1190 2124 1912 243 103 0 0 chr9 17918824 17918863 -99943764 + (GA)n Simple_repeat Simple_repeat 2 40 0 849 169 110 144 chr9 17918864 17919273 -99943354 + MSTD LTR MaLR 1 395 -1 432 0 0 0 chr9 17919427 17919475 -99943152 + (TG)n Simple_repeat Simple_repeat 2 49 0 275 325 53 9 chr9 17919706 17919820 -99942807 - MIR SINE MIR -27 235 117 234 0 0 0 chr9 17920075 17920101 -99942526 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 39 68 0 0 chr9 17920110 17920184 -99942443 + AT_rich Low_complexity Low_complexity 1 74 0 408 232 84 112 chr9 17920587 17920932 -99941695 - LTR67 LTR ERVL -1 556 153 1230 273 54 14 chr9 17921008 17921378 -99941249 + MLT1I LTR MaLR 25 409 0 497 286 132 18 chr9 17973080 17973300 -99889327 + MIR SINE MIR 4 248 -14 1315 96 0 0 chr9 17973409 17973575 -99889052 + AluSg/x SINE Alu 134 299 -13 359 254 18 36 chr9 17973710 17973820 -99888807 - MER5B DNA MER1_type -3 175 68 21 0 0 0 chr9 17975576 17975597 -99887030 + AT_rich Low_complexity Low_complexity 1 21 0 382 303 92 37 chr9 17975832 17976050 -99886577 + MIR SINE MIR 33 262 0 1384 203 58 14 chr9 17976655 17977014 -99885613 + L1ME2 LINE L1 5790 6164 0 24 32 0 0 chr9 17980788 17980819 -99881808 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 17982140 17982161 -99880466 + AT_rich Low_complexity Low_complexity 1 21 0 829 196 106 5 chr9 17986247 17986446 -99876181 + MER20 DNA MER1_type 1 219 0 1622 159 9 45 chr9 17986753 17987086 -99875541 - L1MA10 LINE L1 -11 6323 6003 282 277 0 0 chr9 17989291 17989356 -99873271 + L2 LINE L2 3249 3313 0 1066 251 73 51 chr9 17989544 17989585 -99873042 + L2 LINE L2 2881 2920 -393 2281 92 7 0 chr9 17989585 17989878 -99872749 + AluSc SINE Alu 4 298 -11 1066 251 73 51 chr9 17989878 17990247 -99872380 + L2 LINE L2 2920 3300 -13 2267 94 3 0 chr9 17990425 17990723 -99871904 + AluSp SINE Alu 1 299 -14 316 285 99 41 chr9 17990905 17990931 -99871696 - MIR SINE MIR -31 231 208 1270 186 86 34 chr9 17990931 17991258 -99871369 - MER2 DNA MER2_type 0 344 1 316 285 99 41 chr9 17991258 17991416 -99871211 - MIR SINE MIR -54 208 33 246 262 19 78 chr9 17991506 17991609 -99871018 + MIR SINE MIR 47 143 -119 289 382 52 15 chr9 17992540 17992676 -99869951 + L3 LINE CR1 1007 1147 -430 2154 144 7 0 chr9 17992706 17993012 -99869615 + AluSx SINE Alu 1 308 -4 2153 98 10 10 chr9 17993383 17993680 -99868947 - AluSg SINE Alu -13 297 1 180 222 0 0 chr9 17993767 17993803 -99868824 + MIR3 SINE MIR 134 169 -39 202 65 22 43 chr9 17994945 17994991 -99867636 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 2168 130 0 3 chr9 17995339 17995752 -99866875 + AluSq SINE Alu 1 412 0 395 91 0 15 chr9 17997311 17997377 -99865250 + (CA)n Simple_repeat Simple_repeat 1 65 0 287 318 28 9 chr9 17998004 17998111 -99864516 - L2 LINE L2 -17 3296 3188 242 298 65 57 chr9 17998237 17998361 -99864266 - L2 LINE L2 -3 3269 3145 449 216 134 0 chr9 17998429 17998526 -99864101 - FLAM_A SINE Alu -32 110 1 809 219 7 0 chr9 18000586 18000737 -99861890 - FRAM SINE Alu -30 146 1 2427 58 3 0 chr9 18002468 18002762 -99859865 + AluY SINE Alu 1 295 -16 204 40 0 0 chr9 18003696 18003721 -99858906 + (CA)n Simple_repeat Simple_repeat 2 26 0 1519 166 23 65 chr9 18005507 18005815 -99856812 - AluSx SINE Alu -17 295 1 258 281 57 0 chr9 18005936 18006037 -99856590 + MIR SINE MIR 74 185 -23 1689 103 64 57 chr9 18006037 18006319 -99856308 + AluSx SINE Alu 1 284 -28 214 226 0 19 chr9 18006530 18006583 -99856044 + (TA)n Simple_repeat Simple_repeat 1 52 0 2015 141 0 0 chr9 18007543 18007827 -99854800 + AluSx SINE Alu 1 284 -28 264 30 0 0 chr9 18007827 18007860 -99854767 + (CA)n Simple_repeat Simple_repeat 2 34 0 211 329 13 0 chr9 18008294 18008373 -99854254 + GA-rich Low_complexity Low_complexity 3 82 0 2092 81 61 10 chr9 18008520 18008816 -99853811 - AluSx SINE Alu -1 311 1 25 31 0 0 chr9 18009536 18009568 -99853059 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr9 18010468 18010488 -99852139 + (TTG)n Simple_repeat Simple_repeat 2 21 0 21 36 0 0 chr9 18010645 18010673 -99851954 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 18010809 18010840 -99851787 + AT_rich Low_complexity Low_complexity 1 31 0 660 288 116 13 chr9 18015354 18015587 -99847040 - MIR SINE MIR -1 261 5 224 324 162 0 chr9 18016058 18016163 -99846464 + L2 LINE L2 3174 3295 -18 541 302 56 22 chr9 18017231 18017410 -99845217 - MIR SINE MIR -31 231 47 21 0 0 0 chr9 18017450 18017471 -99845156 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 18018714 18018736 -99843891 + AT_rich Low_complexity Low_complexity 1 22 0 216 111 0 0 chr9 18019359 18019395 -99843232 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr9 18019415 18019439 -99843188 + (A)n Simple_repeat Simple_repeat 1 24 0 1054 189 173 21 chr9 18020467 18020710 -99841917 + AluJo SINE Alu 5 284 -18 231 36 0 0 chr9 18020710 18020738 -99841889 + (CATA)n Simple_repeat Simple_repeat 2 29 0 269 159 0 0 chr9 18020758 18020802 -99841825 + Alu SINE Alu 250 293 -9 236 261 35 78 chr9 18021424 18021539 -99841088 - MIR SINE MIR -36 226 117 2376 108 0 0 chr9 18021753 18022060 -99840567 - AluY SINE Alu -4 307 1 2386 93 0 0 chr9 18022061 18022361 -99840266 - AluSx SINE Alu -11 301 2 426 261 128 20 chr9 18022596 18022791 -99839836 + MIR SINE MIR 20 235 -27 2310 100 7 0 chr9 18023100 18023401 -99839226 + AluSx SINE Alu 2 304 -8 565 264 58 17 chr9 18023640 18023814 -99838813 + MER5A DNA MER1_type 1 181 -8 539 204 0 19 chr9 18025540 18025648 -99836979 - FRAM SINE Alu -4 172 67 892 118 0 22 chr9 18025780 18025915 -99836712 - FLAM_C SINE Alu 0 143 12 212 356 63 51 chr9 18025929 18026260 -99836367 + L2 LINE L2 2155 2489 -825 218 341 11 44 chr9 18026851 18026942 -99835685 + L2 LINE L2 3185 3272 0 2013 102 49 0 chr9 18027331 18027615 -99835012 + AluSg SINE Alu 2 299 -11 1782 159 17 10 chr9 18027691 18027987 -99834640 + AluSx SINE Alu 1 298 -14 606 253 116 5 chr9 18028257 18028455 -99834172 + MER58A DNA MER1_type 4 223 -1 2326 71 0 10 chr9 18028660 18028956 -99833671 + AluSp SINE Alu 1 293 -20 21 57 0 0 chr9 18029218 18029253 -99833374 + AT_rich Low_complexity Low_complexity 1 35 0 222 37 0 0 chr9 18029362 18029389 -99833238 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 411 272 51 10 chr9 18029940 18030084 -99832543 - MIR SINE MIR -45 163 8 1238 177 156 0 chr9 18030518 18030761 -99831866 + AluJo SINE Alu 1 281 -31 521 125 11 34 chr9 18030783 18030871 -99831756 - FRAM/FAM SINE Alu -98 78 1 1344 158 150 28 chr9 18030929 18031208 -99831419 + AluSx SINE Alu 1 310 0 213 243 81 14 chr9 18031622 18031696 -99830931 + MIR SINE MIR 117 195 -67 2181 105 10 0 chr9 18031914 18032209 -99830418 + AluSx SINE Alu 4 301 -11 450 325 101 5 chr9 18032973 18033161 -99829466 - MIR SINE MIR -4 258 53 23 33 0 0 chr9 18033547 18033577 -99829050 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr9 18034932 18034959 -99827668 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr9 18035385 18035407 -99827220 + (CCCCCA)n Simple_repeat Simple_repeat 5 26 0 2425 44 0 20 chr9 18037172 18037468 -99825159 + AluY SINE Alu 1 290 -21 2086 136 0 0 chr9 18037955 18038242 -99824385 - AluSx SINE Alu -25 287 1 215 357 10 23 chr9 18038861 18039065 -99823562 + GA-rich Low_complexity Low_complexity 1 201 0 207 0 0 0 chr9 18043746 18043769 -99818858 + (T)n Simple_repeat Simple_repeat 1 23 0 1475 190 3 28 chr9 18044092 18044381 -99818246 + AluJb SINE Alu 1 282 -30 1262 219 12 45 chr9 18045776 18046109 -99816518 + MER102b DNA MER1_type 1 322 -19 22 0 0 0 chr9 18052759 18052781 -99809846 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 18053403 18053424 -99809203 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr9 18055518 18055551 -99807076 + (CA)n Simple_repeat Simple_repeat 1 33 0 267 31 0 0 chr9 18056286 18056318 -99806309 + (CA)n Simple_repeat Simple_repeat 2 33 0 24 0 0 0 chr9 18056855 18056879 -99805748 + AT_rich Low_complexity Low_complexity 1 24 0 192 97 0 0 chr9 18057418 18057449 -99805178 + (CGGG)n Simple_repeat Simple_repeat 3 33 0 224 208 0 0 chr9 18058227 18058275 -99804352 + CT-rich Low_complexity Low_complexity 1 48 0 186 136 0 76 chr9 18060269 18060335 -99802292 + (TCTCCC)n Simple_repeat Simple_repeat 4 64 0 21 36 0 0 chr9 18061078 18061106 -99801521 + AT_rich Low_complexity Low_complexity 1 28 0 210 118 0 0 chr9 18062460 18062494 -99800133 + (A)n Simple_repeat Simple_repeat 1 34 0 1236 110 0 0 chr9 18064036 18064200 -99798427 + AluSq SINE Alu 133 296 -17 189 0 0 0 chr9 18065699 18065720 -99796907 + (A)n Simple_repeat Simple_repeat 1 21 0 1991 121 3 25 chr9 18065792 18066106 -99796521 - AluSx SINE Alu -5 307 1 2004 105 0 0 chr9 18066254 18066512 -99796115 + AluSx SINE Alu 1 258 -54 201 147 0 0 chr9 18066517 18066551 -99796076 + (A)n Simple_repeat Simple_repeat 1 34 0 194 61 0 30 chr9 18066747 18066780 -99795847 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2297 105 0 0 chr9 18066782 18067076 -99795551 - AluSg SINE Alu -16 294 1 2066 103 4 0 chr9 18067135 18067408 -99795219 - AluSp SINE Alu -39 274 1 674 150 9 18 chr9 18067418 18067531 -99795096 - FRAM SINE Alu -24 152 41 2606 62 7 0 chr9 18067543 18067852 -99794775 - AluY SINE Alu 0 311 1 464 167 0 12 chr9 18067852 18067936 -99794691 - AluJo/FLAM SINE Alu -182 130 48 535 230 66 20 chr9 18068092 18068288 -99794339 + L1ME3A LINE L1 5961 6165 -5 21 36 0 0 chr9 18068300 18068328 -99794299 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 52 0 chr9 18069191 18069249 -99793378 - L2 LINE L2 -86 3227 3167 331 345 70 65 chr9 18069493 18069689 -99792938 - L2 LINE L2 -508 2806 2612 2002 132 0 10 chr9 18069689 18069977 -99792650 + AluSq SINE Alu 1 285 -28 331 345 70 65 chr9 18069977 18070224 -99792403 - L2 LINE L2 -702 2612 2361 2226 81 4 0 chr9 18071496 18071768 -99790859 + AluSp SINE Alu 23 295 -18 2362 103 0 0 chr9 18071981 18072282 -99790345 + AluSx SINE Alu 4 304 -8 2369 53 0 11 chr9 18074258 18074571 -99788056 - AluY SINE Alu 0 310 1 499 313 94 0 chr9 18075292 18075493 -99787134 + MIR SINE MIR 13 232 -30 247 287 13 80 chr9 18075542 18075692 -99786935 + Charlie8 DNA MER1_type 10 149 -2268 205 309 60 24 chr9 18076302 18076386 -99786241 - MIR3 SINE MIR -4 204 118 261 255 0 0 chr9 18076521 18076572 -99786055 - MER63 DNA MER1_type -27 1035 985 1838 136 3 7 chr9 18076654 18076941 -99785686 - AluSx SINE Alu -3 309 24 2109 86 4 4 chr9 18077042 18077311 -99785316 + AluY SINE Alu 27 295 -16 711 281 65 5 chr9 18077766 18077983 -99784644 - MIR SINE MIR -11 251 22 405 287 78 24 chr9 18078305 18078472 -99784155 + L1MC4a LINE L1 5773 5948 -1860 1860 157 3 31 chr9 18078569 18078888 -99783739 + AluJb SINE Alu 3 312 0 2171 106 13 0 chr9 18078899 18079200 -99783427 + AluSq SINE Alu 3 307 -6 243 0 0 0 chr9 18079258 18079285 -99783342 + (TA)n Simple_repeat Simple_repeat 2 28 0 25 31 0 0 chr9 18079286 18079318 -99783309 + AT_rich Low_complexity Low_complexity 1 32 0 1570 186 0 18 chr9 18079774 18080053 -99782574 + AluJb SINE Alu 26 299 -13 208 256 120 51 chr9 18080263 18080380 -99782247 + L2 LINE L2 3167 3291 -22 224 247 59 47 chr9 18081107 18081192 -99781435 + L2 LINE L2 3186 3271 -1 346 223 41 8 chr9 18081945 18082066 -99780561 + L1MC4 LINE L1 1995 6983 -1339 2141 98 25 0 chr9 18082084 18082370 -99780257 + AluSx SINE Alu 1 293 -19 2246 110 0 0 chr9 18084892 18085193 -99777434 - AluSx SINE Alu -11 301 1 359 301 102 19 chr9 18085876 18086132 -99776495 + L2 LINE L2 2150 2426 -888 304 284 91 40 chr9 18086147 18086323 -99776304 + LTR68 LTR ERV1 219 403 -337 266 308 91 41 chr9 18086636 18086857 -99775770 + L2 LINE L2 2461 2692 -622 2298 99 0 7 chr9 18087043 18087345 -99775282 + AluY SINE Alu 1 300 -11 254 143 333 0 chr9 18087434 18087518 -99775109 + L2 LINE L2 3199 3310 -3 1624 209 45 57 chr9 18088257 18088681 -99773946 - MLT1D LTR MaLR 0 505 87 1909 134 32 0 chr9 18088681 18088965 -99773662 - AluSg SINE Alu -17 293 1 1624 209 45 57 chr9 18088965 18089051 -99773576 - MLT1D LTR MaLR -418 87 1 2305 81 0 0 chr9 18090062 18090359 -99772268 - AluY SINE Alu -14 297 1 488 171 59 17 chr9 18090704 18090861 -99771766 + MER106B DNA MER1_type 57 223 -13 1845 164 6 16 chr9 18091297 18091609 -99771018 + AluJo SINE Alu 1 309 -3 255 237 66 13 chr9 18093269 18093345 -99769282 - MIR SINE MIR -98 164 85 1942 157 3 3 chr9 18093625 18093924 -99768703 + AluJb SINE Alu 1 299 -13 235 127 18 36 chr9 18095222 18095277 -99767350 + GA-rich Low_complexity Low_complexity 3 56 0 2623 33 0 3 chr9 18096120 18096423 -99766204 - AluY SINE Alu -8 303 2 516 235 71 38 chr9 18096850 18097033 -99765594 - L3b LINE CR1 -212 1371 1183 385 241 37 59 chr9 18098050 18098237 -99764390 - L1MC5 LINE L1 -61 7900 7718 2222 123 3 0 chr9 18098303 18098603 -99764024 - AluSq SINE Alu -12 301 1 392 273 31 23 chr9 18099548 18099676 -99762951 + L2 LINE L2 3167 3295 -18 281 303 50 30 chr9 18099684 18099837 -99762790 - MIR SINE MIR -59 149 46 376 291 184 20 chr9 18099920 18100116 -99762511 + MIR SINE MIR 20 247 -15 1296 131 5 41 chr9 18101004 18101225 -99761402 + AluJb SINE Alu 85 297 -15 1990 134 7 0 chr9 18101226 18101518 -99761109 + AluSx SINE Alu 1 294 -18 261 0 0 0 chr9 18104306 18104335 -99758292 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1875 149 0 3 chr9 18104338 18104620 -99758007 - AluSx SINE Alu -31 281 1 765 243 23 6 chr9 18105384 18105561 -99757066 + MER5A DNA MER1_type 1 180 -9 2051 110 3 3 chr9 18106487 18106777 -99755850 - AluSq SINE Alu -23 290 1 2303 89 0 3 chr9 18107181 18107472 -99755155 + AluSx SINE Alu 1 290 -22 26 0 0 0 chr9 18107472 18107498 -99755129 + AT_rich Low_complexity Low_complexity 1 26 0 186 43 0 0 chr9 18107498 18107521 -99755106 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2409 80 0 3 chr9 18107756 18108058 -99754569 + AluY SINE Alu 1 301 -10 482 234 91 53 chr9 18108112 18108509 -99754118 + L1ME4a LINE L1 5706 6117 -4 196 299 294 5 chr9 18108854 18109038 -99753589 - MIR SINE MIR -13 249 13 1339 155 39 113 chr9 18109347 18109657 -99752970 + AluJo SINE Alu 14 300 -12 1379 147 63 98 chr9 18109937 18110292 -99752335 + L1MB8 LINE L1 5753 6119 -59 2633 55 0 0 chr9 18110292 18110603 -99752024 + AluY SINE Alu 1 311 0 1379 147 63 98 chr9 18110603 18110629 -99751998 + L1MB8 LINE L1 6119 6144 -34 2222 93 0 0 chr9 18110629 18110920 -99751707 + AluSc SINE Alu 1 291 -18 1379 147 63 98 chr9 18110920 18110978 -99751649 + L1MB8 LINE L1 6144 6178 0 1709 132 4 4 chr9 18111691 18111949 -99750678 - AluSx SINE Alu -23 289 32 246 256 48 76 chr9 18111950 18112239 -99750388 + L1ME4a LINE L1 5653 5933 -188 2138 109 0 0 chr9 18112342 18112656 -99749971 + AluSc SINE Alu 1 314 0 372 329 43 101 chr9 18112832 18113227 -99749400 + L2 LINE L2 2901 3272 0 23 33 0 0 chr9 18114225 18114255 -99748372 + AT_rich Low_complexity Low_complexity 1 30 0 313 271 127 8 chr9 18114486 18114604 -99748023 - L2 LINE L2 -40 3232 3101 197 65 32 0 chr9 18114655 18114686 -99747941 + (CTA)n Simple_repeat Simple_repeat 1 32 0 1800 140 31 10 chr9 18115734 18116026 -99746601 - AluSx SINE Alu -14 298 1 432 141 0 65 chr9 18116084 18116176 -99746451 + AluS SINE Alu 221 306 -4 331 169 0 15 chr9 18116183 18116248 -99746379 - MER69 DNA AcHobo -1097 129 66 1152 221 56 9 chr9 18117849 18118170 -99744457 + L1ME1 LINE L1 5831 6166 0 233 213 0 21 chr9 18118588 18118635 -99743992 + L2 LINE L2 3224 3269 -3 * 234 340 110 0 chr9 18118617 18118717 -99743910 + L2 LINE L2 3185 3295 -18 2867 212 158 35 chr9 18118717 18118790 -99743837 - Tigger6a DNA MER2_type -514 1083 1020 2314 69 10 3 chr9 18118790 18119078 -99743549 - AluY SINE Alu -21 290 1 2867 212 158 35 chr9 18119078 18119845 -99742782 - Tigger6a DNA MER2_type -577 1020 108 2549 57 0 0 chr9 18119845 18120142 -99742485 - AluY SINE Alu -14 297 1 2867 212 158 35 chr9 18120142 18120265 -99742362 - Tigger6a DNA MER2_type -1489 108 1 233 299 41 10 chr9 18120487 18120584 -99742043 + MIR SINE MIR 113 212 -50 1722 190 3 7 chr9 18120601 18120901 -99741726 + AluJb SINE Alu 1 299 -13 635 291 82 10 chr9 18120919 18121125 -99741502 - MIR SINE MIR -7 255 35 487 191 148 26 chr9 18122265 18122380 -99740247 - FLAM_A SINE Alu -4 129 1 2089 53 0 109 chr9 18122440 18122778 -99739849 - AluY SINE Alu 0 301 1 427 240 0 10 chr9 18123027 18123131 -99739496 - MLT1L LTR MaLR -361 254 152 911 98 0 0 chr9 18125249 18125371 -99737256 + AluY SINE Alu 184 305 -6 348 148 0 45 chr9 18125371 18125459 -99737168 + (GGAAA)n Simple_repeat Simple_repeat 1 84 0 244 314 82 25 chr9 18125873 18126032 -99736595 - MIR SINE MIR -12 250 83 215 356 135 10 chr9 18126001 18126105 -99736522 + MIR SINE MIR 36 152 -56 * 245 297 80 29 chr9 18126179 18126317 -99736310 - MER117 DNA MER1_type -38 159 15 302 231 133 49 chr9 18127192 18127335 -99735292 - MIR SINE MIR -78 184 30 377 239 113 0 chr9 18127897 18128039 -99734588 - L1ME4a LINE L1 0 6121 5964 1824 150 0 0 chr9 18128080 18128354 -99734273 - AluSx SINE Alu -2 310 37 2255 112 0 0 chr9 18128718 18129021 -99733606 + AluSx SINE Alu 1 303 -9 597 276 148 0 chr9 18131730 18131947 -99730680 - MIR SINE MIR -11 251 3 2376 85 0 0 chr9 18132278 18132571 -99730056 + AluSg SINE Alu 1 293 -17 2341 92 0 3 chr9 18132819 18133124 -99729503 - AluSp SINE Alu -8 305 2 243 125 0 0 chr9 18133203 18133243 -99729384 + (CA)n Simple_repeat Simple_repeat 1 40 0 697 154 0 0 chr9 18133691 18133795 -99728832 + AluJb SINE Alu 1 104 -208 406 163 0 58 chr9 18133801 18133887 -99728740 + AluJ/FRAM SINE Alu 220 300 -2 266 244 22 33 chr9 18184783 18184873 -99677754 - L2 LINE L2 -5 3308 3220 2257 123 0 0 chr9 18184936 18185244 -99677383 + AluSq SINE Alu 2 309 -4 710 299 63 61 chr9 18185857 18186319 -99676308 - LTR33 LTR ERVL 0 521 59 988 149 10 55 chr9 18186484 18186685 -99675942 + MIR SINE MIR 70 261 -1 1131 137 24 161 chr9 18186816 18187020 -99675607 - MER33 DNA MER1_type -2262 323 191 2220 117 7 0 chr9 18187020 18187320 -99675307 - AluSq SINE Alu -11 302 1 1131 137 24 161 chr9 18187320 18187487 -99675140 - MER33 DNA MER1_type -2394 191 3 795 176 15 8 chr9 18187775 18187906 -99674721 + FLAM_C SINE Alu 2 133 0 606 133 0 0 chr9 18188048 18188131 -99674496 + AluSg/x SINE Alu 212 294 -15 2018 141 7 0 chr9 18188207 18188506 -99674121 - AluSx SINE Alu -11 301 1 1435 148 0 59 chr9 18188681 18188937 -99673690 + AluJo SINE Alu 69 309 -3 2283 89 0 3 chr9 18189274 18189565 -99673062 - AluSc SINE Alu -19 290 1 635 300 75 43 chr9 18189565 18189938 -99672689 + MLT1K LTR MaLR 182 566 -22 1699 157 71 40 chr9 18190177 18190528 -99672099 - THE1C LTR MaLR -8 367 6 423 83 0 0 chr9 18190528 18190588 -99672039 + (TCTG)n Simple_repeat Simple_repeat 3 62 0 1158 108 0 0 chr9 18190589 18190747 -99671880 + AluY SINE Alu 140 297 -14 282 344 72 62 chr9 18190829 18191120 -99671507 + L2 LINE L2 2961 3254 -18 1934 240 76 12 chr9 18191321 18191805 -99670822 - LTR40a LTR ERVL 0 519 5 210 319 69 58 chr9 18191858 18192178 -99670449 - L2 LINE L2 -236 3036 2687 2371 88 0 3 chr9 18192306 18192611 -99670016 - AluY SINE Alu -7 304 1 2281 98 7 0 chr9 18192733 18193029 -99669598 - AluSc SINE Alu -11 298 1 441 289 17 17 chr9 18193081 18193254 -99669373 + MER117 DNA MER1_type 7 179 -18 21 0 0 0 chr9 18193865 18193886 -99668741 + AT_rich Low_complexity Low_complexity 1 21 0 4318 175 67 9 chr9 18194349 18195090 -99667537 + L1 LINE L1 2552 3363 -2783 1669 168 83 46 chr9 18195090 18195417 -99667210 - MER44D DNA MER2_type 0 609 1 4318 175 67 9 chr9 18195417 18195640 -99666987 + L1 LINE L1 3363 3572 -2574 1195 44 0 0 chr9 18195640 18195775 -99666852 + AluY SINE Alu 1 135 -176 2328 78 10 0 chr9 18196115 18196409 -99666218 - AluSx SINE Alu -15 297 1 2288 104 10 0 chr9 18196503 18196802 -99665825 - AluY SINE Alu -9 302 1 779 181 15 15 chr9 18197103 18197236 -99665391 - FLAM_A SINE Alu 0 133 1 198 167 0 0 chr9 18197803 18197839 -99664788 + (CA)n Simple_repeat Simple_repeat 1 36 0 768 148 48 91 chr9 18197857 18198066 -99664561 + pTR5 LTR ERV1 742 941 -1497 4877 142 21 63 chr9 18198224 18199082 -99663545 + LTR12 LTR ERV1 5 826 0 2168 84 52 7 chr9 18199252 18199539 -99663088 - AluY SINE Alu -11 300 1 713 204 17 41 chr9 18199681 18199853 -99662774 + MER45A DNA AcHobo 1 168 -10 319 330 28 22 chr9 18200450 18200632 -99661995 + MIR SINE MIR 80 262 0 190 333 0 0 chr9 18200688 18200751 -99661876 + MIR SINE MIR 81 143 -119 2157 113 0 3 chr9 18200827 18201129 -99661498 - AluSq SINE Alu -12 301 1 776 99 0 0 chr9 18201225 18201326 -99661301 - AluY SINE Alu -7 304 204 298 358 25 8 chr9 18201454 18201574 -99661053 - MIR SINE MIR -121 141 20 1991 124 3 17 chr9 18201665 18201963 -99660664 - AluSx SINE Alu -18 294 1 490 169 0 0 chr9 18202354 18202431 -99660196 + FLAM SINE Alu 48 124 -19 2457 65 13 3 chr9 18202815 18203124 -99659503 - AluSx SINE Alu 0 312 1 293 321 74 32 chr9 18203171 18203361 -99659266 - MER20 DNA MER1_type -17 202 5 2409 87 0 0 chr9 18203769 18204078 -99658549 + AluY SINE Alu 1 309 -2 2189 63 35 3 chr9 18204199 18204486 -99658141 + AluY SINE Alu 3 298 -13 24 0 0 0 chr9 18205627 18205651 -99656976 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr9 18205725 18205752 -99656875 + GC_rich Low_complexity Low_complexity 1 27 0 2462 81 0 10 chr9 18207070 18207380 -99655247 + AluY SINE Alu 1 307 -4 539 327 61 70 chr9 18207691 18208147 -99654480 + L2 LINE L2 2845 3296 -17 188 180 0 20 chr9 18208150 18208200 -99654427 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 477 257 68 20 chr9 18209301 18209449 -99653178 + MIR SINE MIR 58 212 -50 411 119 45 0 chr9 18209548 18209636 -99652991 - AluJo SINE Alu 0 314 224 1021 156 0 56 chr9 18209636 18209815 -99652812 - AluJo SINE Alu -142 170 2 650 171 9 0 chr9 18210269 18210374 -99652253 + FLAM_C SINE Alu 2 107 -36 1485 175 103 12 chr9 18210722 18211053 -99651574 + MER46B DNA MER2_type 1 236 0 2399 101 0 0 chr9 18211330 18211636 -99650991 - AluSx SINE Alu -6 306 1 469 286 16 8 chr9 18212414 18212540 -99650087 + MARNA DNA Mariner 92 218 -368 584 214 0 0 chr9 18212567 18212665 -99649962 + AluJ/FLAM SINE Alu 2 99 -213 838 188 0 0 chr9 18212666 18212799 -99649828 + AluJo/FRAM SINE Alu 173 305 -7 244 316 11 21 chr9 18212927 18213022 -99649605 - Charlie7 DNA MER1_type -2517 95 2 734 313 109 25 chr9 18213171 18213722 -99648905 - L2 LINE L2 0 3313 2722 1775 139 45 7 chr9 18213811 18214099 -99648528 + AluJb SINE Alu 1 299 -13 1943 147 0 3 chr9 18214260 18214566 -99648061 + AluSx SINE Alu 1 305 0 2378 55 0 36 chr9 18216216 18216523 -99646104 - AluY SINE Alu -15 296 1 234 0 0 0 chr9 18216953 18216979 -99645648 + (CA)n Simple_repeat Simple_repeat 1 26 0 829 194 0 8 chr9 18217114 18217248 -99645379 - FLAM_A SINE Alu 0 133 1 2142 107 16 13 chr9 18217871 18218181 -99644446 + AluSx SINE Alu 1 311 -1 4341 171 31 38 chr9 18219184 18219238 -99643389 + L1MB2 LINE L1 5114 5167 -1004 2516 64 0 6 chr9 18219238 18219550 -99643077 + AluY SINE Alu 1 310 -1 4341 171 31 38 chr9 18219550 18220514 -99642113 + L1MB2 LINE L1 5167 6124 -47 2076 112 7 10 chr9 18220514 18220809 -99641818 + AluSx SINE Alu 1 294 -18 4341 171 31 38 chr9 18220809 18220854 -99641773 + L1MB2 LINE L1 6124 6168 -3 3186 171 36 85 chr9 18220878 18221436 -99641191 + L1M3 LINE L1 4664 5248 -932 1978 121 28 10 chr9 18221436 18221726 -99640901 + AluSx SINE Alu 1 295 -17 3186 171 36 85 chr9 18221726 18221742 -99640885 + L1M3 LINE L1 5248 5263 -917 1535 186 27 24 chr9 18221742 18221857 -99640770 + AluJo SINE Alu 8 121 -191 189 0 0 0 chr9 18221857 18221878 -99640749 + (TA)n Simple_repeat Simple_repeat 1 21 0 1535 186 27 24 chr9 18221878 18222057 -99640570 + AluJo SINE Alu 121 303 -9 3186 171 36 85 chr9 18222057 18222383 -99640244 + L1M3 LINE L1 5263 5483 -697 2269 87 3 0 chr9 18222383 18222682 -99639945 + AluY SINE Alu 1 300 -11 3186 171 36 85 chr9 18222682 18222989 -99639638 + L1M3 LINE L1 5483 5803 -377 2382 91 0 0 chr9 18223589 18223886 -99638741 - AluSg SINE Alu -13 297 1 2124 107 0 33 chr9 18224076 18224376 -99638251 + AluSx SINE Alu 1 290 -22 198 0 0 0 chr9 18227337 18227359 -99635268 + (A)n Simple_repeat Simple_repeat 1 22 0 27 81 0 0 chr9 18231210 18231272 -99631355 + GC_rich Low_complexity Low_complexity 1 62 0 206 200 83 0 chr9 18231463 18231523 -99631104 + C-rich Low_complexity Low_complexity 3 67 0 23 0 0 0 chr9 18231964 18231987 -99630640 + GC_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr9 18232964 18232984 -99629643 + (GA)n Simple_repeat Simple_repeat 1 20 0 2434 72 10 3 chr9 18233181 18233485 -99629142 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr9 18233783 18233804 -99628823 + AT_rich Low_complexity Low_complexity 1 21 0 632 308 91 19 chr9 18234449 18234890 -99627737 + L2 LINE L2 2761 3239 -74 3127 129 32 66 chr9 18234890 18235268 -99627359 + MER6A DNA MER2_type 3 353 -512 2303 93 3 10 chr9 18235268 18235568 -99627059 + AluSx SINE Alu 1 298 -14 3127 129 32 66 chr9 18235568 18235809 -99626818 + MER6A DNA MER2_type 353 601 -4 632 308 91 19 chr9 18235809 18235889 -99626738 + L2 LINE L2 3239 3312 -1 1324 217 41 4 chr9 18236019 18236286 -99626341 + Charlie1b DNA MER1_type 1 277 -246 2069 116 21 0 chr9 18236292 18236576 -99626051 - AluSx SINE Alu -17 295 6 8312 113 103 77 chr9 18236640 18238293 -99624334 - pTR5 LTR ERV1 0 2438 743 1801 210 113 18 chr9 18238293 18238735 -99623892 - MLT1D LTR MaLR -21 484 1 294 182 140 91 chr9 18238736 18238848 -99623779 + Charlie1b DNA MER1_type 333 455 -2306 2215 105 3 0 chr9 18238848 18239142 -99623485 + AluSp SINE Alu 6 300 -13 294 182 140 91 chr9 18239142 18239172 -99623455 + Charlie1b DNA MER1_type 455 482 -41 2225 106 0 13 chr9 18239186 18239488 -99623139 + AluSx SINE Alu 1 298 -14 1134 282 98 22 chr9 18239549 18239996 -99622631 + MLT1L LTR MaLR 133 613 -2 2207 182 174 16 chr9 18240019 18240564 -99622063 - MER99 DNA DNA -4 824 194 1890 151 0 3 chr9 18240923 18241208 -99621419 - AluSx SINE Alu -28 284 1 279 246 15 0 chr9 18241278 18241343 -99621284 + L2 LINE L2 3207 3272 0 2266 71 13 42 chr9 18241762 18242071 -99620556 - AluY SINE Alu -11 300 1 4320 124 8 58 chr9 18242952 18243676 -99618951 - LTR12 LTR ERV1 0 688 1 2110 129 3 0 chr9 18243726 18244020 -99618607 - AluSp SINE Alu -18 295 1 814 143 21 7 chr9 18244020 18244160 -99618467 - AluJb SINE Alu -8 304 163 1343 142 49 24 chr9 18244209 18244455 -99618172 + AluSx SINE Alu 61 312 0 407 243 12 20 chr9 18244455 18244573 -99618054 - L1MC4 LINE L1 -14 8028 7850 * 755 200 69 6 chr9 18244572 18244747 -99617880 - L1MB7 LINE L1 -41 6143 5958 2262 101 7 3 chr9 18245092 18245390 -99617237 + AluSq SINE Alu 1 299 -14 351 299 103 20 chr9 18245805 18246030 -99616597 + MIR SINE MIR 8 248 -14 266 188 125 104 chr9 18247159 18247303 -99615324 + MER117 DNA MER1_type 2 148 -49 2206 100 3 23 chr9 18248627 18248928 -99613699 - AluSp SINE Alu -18 295 1 665 120 0 0 chr9 18249258 18249350 -99613277 - AluSp/q SINE Alu -16 297 206 2270 106 0 0 chr9 18249676 18249977 -99612650 - AluSg SINE Alu -9 301 1 2203 106 0 13 chr9 18251483 18251784 -99610843 - AluSx SINE Alu -15 297 1 432 191 9 45 chr9 18251819 18251929 -99610698 + MIR SINE MIR 123 228 -34 362 259 29 72 chr9 18252396 18252535 -99610092 - L2 LINE L2 0 3313 3181 232 317 106 0 chr9 18252620 18252743 -99609884 - MIR SINE MIR -93 169 34 218 344 70 25 chr9 18253102 18253259 -99609368 - L2 LINE L2 -198 3074 2911 1173 130 0 0 chr9 18253628 18253790 -99608837 - AluSx SINE Alu -150 162 1 1389 203 174 9 chr9 18253915 18254255 -99608372 - MSTD LTR MaLR 0 396 1 185 348 37 22 chr9 18254290 18254425 -99608202 - L2 LINE L2 -541 2773 2637 772 173 27 79 chr9 18254744 18254809 -99607818 - MLT1A1 LTR MaLR 0 365 298 2241 98 0 20 chr9 18254809 18255115 -99607512 - AluSq SINE Alu -12 301 2 772 173 27 79 chr9 18255115 18255279 -99607348 - MLT1A1 LTR MaLR -67 298 86 1969 148 3 0 chr9 18255279 18255595 -99607032 - AluSx SINE Alu 0 317 1 772 173 27 79 chr9 18255595 18255677 -99606950 - MLT1A1 LTR MaLR -279 86 1 338 178 133 11 chr9 18255692 18255782 -99606845 + L1MC4a LINE L1 5336 5436 -738 1703 159 8 42 chr9 18255788 18255970 -99606657 + L1MB3 LINE L1 5835 6001 -182 2284 79 21 3 chr9 18255970 18256261 -99606366 - AluSp SINE Alu -16 297 2 1703 159 8 42 chr9 18256261 18256431 -99606196 + L1MB3 LINE L1 6001 6175 -8 1441 239 103 7 chr9 18256691 18257147 -99605480 + L1MC4a LINE L1 5479 5978 -1830 1542 180 35 31 chr9 18257219 18257378 -99605249 - AluJo SINE Alu -22 290 128 243 0 0 0 chr9 18257378 18257405 -99605222 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1542 180 35 31 chr9 18257405 18257534 -99605093 - AluJo SINE Alu -184 128 1 2151 108 0 7 chr9 18257568 18257878 -99604749 + AluSp SINE Alu 1 308 0 3390 163 42 3 chr9 18258043 18258663 -99603964 - LTR48B LTR ERV1 0 644 1 904 252 22 36 chr9 18258663 18258941 -99603686 + MLT1H LTR MaLR 37 310 -239 2543 74 0 0 chr9 18258943 18259253 -99603374 + AluSg SINE Alu 1 310 0 2282 105 7 0 chr9 18259374 18259740 -99602887 + AluSg SINE Alu 1 368 0 433 274 135 37 chr9 18260916 18261131 -99601496 - MLT1J2 LTR MaLR -19 431 196 189 0 0 0 chr9 18261382 18261403 -99601224 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 2576 74 0 0 chr9 18261440 18261751 -99600876 + AluY SINE Alu 1 311 0 2224 115 0 0 chr9 18261773 18262061 -99600566 + AluSx SINE Alu 1 288 -24 227 297 20 95 chr9 18262350 18262444 -99600183 - L2 LINE L2 0 3313 3214 2185 31 0 4 chr9 18262444 18262700 -99599927 + L1PA5 LINE L1 5893 6147 -7 297 0 0 0 chr9 18262706 18262739 -99599888 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 227 297 20 95 chr9 18262739 18262785 -99599842 - L2 LINE L2 -104 3209 3177 1947 120 53 0 chr9 18263268 18263551 -99599076 - AluSg SINE Alu -12 298 1 413 149 0 0 chr9 18263581 18263655 -99598972 + AluS SINE Alu 1 74 -227 23 0 0 0 chr9 18263791 18263814 -99598813 + AT_rich Low_complexity Low_complexity 1 23 0 184 287 194 8 chr9 18264191 18264320 -99598307 - MIR3 SINE MIR -23 185 33 686 263 114 73 chr9 18264485 18264983 -99597644 - MLT1L LTR MaLR -93 495 6 2121 85 3 65 chr9 18265037 18265344 -99597283 + AluSp SINE Alu 1 288 -25 3938 188 23 55 chr9 18266767 18266833 -99595794 + L1MB7 LINE L1 4596 4663 -1521 960 153 6 12 chr9 18266833 18266996 -99595631 + FRAM SINE Alu 1 162 -4 3938 188 23 55 chr9 18266996 18267679 -99594948 + L1MB7 LINE L1 4663 5367 -817 2207 107 0 3 chr9 18267679 18267977 -99594650 + AluSq SINE Alu 1 297 -16 3938 188 23 55 chr9 18267977 18268350 -99594277 + L1MB7 LINE L1 5367 5751 -433 637 221 0 8 chr9 18268350 18268472 -99594155 + FLAM_A SINE Alu 1 121 -12 3938 188 23 55 chr9 18268472 18268987 -99593640 + L1MB7 LINE L1 5751 6184 0 22 0 0 0 chr9 18269374 18269396 -99593231 + AT_rich Low_complexity Low_complexity 1 22 0 482 281 166 5 chr9 18270606 18270823 -99591804 - MIR SINE MIR -9 253 2 383 204 9 56 chr9 18270837 18270945 -99591682 - L1ME LINE L1 -302 5819 5717 3149 208 135 14 chr9 18270982 18271220 -99591407 - L1ME LINE L1 -756 5390 5182 2179 123 3 0 chr9 18271220 18271528 -99591099 - AluSc SINE Alu 0 309 1 3149 208 135 14 chr9 18271528 18272197 -99590430 - L1ME LINE L1 -964 5182 4404 288 214 165 29 chr9 18272818 18272921 -99589706 - MLT1J LTR MaLR -275 212 59 562 199 144 11 chr9 18273028 18273184 -99589443 - MER5A DNA MER1_type -6 183 4 2513 70 0 6 chr9 18273621 18273934 -99588693 + AluY SINE Alu 1 311 0 1928 114 4 4 chr9 18274095 18274367 -99588260 + AluSc SINE Alu 37 308 -1 1420 174 56 10 chr9 18274409 18274697 -99587930 + L1MB1 LINE L1 4817 5117 -1029 3931 159 16 39 chr9 18274698 18274756 -99587871 + L1MB1 LINE L1 5443 5501 -667 1822 170 0 19 chr9 18274756 18275068 -99587559 + AluJo SINE Alu 1 306 -6 3931 159 16 39 chr9 18275068 18275367 -99587260 + L1MB1 LINE L1 5501 5805 -363 2625 52 0 3 chr9 18275367 18275674 -99586953 + AluY SINE Alu 1 306 -5 3931 159 16 39 chr9 18275674 18275727 -99586900 + L1MB1 LINE L1 5805 5858 -310 2004 125 3 10 chr9 18275727 18276030 -99586597 + AluSx SINE Alu 1 301 -11 3931 159 16 39 chr9 18276030 18276359 -99586268 + L1MB1 LINE L1 5858 6167 -1 2270 91 50 0 chr9 18276395 18276692 -99585935 + AluSx SINE Alu 1 312 0 213 0 36 0 chr9 18277114 18277142 -99585485 + (TTTG)n Simple_repeat Simple_repeat 4 68 0 2284 70 0 3 chr9 18277142 18277427 -99585200 - AluY SINE Alu -1 311 1 6635 83 7 0 chr9 18278324 18279205 -99583422 + L1PA13 LINE L1 5277 6163 0 2369 87 7 0 chr9 18279207 18279516 -99583111 + AluY SINE Alu 1 311 0 579 100 0 20 chr9 18279517 18279617 -99583010 + (GGAA)n Simple_repeat Simple_repeat 2 99 0 7573 152 35 11 chr9 18279627 18280975 -99581652 - L1 LINE L1 -1183 4963 3649 983 84 36 6 chr9 18280975 18281142 -99581485 + CT-rich Low_complexity Low_complexity 1 172 0 2007 133 3 3 chr9 18281145 18281445 -99581182 - AluSq SINE Alu -9 304 5 7573 152 35 11 chr9 18281445 18281472 -99581155 - L1 LINE L1 -2498 3648 3623 2568 52 10 0 chr9 18281472 18281780 -99580847 - AluY SINE Alu 0 311 1 271 63 0 175 chr9 18281922 18281958 -99580669 + MER53 DNA DNA 1 23 -166 1964 161 39 6 chr9 18281958 18282293 -99580334 + L1MC1 LINE L1 5988 6333 0 271 63 0 175 chr9 18282293 18282319 -99580308 + MER53 DNA DNA 23 52 -137 1331 171 105 8 chr9 18282369 18282626 -99580001 - AluJb SINE Alu -30 282 1 640 148 109 0 chr9 18282628 18282756 -99579871 + MER53 DNA DNA 45 186 -3 187 254 146 0 chr9 18282864 18282919 -99579708 + L2 LINE L2 3251 3313 0 2172 100 3 3 chr9 18283189 18283478 -99579149 + AluSx SINE Alu 1 289 -23 431 45 120 0 chr9 18283478 18283611 -99579016 + (TA)n Simple_repeat Simple_repeat 2 150 0 370 163 76 54 chr9 18283719 18283811 -99578816 - MER93b LTR ERV1 -279 94 1 2785 89 19 8 chr9 18283935 18284295 -99578332 + THE1B LTR MaLR 1 364 0 202 274 0 0 chr9 18284404 18284455 -99578172 - L2 LINE L2 -304 2968 2918 208 254 0 18 chr9 18284632 18284687 -99577940 + (CATA)n Simple_repeat Simple_repeat 3 56 0 22 0 0 0 chr9 18285672 18285694 -99576933 + AT_rich Low_complexity Low_complexity 1 22 0 288 111 0 0 chr9 18286264 18286309 -99576318 + (CA)n Simple_repeat Simple_repeat 2 46 0 2441 64 0 0 chr9 18286940 18287236 -99575391 - AluY SINE Alu -15 296 1 2146 95 0 16 chr9 18287262 18287568 -99575059 - AluY SINE Alu -10 301 1 2278 112 3 0 chr9 18287573 18287885 -99574742 - AluSp SINE Alu 0 313 1 25 31 0 0 chr9 18287895 18287927 -99574700 + AT_rich Low_complexity Low_complexity 1 32 0 2027 91 31 18 chr9 18287927 18288213 -99574414 - AluSx SINE Alu -7 305 16 709 168 9 0 chr9 18288216 18288323 -99574304 - FLAM_A SINE Alu -23 119 12 2411 60 17 0 chr9 18288647 18288945 -99573682 - AluY SINE Alu -8 303 1 2265 64 54 10 chr9 18290121 18290419 -99572208 - AluY SINE Alu 0 311 1 2093 130 3 0 chr9 18290696 18290997 -99571630 + AluSc SINE Alu 1 302 -7 2141 121 10 0 chr9 18291215 18291513 -99571114 + AluSq SINE Alu 1 301 -12 2782 92 3 24 chr9 18291543 18291914 -99570713 + THE1B LTR MaLR 2 364 0 965 206 22 5 chr9 18292503 18292687 -99569940 + MER5A DNA MER1_type 1 187 -2 672 130 22 0 chr9 18292912 18293004 -99569623 + AluJ/FLAM SINE Alu 2 95 -217 1138 131 51 70 chr9 18293113 18293327 -99569300 + AluSg/x SINE Alu 100 309 -3 2565 118 22 0 chr9 18294142 18294498 -99568129 - THE1B LTR MaLR 0 364 1 2334 89 0 0 chr9 18294570 18294874 -99567753 - AluY SINE Alu -7 304 1 207 297 40 0 chr9 18295094 18295168 -99567459 + MIR SINE MIR 81 157 -105 221 305 76 66 chr9 18295202 18295399 -99567228 - MIR SINE MIR -21 241 43 346 307 44 9 chr9 18296292 18296406 -99566221 - L2 LINE L2 0 3272 3155 1050 129 12 6 chr9 18296999 18297162 -99565465 + AluSc SINE Alu 136 299 -10 2308 155 28 0 chr9 18297187 18297541 -99565086 + THE1B LTR MaLR 1 364 0 2139 95 37 10 chr9 18297916 18298210 -99564417 + AluY SINE Alu 2 303 -8 2085 106 3 3 chr9 18298416 18298728 -99563899 + AluSx SINE Alu 1 312 0 749 127 9 9 chr9 18298932 18299042 -99563585 - AluSg/x SINE Alu -9 301 192 1379 176 3 107 chr9 18299223 18299449 -99563178 + L1M4 LINE L1 4520 4768 -1378 264 30 0 0 chr9 18299449 18299482 -99563145 + (TTAA)n Simple_repeat Simple_repeat 1 33 0 1792 130 7 47 chr9 18299491 18299790 -99562837 - AluSq SINE Alu -26 287 1 1379 176 3 107 chr9 18299790 18299917 -99562710 + L1M4 LINE L1 4776 4845 -1301 3656 155 85 79 chr9 18299997 18300817 -99561810 + MER21B LTR ERV1 13 837 -26 2966 228 39 34 chr9 18300818 18301074 -99561553 - L1M4 LINE L1 -386 5735 5482 2060 116 24 0 chr9 18301074 18301366 -99561261 - AluSq SINE Alu -14 299 1 2966 228 39 34 chr9 18301366 18302027 -99560600 - L1M4 LINE L1 -639 5482 3527 2254 87 3 50 chr9 18302185 18302508 -99560119 + AluY SINE Alu 1 308 -3 2087 150 3 10 chr9 18302682 18302995 -99559632 - AluSx SINE Alu -1 311 1 2189 104 0 13 chr9 18303032 18303331 -99559296 - AluSc SINE Alu -14 295 1 203 156 0 0 chr9 18304374 18304406 -99558221 + (TG)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr9 18304501 18304524 -99558103 + AT_rich Low_complexity Low_complexity 1 23 0 2349 60 0 0 chr9 18305161 18305488 -99557139 - AluY SINE Alu 0 327 1 2228 215 30 57 chr9 18306460 18307263 -99555364 - Zaphod DNA AcHobo -1 825 118 218 250 45 0 chr9 18307269 18307313 -99555314 + L2 LINE L2 3240 3285 -28 2006 150 10 0 chr9 18307532 18307832 -99554795 - AluJo SINE Alu -4 308 6 215 329 14 0 chr9 18308588 18308661 -99553966 + MIR SINE MIR 30 103 -105 737 276 106 37 chr9 18309243 18309649 -99552978 + MLT1K LTR MaLR 147 580 -8 2278 97 0 0 chr9 18310476 18310766 -99551861 + AluSc SINE Alu 1 290 -19 312 311 51 137 chr9 18310939 18311184 -99551443 + L2 LINE L2 2825 3011 -261 1867 168 7 0 chr9 18311184 18311494 -99551133 - AluJo SINE Alu 0 312 1 312 311 51 137 chr9 18311494 18311721 -99550906 + L2 LINE L2 3011 3256 -16 188 348 82 39 chr9 18311816 18312049 -99550578 + L2 LINE L2 2816 3058 -214 2597 58 0 0 chr9 18312348 18312657 -99549970 - AluY SINE Alu -2 309 1 6526 82 10 0 chr9 18312659 18313537 -99549090 - L1PA13 LINE L1 0 6163 5277 2258 112 0 0 chr9 18313943 18314239 -99548388 + AluSx SINE Alu 1 296 -16 2181 93 45 0 chr9 18314244 18314533 -99548094 + AluSx SINE Alu 1 302 -10 2029 125 81 36 chr9 18317623 18317982 -99544645 - THE1C LTR MaLR 0 375 1 1395 304 85 24 chr9 18318126 18318630 -99543997 + MLT1K LTR MaLR 13 547 -41 768 287 69 3 chr9 18318903 18319206 -99543421 - L1MB8 LINE L1 -244 5877 5555 1227 204 37 20 chr9 18319223 18319517 -99543110 + L1MB8 LINE L1 5879 6177 -1 195 129 0 0 chr9 18319836 18319867 -99542760 + (T)n Simple_repeat Simple_repeat 1 31 0 437 278 60 0 chr9 18321044 18321177 -99541450 + MIR SINE MIR 103 243 -19 2283 103 0 25 chr9 18321668 18321988 -99540639 + AluSx SINE Alu 1 312 0 2038 138 20 0 chr9 18322025 18322330 -99540297 + AluSx SINE Alu 1 311 -1 257 49 73 0 chr9 18322338 18322379 -99540248 + A-rich Low_complexity Low_complexity 2 45 0 254 356 25 6 chr9 18323123 18323283 -99539344 + LTR16C LTR ERVL 329 491 0 386 305 83 85 chr9 18323420 18323843 -99538784 + L2 LINE L2 2250 2671 -643 3991 210 44 43 chr9 18324472 18325646 -99536981 + L1MA9 LINE L1 5118 6274 -38 217 283 38 0 chr9 18325683 18325736 -99536891 + MIR SINE MIR 56 110 -98 1995 253 43 15 chr9 18326185 18326723 -99535904 - HsTC2 DNA Tc2 -65 1833 1281 319 274 126 37 chr9 18326720 18326855 -99535772 - HsTC2 DNA Tc2 -1750 148 2 * 207 203 73 112 chr9 18326890 18326923 -99535704 - MIR SINE MIR -77 131 98 1856 139 0 21 chr9 18326923 18327211 -99535416 + AluJo SINE Alu 1 282 -30 224 0 65 0 chr9 18327214 18327245 -99535382 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 207 203 73 112 chr9 18327245 18327361 -99535266 - MIR SINE MIR -112 96 1 192 77 0 0 chr9 18327996 18328022 -99534605 + (TA)n Simple_repeat Simple_repeat 1 26 0 2496 80 0 0 chr9 18330434 18330735 -99531892 + AluSc SINE Alu 1 301 -8 313 291 29 62 chr9 18331261 18331471 -99531156 + L1ME LINE L1 4862 5064 -1082 324 316 44 44 chr9 18331548 18331773 -99530854 + L1ME LINE L1 5175 5399 -747 1495 277 74 5 chr9 18331785 18332215 -99530412 + LTR16B LTR ERVL 3 462 -2 291 231 51 51 chr9 18332272 18332389 -99530238 + L1ME LINE L1 5545 5661 -509 2425 68 0 0 chr9 18332395 18332689 -99529938 + AluY SINE Alu 1 294 -17 1175 149 54 18 chr9 18332690 18332911 -99529716 + L1MD2 LINE L1 6121 6349 -10 680 256 93 83 chr9 18332921 18333783 -99528844 + L1ME1 LINE L1 5162 6020 -101 1523 99 5 22 chr9 18336049 18336271 -99526356 - AluSx SINE Alu -94 218 1 591 354 8 16 chr9 18336452 18336695 -99525932 + MIR SINE MIR 1 241 -21 2274 108 0 3 chr9 18337246 18337553 -99525074 + AluSx SINE Alu 1 306 -6 206 287 139 9 chr9 18337701 18337816 -99524811 - MIR SINE MIR -55 207 78 3922 109 10 2 chr9 18337849 18338434 -99524193 + L1P LINE L1 4659 5248 -898 22 0 0 0 chr9 18338608 18338630 -99523997 + AT_rich Low_complexity Low_complexity 1 22 0 2176 98 17 7 chr9 18338739 18339035 -99523592 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr9 18339169 18339190 -99523437 + AT_rich Low_complexity Low_complexity 1 21 0 493 298 67 6 chr9 18339713 18339891 -99522736 - MIR SINE MIR -59 203 15 2099 128 0 0 chr9 18340080 18340377 -99522250 + AluSx SINE Alu 1 297 -15 1773 152 0 17 chr9 18340389 18340691 -99521936 + 7SLRNA srpRNA srpRNA 1 297 -23 34 45 0 15 chr9 18340696 18340730 -99521897 + AT_rich Low_complexity Low_complexity 1 35 -30 1803 188 0 7 chr9 18340730 18341038 -99521589 - AluJo SINE Alu -6 306 1 34 45 0 15 chr9 18341038 18341069 -99521558 + AT_rich Low_complexity Low_complexity 35 65 0 2235 113 0 3 chr9 18341340 18341650 -99520977 - AluSc SINE Alu 0 309 1 6662 89 43 0 chr9 18341659 18342658 -99519969 - L1PA8A LINE L1 -3 6128 5116 370 182 25 25 chr9 18342828 18342949 -99519678 + T-rich Low_complexity Low_complexity 2 122 0 341 238 176 11 chr9 18343267 18343578 -99519049 + MLT1J LTR MaLR 118 448 -2 22 0 0 0 chr9 18344000 18344022 -99518605 + AT_rich Low_complexity Low_complexity 1 22 0 1776 125 50 11 chr9 18344024 18344303 -99518324 - AluSx SINE Alu -11 301 12 2163 107 3 7 chr9 18344533 18344831 -99517796 + AluSq SINE Alu 1 297 -16 1559 200 23 0 chr9 18345768 18346068 -99516559 + AluJo SINE Alu 1 307 -5 355 293 53 30 chr9 18346076 18346209 -99516418 - MIR SINE MIR -50 212 77 2387 98 15 70 chr9 18346286 18346343 -99516284 + THE1C LTR MaLR 1 60 -315 2806 96 6 0 chr9 18346343 18346696 -99515931 + THE1A LTR MaLR 1 355 0 2387 98 15 70 chr9 18346696 18346809 -99515818 + THE1C LTR MaLR 60 178 -197 2239 103 3 16 chr9 18346809 18347119 -99515508 - AluSg SINE Alu -4 306 1 2387 98 15 70 chr9 18347119 18347344 -99515283 + THE1C LTR MaLR 178 375 0 263 159 48 32 chr9 18347451 18347514 -99515113 - MLT1J LTR MaLR -2 509 446 288 348 119 17 chr9 18347873 18347991 -99514636 + MER91A DNA MER1_type 33 162 -34 217 289 12 60 chr9 18348135 18348218 -99514409 - MIR SINE MIR -119 143 65 376 293 62 51 chr9 18349298 18349554 -99513073 + L1MC/D LINE L1 5016 5274 -872 592 328 69 17 chr9 18349562 18349645 -99512982 + L1MC/D LINE L1 5296 5373 -836 432 0 0 0 chr9 18349645 18349693 -99512934 + (CA)n Simple_repeat Simple_repeat 1 48 0 592 328 69 17 chr9 18349693 18349704 -99512923 + L1MC/D LINE L1 5373 5382 -827 1810 139 35 3 chr9 18349704 18349991 -99512636 + AluSx SINE Alu 1 296 -16 592 328 69 17 chr9 18349991 18350319 -99512308 + L1MC/D LINE L1 5382 5736 -473 2449 88 0 0 chr9 18350328 18350633 -99511994 - AluSc SINE Alu -4 305 1 26 0 0 0 chr9 18351102 18351128 -99511499 + AT_rich Low_complexity Low_complexity 1 26 0 9395 27 3 232 chr9 18351128 18352917 -99509710 - SVA Other Other -1 1385 7 237 108 0 0 chr9 18353165 18353202 -99509425 + (T)n Simple_repeat Simple_repeat 1 37 0 2206 121 0 3 chr9 18353226 18353531 -99509096 + AluSx SINE Alu 1 304 -8 36 23 0 0 chr9 18353685 18353728 -99508899 + AT_rich Low_complexity Low_complexity 1 43 0 2068 118 27 3 chr9 18354206 18354502 -99508125 + AluSx SINE Alu 1 303 -9 723 203 0 16 chr9 18354662 18354790 -99507837 + FLAM_C SINE Alu 2 127 -6 320 220 312 9 chr9 18355173 18355282 -99507345 - MIR SINE MIR 0 262 121 769 254 228 27 chr9 18355334 18355668 -99506959 + L2 LINE L2 2485 2885 -429 629 184 34 61 chr9 18355779 18355926 -99506701 + L2 LINE L2 3171 3313 0 204 359 0 16 chr9 18355939 18356003 -99506624 + MIR SINE MIR 25 87 -175 2179 121 3 3 chr9 18356028 18356334 -99506293 + AluSx SINE Alu 1 306 -6 212 306 204 0 chr9 18356557 18356655 -99505972 - L2 LINE L2 -6 3307 3190 33 66 0 0 chr9 18356763 18356824 -99505803 + AT_rich Low_complexity Low_complexity 1 61 0 2122 108 64 28 chr9 18358189 18358549 -99504078 + THE1C LTR MaLR 1 373 -2 2498 81 0 0 chr9 18359891 18360198 -99502429 - AluY SINE Alu -4 307 1 180 0 0 0 chr9 18360202 18360222 -99502405 + (T)n Simple_repeat Simple_repeat 1 20 0 261 128 0 0 chr9 18361602 18361649 -99500978 + (TG)n Simple_repeat Simple_repeat 2 48 0 530 251 142 6 chr9 18362955 18363138 -99499489 - LTR33 LTR ERVL 0 521 314 689 246 97 5 chr9 18363208 18363403 -99499224 - LTR33 LTR ERVL -306 215 3 227 269 90 0 chr9 18363410 18363488 -99499139 + MIR SINE MIR 46 130 -132 2098 206 78 49 chr9 18363713 18363926 -99498701 - L1ME1 LINE L1 -5 6161 5956 3100 86 54 19 chr9 18363926 18364355 -99498272 - MLT2A1 LTR ERVL 0 444 1 2098 206 78 49 chr9 18364355 18364771 -99497856 - L1ME1 LINE L1 -210 5956 5514 3460 126 67 7 chr9 18364779 18365333 -99497294 + L1MB2 LINE L1 5583 6169 -2 201 307 95 29 chr9 18365842 18366020 -99496607 + L2 LINE L2 258 3042 -230 693 147 10 0 chr9 18366181 18366283 -99496344 - FLAM_A SINE Alu -9 133 31 193 273 225 29 chr9 18367185 18367274 -99495353 - MIR SINE MIR -7 255 185 2037 106 39 0 chr9 18367274 18367556 -99495071 - AluSx SINE Alu -19 293 1 193 273 225 29 chr9 18367556 18367675 -99494952 - MIR SINE MIR -77 185 6 369 254 152 6 chr9 18368109 18368274 -99494353 - HAL1b LINE L1 -254 1094 906 323 295 62 70 chr9 18368430 18368488 -99494139 - HAL1 LINE L1 -1182 1325 1268 2106 109 33 0 chr9 18368488 18368790 -99493837 - AluSx SINE Alu 0 312 1 323 295 62 70 chr9 18368790 18368958 -99493669 - HAL1 LINE L1 -1239 1268 1101 257 236 56 45 chr9 18368973 18369062 -99493565 - HAL1 LINE L1 -1601 906 817 2221 120 3 0 chr9 18370046 18370346 -99492281 + AluSq SINE Alu 1 301 -12 7315 95 22 4 chr9 18370359 18371427 -99491200 + L1MA1 LINE L1 5212 6298 -4 357 283 9 9 chr9 18371470 18371576 -99491051 - MIR SINE MIR -2 260 155 481 180 27 18 chr9 18371581 18371692 -99490935 - LTR26 LTR ERV1 0 603 492 806 209 6 211 chr9 18371701 18372138 -99490489 - LTR8 LTR ERV1 -362 365 1 449 333 20 0 chr9 18372139 18372286 -99490341 - MIR SINE MIR -111 151 2 327 308 144 19 chr9 18372518 18372726 -99489901 - MIR SINE MIR 0 262 29 1713 251 98 26 chr9 18372726 18373216 -99489411 + MLT1E3 LTR MaLR 1 454 -170 195 42 0 0 chr9 18373216 18373240 -99489387 + (ATTG)n Simple_repeat Simple_repeat 2 25 0 1391 180 10 69 chr9 18373240 18373417 -99489210 - AluJo SINE Alu -25 287 134 2151 125 7 0 chr9 18373417 18373706 -99488921 + AluSc SINE Alu 3 293 -16 1391 180 10 69 chr9 18373706 18373833 -99488794 - AluJo SINE Alu -178 134 1 1713 251 98 26 chr9 18373833 18373923 -99488704 + MLT1E3 LTR MaLR 453 624 0 315 339 0 47 chr9 18374104 18374231 -99488396 + L2 LINE L2 2959 3079 -193 342 0 0 0 chr9 18374613 18374651 -99487976 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr9 18375622 18375660 -99486967 + AT_rich Low_complexity Low_complexity 1 38 0 235 265 49 117 chr9 18376066 18376228 -99486399 - MLT1K LTR MaLR -44 544 394 207 176 0 0 chr9 18376937 18376971 -99485656 + (TG)n Simple_repeat Simple_repeat 2 35 0 2476 77 0 0 chr9 18377521 18377832 -99484795 + AluY SINE Alu 1 311 0 1251 129 0 16 chr9 18377915 18378101 -99484526 + AluSg/x SINE Alu 106 288 -24 414 238 23 21 chr9 18379184 18379297 -99483330 + MIR SINE MIR 23 113 -95 381 331 64 17 chr9 18380765 18380937 -99481690 - L2 LINE L2 0 3313 3134 1266 282 93 9 chr9 18381557 18382021 -99480606 + HERV16 LTR ERVL 816 1318 -3678 518 283 28 67 chr9 18382311 18382594 -99480033 + HERV16 LTR ERVL 3241 3512 -1484 21 0 0 0 chr9 18383300 18383321 -99479306 + AT_rich Low_complexity Low_complexity 1 21 0 1405 188 66 57 chr9 18384170 18384612 -99478015 - Charlie4a DNA MER1_type -31 477 32 397 247 242 16 chr9 18384636 18384822 -99477805 - MIR SINE MIR -8 254 27 317 219 65 49 chr9 18386616 18386803 -99475824 - Tigger1 DNA MER2_type -797 800 675 399 277 38 19 chr9 18386960 18387119 -99475508 - MARNA DNA Mariner -27 559 398 876 240 59 18 chr9 18388016 18388237 -99474390 + MIR SINE MIR 12 241 -21 1741 191 171 7 chr9 18388373 18388813 -99473814 + MLT2B1 LTR ERVL 1 512 -8 438 297 20 27 chr9 18389407 18389586 -99473041 + MIR SINE MIR 31 206 -56 1339 177 23 16 chr9 18391185 18391483 -99471144 - MER61B LTR ERV1 -29 396 3 22 0 0 0 chr9 18392202 18392224 -99470403 + AT_rich Low_complexity Low_complexity 1 22 0 510 299 25 6 chr9 18394030 18394187 -99468440 + L2 LINE L2 2593 2752 -562 296 296 20 0 chr9 18394272 18394370 -99468257 - MER103 DNA DNA -7 159 60 1085 238 5 0 chr9 18394824 18395047 -99467580 - MER58A DNA MER1_type 0 224 1 23 0 0 0 chr9 18395217 18395240 -99467387 + AT_rich Low_complexity Low_complexity 1 23 0 1869 157 14 10 chr9 18395240 18395534 -99467093 - AluJb SINE Alu -17 295 1 777 283 94 17 chr9 18396311 18396661 -99465966 + MLT1J1 LTR MaLR 70 446 0 28 0 0 0 chr9 18397189 18397217 -99465410 + AT_rich Low_complexity Low_complexity 1 28 0 1696 86 0 5 chr9 18397642 18397862 -99464765 - AluSq SINE Alu -6 307 89 2217 228 96 27 chr9 18398371 18398454 -99464173 + L1ME3A LINE L1 5244 5320 -850 2393 95 0 13 chr9 18398454 18398769 -99463858 + AluY SINE Alu 1 311 0 2217 228 96 27 chr9 18398769 18398790 -99463837 + L1ME3A LINE L1 5320 5338 -832 1503 104 3 190 chr9 18398790 18399154 -99463473 + AluJb SINE Alu 1 296 -6 2217 228 96 27 chr9 18399154 18399889 -99462738 + L1ME3A LINE L1 5338 6142 -28 748 326 13 0 chr9 18399906 18400145 -99462482 + MIR SINE MIR 20 261 -1 23 78 0 0 chr9 18400565 18400616 -99462011 + AT_rich Low_complexity Low_complexity 1 51 0 415 301 9 0 chr9 18401051 18401164 -99461463 + L2 LINE L2 3200 3313 0 22 56 0 0 chr9 18401216 18401252 -99461375 + AT_rich Low_complexity Low_complexity 1 36 0 505 278 64 0 chr9 18402001 18402188 -99460439 - L1MB2 LINE L1 -3 6168 5970 2560 71 0 3 chr9 18402251 18402561 -99460066 - AluSq SINE Alu -4 309 1 260 309 50 53 chr9 18402772 18403192 -99459435 - L1MC4a LINE L1 -237 5884 5520 1114 182 0 0 chr9 18403222 18403403 -99459224 + AluJb SINE Alu 129 309 -3 380 264 130 34 chr9 18403667 18403906 -99458721 - L1ME3A LINE L1 -219 5951 5690 3852 222 59 112 chr9 18403945 18405932 -99456695 - Charlie1 DNA MER1_type 0 2761 908 2220 66 0 17 chr9 18405932 18406245 -99456382 + AluY SINE Alu 1 308 0 3852 222 59 112 chr9 18406245 18406548 -99456079 - Charlie1 DNA MER1_type -1853 908 591 4064 172 36 8 chr9 18406555 18407376 -99455251 - L1MB3 LINE L1 -12 6171 5328 1518 238 31 46 chr9 18407492 18408031 -99454596 - Charlie1 DNA MER1_type -2228 533 3 2263 87 0 13 chr9 18408032 18408330 -99454297 - AluY SINE Alu -17 294 1 339 349 0 8 chr9 18408336 18408468 -99454159 - L1ME3A LINE L1 -501 5661 5531 1334 272 74 5 chr9 18408511 18408941 -99453686 - LTR16B LTR ERVL -2 462 3 337 316 44 44 chr9 18408953 18409178 -99453449 - L1ME3A LINE L1 -747 5399 5175 242 291 29 62 chr9 18409255 18409465 -99453162 - L1ME3A LINE L1 -1082 5064 4862 2495 80 0 0 chr9 18409991 18410292 -99452335 - AluSc SINE Alu -8 301 1 192 77 0 0 chr9 18412704 18412730 -99449897 + (TA)n Simple_repeat Simple_repeat 1 26 0 208 203 73 112 chr9 18413365 18413481 -99449146 + MIR SINE MIR 1 120 -110 224 0 65 0 chr9 18413481 18413512 -99449115 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1863 139 0 21 chr9 18413515 18413803 -99448824 - AluJo SINE Alu -30 282 1 208 203 73 112 chr9 18413803 18413836 -99448791 + MIR SINE MIR 122 153 -77 279 255 10 49 chr9 18413871 18413973 -99448654 + HsTC2 DNA Tc2 2 99 -1799 1762 253 43 15 chr9 18414003 18414541 -99448086 + HsTC2 DNA Tc2 1281 1833 -65 219 283 38 0 chr9 18414990 18415043 -99447584 - MIR SINE MIR -98 110 56 3573 206 44 41 chr9 18415080 18416219 -99446408 - L1MA9 LINE L1 -38 6274 5150 420 307 80 85 chr9 18416881 18417305 -99445322 - L2 LINE L2 -643 2671 2250 257 49 73 0 chr9 18418345 18418386 -99444241 + T-rich Low_complexity Low_complexity 2 45 0 2050 138 20 0 chr9 18418394 18418699 -99443928 - AluSx SINE Alu -1 311 1 2291 103 0 25 chr9 18418736 18419056 -99443571 - AluSx SINE Alu 0 312 1 440 278 60 0 chr9 18419547 18419680 -99442947 - MIR SINE MIR -19 243 103 188 65 0 32 chr9 18420857 18420888 -99441739 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 1097 204 37 20 chr9 18421206 18421500 -99441127 - L1MB8 LINE L1 -1 6177 5879 641 287 69 3 chr9 18421517 18421820 -99440807 + L1MB8 LINE L1 5555 5877 -244 1239 304 85 24 chr9 18422093 18422597 -99440030 - MLT1K LTR MaLR -41 547 13 1863 125 81 36 chr9 18422741 18423100 -99439527 + THE1C LTR MaLR 1 375 0 2172 94 45 0 chr9 18426190 18426478 -99436149 - AluSx SINE Alu -11 301 1 2265 112 0 0 chr9 18426483 18426779 -99435848 - AluSx SINE Alu -16 296 1 22 0 0 0 chr9 18427031 18427053 -99435574 + AT_rich Low_complexity Low_complexity 1 22 0 2174 98 17 7 chr9 18427162 18427458 -99435169 + AluSg SINE Alu 1 299 -11 21 0 0 0 chr9 18427592 18427613 -99435014 + AT_rich Low_complexity Low_complexity 1 21 0 508 298 67 6 chr9 18428136 18428314 -99434313 - MIR SINE MIR -59 203 15 2095 128 0 0 chr9 18428503 18428800 -99433827 + AluSx SINE Alu 1 297 -15 1777 156 0 17 chr9 18428812 18429114 -99433513 + 7SLRNA srpRNA srpRNA 1 297 -23 34 45 0 15 chr9 18429119 18429153 -99433474 + AT_rich Low_complexity Low_complexity 1 35 -30 1833 188 0 7 chr9 18429153 18429461 -99433166 - AluJo SINE Alu -6 306 1 34 45 0 15 chr9 18429461 18429492 -99433135 + AT_rich Low_complexity Low_complexity 35 65 0 2237 113 0 3 chr9 18429763 18430073 -99432554 - AluSc SINE Alu 0 309 1 6202 89 14 1 chr9 18430082 18431541 -99431086 - L1PA8A LINE L1 -3 6128 4659 216 287 139 9 chr9 18431574 18431689 -99430938 + MIR SINE MIR 78 207 -55 2296 104 0 3 chr9 18431837 18432144 -99430483 - AluSx SINE Alu -6 306 1 597 354 8 16 chr9 18432695 18432938 -99429689 - MIR SINE MIR -21 241 1 2310 92 3 13 chr9 18433119 18433433 -99429194 + AluSx SINE Alu 1 311 -1 189 0 0 0 chr9 18433695 18433716 -99428911 + (TA)n Simple_repeat Simple_repeat 2 22 0 2536 45 3 6 chr9 18433718 18434030 -99428597 - AluY SINE Alu 0 311 1 709 142 0 0 chr9 18435069 18435175 -99427452 + AluSg/x SINE Alu 188 293 -19 1426 262 146 21 chr9 18436174 18436839 -99425788 - L1ME3A LINE L1 -6 6164 5417 23 33 0 0 chr9 18440382 18440412 -99422215 + AT_rich Low_complexity Low_complexity 1 30 0 2064 123 7 3 chr9 18441146 18441455 -99421172 - AluSx SINE Alu -2 310 1 274 389 43 0 chr9 18441694 18441833 -99420794 - L2 LINE L2 -2 3270 3126 2368 92 10 0 chr9 18441907 18442211 -99420416 + AluSp SINE Alu 1 307 -6 611 121 0 107 chr9 18442784 18442924 -99419703 + MER112 DNA MER1_type 129 253 -7 1758 188 13 10 chr9 18443148 18443446 -99419181 - AluJb SINE Alu -12 300 2 2250 81 10 3 chr9 18444218 18444513 -99418114 + AluSq SINE Alu 1 297 -16 22 56 0 0 chr9 18444691 18444727 -99417900 + AT_rich Low_complexity Low_complexity 1 36 0 861 262 97 37 chr9 18445365 18445900 -99416727 - L1ME4a LINE L1 -3 6118 5552 340 329 144 0 chr9 18446458 18446604 -99416023 + MIR SINE MIR 31 197 -65 2636 63 0 0 chr9 18446699 18447031 -99415596 + L1PA7 LINE L1 5818 6149 -5 6113 129 29 94 chr9 18447315 18448684 -99413943 + pTR5 LTR ERV1 742 2021 -417 254 248 30 20 chr9 18448685 18448786 -99413841 + LTR30 LTR ERV1 541 642 -80 1112 101 34 6 chr9 18448787 18448965 -99413662 + LTR12 LTR ERV1 480 662 -52 309 205 193 4 chr9 18448965 18449071 -99413556 + MIR SINE MIR 33 156 -59 613 275 21 21 chr9 18449072 18449134 -99413493 - MIR SINE MIR -1 261 200 2123 136 0 7 chr9 18449134 18449436 -99413191 - AluSx SINE Alu -12 300 1 613 275 21 21 chr9 18449436 18449562 -99413065 - MIR SINE MIR -61 201 73 1979 148 10 0 chr9 18449845 18450149 -99412478 + AluSq SINE Alu 1 307 -6 265 111 0 22 chr9 18450198 18450243 -99412384 - MLT2B1 LTR ERVL 0 464 421 252 0 0 0 chr9 18450249 18450277 -99412350 + (TTCCC)n Simple_repeat Simple_repeat 1 28 0 700 155 35 17 chr9 18450280 18450454 -99412173 + CT-rich Low_complexity Low_complexity 2 178 0 1894 167 57 50 chr9 18450476 18450913 -99411714 - MLT2B1 LTR ERVL -80 440 1 271 240 0 13 chr9 18450913 18450988 -99411639 - MER117 DNA MER1_type -116 81 8 540 274 52 7 chr9 18451506 18451641 -99410986 + MIR3 SINE MIR 20 160 -48 1777 65 0 0 chr9 18451883 18452097 -99410530 + AluY SINE Alu 87 300 -11 1426 262 146 21 chr9 18453025 18453690 -99408937 + L1ME3A LINE L1 5417 6164 -6 709 142 0 0 chr9 18454689 18454795 -99407832 - AluSg/x SINE Alu -19 291 186 2454 36 3 10 chr9 18455834 18456136 -99406491 + AluY SINE Alu 1 300 -11 24 0 0 0 chr9 18456231 18456255 -99406372 + AT_rich Low_complexity Low_complexity 1 24 0 1921 118 7 0 chr9 18456255 18456525 -99406102 - AluSq SINE Alu -5 308 37 500 290 71 29 chr9 18457312 18457718 -99404909 + MLT2E LTR ERVL 1 663 0 201 39 0 0 chr9 18458334 18458360 -99404267 + (TTA)n Simple_repeat Simple_repeat 2 27 0 353 179 36 0 chr9 18458620 18458704 -99403923 - HsTC2 DNA Tc2 -66 1832 1746 2220 97 45 0 chr9 18458707 18458995 -99403632 + AluSx SINE Alu 1 301 -11 640 233 230 19 chr9 18459426 18459743 -99402884 + MER113 DNA MER1_type? 135 518 -3 2150 122 0 0 chr9 18459764 18460058 -99402569 - AluSq SINE Alu -19 294 1 1490 210 95 29 chr9 18460279 18460838 -99401789 - MLT1E2 LTR MaLR -6 620 1 21 57 0 0 chr9 18461970 18462005 -99400622 + AT_rich Low_complexity Low_complexity 1 35 0 2327 106 13 0 chr9 18462483 18462784 -99399843 + AluSq SINE Alu 1 305 -8 898 246 20 0 chr9 18463036 18463231 -99399396 + MIR SINE MIR 8 206 -56 252 336 87 19 chr9 18463275 18463379 -99399248 + L2 LINE L2 271 381 -2933 211 378 53 20 chr9 18463500 18463651 -99398976 + L2 LINE L2 577 732 -2582 2758 176 40 4 chr9 18463658 18464181 -99398446 + MER44D DNA MER2_type 6 602 -3 2255 92 7 0 chr9 18464396 18464689 -99397938 - AluSq SINE Alu -18 295 1 2276 84 0 3 chr9 18465354 18465641 -99396986 + AluSg SINE Alu 1 286 -24 307 243 44 66 chr9 18465751 18465796 -99396831 - L1ME4a LINE L1 -211 5910 5866 1623 168 61 18 chr9 18465796 18465869 -99396758 - MER2 DNA MER2_type -1 343 275 1937 164 0 0 chr9 18465869 18466161 -99396466 + AluJb SINE Alu 1 292 -20 1623 168 61 18 chr9 18466161 18466415 -99396212 - MER2 DNA MER2_type -69 275 2 307 243 44 66 chr9 18466415 18466550 -99396077 - L1ME4a LINE L1 -255 5866 5734 2046 81 0 0 chr9 18466709 18466968 -99395659 + AluY SINE Alu 41 299 -12 308 319 49 10 chr9 18467064 18467268 -99395359 - L1ME4a LINE L1 -462 5659 5448 829 182 38 19 chr9 18467355 18467514 -99395113 + FRAM SINE Alu 2 163 -3 458 263 0 0 chr9 18467630 18467744 -99394883 + MLT1J1 LTR MaLR 6 119 -327 888 273 122 35 chr9 18467762 18468195 -99394432 - MLT1E2 LTR MaLR -81 497 52 574 150 60 15 chr9 18468789 18468922 -99393705 - L1MB4 LINE L1 -4 6176 6038 1596 204 18 0 chr9 18469059 18469343 -99393284 + AluJo SINE Alu 1 289 -23 234 0 0 0 chr9 18469353 18469379 -99393248 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2351 87 0 3 chr9 18470213 18470511 -99392116 + AluSq SINE Alu 1 297 -16 22 35 0 0 chr9 18470690 18470719 -99391908 + AT_rich Low_complexity Low_complexity 1 29 0 890 307 36 16 chr9 18473744 18474190 -99388437 - L1ME3A LINE L1 -230 5940 5486 266 153 17 0 chr9 18474211 18474270 -99388357 + (TA)n Simple_repeat Simple_repeat 1 60 0 260 241 168 0 chr9 18474308 18474541 -99388086 - L1ME3A LINE L1 -739 5427 5162 1280 167 35 60 chr9 18474551 18474773 -99387854 - L1MD2 LINE L1 -10 6349 6136 2418 68 0 0 chr9 18474773 18475067 -99387560 - AluY SINE Alu -17 294 1 1280 167 35 60 chr9 18475067 18475161 -99387466 - L1MD2 LINE L1 -223 6136 6041 615 217 84 0 chr9 18475396 18475539 -99387088 - L1MD2 LINE L1 -318 6041 5887 445 134 24 0 chr9 18475610 18475692 -99386935 - Charlie4 DNA MER1_type 0 1961 1878 751 227 76 22 chr9 18475704 18475929 -99386698 - L1MD2 LINE L1 -495 5669 5433 2830 146 18 81 chr9 18475940 18476592 -99386035 - L1MC1 LINE L1 -5 6328 5718 2136 174 33 2 chr9 18476673 18477069 -99385558 - MSTB LTR MaLR -18 408 1 2315 202 39 32 chr9 18477069 18477427 -99385200 - L1MC1 LINE L1 -621 5723 5369 2246 108 3 13 chr9 18477427 18477742 -99384885 - AluSx SINE Alu 0 312 1 2315 202 39 32 chr9 18477742 18478593 -99384034 - L1MC1 LINE L1 -975 5369 4537 1531 178 24 13 chr9 18478631 18479096 -99383531 - MLT2B1 LTR ERVL 0 520 2 1681 236 58 14 chr9 18479111 18479487 -99383140 - L1MD2 LINE L1 -898 5248 4833 1760 180 45 7 chr9 18479487 18479776 -99382851 + AluJo SINE Alu 1 300 -12 1681 236 58 14 chr9 18479776 18480018 -99382609 - L1MD2 LINE L1 -1313 4833 4603 631 218 224 92 chr9 18480020 18480099 -99382528 + MSTD LTR MaLR 1 68 -328 2368 70 3 7 chr9 18480099 18480397 -99382230 + AluSc SINE Alu 1 297 -12 631 218 224 92 chr9 18480397 18480603 -99382024 + MSTD LTR MaLR 68 343 -53 1771 156 3 59 chr9 18480603 18480924 -99381703 - AluJo SINE Alu -9 303 1 631 218 224 92 chr9 18480924 18480986 -99381641 + MSTD LTR MaLR 343 395 -1 421 309 46 7 chr9 18480991 18481273 -99381354 - L1MD2 LINE L1 -1545 4601 4309 2153 117 7 0 chr9 18481294 18481593 -99381034 + AluSp SINE Alu 1 301 -12 696 187 30 50 chr9 18481598 18481796 -99380831 - L1MA9 LINE L1 -5 7267 7074 23 68 0 0 chr9 18481796 18481840 -99380787 + AT_rich Low_complexity Low_complexity 1 44 0 7493 167 23 37 chr9 18481888 18482205 -99380422 - L1MA9 LINE L1 -182 7090 6770 7896 193 18 10 chr9 18482205 18484715 -99377912 - L1PA15 LINE L1 -1 6164 3638 7493 167 23 37 chr9 18484715 18485586 -99377041 - L1MA9 LINE L1 -502 6770 5888 2371 88 0 0 chr9 18485586 18485883 -99376744 - AluSc SINE Alu -12 297 1 7493 167 23 37 chr9 18485883 18487077 -99375550 - L1MA9 LINE L1 -1384 5888 4741 275 133 0 0 chr9 18487080 18487125 -99375502 - U5 snRNA snRNA -67 49 5 289 247 0 0 chr9 18487126 18487203 -99375424 - L1MD2 LINE L1 -2351 3795 3719 5569 248 71 18 chr9 18487611 18490847 -99371780 - L1MA9 LINE L1 -2410 4696 1589 755 234 0 13 chr9 18490894 18491052 -99371575 + Tigger1 DNA MER2_type 2 157 -2261 * 1304 148 0 9 chr9 18491041 18491258 -99371369 + Tigger1 DNA MER2_type 2202 2416 -2 973 174 14 50 chr9 18491258 18491476 -99371151 - L1MA9 LINE L1 -6786 244 35 2874 245 34 5 chr9 18491591 18492469 -99370158 - L1MD2 LINE L1 -3007 3139 2236 2345 99 3 0 chr9 18493408 18493720 -99368907 + AluSp SINE Alu 1 313 0 2196 102 17 0 chr9 18494342 18494636 -99367991 + AluSc SINE Alu 1 299 -10 490 300 54 77 chr9 18496164 18496477 -99366150 - L2 LINE L2 -50 3222 2917 260 83 125 0 chr9 18497806 18497854 -99364773 - MLT2A1 LTR ERVL 0 453 400 378 169 28 11 chr9 18497855 18498032 -99364595 + (TA)n Simple_repeat Simple_repeat 1 180 0 580 65 71 12 chr9 18498061 18498230 -99364397 + (TA)n Simple_repeat Simple_repeat 2 180 0 375 168 43 0 chr9 18498261 18498517 -99364110 + (TA)n Simple_repeat Simple_repeat 1 267 0 2936 86 5 10 chr9 18498518 18498924 -99363703 - MLT2A1 LTR ERVL -40 404 1 2571 195 11 6 chr9 18498976 18499505 -99363122 + L1MB4 LINE L1 5649 6180 0 466 313 79 45 chr9 18500032 18500476 -99362151 + MLT1J LTR MaLR 1 459 -52 2021 129 52 19 chr9 18500751 18501114 -99361513 - THE1C LTR MaLR 0 375 1 317 95 167 0 chr9 18501697 18501781 -99360846 - THE1C LTR MaLR -268 107 10 2261 57 60 20 chr9 18502173 18502472 -99360155 - AluY SINE Alu 0 311 1 552 225 58 0 chr9 18502541 18502661 -99359966 + L2 LINE L2 3187 3313 0 26 0 0 0 chr9 18503171 18503197 -99359430 + AT_rich Low_complexity Low_complexity 1 26 0 182 268 0 0 chr9 18503271 18503312 -99359315 - MIR SINE MIR 0 262 222 330 352 132 4 chr9 18504048 18504298 -99358329 - L2 LINE L2 -129 3184 2903 1777 160 11 18 chr9 18504494 18504796 -99357831 + AluJb SINE Alu 3 302 0 1331 327 110 31 chr9 18504910 18505058 -99357569 + L2 LINE L2 2211 2346 -967 2172 132 0 0 chr9 18505058 18505362 -99357265 - AluSx SINE Alu -8 304 1 1331 327 110 31 chr9 18505362 18506220 -99356407 + L2 LINE L2 2346 3303 -10 509 225 11 121 chr9 18506304 18506351 -99356276 + MER5B DNA MER1_type 1 52 -126 2394 80 0 3 chr9 18506351 18506651 -99355976 - AluY SINE Alu -12 299 1 509 225 11 121 chr9 18506651 18506785 -99355842 + MER5B DNA MER1_type 52 162 -16 674 310 155 3 chr9 18507099 18507396 -99355231 + L2 LINE L2 2971 3312 -1 2504 56 0 0 chr9 18507551 18507857 -99354770 - AluY SINE Alu -5 306 1 189 307 99 50 chr9 18508091 18508192 -99354435 - L2 LINE L2 -15 3298 3193 327 286 11 0 chr9 18508676 18508767 -99353860 + LTR33 LTR ERVL 1 92 -429 346 280 82 33 chr9 18508861 18508982 -99353645 + LTR33 LTR ERVL 264 378 -143 2142 75 41 10 chr9 18508982 18509276 -99353351 + AluY SINE Alu 1 303 -8 346 280 82 33 chr9 18509276 18509397 -99353230 + LTR33 LTR ERVL 378 518 -3 25 0 0 0 chr9 18510977 18511002 -99351625 + AT_rich Low_complexity Low_complexity 1 25 0 4177 169 20 35 chr9 18511398 18511620 -99351007 + L1MB5 LINE L1 5271 5495 -679 1895 65 4 15 chr9 18511620 18511861 -99350766 + L1PA5 LINE L1 5892 6148 -6 4177 169 20 35 chr9 18511861 18512501 -99350126 + L1MB5 LINE L1 5495 6120 -54 1953 148 7 0 chr9 18512517 18512820 -99349807 - AluSx SINE Alu -7 305 1 481 313 55 15 chr9 18513220 18513421 -99349206 + MIR SINE MIR 49 257 -5 2161 32 0 4 chr9 18515983 18516229 -99346398 - AluY SINE Alu -44 267 23 370 204 179 40 chr9 18517098 18517299 -99345328 + MER112 DNA MER1_type 26 254 -6 34 0 0 0 chr9 18518628 18518662 -99343965 + AT_rich Low_complexity Low_complexity 1 34 0 2201 113 0 0 chr9 18518704 18519006 -99343621 - AluSg SINE Alu -8 302 1 1807 141 4 0 chr9 18519030 18519292 -99343335 + AluSx SINE Alu 32 294 -18 1482 179 61 20 chr9 18519318 18519615 -99343012 - AluJo SINE Alu -3 309 1 1180 123 25 64 chr9 18519938 18520064 -99342563 + L1MA8 LINE L1 6062 6176 -115 1451 195 31 14 chr9 18520064 18520356 -99342271 - AluJb SINE Alu -12 300 4 1180 123 25 64 chr9 18520356 18520464 -99342163 + L1MA8 LINE L1 6176 6287 -4 295 301 72 0 chr9 18520470 18520663 -99341964 + L1M4 LINE L1 5023 5229 -917 270 200 176 12 chr9 18520690 18520775 -99341852 - MLT1J LTR MaLR -299 212 114 340 297 142 29 chr9 18520862 18521245 -99341382 - L2 LINE L2 -140 3173 2733 481 294 25 70 chr9 18521252 18521422 -99341205 - L2 LINE L2 -682 2632 2471 2520 84 0 0 chr9 18521422 18521730 -99340897 + AluSg SINE Alu 1 308 -2 481 294 25 70 chr9 18521730 18521760 -99340867 - L2 LINE L2 -843 2471 2441 1473 96 37 23 chr9 18521769 18521987 -99340640 - MER30 DNA MER1_type -9 221 1 747 270 46 23 chr9 18521998 18522257 -99340370 - L2 LINE L2 -874 2440 2176 472 210 117 25 chr9 18522257 18522419 -99340208 + MER5B DNA MER1_type 1 177 -1 571 254 86 29 chr9 18522429 18522638 -99339989 - L2 LINE L2 -1369 1945 1725 329 232 105 28 chr9 18524193 18524374 -99338253 + Charlie7 DNA MER1_type 2418 2612 0 2673 10 0 0 chr9 18524434 18524761 -99337866 - AluYb8 SINE Alu 0 327 1 287 283 101 51 chr9 18524761 18524899 -99337728 - MER5A DNA MER1_type -37 152 8 726 304 98 24 chr9 18525403 18525955 -99336672 - HAL1b LINE L1 -701 1692 344 2063 150 49 3 chr9 18526011 18526358 -99336269 + MLT1A1 LTR MaLR 1 363 -2 27 87 0 0 chr9 18526367 18526436 -99336191 + AT_rich Low_complexity Low_complexity 1 69 0 348 322 49 7 chr9 18527340 18527483 -99335144 - L1ME4a LINE L1 -295 6062 5914 296 232 61 12 chr9 18527511 18527593 -99335034 + MER20 DNA MER1_type 93 178 -41 647 232 23 64 chr9 18527660 18527880 -99334747 - L1MC5 LINE L1 -31 7930 7720 2655 220 45 7 chr9 18527880 18528429 -99334198 + MER82 DNA MER2_type 1 570 -83 19646 103 10 36 chr9 18528441 18529126 -99333501 - L1PA7 LINE L1 0 6154 5453 2501 77 0 0 chr9 18529126 18529437 -99333190 - AluY SINE Alu 0 311 1 19646 103 10 36 chr9 18529437 18534214 -99328413 - L1PA7 LINE L1 -701 5453 937 5642 61 1 0 chr9 18534214 18534901 -99327726 + LTR12 LTR ERV1 1 688 0 19646 103 10 36 chr9 18534901 18535808 -99326819 - L1PA7 LINE L1 -5217 937 8 362 214 0 12 chr9 18535813 18535897 -99326730 + MER82 DNA MER2_type 561 643 -10 372 238 176 42 chr9 18535898 18536302 -99326325 - L1MC5 LINE L1 -240 7721 7264 670 120 0 128 chr9 18536303 18536436 -99326191 - Tigger1 DNA MER2_type -1 2417 2302 1166 204 4 0 chr9 18537100 18537326 -99325301 + MLT2B1 LTR ERVL 1 227 -293 2285 139 34 5 chr9 18537363 18537751 -99324876 + Tigger4(Zombi) DNA MER2_type 2333 2731 0 1328 212 70 0 chr9 18537755 18538099 -99324528 - L1M4 LINE L1 -2229 3917 3550 468 0 0 0 chr9 18538742 18538794 -99323833 + (CA)n Simple_repeat Simple_repeat 2 53 0 987 152 81 30 chr9 18538919 18539117 -99323510 - MER2 DNA MER2_type -134 211 4 215 245 0 0 chr9 18539122 18539171 -99323456 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 921 256 156 22 chr9 18539789 18540160 -99322467 + MER39 LTR ERV1 262 682 -25 1109 217 38 0 chr9 18540184 18540419 -99322208 - L1ME4a LINE L1 -509 5911 5668 1251 131 54 31 chr9 18540419 18540641 -99321986 - AluSg/x SINE Alu -8 304 78 3921 235 38 9 chr9 18540641 18541912 -99320715 - L1ME4a LINE L1 -744 5676 4314 * 13530 186 48 15 chr9 18541908 18542236 -99320391 - L1 LINE L1 -757 6808 6492 2467 72 0 0 chr9 18542236 18542543 -99320084 - AluY SINE Alu -4 307 1 13530 186 48 15 chr9 18542543 18543690 -99318937 - L1 LINE L1 -1073 6492 5384 2137 118 7 10 chr9 18543690 18543996 -99318631 - AluSx SINE Alu -7 305 1 13530 186 48 15 chr9 18543996 18545592 -99317035 - L1 LINE L1 -2181 5384 3842 1877 168 0 19 chr9 18545592 18545901 -99316726 - AluJo SINE Alu -7 305 3 13530 186 48 15 chr9 18545901 18549116 -99313511 - L1 LINE L1 -3723 3842 4 489 201 12 104 chr9 18549121 18549205 -99313422 - L1 LINE L1 -2191 3955 3892 1465 209 29 10 chr9 18549205 18549511 -99313116 - AluJb SINE Alu 0 312 1 489 201 12 104 chr9 18549511 18549590 -99313037 - L1 LINE L1 -2254 3892 3807 342 233 0 11 chr9 18549603 18549693 -99312934 - L1 LINE L1 -2476 3670 3582 3450 227 102 11 chr9 18549808 18551004 -99311623 - L1ME4a LINE L1 -4075 3492 2188 * 6553 187 26 32 chr9 18550982 18553520 -99309107 - L1MA4A LINE L1 0 7722 5214 4987 230 110 21 chr9 18553534 18555485 -99307142 - L1M4 LINE L1 -743 5403 3288 3104 135 29 22 chr9 18555468 18556016 -99306611 - L1PA16 LINE L1 -263 5903 5352 * 1092 161 70 23 chr9 18556022 18556428 -99306199 - LTR54 LTR ERV1 -25 485 1 22440 28 2 0 chr9 18556428 18559906 -99302721 - L1PA3 LINE L1 0 6155 2674 6130 199 24 40 chr9 18559906 18561189 -99301438 - L1PA16 LINE L1 -783 5363 4107 6398 82 13 8 chr9 18561189 18562207 -99300420 + L1PA8 LINE L1 5145 6172 0 6130 199 24 40 chr9 18562207 18562445 -99300182 - L1PA16 LINE L1 -2039 4107 3867 43509 42 2 1 chr9 18562497 18568634 -99293993 - L1PA4 LINE L1 -3 6152 7 1665 234 48 24 chr9 18568639 18569263 -99293364 - L1M4 LINE L1 -2914 3232 2594 440 180 34 11 chr9 18569263 18569352 -99293275 - Tigger1 DNA MER2_type -26 2392 2302 600 281 172 38 chr9 18569357 18570072 -99292555 - L1M4 LINE L1 -1713 4433 3623 23 0 0 0 chr9 18572450 18572473 -99290154 + AT_rich Low_complexity Low_complexity 1 23 0 670 210 48 36 chr9 18572778 18572823 -99289804 - MER5A DNA MER1_type -2 187 144 1219 218 121 18 chr9 18572823 18573162 -99289465 - MLT1A2 LTR MaLR 0 374 1 670 210 48 36 chr9 18573162 18573283 -99289344 - MER5A DNA MER1_type -45 144 19 3185 108 2 55 chr9 18573525 18574055 -99288572 - L1PA12 LINE L1 -16 6152 5651 23 0 0 0 chr9 18574488 18574511 -99288116 + AT_rich Low_complexity Low_complexity 1 23 0 2892 294 74 25 chr9 18574653 18575435 -99287192 + L2 LINE L2 1107 1956 -1358 2138 102 8 54 chr9 18575435 18575807 -99286820 + THE1A LTR MaLR 1 355 0 2892 294 74 25 chr9 18575807 18576076 -99286551 + L2 LINE L2 1956 2210 -1104 613 184 10 0 chr9 18576081 18576184 -99286443 - Tigger7 DNA MER2_type -1 2586 2483 1164 224 9 9 chr9 18576186 18576418 -99286209 - Tigger7 DNA MER2_type -471 234 3 1700 282 108 36 chr9 18576426 18577444 -99285183 + L2 LINE L2 2226 3311 -2 367 317 52 23 chr9 18577505 18577811 -99284816 - L1MEd LINE L1 -4909 1507 1193 25 31 0 0 chr9 18579400 18579432 -99283195 + AT_rich Low_complexity Low_complexity 1 32 0 734 177 146 66 chr9 18579792 18580018 -99282609 - MSTA LTR MaLR 0 428 185 610 40 0 0 chr9 18580045 18580120 -99282507 - L1PA6 LINE L1 -7 6147 6073 516 86 0 0 chr9 18580120 18580190 -99282437 + L1P2 LINE L1 5577 5646 -509 905 179 106 0 chr9 18580190 18580369 -99282258 - MSTA LTR MaLR -230 198 1 309 374 45 30 chr9 18581864 18582129 -99280498 - L2 LINE L2 -850 2464 2196 1964 164 29 11 chr9 18582495 18582843 -99279784 - MLT2D LTR ERVL -55 359 6 374 211 193 0 chr9 18582845 18582959 -99279668 - L1MEd LINE L1 -5124 783 648 926 211 79 94 chr9 18583019 18583361 -99279266 - MER57A LTR ERV1 -4 399 63 1626 206 11 65 chr9 18583422 18583855 -99278772 - L1MEd LINE L1 -5657 769 360 1633 218 3 12 chr9 18583902 18584241 -99278386 - L1MEd LINE L1 -6071 355 20 2738 13 0 0 chr9 18586458 18586760 -99275867 - AluYa5 SINE Alu -9 302 1 5580 101 121 92 chr9 18586775 18588272 -99274355 + pTR5 LTR ERV1 743 2438 0 5776 245 60 19 chr9 18588275 18588301 -99274326 + L1M4 LINE L1 3063 3086 -3085 2473 68 0 0 chr9 18588301 18588595 -99274032 - AluY SINE Alu -17 294 1 5776 245 60 19 chr9 18588595 18590844 -99271783 + L1M4 LINE L1 3086 5428 -743 8708 226 84 20 chr9 18591074 18592099 -99270528 - L1MDa LINE L1 -3125 3415 2457 297 0 0 0 chr9 18592099 18592132 -99270495 + (TTATA)n Simple_repeat Simple_repeat 5 37 0 8708 226 84 20 chr9 18592132 18594297 -99268330 - L1MDa LINE L1 -4083 2457 20 192 314 100 0 chr9 18597264 18597334 -99265293 + L2 LINE L2 2905 2981 -291 333 47 0 0 chr9 18597356 18597399 -99265228 + (TG)n Simple_repeat Simple_repeat 2 44 0 1722 173 4 0 chr9 18597399 18597671 -99264956 - AluJb SINE Alu -34 278 6 316 265 113 46 chr9 18598717 18598868 -99263759 + MIR SINE MIR 52 212 -50 225 252 69 30 chr9 18599227 18599358 -99263269 - L1ME LINE L1 -288 5833 5698 282 155 0 42 chr9 18599555 18599626 -99263001 + (TA)n Simple_repeat Simple_repeat 1 68 0 2377 258 58 60 chr9 18600183 18600642 -99261985 - L1MEc LINE L1 -5242 1154 695 2459 78 0 0 chr9 18600642 18600950 -99261677 - AluY SINE Alu -3 308 1 2377 258 58 60 chr9 18600950 18601054 -99261573 - L1MEc LINE L1 -5701 695 592 1998 110 10 17 chr9 18601054 18601353 -99261274 - AluSx SINE Alu -13 299 3 2377 258 58 60 chr9 18601353 18601902 -99260725 - L1MEc LINE L1 -5804 592 44 2240 233 94 0 chr9 18602522 18603055 -99259572 - MER119 DNA MER1_type 0 583 1 923 244 30 61 chr9 18603727 18603832 -99258795 - MIR SINE MIR -2 260 153 2303 100 0 0 chr9 18603832 18604132 -99258495 - AluSg SINE Alu -10 300 1 923 244 30 61 chr9 18604132 18604288 -99258339 - MIR SINE MIR -109 153 7 2263 125 14 3 chr9 18604438 18604789 -99257838 - THE1A LTR MaLR 0 355 1 11520 95 9 0 chr9 18604789 18606355 -99256272 - THE1A-int LTR MaLR 0 1580 1 2262 121 23 3 chr9 18606355 18606703 -99255924 - THE1A LTR MaLR 0 355 1 250 290 47 47 chr9 18607195 18607302 -99255325 - L2 LINE L2 -4 3268 3162 2083 139 0 0 chr9 18607610 18607919 -99254708 - AluSx SINE Alu -3 309 1 182 206 0 0 chr9 18607961 18607995 -99254632 + MIR SINE MIR 111 144 -64 64 35 0 0 chr9 18608226 18608311 -99254316 + AT_rich Low_complexity Low_complexity 1 85 0 2151 119 60 5 chr9 18608311 18608681 -99253946 - L1MA3 LINE L1 0 6305 5916 348 227 13 0 chr9 18608681 18608756 -99253871 + MIR SINE MIR 96 171 -91 342 141 0 76 chr9 18608858 18608950 -99253677 - L1PA10 LINE L1 0 6168 6084 5511 170 5 21 chr9 18608952 18610064 -99252563 - L1 LINE L1 -750 5396 4303 31892 112 23 45 chr9 18610068 18610661 -99251966 - L1PA7 LINE L1 -20 6134 5530 2307 114 0 0 chr9 18610661 18610968 -99251659 - AluY SINE Alu -4 307 1 31892 112 23 45 chr9 18610968 18615737 -99246890 - L1PA7 LINE L1 -624 5530 933 5642 61 1 0 chr9 18615737 18616424 -99246203 + LTR12 LTR ERV1 1 688 0 31892 112 23 45 chr9 18616424 18617331 -99245296 - L1PA7 LINE L1 -5221 933 8 362 214 0 12 chr9 18617336 18617420 -99245207 + MER82 DNA MER2_type 561 643 -10 372 238 176 42 chr9 18617421 18617825 -99244802 - L1MC5 LINE L1 -240 7721 7264 670 120 0 128 chr9 18617826 18617959 -99244668 - Tigger1 DNA MER2_type -1 2417 2302 1166 204 4 0 chr9 18618623 18618849 -99243778 + MLT2B1 LTR ERVL 1 227 -293 2285 139 34 5 chr9 18618886 18619274 -99243353 + Tigger4(Zombi) DNA MER2_type 2333 2731 0 3110 238 111 5 chr9 18619278 18620365 -99242262 - L1 LINE L1 -2229 3917 2715 1823 301 73 12 chr9 18620368 18620932 -99241695 - L1M4b LINE L1 -6066 793 196 292 184 150 54 chr9 18621032 18621179 -99241448 - L1MC/D LINE L1 -2328 5480 5320 2380 97 0 0 chr9 18622980 18623290 -99239337 - AluY SINE Alu -1 310 1 2333 141 0 19 chr9 18623806 18624176 -99238451 - THE1B LTR MaLR -1 363 1 228 298 221 23 chr9 18624394 18624525 -99238102 + L2 LINE L2 3115 3271 -1 1731 180 32 0 chr9 18624622 18624905 -99237722 + AluSx SINE Alu 1 292 -20 2085 133 0 0 chr9 18624906 18625207 -99237420 + AluSx SINE Alu 1 301 -11 1945 118 62 0 chr9 18625530 18625819 -99236808 - AluSx SINE Alu -5 307 1 2282 102 0 13 chr9 18625896 18626210 -99236417 - AluSg SINE Alu 0 310 1 3487 278 120 33 chr9 18626332 18628211 -99234416 + HAL1 LINE L1 1 2043 -464 425 221 0 21 chr9 18628778 18628873 -99233754 + HAL1 LINE L1 2032 2124 -383 1533 193 7 14 chr9 18630074 18630370 -99232257 - AluJo SINE Alu -18 294 1 4875 170 25 9 chr9 18630538 18631539 -99231088 - L1 LINE L1 -1055 6112 5096 1002 202 65 28 chr9 18631519 18631841 -99230786 - L1 LINE L1 -4647 2451 2118 * 2241 157 0 0 chr9 18631844 18632189 -99230438 + MER7A DNA MER2_type 4 346 0 961 280 43 62 chr9 18632189 18632771 -99229856 - L1 LINE L1 -5068 2100 1530 22 80 0 0 chr9 18634257 18634307 -99228320 + AT_rich Low_complexity Low_complexity 1 50 0 3212 166 35 20 chr9 18634835 18635486 -99227141 - L1MD1 LINE L1 0 6242 5582 2195 116 0 7 chr9 18635486 18635789 -99226838 + AluSx SINE Alu 1 301 -11 13383 142 22 45 chr9 18635909 18637199 -99225428 + L1P3 LINE L1 504 1821 -4640 2436 68 0 3 chr9 18637199 18637509 -99225118 + AluY SINE Alu 1 309 -2 13383 142 22 45 chr9 18637509 18639303 -99223324 + L1P3 LINE L1 1821 3546 -2915 40199 70 3 0 chr9 18639452 18645559 -99217068 + L1PA5 LINE L1 30 6154 0 8529 188 44 10 chr9 18645888 18647819 -99214808 + L1 LINE L1 2322 4317 -1829 2686 160 44 2 chr9 18647829 18648279 -99214348 + L1P3 LINE L1 11 479 -5982 3791 81 1 116 chr9 18648279 18648968 -99213659 - LTR66 LTR ERVL 0 610 1 1572 68 16 2 chr9 18648968 18649328 -99213299 - HERVL66 LTR ERVL 0 4329 3881 1807 169 0 3 chr9 18649361 18649651 -99212976 - HERVL66 LTR ERVL -977 3352 3064 520 120 0 0 chr9 18649645 18649720 -99212907 - HERVL66 LTR ERVL -1603 2726 2652 * 2764 86 8 0 chr9 18649702 18650074 -99212553 - HERVL66 LTR ERVL -2532 1797 1423 562 84 0 0 chr9 18650062 18650133 -99212494 - HERVL66 LTR ERVL -3199 1130 1060 * 1252 98 95 116 chr9 18650145 18650430 -99212197 + LTR66 LTR ERVL 332 610 0 594 347 39 26 chr9 18650607 18650915 -99211712 + L2 LINE L2 2343 2654 -660 488 139 9 35 chr9 18651057 18651172 -99211455 + CT-rich Low_complexity Low_complexity 3 114 0 1826 112 0 0 chr9 18651177 18651418 -99211209 - AluSc SINE Alu -68 241 1 207 328 0 0 chr9 18651924 18651985 -99210642 + CT-rich Low_complexity Low_complexity 2 62 0 32 0 0 0 chr9 18652161 18652193 -99210434 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr9 18652632 18652674 -99209953 + AT_rich Low_complexity Low_complexity 1 42 0 663 57 0 0 chr9 18653490 18653578 -99209049 + (TCTA)n Simple_repeat Simple_repeat 3 90 0 23 0 0 0 chr9 18653704 18653727 -99208900 + AT_rich Low_complexity Low_complexity 1 23 0 472 369 100 17 chr9 18654140 18654612 -99208015 - L3 LINE CR1 -1 1576 1066 1611 158 14 3 chr9 18654908 18655192 -99207435 + L1PA16 LINE L1 5871 6157 -9 1232 184 139 32 chr9 18655679 18655989 -99206638 + MER2 DNA MER2_type 1 343 -1 228 121 0 0 chr9 18656275 18656308 -99206319 + MER2 DNA MER2_type 1 33 -312 391 279 132 20 chr9 18656588 18656989 -99205638 + L1M4 LINE L1 4140 4585 -1561 782 281 31 8 chr9 18657005 18657314 -99205313 - LTR33 LTR ERVL -136 385 34 341 311 128 16 chr9 18657332 18657644 -99204983 - L1M4 LINE L1 -1447 4699 4353 587 271 134 40 chr9 18657775 18658396 -99204231 - HAL1b LINE L1 -31 1317 639 255 279 0 0 chr9 18658441 18658502 -99204125 + MLT1I LTR MaLR 73 133 -276 2277 152 40 24 chr9 18658811 18659232 -99203395 + MSTC LTR MaLR 1 428 0 330 188 62 62 chr9 18660085 18660165 -99202462 - L2 LINE L2 -43 3270 3191 24 0 0 0 chr9 18660337 18660361 -99202266 + AT_rich Low_complexity Low_complexity 1 24 0 10454 118 5 8 chr9 18660361 18661040 -99201587 - L1PA10 LINE L1 -6 6477 5797 2242 105 3 0 chr9 18661040 18661336 -99201291 - AluSc SINE Alu -12 297 1 10454 118 5 8 chr9 18661336 18663092 -99199535 - L1PA10 LINE L1 -686 5797 4048 1035 143 7 0 chr9 18663092 18663270 -99199357 - AluSq SINE Alu 0 306 128 4189 162 33 4 chr9 18663270 18664080 -99198547 - L1PA10 LINE L1 -2409 4052 3219 630 159 0 0 chr9 18664081 18664194 -99198433 - L1PA2 LINE L1 -1 6154 6042 1021 167 0 42 chr9 18664340 18664604 -99198023 - pTR5 LTR ERV1 -1439 999 747 1191 193 12 12 chr9 18664604 18664858 -99197769 - L1PA10 LINE L1 -5618 257 4 228 35 0 0 chr9 18665184 18665213 -99197414 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 378 0 0 0 chr9 18665212 18665254 -99197373 + (TG)n Simple_repeat Simple_repeat 2 43 0 1525 126 79 65 chr9 18665255 18665532 -99197095 - AluSx SINE Alu -31 281 1 1889 163 27 9 chr9 18666252 18666590 -99196037 - MER2 DNA MER2_type 0 344 1 2275 95 0 3 chr9 18668176 18668471 -99194156 + AluSc SINE Alu 1 294 -15 181 197 0 105 chr9 18668525 18668601 -99194026 - MIR SINE MIR -95 167 100 1412 291 223 41 chr9 18669035 18669276 -99193351 + L2 LINE L2 1986 2182 -1131 1230 136 38 34 chr9 18669276 18669511 -99193116 - MER46A DNA MER2_type 0 236 1 1412 291 223 41 chr9 18669511 18670140 -99192487 + L2 LINE L2 2182 3011 -302 232 259 17 0 chr9 18671004 18671062 -99191565 - L1ME4a LINE L1 -82 5973 5915 216 0 0 0 chr9 18671295 18671319 -99191308 + (CA)n Simple_repeat Simple_repeat 2 25 0 2052 125 7 7 chr9 18671388 18671685 -99190942 - AluSx SINE Alu -15 297 1 551 272 140 9 chr9 18672155 18672383 -99190244 - MIR SINE MIR 0 262 5 991 199 93 72 chr9 18673811 18674143 -99188484 - MER2 DNA MER2_type 0 345 7 910 204 93 75 chr9 18675434 18675767 -99186860 - MER2 DNA MER2_type 0 345 7 2129 113 7 0 chr9 18676956 18677256 -99185371 - AluSp SINE Alu -11 302 1 1973 129 0 3 chr9 18678080 18678366 -99184261 - AluJb SINE Alu -17 295 11 24 0 0 0 chr9 18678515 18678539 -99184088 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr9 18678779 18678821 -99183806 + (CA)n Simple_repeat Simple_repeat 1 42 0 38 51 0 0 chr9 18679637 18679696 -99182931 + AT_rich Low_complexity Low_complexity 1 59 0 213 65 0 0 chr9 18679778 18679809 -99182818 + (CA)n Simple_repeat Simple_repeat 2 32 0 232 316 26 15 chr9 18680445 18680535 -99182092 + MIR SINE MIR 57 151 -93 1062 277 93 45 chr9 18681117 18681827 -99180800 - L1ME4a LINE L1 -246 5850 5084 2280 108 0 0 chr9 18681827 18682123 -99180504 - AluSq SINE Alu -17 296 1 1062 277 93 45 chr9 18682123 18682220 -99180407 - L1ME4a LINE L1 -1012 5084 4993 822 181 54 66 chr9 18682276 18682326 -99180301 + L1M4 LINE L1 4591 4640 -1506 2160 102 7 3 chr9 18682326 18682629 -99179998 + AluSc SINE Alu 1 304 -5 822 181 54 66 chr9 18682629 18682837 -99179790 + L1M4 LINE L1 4640 4846 -1300 433 206 61 8 chr9 18682835 18682966 -99179661 - L1ME4a LINE L1 -1391 4689 4552 * 2032 225 68 38 chr9 18682970 18683138 -99179489 - L1ME LINE L1 -3205 2875 2714 332 22 22 0 chr9 18683138 18683183 -99179444 + (TA)n Simple_repeat Simple_repeat 1 46 0 2254 70 0 55 chr9 18683184 18683496 -99179131 - AluY SINE Alu -11 300 6 2032 225 68 38 chr9 18683496 18684228 -99178399 - L1ME LINE L1 -3365 2715 1993 306 333 63 43 chr9 18684245 18684596 -99178031 - L1ME LINE L1 -4817 1265 908 873 133 0 0 chr9 18684599 18684727 -99177900 - AluSx SINE Alu -16 296 169 654 117 0 0 chr9 18684738 18684832 -99177795 - AluSx SINE Alu -218 94 1 374 266 132 65 chr9 18684836 18685393 -99177234 - L1ME LINE L1 -5154 916 314 549 352 28 4 chr9 18685418 18685668 -99176959 - L1ME LINE L1 -5809 261 6 382 309 61 35 chr9 18685877 18686560 -99176067 - L1MEd LINE L1 -4613 1697 957 745 193 40 10 chr9 18686569 18686771 -99175856 - L1MCa LINE L1 -3450 2976 2769 1511 213 79 3 chr9 18686773 18687220 -99175407 - L1MCa LINE L1 -3507 2919 2440 515 165 0 0 chr9 18687222 18687301 -99175326 - Tigger5 DNA MER2_type -3 2320 2242 331 230 27 0 chr9 18687291 18687365 -99175262 + Tigger5 DNA MER2_type 2242 2317 -6 * 502 190 0 0 chr9 18687367 18687446 -99175181 - Tigger5 DNA MER2_type -2244 79 1 826 256 80 23 chr9 18687446 18687836 -99174791 - L1MCa LINE L1 -4009 2419 2008 332 340 9 0 chr9 18687836 18687942 -99174685 - L1MCa LINE L1 -4812 1614 1508 1317 273 90 65 chr9 18688229 18688814 -99173813 - L2 LINE L2 -8 3305 2694 2532 64 0 6 chr9 18688814 18689127 -99173500 - AluY SINE Alu 0 311 1 1317 273 90 65 chr9 18689127 18689439 -99173188 - L2 LINE L2 -619 2694 2391 375 73 0 0 chr9 18689623 18689678 -99172949 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 468 198 10 0 chr9 18690089 18690185 -99172442 - MER5A DNA MER1_type -83 106 10 726 276 43 14 chr9 18690326 18690536 -99172091 + MIR SINE MIR 5 220 -42 21 36 0 0 chr9 18691064 18691092 -99171535 + AT_rich Low_complexity Low_complexity 1 28 0 2043 124 0 0 chr9 18691290 18691600 -99171027 - AluSq SINE Alu 0 310 1 588 227 49 31 chr9 18691610 18691773 -99170854 - L1ME LINE L1 -439 5682 5517 23 0 0 0 chr9 18691790 18691813 -99170814 + AT_rich Low_complexity Low_complexity 1 23 0 355 280 72 16 chr9 18692159 18692284 -99170343 + L2 LINE L2 3136 3267 -5 435 83 0 0 chr9 18696200 18696260 -99166367 + (TG)n Simple_repeat Simple_repeat 2 61 0 964 81 188 7 chr9 18696423 18696572 -99166055 - AluY SINE Alu -135 176 1 2357 97 3 0 chr9 18696760 18697059 -99165568 + AluSq SINE Alu 1 300 -13 667 270 130 36 chr9 18697422 18697814 -99164813 + Charlie8 DNA MER1_type 86 514 -1903 21 36 0 0 chr9 18697966 18697994 -99164633 + AT_rich Low_complexity Low_complexity 1 28 0 22 94 0 0 chr9 18698255 18698319 -99164308 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr9 18700210 18700231 -99162396 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 18701574 18701603 -99161024 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 18701984 18702005 -99160622 + AT_rich Low_complexity Low_complexity 1 21 0 2104 137 0 0 chr9 18703149 18703448 -99159179 - AluSx SINE Alu -13 299 1 1079 177 87 159 chr9 18703478 18703509 -99159118 - MLT2B1 LTR ERVL -11 509 477 243 0 0 0 chr9 18703509 18703536 -99159091 + (CA)n Simple_repeat Simple_repeat 2 28 0 1079 177 87 159 chr9 18703536 18703656 -99158971 - MLT2B1 LTR ERVL -43 477 350 2130 145 45 0 chr9 18703656 18704014 -99158613 + L1PA16 LINE L1 5793 6166 0 1079 177 87 159 chr9 18704014 18704250 -99158377 - MLT2B1 LTR ERVL -170 350 149 2203 109 0 0 chr9 18704325 18704609 -99158018 + AluSc SINE Alu 1 284 -25 1629 162 55 14 chr9 18704745 18705035 -99157592 + AluSx SINE Alu 2 303 -9 512 134 0 41 chr9 18705795 18705892 -99156735 - L1PA12 LINE L1 0 6168 6076 290 98 0 0 chr9 18705892 18705933 -99156694 - L1PA7 LINE L1 -97 6057 6017 * 2939 55 10 0 chr9 18705929 18706503 -99156124 - L1P3 LINE L1 -526 5628 5049 190 175 0 159 chr9 18706655 18706718 -99155909 + L2 LINE L2 3210 3262 -10 21 0 0 0 chr9 18707014 18707035 -99155592 + AT_rich Low_complexity Low_complexity 1 21 0 288 77 0 0 chr9 18707198 18707237 -99155390 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 1792 149 6 40 chr9 18707240 18707561 -99155066 - AluSx SINE Alu -2 310 1 28 29 0 0 chr9 18707561 18707596 -99155031 + AT_rich Low_complexity Low_complexity 1 35 0 1671 173 43 13 chr9 18708961 18709261 -99153366 + AluJo SINE Alu 2 310 -2 1375 177 36 61 chr9 18712743 18713104 -99149523 - L1MB8 LINE L1 -2 6176 5825 259 286 133 9 chr9 18713571 18713676 -99148951 - L2 LINE L2 0 3313 3196 1545 224 100 13 chr9 18713862 18714322 -99148305 - L1ME1 LINE L1 -44 6516 6017 372 213 0 0 chr9 18714321 18714401 -99148226 - L1ME1 LINE L1 -930 5610 5531 * 1774 191 66 66 chr9 18714471 18715093 -99147534 - L1ME1 LINE L1 -4005 2535 1914 1445 136 60 121 chr9 18715096 18715564 -99147063 - THE1C LTR MaLR 0 375 1 2424 214 80 29 chr9 18715567 18716390 -99146237 - L1ME1 LINE L1 -4628 1912 1048 1090 124 14 77 chr9 18716398 18716480 -99146147 - Tigger5 DNA MER2_type 0 2323 2237 2249 102 6 22 chr9 18716480 18716793 -99145834 + AluSx SINE Alu 5 312 0 1090 124 14 77 chr9 18716793 18716919 -99145708 - Tigger5 DNA MER2_type -86 2237 2128 2146 102 3 3 chr9 18716933 18717218 -99145409 - AluSc SINE Alu -24 285 1 13940 116 14 62 chr9 18717218 18718975 -99143652 - L1P4 LINE L1 -685 5798 4067 1035 143 7 0 chr9 18718975 18719153 -99143474 - AluSq SINE Alu 0 306 128 13940 116 14 62 chr9 18719153 18719964 -99142663 - L1P4 LINE L1 -2416 4067 3218 * 42821 33 21 1 chr9 18719962 18725993 -99136634 - L1PA2 LINE L1 0 6155 2 9337 208 30 41 chr9 18725995 18728899 -99133728 - L1P4 LINE L1 -3228 3233 248 1568 73 23 9 chr9 18728900 18729118 -99133509 - pTR5 LTR ERV1 -2046 392 172 382 140 93 72 chr9 18729127 18729224 -99133403 - LTR30 LTR ERV1 -75 624 220 2453 113 24 21 chr9 18729224 18729736 -99132891 - pTR5 LTR ERV1 -418 2020 1195 3550 121 208 110 chr9 18729860 18731096 -99131531 + pTR5 LTR ERV1 892 2410 -28 424 261 20 78 chr9 18731096 18731249 -99131378 - AluSq/x SINE Alu -162 141 24 29 70 0 0 chr9 18731451 18731508 -99131119 + AT_rich Low_complexity Low_complexity 1 57 0 297 303 76 21 chr9 18732626 18732771 -99129856 - L2 LINE L2 -50 3263 3111 1243 195 39 3 chr9 18732956 18733238 -99129389 - L1MB4 LINE L1 -173 6007 5716 336 95 0 40 chr9 18733505 18733579 -99129048 + (TA)n Simple_repeat Simple_repeat 1 71 0 275 338 31 13 chr9 18734106 18734334 -99128293 + L1MC4a LINE L1 5683 5914 -1894 314 279 25 25 chr9 18734376 18734498 -99128129 + (CATATA)n Simple_repeat Simple_repeat 5 126 0 294 288 81 9 chr9 18734647 18734758 -99127869 + L1ME LINE L1 5628 5746 -424 929 228 6 148 chr9 18734822 18734979 -99127648 + L1M4 LINE L1 4969 5147 -999 1717 187 7 3 chr9 18734979 18735262 -99127365 - AluJb SINE Alu -25 287 4 929 228 6 148 chr9 18735262 18735546 -99127081 + L1M4 LINE L1 5147 5334 -812 2263 74 6 58 chr9 18735546 18735871 -99126756 + AluY SINE Alu 1 308 -3 929 228 6 148 chr9 18735871 18735928 -99126699 + L1M4 LINE L1 5334 5397 -749 1696 203 27 44 chr9 18735938 18736154 -99126473 - L1MEc LINE L1 -3054 3372 3154 2612 136 29 17 chr9 18736154 18736631 -99125996 - MER31A LTR ERV1 -2 483 1 1696 203 27 44 chr9 18736631 18736977 -99125650 - L1MEc LINE L1 -3272 3154 2820 1787 31 0 14 chr9 18737005 18737228 -99125399 - L1PA4 LINE L1 -1 6154 5935 752 302 42 52 chr9 18737302 18737805 -99124822 - L1MEc LINE L1 -5792 604 107 200 189 0 0 chr9 18738277 18738314 -99124313 + (TG)n Simple_repeat Simple_repeat 2 38 0 5622 58 22 0 chr9 18738688 18739401 -99123226 - L1PA7 LINE L1 -3 6151 5423 214 177 0 48 chr9 18739446 18739508 -99123119 + T-rich Low_complexity Low_complexity 2 60 0 383 301 89 65 chr9 18739889 18740304 -99122323 - L1MEc LINE L1 -4857 1569 1145 270 198 70 0 chr9 18740306 18740392 -99122235 - L1MEc LINE L1 -5158 1271 1180 1956 149 131 13 chr9 18741025 18741408 -99121219 + MSTA LTR MaLR 1 428 0 1569 186 52 0 chr9 18741627 18741896 -99120731 + AluJb SINE Alu 4 286 -26 23 33 0 0 chr9 18741916 18741946 -99120681 + AT_rich Low_complexity Low_complexity 1 30 0 1386 210 0 57 chr9 18742076 18742390 -99120237 - AluJo SINE Alu -16 296 1 26 74 0 0 chr9 18742470 18742524 -99120103 + AT_rich Low_complexity Low_complexity 1 54 0 20563 166 32 22 chr9 18742885 18744963 -99117664 + L1MA3 LINE L1 24 2080 -5644 2100 139 27 27 chr9 18744963 18745338 -99117289 + THE1C LTR MaLR 1 375 0 20563 166 32 22 chr9 18745338 18745654 -99116973 + L1MA3 LINE L1 2080 2391 -5333 2143 124 3 0 chr9 18745654 18745952 -99116675 + AluSx SINE Alu 4 302 -10 20563 166 32 22 chr9 18745952 18750525 -99112102 + L1MA3 LINE L1 2391 7075 -649 1948 134 10 10 chr9 18750525 18750823 -99111804 + AluSx SINE Alu 1 298 -14 20563 166 32 22 chr9 18750823 18751469 -99111158 + L1MA3 LINE L1 7075 7713 -11 237 237 34 34 chr9 18751662 18751721 -99110906 - L3 LINE CR1 -2 1575 1517 406 316 89 32 chr9 18752272 18752381 -99110246 - HAL1b LINE L1 -33 1315 1214 2451 63 0 16 chr9 18752381 18752697 -99109930 - AluY SINE Alu 0 311 1 406 316 89 32 chr9 18752697 18752900 -99109727 - HAL1b LINE L1 -134 1214 985 773 269 69 98 chr9 18752921 18753215 -99109412 - HAL1b LINE L1 -456 892 591 1858 114 16 70 chr9 18753215 18753530 -99109097 + AluSx SINE Alu 6 303 -9 773 269 69 98 chr9 18753530 18754081 -99108546 - HAL1b LINE L1 -757 591 72 2117 128 0 3 chr9 18754127 18754425 -99108202 - AluSc SINE Alu -12 297 1 1049 239 33 19 chr9 18754790 18755122 -99107505 - L1MEc LINE L1 -833 1954 1704 * 1617 251 35 51 chr9 18755113 18755624 -99107003 - L1MEc LINE L1 -5834 773 271 196 284 52 84 chr9 18755665 18755820 -99106807 + L2 LINE L2 2252 2401 -913 2644 215 43 45 chr9 18755917 18756606 -99106021 - MER76 LTR ERV 0 688 1 295 244 24 37 chr9 18756888 18756970 -99105657 - MLT1H LTR MaLR -330 219 139 243 229 12 24 chr9 18757502 18757585 -99105042 - MLT1I-int LTR MaLR -1653 82 1 317 219 14 0 chr9 18757596 18757669 -99104958 - MLT1I LTR MaLR -20 389 316 321 296 111 40 chr9 18757756 18757955 -99104672 - MLT1I LTR MaLR -123 286 74 283 222 40 10 chr9 18759045 18759144 -99103483 + (TA)n Simple_repeat Simple_repeat 2 103 0 1507 178 59 0 chr9 18759199 18759469 -99103158 + AluJb SINE Alu 6 291 -21 31 0 0 0 chr9 18759473 18759504 -99103123 + AT_rich Low_complexity Low_complexity 1 31 0 2403 71 0 3 chr9 18759590 18759884 -99102743 - AluY SINE Alu -18 293 1 2284 256 59 70 chr9 18760741 18761543 -99101084 - MER21B LTR ERV1 -51 812 20 1730 126 78 3 chr9 18761543 18761836 -99100791 - MER2 DNA MER2_type 0 345 31 28 79 0 0 chr9 18764780 18764843 -99097784 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr9 18765002 18765025 -99097602 + AT_rich Low_complexity Low_complexity 1 23 0 2538 128 0 20 chr9 18765728 18766126 -99096501 + MLT1B LTR MaLR 1 390 0 2111 123 3 16 chr9 18766182 18766490 -99096137 - AluSx SINE Alu -8 304 1 21 0 0 0 chr9 18766769 18766790 -99095837 + AT_rich Low_complexity Low_complexity 1 21 0 2111 176 100 26 chr9 18766872 18767486 -99095141 - MER39 LTR ERV1 0 707 2 21 89 0 0 chr9 18767573 18767629 -99094998 + AT_rich Low_complexity Low_complexity 1 56 0 183 184 0 0 chr9 18767715 18767753 -99094874 + (TAA)n Simple_repeat Simple_repeat 2 39 0 384 248 141 34 chr9 18767794 18767943 -99094684 - MIR SINE MIR -72 190 26 1067 216 15 0 chr9 18768014 18768218 -99094409 + AluJb SINE Alu 83 289 -23 1603 180 68 3 chr9 18768923 18769262 -99093365 - MLT1A1 LTR MaLR 0 365 5 4248 78 2 0 chr9 18771756 18772309 -99090318 + MER41A LTR ERV1 1 554 0 806 229 6 0 chr9 18772575 18772750 -99089877 + MER5B DNA MER1_type 3 178 0 3872 101 4 7 chr9 18773128 18773684 -99088943 - MER41A LTR ERV1 0 554 1 22 35 0 0 chr9 18773973 18774002 -99088625 + AT_rich Low_complexity Low_complexity 1 29 0 621 183 86 34 chr9 18774177 18774352 -99088275 - LTR45B LTR ERV1 0 489 306 2178 166 73 58 chr9 18774727 18775274 -99087353 + MER34B LTR ERV1 11 565 0 1011 236 101 42 chr9 18775610 18776069 -99086558 + MER34 LTR ERV1 1 707 0 2185 110 0 3 chr9 18776083 18776383 -99086244 - AluSg SINE Alu -11 299 1 778 295 70 4 chr9 18776401 18776645 -99085982 + MIR SINE MIR 3 262 0 1502 203 7 14 chr9 18777323 18777619 -99085008 - AluJo SINE Alu -18 294 1 229 281 55 0 chr9 18777788 18777934 -99084693 + L1M4 LINE L1 5175 5328 -818 982 262 70 61 chr9 18778483 18778910 -99083717 + MLT2B1 LTR ERVL 90 520 0 767 281 42 121 chr9 18779140 18779620 -99083007 + ERVL LTR ERVL 4078 4519 -1245 2060 148 0 0 chr9 18779725 18780022 -99082605 - AluSx SINE Alu -15 297 1 590 344 56 5 chr9 18780033 18780523 -99082104 + ERVL LTR ERVL 4536 5074 -690 667 291 184 14 chr9 18780570 18780685 -99081942 + L2 LINE L2 1730 1824 -1490 2223 114 0 0 chr9 18780685 18780984 -99081643 - AluSx SINE Alu -13 299 1 667 291 184 14 chr9 18780984 18781226 -99081401 + L2 LINE L2 1824 2148 -1166 1866 161 60 52 chr9 18781228 18781613 -99081014 - MSTD LTR MaLR 0 396 9 219 313 27 36 chr9 18781614 18781726 -99080901 + L2 LINE L2 2165 2275 -1039 1304 113 72 0 chr9 18781740 18781935 -99080692 - AluSp SINE Alu -18 295 87 959 308 90 13 chr9 18781935 18782312 -99080315 + L2 LINE L2 2266 2671 -643 457 300 128 64 chr9 18782314 18782737 -99079890 + L2 LINE L2 2864 3313 0 278 351 130 33 chr9 18783043 18783342 -99079285 + L3 LINE CR1 64 391 -1186 460 313 150 55 chr9 18783370 18783790 -99078837 + L3 LINE CR1 676 1165 -412 2455 74 0 10 chr9 18783790 18784099 -99078528 + AluSx SINE Alu 1 306 -6 460 313 150 55 chr9 18784099 18784244 -99078383 + L3 LINE CR1 1165 1295 -282 419 246 67 101 chr9 18784250 18784466 -99078161 + L2 LINE L2 3055 3262 -51 2388 88 0 0 chr9 18784466 18784761 -99077866 + AluY SINE Alu 1 295 -16 419 246 67 101 chr9 18784761 18784812 -99077815 + L2 LINE L2 3262 3313 0 360 361 100 36 chr9 18784786 18785066 -99077561 + L3 LINE CR1 1279 1576 -1 * 694 299 94 20 chr9 18786138 18787012 -99075615 - L1ME LINE L1 -652 5518 4578 3704 230 73 47 chr9 18787013 18787462 -99075165 + L1MD2 LINE L1 95 531 -6009 1903 162 6 49 chr9 18787462 18787808 -99074819 + MER1B DNA MER1_type 3 333 -4 3704 230 73 47 chr9 18787808 18788376 -99074251 + L1MD2 LINE L1 531 1152 -5388 2024 133 35 41 chr9 18788376 18788744 -99073883 + MER47A DNA MER2_type 1 366 0 3704 230 73 47 chr9 18788744 18788939 -99073688 + L1MD2 LINE L1 1152 1340 -5200 231 220 20 0 chr9 18788975 18789025 -99073602 - LTR52 LTR ERVL -40 381 331 2223 217 77 10 chr9 18789038 18790005 -99072622 + L1MD2 LINE L1 5201 6236 -517 244 267 112 25 chr9 18790483 18790644 -99071983 + MARNA DNA Mariner 386 560 -26 1883 162 14 0 chr9 18790754 18791050 -99071577 + AluSx SINE Alu 1 300 -12 511 148 11 0 chr9 18791526 18791614 -99071013 - FLAM_C SINE Alu -18 125 37 205 130 0 56 chr9 18793217 18793271 -99069356 + (TTTTC)n Simple_repeat Simple_repeat 5 55 0 21 36 0 0 chr9 18794338 18794366 -99068261 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 18795207 18795230 -99067397 + AT_rich Low_complexity Low_complexity 1 23 0 1847 133 0 0 chr9 18795624 18795888 -99066739 - AluSx SINE Alu -14 298 35 9282 195 95 11 chr9 18795889 18799815 -99062812 - L1 LINE L1 -2611 4954 13 988 218 148 45 chr9 18800327 18800685 -99061942 + MSTD LTR MaLR 1 395 -1 1267 233 53 28 chr9 18800885 18801246 -99061381 + MLT1A2 LTR MaLR 1 370 -4 1729 207 115 28 chr9 18801248 18801819 -99060808 + MLT1A2-int LTR MaLR 1 738 -633 353 200 50 0 chr9 18801935 18802015 -99060612 + MLT1A2-int LTR MaLR 686 769 -966 204 204 37 0 chr9 18802226 18802280 -99060347 + (TA)n Simple_repeat Simple_repeat 1 56 0 386 278 70 70 chr9 18802580 18802807 -99059820 - L1MEd LINE L1 -5555 564 338 464 333 90 27 chr9 18803566 18803866 -99058761 - L2 LINE L2 0 3313 2995 573 208 32 8 chr9 18804021 18804146 -99058481 - MIR SINE MIR -3 259 132 203 381 92 12 chr9 18804308 18804481 -99058146 - MIR SINE MIR -70 192 6 36 23 0 0 chr9 18804611 18804654 -99057973 + AT_rich Low_complexity Low_complexity 1 43 0 299 340 43 14 chr9 18805333 18805474 -99057153 - MIR SINE MIR -109 153 9 29 28 0 0 chr9 18805538 18805574 -99057053 + AT_rich Low_complexity Low_complexity 1 36 0 5683 157 22 8 chr9 18806124 18807420 -99055207 - L1MA4 LINE L1 -9 6291 4982 247 219 106 98 chr9 18808025 18808290 -99054337 + L1MEd LINE L1 895 1161 -4958 313 268 41 24 chr9 18808304 18808427 -99054200 + HAL1 LINE L1 1483 1607 -900 2276 112 0 3 chr9 18808445 18808750 -99053877 + AluSx SINE Alu 1 304 -8 238 315 0 0 chr9 18809245 18809337 -99053290 + A-rich Low_complexity Low_complexity 1 92 0 2326 82 0 3 chr9 18809421 18809712 -99052915 - AluSx SINE Alu -22 290 1 634 149 0 0 chr9 18809743 18809850 -99052777 - AluJo SINE Alu -1 311 205 * 805 214 13 19 chr9 18809848 18810007 -99052620 - AluJo SINE Alu -154 158 1 406 282 29 17 chr9 18810009 18810183 -99052444 - L1MDa LINE L1 -2185 4355 4180 * 1541 248 75 11 chr9 18810176 18810838 -99051789 - L1MDa LINE L1 -2792 3748 3044 602 204 125 79 chr9 18810913 18811129 -99051498 - L1MDa LINE L1 -4618 1922 1697 2102 130 0 7 chr9 18811688 18811989 -99050638 - AluSq SINE Alu -14 299 1 232 266 16 0 chr9 18813923 18813987 -99048640 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 691 271 6 12 chr9 18814182 18814352 -99048275 + MER5B DNA MER1_type 3 171 -7 303 305 80 53 chr9 18814607 18814758 -99047869 + L1MEd LINE L1 3 157 -5962 1271 241 75 0 chr9 18814799 18815119 -99047508 - L2 LINE L2 -1001 2313 1970 185 198 9 135 chr9 18815155 18815266 -99047361 - L2 LINE L2 -1466 1848 1752 2772 229 53 22 chr9 18815435 18815788 -99046839 + L1MB8 LINE L1 2731 3072 -3106 1163 218 145 15 chr9 18815788 18816119 -99046508 + MLT1A2 LTR MaLR 1 374 0 2772 229 53 22 chr9 18816119 18816418 -99046209 + L1MB8 LINE L1 3072 3360 -2818 2266 67 0 51 chr9 18816418 18816732 -99045895 + AluY SINE Alu 1 298 -13 2772 229 53 22 chr9 18816732 18817168 -99045459 + L1MB8 LINE L1 3360 6112 -66 2705 240 72 22 chr9 18817199 18818530 -99044097 + L1MB5 LINE L1 2848 4294 -3271 2134 122 3 3 chr9 18818530 18818825 -99043802 - AluSx SINE Alu -17 295 1 2705 240 72 22 chr9 18818825 18818966 -99043661 + L1MB5 LINE L1 4294 4426 -3139 410 79 79 0 chr9 18818966 18819029 -99043598 + L1MB1 LINE L1 6101 6168 0 698 279 52 84 chr9 18819033 18819531 -99043096 + L1MB5 LINE L1 5333 5814 -1751 201 313 44 50 chr9 18819952 18820134 -99042493 - L2 LINE L2 -1217 2097 1917 249 227 15 0 chr9 18820146 18820212 -99042415 - MLT1K LTR MaLR 0 588 522 576 266 107 33 chr9 18820451 18820722 -99041905 - MER20B DNA MER1_type -492 291 1 8155 56 1 0 chr9 18821486 18822451 -99040176 + LTR5 LTR ERVK 1 966 -3 497 233 123 0 chr9 18824204 18824367 -99038260 + L1MB5 LINE L1 6516 6698 -867 958 124 0 28 chr9 18824369 18824514 -99038113 + AluSx SINE Alu 1 141 -172 4222 126 181 102 chr9 18824517 18825940 -99036687 - pTR5 LTR ERV1 0 2438 743 1074 127 0 18 chr9 18825940 18826106 -99036521 + AluSx SINE Alu 147 309 -3 1110 175 40 58 chr9 18826112 18826437 -99036190 + L1MB5 LINE L1 6708 7026 -567 816 172 0 0 chr9 18826438 18826572 -99036055 + AluJo SINE Alu 1 134 -178 2907 170 11 17 chr9 18826572 18827114 -99035513 + L1MB5 LINE L1 7013 7551 -42 252 0 0 0 chr9 18827276 18827304 -99035323 + (TA)n Simple_repeat Simple_repeat 2 29 0 1245 340 63 18 chr9 18827849 18828625 -99034002 - L2 LINE L2 -541 2773 1963 1021 238 103 7 chr9 18828845 18829126 -99033501 + MLT1A1 LTR MaLR 41 348 -17 201 133 0 0 chr9 18829864 18829894 -99032733 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 21 95 0 0 chr9 18829955 18830018 -99032609 + AT_rich Low_complexity Low_complexity 1 63 0 1212 251 29 47 chr9 18830413 18830799 -99031828 + L1MDa LINE L1 3 381 -6159 2102 122 3 0 chr9 18830864 18831159 -99031468 + AluSx SINE Alu 1 296 -16 1838 168 0 3 chr9 18831470 18831762 -99030865 + AluJo SINE Alu 1 291 -21 1487 236 141 34 chr9 18831964 18832553 -99030074 - MLT1E1 LTR MaLR -2 652 1 24 0 0 0 chr9 18832653 18832677 -99029950 + AT_rich Low_complexity Low_complexity 1 24 0 273 299 198 17 chr9 18833099 18833276 -99029351 - MIR SINE MIR -18 244 36 256 355 150 0 chr9 18834349 18834569 -99028058 - L2 LINE L2 -508 2806 2554 36 53 0 0 chr9 18835929 18835986 -99026641 + AT_rich Low_complexity Low_complexity 1 57 0 1448 54 0 0 chr9 18838099 18838284 -99024343 - L1PA3 LINE L1 -102 6053 5869 877 37 0 0 chr9 18838284 18838387 -99024240 + L1PA2 LINE L1 6049 6155 0 2170 155 10 30 chr9 18842690 18843083 -99019544 - MLT1B LTR MaLR -5 385 1 666 230 15 7 chr9 18843274 18843409 -99019218 - MIR SINE MIR -123 139 4 181 313 20 81 chr9 18843573 18843672 -99018955 + MIR SINE MIR 25 117 -91 221 175 25 50 chr9 18844233 18844313 -99018314 + (TATAA)n Simple_repeat Simple_repeat 1 78 0 205 379 73 24 chr9 18844875 18845075 -99017552 - MIR SINE MIR -57 205 2 677 248 140 84 chr9 18845199 18845650 -99016977 - MLT1H LTR MaLR -2 547 72 26 30 0 0 chr9 18845896 18845929 -99016698 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr9 18846008 18846036 -99016591 + AT_rich Low_complexity Low_complexity 1 28 0 526 263 25 38 chr9 18846884 18847044 -99015583 + MIR SINE MIR 104 261 -1 225 94 0 0 chr9 18847056 18847088 -99015539 + (CAG)n Simple_repeat Simple_repeat 2 33 0 21 71 0 0 chr9 18847373 18847415 -99015212 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr9 18848646 18848689 -99013938 + AT_rich Low_complexity Low_complexity 1 43 0 4177 119 5 0 chr9 18850900 18851524 -99011103 + L1PA15 LINE L1 5527 6153 -12 192 403 89 8 chr9 18902380 18902504 -98960123 + L3b LINE CR1 1374 1507 -76 23 33 0 0 chr9 18904892 18904922 -98957705 + AT_rich Low_complexity Low_complexity 1 30 0 397 289 198 17 chr9 18908333 18908682 -98953945 + L2 LINE L2 2807 3218 -95 2836 198 69 19 chr9 18908682 18909360 -98953267 + Cheshire DNA MER1_type 1 712 -1708 2138 205 36 26 chr9 18909413 18909911 -98952716 + MLT1D LTR MaLR 1 503 -2 268 211 0 0 chr9 18909912 18909969 -98952658 - L1M4 LINE L1 -2389 3757 3701 2964 247 95 24 chr9 18909993 18911352 -98951275 + L1M4 LINE L1 3844 5298 -848 767 161 39 0 chr9 18911796 18911951 -98950676 - L1MA6 LINE L1 -4 6296 6136 2837 192 9 4 chr9 18911953 18912505 -98950122 - L1PA16 LINE L1 -16 6150 5596 1783 240 64 30 chr9 18913187 18913779 -98948848 - L1MD2 LINE L1 -2 6357 5746 8821 144 16 21 chr9 18913798 18915328 -98947299 + ERVL LTR ERVL 3905 5426 -338 1884 188 53 5 chr9 18915357 18915750 -98946877 + MLT2D LTR ERVL 3 414 0 1194 241 21 10 chr9 18915750 18916041 -98946586 - L1MD2 LINE L1 -626 5733 5440 676 214 204 67 chr9 18916278 18916577 -98946050 - MLT1E LTR MaLR -8 585 246 342 98 0 0 chr9 18916601 18916652 -98945975 + (CA)n Simple_repeat Simple_repeat 1 51 0 324 267 0 0 chr9 18916654 18916729 -98945898 - MLT1E LTR MaLR -467 75 1 1466 156 103 6 chr9 18917289 18917609 -98945018 + L1PA16 LINE L1 5811 6161 -5 2239 76 20 10 chr9 18917764 18918065 -98944562 - AluY SINE Alu -7 304 1 473 292 129 45 chr9 18918140 18918367 -98944260 + L1M4 LINE L1 2866 3072 -3074 1854 160 0 25 chr9 18918367 18918686 -98943941 + AluJb SINE Alu 2 312 0 473 292 129 45 chr9 18918686 18918862 -98943765 + L1M4 LINE L1 3072 3303 -2843 459 333 78 48 chr9 18918905 18918978 -98943649 + L1M4 LINE L1 3382 3451 -2695 1776 183 0 7 chr9 18918978 18919278 -98943349 + AluJo SINE Alu 1 298 -14 459 333 78 48 chr9 18919278 18919625 -98943002 + L1M4 LINE L1 3451 3815 -2331 307 308 34 8 chr9 18919868 18919985 -98942642 + MLT1J LTR MaLR 305 424 -87 2784 286 89 7 chr9 18920047 18921193 -98941434 + L2 LINE L2 1896 3129 -184 1621 224 43 18 chr9 18921258 18921695 -98940932 - MER39 LTR ERV1 0 707 260 305 160 26 24 chr9 18921683 18921772 -98940855 - MER39 LTR ERV1 -557 87 1 * 387 235 0 59 chr9 18921791 18921893 -98940734 + L2 LINE L2 3218 3313 0 1160 220 33 84 chr9 18921988 18922062 -98940565 + MLT1C LTR MaLR 6 82 -385 2369 64 6 19 chr9 18922062 18922376 -98940251 + AluY SINE Alu 1 310 -1 1160 220 33 84 chr9 18922376 18922788 -98939839 + MLT1C LTR MaLR 82 467 0 763 133 21 183 chr9 18922873 18922983 -98939644 - MER106A DNA MER1_type -2 234 194 2330 104 0 19 chr9 18922983 18923299 -98939328 - AluSg SINE Alu 0 310 1 763 133 21 183 chr9 18923299 18923467 -98939160 - MER106A DNA MER1_type -42 194 1 734 252 67 52 chr9 18923555 18923884 -98938743 + MLT1I LTR MaLR 28 361 -48 1456 158 91 8 chr9 18923893 18924038 -98938589 - AluJb SINE Alu -25 287 155 198 0 0 0 chr9 18924038 18924060 -98938567 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1456 158 91 8 chr9 18924060 18924179 -98938448 - AluJb SINE Alu -157 155 1 348 259 29 41 chr9 18925208 18925378 -98937249 - MLT2E LTR ERVL -14 614 447 384 77 0 0 chr9 18926196 18926248 -98936379 + (GA)n Simple_repeat Simple_repeat 2 53 0 416 250 79 29 chr9 18927050 18927190 -98935437 + MIR SINE MIR 110 256 -6 241 301 159 0 chr9 18927295 18927408 -98935219 - MIR SINE MIR -130 132 2 2078 119 3 3 chr9 18928195 18928489 -98934138 - AluSx SINE Alu -18 294 1 230 204 0 0 chr9 18929069 18929113 -98933514 - MLT2B1 LTR ERVL -4 410 367 1039 231 61 48 chr9 18929170 18929569 -98933058 - MLT2B1 LTR ERVL -58 406 1 917 183 122 5 chr9 18929801 18930014 -98932613 + MER90 LTR ERV1 3 240 -374 340 182 0 15 chr9 18930104 18930170 -98932457 + MER90 LTR ERV1 233 297 -317 2573 68 0 0 chr9 18930878 18931187 -98931440 - AluY SINE Alu -2 309 1 283 93 0 0 chr9 18931803 18931846 -98930781 - Alu SINE Alu -10 290 248 2040 114 7 17 chr9 18931846 18932135 -98930492 - AluSx SINE Alu -26 286 1 4350 175 31 48 chr9 18932380 18933619 -98929008 + L1MC3 LINE L1 6336 7655 -130 466 207 300 0 chr9 18933634 18933784 -98928843 + MER90 LTR ERV1 405 599 -15 2410 84 0 54 chr9 18934353 18934723 -98927904 - L1PA8 LINE L1 0 6172 5823 482 229 207 43 chr9 18935017 18935205 -98927422 + MIR SINE MIR 2 220 -42 208 343 38 48 chr9 18935350 18935455 -98927172 + MIR SINE MIR 34 137 -71 2141 108 0 7 chr9 18935728 18936024 -98926603 - AluSg SINE Alu -16 294 1 27 62 0 0 chr9 18936829 18936877 -98925750 + AT_rich Low_complexity Low_complexity 1 48 0 1633 113 4 4 chr9 18937127 18937358 -98925269 - AluSg/x SINE Alu -1 309 79 613 306 44 6 chr9 18938023 18938203 -98924424 - MIR SINE MIR -68 194 8 189 0 0 0 chr9 18938433 18938454 -98924173 + (A)n Simple_repeat Simple_repeat 1 21 0 370 312 196 0 chr9 18938872 18939061 -98923566 - MIR SINE MIR -28 234 9 338 347 42 19 chr9 18939713 18939872 -98922755 + MIR SINE MIR 16 174 -73 253 316 61 9 chr9 18939996 18940110 -98922517 + L2 LINE L2 3153 3272 0 3107 160 12 60 chr9 18940845 18941490 -98921137 - L1MB8 LINE L1 -11 6167 5554 238 375 55 0 chr9 18942462 18942590 -98920037 - MIR3 SINE MIR -71 137 3 295 372 67 6 chr9 18942757 18942937 -98919690 - MER91A DNA MER1_type -3 193 3 229 209 0 0 chr9 18943117 18943160 -98919467 + (CA)n Simple_repeat Simple_repeat 1 43 0 434 250 64 76 chr9 18943325 18943497 -98919130 - MER5B DNA MER1_type -1 177 8 1581 163 101 91 chr9 18943721 18943941 -98918686 - MLT1B LTR MaLR 0 390 163 2001 156 7 0 chr9 18943941 18944249 -98918378 - AluSx SINE Alu -2 310 1 1581 163 101 91 chr9 18944249 18944414 -98918213 - MLT1B LTR MaLR -227 163 1 43521 35 23 1 chr9 18944514 18950533 -98912094 + L1PA3 LINE L1 3 6153 -2 694 220 19 125 chr9 18951075 18951263 -98911364 + MIR SINE MIR 27 181 -81 14106 124 13 6 chr9 18951263 18954094 -98908533 + L1PA10 LINE L1 3322 6157 -11 694 220 19 125 chr9 18954094 18954169 -98908458 + MIR SINE MIR 181 262 0 321 252 187 19 chr9 18954600 18954707 -98907920 - L2 LINE L2 -2 3270 3146 1975 194 19 6 chr9 18955010 18955370 -98907257 - MLT1A1 LTR MaLR 0 365 1 2337 147 124 15 chr9 18955442 18955844 -98906783 + MLT2B2 LTR ERVL 1 446 -69 237 196 0 0 chr9 18955853 18955904 -98906723 + (TG)n Simple_repeat Simple_repeat 1 51 0 465 303 40 58 chr9 18955981 18956258 -98906369 + L2 LINE L2 1662 1933 -1381 2150 242 123 26 chr9 18956262 18956840 -98905787 - L1ME3A LINE L1 0 6170 5495 2540 62 0 3 chr9 18956840 18957149 -98905478 + AluY SINE Alu 1 308 -3 2150 242 123 26 chr9 18957149 18957350 -98905277 - L1ME3A LINE L1 -675 5495 5315 610 126 44 44 chr9 18957342 18957477 -98905150 - L1MA10 LINE L1 -2 6332 6198 * 991 185 18 44 chr9 18957466 18957693 -98904934 - L1MA10 LINE L1 -88 6246 6026 1495 273 70 35 chr9 18957834 18958716 -98903911 - L1ME3A LINE L1 -1621 4525 3613 980 183 0 6 chr9 18958743 18958912 -98903715 - AluJb SINE Alu -14 298 131 701 149 13 18 chr9 18958915 18959137 -98903490 + CT-rich Low_complexity Low_complexity 1 220 0 795 153 0 8 chr9 18959137 18959430 -98903197 - FLAM_C SINE Alu 0 292 1 21 0 0 0 chr9 18959435 18959456 -98903171 + AT_rich Low_complexity Low_complexity 1 21 0 266 322 91 0 chr9 18959458 18959579 -98903048 - L1ME3A LINE L1 -2560 3586 3455 242 313 61 0 chr9 18959610 18959709 -98902918 - L2 LINE L2 -588 2726 2622 189 213 0 98 chr9 18960201 18960262 -98902365 + L3b LINE CR1 1276 1330 -253 270 81 0 0 chr9 18961289 18961326 -98901301 + (A)n Simple_repeat Simple_repeat 1 37 0 366 344 27 6 chr9 18961339 18961522 -98901105 - MER5A DNA MER1_type -2 187 1 458 239 42 7 chr9 18961943 18962085 -98900542 + Charlie8 DNA MER1_type 83 229 -2188 540 182 27 9 chr9 18962156 18962266 -98900361 + MER69A DNA AcHobo 66 177 0 255 228 0 0 chr9 18962394 18962451 -98900176 + Charlie8 DNA MER1_type 404 460 -1957 21 0 0 0 chr9 18963637 18963658 -98898969 + AT_rich Low_complexity Low_complexity 1 21 0 1262 246 116 37 chr9 18963759 18964408 -98898219 + L1M4 LINE L1 3660 4359 -1787 820 283 79 46 chr9 18964411 18965075 -98897552 + L1ME LINE L1 1407 2137 -4444 302 326 58 22 chr9 18965118 18965566 -98897061 + L1ME LINE L1 2259 2722 -3999 1839 248 63 94 chr9 18965581 18966331 -98896296 + L1ME LINE L1 3093 3891 -2649 548 163 0 0 chr9 18966331 18966417 -98896210 + AluS SINE Alu 220 305 -7 1839 248 63 94 chr9 18966417 18966622 -98896005 + L1ME LINE L1 3891 4101 -2439 1246 197 7 30 chr9 18966641 18966910 -98895717 - AluJo SINE Alu -21 291 29 1453 270 38 44 chr9 18966948 18967536 -98895091 + L1ME LINE L1 5592 6171 -393 2569 46 0 3 chr9 18967606 18967910 -98894717 + AluY SINE Alu 1 303 -8 373 272 25 62 chr9 18968273 18968435 -98894192 + MIR SINE MIR 52 207 -55 1672 177 15 103 chr9 18968502 18968898 -98893729 + MLT1A1 LTR MaLR 5 365 0 755 299 69 14 chr9 18970154 18970588 -98892039 - L1ME4a LINE L1 -3 6118 5661 * 3862 189 13 14 chr9 18970586 18971363 -98891264 - L1MB8 LINE L1 0 6178 5403 300 361 66 0 chr9 18971375 18971541 -98891086 - L1ME4a LINE L1 -460 5661 5485 313 281 58 53 chr9 18971583 18971754 -98890873 - L1ME4a LINE L1 -756 5390 5219 2359 46 63 0 chr9 18971802 18972086 -98890541 - AluY SINE Alu -9 302 1 1950 72 4 16 chr9 18973206 18973456 -98889171 - L1PA5 LINE L1 0 6154 5908 2423 197 19 17 chr9 18973485 18973951 -98888676 + MLT1C LTR MaLR 1 467 0 211 296 159 0 chr9 18973961 18974049 -98888578 + MIR SINE MIR 89 190 -72 952 214 5 11 chr9 18974151 18974338 -98888289 - MER5A DNA MER1_type 0 189 4 303 28 0 0 chr9 18974755 18974791 -98887836 + (TA)n Simple_repeat Simple_repeat 1 36 0 7466 63 0 16 chr9 18974793 18975849 -98886778 - L1PA7 LINE L1 -11 6143 5093 466 113 0 0 chr9 18975849 18975911 -98886716 - AluSg/x SINE Alu -36 273 212 439 264 100 106 chr9 18976148 18976489 -98886138 - L2 LINE L2 0 3272 2934 2189 113 0 0 chr9 18977632 18977924 -98884703 + AluSg SINE Alu 1 292 -18 1987 123 35 3 chr9 18978182 18978466 -98884161 - AluSx SINE Alu -19 293 1 228 248 80 18 chr9 18978993 18979106 -98883521 - LTR67 LTR ERVL -10 547 428 234 62 0 0 chr9 18980009 18980041 -98882586 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 244 241 52 0 chr9 18980116 18980174 -98882453 + MIR3 SINE MIR 94 154 -54 2383 108 30 49 chr9 18980998 18981194 -98881433 - THE1B LTR MaLR 0 364 177 5636 18 5 0 chr9 18981194 18981803 -98880824 - L1PA3 LINE L1 0 6155 5544 2383 108 30 49 chr9 18981803 18981975 -98880652 - THE1B LTR MaLR -187 177 3 710 271 143 15 chr9 18982440 18982768 -98879859 - MLT1I LTR MaLR -39 370 1 388 275 94 110 chr9 18983707 18984558 -98878069 + L1M2 LINE L1 587 1362 -5487 292 237 248 25 chr9 18985860 18986058 -98876569 + MIR SINE MIR 18 259 -3 1853 138 65 0 chr9 18986641 18986932 -98875695 - AluSq SINE Alu -3 310 1 2470 184 15 32 chr9 18987591 18988064 -98874563 - MLT1C LTR MaLR -2 465 1 1727 216 33 25 chr9 18988210 18988572 -98874055 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr9 18989038 18989060 -98873567 + AT_rich Low_complexity Low_complexity 1 22 0 1954 132 0 7 chr9 18989175 18989475 -98873152 + AluSx SINE Alu 5 302 0 1057 215 31 110 chr9 18990436 18990855 -98871772 + MER88 LTR ERVL 79 464 0 23 78 0 0 chr9 18991317 18991368 -98871259 + AT_rich Low_complexity Low_complexity 1 51 0 2960 86 8 5 chr9 18991441 18991815 -98870812 - THE1C LTR MaLR 0 375 1 1875 138 25 0 chr9 18991877 18992177 -98870450 + AluSx SINE Alu 1 307 0 2027 130 3 25 chr9 18992548 18992864 -98869763 + AluSx SINE Alu 1 309 -3 345 206 246 40 chr9 18993086 18993212 -98869415 - MLT1J1 LTR MaLR -145 301 150 2056 220 85 5 chr9 18993347 18993793 -98868834 + MLT1E2 LTR MaLR 137 618 -8 383 207 41 90 chr9 18993812 18993957 -98868670 - MLT1J1 LTR MaLR -306 140 3 203 326 10 20 chr9 18993982 18994080 -98868547 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 795 194 8 0 chr9 18994152 18994281 -98868346 - FRAM SINE Alu -46 130 1 27 29 0 0 chr9 18994290 18994324 -98868303 + AT_rich Low_complexity Low_complexity 1 34 0 1574 154 70 7 chr9 18995725 18996010 -98866617 - AluJb SINE Alu -9 303 1 2791 151 75 0 chr9 18996905 18997375 -98865252 - MLT2B2 LTR ERVL -10 505 1 467 263 129 0 chr9 18997443 18997637 -98864990 + MER113 DNA MER1_type? 225 443 -78 4567 170 46 30 chr9 18997645 18998491 -98864136 + MER21B LTR ERV1 3 862 -1 297 325 115 50 chr9 18998963 18999391 -98863236 + L2 LINE L2 2638 3087 -185 1455 89 54 10 chr9 18999410 18999613 -98863014 + L1PA8 LINE L1 5960 6171 -1 222 269 0 0 chr9 18999744 18999796 -98862831 + L2 LINE L2 3262 3313 0 664 141 204 0 chr9 18999997 19000139 -98862488 - MIR SINE MIR -66 196 26 551 285 191 16 chr9 19000309 19000744 -98861883 + L1ME4a LINE L1 5403 5913 -208 2070 114 21 3 chr9 19002194 19002483 -98860144 + AluSx SINE Alu 3 296 -16 442 304 16 0 chr9 19002837 19002962 -98859665 - L2 LINE L2 -10 3262 3136 295 363 52 52 chr9 19003532 19003725 -98858902 + L2 LINE L2 2986 3178 -94 471 252 37 22 chr9 19003745 19003880 -98858747 - MIR SINE MIR -96 166 30 357 344 70 23 chr9 19003915 19004130 -98858497 + L1ME LINE L1 4795 5019 -1127 289 271 152 7 chr9 19004399 19004550 -98858077 + L1ME LINE L1 5561 5733 -388 233 262 56 28 chr9 19006776 19006883 -98855744 - MARNA DNA Mariner -211 375 266 1992 152 131 49 chr9 19008151 19008531 -98854096 + L1MB3 LINE L1 5671 6095 -88 2220 105 3 16 chr9 19008531 19008837 -98853790 + AluSp SINE Alu 1 302 -11 1992 152 131 49 chr9 19008837 19008931 -98853696 + L1MB3 LINE L1 6095 6180 -3 321 247 35 24 chr9 19009041 19009126 -98853501 - MIR3 SINE MIR -29 179 94 606 259 78 33 chr9 19009169 19009412 -98853215 + MIR SINE MIR 9 262 0 1619 181 14 20 chr9 19009930 19010223 -98852404 - AluJo SINE Alu -13 299 9 2179 104 0 0 chr9 19011037 19011340 -98851287 - AluSg SINE Alu 0 306 4 198 261 0 0 chr9 19011376 19011422 -98851205 + MER5B DNA MER1_type 132 177 -1 2276 165 8 3 chr9 19012053 19012428 -98850199 - Tigger3(Golem) DNA MER2_type 0 3029 2653 446 196 43 22 chr9 19012448 19012540 -98850087 - Tigger3(Golem) DNA MER2_type -2935 94 1 189 291 18 18 chr9 19012860 19012915 -98849712 - L2 LINE L2 -19 3253 3199 2176 78 4 0 chr9 19013093 19013364 -98849263 - AluY SINE Alu -5 306 35 439 259 89 15 chr9 19014092 19014227 -98848400 - MIR SINE MIR -76 186 42 317 255 163 0 chr9 19014364 19014517 -98848110 - MER102a DNA MER1_type 0 330 153 223 325 36 0 chr9 19015041 19015124 -98847503 + MIR SINE MIR 46 131 -131 210 299 76 57 chr9 19016889 19017046 -98845581 - MIR SINE MIR -45 217 58 293 248 239 9 chr9 19017336 19017449 -98845178 + MER5A DNA MER1_type 45 183 -6 1381 161 54 91 chr9 19017610 19017983 -98844644 - L1MB8 LINE L1 -13 6165 5807 252 0 0 0 chr9 19019248 19019276 -98843351 + (A)n Simple_repeat Simple_repeat 1 28 0 382 249 69 90 chr9 19019515 19019704 -98842923 - MIR SINE MIR -8 254 70 2369 81 3 13 chr9 19020327 19020637 -98841990 + AluY SINE Alu 1 307 -4 657 265 48 54 chr9 19021942 19022236 -98840391 - L1MC4a LINE L1 -1838 5970 5679 301 253 36 0 chr9 19022385 19022468 -98840159 - MER103 DNA DNA -2 164 79 1189 189 22 40 chr9 19023060 19023282 -98839345 + MER20 DNA MER1_type 1 218 -1 501 300 75 6 chr9 19023419 19023579 -98839048 + MER46C DNA MER2_type 7 177 -161 216 0 0 0 chr9 19023746 19023770 -98838857 + (TG)n Simple_repeat Simple_repeat 1 24 0 519 244 210 6 chr9 19023984 19024160 -98838467 - MIR SINE MIR -6 256 45 420 222 42 103 chr9 19024228 19024352 -98838275 - L1ME4a LINE L1 -226 5895 5794 2272 104 3 0 chr9 19024352 19024650 -98837977 + AluSq SINE Alu 5 303 -10 420 222 42 103 chr9 19024650 19024786 -98837841 - L1ME4a LINE L1 -327 5794 5651 24 53 0 0 chr9 19025019 19025057 -98837570 + AT_rich Low_complexity Low_complexity 1 38 0 340 286 0 0 chr9 19025210 19025287 -98837340 - L2 LINE L2 -7 3265 3189 713 265 22 0 chr9 19025298 19025483 -98837144 - MIR SINE MIR 0 262 74 259 267 63 91 chr9 19025511 19025796 -98836831 - L2 LINE L2 -665 2649 2373 338 315 63 31 chr9 19026039 19026261 -98836366 - L1ME4a LINE L1 -274 5847 5619 692 119 8 0 chr9 19027886 19028004 -98834623 + (TTTCC)n Simple_repeat Simple_repeat 1 119 0 291 157 0 0 chr9 19027992 19028043 -98834584 + C-rich Low_complexity Low_complexity 1 51 0 * 181 271 21 104 chr9 19028406 19028502 -98834125 - L2 LINE L2 -1237 2077 1990 2317 244 113 51 chr9 19028548 19028658 -98833969 - L1MC4 LINE L1 0 8042 7940 288 0 0 0 chr9 19028658 19028690 -98833937 + (CA)n Simple_repeat Simple_repeat 2 33 0 2317 244 113 51 chr9 19028690 19029755 -98832872 - L1MC4 LINE L1 -102 7940 6794 278 260 47 123 chr9 19030397 19030632 -98831995 - MIR SINE MIR -25 237 21 402 21 0 0 chr9 19033364 19033411 -98829216 + (TG)n Simple_repeat Simple_repeat 1 47 0 410 335 35 17 chr9 19034071 19034244 -98828383 + MIR3 SINE MIR 31 206 -2 203 356 75 40 chr9 19034868 19035042 -98827585 + MER5A DNA MER1_type 10 189 0 228 65 0 0 chr9 19036083 19036114 -98826513 - MADE1 DNA Mariner -49 31 1 230 311 30 37 chr9 19037439 19037603 -98825024 - L1ME LINE L1 -343 5778 5616 289 327 181 0 chr9 19038984 19039183 -98823444 + MIR SINE MIR 2 236 -26 184 288 55 27 chr9 19039494 19039567 -98823060 + MIR SINE MIR 44 118 -90 3255 91 21 2 chr9 19039933 19040363 -98822264 - L1PA12 LINE L1 -2 6166 5729 454 302 29 7 chr9 19042521 19042660 -98819967 + MIR SINE MIR 11 152 -110 2665 29 0 3 chr9 19042827 19043135 -98819492 + AluY SINE Alu 1 307 -4 601 318 69 31 chr9 19043266 19043555 -98819072 - L2 LINE L2 -14 3299 3000 2320 245 107 20 chr9 19044088 19045075 -98817552 + L1ME1 LINE L1 5064 6134 -32 338 179 0 0 chr9 19046327 19046394 -98816233 + L1MB8 LINE L1 5804 5870 -308 7318 106 16 22 chr9 19046397 19052077 -98810550 - L1PA7 LINE L1 -4 6465 718 255 332 145 37 chr9 19052249 19052364 -98810263 - MIR SINE MIR 0 262 161 228 35 0 0 chr9 19052364 19052393 -98810234 + (TC)n Simple_repeat Simple_repeat 2 30 0 255 332 145 37 chr9 19052393 19052491 -98810136 - MIR SINE MIR -101 161 26 299 209 174 0 chr9 19052501 19052587 -98810040 + MIR SINE MIR 117 217 -45 225 340 29 10 chr9 19052611 19052714 -98809913 + MIR SINE MIR 139 243 -19 2505 140 26 28 chr9 19052768 19053197 -98809430 + Tigger2a DNA MER2_type 1 428 -6 25 0 0 0 chr9 19053549 19053574 -98809053 + AT_rich Low_complexity Low_complexity 1 25 0 1367 168 134 11 chr9 19054054 19054316 -98808311 - AluSg SINE Alu -13 297 4 2176 89 45 0 chr9 19055318 19055609 -98807018 - AluSg SINE Alu -6 304 1 194 208 19 0 chr9 19055937 19055990 -98806637 + (TG)n Simple_repeat Simple_repeat 1 54 0 308 293 99 36 chr9 19056055 19056529 -98806098 - L1M4 LINE L1 -1377 5005 4502 521 234 21 0 chr9 19056553 19056698 -98805929 - L1MEc LINE L1 -4688 1708 1561 484 255 64 69 chr9 19056895 19057471 -98805156 - L1M4 LINE L1 -2887 3495 2923 895 151 14 0 chr9 19057566 19057705 -98804922 + MER46A DNA MER2_type 6 146 -90 234 288 77 30 chr9 19057724 19057957 -98804670 - L1M4 LINE L1 -3571 2811 2568 403 228 78 72 chr9 19058021 19058201 -98804426 - L1M4 LINE L1 -3927 2457 2277 380 276 126 40 chr9 19058209 19058383 -98804244 - HAL1 LINE L1 -1157 1350 1162 455 216 108 32 chr9 19058537 19058686 -98803941 + MSTC LTR MaLR 3 156 -270 26 30 0 0 chr9 19060555 19060588 -98802039 + AT_rich Low_complexity Low_complexity 1 33 0 640 92 0 10 chr9 19061649 19061747 -98800880 + AluY SINE Alu 209 305 -6 204 312 174 37 chr9 19062118 19062227 -98800400 - L2 LINE L2 -28 3244 3121 334 303 86 34 chr9 19062390 19062565 -98800062 + MIR SINE MIR 14 197 -65 597 260 45 0 chr9 19062627 19062781 -98799846 + MIR SINE MIR 76 236 -26 209 206 93 52 chr9 19064848 19064945 -98797682 + MIR SINE MIR 84 184 -78 216 267 57 76 chr9 19064966 19065071 -98797556 + MIR SINE MIR 51 153 -109 457 237 118 24 chr9 19065156 19065325 -98797302 + Charlie8 DNA MER1_type 84 268 -2149 277 393 16 0 chr9 19065567 19065689 -98796938 + MIR3 SINE MIR 64 187 -21 451 311 178 22 chr9 19065733 19065832 -98796795 + L3 LINE CR1 446 528 -1049 2373 106 0 0 chr9 19065832 19066143 -98796484 + AluSx SINE Alu 1 311 -1 451 311 178 22 chr9 19066143 19066458 -98796169 + L3 LINE CR1 528 925 -652 313 331 126 11 chr9 19066715 19066890 -98795737 + MIR SINE MIR 3 197 -65 692 249 63 39 chr9 19066916 19067201 -98795426 - L1M4 LINE L1 -3317 2829 2538 2249 80 20 7 chr9 19067656 19067955 -98794672 - AluSg SINE Alu -7 303 1 25 0 0 0 chr9 19068332 19068357 -98794270 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 19068991 19069014 -98793613 + AT_rich Low_complexity Low_complexity 1 23 0 193 333 0 13 chr9 19069386 19069461 -98793166 + MIR SINE MIR 102 175 -87 1479 238 90 38 chr9 19069919 19070453 -98792174 - L1MC4 LINE L1 0 8042 7481 2555 226 125 60 chr9 19070455 19071498 -98791129 - L1MC4a LINE L1 -795 7013 5897 306 0 0 0 chr9 19071498 19071532 -98791095 + (TG)n Simple_repeat Simple_repeat 2 35 0 2555 226 125 60 chr9 19071532 19071557 -98791070 - L1MC4a LINE L1 -1911 5897 5875 1616 225 43 11 chr9 19071591 19072036 -98790591 - L1MC4a LINE L1 -2033 5775 5317 2723 215 103 14 chr9 19072152 19073399 -98789228 - L1MB4 LINE L1 0 6180 4828 1711 200 0 3 chr9 19073605 19073910 -98788717 - AluJo SINE Alu -8 304 1 2927 212 85 23 chr9 19074042 19074737 -98787890 - L1MD2 LINE L1 -1 6358 5613 1391 249 49 73 chr9 19074737 19075364 -98787263 - LTR9 LTR ERV1 0 612 1 2927 212 85 23 chr9 19075364 19075409 -98787218 - L1MD2 LINE L1 -746 5613 5572 928 180 38 11 chr9 19075775 19075958 -98786669 - MER5A DNA MER1_type 0 189 2 1385 136 0 0 chr9 19076370 19076591 -98786036 + L1MA2 LINE L1 6084 6304 0 317 294 37 37 chr9 19077738 19077874 -98784753 + L2 LINE L2 2175 2310 -1004 1834 138 33 16 chr9 19078094 19078398 -98784229 - AluJb SINE Alu -3 309 1 251 119 0 0 chr9 19079154 19079196 -98783431 - MLT1H LTR MaLR -26 541 500 1827 142 4 0 chr9 19079214 19079505 -98783122 - AluSx SINE Alu 0 305 14 990 242 77 79 chr9 19079506 19079998 -98782629 - MLT1H LTR MaLR -48 501 11 2398 76 3 0 chr9 19080617 19080921 -98781706 + AluY SINE Alu 1 305 -6 2195 125 0 0 chr9 19081276 19081579 -98781048 + AluSx SINE Alu 1 303 -9 183 42 0 0 chr9 19082577 19082601 -98780026 + (TA)n Simple_repeat Simple_repeat 1 24 0 21511 39 3 0 chr9 19082601 19086027 -98776600 - L1PA4 LINE L1 -19 6136 2707 5791 89 27 27 chr9 19086450 19087647 -98774980 + L1PA8A LINE L1 4936 6131 0 848 294 119 21 chr9 19087874 19088385 -98774242 + L1MCc LINE L1 24 584 -5839 2293 255 73 32 chr9 19088500 19089806 -98772821 + L1MCc LINE L1 808 2179 -4762 272 143 0 143 chr9 19090029 19090085 -98772542 - MLT2C1 LTR ERVL 0 397 355 1679 199 32 18 chr9 19090131 19090472 -98772155 - MLT2C1 LTR ERVL -51 346 1 2705 22 0 0 chr9 19090499 19090816 -98771811 - L1PA2 LINE L1 -1092 5054 4738 7809 13 5 0 chr9 19090816 19091904 -98770723 + L1PA2 LINE L1 5063 6154 -1 5068 159 29 24 chr9 19093449 19094434 -98768193 + L1MC3 LINE L1 6700 7689 -96 942 297 127 10 chr9 19094479 19094956 -98767671 + L2 LINE L2 2781 3313 0 228 350 49 55 chr9 19095030 19095193 -98767434 + L2 LINE L2 3106 3267 -5 492 262 123 24 chr9 19096906 19097158 -98765469 + L1MC4a LINE L1 5574 5850 -1958 1990 140 7 3 chr9 19097315 19097607 -98765020 + AluSx SINE Alu 1 293 -19 2570 89 20 3 chr9 19097683 19098032 -98764595 - THE1A LTR MaLR 0 355 1 1033 155 107 19 chr9 19099076 19099282 -98763345 - MSTA LTR MaLR 0 428 205 198 0 0 0 chr9 19099816 19099838 -98762789 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 274 335 73 34 chr9 19100899 19101078 -98761549 + MIR3 SINE MIR 2 187 -21 2467 109 11 16 chr9 19101362 19101739 -98760888 - THE1C LTR MaLR 0 375 1 2289 104 0 0 chr9 19102176 19102474 -98760153 - AluSg SINE Alu -12 298 1 222 302 71 32 chr9 19103088 19103214 -98759413 + MIR SINE MIR 16 146 -62 2214 109 3 3 chr9 19103827 19104129 -98758498 + AluSc SINE Alu 1 302 -7 285 340 106 11 chr9 19104705 19104970 -98757657 - L1MC/D LINE L1 -2000 5808 5519 308 102 68 0 chr9 19105787 19105846 -98756781 + MADE1 DNA Mariner 18 80 0 190 220 85 34 chr9 19105943 19106002 -98756625 + MIR SINE MIR 83 144 -64 412 252 70 7 chr9 19106178 19106321 -98756306 + L1MEd LINE L1 28 179 -5940 559 301 132 83 chr9 19106444 19107449 -98755178 + L1 LINE L1 4167 5221 -925 24 32 0 0 chr9 19108189 19108220 -98754407 + AT_rich Low_complexity Low_complexity 1 31 0 8404 173 41 5 chr9 19108358 19110484 -98752143 + L1P4 LINE L1 3595 5795 -370 2401 146 54 2 chr9 19110502 19110912 -98751715 + L1PA15 LINE L1 5727 6157 -8 23 33 0 0 chr9 19110934 19110964 -98751663 + AT_rich Low_complexity Low_complexity 1 30 0 196 363 71 18 chr9 19111894 19112007 -98750620 - L3 LINE CR1 -3 1574 1456 204 178 22 0 chr9 19112112 19112157 -98750470 + MIR SINE MIR 85 130 -78 306 0 0 0 chr9 19114633 19114667 -98747960 + (CA)n Simple_repeat Simple_repeat 2 35 0 384 319 136 6 chr9 19114750 19114919 -98747708 - L2 LINE L2 -3 3269 3079 1671 86 10 6 chr9 19115046 19115344 -98747283 + THE1C LTR MaLR 1 375 0 1467 164 62 17 chr9 19115446 19115738 -98746889 + L1MB3 LINE L1 5587 5891 -292 669 174 294 0 chr9 19115773 19116019 -98746608 - MER44D DNA MER2_type -6 599 7 295 276 20 31 chr9 19116044 19116142 -98746485 + MIR SINE MIR 166 262 0 3034 231 44 24 chr9 19116263 19117755 -98744872 - L1ME2 LINE L1 -9 6224 4696 300 137 0 0 chr9 19117775 19117826 -98744801 + (CCCA)n Simple_repeat Simple_repeat 2 52 0 986 242 64 58 chr9 19117829 19118172 -98744455 - L1ME2 LINE L1 -2005 4210 3866 * 5227 238 50 63 chr9 19118170 19120142 -98742485 - L1ME2 LINE L1 -2806 3409 1413 272 175 0 0 chr9 19120142 19120199 -98742428 - FLAM_A SINE Alu 0 133 77 5227 238 50 63 chr9 19120199 19120639 -98741988 - L1ME2 LINE L1 -4802 1413 969 2182 162 0 16 chr9 19120639 19121010 -98741617 - MER47A DNA MER2_type 0 366 2 5227 238 50 63 chr9 19121010 19121970 -98740657 - L1ME2 LINE L1 -5246 969 45 316 347 102 14 chr9 19122210 19122426 -98740201 - L3 LINE CR1 -137 1440 1206 218 261 0 0 chr9 19122425 19122471 -98740156 + MIR SINE MIR 98 143 -65 * 184 290 100 50 chr9 19122504 19122604 -98740023 - L2 LINE L2 -25 3247 3143 338 247 70 95 chr9 19123363 19123393 -98739234 - MER5A DNA MER1_type -35 154 125 1755 168 0 24 chr9 19123393 19123691 -98738936 + AluJb SINE Alu 1 291 -21 338 247 70 95 chr9 19123691 19123818 -98738809 - MER5A DNA MER1_type -64 125 1 246 217 203 58 chr9 19124021 19124159 -98738468 + MIR SINE MIR 78 235 -27 1868 160 0 23 chr9 19124456 19124762 -98737865 + AluJo SINE Alu 1 299 -13 31 26 0 0 chr9 19124848 19124886 -98737741 + AT_rich Low_complexity Low_complexity 1 38 0 2380 153 15 5 chr9 19125247 19125646 -98736981 - MER57A LTR ERV1 0 403 1 230 185 62 74 chr9 19126426 19126507 -98736120 - L1ME LINE L1 -280 5841 5762 909 150 61 33 chr9 19126654 19126834 -98735793 + MLT2B2 LTR ERVL 323 507 -8 253 256 103 26 chr9 19127014 19127131 -98735496 - MIR SINE MIR -100 162 37 24 32 0 0 chr9 19127450 19127481 -98735146 + AT_rich Low_complexity Low_complexity 1 31 0 551 208 15 8 chr9 19127481 19127611 -98735016 - L1PA7 LINE L1 -3 6151 6021 1531 236 43 89 chr9 19128751 19129760 -98732867 - L1M4c LINE L1 -4795 2164 1192 2169 266 33 55 chr9 19130229 19131164 -98731463 - L1M4c LINE L1 -5652 1207 3 207 254 139 74 chr9 19131231 19131353 -98731274 + L2 LINE L2 3184 3313 0 806 316 48 30 chr9 19131587 19132127 -98730500 + L1ME3A LINE L1 5312 5816 -305 434 270 142 0 chr9 19132271 19132419 -98730208 + MER58C DNA MER1_type 47 215 0 533 317 55 35 chr9 19132498 19132895 -98729732 + LTR16C LTR ERVL 87 491 0 32 0 0 0 chr9 19133390 19133422 -98729205 + AT_rich Low_complexity Low_complexity 1 32 0 10103 94 11 4 chr9 19133433 19135670 -98726957 - L1PA7 LINE L1 -4 6150 3894 931 157 19 6 chr9 19136178 19136337 -98726290 + MLT1A2 LTR MaLR 1 161 -213 381 58 0 0 chr9 19136374 19136426 -98726201 + (GA)n Simple_repeat Simple_repeat 2 53 0 784 233 5 43 chr9 19136441 19136651 -98725976 + MLT1A2 LTR MaLR 187 388 -2 191 314 20 0 chr9 19136851 19136902 -98725725 + L2 LINE L2 3221 3272 0 258 316 120 26 chr9 19137406 19137523 -98725104 - L2 LINE L2 -37 3235 3108 254 233 19 78 chr9 19137867 19137970 -98724657 + MIR SINE MIR 30 126 -82 26 0 0 0 chr9 19138203 19138229 -98724398 + AT_rich Low_complexity Low_complexity 1 26 0 1221 51 0 6 chr9 19138231 19138388 -98724239 - L1PA3 LINE L1 -3 6152 5997 4339 18 0 2 chr9 19138388 19138886 -98723741 + L1PA3 LINE L1 5458 5954 -201 188 242 189 21 chr9 19139405 19139500 -98723127 - MIR SINE MIR -84 178 68 1891 178 21 23 chr9 19139503 19139930 -98722697 + L1MB7 LINE L1 5744 6169 -15 1242 195 8 41 chr9 19140413 19140659 -98721968 - MER8 DNA MER2_type 0 239 2 185 160 0 40 chr9 19141122 19141172 -98721455 + (TATG)n Simple_repeat Simple_repeat 4 51 0 3710 55 2 1 chr9 19141836 19142313 -98720314 + L1PA7 LINE L1 5670 6150 -4 263 336 66 8 chr9 19143016 19143138 -98719489 + L2 LINE L2 3162 3290 -23 242 161 0 81 chr9 19143365 19143427 -98719200 - MLT2B1 LTR ERVL 0 520 464 384 240 0 0 chr9 19143429 19143529 -98719098 + (TA)n Simple_repeat Simple_repeat 1 100 0 231 100 0 50 chr9 19143538 19143578 -98719049 - MLT2C1 LTR ERVL -48 366 329 297 0 0 0 chr9 19143594 19143627 -98719000 + (GA)n Simple_repeat Simple_repeat 2 34 0 1559 196 27 15 chr9 19143631 19143967 -98718660 - MLT2C1 LTR ERVL -57 340 1 239 246 90 126 chr9 19143972 19144139 -98718488 - MIR3 SINE MIR -9 199 39 270 0 0 0 chr9 19145418 19145448 -98717179 + (TATTG)n Simple_repeat Simple_repeat 2 31 0 370 351 48 11 chr9 19145762 19145950 -98716677 - MIR SINE MIR -50 212 18 220 262 0 0 chr9 19148475 19148517 -98714110 + polypyrimidine Low_complexity Low_complexity 4 45 0 288 0 0 0 chr9 19148522 19148554 -98714073 + (CA)n Simple_repeat Simple_repeat 2 33 0 293 264 99 25 chr9 19148964 19149085 -98713542 + L3 LINE CR1 1404 1533 -44 1887 158 7 10 chr9 19149322 19149620 -98713007 - AluJb SINE Alu -15 297 1 2330 67 7 7 chr9 19151028 19151328 -98711299 - AluY SINE Alu -11 300 1 354 379 49 5 chr9 19151764 19151967 -98710660 + MIR SINE MIR 20 231 -31 2115 119 3 0 chr9 19152617 19152925 -98709702 - AluSx SINE Alu 0 310 2 267 305 181 58 chr9 19153578 19153870 -98708757 - L2 LINE L2 0 3272 2945 486 287 126 51 chr9 19156152 19156410 -98706217 + L3 LINE CR1 1134 1418 -159 381 58 0 0 chr9 19156410 19156462 -98706165 + (TG)n Simple_repeat Simple_repeat 2 53 0 486 287 126 51 chr9 19156462 19156496 -98706131 + L3 LINE CR1 1418 1448 -129 212 139 0 23 chr9 19157421 19157464 -98705163 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 955 182 0 13 chr9 19157475 19157634 -98704993 - AluJo SINE Alu -37 275 119 9483 160 7 8 chr9 19157654 19159344 -98703283 - L1PA13 LINE L1 0 6163 4440 2417 86 0 0 chr9 19159344 19159645 -98702982 + AluY SINE Alu 1 301 -10 9483 160 7 8 chr9 19159645 19160421 -98702206 - L1PA13 LINE L1 -1723 4440 3665 677 226 15 0 chr9 19160421 19160554 -98702073 - AluJo SINE Alu -177 135 1 612 257 8 55 chr9 19160966 19161203 -98701424 - MER58B DNA MER1_type -37 304 79 6660 35 0 7 chr9 19161273 19162118 -98700509 - L1PA5 LINE L1 -1 6153 5315 2530 32 12 17 chr9 19162114 19162459 -98700168 + L1PA5 LINE L1 5000 5342 -804 * 2210 128 0 3 chr9 19163232 19163544 -98699083 + AluSx SINE Alu 2 312 0 298 253 197 8 chr9 19164442 19164622 -98698005 + MIR SINE MIR 3 262 0 250 289 0 0 chr9 19164983 19165035 -98697592 + MER91B DNA MER1_type 2 53 -137 216 0 0 0 chr9 19167075 19167099 -98695528 + (CAAAG)n Simple_repeat Simple_repeat 4 27 0 1296 183 88 60 chr9 19168214 19168668 -98693959 + MLT1C LTR MaLR 1 467 0 382 292 46 20 chr9 19168668 19168820 -98693807 - MIR SINE MIR -67 141 3 22 0 0 0 chr9 19168917 19168939 -98693688 + AT_rich Low_complexity Low_complexity 1 22 0 397 295 132 37 chr9 19170560 19170855 -98691772 + L2 LINE L2 2950 3272 0 1380 147 99 3 chr9 19171462 19171754 -98690873 - MER33 DNA MER1_type -4 320 1 202 325 70 26 chr9 19172492 19172606 -98690021 + L2 LINE L2 3154 3272 0 2323 103 0 0 chr9 19173042 19173344 -98689283 + AluY SINE Alu 1 302 -9 201 280 155 36 chr9 19173467 19173635 -98688992 + L2 LINE L2 2776 2963 -351 475 302 182 26 chr9 19173784 19174246 -98688381 + L2 LINE L2 2712 3241 -72 667 275 132 52 chr9 19174321 19174828 -98687799 + L2 LINE L2 2637 3310 -3 381 264 54 31 chr9 19174835 19174964 -98687663 + L2 LINE L2 3182 3313 0 217 359 99 15 chr9 19175203 19175334 -98687293 - MIR SINE MIR -101 161 20 587 138 8 115 chr9 19175431 19175561 -98687066 + MLT1E LTR MaLR 49 164 -429 * 1299 251 44 58 chr9 19175556 19176038 -98686589 + MLT1E LTR MaLR 119 593 0 267 213 0 0 chr9 19176284 19176331 -98686296 + L2 LINE L2 3251 3297 -16 8194 205 31 8 chr9 19177272 19180197 -98682430 - L1MB3 LINE L1 0 6183 3191 215 250 118 0 chr9 19180338 19180406 -98682221 + MIR SINE MIR 107 182 -80 694 249 88 0 chr9 19181718 19181911 -98680716 + MER63A DNA MER1_type 1 210 0 1043 202 62 87 chr9 19182452 19182808 -98679819 - MLT1A2 LTR MaLR -7 367 21 349 237 76 46 chr9 19183047 19183178 -98679449 - MIR SINE MIR -4 258 124 444 234 211 11 chr9 19183206 19183381 -98679246 - L2 LINE L2 -29 3284 3075 1967 254 88 19 chr9 19183439 19184017 -98678610 - L2 LINE L2 -474 2840 2223 231 312 26 13 chr9 19184160 19184237 -98678390 + MER5A DNA MER1_type 111 188 -1 223 351 30 38 chr9 19184323 19184454 -98678173 + MIR SINE MIR 13 142 -120 608 202 9 0 chr9 19184921 19185030 -98677597 + MER5B DNA MER1_type 1 110 -68 651 269 197 3 chr9 19185031 19185417 -98677210 - L1ME3A LINE L1 0 6170 5710 7588 11 0 0 chr9 19185435 19186481 -98676146 - L1HS LINE L1 -3 6152 5107 782 228 45 4 chr9 19186479 19186696 -98675931 - L1ME3A LINE L1 -444 5677 5467 * 265 350 65 74 chr9 19186710 19187019 -98675608 + L2 LINE L2 2955 3260 -12 21 36 0 0 chr9 19187707 19187735 -98674892 + AT_rich Low_complexity Low_complexity 1 28 0 785 259 8 38 chr9 19187752 19187991 -98674636 - MLT2E LTR ERVL -396 232 1 263 323 0 73 chr9 19189482 19189606 -98673021 + L2 LINE L2 3078 3192 -80 1501 197 20 24 chr9 19189670 19189965 -98672662 - AluJo SINE Alu -18 294 1 228 336 16 105 chr9 19190074 19190321 -98672306 + L2 LINE L2 2987 3211 -61 234 299 23 58 chr9 19193173 19193260 -98669367 - MIR SINE MIR -158 104 21 281 316 40 46 chr9 19193531 19193683 -98668944 + L3 LINE CR1 1418 1568 -9 309 279 150 29 chr9 19193750 19193890 -98668737 + MER5A DNA MER1_type 30 186 -3 231 103 0 0 chr9 19194739 19194768 -98667859 - MER47A DNA MER2_type 0 366 338 * 858 170 92 0 chr9 19194766 19194919 -98667708 - MER47A DNA MER2_type -198 168 2 1894 152 6 67 chr9 19194978 19195339 -98667288 - MLT2B3 LTR ERVL -215 339 1 265 303 118 0 chr9 19195635 19195711 -98666916 - MIR3 SINE MIR -14 194 110 213 125 0 62 chr9 19196424 19196472 -98666155 + (TTTTG)n Simple_repeat Simple_repeat 4 48 0 454 211 131 46 chr9 19196566 19196741 -98665886 - MIR SINE MIR -12 250 61 988 70 31 0 chr9 19197872 19198000 -98664627 - L1MA2 LINE L1 -9 6295 6164 209 286 78 52 chr9 19198000 19198077 -98664550 + L2 LINE L2 3176 3254 -18 264 274 137 0 chr9 19199808 19199925 -98662702 - MIR SINE MIR -56 206 74 2159 136 0 3 chr9 19202489 19202799 -98659828 + AluSx SINE Alu 1 309 -3 2729 99 8 19 chr9 19203012 19203376 -98659251 - THE1B LTR MaLR -4 360 1 1083 248 91 56 chr9 19203480 19203662 -98658965 + L1MB7 LINE L1 4219 4393 -1753 2421 80 0 0 chr9 19203662 19203961 -98658666 + AluY SINE Alu 1 299 -12 1083 248 91 56 chr9 19203961 19204372 -98658255 + L1MB7 LINE L1 4393 4833 -1313 308 227 207 27 chr9 19254651 19254801 -98607826 + L1MCa LINE L1 1238 1414 -5012 1862 144 22 11 chr9 19254857 19255134 -98607493 + AluSx SINE Alu 1 280 -32 367 202 52 107 chr9 19255160 19255412 -98607215 + L1MCa LINE L1 1650 1887 -4720 1288 244 41 24 chr9 19255591 19256083 -98606544 + L1MCa LINE L1 2132 2631 -3976 783 190 0 14 chr9 19257615 19257757 -98604870 + MLT1A1 LTR MaLR 226 365 0 1202 264 112 38 chr9 19257757 19257797 -98604830 - L2 LINE L2 -490 2824 2788 2361 107 107 13 chr9 19257797 19258188 -98604439 + MSTA LTR MaLR 1 428 0 1202 264 112 38 chr9 19258188 19258654 -98603973 - L2 LINE L2 -526 2788 2280 1890 208 150 73 chr9 19258655 19259256 -98603371 - MLT1E1 LTR MaLR -7 647 1 1198 173 5 5 chr9 19259453 19259650 -98602977 - AluJo SINE Alu -32 280 84 516 160 0 101 chr9 19259663 19259747 -98602880 - MIR SINE MIR -117 145 75 2100 105 32 0 chr9 19259747 19260032 -98602595 + AluSg1 SINE Alu 1 294 -15 516 160 0 101 chr9 19260032 19260066 -98602561 - MIR SINE MIR -187 75 39 348 328 25 45 chr9 19260094 19260295 -98602332 - L2 LINE L2 -1154 2160 1964 297 261 142 52 chr9 19260360 19260571 -98602056 - L2 LINE L2 0 3313 3084 1632 196 40 14 chr9 19260601 19260953 -98601674 - MLT1A1 LTR MaLR -4 361 1 835 187 65 84 chr9 19260953 19261034 -98601593 - MLT1B LTR MaLR -133 257 176 318 67 0 0 chr9 19261034 19261079 -98601548 + (CA)n Simple_repeat Simple_repeat 2 46 0 275 0 0 28 chr9 19261083 19261119 -98601508 + (GA)n Simple_repeat Simple_repeat 1 35 0 835 187 65 84 chr9 19261119 19261294 -98601333 - MLT1B LTR MaLR -217 173 1 21 0 0 0 chr9 19262934 19262955 -98599672 + AT_rich Low_complexity Low_complexity 1 21 0 4046 175 51 40 chr9 19263195 19264299 -98598328 + L1MB7 LINE L1 4915 6039 -145 222 37 0 0 chr9 19264299 19264326 -98598301 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 4046 175 51 40 chr9 19264326 19264464 -98598163 + L1MB7 LINE L1 6039 6174 -10 182 324 73 0 chr9 19264558 19264626 -98598001 - L2 LINE L2 0 3272 3200 385 164 33 0 chr9 19265066 19265127 -98597500 - AluS SINE Alu -236 63 1 4689 258 76 33 chr9 19265138 19267896 -98594731 - L1 LINE L1 -896 5250 2335 3678 181 15 54 chr9 19268181 19269000 -98593627 - L1MB8 LINE L1 -9 6169 5383 1159 254 69 65 chr9 19269318 19269613 -98593014 - HAL1 LINE L1 -823 1684 1385 1253 155 32 9 chr9 19269613 19269832 -98592795 - MER58A DNA MER1_type 0 224 1 1159 254 69 65 chr9 19269832 19270104 -98592523 - HAL1 LINE L1 -1122 1385 1115 251 200 0 0 chr9 19270265 19270320 -98592307 - HAL1 LINE L1 -2310 197 143 405 0 0 0 chr9 19270641 19270686 -98591941 + (CA)n Simple_repeat Simple_repeat 2 46 0 267 231 111 19 chr9 19270882 19270990 -98591637 - MIR SINE MIR -31 231 114 250 231 29 87 chr9 19271102 19271206 -98591421 - MIR3 SINE MIR -44 164 67 213 309 12 36 chr9 19271322 19271406 -98591221 - L2 LINE L2 -646 2668 2587 1085 309 124 45 chr9 19272108 19273082 -98589545 + L2 LINE L2 979 2029 -1285 254 319 164 43 chr9 19273296 19273412 -98589215 + L2 LINE L2 3143 3272 0 286 274 186 0 chr9 19275326 19275428 -98587199 + L2 LINE L2 3184 3304 -9 211 150 0 25 chr9 19275654 19275694 -98586933 + (TA)n Simple_repeat Simple_repeat 2 40 0 1852 93 0 4 chr9 19275960 19276207 -98586420 - AluSc SINE Alu -63 246 1 200 35 35 0 chr9 19276543 19276572 -98586055 + (TA)n Simple_repeat Simple_repeat 2 31 0 415 176 0 0 chr9 19276693 19276761 -98585866 - AluS SINE Alu -245 68 1 441 280 56 0 chr9 19278458 19278583 -98584044 + L2 LINE L2 3177 3308 -5 358 302 9 9 chr9 19280114 19280230 -98582397 + MER5A DNA MER1_type 2 117 -72 180 372 54 16 chr9 19281622 19281751 -98580876 + MIR3 SINE MIR 12 145 -63 330 291 17 0 chr9 19282738 19282839 -98579788 - MER5A DNA MER1_type -36 142 50 282 273 91 33 chr9 19282941 19283062 -98579565 - MIR3 SINE MIR -68 140 13 1399 73 0 5 chr9 19283355 19283547 -98579080 - L1P LINE L1 -1390 4756 4566 217 336 45 9 chr9 19284075 19284185 -98578442 + MIR SINE MIR 93 206 -56 186 43 0 0 chr9 19286469 19286492 -98576135 + (T)n Simple_repeat Simple_repeat 1 23 0 548 252 91 47 chr9 19288083 19288337 -98574290 + MLT1I LTR MaLR 145 409 0 7941 10 0 0 chr9 19288775 19290175 -98572452 - L1PA2 LINE L1 -1 6154 4755 * 17070 29 0 0 chr9 19290168 19291655 -98570972 + L1PA3 LINE L1 3303 4820 -1335 189 0 0 0 chr9 19291655 19291676 -98570951 + (CAGAA)n Simple_repeat Simple_repeat 4 24 0 17070 29 0 0 chr9 19291676 19293010 -98569617 + L1PA3 LINE L1 4819 6152 -3 325 266 97 7 chr9 19294495 19294649 -98567978 - MIR3 SINE MIR -19 189 22 4023 25 2 0 chr9 19294701 19295177 -98567450 - L1PA3 LINE L1 0 6155 5679 3587 19 1 0 chr9 19295179 19295842 -98566785 + L1P1 LINE L1 4958 5621 -534 268 378 61 12 chr9 19296225 19296389 -98566238 + L2 LINE L2 3101 3272 0 24 53 0 0 chr9 19298021 19298059 -98564568 + AT_rich Low_complexity Low_complexity 1 38 0 2447 91 3 0 chr9 19298185 19298494 -98564133 + AluY SINE Alu 1 310 -1 314 258 80 116 chr9 19298764 19299066 -98563561 + L1M2 LINE L1 698 988 -5861 441 260 22 39 chr9 19300421 19300602 -98562025 + MER5B DNA MER1_type 1 178 0 2183 108 0 3 chr9 19300629 19300926 -98561701 - AluSq SINE Alu -17 296 1 1867 9 0 0 chr9 19300956 19301175 -98561452 - L1P1 LINE L1 -468 5687 5469 1499 223 20 15 chr9 19302498 19302889 -98559738 - L1MB3 LINE L1 -9 6174 5782 324 221 0 0 chr9 19302890 19302967 -98559660 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 267 207 73 0 chr9 19302970 19303052 -98559575 + L1MC4 LINE L1 6616 6703 -1339 31 44 0 0 chr9 19303073 19303118 -98559509 + AT_rich Low_complexity Low_complexity 1 45 0 1804 161 27 15 chr9 19303118 19303454 -98559173 - MER2 DNA MER2_type -5 340 1 541 162 15 17 chr9 19303454 19303589 -98559038 - L1MB3 LINE L1 -392 5786 5656 1950 147 0 13 chr9 19303589 19303896 -98558731 - AluJb SINE Alu 0 312 10 713 202 0 0 chr9 19304235 19304359 -98558268 + FLAM_C SINE Alu 2 125 -18 925 117 0 0 chr9 19304819 19304956 -98557671 - MSTA LTR MaLR -291 137 1 1909 172 0 3 chr9 19305270 19305572 -98557055 + AluJb SINE Alu 1 301 -11 328 310 39 17 chr9 19306476 19306609 -98556018 + MIR SINE MIR 16 154 -65 301 350 169 25 chr9 19306868 19307222 -98555405 + L2 LINE L2 2806 3210 -103 814 247 45 35 chr9 19307501 19307813 -98554814 - L1M3 LINE L1 -433 5750 5436 225 196 0 0 chr9 19309901 19309947 -98552680 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 301 220 50 40 chr9 19310747 19310847 -98551780 + MIR SINE MIR 147 247 -15 375 320 8 8 chr9 19311181 19311309 -98551318 - MIR SINE MIR -13 249 122 204 364 0 11 chr9 19311367 19311455 -98551172 - MIR SINE MIR -155 107 21 563 227 121 42 chr9 19311577 19311762 -98550865 - MIR SINE MIR -55 153 9 2464 78 0 3 chr9 19313161 19313468 -98549159 - AluSc SINE Alu -3 306 1 23 54 0 0 chr9 19316612 19316649 -98545978 + AT_rich Low_complexity Low_complexity 1 37 0 652 259 210 27 chr9 19319502 19319918 -98542709 - MLT1D LTR MaLR 0 505 1 2102 142 132 5 chr9 19319976 19320356 -98542271 - MSTA LTR MaLR 0 428 1 3426 274 193 40 chr9 19320665 19322519 -98540108 + L2 LINE L2 810 2945 -369 418 198 123 19 chr9 19322912 19323018 -98539609 + MIR3 SINE MIR 81 197 -11 425 354 113 46 chr9 19326129 19327100 -98535527 - L2 LINE L2 0 3272 2243 346 80 0 0 chr9 19327117 19327167 -98535460 - L1PA3 LINE L1 -3 6152 6103 228 67 0 0 chr9 19327167 19327197 -98535430 + (A)n Simple_repeat Simple_repeat 1 30 0 1204 186 6 13 chr9 19328171 19328504 -98534123 - MLT1A1 LTR MaLR 0 365 2 1091 150 45 37 chr9 19328513 19328779 -98533848 + L1MB4 LINE L1 5899 6156 -10 1645 166 9 77 chr9 19329370 19329696 -98532931 - AluJo SINE Alu -8 304 1 2449 142 59 10 chr9 19330182 19330590 -98532037 - MSTA LTR MaLR 0 428 1 8952 25 0 0 chr9 19330603 19332434 -98530193 + L1PA3 LINE L1 4325 6155 0 510 17 0 0 chr9 19332507 19332566 -98530061 + (TG)n Simple_repeat Simple_repeat 2 60 0 779 197 7 20 chr9 19332601 19332753 -98529874 - AluJo SINE Alu -162 150 1 1125 213 90 54 chr9 19332753 19333344 -98529283 + MER114 LTR ERV 37 648 0 194 192 0 14 chr9 19333581 19333654 -98528973 + (TA)n Simple_repeat Simple_repeat 1 72 0 375 23 0 0 chr9 19333759 19333803 -98528824 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 330 55 0 chr9 19335356 19335447 -98527180 - MIR SINE MIR -91 171 76 1816 140 47 4 chr9 19336384 19336663 -98525964 - AluSx SINE Alu -21 291 1 21 0 0 0 chr9 19336808 19336829 -98525798 + AT_rich Low_complexity Low_complexity 1 21 0 46 0 0 0 chr9 19336962 19337008 -98525619 + AT_rich Low_complexity Low_complexity 1 46 0 236 207 16 17 chr9 19337089 19337166 -98525461 - L1ME LINE L1 -297 5824 5745 397 236 0 47 chr9 19337173 19337279 -98525348 - LTR33 LTR ERVL 0 521 421 428 282 82 24 chr9 19337566 19337736 -98524891 - LTR33 LTR ERVL -327 194 15 312 313 106 43 chr9 19337748 19337956 -98524671 - L1ME LINE L1 -380 5741 5521 259 224 41 41 chr9 19337979 19338077 -98524550 - L1ME LINE L1 -2337 5471 5374 432 193 79 14 chr9 19338137 19338277 -98524350 - L1ME LINE L1 -824 5322 5174 1480 197 59 3 chr9 19338315 19338604 -98524023 - AluJo SINE Alu -7 305 1 902 150 0 0 chr9 19338623 19338756 -98523871 - FLAM_C SINE Alu 0 133 1 323 102 0 0 chr9 19339100 19339149 -98523478 - AluJb SINE Alu -7 294 246 1035 124 0 62 chr9 19339151 19339329 -98523298 - AluJb SINE Alu -145 167 1 264 122 0 0 chr9 19339406 19339447 -98523180 + (TCC)n Simple_repeat Simple_repeat 3 43 0 438 276 53 0 chr9 19339929 19340081 -98522546 + L1MD2 LINE L1 5612 5771 -2037 646 175 70 70 chr9 19340234 19340434 -98522193 - MLT1H1 LTR MaLR 0 590 356 770 250 39 125 chr9 19340494 19340896 -98521731 - MLT1H1 LTR MaLR -214 376 7 1293 214 18 0 chr9 19341943 19342218 -98520409 + Tigger7 DNA MER2_type 2 281 -452 890 176 33 0 chr9 19342214 19342396 -98520231 + Tigger7 DNA MER2_type 2300 2487 0 * 456 203 102 17 chr9 19343143 19343261 -98519366 - MLT1H1 LTR MaLR -421 134 7 1251 252 106 7 chr9 19344087 19344512 -98518115 + MLT1C LTR MaLR 1 467 0 2164 133 10 0 chr9 19345934 19346243 -98516384 - AluSx SINE Alu 0 312 1 1095 291 74 25 chr9 19346448 19346933 -98515694 - MLT1J LTR MaLR 0 511 3 213 361 62 8 chr9 19347043 19347173 -98515454 - L2 LINE L2 -2 3270 3134 214 273 0 0 chr9 19347309 19347353 -98515274 + L2 LINE L2 3209 3252 -20 338 278 118 14 chr9 19347596 19347740 -98514887 + MIR SINE MIR 28 186 -76 2220 106 0 7 chr9 19347746 19348038 -98514589 - AluSp SINE Alu -23 290 1 315 290 89 8 chr9 19349663 19349787 -98512840 - L1MC4 LINE L1 -1 8041 7908 21 0 0 0 chr9 19350463 19350484 -98512143 + AT_rich Low_complexity Low_complexity 1 21 0 1867 197 67 25 chr9 19350850 19351281 -98511346 + L1MD2 LINE L1 5904 6352 -7 761 166 0 102 chr9 19351347 19351557 -98511070 - AluSg/x SINE Alu 0 305 115 334 278 113 36 chr9 19352788 19352982 -98509645 - L1ME3A LINE L1 0 6170 5962 611 241 48 63 chr9 19353191 19353506 -98509121 - L1MC5 LINE L1 -758 7203 6894 270 301 48 36 chr9 19353514 19353680 -98508947 - L1MC4 LINE L1 -1197 6845 6678 363 297 120 29 chr9 19353933 19354108 -98508519 - MIR SINE MIR 0 262 72 21 0 0 0 chr9 19354939 19354960 -98507667 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 19357392 19357414 -98505213 + AT_rich Low_complexity Low_complexity 1 22 0 256 346 37 9 chr9 19358213 19358320 -98504307 + L2 LINE L2 2943 3052 -220 22 35 0 0 chr9 19359300 19359329 -98503298 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr9 19359548 19359578 -98503049 + AT_rich Low_complexity Low_complexity 1 30 0 990 114 43 22 chr9 19359579 19359763 -98502864 - L1MA9 LINE L1 0 7272 7085 8813 35 0 26 chr9 19359786 19361682 -98500945 - L1PA4 LINE L1 -3 6152 4287 3051 35 0 0 chr9 19361682 19362049 -98500578 + L1PA4 LINE L1 3926 4292 -1854 * 8922 174 31 52 chr9 19362045 19362914 -98499713 - L1MA9 LINE L1 -173 7099 6213 1630 198 70 6 chr9 19362914 19363257 -98499370 - MLT1A1 LTR MaLR 0 365 1 8922 174 31 52 chr9 19363257 19365360 -98497267 - L1MA9 LINE L1 -1059 6213 4194 281 266 0 0 chr9 19365357 19365421 -98497206 - L1MA9 LINE L1 -3409 3697 3634 * 2502 258 81 38 chr9 19365423 19367961 -98494666 - L1MA9 LINE L1 -3445 3661 5 267 237 105 42 chr9 19367970 19368160 -98494467 - L1MEd LINE L1 -5023 1096 895 1409 215 21 48 chr9 19368180 19368376 -98494251 + MLT1A1 LTR MaLR 4 187 -178 1654 170 77 70 chr9 19368376 19368805 -98493822 - MSTB1 LTR MaLR 0 432 1 1409 215 21 48 chr9 19368805 19368980 -98493647 + MLT1A1 LTR MaLR 187 365 0 390 335 52 18 chr9 19369061 19369333 -98493294 - L1MEd LINE L1 -5312 807 527 2152 113 3 0 chr9 19369982 19370274 -98492353 + AluSg SINE Alu 1 293 -17 351 263 123 9 chr9 19370547 19370661 -98491966 - MER5B DNA MER1_type 0 178 52 2418 81 0 3 chr9 19370710 19371019 -98491608 - AluSc SINE Alu -1 308 1 286 216 0 0 chr9 19371029 19371080 -98491547 + MER5B DNA MER1_type 127 177 -1 228 237 229 8 chr9 19371848 19371966 -98490661 - L1ME4a LINE L1 -2 6119 5976 294 235 145 42 chr9 19372177 19372343 -98490284 - L1ME4a LINE L1 -379 5742 5560 183 367 122 15 chr9 19372497 19372693 -98489934 + MIR SINE MIR 46 262 0 301 301 12 0 chr9 19373344 19373427 -98489200 - MIR3 SINE MIR -17 191 108 200 328 0 16 chr9 19373498 19373562 -98489065 - MIR SINE MIR -57 151 89 24 0 0 0 chr9 19376164 19376188 -98486439 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr9 19376198 19376225 -98486402 + (T)n Simple_repeat Simple_repeat 1 27 0 384 200 215 68 chr9 19376509 19376714 -98485913 - MER106A DNA MER1_type -1 235 1 595 283 154 47 chr9 19376761 19377447 -98485180 - L1ME4a LINE L1 -2 6119 5360 25 0 0 0 chr9 19380051 19380076 -98482551 + AT_rich Low_complexity Low_complexity 1 25 0 325 205 9 77 chr9 19380169 19380385 -98482242 + AluJo SINE Alu 25 289 -13 188 188 424 24 chr9 19380410 19380495 -98482132 - MIR SINE MIR -97 165 47 279 0 0 0 chr9 19381741 19381772 -98480855 + (TG)n Simple_repeat Simple_repeat 2 32 0 693 313 57 8 chr9 19383444 19383690 -98478937 + MIR SINE MIR 5 262 0 23 33 0 0 chr9 19383809 19383839 -98478788 + AT_rich Low_complexity Low_complexity 1 30 0 6070 10 0 0 chr9 19387256 19387941 -98474686 - L1PA2 LINE L1 -2 6153 5469 251 352 34 50 chr9 19388580 19388759 -98473868 - MLT1K LTR MaLR -411 177 2 343 300 63 89 chr9 19389058 19389405 -98473222 - L2 LINE L2 -87 3185 2848 515 269 152 5 chr9 19389960 19390157 -98472470 + MIR SINE MIR 37 262 0 327 247 14 0 chr9 19390282 19390355 -98472272 + MIR SINE MIR 141 214 -48 * 477 325 76 21 chr9 19390347 19390584 -98472043 - MIR SINE MIR -11 251 2 225 234 0 21 chr9 19390692 19390739 -98471888 + MIR SINE MIR 47 92 -170 453 348 49 46 chr9 19392568 19392913 -98469714 - L2 LINE L2 0 3272 2927 307 270 197 24 chr9 19393005 19393213 -98469414 - MIR SINE MIR -14 248 3 1542 207 115 0 chr9 19393700 19394091 -98468536 + MER63B DNA MER1_type 1 436 0 203 304 51 13 chr9 19394121 19394200 -98468427 + L2 LINE L2 3191 3272 0 377 195 0 102 chr9 19394252 19394380 -98468247 + MIR3 SINE MIR 88 202 -6 189 345 0 0 chr9 19395200 19395255 -98467372 + MIR3 SINE MIR 118 172 -36 455 315 82 18 chr9 19396163 19396442 -98466185 - MLT1I LTR MaLR -39 370 74 210 140 20 40 chr9 19396854 19396904 -98465723 + CT-rich Low_complexity Low_complexity 3 51 0 277 259 0 94 chr9 19397082 19397167 -98465460 + L2 LINE L2 3185 3261 -11 26 30 0 0 chr9 19398565 19398598 -98464029 + AT_rich Low_complexity Low_complexity 1 33 0 380 279 97 32 chr9 19399323 19399477 -98463150 - MIR3 SINE MIR -18 190 27 293 297 149 15 chr9 19402675 19402870 -98459757 - MIR SINE MIR -6 256 36 371 332 58 10 chr9 19403158 19403363 -98459264 - MIR SINE MIR -14 248 34 541 279 73 0 chr9 19403381 19403546 -98459081 - MER5B DNA MER1_type 0 178 2 397 291 89 11 chr9 19404614 19404793 -98457834 - MER117 DNA MER1_type -3 194 2 681 292 15 0 chr9 19405641 19405843 -98456784 + MER58C DNA MER1_type 11 215 0 217 294 130 0 chr9 19405881 19405973 -98456654 - MIR SINE MIR 0 262 159 875 263 95 99 chr9 19405973 19406509 -98456118 + MLT1F LTR MaLR 1 534 -8 882 254 57 35 chr9 19406514 19406993 -98455634 + MLT1F-int LTR MaLR 1 601 -770 318 292 193 16 chr9 19407205 19407397 -98455230 + MLT1F-int LTR MaLR 659 884 -487 249 294 7 96 chr9 19407500 19407646 -98454981 + MLT1F-int LTR MaLR 963 1095 -276 597 226 244 78 chr9 19407909 19408179 -98454448 + MLT1F1 LTR MaLR 72 386 -181 875 162 73 17 chr9 19408191 19408370 -98454257 - THE1C LTR MaLR -186 189 1 553 270 62 6 chr9 19408636 19408814 -98453813 + MER5A DNA MER1_type 1 188 -1 214 286 36 36 chr9 19409841 19409925 -98452702 + MIR SINE MIR 20 103 -105 188 184 0 0 chr9 19410454 19410492 -98452135 - L2 LINE L2 -4 3309 3272 189 147 0 0 chr9 19410620 19410654 -98451973 + (TCTCCC)n Simple_repeat Simple_repeat 6 39 0 1048 150 23 6 chr9 19410844 19411017 -98451610 - MER5A DNA MER1_type -8 181 6 12751 212 47 8 chr9 19411911 19416197 -98446430 - L1PA16 LINE L1 -3 6865 2415 6090 32 8 0 chr9 19416192 19416935 -98445692 - L1PA4 LINE L1 -1269 4877 4129 * 7565 25 1 8 chr9 19416936 19418219 -98444408 + L1PA4 LINE L1 4879 6155 0 2526 237 28 43 chr9 19418220 19419099 -98443528 - L1PA16 LINE L1 -4425 2423 1474 351 359 77 41 chr9 19419955 19420125 -98442502 - L1M2 LINE L1 -5902 947 772 1004 365 27 26 chr9 19420125 19420711 -98441916 - L1PA16 LINE L1 -6200 638 52 26 30 0 0 chr9 19420724 19420757 -98441870 + AT_rich Low_complexity Low_complexity 1 33 0 615 199 48 7 chr9 19420899 19421045 -98441582 + L1MA7 LINE L1 6140 6291 0 27 29 0 0 chr9 19422729 19422763 -98439864 + AT_rich Low_complexity Low_complexity 1 34 0 818 287 32 59 chr9 19423130 19423503 -98439124 + L2 LINE L2 2946 3308 -5 442 331 71 52 chr9 19423514 19423822 -98438805 - L2 LINE L2 -4 3268 2955 21 0 0 0 chr9 19427443 19427464 -98435163 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 19428594 19428623 -98434004 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 19429601 19429622 -98433005 + AT_rich Low_complexity Low_complexity 1 21 0 385 295 71 64 chr9 19430014 19430251 -98432376 - MIR SINE MIR -13 249 10 288 363 53 18 chr9 19430751 19430922 -98431705 + MER5B DNA MER1_type 1 177 -1 378 137 82 0 chr9 19431128 19431201 -98431426 - MADE1 DNA Mariner 0 80 2 235 167 21 21 chr9 19431714 19431762 -98430865 - L2 LINE L2 -11 3302 3255 220 367 0 44 chr9 19432414 19432504 -98430123 - MIR SINE MIR -106 102 17 328 329 12 31 chr9 19432650 19432811 -98429816 + MIR3 SINE MIR 15 172 -36 1013 241 151 28 chr9 19433945 19434264 -98428363 - MLT1J LTR MaLR -153 358 1 277 343 76 21 chr9 19434341 19434534 -98428093 - MIR SINE MIR -27 235 33 455 234 203 66 chr9 19434785 19434921 -98427706 - LTR50 LTR ERVL -11 784 668 1130 200 24 5 chr9 19434921 19435131 -98427496 + MER20 DNA MER1_type 2 215 -4 455 234 203 66 chr9 19435131 19435297 -98427330 - LTR50 LTR ERVL -127 668 359 328 312 181 0 chr9 19435467 19435704 -98426923 - L2 LINE L2 -934 2380 2101 961 112 26 164 chr9 19436038 19436306 -98426321 + L1MC3 LINE L1 7548 7778 -7 1705 179 84 48 chr9 19436482 19436924 -98425703 - MLT1C LTR MaLR -9 458 1 663 269 132 64 chr9 19436947 19437268 -98425359 + MLT1L LTR MaLR 162 520 -95 2418 85 0 0 chr9 19437268 19437574 -98425053 - AluY SINE Alu -5 306 1 663 269 132 64 chr9 19437574 19437676 -98424951 + MLT1L LTR MaLR 520 614 -1 2337 79 0 0 chr9 19438671 19438962 -98423665 + AluY SINE Alu 1 291 -20 23 33 0 0 chr9 19439189 19439219 -98423408 + AT_rich Low_complexity Low_complexity 1 30 0 581 310 60 25 chr9 19439853 19440137 -98422490 - L2 LINE L2 -93 3220 2927 253 309 112 13 chr9 19440165 19440317 -98422310 + MIR SINE MIR 32 198 -64 230 288 0 50 chr9 19441348 19441428 -98421199 - L2 LINE L2 0 3313 3238 258 281 0 0 chr9 19441784 19441848 -98420779 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 459 309 25 35 chr9 19442166 19442367 -98420260 - MIR SINE MIR -7 255 57 633 280 86 75 chr9 19445268 19445705 -98416922 + L2 LINE L2 2784 3222 -50 198 231 0 0 chr9 19445747 19445812 -98416815 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 201 315 0 33 chr9 19449047 19449139 -98413488 + MIR SINE MIR 117 205 -57 21 0 0 0 chr9 19450062 19450083 -98412544 + AT_rich Low_complexity Low_complexity 1 21 0 1341 197 0 68 chr9 19450696 19450991 -98411636 + AluJo SINE Alu 2 276 -36 24 32 0 0 chr9 19452416 19452447 -98410180 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr9 19452603 19452637 -98409990 + (T)n Simple_repeat Simple_repeat 1 34 0 1040 269 76 7 chr9 19453038 19453347 -98409280 + MER113 DNA MER1_type? 7 358 -163 2491 70 0 16 chr9 19453347 19453663 -98408964 + AluSx SINE Alu 1 311 -1 1040 269 76 7 chr9 19453663 19453799 -98408828 + MER113 DNA MER1_type? 358 483 -38 3461 36 10 0 chr9 19454378 19454795 -98407832 + L1PA3 LINE L1 5735 6155 0 623 314 87 13 chr9 19454796 19455025 -98407602 + MIR SINE MIR 9 254 -8 803 309 74 13 chr9 19455363 19455741 -98406886 + L3b LINE CR1 1115 1515 -68 1182 218 67 27 chr9 19455869 19456200 -98406427 - MER2 DNA MER2_type 0 344 1 645 327 80 40 chr9 19456354 19456681 -98405946 - L2 LINE L2 -1 3271 2932 877 173 109 12 chr9 19456763 19457011 -98405616 + MER33 DNA MER1_type 31 302 -22 626 255 90 19 chr9 19457013 19457050 -98405577 + MER112 DNA MER1_type 29 62 -198 207 100 0 0 chr9 19457050 19457080 -98405547 + (CATA)n Simple_repeat Simple_repeat 3 32 0 626 255 90 19 chr9 19457080 19457254 -98405373 + MER112 DNA MER1_type 62 255 -5 261 299 267 58 chr9 19457324 19457939 -98404688 - L2 LINE L2 -589 2725 1983 2126 137 0 6 chr9 19462118 19462529 -98400098 - AluSq SINE Alu 0 409 1 183 250 26 9 chr9 19462647 19462763 -98399864 + CT-rich Low_complexity Low_complexity 3 120 0 297 336 143 41 chr9 19463930 19464344 -98398283 - L2 LINE L2 0 3313 2858 1579 306 146 41 chr9 19464446 19465814 -98396813 - L2 LINE L2 -600 2714 1204 2172 73 3 18 chr9 19467039 19467384 -98395243 + AluY SINE Alu 1 341 0 736 307 137 30 chr9 19467462 19468023 -98394604 - L2 LINE L2 -2235 1079 459 218 299 10 62 chr9 19468132 19468229 -98394398 + MIR SINE MIR 19 110 -98 239 264 114 54 chr9 19468309 19468460 -98394167 - MIR SINE MIR -62 146 2 25 31 0 0 chr9 19469379 19469411 -98393216 + AT_rich Low_complexity Low_complexity 1 32 0 1281 145 5 10 chr9 19469976 19470169 -98392458 - AluSq SINE Alu -39 274 83 2464 99 0 0 chr9 19471880 19472192 -98390435 + AluSx SINE Alu 1 312 0 351 154 0 0 chr9 19472293 19472358 -98390269 + CT-rich Low_complexity Low_complexity 1 65 0 1052 312 111 5 chr9 19472382 19472864 -98389763 - L2 LINE L2 -39 3274 2742 843 259 49 0 chr9 19472882 19473087 -98389540 + MIR SINE MIR 39 253 -9 336 234 0 24 chr9 19473093 19473217 -98389410 + (TA)n Simple_repeat Simple_repeat 2 122 0 399 220 0 58 chr9 19473232 19473423 -98389204 + (TA)n Simple_repeat Simple_repeat 1 180 0 1044 283 111 8 chr9 19473463 19473823 -98388804 - L2 LINE L2 -611 2703 2307 22 0 0 0 chr9 19475126 19475148 -98387479 + AT_rich Low_complexity Low_complexity 1 22 0 2880 194 25 8 chr9 19475616 19476712 -98385915 + L1MB1 LINE L1 4709 5827 -341 675 144 0 0 chr9 19476712 19476823 -98385804 + AluSp/q SINE Alu 201 311 -2 380 42 0 0 chr9 19476824 19476872 -98385755 - L1P LINE L1 -2464 3682 3635 3071 65 18 0 chr9 19476872 19477263 -98385364 + L1PA7 LINE L1 5748 6153 -1 1409 153 67 0 chr9 19477265 19477547 -98385080 + L1MB1 LINE L1 5847 6147 -21 3443 151 54 11 chr9 19477717 19478417 -98384210 + L1MB3 LINE L1 5451 6180 -3 351 65 0 0 chr9 19478693 19478739 -98383888 + (TG)n Simple_repeat Simple_repeat 2 47 0 384 335 35 29 chr9 19479183 19479353 -98383274 + MIR SINE MIR 1 171 -91 500 333 58 61 chr9 19479745 19480039 -98382588 - L2 LINE L2 -6 3266 2974 261 180 60 0 chr9 19481856 19481906 -98380721 - MIR SINE MIR -113 149 97 1584 120 0 30 chr9 19482274 19482508 -98380119 - AluSc SINE Alu -82 227 1 391 240 29 10 chr9 19482696 19482800 -98379827 + MER5A DNA MER1_type 4 109 -80 2315 105 0 3 chr9 19483055 19483359 -98379268 - AluSx SINE Alu -2 310 8 747 250 22 0 chr9 19483387 19483567 -98379060 - L1MC5 LINE L1 -1144 6817 6634 484 194 46 19 chr9 19484028 19484136 -98378491 + MER3 DNA MER1_type 1 111 -98 657 227 70 38 chr9 19484285 19484579 -98378048 - L1ME2 LINE L1 -11 6153 5840 * 1897 239 81 59 chr9 19484576 19485476 -98377151 - L1ME2 LINE L1 -10 6223 5306 1345 247 89 6 chr9 19485501 19486364 -98376263 - L1ME2 LINE L1 -1024 5191 4197 399 358 44 21 chr9 19486374 19486712 -98375915 - L1ME2 LINE L1 -6015 381 36 545 424 67 54 chr9 19486771 19486968 -98375659 - HAL1b LINE L1 -796 552 359 252 0 0 0 chr9 19486968 19486996 -98375631 + (TA)n Simple_repeat Simple_repeat 2 29 0 545 424 67 54 chr9 19486996 19487279 -98375348 - HAL1b LINE L1 -989 359 66 2167 83 42 0 chr9 19487290 19487578 -98375049 - AluY SINE Alu -11 300 1 943 146 0 0 chr9 19487940 19488077 -98374550 - AluJb SINE Alu -19 293 157 2134 125 0 10 chr9 19488868 19489180 -98373447 + AluSg SINE Alu 1 309 -1 208 214 0 0 chr9 19491420 19491462 -98371165 - MIR3 SINE MIR -15 193 152 259 278 11 0 chr9 19491588 19491678 -98370949 - MER103 DNA DNA -70 96 6 223 320 152 8 chr9 19491758 19491883 -98370744 - MIR3 SINE MIR -50 158 16 1368 149 0 0 chr9 19492175 19492390 -98370237 + L1PB4 LINE L1 5928 6142 -14 559 303 49 0 chr9 19492716 19492901 -98369726 + MIR3 SINE MIR 15 208 0 1893 169 3 0 chr9 19495849 19496151 -98366476 - AluJb SINE Alu -9 303 1 180 306 28 56 chr9 19499734 19499806 -98362821 - L2 LINE L2 0 3272 3203 464 333 89 22 chr9 19499947 19500262 -98362365 + LTR16C LTR ERVL 156 491 0 384 301 87 40 chr9 19500349 19500522 -98362105 + L2 LINE L2 3125 3305 -8 201 326 47 47 chr9 19500583 19500669 -98361958 - MIR SINE MIR -104 104 19 215 226 16 16 chr9 19501345 19501407 -98361220 - MIR SINE MIR -10 252 191 581 188 56 69 chr9 19501465 19501609 -98361018 - MIR SINE MIR -64 198 57 242 347 158 16 chr9 19501686 19501876 -98360751 - L2 LINE L2 -1235 2079 1863 560 246 0 168 chr9 19503220 19503517 -98359110 - MIR SINE MIR -7 255 9 972 56 0 0 chr9 19504370 19504496 -98358131 - L1PA4 LINE L1 -3 6152 6027 1836 265 110 14 chr9 19504498 19505453 -98357174 + L2 LINE L2 2274 3312 -1 613 255 176 5 chr9 19506621 19506809 -98355818 + MIR SINE MIR 1 220 -42 2017 103 3 36 chr9 19506935 19507236 -98355391 - AluSx SINE Alu -4 308 18 1658 224 88 31 chr9 19507620 19508133 -98354494 - MLT1F LTR MaLR 0 542 1 247 262 48 48 chr9 19509152 19509339 -98353288 - L1ME4a LINE L1 -1 6120 5934 369 216 80 24 chr9 19509495 19509620 -98353007 - L1MB7 LINE L1 -100 6084 5953 386 138 0 0 chr9 19509621 19509686 -98352941 + L1MB7 LINE L1 5884 5948 -226 644 203 73 0 chr9 19509782 19509959 -98352668 + L1M4 LINE L1 5599 5788 -396 1442 183 0 4 chr9 19510459 19510689 -98351938 - AluJb SINE Alu -83 229 1 1069 204 44 11 chr9 19511234 19511504 -98351123 - L1MB7 LINE L1 0 6184 5906 1442 176 68 23 chr9 19511508 19511727 -98350900 - L1MB7 LINE L1 -582 5592 5384 2230 109 0 3 chr9 19511727 19512029 -98350598 - AluSc SINE Alu -7 302 2 1442 176 68 23 chr9 19512029 19512248 -98350379 - L1MB7 LINE L1 -790 5384 5138 2264 130 8 24 chr9 19512710 19513080 -98349547 - THE1B LTR MaLR 0 364 1 1379 187 16 13 chr9 19513080 19513390 -98349237 - L1MB7 LINE L1 -998 5148 4838 272 350 10 10 chr9 19513525 19513625 -98349002 + MIR SINE MIR 8 107 -155 240 250 56 0 chr9 19513730 19513802 -98348825 + MIR SINE MIR 114 189 -73 305 258 75 0 chr9 19513842 19513935 -98348692 - L1ME3A LINE L1 -17 6153 6054 412 18 35 0 chr9 19515128 19515185 -98347442 + (CA)n Simple_repeat Simple_repeat 2 60 0 1241 160 213 4 chr9 19516024 19516268 -98346359 - AluJb SINE Alu -17 295 1 335 369 35 0 chr9 19516965 19517106 -98345521 - MIR3 SINE MIR -23 185 40 225 270 79 0 chr9 19517355 19517418 -98345209 + L3 LINE CR1 1503 1570 -7 195 250 204 68 chr9 19519422 19519554 -98343073 + MIR3 SINE MIR 16 165 -43 607 136 27 0 chr9 19519998 19520108 -98342519 - L1MB4 LINE L1 -66 6114 6002 189 263 88 0 chr9 19521038 19521118 -98341509 - MIR SINE MIR 0 262 176 203 324 0 81 chr9 19521161 19521272 -98341355 - MER5B DNA MER1_type -1 177 76 532 178 22 0 chr9 19523172 19523262 -98339365 + FLAM_A SINE Alu 1 92 -50 262 254 45 27 chr9 19523369 19523479 -98339148 + (TATATG)n Simple_repeat Simple_repeat 3 114 0 503 312 65 39 chr9 19523566 19523808 -98338819 - MIR SINE MIR -11 251 9 489 283 22 60 chr9 19523874 19524058 -98338569 - MER5B DNA MER1_type -1 177 1 250 343 63 74 chr9 19524137 19524877 -98337750 - L2 LINE L2 -55 3217 2415 494 239 30 60 chr9 19525771 19525938 -98336689 + MIR SINE MIR 50 211 -51 374 333 85 12 chr9 19526677 19526842 -98335785 + MIR3 SINE MIR 31 207 -1 256 348 169 20 chr9 19527767 19527968 -98334659 - L2 LINE L2 0 3272 3042 2721 161 51 13 chr9 19527993 19528526 -98334101 - MER68 LTR ERV1 -9 553 1 283 227 125 11 chr9 19528804 19528892 -98333735 - L2 LINE L2 -20 3252 3155 254 341 77 35 chr9 19529558 19529767 -98332860 + MIR SINE MIR 40 261 -1 279 295 115 0 chr9 19530294 19530416 -98332211 - MIR SINE MIR -125 137 2 1959 118 14 0 chr9 19531911 19532225 -98330402 - AluSq SINE Alu 0 318 1 3397 188 75 30 chr9 19533242 19534367 -98328260 + L1MC3 LINE L1 4911 5306 -840 226 354 157 11 chr9 19534823 19535001 -98327626 + MIR SINE MIR 47 250 -12 396 281 44 37 chr9 19535667 19535802 -98326825 + L2 LINE L2 3178 3313 0 26 30 0 0 chr9 19536293 19536326 -98326301 + AT_rich Low_complexity Low_complexity 1 33 0 188 326 129 8 chr9 19536806 19536938 -98325689 - L2 LINE L2 -4 3268 3121 275 347 21 26 chr9 19536971 19537161 -98325466 - L2 LINE L2 -344 2970 2782 390 216 23 0 chr9 19537225 19537313 -98325314 + MER5A DNA MER1_type 17 106 -83 944 347 111 34 chr9 19537406 19538680 -98323947 - L2 LINE L2 -587 2727 1356 466 314 46 31 chr9 19539697 19539891 -98322736 - MIR SINE MIR -34 228 32 231 304 194 36 chr9 19540101 19540493 -98322134 - L2 LINE L2 -1071 2243 1790 527 327 98 31 chr9 19540520 19540847 -98321780 - L3 LINE CR1 -316 1261 913 394 321 164 13 chr9 19540922 19541081 -98321546 + MIR3 SINE MIR 15 197 -11 320 298 40 32 chr9 19541108 19541232 -98321395 - L2 LINE L2 -1 3271 3147 692 245 130 12 chr9 19541894 19542147 -98320480 - MLT1H1 LTR MaLR 0 555 273 1288 127 75 0 chr9 19543142 19543354 -98319273 - MER30 DNA MER1_type -1 229 2 938 262 76 60 chr9 19543534 19543980 -98318647 - LTR16B LTR ERVL -6 458 6 270 95 0 0 chr9 19544307 19544349 -98318278 + (CA)n Simple_repeat Simple_repeat 1 42 0 1548 195 6 29 chr9 19548336 19548354 -98314273 - AluJo SINE Alu -6 306 289 234 0 0 0 chr9 19548354 19548380 -98314247 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1548 195 6 29 chr9 19548380 19548674 -98313953 - AluJo SINE Alu -23 289 1 195 253 12 48 chr9 19549469 19549552 -98313075 + L3b LINE CR1 1311 1390 -193 916 166 86 140 chr9 19549656 19550120 -98312507 - MLT1E3 LTR MaLR 0 624 67 464 279 107 0 chr9 19550578 19550718 -98311909 - MIR SINE MIR 0 262 108 406 291 119 0 chr9 19550841 19550975 -98311652 + MIR SINE MIR 32 181 -81 7699 34 2 0 chr9 19555805 19557511 -98305116 - L1PA4 LINE L1 0 6155 4454 227 250 193 0 chr9 19557987 19558075 -98304552 - MIR SINE MIR -20 242 138 355 248 43 8 chr9 19558630 19558747 -98303880 + L1MC4a LINE L1 4459 4579 -1567 326 279 149 0 chr9 19558748 19558902 -98303725 + L1MC4a LINE L1 4668 4844 -1302 273 263 54 73 chr9 19559046 19559251 -98303376 + L1MC4a LINE L1 5083 5283 -863 * 3244 69 5 0 chr9 19559249 19559681 -98302946 - L1P LINE L1 -876 5270 4837 2152 68 10 0 chr9 19559681 19559973 -98302654 + L1PA7 LINE L1 5858 6154 0 871 288 77 17 chr9 19559990 19560506 -98302121 + L1MC4a LINE L1 5295 5808 -354 317 312 29 65 chr9 19562821 19562959 -98299668 + MIR3 SINE MIR 64 196 -12 207 0 0 0 chr9 19563755 19563778 -98298849 + (A)n Simple_repeat Simple_repeat 1 23 0 354 276 14 14 chr9 19564042 19564187 -98298440 + (TAA)n Simple_repeat Simple_repeat 1 145 0 180 311 236 14 chr9 19564198 19564346 -98298281 - MIR SINE MIR -1 261 81 207 307 79 70 chr9 19564393 19564507 -98298120 - L2 LINE L2 -4 3268 3154 808 264 146 65 chr9 19565154 19565627 -98297000 - MLT1J LTR MaLR 0 511 1 17469 45 58 3 chr9 19565757 19567996 -98294631 + L1PA3 LINE L1 1 2363 -3783 2757 20 0 0 chr9 19567996 19568300 -98294327 + AluYa5 SINE Alu 1 304 -7 8087 34 0 1 chr9 19568300 19570044 -98292583 + L1PA3 LINE L1 4411 6153 -2 339 158 118 13 chr9 19570048 19570124 -98292503 + L1MB7 LINE L1 6061 6144 -40 462 344 8 0 chr9 19570481 19570612 -98292015 - MIR SINE MIR -130 132 1 252 297 58 58 chr9 19570629 19570767 -98291860 - MIR SINE MIR -96 166 29 2057 188 34 1 chr9 19570834 19571460 -98291167 + L1MC/D LINE L1 4849 5491 -744 317 221 0 0 chr9 19572719 19572787 -98289840 - Tigger4(Zombi) DNA MER2_type 0 2731 2664 1075 224 56 32 chr9 19572819 19573305 -98289322 + MLT1E LTR MaLR 1 593 0 330 67 0 0 chr9 19574577 19574622 -98288005 + (CA)n Simple_repeat Simple_repeat 2 46 0 217 222 0 0 chr9 19575475 19575520 -98287107 + GA-rich Low_complexity Low_complexity 4 48 0 319 279 127 19 chr9 19576565 19576723 -98285904 - MIR SINE MIR -13 249 75 23 0 0 0 chr9 19577298 19577321 -98285306 + AT_rich Low_complexity Low_complexity 1 23 0 220 274 0 16 chr9 19581213 19581275 -98281352 + CT-rich Low_complexity Low_complexity 1 61 0 374 240 96 0 chr9 19582765 19582869 -98279758 + MIR SINE MIR 149 262 0 348 239 179 16 chr9 19583089 19583273 -98279354 - MIR SINE MIR -29 233 20 728 275 94 43 chr9 19584406 19584863 -98277764 + L2 LINE L2 2776 3237 -76 5012 25 0 0 chr9 19584926 19585514 -98277113 - L1PA3 LINE L1 -1499 4647 4060 7840 17 0 0 chr9 19585516 19587014 -98275613 + L1PA3 LINE L1 4658 6155 0 24 53 0 0 chr9 19587092 19587130 -98275497 + AT_rich Low_complexity Low_complexity 1 38 0 768 182 0 15 chr9 19587892 19588024 -98274603 + FLAM_C SINE Alu 1 130 -3 21 57 0 0 chr9 19588474 19588509 -98274118 + AT_rich Low_complexity Low_complexity 1 35 0 564 330 28 14 chr9 19589440 19589658 -98272969 + MIR SINE MIR 5 225 -37 2167 124 38 27 chr9 19591895 19592266 -98270361 + THE1C LTR MaLR 1 375 0 236 260 177 10 chr9 19593284 19593380 -98269247 - MIR SINE MIR -131 131 20 2321 115 0 0 chr9 19593512 19593824 -98268803 + AluSx SINE Alu 1 312 0 261 0 0 0 chr9 19593983 19594012 -98268615 + (A)n Simple_repeat Simple_repeat 1 29 0 2241 121 0 3 chr9 19594808 19595115 -98267512 + AluSq SINE Alu 1 306 -7 180 273 0 0 chr9 19595132 19595198 -98267429 + GA-rich Low_complexity Low_complexity 1 66 0 363 262 43 27 chr9 19595219 19595389 -98267238 - MIR SINE MIR -3 259 38 454 302 98 51 chr9 19595872 19596107 -98266520 + MIR SINE MIR 17 262 0 652 270 56 0 chr9 19596476 19596654 -98265973 - MIR SINE MIR -36 226 39 235 303 40 13 chr9 19596845 19596921 -98265706 + MIR SINE MIR 107 184 -78 23 33 0 0 chr9 19598148 19598178 -98264449 + AT_rich Low_complexity Low_complexity 1 30 0 203 115 131 0 chr9 19598191 19598252 -98264375 + (TTAA)n Simple_repeat Simple_repeat 1 69 0 360 286 127 24 chr9 19598566 19598779 -98263848 - L2 LINE L2 -15 3298 3064 197 347 14 0 chr9 19599971 19600043 -98262584 - L2 LINE L2 -344 2970 2898 1964 102 31 20 chr9 19601490 19601784 -98260843 - AluSx SINE Alu -15 297 1 21 36 0 0 chr9 19601969 19601997 -98260630 + AT_rich Low_complexity Low_complexity 1 28 0 4166 242 75 16 chr9 19602084 19603492 -98259135 + Zaphod DNA AcHobo 2532 4022 -9 189 107 0 0 chr9 19604395 19604423 -98258204 + (T)n Simple_repeat Simple_repeat 1 28 0 569 256 95 18 chr9 19604570 19604738 -98257889 + MIR SINE MIR 1 181 -81 223 280 147 21 chr9 19604742 19604885 -98257742 - L2 LINE L2 -176 3137 2977 264 184 233 68 chr9 19604968 19605071 -98257556 - MIR SINE MIR -50 212 93 449 282 60 6 chr9 19606259 19606733 -98255894 - L1M LINE L1 -745 5419 4918 344 282 83 68 chr9 19606947 19607089 -98255538 - L1M4 LINE L1 -1501 4714 4576 1862 140 41 0 chr9 19607089 19607403 -98255224 - AluSx SINE Alu 0 325 1 344 282 83 68 chr9 19607403 19607774 -98254853 - L1M4 LINE L1 -1639 4576 4192 562 285 79 70 chr9 19607901 19608408 -98254219 - L1MEc LINE L1 -3546 2669 2198 1792 180 0 0 chr9 19608526 19608820 -98253807 - AluJb SINE Alu -18 294 1 427 302 54 15 chr9 19609036 19609241 -98253386 - L1MEc LINE L1 -4865 1340 1128 378 226 163 0 chr9 19609283 19609473 -98253154 - L1MEc LINE L1 -3106 3109 2889 328 287 56 46 chr9 19609493 19609991 -98252636 - L1MEc LINE L1 -3461 2754 2252 21 0 0 0 chr9 19610102 19610123 -98252504 + AT_rich Low_complexity Low_complexity 1 21 0 1118 211 0 4 chr9 19610541 19610778 -98251849 + MER46A DNA MER2_type 1 236 0 595 280 50 69 chr9 19610814 19611353 -98251274 - L1MEc LINE L1 -5041 1164 636 1178 197 56 85 chr9 19611529 19611904 -98250723 - MLT1A1 LTR MaLR -1 364 1 695 200 7 0 chr9 19611904 19612039 -98250588 - MLT1A1-int LTR MaLR 0 1735 1600 706 346 88 26 chr9 19613853 19614353 -98248274 + L3 LINE CR1 1046 1576 -1 2156 118 0 3 chr9 19614389 19614686 -98247941 - AluSq SINE Alu -17 296 1 211 367 75 37 chr9 19614686 19614874 -98247753 - L2 LINE L2 -8 3264 3070 284 339 72 32 chr9 19615011 19615232 -98247395 - L2 LINE L2 -222 3050 2821 3223 255 139 23 chr9 19615779 19617204 -98245423 + L2 LINE L2 1723 3311 -2 22 0 0 0 chr9 19617486 19617508 -98245119 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 19617844 19617865 -98244762 + AT_rich Low_complexity Low_complexity 1 21 0 309 321 28 9 chr9 19618096 19618202 -98244425 - L2 LINE L2 -4 3268 3161 582 285 108 81 chr9 19618450 19618931 -98243696 - L2 LINE L2 -561 2753 2260 195 341 146 39 chr9 19618940 19619145 -98243482 - MIR SINE MIR -6 256 30 2564 222 14 0 chr9 19619420 19619991 -98242636 - L1MC3 LINE L1 -2 7783 7205 257 237 0 79 chr9 19620169 19620245 -98242382 - MIR SINE MIR -114 148 79 1839 102 15 19 chr9 19620648 19620914 -98241713 - AluSg SINE Alu -45 265 1 248 202 169 34 chr9 19623035 19623124 -98239503 + MIR SINE MIR 99 199 -63 833 190 11 0 chr9 19623243 19623422 -98239205 - L1MA7 LINE L1 -10 6281 6101 11618 117 30 68 chr9 19623423 19623997 -98238630 - Tigger1 DNA MER2_type -3 2415 1821 1972 159 0 28 chr9 19623997 19624318 -98238309 + AluSx SINE Alu 1 312 0 11618 117 30 68 chr9 19624318 19625845 -98236782 - Tigger1 DNA MER2_type -597 1821 392 7287 201 38 4 chr9 19626150 19627817 -98234810 + L1 LINE L1 3217 4939 -1207 336 48 0 0 chr9 19628628 19628670 -98233957 + (TG)n Simple_repeat Simple_repeat 1 42 0 288 308 103 0 chr9 19628679 19628786 -98233841 + MER117 DNA MER1_type 53 170 -27 774 220 83 49 chr9 19630170 19630434 -98232193 - ORSL DNA AcHobo -2 273 1 815 197 14 0 chr9 19631888 19632030 -98230597 - FRAM SINE Alu -32 144 1 608 262 0 37 chr9 19682072 19682259 -98180368 - MIR SINE MIR -70 192 13 2335 81 19 23 chr9 19682260 19682569 -98180058 - AluSx SINE Alu -4 308 1 224 365 100 6 chr9 19682708 19682878 -98179749 - MIR SINE MIR 0 262 77 211 319 32 11 chr9 19683493 19683587 -98179040 + MIR SINE MIR 20 115 -147 381 277 109 0 chr9 19683648 19683767 -98178860 - MIR SINE MIR -78 184 53 221 91 0 0 chr9 19683942 19683975 -98178652 - MIR SINE MIR -113 149 117 1815 150 46 0 chr9 19684133 19684413 -98178214 + AluJb SINE Alu 1 293 -19 2433 83 3 0 chr9 19684413 19684713 -98177914 + AluSp SINE Alu 1 301 -12 680 230 79 82 chr9 19684802 19685093 -98177534 + AluYa5 SINE Alu 4 293 -8 486 271 36 85 chr9 19685170 19685451 -98177176 - L2 LINE L2 0 3272 3006 237 296 44 97 chr9 19685561 19685767 -98176860 + L2 LINE L2 2889 3083 -189 2028 108 42 11 chr9 19685784 19686070 -98176557 - AluSx SINE Alu -17 295 1 612 247 251 4 chr9 19686752 19686995 -98175632 + MLT1H LTR MaLR 247 549 0 895 145 0 0 chr9 19687044 19687182 -98175445 + FRAM SINE Alu 38 175 -1 273 207 43 128 chr9 19687186 19687255 -98175372 + L1MC4a LINE L1 5814 5887 -1921 2350 85 7 10 chr9 19687255 19687560 -98175067 + AluSg SINE Alu 1 304 -6 273 207 43 128 chr9 19687560 19687580 -98175047 + L1MC4a LINE L1 5887 5907 -1901 2265 101 3 13 chr9 19687580 19687887 -98174740 + AluSx SINE Alu 1 304 -8 273 207 43 128 chr9 19687887 19687960 -98174667 + L1MC4a LINE L1 5907 5963 -1845 2592 62 0 0 chr9 19688139 19688443 -98174184 - AluY SINE Alu -7 304 1 605 289 6 0 chr9 19689409 19689565 -98173062 + MER45A DNA AcHobo 2 158 -20 320 207 231 8 chr9 19689738 19689867 -98172760 + MIR SINE MIR 30 191 -62 341 264 35 56 chr9 19690162 19690306 -98172321 - L2 LINE L2 -57 3256 3116 232 268 0 92 chr9 19690433 19690575 -98172052 + MIR SINE MIR 60 188 -74 234 191 0 0 chr9 19690871 19690918 -98171709 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 213 39 0 0 chr9 19690922 19690948 -98171679 + (A)n Simple_repeat Simple_repeat 1 26 0 911 127 8 15 chr9 19690971 19691105 -98171522 + AluSq/x SINE Alu 1 133 -179 5700 153 33 11 chr9 19691120 19692303 -98170324 + L1MC2 LINE L1 5133 6343 -1 2281 96 7 7 chr9 19692351 19692652 -98169975 + AluSp SINE Alu 1 301 -12 1252 124 31 0 chr9 19693157 19693382 -98169245 - L1 LINE L1 -1657 4489 4258 296 267 14 0 chr9 19693534 19693613 -98169014 + MIR SINE MIR 81 161 -47 247 234 13 13 chr9 19693696 19693773 -98168854 - MIR SINE MIR -12 250 174 572 213 0 0 chr9 19693777 19693871 -98168756 - MER81 DNA DNA -1 113 20 297 167 91 0 chr9 19693884 19693950 -98168677 - MIR SINE MIR -111 151 80 329 306 62 14 chr9 19694542 19694686 -98167941 - MIR SINE MIR -110 152 2 188 284 122 34 chr9 19694693 19694841 -98167786 + MIR SINE MIR 76 236 -26 515 284 111 0 chr9 19694958 19695148 -98167479 - MIR SINE MIR -13 249 39 204 270 44 88 chr9 19695553 19695779 -98166848 - L2 LINE L2 -68 3204 2989 715 285 216 19 chr9 19697426 19698062 -98164565 - L2 LINE L2 -14 3299 2524 242 337 0 0 chr9 19698308 19698394 -98164233 - MIR SINE MIR -10 252 167 1982 166 63 44 chr9 19698523 19698674 -98163953 + L1MD2 LINE L1 5795 5942 -417 1947 137 7 14 chr9 19698674 19698992 -98163635 - AluSx SINE Alu 0 316 1 1982 166 63 44 chr9 19698992 19699184 -98163443 + L1MD2 LINE L1 5942 6129 -230 234 0 0 0 chr9 19699184 19699210 -98163417 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 261 0 0 0 chr9 19699209 19699238 -98163389 + (CA)n Simple_repeat Simple_repeat 1 29 0 1982 166 63 44 chr9 19699210 19699367 -98163260 + L1MD2 LINE L1 6129 6278 -81 608 116 26 71 chr9 19699367 19699522 -98163105 - MLT2B1 LTR ERVL 0 520 373 2306 104 0 0 chr9 19700060 19700349 -98162278 + AluSq SINE Alu 1 289 -24 24508 146 38 35 chr9 19700349 19704249 -98158378 - ERVL LTR ERVL -435 5329 1445 1468 184 17 109 chr9 19704249 19704651 -98157976 - MLT1A1 LTR MaLR 0 365 1 24508 146 38 35 chr9 19704651 19704737 -98157890 - ERVL LTR ERVL -4319 1445 1361 2172 128 6 13 chr9 19704737 19705049 -98157578 - AluSx SINE Alu -2 310 1 24508 146 38 35 chr9 19705049 19705071 -98157556 - ERVL LTR ERVL -4403 1361 1341 2463 99 0 3 chr9 19705071 19705383 -98157244 - AluSx SINE Alu -1 311 1 231 36 0 0 chr9 19705385 19705413 -98157214 + (TA)n Simple_repeat Simple_repeat 2 29 0 2160 70 38 28 chr9 19705413 19705700 -98156927 - AluY SINE Alu -21 290 1 300 116 130 0 chr9 19705700 19705769 -98156858 + Charlie5 DNA MER1_type 2510 2587 -25 2085 94 0 15 chr9 19705769 19706036 -98156591 - AluSq SINE Alu -50 263 1 24508 146 38 35 chr9 19706036 19707248 -98155379 - ERVL LTR ERVL -4422 1342 25 2036 59 0 0 chr9 19707249 19707486 -98155141 + AluY SINE Alu 1 237 -74 26 0 0 0 chr9 19707541 19707567 -98155060 + AT_rich Low_complexity Low_complexity 1 26 0 328 306 0 19 chr9 19707668 19707776 -98154851 - MIR SINE MIR -70 138 33 2241 109 0 0 chr9 19707780 19708094 -98154533 - AluSx SINE Alu 0 314 1 189 0 0 0 chr9 19708094 19708115 -98154512 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 570 128 0 0 chr9 19708125 19708203 -98154424 - FLAM_A SINE Alu -32 110 33 1661 179 133 96 chr9 19708661 19709400 -98153227 - L1MC5 LINE L1 -30 7931 7166 1038 172 6 0 chr9 19709402 19709565 -98153062 - AluJb SINE Alu -18 294 131 1295 186 55 133 chr9 19709565 19709794 -98152833 - L1MC5 LINE L1 -793 7168 6923 1779 134 34 41 chr9 19709794 19710085 -98152542 + AluJb SINE Alu 1 289 -23 1295 186 55 133 chr9 19710085 19710456 -98152171 - L1MC5 LINE L1 -1038 6923 6615 2606 143 66 75 chr9 19710478 19711115 -98151512 + L1MC2 LINE L1 5714 6344 0 229 254 0 15 chr9 19711111 19711178 -98151449 - L1MC4a LINE L1 -1213 6595 6530 * 1694 170 32 66 chr9 19711293 19711458 -98151169 - MLT1A1 LTR MaLR 0 365 196 1975 151 0 19 chr9 19711458 19711775 -98150852 + AluSx SINE Alu 1 311 -1 1694 170 32 66 chr9 19711775 19711986 -98150641 - MLT1A1 LTR MaLR -169 196 2 488 291 81 61 chr9 19712024 19712319 -98150308 - L1MC4a LINE L1 -1445 6363 6063 201 201 97 142 chr9 19712560 19712599 -98150028 - MIR SINE MIR -26 236 197 2109 139 0 0 chr9 19712599 19712900 -98149727 - AluSx SINE Alu -11 301 1 201 201 97 142 chr9 19712900 19712994 -98149633 - MIR SINE MIR -65 197 109 337 303 76 0 chr9 19713025 19713144 -98149483 - L2 LINE L2 0 3313 3186 292 204 51 10 chr9 19713399 19713497 -98149130 - L1ME4a LINE L1 -12 6109 6008 2140 129 3 16 chr9 19713500 19713830 -98148797 - AluSx SINE Alu 0 312 3 342 285 172 5 chr9 19714306 19714527 -98148100 + MIR SINE MIR 5 262 0 467 281 34 79 chr9 19714852 19714928 -98147699 + MIR SINE MIR 2 80 -128 1836 144 0 24 chr9 19714928 19715220 -98147407 - AluJb SINE Alu -22 290 6 467 281 34 79 chr9 19715220 19715350 -98147277 + MIR SINE MIR 80 201 -7 806 284 136 13 chr9 19715416 19715807 -98146820 + MLT1K LTR MaLR 148 586 -2 291 265 8 51 chr9 19715808 19715925 -98146702 + MIR SINE MIR 148 259 -3 546 276 186 69 chr9 19715934 19716002 -98146625 - L1ME4a LINE L1 -20 6101 6042 1855 151 47 27 chr9 19716002 19716301 -98146326 - AluJb SINE Alu -7 305 1 546 276 186 69 chr9 19716301 19716611 -98146016 - L1ME4a LINE L1 -79 6042 5770 234 0 0 0 chr9 19716611 19716637 -98145990 + (TA)n Simple_repeat Simple_repeat 1 26 0 1927 163 3 3 chr9 19716638 19716932 -98145695 - AluJo SINE Alu -10 302 9 546 276 186 69 chr9 19716932 19717002 -98145625 - L1ME4a LINE L1 -350 5771 5597 291 286 0 0 chr9 19717525 19717595 -98145032 + L1M4 LINE L1 4285 4354 -1792 291 278 118 42 chr9 19718298 19718442 -98144185 - MIR3 SINE MIR -37 171 17 317 316 107 8 chr9 19719021 19719223 -98143404 - MIR SINE MIR -20 242 16 316 269 11 32 chr9 19719371 19719464 -98143163 + MIR SINE MIR 84 174 -88 230 281 0 0 chr9 19719491 19719548 -98143079 + (TTA)n Simple_repeat Simple_repeat 2 58 0 199 351 0 27 chr9 19720118 19720192 -98142435 + L2 LINE L2 2686 2757 -557 191 366 204 5 chr9 19720212 19720403 -98142224 - MIR SINE MIR -8 254 26 303 299 35 40 chr9 19720675 19720849 -98141778 + L2 LINE L2 1677 1849 -1465 200 225 0 0 chr9 19721212 19721252 -98141375 + CT-rich Low_complexity Low_complexity 1 40 0 383 290 54 120 chr9 19721562 19721645 -98140982 + L2 LINE L2 2853 2940 -332 2239 128 3 0 chr9 19721645 19721949 -98140678 - AluSx SINE Alu -7 305 1 383 290 54 120 chr9 19721949 19722306 -98140321 + L2 LINE L2 2940 3264 -8 2381 110 0 0 chr9 19722328 19722629 -98139998 + AluSx SINE Alu 1 301 -11 277 173 120 0 chr9 19723660 19723735 -98138892 + MLT1K LTR MaLR 501 584 -4 452 283 145 31 chr9 19724520 19724556 -98138071 - MIR SINE MIR -18 244 213 2185 116 6 6 chr9 19724556 19724867 -98137760 - AluSx SINE Alu -1 311 1 452 283 145 31 chr9 19724867 19724989 -98137638 - MIR SINE MIR -49 213 68 1900 162 0 7 chr9 19725567 19725864 -98136763 + AluSx SINE Alu 1 295 -17 2499 109 11 16 chr9 19725883 19726249 -98136378 + THE1B LTR MaLR 1 364 0 573 88 0 0 chr9 19726585 19726665 -98135962 + (TA)n Simple_repeat Simple_repeat 1 80 0 420 294 56 56 chr9 19726674 19726926 -98135701 - L1M4 LINE L1 -3663 2483 2232 1178 185 4 53 chr9 19727185 19727448 -98135179 - AluJo SINE Alu 0 312 76 808 147 0 0 chr9 19727475 19727591 -98135036 - FLAM_C SINE Alu -17 116 1 297 277 45 18 chr9 19727642 19727754 -98134873 - L1ME3 LINE L1 -211 5934 5820 505 123 0 0 chr9 19727819 19727892 -98134735 - AluS SINE Alu -14 296 224 1249 266 75 102 chr9 19727899 19728378 -98134249 - L1ME3 LINE L1 -1158 4971 4481 2252 112 3 0 chr9 19728378 19728673 -98133954 - AluSq SINE Alu -12 301 6 1249 266 75 102 chr9 19728673 19729091 -98133536 - L1ME3 LINE L1 -1648 4481 4053 2500 71 3 7 chr9 19729091 19729401 -98133226 - AluY SINE Alu -2 309 1 1249 266 75 102 chr9 19729401 19729937 -98132690 - L1ME3 LINE L1 -2076 4053 3504 2369 64 42 0 chr9 19729937 19730220 -98132407 + AluY SINE Alu 1 295 -16 1249 266 75 102 chr9 19730220 19730272 -98132355 - L1ME3 LINE L1 -2625 3504 3452 189 0 0 0 chr9 19730272 19730293 -98132334 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1249 266 75 102 chr9 19730293 19730315 -98132312 - L1ME3 LINE L1 -2677 3452 3431 2011 148 0 0 chr9 19730315 19730598 -98132029 - AluSx SINE Alu -29 283 1 1249 266 75 102 chr9 19730598 19730798 -98131829 - L1ME3 LINE L1 -2698 3431 3306 1676 150 79 0 chr9 19730823 19731090 -98131537 + AluSq SINE Alu 9 296 -17 348 304 30 22 chr9 19731101 19731236 -98131391 - L1ME3 LINE L1 -3274 2855 2720 993 107 0 0 chr9 19731251 19731382 -98131245 - AluSg SINE Alu -179 131 1 570 318 57 24 chr9 19731395 19732011 -98130616 - L1ME3 LINE L1 -3401 2728 2093 1443 184 69 21 chr9 19732092 19732380 -98130247 + AluJo SINE Alu 1 302 0 991 114 6 6 chr9 19732386 19732553 -98130074 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 376 305 138 18 chr9 19732894 19733100 -98129527 - L1ME3 LINE L1 -4440 1689 1379 1894 153 28 0 chr9 19733105 19733392 -98129235 + AluJb SINE Alu 1 295 -17 253 321 4 80 chr9 19733392 19733421 -98129206 - HAL1 LINE L1 -898 1609 1579 3898 199 17 63 chr9 19733421 19734437 -98128190 + LTR5 LTR ERVK 1 969 0 253 321 4 80 chr9 19734437 19734530 -98128097 - HAL1 LINE L1 -928 1579 1480 1765 127 0 8 chr9 19734530 19734817 -98127810 - AluSx SINE Alu 0 327 43 253 321 4 80 chr9 19734817 19734954 -98127673 - HAL1 LINE L1 -1027 1480 1368 * 1253 240 36 61 chr9 19734940 19735157 -98127470 - L1ME3 LINE L1 -4902 1217 996 549 100 0 0 chr9 19735157 19735237 -98127390 + MADE1 DNA Mariner 1 80 0 1253 240 36 61 chr9 19735237 19735394 -98127233 - L1ME3 LINE L1 -5123 996 837 315 0 0 0 chr9 19735394 19735429 -98127198 + (TG)n Simple_repeat Simple_repeat 1 35 0 1253 240 36 61 chr9 19735429 19735727 -98126900 - L1ME3 LINE L1 -5282 837 561 2088 122 40 0 chr9 19736006 19736181 -98126446 - AluSq SINE Alu -5 308 115 224 89 0 22 chr9 19736181 19736226 -98126401 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2088 122 40 0 chr9 19736226 19736346 -98126281 - AluSq SINE Alu -198 115 1 267 295 26 0 chr9 19736440 19736518 -98126109 - MIR SINE MIR -103 159 80 272 288 134 81 chr9 19737083 19737345 -98125282 - L2 LINE L2 -5 3267 2976 2103 125 0 58 chr9 19737345 19737672 -98124955 + AluSg SINE Alu 1 308 -2 272 288 134 81 chr9 19737672 19737805 -98124822 - L2 LINE L2 -296 2976 2851 1842 137 39 11 chr9 19738025 19738309 -98124318 + AluSx SINE Alu 1 292 -20 220 281 94 42 chr9 19738904 19739000 -98123627 + MIR SINE MIR 19 119 -143 29 0 0 0 chr9 19739852 19739881 -98122746 + GC_rich Low_complexity Low_complexity 1 29 0 200 170 21 21 chr9 19740992 19741039 -98121588 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 181 243 100 14 chr9 19741041 19741111 -98121516 - L2 LINE L2 -60 3212 3137 307 274 9 57 chr9 19741374 19741480 -98121147 + MIR SINE MIR 5 105 -157 1375 143 5 27 chr9 19741942 19742165 -98120462 + AluJo SINE Alu 88 305 -7 2377 93 10 6 chr9 19742436 19742748 -98119879 - AluSp SINE Alu 0 313 1 1072 302 39 18 chr9 19742903 19743566 -98119061 - L1ME3A LINE L1 -289 5881 5204 807 140 39 39 chr9 19743601 19743779 -98118848 - L1MA7 LINE L1 0 6291 6114 592 174 8 8 chr9 19743925 19744057 -98118570 + CT-rich Low_complexity Low_complexity 1 132 0 506 291 29 87 chr9 19744058 19744119 -98118508 - L1ME3A LINE L1 -1047 5099 5036 2234 131 0 0 chr9 19744119 19744431 -98118196 - AluSx SINE Alu 0 312 1 506 291 29 87 chr9 19744431 19744771 -98117856 - L1ME3A LINE L1 -1110 5036 4746 953 280 63 63 chr9 19744771 19745136 -98117491 + MLT1J1 LTR MaLR 1 368 -78 2350 105 7 0 chr9 19745136 19745441 -98117186 - AluSc SINE Alu -2 307 1 953 280 63 63 chr9 19745441 19745521 -98117106 + MLT1J1 LTR MaLR 367 446 0 506 291 29 87 chr9 19745521 19745765 -98116862 - L1ME3A LINE L1 -1400 4746 4490 33 25 0 0 chr9 19745798 19745838 -98116789 + AT_rich Low_complexity Low_complexity 1 40 0 280 290 56 0 chr9 19745970 19746077 -98116550 + MER94 DNA DNA 19 131 -3 687 234 68 35 chr9 19746194 19746422 -98116205 - MIR SINE MIR -10 252 12 213 269 202 17 chr9 19747044 19747163 -98115464 + MIR SINE MIR 48 188 -74 375 233 56 11 chr9 19747855 19747945 -98114682 - MER91A DNA MER1_type -99 97 4 205 272 175 48 chr9 19748298 19748401 -98114226 + L2 LINE L2 3188 3303 -10 558 236 0 0 chr9 19748656 19748800 -98113827 + (TCCA)n Simple_repeat Simple_repeat 1 144 0 270 288 104 16 chr9 19748816 19748941 -98113686 - L2 LINE L2 -1 3271 3136 183 301 181 0 chr9 19749091 19749174 -98113453 - L2 LINE L2 -5 3308 3211 994 136 39 0 chr9 19749444 19749599 -98113028 + FAM SINE Alu 12 172 -13 425 345 40 6 chr9 19750830 19751004 -98111623 + MIR SINE MIR 47 226 -36 269 327 152 10 chr9 19751392 19751695 -98110932 + L2 LINE L2 2401 2746 -568 381 324 71 12 chr9 19751806 19751976 -98110651 - MER5A DNA MER1_type 0 189 10 915 211 11 16 chr9 19752286 19752471 -98110156 - MER5A DNA MER1_type -5 184 1 1846 165 7 3 chr9 19752475 19752772 -98109855 - AluJb SINE Alu -13 299 2 276 380 29 7 chr9 19752781 19752918 -98109709 + L2 LINE L2 2868 3007 -265 330 169 0 0 chr9 19753962 19754027 -98108600 + CT-rich Low_complexity Low_complexity 1 65 0 815 157 0 0 chr9 19754537 19754652 -98107975 + FLAM_C SINE Alu 1 115 -18 545 0 0 15 chr9 19754653 19754719 -98107908 + (TAGA)n Simple_repeat Simple_repeat 1 65 0 1001 229 28 5 chr9 19754982 19755196 -98107431 - MER20 DNA MER1_type 0 219 1 386 315 68 24 chr9 19755238 19755489 -98107138 + Tigger8 DNA MER2_type 69 330 -336 192 317 106 73 chr9 19755964 19756087 -98106540 - L2 LINE L2 0 3272 3146 227 301 242 13 chr9 19756094 19756247 -98106380 + MER91A DNA MER1_type 2 189 -7 874 295 51 0 chr9 19758707 19758944 -98103683 + MIR SINE MIR 6 254 -8 548 246 38 60 chr9 19760344 19760588 -98102039 + MIR SINE MIR 12 256 -6 201 268 71 0 chr9 19760653 19760709 -98101918 + MIR SINE MIR 85 144 -118 402 239 68 26 chr9 19761277 19761394 -98101233 + MIR SINE MIR 20 141 -67 2179 99 13 3 chr9 19761419 19761722 -98100905 + AluSx SINE Alu 6 311 -1 737 233 52 7 chr9 19761725 19761929 -98100698 + MIR SINE MIR 34 255 -7 205 271 51 0 chr9 19762747 19762806 -98099821 + MIR SINE MIR 84 145 -63 2145 95 7 3 chr9 19762863 19763158 -98099469 + AluSg SINE Alu 1 296 -14 340 350 29 7 chr9 19763182 19763319 -98099308 + MIR SINE MIR 86 225 -37 305 282 60 17 chr9 19764291 19764408 -98098219 - MIR SINE MIR -35 227 106 230 244 33 33 chr9 19764734 19764824 -98097803 + GA-rich Low_complexity Low_complexity 5 94 0 423 318 39 34 chr9 19765502 19765735 -98096892 - L1MC4a LINE L1 -1910 5898 5665 195 313 45 80 chr9 19765841 19765953 -98096674 - L2 LINE L2 -1034 2280 2173 233 221 15 59 chr9 19766094 19766162 -98096465 + L2 LINE L2 3208 3272 0 409 298 43 14 chr9 19766540 19766681 -98095946 - MIR SINE MIR -40 222 78 2185 99 0 0 chr9 19766713 19767023 -98095604 - AluSx SINE Alu 0 310 1 214 255 0 0 chr9 19767710 19767761 -98094866 + (TG)n Simple_repeat Simple_repeat 2 52 0 920 195 105 0 chr9 19768977 19769167 -98093460 + MER6B DNA MER2_type 1 210 0 192 264 46 46 chr9 19770409 19770496 -98092131 + MIR SINE MIR 31 117 -145 210 37 0 0 chr9 19770724 19770751 -98091876 + (TTTTA)n Simple_repeat Simple_repeat 3 29 0 307 305 199 0 chr9 19771328 19771479 -98091148 + MIR SINE MIR 63 243 -19 306 295 81 50 chr9 19772986 19773244 -98089383 + L2 LINE L2 2539 2804 -510 2489 68 0 6 chr9 19773716 19774027 -98088600 + AluSc SINE Alu 1 309 0 2712 7 0 0 chr9 19774039 19774338 -98088289 + AluY SINE Alu 1 299 -12 358 247 24 12 chr9 19774644 19774729 -98087898 + L2 LINE L2 3227 3312 -1 441 293 48 2 chr9 19774895 19775095 -98087532 + MIR3 SINE MIR 47 254 -8 286 307 268 21 chr9 19776135 19776301 -98086326 + L3 LINE CR1 963 1087 -490 2313 93 7 3 chr9 19776301 19776611 -98086016 + AluSx SINE Alu 2 312 0 286 307 268 21 chr9 19776611 19776724 -98085903 + L3 LINE CR1 1087 1311 -266 560 248 12 6 chr9 19777547 19777874 -98084753 + (TGGA)n Simple_repeat Simple_repeat 1 328 0 283 291 105 26 chr9 19778558 19778778 -98083849 + MIR3 SINE MIR 4 255 -7 219 276 0 0 chr9 19778934 19778992 -98083635 + L2 LINE L2 3215 3272 0 254 188 0 0 chr9 19779067 19779115 -98083512 + MIR SINE MIR 188 235 -27 652 255 157 74 chr9 19779495 19779893 -98082734 + L2 LINE L2 2244 2608 -705 2258 113 0 0 chr9 19779893 19780202 -98082425 + AluSx SINE Alu 4 312 0 652 255 157 74 chr9 19780202 19780366 -98082261 + L2 LINE L2 2608 2757 -556 844 158 0 0 chr9 19780366 19780499 -98082128 - FLAM_C SINE Alu 0 133 1 652 255 157 74 chr9 19780499 19780884 -98081743 + L2 LINE L2 2757 3300 -13 2254 104 0 0 chr9 19780886 19781195 -98081432 + AluSg SINE Alu 1 309 -1 47 19 0 0 chr9 19781543 19781597 -98081030 + GC_rich Low_complexity Low_complexity 1 54 0 478 299 51 0 chr9 19782014 19782171 -98080456 - MIR SINE MIR -92 170 6 285 354 55 18 chr9 19782657 19782821 -98079806 - MIR SINE MIR -11 251 82 404 284 53 62 chr9 19783403 19783611 -98079016 - L2 LINE L2 -219 3053 2848 455 257 40 46 chr9 19784078 19784230 -98078397 - MIR SINE MIR -88 174 24 1861 53 0 4 chr9 19784345 19784572 -98078055 + AluY SINE Alu 77 302 -9 468 285 95 0 chr9 19785019 19785177 -98077450 + MIR SINE MIR 80 252 -10 481 279 49 77 chr9 19785400 19785489 -98077138 - MIR SINE MIR -20 242 159 2287 98 0 3 chr9 19785489 19785795 -98076832 - AluSx SINE Alu -1 311 7 481 279 49 77 chr9 19785795 19785888 -98076739 - MIR SINE MIR -103 159 65 425 315 67 6 chr9 19785909 19786074 -98076553 - MIR SINE MIR -54 208 34 413 321 14 36 chr9 19786916 19787056 -98075571 + MER91A DNA MER1_type 2 138 -58 250 211 133 11 chr9 19787232 19787322 -98075305 - MIR SINE MIR -44 218 118 * 400 301 0 27 chr9 19787320 19787466 -98075161 - L2 LINE L2 -165 3107 2966 762 298 5 0 chr9 19788060 19788251 -98074376 + MIR SINE MIR 65 256 -6 490 318 51 42 chr9 19788393 19788726 -98073901 - L2 LINE L2 -468 2846 2511 225 254 0 28 chr9 19789701 19789772 -98072855 + (CA)n Simple_repeat Simple_repeat 1 69 0 21 0 0 0 chr9 19791711 19791732 -98070895 + GC_rich Low_complexity Low_complexity 1 21 0 272 173 24 47 chr9 19792200 19792327 -98070300 + (CTGGGG)n Simple_repeat Simple_repeat 4 127 0 450 300 126 22 chr9 19792532 19792755 -98069872 - MIR SINE MIR 0 262 17 189 257 133 0 chr9 19793329 19793434 -98069193 + L2 LINE L2 2379 2497 -817 204 335 125 23 chr9 19793669 19793973 -98068654 + L2 LINE L2 2820 3154 -118 214 264 190 33 chr9 19795753 19795874 -98066753 - L3 LINE CR1 -9 1568 1429 450 323 205 41 chr9 19795969 19796221 -98066406 - L3 LINE CR1 -467 1110 901 2254 67 3 0 chr9 19796221 19796558 -98066069 - AluSp SINE Alu 0 338 1 450 323 205 41 chr9 19796558 19797017 -98065610 - L3 LINE CR1 -676 901 281 453 248 74 22 chr9 19797535 19797683 -98064944 - MIR3 SINE MIR -25 183 28 182 304 101 14 chr9 19797718 19797787 -98064840 - L3 LINE CR1 -1222 355 281 181 237 0 0 chr9 19797842 19797880 -98064747 - MIR3 SINE MIR -8 200 163 289 277 0 0 chr9 19798102 19798167 -98064460 - MIR SINE MIR -63 145 81 260 310 121 0 chr9 19798391 19798507 -98064120 - MIR3 SINE MIR -65 143 14 208 255 0 0 chr9 19798947 19798998 -98063629 + (CA)n Simple_repeat Simple_repeat 1 51 0 387 320 187 24 chr9 19799693 19800024 -98062603 - L2 LINE L2 0 3272 2888 280 250 116 62 chr9 19800061 19800173 -98062454 - L2 LINE L2 -625 2689 2572 411 219 16 32 chr9 19801139 19801262 -98061365 + AluJb SINE Alu 167 287 -25 4285 178 29 39 chr9 19801287 19801510 -98061117 + L1MB3 LINE L1 5110 5334 -849 1926 127 3 3 chr9 19801510 19801828 -98060799 + AluSx SINE Alu 1 318 0 4285 178 29 39 chr9 19801828 19801987 -98060640 + L1MB3 LINE L1 5334 5493 -690 212 0 36 0 chr9 19801987 19802015 -98060612 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 4285 178 29 39 chr9 19802015 19802692 -98059935 + L1MB3 LINE L1 5493 6182 -1 2141 108 10 16 chr9 19802766 19803080 -98059547 + AluSx SINE Alu 1 312 0 1585 188 64 0 chr9 19803296 19803578 -98059049 - AluJo SINE Alu -12 300 1 704 195 24 0 chr9 19803880 19804003 -98058624 - FLAM_A SINE Alu -7 126 1 1942 141 3 0 chr9 19804047 19804344 -98058283 + AluSx SINE Alu 1 298 -14 743 274 8 46 chr9 19804801 19805064 -98057563 - L2 LINE L2 -201 3071 2819 218 318 167 8 chr9 19805331 19805463 -98057164 + MIR SINE MIR 60 212 -50 346 322 119 41 chr9 19805823 19806118 -98056509 + L2 LINE L2 2643 2960 -354 2125 118 0 0 chr9 19806199 19806488 -98056139 + AluSx SINE Alu 1 287 -25 196 129 0 0 chr9 19806488 19806519 -98056108 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 230 229 0 0 chr9 19806519 19806567 -98056060 - MIR SINE MIR -98 164 117 604 272 121 9 chr9 19806733 19806957 -98055670 + MIR SINE MIR 2 250 -12 487 240 60 40 chr9 19807214 19807364 -98055263 + MIR SINE MIR 20 172 -90 292 216 81 72 chr9 19807562 19807673 -98054954 - Charlie8 DNA MER1_type -2208 209 98 786 196 204 13 chr9 19807683 19807908 -98054719 + L1ME3A LINE L1 5895 6162 -8 2052 129 0 7 chr9 19808305 19808615 -98054012 + AluSx SINE Alu 1 308 -4 1852 113 0 0 chr9 19809688 19809936 -98052691 - AluSg SINE Alu -28 282 35 264 249 126 80 chr9 19809950 19810181 -98052446 - MIR SINE MIR -5 257 1 558 0 0 0 chr9 19811868 19811930 -98050697 + (TG)n Simple_repeat Simple_repeat 2 63 0 197 308 0 0 chr9 19813136 19813188 -98049439 - L2 LINE L2 -14 3258 3207 387 271 157 52 chr9 19813340 19813803 -98048824 + L2 LINE L2 2620 3255 -17 248 281 10 8 chr9 19814168 19814255 -98048372 + MIR SINE MIR 52 139 -69 197 277 45 51 chr9 19814456 19814633 -98047994 + L2 LINE L2 2892 3067 -205 347 303 28 61 chr9 19814700 19814875 -98047752 + MIR SINE MIR 3 170 -63 207 319 70 32 chr9 19815024 19815209 -98047418 + L2 LINE L2 2894 3085 -187 292 267 47 0 chr9 19815225 19815311 -98047316 - MIR SINE MIR -75 187 98 492 254 67 30 chr9 19816017 19816182 -98046445 + MIR SINE MIR 79 249 -13 228 200 25 75 chr9 19816548 19816628 -98045999 - L2 LINE L2 0 3272 3197 227 331 115 31 chr9 19816629 19816759 -98045868 - MER5A DNA MER1_type 0 189 49 1789 166 23 0 chr9 19817344 19817646 -98044981 + AluJb SINE Alu 4 312 0 848 176 0 0 chr9 19817662 19817793 -98044834 + FLAM_A SINE Alu 1 131 -2 219 250 29 29 chr9 19817892 19817960 -98044667 + L2 LINE L2 2994 3061 -252 1639 152 22 4 chr9 19818197 19818497 -98044130 - AluSx SINE Alu 0 305 1 541 128 13 0 chr9 19818676 19818754 -98043873 - AluSq/x SINE Alu -195 117 39 274 296 0 0 chr9 19818761 19818842 -98043785 + LTR16C LTR ERVL 408 488 -3 201 333 0 0 chr9 19819013 19819073 -98043554 + L2 LINE L2 3204 3263 -9 1615 133 56 4 chr9 19819231 19819501 -98043126 + AluJb SINE Alu 1 284 -28 192 160 0 0 chr9 19819501 19819546 -98043081 + (TA)n Simple_repeat Simple_repeat 2 46 0 1580 147 0 102 chr9 19819556 19819690 -98042937 + AluSx SINE Alu 2 148 -184 2230 109 0 0 chr9 19819690 19819993 -98042634 + AluSx SINE Alu 1 303 -9 1580 147 0 102 chr9 19819993 19820221 -98042406 + AluSx SINE Alu 148 332 0 2028 113 10 13 chr9 19820231 19820540 -98042087 + AluSx SINE Alu 1 308 -4 941 191 48 0 chr9 19821064 19821252 -98041375 + MER20 DNA MER1_type 2 198 -21 451 301 83 21 chr9 19821344 19821537 -98041090 + MIR SINE MIR 46 250 -12 1936 177 25 32 chr9 19821589 19821996 -98040631 + MLT1C LTR MaLR 59 462 -5 353 284 32 0 chr9 19823067 19823162 -98039465 + MIR SINE MIR 41 138 -124 378 314 64 16 chr9 19823252 19823440 -98039187 - MIR SINE MIR -6 256 60 817 117 8 0 chr9 19823444 19823564 -98039063 - FRAM SINE Alu -11 165 45 255 170 0 0 chr9 19826916 19826963 -98035664 + A-rich Low_complexity Low_complexity 1 47 0 416 293 70 6 chr9 19828172 19828329 -98034298 - MIR SINE MIR -76 186 20 25 51 0 0 chr9 19829578 19829617 -98033010 + AT_rich Low_complexity Low_complexity 1 39 0 608 161 0 0 chr9 19829617 19829710 -98032917 - FLAM_C SINE Alu -19 124 32 3559 115 2 2 chr9 19830498 19831011 -98031616 - MER75 DNA T2_type 0 514 2 525 301 143 19 chr9 19831661 19831877 -98030750 + MIR SINE MIR 20 262 0 326 355 63 7 chr9 19831932 19832100 -98030527 - MIR3 SINE MIR -21 187 12 295 262 0 0 chr9 19833696 19833757 -98028870 + MIR SINE MIR 87 147 -115 213 340 57 63 chr9 19833892 19834051 -98028576 - MIR3 SINE MIR -23 185 28 932 281 31 12 chr9 19834172 19834428 -98028199 - MIR SINE MIR 0 262 2 243 88 0 0 chr9 19836751 19836785 -98025842 + (A)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr9 19838213 19838234 -98024393 + AT_rich Low_complexity Low_complexity 1 21 0 194 250 133 0 chr9 19838759 19838819 -98023808 - MIR SINE MIR -11 251 184 313 234 81 102 chr9 19839341 19839541 -98023086 - L1ME4a LINE L1 -4 6117 5914 213 39 0 0 chr9 19839541 19839567 -98023060 + (TA)n Simple_repeat Simple_repeat 1 26 0 313 234 81 102 chr9 19839567 19839837 -98022790 - L1ME4a LINE L1 -207 5914 5657 1847 140 0 11 chr9 19840183 19840468 -98022159 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr9 19840471 19840503 -98022124 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr9 19840790 19840824 -98021803 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr9 19841194 19841219 -98021408 + AT_rich Low_complexity Low_complexity 1 25 0 844 174 0 32 chr9 19841222 19841377 -98021250 + AluJo SINE Alu 1 150 -162 1284 237 17 36 chr9 19841382 19841740 -98020887 - LTR27 LTR ERV1 -2 634 284 748 219 0 18 chr9 19841720 19841889 -98020738 - LTR28 LTR ERV1 -854 166 1 * 856 188 6 0 chr9 19841889 19842049 -98020578 + AluJo SINE Alu 147 307 -5 297 0 0 0 chr9 19842102 19842135 -98020492 + (CA)n Simple_repeat Simple_repeat 2 34 0 573 259 121 26 chr9 19843501 19843733 -98018894 + MIR SINE MIR 4 257 -5 2387 196 12 10 chr9 19843861 19844372 -98018255 - L1MB7 LINE L1 -16 6168 5657 419 295 60 44 chr9 19845386 19845569 -98017058 + MIR SINE MIR 77 262 0 469 280 25 19 chr9 19845840 19845997 -98016630 + MIR SINE MIR 10 167 -95 225 286 114 19 chr9 19846065 19846170 -98016457 + MER20B DNA MER1_type 62 176 -607 351 200 114 29 chr9 19846719 19846859 -98015768 - L1ME4a LINE L1 -3 6118 5967 410 305 142 11 chr9 19848920 19849110 -98013517 + MIR SINE MIR 20 234 -28 331 314 196 29 chr9 19849457 19850119 -98012508 + L1MEd LINE L1 44 816 -5303 2609 108 59 5 chr9 19850126 19850532 -98012095 - MSTA LTR MaLR 0 428 1 534 270 100 32 chr9 19850537 19850848 -98011779 + L1ME3A LINE L1 5610 5941 -229 2186 149 6 3 chr9 19851220 19851556 -98011071 + MER1B DNA MER1_type 1 337 0 1539 115 152 7 chr9 19852135 19852405 -98010222 - AluSg1 SINE Alu 0 309 1 218 313 78 39 chr9 19852898 19853026 -98009601 + MIR SINE MIR 6 138 -124 657 191 22 122 chr9 19853078 19853308 -98009319 - MIR SINE MIR -11 251 45 2139 50 0 53 chr9 19853383 19853712 -98008915 - AluY SINE Alu 0 313 1 452 310 28 7 chr9 19853991 19854133 -98008494 - MIR SINE MIR -110 152 8 503 323 0 31 chr9 19854683 19854844 -98007783 + MIR SINE MIR 23 178 -84 4321 139 21 56 chr9 19854846 19855495 -98007132 + L1PB4 LINE L1 5362 5977 -179 2221 105 0 0 chr9 19855495 19855791 -98006836 + AluSq SINE Alu 1 296 -17 4321 139 21 56 chr9 19855791 19855963 -98006664 + L1PB4 LINE L1 5977 6154 -2 230 338 0 0 chr9 19855974 19856048 -98006579 + MIR SINE MIR 186 259 -3 21 0 0 0 chr9 19857480 19857501 -98005126 + AT_rich Low_complexity Low_complexity 1 21 0 259 264 146 41 chr9 19857905 19858082 -98004545 - MIR SINE MIR -57 151 4 218 341 56 16 chr9 19858523 19858649 -98003978 + MIR3 SINE MIR 78 208 0 595 274 19 6 chr9 19859512 19859669 -98002958 - MER5B DNA MER1_type -18 160 2 28 0 0 0 chr9 19859795 19859823 -98002804 + AT_rich Low_complexity Low_complexity 1 28 0 1629 195 7 10 chr9 19859823 19860131 -98002496 - AluJb SINE Alu -5 307 1 394 55 0 0 chr9 19860843 19860898 -98001729 - L1PA6 LINE L1 -3 6151 6097 3099 87 11 104 chr9 19861064 19861593 -98001034 - LTR12 LTR ERV1 -234 480 1 2194 103 0 3 chr9 19862019 19862311 -98000316 + AluSx SINE Alu 1 291 -21 24 67 0 0 chr9 19862406 19862451 -98000176 + AT_rich Low_complexity Low_complexity 1 45 0 766 262 109 14 chr9 19862617 19862838 -97999789 + MIR SINE MIR 11 252 -10 2233 110 10 3 chr9 19863055 19863364 -97999263 - AluSx SINE Alu -1 311 1 362 204 68 23 chr9 19863728 19863816 -97998811 + MIR SINE MIR 168 259 -3 198 0 0 0 chr9 19864313 19864335 -97998292 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 1634 163 134 25 chr9 19864624 19865071 -97997556 + LTR54B LTR ERV1 1 496 -2 358 299 130 0 chr9 19866815 19866969 -97995658 - MIR SINE MIR 0 262 89 345 223 176 40 chr9 19868945 19869093 -97993534 + MLT1H LTR MaLR 379 546 -3 565 180 168 43 chr9 19869351 19869512 -97993115 - MER5A DNA MER1_type 0 189 9 1811 146 124 64 chr9 19869539 19869943 -97992684 - MSTA LTR MaLR 0 428 1 261 209 191 36 chr9 19870483 19870593 -97992034 - L2 LINE L2 -1 3271 3145 353 237 20 96 chr9 19872491 19872689 -97989938 + L1ME4a LINE L1 5813 5995 -126 21 0 0 0 chr9 19872708 19872729 -97989898 + AT_rich Low_complexity Low_complexity 1 21 0 354 274 124 24 chr9 19873308 19873688 -97988939 - L1M4 LINE L1 -3527 2619 2202 1834 175 0 10 chr9 19873761 19874070 -97988557 - AluJb SINE Alu -6 306 1 180 0 0 0 chr9 19874219 19874239 -97988388 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2191 114 0 0 chr9 19874252 19874549 -97988078 - AluSg SINE Alu -11 299 3 204 111 0 0 chr9 19876279 19876315 -97986312 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 802 125 0 0 chr9 19876949 19877061 -97985566 - FRAM SINE Alu -19 157 46 2407 77 3 3 chr9 19877309 19877620 -97985007 - AluY SINE Alu 0 311 1 459 287 9 0 chr9 19878881 19878989 -97983638 - MER81 DNA DNA -5 109 1 437 247 103 49 chr9 19879280 19879503 -97983124 + MLT1L LTR MaLR 368 602 -13 207 255 0 0 chr9 19879987 19880034 -97982593 + GA-rich Low_complexity Low_complexity 2 48 0 247 255 47 7 chr9 19881950 19882099 -97980528 + (TTAAA)n Simple_repeat Simple_repeat 2 156 0 24 32 0 0 chr9 19882099 19882130 -97980497 + AT_rich Low_complexity Low_complexity 1 31 0 398 115 0 0 chr9 19882310 19882362 -97980265 + AluJ/FRAM SINE Alu 231 282 -20 290 260 10 40 chr9 19883141 19883241 -97979386 - HsTC2 DNA Tc2 -1799 99 3 330 297 54 7 chr9 19883949 19884097 -97978530 - MER103 DNA DNA -10 156 2 194 244 44 0 chr9 19884232 19884277 -97978350 - L2 LINE L2 -556 2758 2712 286 309 0 0 chr9 19884330 19884398 -97978229 - L2 LINE L2 0 3313 3246 297 317 41 28 chr9 19884505 19884650 -97977977 - L2 LINE L2 -4 3268 3122 447 19 0 0 chr9 19884774 19884826 -97977801 + (TA)n Simple_repeat Simple_repeat 1 52 0 2158 106 0 35 chr9 19884835 19885147 -97977480 - AluSx SINE Alu -11 301 1 186 118 0 0 chr9 19885420 19885454 -97977173 + (CAA)n Simple_repeat Simple_repeat 3 36 0 233 29 0 0 chr9 19885655 19885690 -97976937 + L1PA3 LINE L1 6120 6154 -1 738 254 62 0 chr9 19885720 19885980 -97976647 - MER69 DNA AcHobo -236 2290 2015 * 2520 258 78 36 chr9 19885979 19886748 -97975879 - MER69 DNA AcHobo -425 801 1 236 378 115 35 chr9 19887647 19888288 -97974339 + L2 LINE L2 2353 3046 -226 590 264 104 26 chr9 19888375 19888568 -97974059 - MIR SINE MIR -8 254 47 2210 128 0 0 chr9 19888675 19888980 -97973647 - AluSx SINE Alu -7 305 1 264 344 49 33 chr9 19888980 19889102 -97973525 + L2 LINE L2 3142 3265 -7 21 36 0 0 chr9 19889114 19889142 -97973485 + AT_rich Low_complexity Low_complexity 1 28 0 1951 130 0 7 chr9 19891786 19892127 -97970500 - AluSx SINE Alu 0 339 1 438 233 98 78 chr9 19892277 19892470 -97970157 + MIR SINE MIR 24 220 -42 522 367 52 46 chr9 19892479 19892847 -97969780 - L2 LINE L2 0 3272 2903 497 335 174 19 chr9 19892851 19893338 -97969289 - L2 LINE L2 -1037 2277 1715 1876 138 0 7 chr9 19893683 19893959 -97968668 + AluSx SINE Alu 1 274 -38 441 333 9 0 chr9 19893998 19894112 -97968515 - L2 LINE L2 -22 3250 3136 203 245 42 189 chr9 19894512 19894598 -97968029 - MIR3 SINE MIR -6 202 144 2219 125 3 0 chr9 19894598 19894910 -97967717 + AluSq SINE Alu 1 313 0 203 245 42 189 chr9 19894910 19894966 -97967661 - MIR3 SINE MIR -64 144 81 220 197 15 15 chr9 19895209 19895275 -97967352 + (TA)n Simple_repeat Simple_repeat 2 67 0 272 178 27 14 chr9 19895306 19895379 -97967248 + (TA)n Simple_repeat Simple_repeat 1 74 0 343 295 36 18 chr9 19895479 19895645 -97966982 - L1M4 LINE L1 -2056 4090 3922 3885 93 17 25 chr9 19895693 19896281 -97966346 - L1PA11 LINE L1 0 6174 5592 1934 123 3 71 chr9 19896334 19896658 -97965969 - AluSc SINE Alu -7 302 1 386 0 41 0 chr9 19896659 19896708 -97965919 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1823 150 11 17 chr9 19896708 19896995 -97965632 - AluJb SINE Alu -27 285 1 1195 232 50 138 chr9 19897101 19898396 -97964231 - L1MC5 LINE L1 -60 7901 6721 378 329 13 60 chr9 19898401 19898643 -97963984 - L1M4 LINE L1 -2391 3755 3528 2258 88 0 50 chr9 19898643 19898961 -97963666 - AluSq SINE Alu -11 302 1 378 329 13 60 chr9 19898961 19899016 -97963611 - L1M4 LINE L1 -2618 3528 3472 236 235 25 67 chr9 19899018 19899137 -97963490 - L1MEd LINE L1 -5988 131 18 5157 273 51 15 chr9 19899925 19901735 -97960892 + L1MD2 LINE L1 39 1914 -4482 8157 237 78 30 chr9 19901760 19904859 -97957768 + L1MD2 LINE L1 2009 5227 -988 1234 244 32 48 chr9 19904887 19905228 -97957399 + L1MD2 LINE L1 5656 5992 -436 2347 84 10 0 chr9 19905228 19905524 -97957103 - AluSg SINE Alu -11 299 1 1234 244 32 48 chr9 19905524 19905555 -97957072 + L1MD2 LINE L1 5992 6022 -406 387 77 0 0 chr9 19905631 19905683 -97956944 + MADE1 DNA Mariner 28 79 -1 196 333 0 0 chr9 19905762 19905816 -97956811 - L2 LINE L2 -687 2627 2574 390 324 27 0 chr9 19906322 19906470 -97956157 + MER117 DNA MER1_type 11 162 -35 245 313 24 12 chr9 19906860 19906943 -97955684 - MIR SINE MIR -108 154 71 191 36 36 0 chr9 19906944 19906972 -97955655 + (CTGGGG)n Simple_repeat Simple_repeat 1 29 0 316 281 105 9 chr9 19907181 19907295 -97955332 - MIR SINE MIR -127 135 11 247 278 0 42 chr9 19909304 19909376 -97953251 - L2 LINE L2 -4 3268 3200 340 376 23 8 chr9 19909886 19910019 -97952608 + L3b LINE CR1 1443 1577 -6 195 319 124 26 chr9 19910119 19910232 -97952395 - L2 LINE L2 -17 3255 3132 202 111 0 44 chr9 19910926 19910971 -97951656 + (TC)n Simple_repeat Simple_repeat 2 44 0 1558 175 10 32 chr9 19911365 19911674 -97950953 + AluJo SINE Alu 3 304 -8 217 276 143 38 chr9 19912515 19912620 -97950007 - MIR SINE MIR -131 131 16 1342 176 45 77 chr9 19914119 19914432 -97948195 + AluJo SINE Alu 10 312 0 210 273 0 0 chr9 19914905 19914960 -97947667 + (TA)n Simple_repeat Simple_repeat 2 56 0 2346 104 0 0 chr9 19915578 19915885 -97946742 - AluSx SINE Alu -5 307 1 301 317 195 0 chr9 19915905 19916028 -97946599 - MER5A DNA MER1_type 0 189 43 629 223 8 8 chr9 19917316 19917446 -97945181 - L3 LINE CR1 -2 1575 1446 854 312 108 64 chr9 19917491 19918256 -97944371 - L3 LINE CR1 -343 1234 436 212 309 44 0 chr9 19918314 19918382 -97944245 - L3 LINE CR1 -1071 506 436 245 257 18 106 chr9 19918464 19918577 -97944050 + MIR SINE MIR 105 207 -55 308 319 31 66 chr9 19920164 19920390 -97942237 - L2 LINE L2 -4 3309 3092 234 295 150 29 chr9 19920440 19920613 -97942014 + L2 LINE L2 2672 2865 -449 480 292 0 56 chr9 19920703 19920847 -97941780 + L2 LINE L2 3136 3271 -1 240 259 159 65 chr9 19921109 19921279 -97941348 - L2 LINE L2 -9 3304 3119 1458 132 24 29 chr9 19921457 19921771 -97940856 - THE1B LTR MaLR 0 355 1 324 336 139 19 chr9 19922126 19922558 -97940069 + L2 LINE L2 1557 2040 -1274 662 313 74 11 chr9 19922611 19922895 -97939732 - LTR16A LTR ERVL -18 432 131 224 329 13 0 chr9 19923994 19924070 -97938557 + GA-rich Low_complexity Low_complexity 5 81 0 186 167 0 0 chr9 19924787 19924823 -97937804 + T-rich Low_complexity Low_complexity 1 36 0 2175 96 7 0 chr9 19925168 19925459 -97937168 - AluSg SINE Alu -17 293 1 290 296 37 0 chr9 19925496 19925577 -97937050 + L2 LINE L2 3227 3310 -3 229 311 87 3 chr9 19925575 19925745 -97936882 - MIR SINE MIR -34 228 3 * 26 30 0 0 chr9 19926393 19926426 -97936201 + AT_rich Low_complexity Low_complexity 1 33 0 1542 161 82 37 chr9 19926762 19927117 -97935510 + L1MB7 LINE L1 5795 6165 -19 658 301 51 19 chr9 19930019 19930235 -97932392 - MIR SINE MIR -15 247 25 693 258 160 18 chr9 19930663 19930888 -97931739 - MIR SINE MIR -3 259 3 444 329 61 43 chr9 19931639 19931870 -97930757 - MIR SINE MIR 0 262 28 255 79 0 0 chr9 19933806 19933844 -97928783 + (TC)n Simple_repeat Simple_repeat 2 39 0 1655 223 134 72 chr9 19934251 19935416 -97927211 - Charlie2a DNA MER1_type -6 2856 1620 1907 237 27 10 chr9 19935418 19935991 -97926636 + L1ME1 LINE L1 5236 5816 -350 799 169 62 56 chr9 19936001 19936179 -97926448 + L1ME1 LINE L1 6003 6334 0 293 240 0 13 chr9 19936182 19936257 -97926370 - Charlie2a DNA MER1_type -1227 1635 1562 344 167 14 0 chr9 19936354 19936426 -97926201 + (TA)n Simple_repeat Simple_repeat 2 74 0 1477 243 94 31 chr9 19936488 19937060 -97925567 - Charlie2a DNA MER1_type -2167 615 8 1805 200 40 38 chr9 19937506 19937713 -97924914 - MSTD LTR MaLR 0 396 186 2239 85 3 10 chr9 19937713 19938006 -97924621 - AluSp SINE Alu -22 291 1 1805 200 40 38 chr9 19938006 19938193 -97924434 - MSTD LTR MaLR -210 186 1 4470 255 68 28 chr9 19938206 19939541 -97923086 - MSTD-int LTR MaLR -15 1720 332 966 200 14 9 chr9 19939541 19939756 -97922871 - HERVL-B3 LTR ERVL -5438 216 1 2844 168 30 51 chr9 19939756 19940322 -97922305 - MLT2B3 LTR ERVL 0 554 1 25 83 0 0 chr9 19940542 19940602 -97922025 + AT_rich Low_complexity Low_complexity 1 60 0 646 269 131 57 chr9 19941671 19942006 -97920621 - L3b LINE CR1 -121 1462 1103 418 295 109 36 chr9 19942512 19942814 -97919813 + L2 LINE L2 2970 3293 -20 1561 191 16 16 chr9 19943123 19943427 -97919200 - AluJo SINE Alu -8 304 1 240 122 0 0 chr9 19943606 19943647 -97918980 + L1ME3A LINE L1 6126 6166 -4 732 224 38 76 chr9 19943990 19944254 -97918373 + MER112 DNA MER1_type 6 259 -1 285 254 32 0 chr9 19944595 19944658 -97917969 - MIR3 SINE MIR -7 201 137 440 287 9 9 chr9 19945244 19945359 -97917268 - L2 LINE L2 -1 3312 3198 583 94 71 39 chr9 19947145 19947272 -97915355 - L1MA8 LINE L1 0 6291 6161 790 217 58 16 chr9 19947702 19947891 -97914736 + MER8 DNA MER2_type 43 239 0 690 265 8 0 chr9 19948117 19948249 -97914378 - L2 LINE L2 -6 3266 3134 25 31 0 0 chr9 19948267 19948299 -97914328 + AT_rich Low_complexity Low_complexity 1 32 0 2248 131 0 0 chr9 19948450 19948762 -97913865 + AluSx SINE Alu 1 312 0 2276 180 82 39 chr9 19949162 19949723 -97912904 - L1MB2 LINE L1 -2 6169 5585 322 253 51 13 chr9 19949740 19949819 -97912808 - L2 LINE L2 0 3313 3232 726 274 144 24 chr9 19951140 19951523 -97911104 - MLT1J LTR MaLR -82 429 1 2172 98 0 7 chr9 19951530 19951844 -97910783 - AluSx SINE Alu 0 312 1 25 23 0 23 chr9 19952287 19952302 -97910325 + AT_rich Low_complexity Low_complexity 1 15 -27 759 66 82 0 chr9 19952302 19952424 -97910203 + L1MA8 LINE L1 6150 6281 -10 25 23 0 23 chr9 19952424 19952451 -97910176 + AT_rich Low_complexity Low_complexity 15 42 0 278 412 72 7 chr9 19952843 19952996 -97909631 - L2 LINE L2 -8 3264 3102 406 290 21 34 chr9 19953386 19953650 -97908977 - L2 LINE L2 -217 3055 2771 280 184 0 0 chr9 19953922 19953971 -97908656 + L2 LINE L2 3216 3264 -8 206 30 91 0 chr9 19954102 19954135 -97908492 + T-rich Low_complexity Low_complexity 1 36 0 185 308 44 124 chr9 19954270 19954520 -97908107 - MIR SINE MIR -13 249 20 436 238 143 0 chr9 19955047 19955173 -97907454 + MIR SINE MIR 2 145 -117 288 265 41 0 chr9 19955173 19955271 -97907356 - LTR67 LTR ERVL 0 557 456 498 248 40 0 chr9 19955736 19955861 -97906766 + MIR SINE MIR 130 259 -3 291 284 0 11 chr9 19955979 19956074 -97906553 + MIR SINE MIR 123 216 -46 205 156 22 22 chr9 19957045 19957090 -97905537 + (TA)n Simple_repeat Simple_repeat 1 45 0 447 261 46 50 chr9 19957090 19957279 -97905348 + MIR SINE MIR 14 212 -50 186 43 0 0 chr9 19959860 19959883 -97902744 + (CCCA)n Simple_repeat Simple_repeat 1 23 0 288 53 0 0 chr9 19960148 19960186 -97902441 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr9 19961314 19961344 -97901283 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr9 19961822 19961865 -97900762 + AT_rich Low_complexity Low_complexity 1 43 0 183 293 216 9 chr9 19965454 19965570 -97897057 + L2 LINE L2 3133 3272 0 1145 252 35 65 chr9 19965965 19966397 -97896230 + MLT1J2 LTR MaLR 3 421 -29 1443 102 16 0 chr9 19967056 19967242 -97895385 + AluSq SINE Alu 1 189 -124 21 0 0 0 chr9 19967295 19967316 -97895311 + AT_rich Low_complexity Low_complexity 1 21 0 289 338 15 53 chr9 19968882 19969015 -97893612 + L2 LINE L2 3145 3272 0 21 0 0 0 chr9 19969047 19969068 -97893559 + AT_rich Low_complexity Low_complexity 1 21 0 2412 75 0 7 chr9 19969344 19969652 -97892975 + AluY SINE Alu 6 311 0 427 234 0 0 chr9 19969902 19969979 -97892648 - L2 LINE L2 -20 3252 3176 678 207 35 35 chr9 19970825 19970994 -97891633 - MIR SINE MIR -50 212 44 358 311 104 70 chr9 19971189 19971575 -97891052 - L2 LINE L2 -30 3242 2844 225 254 0 90 chr9 19971878 19971945 -97890682 + L2 LINE L2 3207 3267 -5 1917 150 0 7 chr9 19972221 19972507 -97890120 + AluJb SINE Alu 7 290 -22 191 287 223 0 chr9 19973367 19973461 -97889166 - MIR SINE MIR -29 233 119 399 240 64 35 chr9 19973673 19973844 -97888783 + MER104 DNA MER2_type 1 176 -4 286 299 221 7 chr9 19974132 19974286 -97888341 + MER5A DNA MER1_type 1 187 -2 646 276 154 14 chr9 19974290 19974511 -97888116 + MIR SINE MIR 11 262 0 464 229 57 63 chr9 19974784 19974959 -97887668 - MER5B DNA MER1_type -4 174 1 200 246 88 0 chr9 19975730 19975787 -97886840 + MIR SINE MIR 160 221 -41 218 292 15 0 chr9 19976120 19976185 -97886442 + G-rich Low_complexity Low_complexity 2 67 0 271 266 114 82 chr9 19978522 19978706 -97883921 - MIR3 SINE MIR -6 202 13 217 369 58 10 chr9 19978785 19978888 -97883739 - L2 LINE L2 -11 3302 3195 363 325 81 44 chr9 19979648 19979808 -97882819 - L2 LINE L2 -2 3270 3105 2064 108 38 0 chr9 19979870 19980157 -97882470 + AluSx SINE Alu 1 298 -14 190 354 24 0 chr9 19980412 19980494 -97882133 - L2 LINE L2 -465 2849 2766 186 342 51 55 chr9 19980664 19980939 -97881688 - L2 LINE L2 -560 2754 2481 212 321 36 48 chr9 19981847 19981931 -97880696 - L2 LINE L2 -81 3191 3109 23 0 0 0 chr9 19983333 19983356 -97879271 + AT_rich Low_complexity Low_complexity 1 23 0 373 303 96 77 chr9 19984044 19984132 -97878495 - MIR SINE MIR -31 231 146 1959 124 31 3 chr9 19984132 19984422 -97878205 - AluSq SINE Alu -15 298 1 373 303 96 77 chr9 19984422 19984541 -97878086 - MIR SINE MIR -116 146 20 359 310 62 7 chr9 19984558 19984703 -97877924 + MIR SINE MIR 96 248 -14 2103 126 23 0 chr9 19987022 19987324 -97875303 + AluJo SINE Alu 1 309 -3 32 26 0 0 chr9 19988699 19988738 -97873889 + AT_rich Low_complexity Low_complexity 1 39 0 1918 139 48 65 chr9 19988815 19989215 -97873412 - L1MB3 LINE L1 -9 6174 5781 180 0 0 0 chr9 19989215 19989235 -97873392 + (TA)n Simple_repeat Simple_repeat 1 20 0 1918 139 48 65 chr9 19989235 19989293 -97873334 - L1MB3 LINE L1 -402 5781 5724 594 265 19 57 chr9 19989294 19989505 -97873122 - MIR SINE MIR -54 208 6 240 111 0 0 chr9 19989764 19989800 -97872827 + (TG)n Simple_repeat Simple_repeat 1 36 0 444 299 35 28 chr9 19989809 19989953 -97872674 - MIR SINE MIR -103 159 15 248 351 45 0 chr9 19991667 19991778 -97870849 + L2 LINE L2 3193 3308 -5 305 71 0 0 chr9 19993298 19993340 -97869287 + MADE1 DNA Mariner 5 46 -34 2226 109 7 0 chr9 19993696 19993999 -97868628 + AluSq SINE Alu 1 305 -8 21 36 0 0 chr9 19994480 19994508 -97868119 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 19994554 19994576 -97868051 + AT_rich Low_complexity Low_complexity 1 22 0 2897 6 0 0 chr9 19994696 19995010 -97867617 + AluYb8 SINE Alu 1 314 -4 489 283 84 51 chr9 19995327 19995564 -97867063 - MLT1H LTR MaLR -195 354 110 25 75 0 0 chr9 19997197 19997250 -97865377 + AT_rich Low_complexity Low_complexity 1 53 0 294 163 0 0 chr9 19998301 19998350 -97864277 - L2 LINE L2 0 3313 3265 21 57 0 0 chr9 19998515 19998550 -97864077 + AT_rich Low_complexity Low_complexity 1 35 0 202 171 86 0 chr9 19998618 19998653 -97863974 + L2 LINE L2 3220 3257 -15 183 227 0 45 chr9 19998858 19998902 -97863725 - MIR3 SINE MIR -24 184 143 1496 188 15 6 chr9 19998934 19999258 -97863369 - L1MB1 LINE L1 0 6168 5842 4952 180 66 38 chr9 19999260 20000114 -97862513 - L1MB1 LINE L1 -964 5182 4280 2427 58 10 3 chr9 20000114 20000423 -97862204 - AluY SINE Alu 0 311 1 4952 180 66 38 chr9 20000423 20000849 -97861778 - L1MB1 LINE L1 -1866 4280 3867 735 258 0 28 chr9 20000853 20001035 -97861592 + MER5B DNA MER1_type 2 178 0 1826 168 0 0 chr9 20001123 20001420 -97861207 - AluSx SINE Alu -7 305 9 180 0 0 0 chr9 20001807 20001827 -97860800 + (AGTTG)n Simple_repeat Simple_repeat 2 21 0 189 107 0 0 chr9 20001881 20001909 -97860718 + (A)n Simple_repeat Simple_repeat 1 28 0 225 159 0 0 chr9 20002019 20002063 -97860564 + GA-rich Low_complexity Low_complexity 1 44 0 250 354 20 0 chr9 20002396 20002495 -97860132 + MIR SINE MIR 41 141 -121 253 229 0 0 chr9 20002503 20002551 -97860076 + L2 LINE L2 3262 3309 -4 3582 21 39 0 chr9 20003211 20003643 -97858984 - L1PA2 LINE L1 0 6155 5707 260 135 0 19 chr9 20003776 20003828 -97858799 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 3197 148 13 2 chr9 20003947 20004487 -97858140 - L1PB4 LINE L1 -1 6155 5610 1643 118 4 0 chr9 20004491 20004720 -97857907 - AluSg/x SINE Alu -1 311 82 1133 117 6 0 chr9 20007073 20007252 -97855375 + L1MA2 LINE L1 6125 6304 0 40 49 0 0 chr9 20007274 20007335 -97855292 + AT_rich Low_complexity Low_complexity 1 61 0 27 29 0 0 chr9 20007535 20007569 -97855058 + AT_rich Low_complexity Low_complexity 1 34 0 1026 138 29 0 chr9 20007922 20008096 -97854531 + L1PA16 LINE L1 5979 6157 -9 20364 45 2 0 chr9 20008234 20012503 -97850124 - L1PA5 LINE L1 0 6154 1880 661 233 0 31 chr9 20012788 20012947 -97849680 + FRAM SINE Alu 20 173 -3 2128 114 0 0 chr9 20013690 20013971 -97848656 - AluSx SINE Alu -31 281 1 2957 97 52 52 chr9 20013981 20014498 -97848129 - L1PA11 LINE L1 -2 6172 5656 533 313 99 14 chr9 20015211 20015422 -97847205 + MIR SINE MIR 26 254 -8 182 88 0 29 chr9 20015696 20015730 -97846897 + (CTTTG)n Simple_repeat Simple_repeat 2 34 0 242 337 174 0 chr9 20015993 20016091 -97846536 - MIR SINE MIR -64 144 30 502 286 50 0 chr9 20016481 20016621 -97846006 - MIR SINE MIR -5 257 111 191 298 0 0 chr9 20017552 20017599 -97845028 + L2 LINE L2 3221 3267 -5 885 270 4 13 chr9 20017615 20017841 -97844786 + MIR SINE MIR 2 225 -37 1200 268 27 27 chr9 20018060 20018471 -97844156 + L1ME4a LINE L1 5494 5904 -217 342 261 72 29 chr9 20018495 20018633 -97843994 + L1ME4a LINE L1 5973 6116 -5 310 175 18 0 chr9 20019509 20019566 -97843061 - L2 LINE L2 0 3313 3256 642 175 0 0 chr9 20020122 20020236 -97842391 + FLAM_A SINE Alu 24 137 -5 242 273 18 0 chr9 20020380 20020435 -97842192 + L2 LINE L2 2928 2983 -330 5659 113 55 60 chr9 20020453 20021440 -97841187 - THE1C-int LTR MaLR -598 982 1 1934 167 27 19 chr9 20021440 20021812 -97840815 - THE1C LTR MaLR 0 375 1 658 288 169 47 chr9 20022941 20023386 -97839241 - L2 LINE L2 -11 3302 2804 1577 174 16 44 chr9 20023439 20023874 -97838753 + AluJo SINE Alu 1 426 0 340 301 101 27 chr9 20023876 20024095 -97838532 - L2 LINE L2 -559 2755 2521 437 283 9 0 chr9 20024224 20024330 -97838297 + MIR3 SINE MIR 95 201 -7 201 251 106 73 chr9 20025057 20025236 -97837391 - L2 LINE L2 -19 3294 3110 250 258 0 32 chr9 20025247 20025309 -97837318 + L2 LINE L2 3174 3233 -39 2074 209 114 10 chr9 20025337 20025829 -97836798 + MER119 DNA MER1_type 41 583 0 2209 111 3 0 chr9 20026693 20026990 -97835637 + AluSq SINE Alu 4 301 -12 265 334 59 8 chr9 20027072 20027192 -97835435 + MIR SINE MIR 4 141 -67 264 248 105 40 chr9 20027250 20027403 -97835224 + L1MC/D LINE L1 5726 5885 -302 197 365 29 0 chr9 20027704 20027808 -97834819 + MIR SINE MIR 124 230 -32 1996 168 34 11 chr9 20027838 20028219 -97834408 + MLT1B LTR MaLR 1 390 0 429 236 27 18 chr9 20029508 20029618 -97833009 + MIR SINE MIR 63 173 -89 345 320 64 32 chr9 20030618 20030774 -97831853 - MIR SINE MIR -32 230 70 582 182 10 0 chr9 20031784 20031883 -97830744 - FRAM SINE Alu -22 154 55 189 0 0 0 chr9 20033095 20033116 -97829511 + (A)n Simple_repeat Simple_repeat 1 21 0 3131 192 26 12 chr9 20033535 20034177 -97828450 - MER82 DNA MER2_type -1 652 2 257 263 73 56 chr9 20034295 20034527 -97828100 + L1MEd LINE L1 914 1149 -4970 385 323 64 38 chr9 20034536 20034929 -97827698 + HAL1 LINE L1 1301 1703 -804 216 97 0 0 chr9 20035005 20035036 -97827591 + (TATG)n Simple_repeat Simple_repeat 4 34 0 691 276 48 99 chr9 20035055 20035282 -97827345 + MLT1I LTR MaLR 28 228 -181 368 288 163 0 chr9 20035282 20035442 -97827185 + MER5A DNA MER1_type 4 189 0 691 276 48 99 chr9 20035442 20035609 -97827018 + MLT1I LTR MaLR 228 402 -7 1060 224 37 58 chr9 20035621 20035916 -97826711 + MLT1E2 LTR MaLR 1 289 -337 430 241 45 22 chr9 20036381 20036518 -97826109 - L1ME LINE L1 -577 5572 5436 * 449 298 152 3 chr9 20036516 20036805 -97825822 - L1ME LINE L1 -2325 3804 3473 21 0 0 0 chr9 20036810 20036831 -97825796 + AT_rich Low_complexity Low_complexity 1 21 0 804 228 141 0 chr9 20036840 20037046 -97825581 + MIR SINE MIR 2 236 -26 914 277 136 23 chr9 20037302 20038187 -97824440 - L1ME LINE L1 -2919 3210 2226 21 36 0 0 chr9 20038187 20038215 -97824412 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr9 20038292 20038335 -97824292 + AT_rich Low_complexity Low_complexity 1 43 0 303 317 62 57 chr9 20038347 20038695 -97823932 - L1MEc LINE L1 -3987 2168 1832 393 329 37 51 chr9 20038785 20039001 -97823626 - L1MEc LINE L1 -4618 1692 1480 311 289 6 69 chr9 20039171 20039330 -97823297 - HAL1 LINE L1 -899 1608 1460 237 211 18 18 chr9 20039398 20039455 -97823172 - L1MEc LINE L1 -4877 1242 1186 462 318 52 47 chr9 20039477 20040012 -97822615 - L1MEc LINE L1 -5025 1094 557 1970 181 24 3 chr9 20040208 20040590 -97822037 - L1MC1 LINE L1 -11 6322 5933 300 309 85 58 chr9 20040605 20040981 -97821646 - L1MEc LINE L1 -5732 387 2 185 241 123 118 chr9 20041039 20041242 -97821385 - L2 LINE L2 -99 3173 2970 387 21 0 0 chr9 20041450 20041498 -97821129 + L1PA6 LINE L1 6102 6149 -5 30 27 0 0 chr9 20042299 20042336 -97820291 + AT_rich Low_complexity Low_complexity 1 37 0 31510 107 12 59 chr9 20043519 20049974 -97812653 - L1PA7 LINE L1 -15 6139 1 22 0 0 0 chr9 20051058 20051080 -97811547 + AT_rich Low_complexity Low_complexity 1 22 0 185 272 174 11 chr9 20051235 20051327 -97811300 + L2 LINE L2 3139 3245 -27 792 289 34 78 chr9 20051780 20052266 -97810361 - L2 LINE L2 -2 3270 2818 755 232 186 65 chr9 20052273 20052467 -97810160 - L2 LINE L2 -616 2698 2529 1089 177 0 16 chr9 20052467 20052659 -97809968 + MER5A DNA MER1_type 1 189 0 755 232 186 65 chr9 20052659 20052677 -97809950 - L2 LINE L2 -785 2529 2515 1937 140 31 3 chr9 20052677 20052969 -97809658 + AluSx SINE Alu 1 300 -12 755 232 186 65 chr9 20052969 20053125 -97809502 - L2 LINE L2 -799 2515 2284 612 160 0 50 chr9 20053125 20053244 -97809383 - MER44D DNA MER2_type 0 705 593 240 130 182 0 chr9 20053290 20053367 -97809260 - MER44D DNA MER2_type -104 601 511 884 154 6 39 chr9 20053478 20053634 -97808993 - MER44D DNA MER2_type -188 421 1 228 220 0 20 chr9 20053634 20053684 -97808943 - L2 LINE L2 -1029 2285 2237 611 139 35 134 chr9 20055572 20055744 -97806883 + BC200 scRNA scRNA 2 156 -44 413 278 30 0 chr9 20057150 20057283 -97805344 - MER110 LTR ERV1 -28 463 327 2144 119 0 7 chr9 20057482 20057784 -97804843 + AluSx SINE Alu 1 300 -12 276 53 0 0 chr9 20059791 20059829 -97802798 + (TG)n Simple_repeat Simple_repeat 2 39 0 340 364 14 14 chr9 20060922 20061062 -97801565 - MIR3 SINE MIR -65 143 4 244 277 64 21 chr9 20061754 20061848 -97800779 - MIR3 SINE MIR 0 208 111 312 237 0 13 chr9 20062074 20062150 -97800477 - MIR SINE MIR -109 153 79 347 280 11 21 chr9 20062217 20062310 -97800317 - MER5B DNA MER1_type -1 177 86 1925 153 0 0 chr9 20062414 20062708 -97799919 + AluSx SINE Alu 1 294 -18 296 256 58 81 chr9 20062715 20062887 -97799740 + MIR SINE MIR 49 216 -46 194 234 309 21 chr9 20063259 20063353 -97799274 - MIR3 SINE MIR -28 180 60 625 285 86 5 chr9 20063695 20063881 -97798746 + MIR SINE MIR 13 213 -49 3412 5 0 0 chr9 20063883 20064262 -97798365 - L1PA2 LINE L1 -445 5710 5332 3892 20 0 0 chr9 20064265 20064717 -97797910 + L1PA2 LINE L1 5702 6153 -2 21 0 0 0 chr9 20065103 20065124 -97797503 + AT_rich Low_complexity Low_complexity 1 21 0 277 313 60 12 chr9 20065753 20065836 -97796791 - L2 LINE L2 -47 3225 3139 1519 225 38 26 chr9 20066001 20066419 -97796208 - MLT1C LTR MaLR -44 423 1 4116 211 32 35 chr9 20066423 20067373 -97795254 - MLT1C-int LTR MaLR -4 1367 421 1962 159 32 51 chr9 20067377 20067561 -97795066 + THE1B LTR MaLR 1 177 -187 2114 106 0 3 chr9 20067561 20067907 -97794720 + AluY SINE Alu 1 345 0 1962 159 32 51 chr9 20067907 20068092 -97794535 + THE1B LTR MaLR 177 364 0 627 142 0 9 chr9 20068092 20068198 -97794429 + THE1B-int LTR MaLR 1 105 -1475 * 6591 110 8 4 chr9 20068169 20069107 -97793520 + THE1B-int LTR MaLR 640 1580 0 2259 136 28 17 chr9 20069107 20069467 -97793160 + THE1B LTR MaLR 1 364 0 666 229 0 0 chr9 20069474 20069614 -97793013 - MLT1C-int LTR MaLR -958 413 274 1040 209 30 0 chr9 20069615 20069816 -97792811 + MLT2B3 LTR ERVL 1 207 -347 646 191 17 0 chr9 20069817 20069932 -97792695 + MSTD LTR MaLR 241 357 -39 5127 169 5 18 chr9 20070035 20071134 -97791493 + L1P4 LINE L1 4360 5445 -716 * 5582 160 26 1 chr9 20071129 20072592 -97790035 - L1MA4 LINE L1 -59 6241 4745 345 100 0 0 chr9 20072595 20072645 -97789982 + (TA)n Simple_repeat Simple_repeat 2 51 0 1617 139 128 0 chr9 20072645 20072903 -97789724 - AluSx SINE Alu -11 291 1 2454 171 15 4 chr9 20072906 20073385 -97789242 - L1MA4 LINE L1 -1596 4550 4067 40204 41 1 1 chr9 20073486 20078402 -97784225 - L1P LINE L1 -1233 4913 1 356 270 18 9 chr9 20078469 20078580 -97784047 + L3b LINE CR1 1370 1481 -102 422 277 21 21 chr9 20078679 20078820 -97783807 + MIR SINE MIR 66 206 -56 352 290 0 61 chr9 20079007 20079138 -97783489 + 7SK RNA RNA 3 125 -68 31 26 0 0 chr9 20079747 20079785 -97782842 + AT_rich Low_complexity Low_complexity 1 38 0 1798 126 28 0 chr9 20079997 20080251 -97782376 + AluSq SINE Alu 51 311 -2 1920 169 50 0 chr9 20080309 20080652 -97781975 + MER47A DNA MER2_type 7 366 0 762 193 0 15 chr9 20081350 20081485 -97781142 + FLAM_C SINE Alu 1 133 0 2093 131 0 3 chr9 20081800 20082091 -97780536 + AluSx SINE Alu 1 290 -22 368 341 82 0 chr9 20082305 20082440 -97780187 - L2 LINE L2 0 3272 3127 194 109 43 0 chr9 20083477 20083523 -97779104 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 375 23 0 0 chr9 20083661 20083705 -97778922 + (A)n Simple_repeat Simple_repeat 1 44 0 2375 76 7 0 chr9 20084214 20084516 -97778111 + AluY SINE Alu 1 304 -7 2474 54 0 0 chr9 20085839 20086137 -97776490 - AluY SINE Alu -13 298 1 528 285 59 19 chr9 20086579 20086835 -97775792 - L1ME LINE L1 -297 5824 5559 2229 119 0 6 chr9 20087346 20087657 -97774970 + AluSx SINE Alu 1 309 -3 254 235 20 0 chr9 20087927 20087978 -97774649 + MIR3 SINE MIR 106 157 -51 22 80 0 0 chr9 20089993 20090043 -97772584 + AT_rich Low_complexity Low_complexity 1 50 0 211 220 0 20 chr9 20091884 20091934 -97770693 + GA-rich Low_complexity Low_complexity 3 51 0 188 425 0 0 chr9 20092614 20092687 -97769940 + MIR SINE MIR 76 148 -60 40 37 0 0 chr9 20092752 20092806 -97769821 + AT_rich Low_complexity Low_complexity 1 54 0 304 185 0 49 chr9 20093758 20093839 -97768788 - L1ME4a LINE L1 -75 6046 5970 1126 269 0 4 chr9 20095276 20095532 -97767095 + MIR SINE MIR 2 256 -6 396 304 65 18 chr9 20096415 20096583 -97766044 + MIR SINE MIR 53 228 -34 202 250 0 0 chr9 20096603 20096651 -97765976 - MIR SINE MIR -130 132 85 344 254 94 35 chr9 20096675 20096850 -97765777 - MIR SINE MIR -55 207 17 201 312 75 54 chr9 20097724 20097817 -97764810 - MIR3 SINE MIR -100 108 14 245 292 169 0 chr9 20098555 20098644 -97763983 - L2 LINE L2 -5 3267 3164 1786 166 14 56 chr9 20098687 20099043 -97763584 + MER2 DNA MER2_type 1 341 -3 2106 80 47 0 chr9 20099634 20099909 -97762718 + AluY SINE Alu 1 288 -23 289 279 121 6 chr9 20100240 20100405 -97762222 - L1ME4a LINE L1 -3 6118 5935 428 258 47 38 chr9 20100447 20100660 -97761967 - L1ME4a LINE L1 -161 5960 5746 351 44 0 0 chr9 20102053 20102098 -97760529 + (CA)n Simple_repeat Simple_repeat 2 46 0 30 83 0 0 chr9 20102497 20102569 -97760058 + AT_rich Low_complexity Low_complexity 1 72 0 279 283 28 0 chr9 20104837 20104943 -97757684 + (TA)n Simple_repeat Simple_repeat 2 110 0 279 164 0 73 chr9 20104948 20105003 -97757624 - L3 LINE CR1 -97 1480 1430 22 0 0 0 chr9 20110550 20110572 -97752055 + AT_rich Low_complexity Low_complexity 1 22 0 425 234 11 26 chr9 20110748 20110881 -97751746 + MIR SINE MIR 107 236 -26 2080 98 16 26 chr9 20111088 20111394 -97751233 - AluSx SINE Alu -9 303 1 1733 169 3 10 chr9 20113779 20114087 -97748540 - AluJb SINE Alu -6 306 1 6532 199 47 14 chr9 20114198 20115871 -97746756 - L1 LINE L1 -2390 5175 3441 6678 123 7 3 chr9 20115875 20116832 -97745795 - HSMAR1 DNA Mariner 0 1287 327 4178 149 12 0 chr9 20116832 20117563 -97745064 - L1 LINE L1 -1368 4960 4221 2750 197 16 16 chr9 20117562 20118208 -97744419 - L1 LINE L1 -2916 3412 2767 * 2920 260 75 12 chr9 20118307 20119414 -97743213 - L1 LINE L1 -4097 1231 539 1088 306 14 43 chr9 20119871 20120290 -97742337 - L1 LINE L1 -5538 711 305 346 252 19 29 chr9 20120579 20120682 -97741945 + MIR SINE MIR 53 154 -108 391 98 0 0 chr9 20120740 20120791 -97741836 - AluSg/x SINE Alu -113 189 139 392 242 48 32 chr9 20120813 20120937 -97741690 - MIR SINE MIR -31 231 106 325 291 13 13 chr9 20120948 20121027 -97741600 - L2 LINE L2 0 3313 3235 354 254 23 48 chr9 20122423 20122460 -97740167 - MIR SINE MIR -28 180 144 195 42 0 0 chr9 20122460 20122484 -97740143 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 354 254 23 48 chr9 20122484 20122608 -97740019 - MIR SINE MIR -64 144 20 277 327 18 36 chr9 20123897 20124007 -97738620 + Charlie8 DNA MER1_type 1 108 -2309 35 0 0 0 chr9 20124007 20124042 -97738585 + AT_rich Low_complexity Low_complexity 1 35 0 1126 61 0 0 chr9 20124106 20124238 -97738389 + AluY SINE Alu 1 132 -179 21 0 0 0 chr9 20124238 20124259 -97738368 + AT_rich Low_complexity Low_complexity 1 21 0 388 264 295 5 chr9 20124502 20124695 -97737932 - MIR SINE MIR -12 250 2 340 166 55 43 chr9 20125921 20126084 -97736543 + (TA)n Simple_repeat Simple_repeat 1 165 0 569 286 62 22 chr9 20127396 20127574 -97735053 - MIR SINE MIR -47 215 31 684 67 0 0 chr9 20127577 20127667 -97734960 + (CTATG)n Simple_repeat Simple_repeat 5 94 0 795 140 134 0 chr9 20127919 20128076 -97734551 - L1MB3 LINE L1 -1 6182 6005 2370 100 42 17 chr9 20128076 20128635 -97733992 - LTR10E LTR ERV1 0 633 3 2323 175 28 13 chr9 20128637 20129101 -97733526 - L1MB3 LINE L1 -172 6008 5538 198 0 0 0 chr9 20131798 20131820 -97730807 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3127 56 0 0 chr9 20131821 20132213 -97730414 - L1PA4 LINE L1 -19 6136 5745 196 268 106 65 chr9 20134045 20134168 -97728459 - MIR SINE MIR -26 236 109 325 229 121 0 chr9 20136655 20136738 -97725889 - L2 LINE L2 0 3313 3221 5724 107 13 27 chr9 20136763 20138127 -97724500 + L1PA12 LINE L1 4799 6164 -4 422 291 167 24 chr9 20138131 20138406 -97724221 - L2 LINE L2 -221 3092 2783 230 397 50 7 chr9 20138594 20138735 -97723892 + MIR SINE MIR 46 192 -70 305 293 50 2 chr9 20139790 20139886 -97722741 + MIR SINE MIR 38 136 -72 402 318 31 31 chr9 20139972 20140167 -97722460 + MER117 DNA MER1_type 3 197 0 1646 167 8 0 chr9 20140361 20140619 -97722008 - AluSq SINE Alu -52 261 2 213 238 0 0 chr9 20142522 20142564 -97720063 + (CATA)n Simple_repeat Simple_repeat 2 43 0 653 239 190 81 chr9 20142811 20143254 -97719373 - MLT1J LTR MaLR -20 491 1 468 272 73 7 chr9 20143293 20143429 -97719198 - L2 LINE L2 -194 3078 2934 207 0 0 0 chr9 20144311 20144334 -97718293 + (T)n Simple_repeat Simple_repeat 1 23 0 456 290 74 68 chr9 20144423 20144733 -97717894 + L2 LINE L2 2986 3297 -16 255 228 268 8 chr9 20145658 20145781 -97716846 + MIR SINE MIR 65 219 -43 396 0 0 0 chr9 20145852 20145896 -97716731 + (CA)n Simple_repeat Simple_repeat 1 44 0 426 297 0 16 chr9 20145967 20146095 -97716532 - L2 LINE L2 -1 3312 3187 2086 129 10 6 chr9 20147179 20147490 -97715137 - AluSx SINE Alu 0 312 1 696 279 67 0 chr9 20147555 20147763 -97714864 - MIR SINE MIR -22 240 19 24 0 0 0 chr9 20148475 20148499 -97714128 + AT_rich Low_complexity Low_complexity 1 24 0 832 311 157 25 chr9 20150428 20151085 -97711542 - L2 LINE L2 -4 3309 2532 1033 82 5 33 chr9 20151099 20151283 -97711344 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1792 162 0 21 chr9 20151285 20151575 -97711052 - AluJb SINE Alu -28 284 1 5509 243 39 17 chr9 20151575 20151678 -97710949 - L1MC/D LINE L1 -743 5472 5373 1274 211 106 81 chr9 20151678 20152171 -97710456 - MLT1D LTR MaLR 0 505 1 5509 243 39 17 chr9 20152171 20153147 -97709480 - L1MC/D LINE L1 -842 5373 4414 916 193 23 29 chr9 20153147 20153318 -97709309 - FAM SINE Alu -5 170 1 5509 243 39 17 chr9 20153318 20154173 -97708454 - L1MC/D LINE L1 -1801 4414 3579 3032 261 31 15 chr9 20154232 20155075 -97707552 - L1MC/D LINE L1 -5505 891 36 911 208 39 26 chr9 20155075 20155306 -97707321 - HsTC2 DNA Tc2 -404 1494 1261 640 264 0 0 chr9 20155299 20155447 -97707180 - HsTC2 DNA Tc2 -1750 148 1 * 315 270 135 9 chr9 20155455 20155566 -97707061 - L2 LINE L2 -796 2518 2394 25 0 0 0 chr9 20155783 20155808 -97706819 + AT_rich Low_complexity Low_complexity 1 25 0 233 250 76 54 chr9 20156352 20156444 -97706183 - 7SK RNA RNA -99 94 1 229 281 74 22 chr9 20156718 20156853 -97705774 + MER103 DNA DNA 3 144 -22 404 297 20 0 chr9 20156890 20156991 -97705636 + L2 LINE L2 3165 3267 -5 2031 114 7 24 chr9 20157605 20157903 -97704724 + AluSg SINE Alu 2 294 -16 428 256 44 44 chr9 20158257 20158417 -97704210 - MIR SINE MIR -6 256 97 1484 165 75 0 chr9 20158574 20158840 -97703787 + AluJb SINE Alu 1 286 -26 2218 105 10 3 chr9 20158850 20159144 -97703483 + AluSg SINE Alu 1 296 -14 344 118 15 0 chr9 20159144 20159212 -97703415 + (TA)n Simple_repeat Simple_repeat 2 70 0 259 333 9 9 chr9 20160589 20160700 -97701927 + CT-rich Low_complexity Low_complexity 5 115 0 26 64 0 0 chr9 20163905 20163952 -97698675 + AT_rich Low_complexity Low_complexity 1 47 0 363 343 146 27 chr9 20164838 20165530 -97697097 + L2 LINE L2 2280 3055 -217 322 338 62 31 chr9 20165665 20165825 -97696802 - MIR SINE MIR -55 153 18 5411 146 43 8 chr9 20166592 20168563 -97694064 - L1MA8 LINE L1 -5 6286 4249 23 0 0 0 chr9 20168650 20168673 -97693954 + AT_rich Low_complexity Low_complexity 1 23 0 40886 35 21 1 chr9 20168673 20174704 -97687923 - L1PA3 LINE L1 0 6155 2 195 69 0 0 chr9 20175247 20175276 -97687351 + (A)n Simple_repeat Simple_repeat 1 29 0 285 98 0 0 chr9 20177341 20177382 -97685245 + (TA)n Simple_repeat Simple_repeat 2 42 0 2115 104 3 17 chr9 20177382 20177669 -97684958 - AluSq SINE Alu -30 283 1 1342 172 34 4 chr9 20177698 20177931 -97684696 + AluSg/x SINE Alu 73 312 0 180 0 0 0 chr9 20177931 20177951 -97684676 + (TA)n Simple_repeat Simple_repeat 2 21 0 683 102 19 0 chr9 20177953 20178061 -97684566 - MER41B LTR ERV1 -524 111 2 186 133 0 0 chr9 20178762 20178792 -97683835 + (A)n Simple_repeat Simple_repeat 1 30 0 508 249 234 19 chr9 20180925 20181134 -97681493 + MIR SINE MIR 9 262 0 498 324 85 47 chr9 20183092 20183119 -97679508 - L2 LINE L2 -194 3078 3054 1940 161 135 5 chr9 20183119 20183498 -97679129 - MSTA LTR MaLR 0 428 1 7694 157 93 37 chr9 20183500 20185062 -97677565 - MSTA-int LTR MaLR -2 1649 1 1999 135 143 8 chr9 20185062 20185439 -97677188 - MSTA LTR MaLR 0 428 1 498 324 85 47 chr9 20185439 20185883 -97676744 - L2 LINE L2 -217 3055 2569 445 297 90 7 chr9 20185890 20186035 -97676592 + MIR SINE MIR 2 158 -104 515 181 7 49 chr9 20186035 20186107 -97676520 - LTR37A LTR ERV1 0 426 360 2144 102 0 14 chr9 20186107 20186423 -97676204 - AluSc SINE Alu 0 312 1 515 181 7 49 chr9 20186423 20186493 -97676134 - LTR37A LTR ERV1 -66 360 289 764 275 37 60 chr9 20186862 20187160 -97675467 - L2 LINE L2 -730 2584 2294 528 242 50 25 chr9 20187195 20187356 -97675271 + MIR SINE MIR 88 252 -10 552 263 66 89 chr9 20187391 20187529 -97675098 - L2 LINE L2 -1044 2270 2130 2113 122 0 17 chr9 20187529 20187824 -97674803 - AluSx SINE Alu -20 292 3 552 263 66 89 chr9 20187824 20188035 -97674592 - L2 LINE L2 -1184 2130 1929 1785 180 0 22 chr9 20188553 20188870 -97673757 - AluJo SINE Alu -2 310 1 1055 204 68 30 chr9 20190048 20190415 -97672212 - LTR37A LTR ERV1 0 426 46 2323 111 0 10 chr9 20190450 20190757 -97671870 - AluSx SINE Alu -5 307 4 2298 106 25 33 chr9 20191137 20191504 -97671123 - THE1B LTR MaLR 0 364 1 2118 97 24 0 chr9 20192007 20192296 -97670331 - AluSx SINE Alu -16 296 1 321 26 0 0 chr9 20192938 20192976 -97669651 + (TA)n Simple_repeat Simple_repeat 2 39 0 891 203 62 75 chr9 20193338 20193565 -97669062 + MER58A DNA MER1_type 1 224 0 24 0 0 0 chr9 20194545 20194569 -97668058 + AT_rich Low_complexity Low_complexity 1 24 0 2565 154 26 11 chr9 20195150 20195636 -97666991 - MER41B LTR ERV1 -12 597 100 689 270 28 22 chr9 20196773 20196951 -97665676 - MIR3 SINE MIR -24 184 6 22 0 0 0 chr9 20198582 20198604 -97664023 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr9 20199851 20199877 -97662750 + (T)n Simple_repeat Simple_repeat 1 26 0 40734 34 24 1 chr9 20200420 20206476 -97656151 + L1PA3 LINE L1 2 6155 0 1885 148 3 57 chr9 20208513 20208844 -97653783 - AluSq SINE Alu 0 313 1 200 303 76 0 chr9 20209301 20209367 -97653260 - L3b LINE CR1 -88 1495 1425 643 301 40 10 chr9 20209416 20209615 -97653012 + MIR SINE MIR 58 262 0 2147 106 30 13 chr9 20209682 20209983 -97652644 + AluSx SINE Alu 1 306 -6 404 276 90 19 chr9 20212243 20212399 -97650228 + MIR3 SINE MIR 35 201 -7 292 359 11 0 chr9 20213801 20213893 -97648734 + L2 LINE L2 3180 3272 0 2454 74 0 0 chr9 20214090 20214386 -97648241 - AluY SINE Alu -15 296 1 310 223 0 64 chr9 20214932 20215026 -97647601 - HAL1b LINE L1 -91 1257 1170 251 283 43 11 chr9 20215162 20215254 -97647373 + MIR SINE MIR 61 155 -107 1766 162 3 30 chr9 20215403 20215705 -97646922 + AluJb SINE Alu 3 296 -16 2072 130 0 0 chr9 20216978 20217312 -97645315 + AluSx SINE Alu 1 334 0 293 335 112 23 chr9 20217709 20218120 -97644507 - L2 LINE L2 -78 3194 2681 232 242 0 16 chr9 20218381 20218443 -97644184 + MIR3 SINE MIR 145 205 -3 350 222 89 22 chr9 20218809 20218899 -97643728 - L2 LINE L2 -5 3267 3172 380 258 79 53 chr9 20220421 20220461 -97642166 + MIR SINE MIR 55 92 -170 2143 131 52 120 chr9 20220461 20220531 -97642096 - MSTA LTR MaLR 0 428 355 1713 149 4 0 chr9 20220531 20220779 -97641848 + AluJb SINE Alu 3 251 -61 2143 131 52 120 chr9 20220779 20221167 -97641460 - MSTA LTR MaLR -73 355 1 380 258 79 53 chr9 20221167 20221316 -97641311 + MIR SINE MIR 92 249 -13 195 184 0 53 chr9 20221855 20221931 -97640696 + GA-rich Low_complexity Low_complexity 1 72 0 454 325 94 9 chr9 20222025 20222237 -97640390 - MIR SINE MIR -2 260 31 196 256 81 47 chr9 20222318 20222404 -97640223 - L2 LINE L2 -38 3275 3187 464 281 176 10 chr9 20223194 20223393 -97639234 + MIR SINE MIR 19 250 -12 211 265 143 118 chr9 20223660 20223905 -97638722 - L2 LINE L2 -10 3262 3012 817 125 0 0 chr9 20224919 20225031 -97637596 - AluJb SINE Alu 0 312 201 21 0 0 0 chr9 20225073 20225094 -97637533 + AT_rich Low_complexity Low_complexity 1 21 0 2438 98 0 0 chr9 20226217 20226524 -97636103 + AluSp SINE Alu 1 307 -6 196 332 33 10 chr9 20226883 20226983 -97635644 - MIR SINE MIR -48 160 59 897 225 38 10 chr9 20227046 20227255 -97635372 + MIR SINE MIR 12 226 -36 946 226 77 14 chr9 20228157 20228378 -97634249 + MIR SINE MIR 28 262 0 357 259 48 88 chr9 20228378 20228525 -97634102 - MIR SINE MIR -100 162 22 314 141 0 16 chr9 20229049 20229113 -97633514 + (TG)n Simple_repeat Simple_repeat 2 64 0 2165 121 3 10 chr9 20229643 20229957 -97632670 - AluSx SINE Alu 0 312 1 500 374 116 14 chr9 20230036 20230330 -97632297 + L2 LINE L2 2949 3272 0 686 285 115 12 chr9 20230744 20230997 -97631630 - MLT1B LTR MaLR 0 467 189 1072 161 24 29 chr9 20231225 20231430 -97631197 - MLT1B LTR MaLR -186 204 1 301 269 77 39 chr9 20233188 20233318 -97629309 + MIR SINE MIR 88 222 -40 188 0 0 0 chr9 20233692 20233715 -97628912 - L2 LINE L2 -7 3265 3243 619 304 84 17 chr9 20233733 20233970 -97628657 - MIR SINE MIR -1 261 9 4561 216 83 9 chr9 20233976 20235051 -97627576 - L1MC4 LINE L1 -431 7611 6458 191 333 10 42 chr9 20235298 20235394 -97627233 - L2 LINE L2 -560 2754 2662 21 0 0 0 chr9 20235955 20235976 -97626651 + AT_rich Low_complexity Low_complexity 1 21 0 576 245 97 7 chr9 20236346 20236501 -97626126 + MIR SINE MIR 35 203 -59 404 286 75 12 chr9 20236710 20236871 -97625756 + MIR SINE MIR 92 262 0 931 290 38 9 chr9 20237483 20237800 -97624827 - MER46C DNA MER2_type -6 332 7 431 337 98 62 chr9 20237895 20237949 -97624678 - L2 LINE L2 -22 3250 3199 2202 190 53 22 chr9 20237949 20238402 -97624225 - MLT1C LTR MaLR 0 467 1 431 337 98 62 chr9 20238402 20238623 -97624004 - L2 LINE L2 -73 3199 2965 1790 203 90 15 chr9 20239322 20239789 -97622838 - L1ME3A LINE L1 -5 6165 5664 2065 215 108 21 chr9 20239810 20240327 -97622300 - MLT1F1 LTR MaLR 0 567 6 588 266 53 39 chr9 20240503 20240710 -97621917 + MIR SINE MIR 1 210 -52 1103 192 56 23 chr9 20242920 20243134 -97619493 + MER58A DNA MER1_type 1 221 -3 316 167 0 0 chr9 20243390 20243438 -97619189 - MER94 DNA DNA -83 51 4 238 261 29 14 chr9 20243823 20243892 -97618735 - MIR SINE MIR -77 185 116 300 305 183 0 chr9 20243972 20244103 -97618524 - MIR3 SINE MIR -26 182 28 257 230 10 50 chr9 20244910 20245010 -97617617 - L1ME4a LINE L1 -42 6079 5984 1482 129 9 0 chr9 20245020 20245054 -97617573 + AluSg/x SINE Alu 89 121 -189 423 0 0 0 chr9 20245054 20245101 -97617526 + (TA)n Simple_repeat Simple_repeat 1 47 0 1482 129 9 0 chr9 20245101 20245283 -97617344 + AluSg/x SINE Alu 121 307 -3 234 0 0 0 chr9 20246277 20246303 -97616324 + (TCC)n Simple_repeat Simple_repeat 2 27 0 565 232 28 14 chr9 20246911 20247053 -97615574 - MIR SINE MIR -23 239 96 2291 192 72 11 chr9 20247325 20247800 -97614827 - MLT1D LTR MaLR 0 505 2 234 249 28 77 chr9 20249197 20249378 -97613249 + (CAAA)n Simple_repeat Simple_repeat 1 172 0 240 200 33 125 chr9 20249515 20249635 -97612992 + MER103 DNA DNA 56 164 -2 509 314 124 23 chr9 20249950 20250208 -97612419 + L2 LINE L2 2989 3272 0 418 278 78 9 chr9 20251202 20251317 -97611310 - L2 LINE L2 -2 3270 3148 7253 126 34 10 chr9 20251492 20253054 -97609573 - L1MA1 LINE L1 -2 6300 4674 231 36 0 0 chr9 20253054 20253082 -97609545 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 7253 126 34 10 chr9 20253082 20253642 -97608985 - L1MA1 LINE L1 -1628 4674 4129 240 388 41 6 chr9 20253642 20253812 -97608815 - L2 LINE L2 -237 3035 2860 816 290 128 32 chr9 20254870 20255246 -97607381 - L2 LINE L2 -76 3237 2826 243 234 39 52 chr9 20255265 20255342 -97607285 + L2 LINE L2 3238 3313 0 858 245 95 126 chr9 20255390 20255647 -97606980 - L2 LINE L2 -493 2821 2558 2247 155 5 37 chr9 20255647 20256022 -97606605 - MLT1A1 LTR MaLR -2 363 1 858 245 95 126 chr9 20256022 20256385 -97606242 - L2 LINE L2 -756 2558 2220 187 337 43 11 chr9 20256770 20256862 -97605765 - L2 LINE L2 -4 3309 3215 231 230 70 110 chr9 20257537 20257637 -97604990 + MIR SINE MIR 81 176 -86 21 57 0 0 chr9 20257724 20257759 -97604868 + AT_rich Low_complexity Low_complexity 1 35 0 216 214 0 0 chr9 20258142 20258184 -97604443 + MER5B DNA MER1_type 2 43 -135 611 199 8 15 chr9 20258230 20258361 -97604266 - MER5B DNA MER1_type -48 130 1 1382 248 117 30 chr9 20258695 20259158 -97603469 - MLT1J LTR MaLR -4 507 5 252 0 0 0 chr9 20260962 20260990 -97601637 + (T)n Simple_repeat Simple_repeat 1 28 0 376 289 163 0 chr9 20262764 20262930 -97599697 - MIR SINE MIR -12 250 58 245 280 140 47 chr9 20263134 20263327 -97599300 - MIR SINE MIR -21 241 31 451 272 118 35 chr9 20263471 20263699 -97598928 - MIR SINE MIR 0 262 16 276 320 10 0 chr9 20264318 20264415 -97598212 + MIR3 SINE MIR 87 184 -24 249 253 11 35 chr9 20265011 20265098 -97597529 + MER103 DNA DNA 81 165 -1 357 290 89 0 chr9 20266189 20266313 -97596314 - L2 LINE L2 -1 3271 3137 183 324 120 37 chr9 20266356 20266464 -97596163 - L2 LINE L2 0 3272 3156 291 309 280 16 chr9 20266466 20266709 -97595918 + L2 LINE L2 3006 3312 -1 * 732 314 104 21 chr9 20266703 20267233 -97595394 - L2 LINE L2 -121 3192 2609 284 295 102 42 chr9 20267430 20267596 -97595031 - MER5A DNA MER1_type -11 178 3 446 169 12 12 chr9 20267749 20267832 -97594795 - MIR SINE MIR -135 127 45 689 169 66 0 chr9 20267848 20267984 -97594643 + MER58C DNA MER1_type 71 215 0 259 268 114 82 chr9 20267984 20268290 -97594337 + L2 LINE L2 2661 2976 -338 205 200 0 0 chr9 20268475 20268515 -97594112 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 512 172 172 108 chr9 20268831 20268994 -97593633 - MIR SINE MIR -10 252 72 2220 98 0 3 chr9 20268994 20269281 -97593346 + AluSc SINE Alu 6 291 -18 512 172 172 108 chr9 20269281 20269320 -97593307 - MIR SINE MIR -190 72 37 336 266 108 36 chr9 20270463 20270602 -97592025 + MIR SINE MIR 10 158 -104 763 181 84 101 chr9 20271699 20271926 -97590701 - MER58A DNA MER1_type 0 224 2 218 315 198 0 chr9 20272599 20272710 -97589917 + MIR SINE MIR 59 191 -71 1117 180 34 56 chr9 20273322 20273589 -97589038 - MIR SINE MIR -1 261 1 281 232 110 50 chr9 20274294 20274425 -97588202 - MIR SINE MIR -62 146 36 218 392 10 10 chr9 20275623 20275720 -97586907 + MIR3 SINE MIR 11 107 -101 1457 178 16 0 chr9 20278287 20278540 -97584087 + AluJo SINE Alu 56 312 0 1862 168 0 25 chr9 20278732 20279047 -97583580 - AluSx SINE Alu -5 307 1 235 315 120 37 chr9 20279653 20279761 -97582866 - L2 LINE L2 -5 3308 3192 303 286 175 32 chr9 20280307 20280461 -97582166 - MIR3 SINE MIR -25 183 8 650 266 48 19 chr9 20281724 20281941 -97580686 + MIR SINE MIR 31 251 -11 963 282 16 0 chr9 20282339 20282594 -97580033 + MIR SINE MIR 4 262 0 2372 111 0 0 chr9 20284206 20284513 -97578114 + AluSq SINE Alu 3 309 -4 399 210 40 20 chr9 20285374 20285474 -97577153 - L1MB7 LINE L1 -12 6172 6071 3519 117 35 8 chr9 20285488 20286003 -97576624 - L1PA14 LINE L1 -2 6159 5631 820 194 5 57 chr9 20286011 20286104 -97576523 - L1MB8 LINE L1 -2 6176 6080 1736 155 28 7 chr9 20286104 20286395 -97576232 + AluJo SINE Alu 1 297 -15 820 194 5 57 chr9 20286395 20286512 -97576115 - L1MB8 LINE L1 -98 6080 5977 791 239 45 45 chr9 20286725 20286968 -97575659 + MIR SINE MIR 1 243 -19 186 324 127 14 chr9 20287679 20287750 -97574877 - MIR3 SINE MIR -17 191 113 256 297 27 14 chr9 20287932 20288006 -97574621 - MIR3 SINE MIR -49 159 85 230 83 0 0 chr9 20288876 20288912 -97573715 - L1MA10 LINE L1 -1 6333 6298 * 235 128 0 0 chr9 20288883 20288922 -97573705 - L1MB7 LINE L1 -10 6174 6136 * 2422 191 19 13 chr9 20288920 20289391 -97573236 - L1MB8 LINE L1 -303 5881 5408 191 374 66 0 chr9 20289425 20289516 -97573111 + L2 LINE L2 3144 3240 -32 216 281 146 42 chr9 20289665 20289761 -97572866 - MIR SINE MIR -134 128 23 203 313 16 31 chr9 20290889 20291017 -97571610 + CT-rich Low_complexity Low_complexity 2 127 0 324 154 195 0 chr9 20291848 20291971 -97570656 + FRAM SINE Alu 11 157 -9 2741 192 86 4 chr9 20291971 20292654 -97569973 - L1MB8 LINE L1 -88 6090 5352 1017 186 144 168 chr9 20292701 20293207 -97569420 - MLT1E3 LTR MaLR -8 616 4 242 302 111 84 chr9 20293207 20293430 -97569197 - Charlie8 DNA MER1_type -2176 241 13 210 279 58 12 chr9 20293687 20293773 -97568854 + MIR3 SINE MIR 112 201 -7 364 257 164 14 chr9 20295121 20295288 -97567339 - MIR SINE MIR -2 260 61 245 317 24 30 chr9 20295319 20295486 -97567141 - MER117 DNA MER1_type -31 166 1 775 240 18 0 chr9 20295920 20296091 -97566536 - MLT1J1 LTR MaLR -270 176 3 2490 48 0 6 chr9 20297010 20297321 -97565306 + AluY SINE Alu 1 309 -2 384 210 22 101 chr9 20297817 20297955 -97564672 - MER5A DNA MER1_type -9 180 54 183 339 0 0 chr9 20298367 20298429 -97564198 - MER5A DNA MER1_type -120 69 8 340 327 46 26 chr9 20298441 20298594 -97564033 + MIR SINE MIR 23 178 -84 680 273 110 54 chr9 20298641 20299155 -97563472 - L2 LINE L2 -5 3308 2756 2331 111 3 0 chr9 20299155 20299462 -97563165 + AluSq SINE Alu 1 308 -5 680 273 110 54 chr9 20299462 20299694 -97562933 - L2 LINE L2 -557 2756 2538 2508 220 95 54 chr9 20300417 20301337 -97561290 + L1MDa LINE L1 18 1068 -5472 2104 230 49 30 chr9 20301331 20302207 -97560420 + L1M4 LINE L1 4066 5115 -1031 * 6775 169 38 23 chr9 20302209 20302615 -97560012 - L1 LINE L1 -1012 5134 4736 2271 101 7 0 chr9 20302615 20302911 -97559716 - AluSc SINE Alu -11 298 1 6775 169 38 23 chr9 20302911 20304019 -97558608 - L1 LINE L1 -1410 4736 3665 996 172 27 0 chr9 20304015 20304201 -97558426 + L1MA6 LINE L1 5143 5333 -813 * 2307 93 31 0 chr9 20304200 20304521 -97558106 + L1PA13 LINE L1 5812 6142 -21 3887 109 5 38 chr9 20304527 20305050 -97557577 + L1MA6 LINE L1 5313 5815 -485 1684 159 0 80 chr9 20305050 20305389 -97557238 + AluJb SINE Alu 1 312 0 3887 109 5 38 chr9 20305389 20305477 -97557150 + L1MA6 LINE L1 5815 5904 -396 2516 127 41 8 chr9 20305509 20305903 -97556724 - L1MA6 LINE L1 -5 6295 5889 1982 129 43 0 chr9 20305904 20306183 -97556444 - AluSx SINE Alu -20 292 2 396 125 0 14 chr9 20306184 20306256 -97556371 + L1MD2 LINE L1 6289 6359 0 252 0 0 0 chr9 20306368 20306396 -97556231 + (T)n Simple_repeat Simple_repeat 1 28 0 28 0 0 0 chr9 20306409 20306437 -97556190 + AT_rich Low_complexity Low_complexity 1 28 0 818 149 8 0 chr9 20306437 20306571 -97556056 - L1MA5A LINE L1 -10 6287 6153 258 281 110 12 chr9 20306923 20307005 -97555622 - L2 LINE L2 -46 3226 3137 1906 148 10 3 chr9 20308157 20308448 -97554179 + AluJb SINE Alu 1 293 -19 2223 121 0 0 chr9 20308821 20309119 -97553508 + AluSx SINE Alu 1 298 -14 323 309 39 73 chr9 20310492 20310759 -97551868 - L2 LINE L2 -276 2996 2737 1173 234 67 41 chr9 20310823 20311258 -97551369 - MLT1J1 LTR MaLR 0 446 1 410 271 132 7 chr9 20312292 20312436 -97550191 + MIR SINE MIR 84 245 -17 249 292 14 0 chr9 20313169 20313241 -97549386 + CT-rich Low_complexity Low_complexity 4 76 0 2121 122 3 3 chr9 20313355 20313651 -97548976 + AluSx SINE Alu 1 296 -16 494 68 27 0 chr9 20313651 20313725 -97548902 + (GGAA)n Simple_repeat Simple_repeat 1 76 0 2497 88 0 0 chr9 20314338 20314643 -97547984 - AluSg SINE Alu -5 305 1 795 209 147 29 chr9 20315225 20315536 -97547091 - L1ME3A LINE L1 -6 6164 5813 397 310 30 0 chr9 20316262 20316362 -97546265 + MIR SINE MIR 21 123 -139 25 0 0 0 chr9 20316808 20316833 -97545794 + AT_rich Low_complexity Low_complexity 1 25 0 370 297 180 2 chr9 20318110 20318281 -97544346 - MIR3 SINE MIR -3 205 5 237 275 9 37 chr9 20318293 20318402 -97544225 + L1MC4 LINE L1 6608 6713 -1329 195 315 72 27 chr9 20319039 20319150 -97543477 + MIR SINE MIR 129 244 -18 460 143 101 92 chr9 20320372 20320491 -97542136 + L1MC1 LINE L1 6201 6320 -13 358 311 50 0 chr9 20322239 20322358 -97540269 - MER117 DNA MER1_type 0 197 73 5264 138 33 1 chr9 20322872 20324059 -97538568 - L1P4 LINE L1 -518 5645 4429 517 252 14 7 chr9 20324118 20324145 -97538482 - L1MA10 LINE L1 -26 6308 6282 3172 234 74 35 chr9 20324145 20325157 -97537470 - L1ME1 LINE L1 -44 6191 5219 5200 121 8 0 chr9 20325157 20325875 -97536752 - L1PA16 LINE L1 -9 6157 5434 3172 234 74 35 chr9 20325875 20326779 -97535848 - L1ME1 LINE L1 -1016 5219 4194 1103 261 53 0 chr9 20326777 20327118 -97535509 - L1M4 LINE L1 -1011 5135 4777 * 591 263 124 11 chr9 20327119 20327305 -97535322 - L1ME1 LINE L1 -5804 592 386 963 180 16 22 chr9 20327306 20327489 -97535138 + MER58A DNA MER1_type 43 224 0 2342 116 45 25 chr9 20327652 20328007 -97534620 - THE1B LTR MaLR 0 364 3 384 22 0 0 chr9 20328008 20328053 -97534574 + (CA)n Simple_repeat Simple_repeat 2 46 0 234 0 0 0 chr9 20328163 20328189 -97534438 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1260 153 8 168 chr9 20328192 20328544 -97534083 + AluJo SINE Alu 1 296 -16 45290 38 1 1 chr9 20328684 20334832 -97527795 - L1PA3 LINE L1 -3 6152 8 394 327 10 0 chr9 20335647 20335751 -97526876 - L2 LINE L2 0 3272 3168 537 347 120 22 chr9 20335751 20336491 -97526136 - L2 LINE L2 0 3272 2480 1112 272 34 68 chr9 20336968 20337518 -97525109 - L2 LINE L2 0 3313 2783 344 222 120 26 chr9 20337833 20337950 -97524677 + MER5B DNA MER1_type 21 148 -30 1053 189 35 0 chr9 20338337 20338538 -97524089 - MER58A DNA MER1_type 0 224 17 269 321 9 37 chr9 20340543 20340652 -97521975 + MIR SINE MIR 157 262 0 4256 163 20 3 chr9 20341042 20341741 -97520886 - MER50 LTR ERV1 -23 711 1 852 246 96 17 chr9 20341796 20342036 -97520591 + MIR SINE MIR 4 262 0 183 295 89 27 chr9 20342360 20342472 -97520155 + MIR SINE MIR 88 206 -56 2561 149 259 14 chr9 20342867 20343451 -97519176 - LTR8A LTR ERV1 0 727 1 282 56 0 0 chr9 20343538 20343574 -97519053 + (TG)n Simple_repeat Simple_repeat 1 36 0 186 133 0 0 chr9 20343871 20343901 -97518726 + (CA)n Simple_repeat Simple_repeat 2 31 0 2104 125 20 0 chr9 20346108 20346405 -97516222 - AluSx SINE Alu -9 303 1 275 248 41 0 chr9 20346776 20346863 -97515764 - L1MC4 LINE L1 0 8041 7905 1567 247 126 25 chr9 20346912 20347908 -97514719 - L1MC4 LINE L1 -314 7728 6459 552 341 88 6 chr9 20348636 20348727 -97513900 + L1ME LINE L1 5391 5473 -648 2359 185 88 4 chr9 20348727 20349191 -97513436 - MLT1D LTR MaLR 0 505 3 552 341 88 6 chr9 20349191 20349451 -97513176 + L1ME LINE L1 5473 5771 -350 675 78 0 48 chr9 20349485 20349588 -97513039 - L1PB3 LINE L1 0 6154 6057 1098 210 56 9 chr9 20349969 20350183 -97512444 + MER58A DNA MER1_type 1 224 0 4135 30 4 0 chr9 20354692 20355152 -97507475 - L1PA4 LINE L1 -3 6152 5691 858 285 116 32 chr9 20356348 20356814 -97505813 - MLT1J LTR MaLR -6 505 1 2228 90 3 3 chr9 20357284 20357573 -97505054 - AluSg SINE Alu -21 289 1 1192 254 70 16 chr9 20357649 20358137 -97504490 - L1MEc LINE L1 -5200 1196 683 830 319 57 53 chr9 20358172 20358526 -97504101 - L1MEc LINE L1 -5789 607 249 2775 140 35 28 chr9 20358526 20358990 -97503637 + MLT1C LTR MaLR 1 467 0 830 319 57 53 chr9 20358990 20359200 -97503427 - L1MEc LINE L1 -6147 249 41 467 265 145 51 chr9 20359205 20359578 -97503049 - L1MDa LINE L1 -4621 1459 1052 1362 279 115 54 chr9 20359581 20360529 -97502098 - L1MDa LINE L1 -5055 1015 10 309 381 6 6 chr9 20360948 20361124 -97501503 + L2 LINE L2 1986 2161 -1153 516 127 223 48 chr9 20361811 20361977 -97500650 - LTR50 LTR ERVL -45 750 556 14583 168 48 5 chr9 20361986 20365949 -97496678 - L1PB1 LINE L1 -1 6866 2379 276 30 0 0 chr9 20365949 20365982 -97496645 + (TG)n Simple_repeat Simple_repeat 1 33 0 14583 168 48 5 chr9 20365982 20368469 -97494158 - L1PB1 LINE L1 -4488 2379 1 512 213 186 11 chr9 20368487 20368675 -97493952 - LTR50 LTR ERVL -317 478 258 14862 125 45 7 chr9 20369117 20371425 -97491202 - Tigger1 DNA MER2_type -23 2395 1 2073 137 13 7 chr9 20372359 20372658 -97489969 + AluJo SINE Alu 1 301 -11 492 262 28 108 chr9 20372770 20373081 -97489546 - MLT1H LTR MaLR 0 549 152 4814 182 45 12 chr9 20373081 20374741 -97487886 - L1MB3 LINE L1 -12 6171 4446 575 107 12 0 chr9 20374750 20374834 -97487793 - MSTC LTR MaLR -2 394 310 603 172 131 16 chr9 20374926 20375048 -97487579 - MSTC LTR MaLR -292 136 1 283 183 98 0 chr9 20375049 20375131 -97487496 - L1MB3 LINE L1 -1708 4438 4349 225 317 70 21 chr9 20375131 20375273 -97487354 - MLT1H LTR MaLR -372 177 29 259 241 115 23 chr9 20375510 20375597 -97487030 + MIR3 SINE MIR 81 175 -33 909 133 0 8 chr9 20375652 20375780 -97486847 + AluSx SINE Alu 1 127 -186 573 192 0 0 chr9 20375782 20375902 -97486725 + (TA)n Simple_repeat Simple_repeat 1 120 0 288 250 0 0 chr9 20375907 20375959 -97486668 + AluSx SINE Alu 123 174 -126 525 152 20 20 chr9 20375959 20376058 -97486569 + AluJo/FRAM SINE Alu 209 307 -5 1702 193 16 25 chr9 20376112 20376480 -97486147 - MLT1A1 LTR MaLR 0 365 1 230 300 150 7 chr9 20378905 20379045 -97483582 - MIR SINE MIR -12 250 91 563 231 173 54 chr9 20381506 20381896 -97480731 - MLT1D LTR MaLR -29 438 3 299 320 204 0 chr9 20383127 20383274 -97479353 - MER5A DNA MER1_type 0 189 13 184 326 102 27 chr9 20383688 20383835 -97478792 - L2 LINE L2 -448 2866 2709 727 207 41 28 chr9 20383849 20383994 -97478633 + AluJb SINE Alu 135 281 -31 442 312 144 50 chr9 20384077 20384811 -97477816 - L2 LINE L2 -700 2614 1812 299 350 45 16 chr9 20384869 20385115 -97477512 + L1M4 LINE L1 -254 4294967294 -6282 594 233 264 24 chr9 20385254 20385584 -97477043 + L1M4 LINE L1 540 948 -5436 2045 200 108 0 chr9 20385587 20386077 -97476550 + L1M4 LINE L1 1054 1596 -4788 4106 228 57 52 chr9 20386080 20387543 -97475084 + L1M2 LINE L1 2 1860 -4978 2130 109 0 43 chr9 20387543 20387846 -97474781 + AluSg SINE Alu 1 290 -20 4106 228 57 52 chr9 20387846 20388235 -97474392 + L1M2 LINE L1 1860 2245 -4593 9265 153 56 6 chr9 20388235 20390577 -97472050 + L1PA11 LINE L1 3759 6174 0 827 180 132 6 chr9 20390627 20390794 -97471833 + MSTB LTR MaLR 185 372 -54 2810 235 148 21 chr9 20390808 20392569 -97470058 + L1M4 LINE L1 1583 3574 -2808 1929 132 68 7 chr9 20392570 20392865 -97469762 + AluSq SINE Alu 1 313 0 370 281 40 53 chr9 20392935 20393163 -97469464 + L1ME3A LINE L1 5832 6056 -114 756 168 16 0 chr9 20393173 20393298 -97469329 - MER45A DNA AcHobo 0 178 52 1077 163 101 53 chr9 20393336 20393563 -97469064 + MER8 DNA MER2_type 1 238 -1 1035 179 6 0 chr9 20393612 20393780 -97468847 - FAM SINE Alu -6 169 1 2032 149 10 0 chr9 20393834 20394130 -97468497 + AluSx SINE Alu 1 299 -13 986 124 0 0 chr9 20394166 20394311 -97468316 + AluJb SINE Alu 168 312 0 268 340 0 38 chr9 20396111 20396217 -97466410 - MIR SINE MIR -62 146 45 366 217 264 8 chr9 20401076 20401205 -97461422 - MIR SINE MIR -68 194 33 688 144 0 0 chr9 20402037 20402141 -97460486 + AluSg/x SINE Alu 193 296 -16 1313 167 132 21 chr9 20402371 20402652 -97459975 + AluJo SINE Alu 1 312 0 450 185 0 25 chr9 20404313 20404393 -97458234 + Tigger5 DNA MER2_type 1 78 -2245 313 304 0 0 chr9 20404393 20404472 -97458155 - Tigger5 DNA MER2_type -3 2320 2242 292 269 51 0 chr9 20404462 20404540 -97458087 + Tigger5 DNA MER2_type 2242 2323 0 * 240 309 73 18 chr9 20404916 20405026 -97457601 - L2 LINE L2 -40 3232 3117 1081 172 98 130 chr9 20405523 20405900 -97456727 + MLT1A1 LTR MaLR 1 365 0 26 30 0 0 chr9 20406849 20406882 -97455745 + AT_rich Low_complexity Low_complexity 1 33 0 604 258 87 110 chr9 20407466 20408345 -97454282 + L2 LINE L2 2387 3313 0 516 95 0 0 chr9 20408385 20408469 -97454158 + (GGGA)n Simple_repeat Simple_repeat 1 84 0 369 43 0 0 chr9 20409261 20409308 -97453319 + (CA)n Simple_repeat Simple_repeat 1 47 0 248 240 130 10 chr9 20409532 20409632 -97452995 + MIR SINE MIR 81 192 -70 838 290 37 65 chr9 20410024 20410348 -97452279 + MLT1K LTR MaLR 11 325 -263 492 218 49 56 chr9 20410375 20410517 -97452110 + MLT1K LTR MaLR 395 535 -53 693 191 7 7 chr9 20410548 20410684 -97451943 + MER103 DNA DNA 31 166 0 1965 87 4 15 chr9 20412440 20412705 -97449922 + AluY SINE Alu 43 304 -7 23 54 0 0 chr9 20414644 20414681 -97447946 + AT_rich Low_complexity Low_complexity 1 37 0 368 256 163 37 chr9 20414782 20414997 -97447630 - MIR SINE MIR -11 251 10 2259 69 0 0 chr9 20415150 20415424 -97447203 - AluY SINE Alu -1 310 37 455 281 25 59 chr9 20415701 20415939 -97446688 + HAL1 LINE L1 2278 2507 0 314 286 12 0 chr9 20416092 20416176 -97446451 + MIR SINE MIR 37 121 -87 641 298 66 0 chr9 20419286 20419514 -97443113 - MIR SINE MIR -12 250 8 585 279 48 22 chr9 20419522 20419751 -97442876 - MIR SINE MIR -8 254 20 2501 67 3 0 chr9 20420148 20420446 -97442181 - AluSp SINE Alu -14 299 1 4964 219 58 40 chr9 20420664 20423009 -97439618 - L1MB7 LINE L1 -9 6175 3800 2550 248 88 46 chr9 20423065 20423412 -97439215 - L1M4c LINE L1 -4461 2183 1852 2427 56 0 3 chr9 20423412 20423721 -97438906 + AluY SINE Alu 1 308 0 2550 248 88 46 chr9 20423721 20424562 -97438065 - L1M4c LINE L1 -4792 1852 888 1485 127 100 63 chr9 20424562 20424861 -97437766 - AluSq SINE Alu -3 310 1 2550 248 88 46 chr9 20424861 20425042 -97437585 - L1M4c LINE L1 -5756 888 716 271 268 25 109 chr9 20425160 20425399 -97437228 - L1M4c LINE L1 -5827 715 497 439 290 27 27 chr9 20425565 20425786 -97436841 - L1M4c LINE L1 -6300 242 22 1515 216 30 49 chr9 20427172 20427542 -97435085 + MLT1A1 LTR MaLR 1 363 -2 2166 142 58 31 chr9 20427889 20428306 -97434321 - MSTA LTR MaLR 0 428 1 432 97 0 0 chr9 20428453 20428515 -97434112 + (TG)n Simple_repeat Simple_repeat 2 63 0 275 279 168 60 chr9 20429025 20429323 -97433304 - L2 LINE L2 -77 3195 2866 712 217 152 23 chr9 20430531 20430748 -97431879 + L1ME3A LINE L1 5914 6158 -12 1250 229 45 30 chr9 20430856 20431192 -97431435 - MER58B DNA MER1_type 0 341 1 1859 251 90 66 chr9 20435399 20435642 -97426985 + L1ME LINE L1 67 303 -5767 2350 103 3 0 chr9 20435642 20435953 -97426674 + AluSp SINE Alu 1 312 -1 1859 251 90 66 chr9 20435953 20436645 -97425982 + L1ME LINE L1 303 1024 -5046 21 0 0 0 chr9 20436874 20436895 -97425732 + AT_rich Low_complexity Low_complexity 1 21 0 1176 196 5 0 chr9 20438910 20439114 -97423513 + AluJo SINE Alu 88 292 -20 194 306 0 42 chr9 20441161 20441233 -97421394 + L2 LINE L2 2995 3063 -250 1939 166 0 0 chr9 20443989 20444284 -97418343 - AluJb SINE Alu -17 295 1 190 337 0 50 chr9 20444284 20444385 -97418242 - MIR3 SINE MIR -6 202 107 1263 121 61 103 chr9 20444613 20444698 -97417929 - MER33 DNA MER1_type -2269 316 229 901 183 55 0 chr9 20444698 20444862 -97417765 + FAM SINE Alu 1 173 -2 1263 121 61 103 chr9 20444862 20445106 -97417521 - MER33 DNA MER1_type -2356 229 1 1852 149 3 36 chr9 20445587 20445896 -97416731 - AluJo SINE Alu -12 300 2 473 301 57 0 chr9 20446194 20446370 -97416257 + MIR SINE MIR 10 195 -67 565 297 59 14 chr9 20446426 20446648 -97415979 - MIR SINE MIR -13 249 18 274 264 164 0 chr9 20446961 20447071 -97415556 - MIR3 SINE MIR -13 195 68 2002 147 0 0 chr9 20447789 20448081 -97414546 + AluSx SINE Alu 1 292 -20 241 326 22 0 chr9 20448232 20448321 -97414306 + MER117 DNA MER1_type 41 131 -66 2065 135 0 0 chr9 20449147 20449436 -97413191 + AluSq SINE Alu 12 300 -13 1712 163 7 18 chr9 20450160 20450442 -97412185 + AluJb SINE Alu 18 296 -16 766 227 21 41 chr9 20450455 20450697 -97411930 + L1ME2 LINE L1 5893 6129 -35 980 164 0 34 chr9 20450810 20450987 -97411640 - AluJb SINE Alu -10 302 132 6599 50 91 5 chr9 20450988 20451705 -97410922 - L1PA7 LINE L1 -2 6152 5392 2274 126 0 0 chr9 20451705 20452015 -97410612 - AluSp SINE Alu -3 310 1 6599 50 91 5 chr9 20452015 20452268 -97410359 - L1PA7 LINE L1 -762 5392 5162 30604 123 21 66 chr9 20452268 20457860 -97404767 - L1P LINE L1 -802 5344 3 873 159 0 0 chr9 20457860 20457992 -97404635 - AluJb SINE Alu -180 132 1 2271 120 0 0 chr9 20458240 20458541 -97404086 - AluSq SINE Alu -12 301 1 191 270 108 0 chr9 20459289 20459363 -97403264 + L2 LINE L2 3186 3267 -5 241 224 118 0 chr9 20462107 20462183 -97400444 - MIR SINE MIR -3 259 175 1026 236 138 15 chr9 20463807 20464214 -97398413 + L1MC4 LINE L1 6467 6923 -1119 380 326 27 74 chr9 20464472 20464730 -97397897 - MIR SINE MIR -12 250 5 1855 155 3 10 chr9 20464851 20465155 -97397472 + AluSx SINE Alu 2 303 -9 374 280 93 20 chr9 20465797 20465947 -97396680 - MIR SINE MIR -12 250 90 837 179 0 0 chr9 20466837 20466971 -97395656 + FRAM SINE Alu 6 139 -37 1402 131 0 0 chr9 20467738 20467937 -97394690 + AluSg/x SINE Alu 104 302 -10 2333 92 0 3 chr9 20467947 20468242 -97394385 + AluSc SINE Alu 7 300 -9 235 100 40 0 chr9 20468243 20468293 -97394334 + L1MB3 LINE L1 6132 6183 0 1313 210 30 88 chr9 20468525 20468849 -97393778 + MER58B DNA MER1_type 1 303 -2117 1891 138 13 33 chr9 20468849 20469153 -97393474 - AluJb SINE Alu -14 298 1 1313 210 30 88 chr9 20469153 20469190 -97393437 + MER58B DNA MER1_type 303 341 0 259 268 0 28 chr9 20469444 20469515 -97393112 + MLT1J LTR MaLR 1 69 -442 27 0 0 0 chr9 20469925 20469952 -97392675 + AT_rich Low_complexity Low_complexity 1 27 0 246 256 93 2 chr9 20470512 20470625 -97392002 - MIR SINE MIR -71 137 17 207 284 138 17 chr9 20471696 20471812 -97390815 - L2 LINE L2 -195 3077 2948 1787 133 83 42 chr9 20471845 20472205 -97390422 - THE1C LTR MaLR 0 375 1 * 3555 119 24 53 chr9 20472205 20472824 -97389803 - Tigger1 DNA MER2_type -498 1920 1320 225 0 0 0 chr9 20473027 20473052 -97389575 + (CA)n Simple_repeat Simple_repeat 1 25 0 266 312 35 28 chr9 20473437 20473578 -97389049 - MIR SINE MIR -55 207 66 658 226 15 15 chr9 20473893 20474026 -97388601 + AluJb SINE Alu 135 267 -45 2945 102 41 12 chr9 20474043 20474446 -97388181 + MER1A DNA MER1_type 1 391 -2311 1935 140 0 11 chr9 20474446 20474725 -97387902 + AluSx SINE Alu 1 276 -36 3638 70 0 6 chr9 20474725 20475196 -97387431 + L1PA6 LINE L1 5681 6148 -6 823 208 39 6 chr9 20475307 20475485 -97387142 - MLT1B LTR MaLR -206 184 1 842 103 0 0 chr9 20475685 20475792 -97386835 - AluSp/q SINE Alu -19 294 188 1572 138 5 0 chr9 20475792 20476010 -97386617 - AluSp SINE Alu -94 219 1 1804 65 0 0 chr9 20476017 20476246 -97386381 - L1PA8 LINE L1 -4 6168 5940 238 250 77 0 chr9 20477577 20477681 -97384946 + MIR3 SINE MIR 91 202 -6 2051 148 3 0 chr9 20478708 20479012 -97383615 + AluSq SINE Alu 1 305 -8 363 239 99 24 chr9 20479017 20479187 -97383440 - L1MC5 LINE L1 -44 7917 7726 1743 174 101 0 chr9 20479187 20479503 -97383124 - MER7A DNA MER2_type 0 346 1 363 239 99 24 chr9 20479503 20479545 -97383082 - L1MC5 LINE L1 -235 7726 7689 * 1484 195 46 20 chr9 20479510 20479859 -97382768 + L1 LINE L1 3890 4247 -1899 13091 150 23 24 chr9 20479887 20482167 -97380460 + L1P LINE L1 11 2288 -3858 1464 197 34 50 chr9 20482187 20483494 -97379133 + SVA Other Other 432 866 -520 27 0 0 0 chr9 20483604 20483631 -97378996 + AT_rich Low_complexity Low_complexity 1 27 0 22929 74 28 5 chr9 20483631 20484295 -97378332 + L1PA6 LINE L1 2273 2920 -3234 2344 82 10 0 chr9 20484295 20484588 -97378039 + AluY SINE Alu 1 296 -15 22929 74 28 5 chr9 20484588 20487791 -97374836 + L1PA6 LINE L1 2920 6153 -1 1921 204 48 20 chr9 20487817 20488313 -97374314 + L1 LINE L1 4256 4765 -1381 1960 156 0 7 chr9 20488986 20489288 -97373339 - AluJb SINE Alu -12 300 1 342 252 199 8 chr9 20490021 20490152 -97372475 - MIR SINE MIR -1 261 106 2491 75 0 0 chr9 20491009 20491302 -97371325 - AluSc SINE Alu -15 294 2 326 0 0 0 chr9 20492322 20492357 -97370270 - U2 snRNA snRNA -153 35 1 290 250 162 40 chr9 20492596 20492700 -97369927 - Charlie8 DNA MER1_type -2174 243 114 2446 98 0 0 chr9 20492700 20493006 -97369621 - AluSx SINE Alu -6 306 1 290 250 162 40 chr9 20493006 20493049 -97369578 - Charlie8 DNA MER1_type -2303 114 78 2132 108 7 3 chr9 20493340 20493637 -97368990 + AluSq SINE Alu 3 300 -13 36 0 0 0 chr9 20493638 20493674 -97368953 + AT_rich Low_complexity Low_complexity 1 36 0 1439 198 0 26 chr9 20494357 20494495 -97368132 - AluJo SINE Alu -44 268 139 2124 143 3 0 chr9 20494495 20494802 -97367825 - AluSx SINE Alu -4 308 1 1439 198 0 26 chr9 20494802 20494936 -97367691 - AluJo SINE Alu -173 139 3 459 283 56 17 chr9 20495004 20495184 -97367443 + MER5A DNA MER1_type 3 189 0 316 263 94 64 chr9 20495468 20495639 -97366988 + LTR67 LTR ERVL 382 557 0 1898 188 0 0 chr9 20495820 20496129 -97366498 + AluJb SINE Alu 1 309 -3 2379 99 3 0 chr9 20496763 20497067 -97365560 + AluSp SINE Alu 2 306 -7 936 303 150 22 chr9 20497264 20497380 -97365247 - L3 LINE CR1 -19 1558 1458 1829 147 10 10 chr9 20497380 20497687 -97364940 + AluSx SINE Alu 1 307 -5 936 303 150 22 chr9 20497687 20498284 -97364343 - L3 LINE CR1 -119 1458 754 1305 145 13 31 chr9 20498405 20498633 -97363994 - AluJb SINE Alu -82 230 7 808 228 19 102 chr9 20498638 20498963 -97363664 - L3 LINE CR1 -812 765 468 5057 82 1 59 chr9 20499654 20500384 -97362243 + LTR12 LTR ERV1 1 688 0 8652 82 25 29 chr9 20500689 20500786 -97361841 + THE1A-int LTR MaLR 397 493 -1087 2335 48 14 0 chr9 20500786 20501076 -97361551 + L1PA7 LINE L1 5861 6154 0 8652 82 25 29 chr9 20501076 20502166 -97360461 + THE1A-int LTR MaLR 493 1580 0 2377 102 17 14 chr9 20502168 20502520 -97360107 + THE1A LTR MaLR 3 355 0 202 275 220 0 chr9 20502661 20502752 -97359875 - MIR SINE MIR -111 151 41 6609 32 1 1 chr9 20502805 20503576 -97359051 + L1PA3 LINE L1 5382 6152 -3 258 139 0 0 chr9 20503585 20503628 -97358999 - MIR SINE MIR -187 75 33 23 0 0 0 chr9 20504274 20504297 -97358330 + AT_rich Low_complexity Low_complexity 1 23 0 1428 166 28 3 chr9 20504936 20505219 -97357408 + L1MA4 LINE L1 6000 6289 -11 269 247 99 0 chr9 20505370 20505451 -97357176 + MIR3 SINE MIR 111 199 -9 1946 111 7 4 chr9 20505705 20505984 -97356643 + AluSx SINE Alu 20 299 -13 391 182 104 0 chr9 20505997 20506074 -97356553 + L1MEc LINE L1 597 681 -5715 272 217 14 14 chr9 20506179 20506248 -97356379 - MER5B DNA MER1_type -108 70 2 247 297 230 0 chr9 20506371 20506519 -97356108 - MIR SINE MIR -7 255 74 811 213 46 0 chr9 20508144 20508318 -97354309 - MER5A DNA MER1_type -5 184 3 690 222 102 0 chr9 20508722 20508889 -97353738 + MER58 DNA MER1_type 2 185 -156 461 195 0 0 chr9 20508913 20508995 -97353632 + MER58 DNA MER1_type 2337 2418 -2 2137 108 72 12 chr9 20509559 20509894 -97352733 + THE1A LTR MaLR 1 355 0 2592 86 6 0 chr9 20509894 20510243 -97352384 + THE1A-int LTR MaLR 1 351 -1229 2926 73 8 5 chr9 20510343 20510724 -97351903 + THE1A-int LTR MaLR 1199 1580 0 2377 102 17 14 chr9 20510726 20511078 -97351549 + THE1A LTR MaLR 3 355 0 202 275 220 0 chr9 20511219 20511310 -97351317 - MIR SINE MIR -111 151 41 6743 29 1 0 chr9 20511363 20512136 -97350491 + L1PA3 LINE L1 5382 6155 0 23 0 0 0 chr9 20512195 20512218 -97350409 + AT_rich Low_complexity Low_complexity 1 23 0 471 99 0 0 chr9 20512452 20512523 -97350104 + Alu SINE Alu 234 304 -8 560 184 0 0 chr9 20512523 20512626 -97350001 + L1M4 LINE L1 3746 3848 -2298 2223 110 0 0 chr9 20513104 20513395 -97349232 - AluSq SINE Alu -22 291 1 1785 153 0 4 chr9 20513763 20514031 -97348596 + AluSx SINE Alu 37 303 -9 761 257 67 4 chr9 20514038 20514307 -97348320 + L1ME1 LINE L1 5872 6178 0 7305 128 9 16 chr9 20514330 20515947 -97346680 + L1MA2 LINE L1 4161 5789 -515 2181 128 3 0 chr9 20515947 20516253 -97346374 + AluSp SINE Alu 1 307 -6 1866 169 0 10 chr9 20516256 20516552 -97346075 + AluJb SINE Alu 1 293 -19 7305 128 9 16 chr9 20516552 20516851 -97345776 + L1MA2 LINE L1 5791 6091 -213 1927 159 0 3 chr9 20516851 20517146 -97345481 + AluJb SINE Alu 1 294 -18 7305 128 9 16 chr9 20517146 20517229 -97345398 + L1MA2 LINE L1 6091 6173 -131 2139 118 21 0 chr9 20517229 20517517 -97345110 + AluSx SINE Alu 1 294 -18 7305 128 9 16 chr9 20517517 20517670 -97344957 + L1MA2 LINE L1 6173 6304 0 2120 224 108 108 chr9 20517768 20517951 -97344676 + HAL1 LINE L1 12 194 -2313 2422 52 3 3 chr9 20517951 20518238 -97344389 + AluY SINE Alu 4 290 -21 2120 224 108 108 chr9 20518238 20518395 -97344232 + HAL1 LINE L1 194 350 -2157 3016 6 0 0 chr9 20518395 20518713 -97343914 + AluYb8 SINE Alu 1 318 0 2120 224 108 108 chr9 20518713 20519261 -97343366 + HAL1 LINE L1 350 904 -1603 1497 82 34 5 chr9 20519261 20519469 -97343158 + AluSp SINE Alu 90 303 -10 2120 224 108 108 chr9 20519469 20519748 -97342879 + HAL1 LINE L1 903 1181 -1326 914 144 11 58 chr9 20519756 20519779 -97342848 + AluJo SINE Alu 120 143 -169 2354 81 3 23 chr9 20519779 20520086 -97342541 + AluSp SINE Alu 1 301 -12 914 144 11 58 chr9 20520086 20520250 -97342377 + AluJo SINE Alu 143 298 -14 1154 137 0 16 chr9 20520256 20520270 -97342357 + AluSg/x SINE Alu 118 131 -178 2135 136 0 0 chr9 20520270 20520579 -97342048 + AluSx SINE Alu 1 309 -3 1154 137 0 16 chr9 20520579 20520747 -97341880 + AluSg/x SINE Alu 131 297 -12 1232 239 172 29 chr9 20520750 20521297 -97341330 + HAL1 LINE L1 1195 1819 -688 237 150 350 0 chr9 20521307 20521367 -97341260 + HAL1 LINE L1 1886 1966 -541 2135 101 31 0 chr9 20521548 20521835 -97340792 + AluSx SINE Alu 1 296 -16 429 298 95 0 chr9 20521969 20522137 -97340490 + MIR SINE MIR 1 184 -78 619 261 48 34 chr9 20524545 20524678 -97337949 + MIR SINE MIR 26 165 -97 1764 167 13 30 chr9 20524678 20524983 -97337644 + AluJo SINE Alu 1 300 -12 619 261 48 34 chr9 20524983 20525056 -97337571 + MIR SINE MIR 165 235 -27 366 199 320 17 chr9 20525131 20525312 -97337315 - MIR SINE MIR -18 244 9 1702 148 33 13 chr9 20525353 20525656 -97336971 - AluSx SINE Alu -2 310 2 2089 108 20 7 chr9 20525966 20526271 -97336356 - AluSx SINE Alu -2 310 2 200 329 0 13 chr9 20527818 20527897 -97334730 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 21 0 0 0 chr9 20527926 20527947 -97334680 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 20528768 20528796 -97333831 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr9 20529518 20529553 -97333074 + AT_rich Low_complexity Low_complexity 1 35 0 1981 158 0 0 chr9 20530575 20530878 -97331749 - AluJo SINE Alu -9 303 1 358 174 31 61 chr9 20530985 20531083 -97331544 - L1MC5 LINE L1 -36 7925 7831 2057 161 83 40 chr9 20531089 20531537 -97331090 + MLT1C LTR MaLR 1 467 0 1007 197 43 14 chr9 20533282 20533490 -97329137 - MER58A DNA MER1_type -6 218 5 2326 88 3 10 chr9 20534857 20535163 -97327464 + AluSp SINE Alu 1 304 -9 1743 201 0 0 chr9 20535530 20535828 -97326799 + AluJo SINE Alu 1 298 -14 1586 174 10 23 chr9 20536635 20536939 -97325688 - AluJb SINE Alu -8 304 5 23 0 0 0 chr9 20537428 20537451 -97325176 + AT_rich Low_complexity Low_complexity 1 23 0 2328 98 3 3 chr9 20537939 20538245 -97324382 - AluSp SINE Alu -7 306 1 1667 122 0 17 chr9 20538733 20538970 -97323657 - AluSx SINE Alu -79 233 1 603 142 150 0 chr9 20538971 20539098 -97323529 + L1MB4 LINE L1 6005 6150 -30 2255 118 7 0 chr9 20539112 20539418 -97323209 - AluSx SINE Alu -4 308 1 2057 113 35 0 chr9 20539704 20539988 -97322639 - AluSx SINE Alu -16 296 3 880 115 8 0 chr9 20540821 20540943 -97321684 + AluSq/x SINE Alu 1 123 -189 1718 182 3 0 chr9 20541507 20541798 -97320829 + AluJo SINE Alu 10 301 -11 2401 37 44 10 chr9 20541798 20542091 -97320536 + AluY SINE Alu 1 304 -7 2374 110 0 0 chr9 20542267 20542576 -97320051 + AluSq SINE Alu 3 311 -2 1932 127 25 0 chr9 20542795 20543070 -97319557 + AluSx SINE Alu 10 291 -21 1441 107 5 0 chr9 20543071 20543267 -97319360 + AluSp SINE Alu 29 225 -88 752 157 0 0 chr9 20543370 20543485 -97319142 - AluJb SINE Alu -195 117 3 2128 83 0 66 chr9 20543518 20543819 -97318808 - AluSx SINE Alu -11 301 21 724 206 187 0 chr9 20543819 20544033 -97318594 - MIR SINE MIR -6 256 3 2344 76 0 0 chr9 20544718 20545008 -97317619 + AluSx SINE Alu 5 294 -18 243 0 0 0 chr9 20545012 20545039 -97317588 + (TA)n Simple_repeat Simple_repeat 1 27 0 2125 116 3 22 chr9 20545072 20545390 -97317237 + AluSx SINE Alu 1 312 0 2230 128 0 0 chr9 20546543 20546855 -97315772 + AluSx SINE Alu 1 312 0 204 114 0 68 chr9 20546932 20546976 -97315651 - MIR SINE MIR -101 161 121 21 0 0 0 chr9 20547016 20547037 -97315590 + AT_rich Low_complexity Low_complexity 1 21 0 229 195 363 0 chr9 20547358 20547471 -97315156 + MER5A DNA MER1_type 15 168 -21 662 172 52 0 chr9 20547588 20547704 -97314923 + FLAM_C SINE Alu 11 132 -11 318 83 50 17 chr9 20548525 20548614 -97314013 + Alu SINE Alu 240 330 0 301 202 67 42 chr9 20548636 20548755 -97313872 + L1MC4a LINE L1 6056 6177 -1631 2292 115 0 6 chr9 20548756 20549070 -97313557 + AluSx SINE Alu 1 312 0 1072 254 71 24 chr9 20549570 20549948 -97312679 + LTR16B LTR ERVL 1 396 -68 1048 126 0 7 chr9 20550177 20550320 -97312307 + AluSq/x SINE Alu 1 142 -170 2204 105 6 6 chr9 20550555 20550868 -97311759 - AluSq SINE Alu 0 313 1 2204 123 3 0 chr9 20550878 20551188 -97311439 - AluY SINE Alu 0 311 1 1269 123 0 0 chr9 20551549 20551720 -97310907 - AluSg/x SINE Alu -12 300 130 2099 122 23 0 chr9 20551733 20552036 -97310591 - AluSx SINE Alu -2 310 1 2102 122 27 0 chr9 20552038 20552333 -97310294 - AluSx SINE Alu -9 303 1 2117 121 3 10 chr9 20552687 20552993 -97309634 + AluSx SINE Alu 1 304 -8 297 0 0 0 chr9 20552993 20553026 -97309601 + (CA)n Simple_repeat Simple_repeat 2 34 0 872 127 0 15 chr9 20553343 20553477 -97309150 - FLAM_C SINE Alu -1 132 1 1883 116 4 0 chr9 20553806 20554064 -97308563 - AluSq SINE Alu -19 294 36 2383 96 3 0 chr9 20554218 20554519 -97308108 - AluSx SINE Alu -10 302 1 247 333 113 7 chr9 20554527 20554668 -97307959 - MIR SINE MIR -48 214 59 2061 149 0 0 chr9 20554668 20554970 -97307657 - AluJb SINE Alu -10 302 1 1950 130 3 20 chr9 20555114 20555279 -97307348 - AluSx SINE Alu -16 296 137 2373 103 0 3 chr9 20555279 20555590 -97307037 - AluSg SINE Alu 0 310 1 1950 130 3 20 chr9 20555590 20555724 -97306903 - AluSx SINE Alu -175 137 2 1603 182 0 4 chr9 20555793 20556057 -97306570 + AluJb SINE Alu 35 297 -15 1332 173 5 5 chr9 20556163 20556383 -97306244 - AluSx SINE Alu -92 220 1 851 196 20 67 chr9 20556386 20556562 -97306065 + L2 LINE L2 2418 2580 -734 2149 122 20 0 chr9 20556562 20556856 -97305771 - AluSx SINE Alu -12 300 1 851 196 20 67 chr9 20556856 20556934 -97305693 + L2 LINE L2 2580 2660 -654 2325 100 112 45 chr9 20556982 20557142 -97305485 + MSTA LTR MaLR 1 149 -279 2360 92 0 19 chr9 20557142 20557457 -97305170 - AluSg1 SINE Alu 0 309 1 2325 100 112 45 chr9 20557457 20557697 -97304930 + MSTA LTR MaLR 149 428 0 24 0 0 0 chr9 20557701 20557725 -97304902 + AT_rich Low_complexity Low_complexity 1 24 0 2396 108 45 66 chr9 20557725 20558091 -97304536 - L1PA16 LINE L1 -9 6157 5800 2394 92 3 3 chr9 20558091 20558394 -97304233 - AluSg SINE Alu -7 303 1 2396 108 45 66 chr9 20558394 20558451 -97304176 - L1PA16 LINE L1 -366 5800 5743 1322 200 28 2 chr9 20558451 20558732 -97303895 - L1P LINE L1 -1889 4257 3975 421 296 108 23 chr9 20558750 20558926 -97303701 + L2 LINE L2 2726 2916 -398 478 88 0 38 chr9 20558948 20559028 -97303599 - Alu SINE Alu -1 311 235 1840 97 4 0 chr9 20559128 20559375 -97303252 + AluSp SINE Alu 66 313 0 267 242 211 0 chr9 20559404 20559499 -97303128 + MIR SINE MIR 148 262 0 252 0 0 0 chr9 20559507 20559535 -97303092 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 209 343 15 0 chr9 20560044 20560111 -97302516 - MIR SINE MIR -166 96 29 331 232 9 80 chr9 20560132 20560244 -97302383 + MIR3 SINE MIR 83 186 -22 2198 129 0 0 chr9 20560406 20560716 -97301911 - AluSg SINE Alu 0 310 1 2299 103 13 0 chr9 20560716 20561017 -97301610 - AluSx SINE Alu -6 306 1 358 160 0 37 chr9 20561759 20561839 -97300788 - Alu SINE Alu 0 302 240 272 176 20 0 chr9 20562033 20562084 -97300543 - MER57A LTR ERV1 -68 335 284 189 322 22 11 chr9 20562128 20562218 -97300409 + MIR SINE MIR 145 235 -27 2225 100 0 16 chr9 20562219 20562529 -97300098 - AluSc SINE Alu -4 305 1 287 339 8 31 chr9 20562672 20562802 -97299825 - MER5A DNA MER1_type 0 189 63 709 159 0 9 chr9 20562828 20562941 -97299686 - FLAM_C SINE Alu -21 122 11 2291 104 0 0 chr9 20563282 20563580 -97299047 + AluSg SINE Alu 4 301 -9 2297 84 0 3 chr9 20563585 20563901 -97298726 + AluSg SINE Alu 1 315 0 2351 93 0 7 chr9 20564414 20564714 -97297913 + AluSg SINE Alu 1 298 -12 231 36 0 0 chr9 20564796 20564824 -97297803 + (TC)n Simple_repeat Simple_repeat 1 28 0 1576 159 45 28 chr9 20565629 20565918 -97296709 + AluJb SINE Alu 13 306 -6 1848 153 3 17 chr9 20566014 20566151 -97296476 + AluSx SINE Alu 1 138 -174 1981 124 38 0 chr9 20566151 20566441 -97296186 + AluSx SINE Alu 1 301 -11 1848 153 3 17 chr9 20566441 20566591 -97296036 + AluSx SINE Alu 138 284 -28 576 174 0 0 chr9 20566596 20566688 -97295939 + AluJo SINE Alu 127 218 -94 479 231 52 23 chr9 20566825 20566983 -97295644 + L1MC/D LINE L1 5392 5553 -568 810 213 0 29 chr9 20566985 20567159 -97295468 + AluJb SINE Alu 2 170 -142 2241 80 3 3 chr9 20567166 20567452 -97295175 + AluSp SINE Alu 24 309 -4 2030 132 30 3 chr9 20567452 20567747 -97294880 + AluSq SINE Alu 1 304 -9 2164 148 0 0 chr9 20568396 20568707 -97293920 + AluSx SINE Alu 1 311 -1 1807 161 39 0 chr9 20569319 20569604 -97293023 + AluSx SINE Alu 1 296 -16 24 0 0 0 chr9 20569671 20569695 -97292932 + AT_rich Low_complexity Low_complexity 1 24 0 239 292 192 0 chr9 20570191 20570321 -97292306 + L1ME4a LINE L1 5967 6121 0 2237 118 0 0 chr9 20571093 20571399 -97291228 + AluSx SINE Alu 2 307 -5 3185 24 1 0 chr9 20571927 20572436 -97290191 + L1P2 LINE L1 5009 5518 -637 1800 156 3 42 chr9 20572763 20573070 -97289557 + AluJo SINE Alu 1 295 -17 2195 115 0 16 chr9 20573741 20574045 -97288582 - AluSp SINE Alu -14 299 1 2038 127 0 33 chr9 20575458 20575765 -97286862 + AluSq SINE Alu 1 297 -16 29 28 0 0 chr9 20575821 20575857 -97286770 + AT_rich Low_complexity Low_complexity 1 36 0 481 227 0 0 chr9 20575866 20575963 -97286664 + AluJ/FLAM SINE Alu 2 98 -214 779 153 23 23 chr9 20575979 20576110 -97286517 - FLAM_C SINE Alu 0 133 3 555 100 11 22 chr9 20576110 20576200 -97286427 - LTR12 LTR ERV1 -625 89 1 709 229 71 92 chr9 20577223 20577619 -97285008 + L1MEd LINE L1 918 1321 -4808 1928 140 27 7 chr9 20577619 20577919 -97284708 - AluJb SINE Alu -6 306 1 709 229 71 92 chr9 20577919 20577971 -97284656 + L1MEd LINE L1 1321 1373 -4756 2000 134 48 0 chr9 20577971 20578263 -97284364 + AluSq SINE Alu 1 306 -7 709 229 71 92 chr9 20578263 20578280 -97284347 + L1MEd LINE L1 1373 1389 -4740 2077 137 14 0 chr9 20578280 20578573 -97284054 + AluSx SINE Alu 1 297 -15 709 229 71 92 chr9 20578573 20578757 -97283870 + L1MEd LINE L1 1389 1553 -4576 21 57 0 0 chr9 20579030 20579065 -97283562 + AT_rich Low_complexity Low_complexity 1 35 0 430 219 0 0 chr9 20579829 20579902 -97282725 - AluJ/FLAM SINE Alu -229 73 1 2423 156 36 24 chr9 20580248 20580748 -97281879 + L1MB8 LINE L1 5672 6177 -1 410 192 41 0 chr9 20580800 20580873 -97281754 + AluJ/FLAM SINE Alu 9 84 -228 1335 149 32 108 chr9 20580888 20581002 -97281625 + L1MB5 LINE L1 5858 5979 -195 2215 107 7 23 chr9 20581002 20581310 -97281317 + AluSx SINE Alu 1 303 -9 1335 149 32 108 chr9 20581310 20581408 -97281219 + L1MB5 LINE L1 5979 6037 -137 1804 142 47 27 chr9 20581408 20581704 -97280923 + AluJb SINE Alu 1 302 -10 1335 149 32 108 chr9 20581704 20581833 -97280794 + L1MB5 LINE L1 6037 6174 0 856 124 0 29 chr9 20582361 20582498 -97280129 + FLAM_C SINE Alu 1 133 0 2198 109 10 0 chr9 20582618 20582911 -97279716 + AluY SINE Alu 1 296 -15 818 137 0 15 chr9 20583279 20583410 -97279217 + AluJb SINE Alu 175 303 -9 370 248 144 7 chr9 20583444 20583597 -97279030 - L1MC/D LINE L1 -2253 5555 5382 267 254 0 14 chr9 20583660 20583731 -97278896 - L2 LINE L2 -211 3061 2992 1583 179 13 23 chr9 20583810 20584111 -97278516 + AluJo SINE Alu 1 298 -14 693 175 0 0 chr9 20584132 20584235 -97278392 + FRAM SINE Alu 44 146 -30 192 97 0 0 chr9 20584237 20584268 -97278359 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 194 88 0 29 chr9 20584507 20584541 -97278086 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 702 168 9 26 chr9 20584545 20584776 -97277851 + CT-rich Low_complexity Low_complexity 1 227 0 1145 168 106 0 chr9 20584776 20584984 -97277643 - AluJb SINE Alu 0 312 83 2171 99 10 3 chr9 20585126 20585419 -97277208 - AluSq SINE Alu -18 295 1 2317 97 0 28 chr9 20585458 20585777 -97276850 - AluSg SINE Alu 0 310 1 431 239 115 0 chr9 20585803 20585916 -97276711 - MIR3 SINE MIR -5 203 78 243 274 216 0 chr9 20586526 20586628 -97275999 - L2 LINE L2 0 3313 3190 2403 107 0 0 chr9 20586674 20586982 -97275645 + AluSx SINE Alu 1 308 -4 707 240 6 0 chr9 20586982 20587161 -97275466 - L2 LINE L2 -717 2597 2418 1856 145 9 35 chr9 20587164 20587481 -97275146 + AluJb SINE Alu 1 309 -3 2247 112 10 0 chr9 20587584 20587880 -97274747 - AluSq SINE Alu -14 299 1 1994 113 41 17 chr9 20587974 20588265 -97274362 - AluSx SINE Alu -14 298 1 2310 100 0 10 chr9 20588270 20588581 -97274046 - AluSx SINE Alu -4 308 1 354 200 105 19 chr9 20588645 20588750 -97273877 - L1MC4a LINE L1 -1973 5835 5722 888 114 8 0 chr9 20588829 20588961 -97273666 - AluJb SINE Alu -2 310 178 1066 172 11 21 chr9 20589195 20589359 -97273268 - AluSg/x SINE Alu -14 296 133 2004 140 0 17 chr9 20589359 20589659 -97272968 - AluSq SINE Alu -18 295 1 1066 172 11 21 chr9 20589659 20589680 -97272947 - AluSg/x SINE Alu -177 133 113 2053 131 0 23 chr9 20589741 20590047 -97272580 - AluSx SINE Alu -13 299 1 366 145 0 0 chr9 20590197 20590259 -97272368 + MER41A LTR ERV1 130 191 -363 617 143 20 0 chr9 20590261 20590359 -97272268 + AluJ/FLAM SINE Alu 2 101 -211 206 0 69 0 chr9 20590359 20590388 -97272239 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 504 222 0 0 chr9 20590613 20590703 -97271924 - FRAM/FAM SINE Alu -87 89 1 1843 157 13 3 chr9 20591230 20591530 -97271097 + AluJb SINE Alu 1 303 -9 2102 109 35 3 chr9 20591864 20592149 -97270478 + AluSx SINE Alu 1 294 -18 1676 132 21 98 chr9 20592383 20592571 -97270056 - AluSx SINE Alu -12 300 146 2114 97 3 32 chr9 20592571 20592882 -97269745 - AluSg SINE Alu -8 302 1 1676 132 21 98 chr9 20592882 20593018 -97269609 - AluSx SINE Alu -166 146 1 2002 139 3 0 chr9 20593213 20593507 -97269120 - AluSx SINE Alu -17 295 1 2531 69 0 0 chr9 20594104 20594410 -97268217 - AluY SINE Alu -5 306 1 243 289 103 26 chr9 20595567 20595723 -97266904 - MIR SINE MIR -77 185 18 231 178 44 0 chr9 20595906 20595951 -97266676 + CT-rich Low_complexity Low_complexity 2 48 0 2043 158 7 0 chr9 20595952 20596262 -97266365 - AluJb SINE Alu 0 312 1 2341 90 0 7 chr9 20596420 20596720 -97265907 - AluSc SINE Alu -11 298 1 344 163 0 0 chr9 20596762 20596811 -97265816 + MER66A LTR ERV1 287 335 -143 1827 110 98 0 chr9 20597532 20597796 -97264831 - AluSx SINE Alu -22 290 1 199 276 133 10 chr9 20598254 20598352 -97264275 + MIR SINE MIR 25 134 -74 678 111 10 0 chr9 20598433 20598556 -97264071 + AluJb SINE Alu 213 336 0 2044 145 7 3 chr9 20598662 20598972 -97263655 + AluSq SINE Alu 1 311 -2 1229 129 0 0 chr9 20598972 20599150 -97263477 + AluSg/x SINE Alu 132 309 -1 1022 115 107 123 chr9 20599287 20599540 -97263087 + MER7A DNA MER2_type 2 248 -98 322 132 55 99 chr9 20599545 20599636 -97262991 + Tigger3(Golem) DNA MER2_type 2844 2930 -99 247 200 0 0 chr9 20599664 20599709 -97262918 + MER1B DNA MER1_type 6 50 -287 903 134 119 64 chr9 20599719 20599921 -97262706 + MER1B DNA MER1_type 127 339 0 445 216 11 0 chr9 20599921 20599985 -97262642 + Tigger3(Golem) DNA MER2_type 2915 2979 -50 2423 75 3 3 chr9 20600446 20600740 -97261887 + AluSc SINE Alu 1 294 -15 2707 173 30 15 chr9 20601306 20601832 -97260795 + L1MB8 LINE L1 5509 6042 -136 742 128 23 8 chr9 20601845 20601978 -97260649 - L1MB4 LINE L1 0 6180 6046 1646 131 4 0 chr9 20601978 20602207 -97260420 + AluSx SINE Alu 1 230 -82 497 173 0 0 chr9 20602208 20602289 -97260338 - AluJ/FLAM SINE Alu -227 85 5 2200 112 20 0 chr9 20602356 20602660 -97259967 + AluSg SINE Alu 1 310 0 4685 123 18 20 chr9 20602983 20603770 -97258857 + L1MA4 LINE L1 5509 6293 -7 1522 132 113 8 chr9 20603772 20604037 -97258590 + AluJo SINE Alu 1 293 -19 679 161 0 46 chr9 20604040 20604170 -97258457 + FLAM_C SINE Alu 13 136 -7 2275 90 0 0 chr9 20604174 20604464 -97258163 + AluSc SINE Alu 1 290 -19 31 0 0 0 chr9 20604633 20604664 -97257963 + AT_rich Low_complexity Low_complexity 1 31 0 195 219 0 0 chr9 20604931 20604972 -97257655 + MIR SINE MIR 217 257 -5 216 266 117 55 chr9 20605804 20605914 -97256713 + L2 LINE L2 270 391 -2923 2483 62 3 10 chr9 20605914 20606223 -97256404 - AluSq SINE Alu -6 307 1 216 266 117 55 chr9 20606223 20606240 -97256387 + L2 LINE L2 390 405 -2909 2711 45 0 0 chr9 20606240 20606549 -97256078 - AluY SINE Alu -2 309 1 2199 112 0 10 chr9 20606551 20606847 -97255780 - AluSx SINE Alu -19 293 1 271 269 0 0 chr9 20606847 20606914 -97255713 - MER5A DNA MER1_type -114 75 9 195 162 0 0 chr9 20607074 20607111 -97255516 + (CA)n Simple_repeat Simple_repeat 2 38 0 1480 150 25 83 chr9 20607117 20607279 -97255348 - AluJb SINE Alu -16 296 159 2292 91 0 10 chr9 20607279 20607586 -97255041 - AluSq SINE Alu -9 304 1 1480 150 25 83 chr9 20607586 20607737 -97254890 - AluJb SINE Alu -153 159 1 703 183 26 0 chr9 20608907 20609060 -97253567 - L1MB7 LINE L1 -3 6181 6025 1897 112 90 0 chr9 20609061 20609329 -97253298 + AluSc SINE Alu 1 292 -17 222 118 0 0 chr9 20610067 20610101 -97252526 + (A)n Simple_repeat Simple_repeat 1 34 0 2691 178 26 12 chr9 20610105 20610427 -97252200 - L1MB7 LINE L1 -161 6013 5680 2098 132 0 0 chr9 20610427 20610715 -97251912 + AluSx SINE Alu 1 288 -24 2691 178 26 12 chr9 20610715 20610899 -97251728 - L1MB7 LINE L1 -494 5680 5500 561 179 9 0 chr9 20610928 20611040 -97251587 - L1MB7 LINE L1 -895 5251 5139 1437 135 26 22 chr9 20611041 20611270 -97251357 + LTR54 LTR ERV1 1 230 -280 818 166 0 0 chr9 20611314 20611459 -97251168 + LTR54 LTR ERV1 366 510 0 609 237 0 0 chr9 20611459 20611611 -97251016 - L1MB7 LINE L1 -1005 5141 4990 959 174 5 63 chr9 20611611 20611818 -97250809 - AluJo SINE Alu -11 301 107 1477 191 69 0 chr9 20611840 20612102 -97250525 - AluJo SINE Alu -32 280 1 447 151 11 43 chr9 20612104 20612197 -97250430 - L1MB7 LINE L1 -1155 4991 4902 710 141 13 74 chr9 20612197 20612294 -97250333 - LTR23 LTR ERV1 -43 394 308 2477 70 0 3 chr9 20612294 20612594 -97250033 - AluY SINE Alu -12 299 1 710 141 13 74 chr9 20612594 20612645 -97249982 - LTR23 LTR ERV1 -129 308 255 2344 65 7 0 chr9 20613247 20613537 -97249090 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr9 20613982 20614003 -97248624 + GC_rich Low_complexity Low_complexity 1 21 0 1205 166 61 9 chr9 20614455 20614684 -97247943 + AluJb SINE Alu 9 249 -63 1459 106 79 131 chr9 20614740 20615069 -97247558 + AluJb SINE Alu 1 312 0 2514 53 0 7 chr9 20615591 20615914 -97246713 - AluSc SINE Alu 0 309 1 1790 139 17 14 chr9 20616592 20616698 -97245929 + LTR49 LTR ERV1 1 105 -490 459 0 0 0 chr9 20616698 20616749 -97245878 + (TG)n Simple_repeat Simple_repeat 1 51 0 1790 139 17 14 chr9 20616749 20616928 -97245699 + LTR49 LTR ERV1 105 287 -308 2039 152 12 12 chr9 20616928 20617264 -97245363 - MER1B DNA MER1_type -1 338 3 1077 176 126 76 chr9 20617265 20617567 -97245060 + LTR49 LTR ERV1 279 595 0 2106 136 148 84 chr9 20617762 20617868 -97244759 + MER4A LTR ERV1 1 99 -565 1903 141 16 20 chr9 20617868 20618172 -97244455 + AluJb SINE Alu 1 303 -9 2106 136 148 84 chr9 20618172 20618685 -97243942 + MER4A LTR ERV1 99 660 -4 2376 57 37 7 chr9 20618939 20619238 -97243389 - AluY SINE Alu -3 308 1 22 0 0 0 chr9 20619415 20619437 -97243190 + AT_rich Low_complexity Low_complexity 1 22 0 901 130 22 0 chr9 20619468 20619606 -97243021 - FLAM_C SINE Alu -2 141 1 1020 195 22 0 chr9 20619702 20619887 -97242740 + MER5A DNA MER1_type 1 189 0 260 196 113 62 chr9 20619924 20620021 -97242606 - MER5A DNA MER1_type -25 164 63 252 208 69 14 chr9 20619962 20620034 -97242593 + MER5A DNA MER1_type 81 156 -33 * 240 244 83 95 chr9 20620054 20620222 -97242405 - MIR SINE MIR -50 212 47 379 181 14 0 chr9 20620223 20620295 -97242332 + MIR SINE MIR 83 155 -107 1704 175 10 7 chr9 20620325 20620628 -97241999 + AluJo SINE Alu 1 304 -8 262 232 0 29 chr9 20620632 20620701 -97241926 + L1MC4 LINE L1 7976 8042 0 248 291 67 30 chr9 20620812 20620946 -97241681 + L1ME3A LINE L1 5933 6071 -99 1109 148 0 0 chr9 20621056 20621211 -97241416 + AluJb SINE Alu 135 289 -23 527 124 34 34 chr9 20621373 20621462 -97241165 - HY4 scRNA scRNA -4 89 1 1804 176 0 25 chr9 20621776 20622094 -97240533 - AluJb SINE Alu -2 310 1 187 43 0 0 chr9 20622153 20622176 -97240451 + (TTTA)n Simple_repeat Simple_repeat 2 124 0 1997 116 0 34 chr9 20622176 20622469 -97240158 - AluSx SINE Alu -1 305 1 2323 95 0 3 chr9 20622624 20622918 -97239709 - AluSx SINE Alu -15 297 5 315 310 9 44 chr9 20623039 20623152 -97239475 - L2 LINE L2 -1 3312 3204 1654 171 43 17 chr9 20623183 20623482 -97239145 - AluJo SINE Alu -5 307 1 263 349 114 0 chr9 20623975 20624124 -97238503 - MIR3 SINE MIR -21 187 22 2158 122 3 0 chr9 20624417 20624711 -97237916 - AluSx SINE Alu -12 300 6 2084 110 18 0 chr9 20624743 20625024 -97237603 - AluSx SINE Alu -26 286 1 365 298 24 40 chr9 20625565 20625689 -97236938 - L2 LINE L2 -5 3308 3187 23 0 0 0 chr9 20625700 20625723 -97236904 + AT_rich Low_complexity Low_complexity 1 23 0 976 157 7 0 chr9 20625971 20626124 -97236503 + FRAM SINE Alu 10 163 -13 2020 146 20 0 chr9 20626131 20626433 -97236194 + AluSx SINE Alu 5 312 0 1831 246 33 7 chr9 20626528 20626987 -97235640 - L1ME3A LINE L1 -9 6161 5691 498 200 0 33 chr9 20627009 20627099 -97235528 - AluJo SINE Alu -101 211 125 2417 74 0 0 chr9 20627236 20627533 -97235094 - AluY SINE Alu -14 297 1 21 0 0 0 chr9 20627540 20627561 -97235066 + AT_rich Low_complexity Low_complexity 1 21 0 941 147 0 0 chr9 20627648 20627777 -97234850 + FLAM_A SINE Alu 1 129 -4 2252 85 39 19 chr9 20628273 20628580 -97234047 - AluSq SINE Alu 0 313 1 2015 114 44 0 chr9 20628695 20628993 -97233634 - AluY SINE Alu 0 311 1 443 278 62 21 chr9 20629702 20629846 -97232781 + MER5A DNA MER1_type 22 171 -18 2214 89 13 16 chr9 20630132 20630435 -97232192 + AluSg SINE Alu 1 302 -8 2229 99 0 3 chr9 20630473 20630765 -97231862 + AluSg1 SINE Alu 1 291 -18 1980 118 14 0 chr9 20630937 20631216 -97231411 + AluSx SINE Alu 9 291 -21 1867 114 48 31 chr9 20632062 20632351 -97230276 - AluSx SINE Alu -18 294 1 295 336 23 15 chr9 20632603 20632734 -97229893 + MIR SINE MIR 72 203 -59 2128 105 0 7 chr9 20632745 20633031 -97229596 - AluSq SINE Alu -6 307 24 2206 121 3 0 chr9 20633059 20633364 -97229263 - AluSx SINE Alu -6 306 1 1043 165 0 75 chr9 20633925 20634113 -97228514 + AluSx SINE Alu 1 174 -138 1769 17 51 76 chr9 20634219 20634456 -97228171 - AluY SINE Alu -80 231 1 214 254 0 70 chr9 20634604 20634675 -97227952 - MIR3 SINE MIR -51 157 92 1777 153 17 3 chr9 20634781 20635068 -97227559 - AluJb SINE Alu -12 300 10 1417 162 15 98 chr9 20635076 20635162 -97227465 - AluJo SINE Alu -11 301 209 2159 128 0 3 chr9 20635162 20635458 -97227169 - AluSx SINE Alu -17 295 1 1417 162 15 98 chr9 20635458 20635471 -97227156 - AluJo SINE Alu -103 209 197 2312 192 72 77 chr9 20635471 20636085 -97226542 + LTR9 LTR ERV1 1 611 -1 1417 162 15 98 chr9 20636085 20636312 -97226315 - AluJo SINE Alu -115 197 1 206 242 152 30 chr9 20636317 20636416 -97226211 - MIR SINE MIR -71 191 81 256 253 55 77 chr9 20636428 20636519 -97226108 + MIR3 SINE MIR 119 207 -1 1204 184 58 143 chr9 20636791 20636898 -97225729 + MER34B LTR ERV1 1 115 -450 2017 128 0 10 chr9 20636898 20637187 -97225440 + AluJb SINE Alu 14 299 -13 1204 184 58 143 chr9 20637187 20637373 -97225254 + MER34B LTR ERV1 115 315 -250 1822 132 0 75 chr9 20637373 20637491 -97225136 + AluSx SINE Alu 1 126 -186 1973 152 0 10 chr9 20637491 20637793 -97224834 - AluJb SINE Alu -13 299 1 1822 132 0 75 chr9 20637793 20637993 -97224634 + AluSx SINE Alu 126 295 -17 1204 184 58 143 chr9 20637993 20638335 -97224292 + MER34B LTR ERV1 315 565 0 2300 86 7 0 chr9 20638639 20638931 -97223696 + AluSx SINE Alu 3 296 -16 333 322 43 47 chr9 20639315 20639526 -97223101 + L2 LINE L2 2827 3036 -236 280 243 56 75 chr9 20639533 20639640 -97222987 - L1ME LINE L1 -393 5728 5624 692 101 11 0 chr9 20639977 20640089 -97222538 + AluSg/x SINE Alu 195 307 0 520 155 0 0 chr9 20640326 20640410 -97222217 + AluS SINE Alu 221 304 -7 3064 106 2 2 chr9 20640446 20640869 -97221758 - THE1C-int LTR MaLR -1154 426 4 2100 135 61 25 chr9 20640872 20641234 -97221393 - THE1C LTR MaLR 0 375 1 266 313 88 12 chr9 20641243 20641403 -97221224 + L2 LINE L2 2148 2319 -995 1042 230 4 13 chr9 20641426 20641656 -97220971 + L1MB7 LINE L1 4013 4240 -1906 927 91 0 0 chr9 20641657 20641778 -97220849 + AluSg/x SINE Alu 172 292 -18 1315 145 29 154 chr9 20641835 20642007 -97220620 + AluJo SINE Alu 2 111 -191 2252 104 3 0 chr9 20642007 20642304 -97220323 + AluSx SINE Alu 1 298 -14 1315 145 29 154 chr9 20642304 20642475 -97220152 + AluJo SINE Alu 111 302 0 2235 118 0 3 chr9 20642487 20642793 -97219834 + AluSx SINE Alu 8 312 0 1355 213 13 3 chr9 20642793 20643093 -97219534 + L1MB7 LINE L1 4420 4722 -1424 973 180 0 0 chr9 20643102 20643263 -97219364 - AluJo/FRAM SINE Alu -15 297 137 1788 163 3 49 chr9 20643263 20643442 -97219185 - AluJo SINE Alu -2 310 124 216 0 0 0 chr9 20643442 20643466 -97219161 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1986 124 7 0 chr9 20643470 20643744 -97218883 - AluSq SINE Alu -37 276 1 1788 163 3 49 chr9 20643744 20643884 -97218743 - AluJo SINE Alu -191 121 1 1330 162 119 57 chr9 20643898 20644037 -97218590 + LTR23 LTR ERV1 1 130 -307 1389 203 37 14 chr9 20644037 20644333 -97218294 + AluJb SINE Alu 1 303 -9 854 176 8 0 chr9 20644336 20644467 -97218160 + FLAM_C SINE Alu 2 133 0 1330 162 119 57 chr9 20644467 20644596 -97218031 + LTR23 LTR ERV1 131 251 -186 2467 70 0 3 chr9 20644596 20644897 -97217730 + AluY SINE Alu 1 300 -11 1330 162 119 57 chr9 20644897 20644994 -97217633 + LTR23 LTR ERV1 251 394 -43 454 151 11 43 chr9 20644994 20645087 -97217540 + L1MB7 LINE L1 4902 4991 -1155 1436 193 68 4 chr9 20645089 20645354 -97217273 + AluJo SINE Alu 1 282 -30 935 184 5 63 chr9 20645374 20645581 -97217046 + AluJo SINE Alu 107 301 -11 624 237 0 0 chr9 20645581 20645733 -97216894 + L1MB7 LINE L1 4990 5141 -1005 834 166 0 0 chr9 20645733 20645878 -97216749 - LTR54 LTR ERV1 0 510 366 1437 135 26 22 chr9 20645922 20646151 -97216476 - LTR54 LTR ERV1 -280 230 1 568 179 9 0 chr9 20646152 20646264 -97216363 + L1MB7 LINE L1 5139 5251 -895 2720 178 26 12 chr9 20646293 20646477 -97216150 + L1MB7 LINE L1 5500 5680 -494 2082 132 0 0 chr9 20646477 20646765 -97215862 - AluSx SINE Alu -24 288 1 2720 178 26 12 chr9 20646765 20647087 -97215540 + L1MB7 LINE L1 5680 6013 -161 222 118 0 0 chr9 20647091 20647125 -97215502 + (T)n Simple_repeat Simple_repeat 1 34 0 1877 112 90 0 chr9 20647863 20648131 -97214496 - AluSc SINE Alu -17 292 1 742 183 26 0 chr9 20648132 20648285 -97214342 + L1MB7 LINE L1 6025 6181 -3 214 313 52 88 chr9 20648817 20649009 -97213618 + MIR3 SINE MIR 24 208 0 1461 150 25 83 chr9 20649455 20649606 -97213021 + AluJb SINE Alu 1 126 -186 2272 91 0 10 chr9 20649606 20649913 -97212714 + AluSq SINE Alu 1 304 -9 1461 150 25 83 chr9 20649913 20650075 -97212552 + AluJb SINE Alu 126 296 -16 195 162 0 0 chr9 20650081 20650118 -97212509 + (TG)n Simple_repeat Simple_repeat 2 38 0 293 269 0 0 chr9 20650278 20650345 -97212282 + MER5A DNA MER1_type 9 75 -114 2165 115 0 10 chr9 20650345 20650641 -97211986 + AluSx SINE Alu 1 293 -19 2361 88 7 0 chr9 20650643 20650975 -97211652 + AluY SINE Alu 1 334 0 1428 177 39 14 chr9 20651174 20651213 -97211414 - AluJb SINE Alu -22 290 253 197 0 71 0 chr9 20651213 20651241 -97211386 + (CAGTG)n Simple_repeat Simple_repeat 1 30 0 1428 177 39 14 chr9 20651241 20651484 -97211143 - AluJb SINE Alu -59 253 1 33 25 0 0 chr9 20651485 20651525 -97211102 + AT_rich Low_complexity Low_complexity 1 40 0 824 99 0 99 chr9 20651525 20651666 -97210961 - AluJb SINE Alu -185 127 1 1815 180 3 0 chr9 20651672 20651977 -97210650 - AluSx SINE Alu -6 306 1 252 0 0 0 chr9 20651996 20652024 -97210603 + (A)n Simple_repeat Simple_repeat 1 28 0 1450 174 13 68 chr9 20652027 20652118 -97210509 + AluJo SINE Alu 3 97 -215 2297 84 3 17 chr9 20652118 20652442 -97210185 + AluSc SINE Alu 1 320 0 1450 174 13 68 chr9 20652442 20652660 -97209967 + AluJo SINE Alu 97 296 -16 446 254 76 34 chr9 20652695 20652813 -97209814 + L2 LINE L2 3145 3267 -5 33 0 0 0 chr9 20653080 20653113 -97209514 + AT_rich Low_complexity Low_complexity 1 33 0 2429 71 0 0 chr9 20653113 20653407 -97209220 - AluY SINE Alu -17 294 1 1362 124 5 55 chr9 20653413 20653631 -97208996 - AluSg/x SINE Alu -17 295 89 773 197 0 8 chr9 20653645 20653772 -97208855 - FLAM_C SINE Alu -7 126 1 928 186 6 6 chr9 20653859 20654026 -97208601 - FRAM SINE Alu -18 158 1 763 172 78 0 chr9 20654411 20654539 -97208088 - FLAM_C SINE Alu -4 139 2 228 266 65 8 chr9 20654560 20654684 -97207943 - L1ME4a LINE L1 0 6121 5991 432 0 0 0 chr9 20654687 20654735 -97207892 + (CA)n Simple_repeat Simple_repeat 2 49 0 2321 99 3 0 chr9 20654982 20655286 -97207341 + AluSq SINE Alu 5 309 -4 2192 97 0 0 chr9 20656438 20656716 -97205911 - AluY SINE Alu -29 282 5 249 274 0 0 chr9 20657327 20657411 -97205216 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 1639 179 0 15 chr9 20657425 20657693 -97204934 - AluJb SINE Alu -48 264 1 443 205 8 90 chr9 20657698 20657820 -97204807 - MER101 LTR ERV1 -250 224 113 1528 167 26 23 chr9 20657820 20657966 -97204661 - AluJb SINE Alu -47 265 115 2340 70 0 7 chr9 20657966 20658277 -97204350 + AluSq SINE Alu 1 309 0 1528 167 26 23 chr9 20658277 20658393 -97204234 - AluJb SINE Alu -197 115 1 25 65 0 0 chr9 20658399 20658445 -97204182 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 20658517 20658538 -97204089 + AT_rich Low_complexity Low_complexity 1 21 0 534 163 0 0 chr9 20658559 20658639 -97203988 - AluS SINE Alu -233 80 1 1835 106 31 100 chr9 20659780 20660101 -97202526 - AluSx SINE Alu -13 299 1 2186 109 0 7 chr9 20660446 20660748 -97201879 - AluY SINE Alu -11 300 1 1569 161 26 48 chr9 20660749 20661060 -97201567 - AluJb SINE Alu -8 304 1 2189 108 6 13 chr9 20661169 20661483 -97201144 - AluSq SINE Alu -1 312 1 2264 76 42 0 chr9 20661828 20662116 -97200511 - AluY SINE Alu -11 300 1 207 200 0 0 chr9 20662191 20662236 -97200391 + T-rich Low_complexity Low_complexity 1 45 0 180 250 227 23 chr9 20662988 20663076 -97199551 + L2 LINE L2 2855 2960 -312 2344 68 10 3 chr9 20663245 20663537 -97199090 - AluSq SINE Alu -19 294 1 2108 114 3 25 chr9 20663558 20663874 -97198753 - AluSc SINE Alu 0 309 1 420 157 108 10 chr9 20663874 20663976 -97198651 - L1M4 LINE L1 -1904 4242 4131 409 170 113 14 chr9 20663978 20664118 -97198509 - Charlie5 DNA MER1_type 0 2623 2470 661 245 19 58 chr9 20664118 20664290 -97198337 - MLT1C LTR MaLR 0 467 303 2384 100 3 0 chr9 20664290 20664600 -97198027 - AluSp SINE Alu -2 311 1 661 245 19 58 chr9 20664600 20664635 -97197992 - MLT1C LTR MaLR -164 303 268 1364 94 69 0 chr9 20664787 20664990 -97197637 - Tigger3b DNA MER2_type -741 490 274 551 165 52 0 chr9 20664988 20665085 -97197542 - Tigger3b DNA MER2_type -1129 102 1 * 1845 125 58 0 chr9 20665138 20665433 -97197194 - AluSp SINE Alu -1 312 1 1534 271 55 4 chr9 20665722 20666212 -97196415 - L1MC4a LINE L1 -1870 5938 5424 328 317 144 35 chr9 20666259 20666634 -97195993 - L1MC4a LINE L1 -813 5333 4918 1707 153 19 34 chr9 20666824 20667144 -97195483 - L1MB8 LINE L1 -2 6176 5862 1921 235 46 26 chr9 20667145 20667715 -97194912 - L1M4 LINE L1 -1026 5120 4540 322 210 145 16 chr9 20667767 20667891 -97194736 - L1M4 LINE L1 -1553 4593 4454 256 215 0 15 chr9 20668224 20668289 -97194338 + L1MC4 LINE L1 6645 6708 -1334 231 36 0 0 chr9 20668884 20668912 -97193715 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 1547 139 128 19 chr9 20668919 20669185 -97193442 - AluSg SINE Alu -15 295 1 354 194 0 0 chr9 20669187 20669254 -97193373 - AluJo/FLAM SINE Alu -175 127 61 2143 93 3 17 chr9 20669278 20669568 -97193059 - AluSc SINE Alu -19 290 5 25 0 0 0 chr9 20671009 20671034 -97191593 + AT_rich Low_complexity Low_complexity 1 25 0 2403 94 0 0 chr9 20671085 20671384 -97191243 + AluSx SINE Alu 1 299 -13 1190 250 134 67 chr9 20672525 20672960 -97189667 + L1MEd LINE L1 505 1006 -5113 2050 146 0 3 chr9 20672960 20673261 -97189366 + AluSx SINE Alu 1 300 -12 1190 250 134 67 chr9 20673261 20673528 -97189099 + L1MEd LINE L1 1006 1254 -4865 228 67 0 0 chr9 20673531 20673561 -97189066 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1998 120 7 27 chr9 20673570 20673869 -97188758 - AluSq SINE Alu -20 293 1 2370 101 0 0 chr9 20674076 20674383 -97188244 - AluSq SINE Alu -5 308 2 241 300 14 0 chr9 20674528 20674598 -97188029 + MIR SINE MIR 191 261 -1 657 274 154 24 chr9 20675454 20675921 -97186706 - L2 LINE L2 -816 2498 1971 3576 165 6 12 chr9 20675934 20676618 -97186009 + L1MB4 LINE L1 5501 6180 0 2199 107 16 16 chr9 20676627 20676762 -97185865 + AluSg SINE Alu 1 135 -175 2460 76 3 0 chr9 20676762 20677063 -97185564 + AluY SINE Alu 1 302 -9 2199 107 16 16 chr9 20677063 20677236 -97185391 + AluSg SINE Alu 134 309 -1 341 253 146 0 chr9 20677308 20677486 -97185141 + L1ME4a LINE L1 5917 6120 -1 2102 101 32 0 chr9 20677902 20678180 -97184447 - AluSg1 SINE Alu -12 297 11 24 32 0 0 chr9 20679558 20679589 -97183038 + AT_rich Low_complexity Low_complexity 1 31 0 185 171 0 0 chr9 20680041 20680076 -97182551 - MER5C DNA MER1_type -18 306 272 306 223 116 18 chr9 20680187 20680299 -97182328 - MER5C DNA MER1_type -201 123 1 242 299 86 78 chr9 20681060 20681304 -97181323 + L2 LINE L2 2467 2712 -602 332 320 132 25 chr9 20681327 20681524 -97181103 + L2 LINE L2 2836 3053 -219 232 200 67 0 chr9 20682383 20682428 -97180199 + L2 LINE L2 2726 2773 -541 2277 99 7 0 chr9 20682438 20682730 -97179897 + AluSp SINE Alu 4 297 -16 214 200 0 25 chr9 20682748 20682788 -97179839 - L2 LINE L2 -500 2814 2776 524 263 15 30 chr9 20682857 20682990 -97179637 + L2 LINE L2 3183 3313 0 2261 93 0 7 chr9 20683192 20683481 -97179146 + AluSc SINE Alu 1 287 -22 755 289 26 64 chr9 20684184 20684576 -97178051 + L2 LINE L2 2760 3139 -174 1296 171 8 4 chr9 20684576 20684810 -97177817 - MER46A DNA MER2_type -1 235 1 755 289 26 64 chr9 20684810 20684865 -97177762 + L2 LINE L2 3139 3195 -118 907 180 87 0 chr9 20684892 20685075 -97177552 + MER58A DNA MER1_type 21 219 -5 331 348 71 0 chr9 20685082 20685194 -97177433 + L2 LINE L2 3191 3310 -3 30 45 0 0 chr9 20685380 20685424 -97177203 + AT_rich Low_complexity Low_complexity 1 44 0 602 153 0 10 chr9 20685424 20685522 -97177105 - FLAM_C SINE Alu -18 125 29 2148 126 3 0 chr9 20685727 20686021 -97176606 - AluSx SINE Alu -17 295 1 2352 62 0 42 chr9 20686079 20686386 -97176241 - AluY SINE Alu -17 294 1 22 35 0 0 chr9 20686435 20686464 -97176163 + AT_rich Low_complexity Low_complexity 1 29 0 1930 125 0 21 chr9 20688281 20688618 -97174009 - AluSx SINE Alu 0 332 2 1831 168 13 0 chr9 20688653 20688956 -97173671 + AluJb SINE Alu 3 309 -3 2425 92 0 0 chr9 20689023 20689327 -97173300 + AluSx SINE Alu 1 304 -8 28 29 0 0 chr9 20689487 20689522 -97173105 + AT_rich Low_complexity Low_complexity 1 35 0 787 273 75 20 chr9 20689630 20690229 -97172398 - L1ME LINE L1 -405 5757 5120 1183 157 105 62 chr9 20690472 20690676 -97171951 + L1MB8 LINE L1 5840 6065 -113 2274 107 3 0 chr9 20690676 20690974 -97171653 + AluSp SINE Alu 1 299 -14 1183 157 105 62 chr9 20690974 20691093 -97171534 + L1MB8 LINE L1 6065 6177 -1 526 276 103 66 chr9 20691130 20691282 -97171345 - L1ME LINE L1 -1425 4721 4576 417 170 30 0 chr9 20691282 20691382 -97171245 - L1MA7 LINE L1 -5 6286 6184 526 276 103 66 chr9 20691382 20691896 -97170731 - L1ME LINE L1 -1570 4576 4030 1064 184 5 0 chr9 20691920 20692110 -97170517 + MER58A DNA MER1_type 33 223 -1 240 211 169 134 chr9 20692140 20692225 -97170402 - L1ME LINE L1 -2154 3992 3911 415 188 73 10 chr9 20692225 20692321 -97170306 + U13 snRNA snRNA 1 102 -2 240 211 169 134 chr9 20692321 20692519 -97170108 - L1ME LINE L1 -2235 3911 3699 23 54 0 0 chr9 20692578 20692615 -97170012 + AT_rich Low_complexity Low_complexity 1 37 0 2005 133 7 20 chr9 20692658 20692960 -97169667 - AluSx SINE Alu -14 298 1 677 235 138 77 chr9 20693087 20693632 -97168995 + L1MC4 LINE L1 5272 5870 -1938 2012 151 3 0 chr9 20693632 20693937 -97168690 - AluSx SINE Alu -6 306 1 677 235 138 77 chr9 20693937 20694089 -97168538 + L1MC4 LINE L1 5870 6011 -1797 339 222 44 0 chr9 20694780 20694870 -97167757 + HsTC2 DNA Tc2 1805 1898 0 435 289 31 8 chr9 20694871 20694999 -97167628 - MIR SINE MIR -71 191 61 437 325 55 10 chr9 20695226 20695426 -97167201 - L1MEd LINE L1 -5488 631 423 265 91 23 0 chr9 20695422 20695466 -97167161 + L1PB2 LINE L1 5929 5973 -178 * 919 211 0 0 chr9 20695466 20695632 -97166995 + AluSg/x SINE Alu 131 296 -14 1324 61 0 99 chr9 20695632 20695707 -97166920 + L1PB1 LINE L1 5959 6040 -111 2008 98 0 0 chr9 20695707 20695972 -97166655 + AluY SINE Alu 1 265 -46 1324 61 0 99 chr9 20695972 20696109 -97166518 + L1PB1 LINE L1 6040 6150 -1 2365 82 20 0 chr9 20696414 20696718 -97165909 + AluSx SINE Alu 1 310 -2 325 299 222 11 chr9 20696726 20696987 -97165640 - L1MEd LINE L1 -5766 353 38 332 272 0 22 chr9 20697031 20697123 -97165504 + L1MC4 LINE L1 6614 6703 -1339 1771 87 0 0 chr9 20697241 20697459 -97165168 - AluSg/x SINE Alu -13 297 80 771 172 8 15 chr9 20698720 20698854 -97163773 - FLAM_C SINE Alu 0 133 1 352 264 157 34 chr9 20699500 20699575 -97163052 + MIR SINE MIR 36 100 -162 2286 110 0 7 chr9 20699575 20699883 -97162744 + AluSq SINE Alu 5 310 -3 352 264 157 34 chr9 20699883 20699985 -97162642 + MIR SINE MIR 100 235 -27 1851 155 49 9 chr9 20700073 20700421 -97162206 - MLT1B LTR MaLR -3 387 26 2203 107 17 0 chr9 20700421 20700710 -97161917 + AluSq SINE Alu 1 294 -19 330 278 22 0 chr9 20700719 20700809 -97161818 - L1MC4 LINE L1 -1339 6703 6612 993 147 0 0 chr9 20700827 20700997 -97161630 + (TA)n Simple_repeat Simple_repeat 1 170 0 552 203 202 49 chr9 20701575 20701737 -97160890 - MER33 DNA MER1_type -2263 361 225 2155 118 3 3 chr9 20701737 20702033 -97160594 - AluSx SINE Alu -16 296 1 552 203 202 49 chr9 20702033 20702149 -97160478 - MER33 DNA MER1_type -2399 225 1 234 159 45 0 chr9 20702149 20702193 -97160434 - L1MC5 LINE L1 -624 7337 7292 229 276 17 43 chr9 20702160 20702276 -97160351 - L1MC4 LINE L1 -547 7495 7383 * 435 315 95 82 chr9 20702549 20703013 -97159614 - L2 LINE L2 -496 2818 2349 198 0 0 0 chr9 20703013 20703035 -97159592 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 733 326 111 74 chr9 20703037 20703097 -97159530 - L2 LINE L2 -1605 1709 1653 2185 109 44 0 chr9 20703097 20703391 -97159236 + AluSx SINE Alu 1 307 -5 733 326 111 74 chr9 20703391 20704014 -97158613 - L2 LINE L2 -1661 1653 1054 1976 74 107 0 chr9 20704014 20704285 -97158342 + AluY SINE Alu 1 300 -11 733 326 111 74 chr9 20704285 20704547 -97158080 - L2 LINE L2 -2260 1054 803 859 141 0 8 chr9 20704547 20704675 -97157952 + AluJo/FLAM SINE Alu 1 127 -175 2199 114 16 0 chr9 20704677 20704983 -97157644 + AluSx SINE Alu 1 311 -1 733 326 111 74 chr9 20704983 20705340 -97157287 - L2 LINE L2 -2511 803 354 1880 129 73 15 chr9 20705406 20705746 -97156881 + MER46B DNA MER2_type 1 235 -1 1645 192 14 4 chr9 20706259 20706540 -97156087 - AluJo SINE Alu -28 284 1 23 92 0 0 chr9 20706622 20706687 -97155940 + AT_rich Low_complexity Low_complexity 1 65 0 199 135 0 39 chr9 20708256 20708308 -97154319 + (TATG)n Simple_repeat Simple_repeat 1 50 0 273 224 184 8 chr9 20708357 20708482 -97154145 - L1ME LINE L1 -260 5861 5715 260 315 70 21 chr9 20708921 20709162 -97153465 + L1ME LINE L1 5554 5806 -315 2202 111 3 0 chr9 20709856 20710145 -97152482 + AluSq SINE Alu 1 290 -23 456 128 0 0 chr9 20710146 20710224 -97152403 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 2224 93 3 3 chr9 20710279 20710568 -97152059 + AluSp SINE Alu 1 289 -24 3421 195 43 4 chr9 20710568 20711305 -97151322 - L1MB8 LINE L1 -11 6167 5402 2357 106 0 3 chr9 20711847 20712149 -97150478 - AluSc SINE Alu -8 301 1 2165 115 0 20 chr9 20712279 20712575 -97150052 + AluSq SINE Alu 1 290 -23 2430 82 0 3 chr9 20713467 20713770 -97148857 + AluY SINE Alu 1 302 -9 1324 122 0 0 chr9 20713772 20713960 -97148667 + AluSg/x SINE Alu 125 312 0 868 199 0 20 chr9 20713963 20714159 -97148468 - L1MB8 LINE L1 -1063 5083 4892 641 135 0 39 chr9 20714159 20714263 -97148364 + AluJ/FLAM SINE Alu 1 100 -212 2435 89 0 0 chr9 20714265 20714578 -97148049 - AluSq SINE Alu 0 313 1 24 0 0 29 chr9 20714843 20714857 -97147770 + AT_rich Low_complexity Low_complexity 1 14 -20 1978 155 0 3 chr9 20714857 20715147 -97147480 - AluSx SINE Alu -23 289 1 24 0 0 29 chr9 20715147 20715167 -97147460 + AT_rich Low_complexity Low_complexity 14 34 0 1542 147 0 100 chr9 20715169 20715488 -97147139 + AluJb SINE Alu 1 287 -25 228 35 0 0 chr9 20715488 20715517 -97147110 + (TA)n Simple_repeat Simple_repeat 1 29 0 1136 213 55 55 chr9 20715911 20716202 -97146425 + AluJo SINE Alu 1 291 -11 22 35 0 0 chr9 20716249 20716278 -97146349 + AT_rich Low_complexity Low_complexity 1 29 0 2516 74 3 0 chr9 20716379 20716691 -97145936 - AluSp SINE Alu 0 313 1 357 277 73 109 chr9 20718317 20718758 -97143869 + L1M2 LINE L1 485 909 -5940 570 185 165 145 chr9 20719098 20719222 -97143405 + AluJo SINE Alu 23 143 -169 2117 150 0 6 chr9 20719222 20719536 -97143091 + AluSx SINE Alu 1 312 0 570 185 165 145 chr9 20719536 20719660 -97142967 + AluJo SINE Alu 143 276 -36 27 0 0 0 chr9 20719661 20719688 -97142939 + AT_rich Low_complexity Low_complexity 1 27 0 1806 161 16 10 chr9 20719688 20719992 -97142635 + AluJb SINE Alu 2 307 -5 2334 114 53 21 chr9 20719997 20720578 -97142049 + Tigger3(Golem) DNA MER2_type 2369 3028 -1 1830 152 3 7 chr9 20721200 20721490 -97141137 + AluJb SINE Alu 1 289 -23 40 21 0 0 chr9 20721496 20721543 -97141084 + AT_rich Low_complexity Low_complexity 1 47 0 2143 78 25 0 chr9 20721796 20722078 -97140549 + AluSg SINE Alu 1 289 -21 303 141 0 0 chr9 20722081 20722145 -97140482 + (CAGG)n Simple_repeat Simple_repeat 2 65 0 940 124 212 87 chr9 20722389 20722543 -97140084 - AluJo SINE Alu -16 296 163 2175 118 3 7 chr9 20722543 20722848 -97139779 - AluSq SINE Alu -9 304 1 940 124 212 87 chr9 20722848 20722934 -97139693 - AluJo SINE Alu -149 163 26 1950 81 0 0 chr9 20722937 20723171 -97139456 - AluSc SINE Alu -54 255 22 420 228 41 0 chr9 20723214 20723319 -97139308 - MER5A DNA MER1_type -77 112 6 208 288 45 0 chr9 20723545 20723611 -97139016 - L2 LINE L2 -1343 1971 1903 2092 115 34 10 chr9 20723812 20724107 -97138520 + AluSx SINE Alu 1 302 -10 204 40 0 0 chr9 20724150 20724175 -97138452 + (A)n Simple_repeat Simple_repeat 1 25 0 2487 224 91 8 chr9 20724266 20724575 -97138052 + L1M4 LINE L1 3827 4109 -2037 189 0 0 0 chr9 20724575 20724596 -97138031 + (CA)n Simple_repeat Simple_repeat 2 22 0 2487 224 91 8 chr9 20724596 20725045 -97137582 + L1M4 LINE L1 4109 4648 -1498 2127 122 0 22 chr9 20726334 20726470 -97136157 + AluSx SINE Alu 1 138 -174 1924 146 7 3 chr9 20726470 20726778 -97135849 + AluSq SINE Alu 1 309 -4 2127 122 0 22 chr9 20726778 20726960 -97135667 + AluSx SINE Alu 138 312 0 2286 90 0 3 chr9 20726963 20727253 -97135374 + AluSx SINE Alu 1 289 -23 2561 206 70 25 chr9 20727610 20727646 -97134981 - L1ME1 LINE L1 -92 6074 6041 2375 86 3 0 chr9 20727646 20727947 -97134680 + AluSp SINE Alu 1 302 -11 2561 206 70 25 chr9 20727947 20728855 -97133772 - L1ME1 LINE L1 -125 6041 5084 2209 110 0 43 chr9 20728855 20728990 -97133637 + AluSx SINE Alu 1 140 -172 2393 69 3 13 chr9 20728990 20729294 -97133333 + AluY SINE Alu 2 302 -9 2209 110 0 43 chr9 20729294 20729484 -97133143 + AluSx SINE Alu 140 312 0 2561 206 70 25 chr9 20729484 20729510 -97133117 - L1ME1 LINE L1 -1082 5084 5061 1734 117 0 0 chr9 20729616 20729847 -97132780 + AluSg/x SINE Alu 67 297 -13 1176 196 5 14 chr9 20729847 20730066 -97132561 + AluJb SINE Alu 83 299 -13 1894 196 63 7 chr9 20730068 20730497 -97132130 + L1MB5 LINE L1 5686 6138 -36 409 55 0 0 chr9 20730514 20730569 -97132058 + Alu SINE Alu 244 298 -14 236 158 0 0 chr9 20730569 20730607 -97132020 - L1MEc LINE L1 -4325 2071 2034 377 243 78 0 chr9 20730650 20730753 -97131874 + MIR SINE MIR 108 218 -44 440 200 158 91 chr9 20730881 20731000 -97131627 - MER5B DNA MER1_type -1 177 43 2374 65 3 0 chr9 20731000 20731293 -97131334 + AluY SINE Alu 1 294 -17 440 200 158 91 chr9 20731293 20731338 -97131289 - MER5B DNA MER1_type -135 43 2 269 273 61 53 chr9 20731338 20731388 -97131239 + L2 LINE L2 801 849 -2465 2379 84 0 3 chr9 20731388 20731686 -97130941 + AluSg SINE Alu 1 297 -13 269 273 61 53 chr9 20731686 20731766 -97130861 + L2 LINE L2 849 932 -2382 764 308 31 80 chr9 20731767 20732154 -97130473 + L2 LINE L2 880 1247 -2067 483 140 290 30 chr9 20732256 20732356 -97130271 - FLAM_C SINE Alu -16 127 2 207 108 0 27 chr9 20732529 20732566 -97130061 + (TTTTTA)n Simple_repeat Simple_repeat 3 38 0 2264 278 118 58 chr9 20732581 20733214 -97129413 + L2 LINE L2 1618 2212 -1101 1717 184 14 7 chr9 20733214 20733507 -97129120 - AluJo SINE Alu -17 295 1 2264 278 118 58 chr9 20733507 20734202 -97128425 + L2 LINE L2 2212 2864 -449 2300 103 0 0 chr9 20734202 20734503 -97128124 - AluSp SINE Alu -12 301 1 2264 278 118 58 chr9 20734503 20734617 -97128010 + L2 LINE L2 2864 2970 -343 2009 125 24 0 chr9 20734617 20734904 -97127723 - AluSx SINE Alu -18 294 1 2264 278 118 58 chr9 20734904 20735033 -97127594 + L2 LINE L2 2970 3274 -39 2354 99 0 10 chr9 20735065 20735369 -97127258 - AluSq SINE Alu -12 301 1 1326 195 111 0 chr9 20735509 20735771 -97126856 - AluJo SINE Alu -21 291 1 592 210 8 8 chr9 20735830 20735949 -97126678 + FLAM_C SINE Alu 1 119 -24 1707 96 5 5 chr9 20735985 20736205 -97126422 + AluSx SINE Alu 12 231 -81 534 252 0 7 chr9 20736205 20736340 -97126287 - AluSq/x SINE Alu -178 134 1 10948 89 0 2 chr9 20736340 20737852 -97124775 - THE1B-int LTR MaLR -71 1509 1 2591 94 5 27 chr9 20737852 20738224 -97124403 - THE1B LTR MaLR 0 364 1 840 208 0 31 chr9 20738246 20738405 -97124222 + FRAM SINE Alu 2 155 -11 267 31 0 0 chr9 20738525 20738557 -97124070 + (CA)n Simple_repeat Simple_repeat 2 33 0 1847 157 7 7 chr9 20738557 20738850 -97123777 - AluSx SINE Alu -19 293 1 272 214 45 0 chr9 20738931 20739020 -97123607 + Charlie8 DNA MER1_type 50 142 -2275 842 184 0 0 chr9 20739671 20739807 -97122820 + AluJo SINE Alu 1 136 -176 3018 165 103 22 chr9 20739912 20740627 -97122000 + L1MA9 LINE L1 5506 6278 -34 1816 131 0 47 chr9 20740662 20740960 -97121667 + AluSq SINE Alu 1 284 -29 1634 153 0 8 chr9 20740974 20741229 -97121398 + AluJo SINE Alu 42 294 -18 1106 222 67 3 chr9 20741451 20741766 -97120861 + L1M4 LINE L1 2397 2731 -3415 926 130 0 20 chr9 20741767 20741913 -97120714 + FLAM_C SINE Alu 1 143 0 586 236 0 31 chr9 20741913 20742074 -97120553 + L1M4 LINE L1 2722 2877 -3269 21 36 0 0 chr9 20742074 20742102 -97120525 + AT_rich Low_complexity Low_complexity 1 28 0 2229 98 6 22 chr9 20742110 20742426 -97120201 - AluSp SINE Alu -1 312 2 21 57 0 0 chr9 20742437 20742472 -97120155 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr9 20742479 20742507 -97120120 + AT_rich Low_complexity Low_complexity 1 28 0 2431 70 0 0 chr9 20742601 20742899 -97119728 + AluY SINE Alu 1 298 -13 211 276 0 0 chr9 20742926 20742984 -97119643 + A-rich Low_complexity Low_complexity 3 60 0 1191 139 0 0 chr9 20743022 20743188 -97119439 + AluSg/x SINE Alu 135 300 -10 2909 237 53 17 chr9 20743189 20743660 -97118967 + L1M4 LINE L1 2953 3405 -2741 1649 171 44 0 chr9 20743660 20743934 -97118693 + AluJb SINE Alu 1 286 -26 207 88 0 0 chr9 20743934 20743968 -97118659 + (CAAT)n Simple_repeat Simple_repeat 2 35 0 2909 237 53 17 chr9 20743968 20744453 -97118174 + L1M4 LINE L1 3404 3945 -2201 2217 102 3 0 chr9 20744473 20744766 -97117861 - AluSx SINE Alu -18 294 1 7151 146 13 108 chr9 20744770 20745305 -97117322 - L1MA3 LINE L1 -1 6304 5720 2425 77 3 3 chr9 20745305 20745616 -97117011 - AluSp SINE Alu -2 311 1 7151 146 13 108 chr9 20745616 20746183 -97116444 - L1MA3 LINE L1 -585 5720 5101 360 0 0 0 chr9 20746183 20746223 -97116404 + (TTATG)n Simple_repeat Simple_repeat 2 41 0 2023 140 3 0 chr9 20746223 20746508 -97116119 - AluSx SINE Alu -26 286 1 7151 146 13 108 chr9 20746508 20746690 -97115937 - L1MA3 LINE L1 -1203 5102 4904 310 143 0 0 chr9 20746690 20746739 -97115888 + Alu SINE Alu 250 298 -4 7151 146 13 108 chr9 20746739 20747316 -97115311 - L1MA3 LINE L1 -1401 4904 4274 1370 204 27 30 chr9 20747316 20747615 -97115012 - AluJo SINE Alu -14 298 1 7151 146 13 108 chr9 20747615 20747888 -97114739 - L1MA3 LINE L1 -2031 4274 3977 2245 113 3 3 chr9 20747888 20748199 -97114428 - AluSx SINE Alu -1 311 1 7151 146 13 108 chr9 20748199 20748260 -97114367 - L1MA3 LINE L1 -2328 3977 3912 1875 148 42 0 chr9 20748260 20748543 -97114084 - AluSx SINE Alu -17 295 1 1089 82 0 7 chr9 20748545 20748680 -97113947 - AluSq/x SINE Alu -178 134 1 7151 146 13 108 chr9 20748680 20749152 -97113475 - L1MA3 LINE L1 -2394 3911 3396 1494 129 0 10 chr9 20749152 20749395 -97113232 - AluSq SINE Alu 0 316 76 7151 146 13 108 chr9 20749395 20749469 -97113158 - L1MA3 LINE L1 -2909 3396 3720 2315 89 0 17 chr9 20749469 20749771 -97112856 - AluSq SINE Alu -16 297 1 7151 146 13 108 chr9 20749771 20750093 -97112534 - L1MA3 LINE L1 -2584 3721 3370 3140 173 43 32 chr9 20750196 20750480 -97112147 - L1 LINE L1 -2511 5054 4775 2191 116 0 23 chr9 20750480 20750781 -97111846 - AluSx SINE Alu -18 294 1 3140 173 43 32 chr9 20750781 20751192 -97111435 - L1 LINE L1 -2790 4775 4346 1662 197 3 7 chr9 20751192 20751491 -97111136 - AluJb SINE Alu -14 298 1 3140 173 43 32 chr9 20751491 20751602 -97111025 - L1 LINE L1 -3219 4346 4238 7297 45 0 7 chr9 20751602 20752671 -97109956 - L1PA5 LINE L1 0 6154 5116 3321 59 0 0 chr9 20752671 20753113 -97109514 + L1PA5 LINE L1 4661 5102 -1044 10457 148 97 26 chr9 20753113 20753713 -97108914 - L1 LINE L1 -3325 4240 3684 1688 207 0 7 chr9 20753713 20754013 -97108614 - AluJo SINE Alu -14 298 1 10457 148 97 26 chr9 20754013 20754278 -97108349 - L1 LINE L1 -3881 3684 3439 1698 194 0 0 chr9 20754278 20754572 -97108055 - AluJb SINE Alu -16 296 3 10457 148 97 26 chr9 20754572 20755326 -97107301 - L1 LINE L1 -4126 3439 2740 2256 101 13 0 chr9 20755326 20755633 -97106994 - AluSq SINE Alu -2 311 1 10457 148 97 26 chr9 20755633 20756666 -97105961 - L1 LINE L1 -4825 2740 1400 698 197 27 22 chr9 20756666 20756849 -97105778 - L1MB3 LINE L1 -323 5860 5677 1669 182 97 16 chr9 20756874 20757369 -97105258 + L1M4 LINE L1 4099 4633 -1513 1704 168 7 7 chr9 20757373 20757658 -97104969 - AluSx SINE Alu -9 303 19 2520 255 65 16 chr9 20757874 20758773 -97103854 - L1MC4 LINE L1 -413 7629 6687 1128 259 136 8 chr9 20758767 20759245 -97103382 - L1MC4a LINE L1 -1372 6436 5898 * 188 298 35 18 chr9 20759254 20759311 -97103316 - MIR3 SINE MIR -31 177 120 278 329 84 30 chr9 20759824 20759840 -97102787 - MIR3 SINE MIR -14 194 180 1916 152 10 0 chr9 20759840 20760149 -97102478 - AluJb SINE Alu 0 312 1 278 329 84 30 chr9 20760149 20760299 -97102328 - MIR3 SINE MIR -28 180 19 2210 112 0 7 chr9 20760382 20760686 -97101941 + AluSg SINE Alu 1 302 -8 22 35 0 0 chr9 20761337 20761366 -97101261 + AT_rich Low_complexity Low_complexity 1 29 0 331 136 51 0 chr9 20762830 20762889 -97099738 - MLT1A1 LTR MaLR -13 352 291 410 149 15 0 chr9 20762889 20762956 -97099671 + AluJ/FLAM SINE Alu 2 69 -243 1699 157 28 53 chr9 20763181 20763499 -97099128 - AluSx SINE Alu -2 310 1 280 151 0 82 chr9 20763502 20763575 -97099052 - AluJ/FRAM SINE Alu -7 295 229 728 148 31 0 chr9 20763609 20763737 -97098890 - FLAM_C SINE Alu 0 133 2 48 18 0 0 chr9 20763832 20763887 -97098740 + AT_rich Low_complexity Low_complexity 1 55 0 1551 168 19 23 chr9 20763892 20764154 -97098473 - AluJo SINE Alu -51 261 1 734 208 49 33 chr9 20764206 20764389 -97098238 - MER20 DNA MER1_type -6 213 28 342 167 118 78 chr9 20764399 20764501 -97098126 + MIR SINE MIR 145 250 -12 320 265 31 10 chr9 20764506 20764604 -97098023 - MIR SINE MIR -48 214 115 1769 146 7 21 chr9 20764869 20765189 -97097438 - AluSq SINE Alu 0 316 1 2249 109 16 0 chr9 20765356 20765659 -97096968 - AluSx SINE Alu -4 308 1 34 0 0 0 chr9 20766045 20766079 -97096548 + AT_rich Low_complexity Low_complexity 1 34 0 4595 130 39 32 chr9 20766079 20767001 -97095626 - L1MA8 LINE L1 -10 6281 5354 264 200 0 0 chr9 20767001 20767061 -97095566 + (TA)n Simple_repeat Simple_repeat 2 61 0 839 214 113 30 chr9 20769833 20770155 -97092472 - L1MC3 LINE L1 -6 8035 7677 2523 255 65 16 chr9 20770181 20771080 -97091547 - L1MC4 LINE L1 -413 7629 6687 1128 259 136 8 chr9 20771074 20771552 -97091075 - L1MC4a LINE L1 -1372 6436 5898 * 188 298 35 18 chr9 20771561 20771618 -97091009 - MIR3 SINE MIR -31 177 120 278 329 84 30 chr9 20772131 20772147 -97090480 - MIR3 SINE MIR -14 194 180 1916 152 10 0 chr9 20772147 20772456 -97090171 - AluJb SINE Alu 0 312 1 278 329 84 30 chr9 20772456 20772606 -97090021 - MIR3 SINE MIR -28 180 19 2383 88 0 0 chr9 20772689 20772986 -97089641 + AluSg SINE Alu 1 297 -13 1176 196 5 14 chr9 20772986 20773205 -97089422 + AluJb SINE Alu 83 299 -13 1965 197 56 24 chr9 20773207 20773675 -97088952 + L1MB5 LINE L1 5686 6168 -6 1773 168 5 32 chr9 20773679 20774053 -97088574 + L1MB8 LINE L1 5814 6177 -1 2222 127 0 0 chr9 20774064 20774371 -97088256 + AluSg SINE Alu 1 307 -3 2825 197 25 14 chr9 20774374 20775009 -97087618 + L1MC2 LINE L1 5435 6076 -268 667 170 0 0 chr9 20775009 20775109 -97087518 - AluJ/FLAM SINE Alu -212 100 2 808 144 8 0 chr9 20775155 20775273 -97087354 - FLAM_C SINE Alu -15 128 10 3023 126 65 110 chr9 20775290 20775521 -97087106 + Tigger3b DNA MER2_type 337 577 -2451 629 162 135 0 chr9 20775521 20775538 -97087089 + FLAM_A SINE Alu 1 126 -7 667 138 0 0 chr9 20775538 20775632 -97086995 + FLAM_A SINE Alu 33 126 -16 3023 126 65 110 chr9 20775632 20776066 -97086561 + Tigger3b DNA MER2_type 577 1029 -1999 1914 127 15 0 chr9 20776066 20776333 -97086294 - AluSx SINE Alu -41 271 1 2257 121 0 0 chr9 20776333 20776630 -97085997 - AluSg SINE Alu -11 299 3 3023 126 65 110 chr9 20776630 20776908 -97085719 + Tigger3b DNA MER2_type 1027 1231 0 2749 211 33 24 chr9 20776908 20777232 -97085395 + L1M4 LINE L1 2452 2771 -3375 2016 104 3 69 chr9 20777232 20777550 -97085077 + AluSx SINE Alu 1 297 -15 2749 211 33 24 chr9 20777550 20777946 -97084681 + L1M4 LINE L1 2771 3179 -2967 260 270 10 20 chr9 20777964 20778064 -97084563 + L1M4 LINE L1 3256 3354 -2792 2093 131 3 0 chr9 20778065 20778356 -97084271 + AluSq SINE Alu 1 292 -21 229 305 0 0 chr9 20778432 20778491 -97084136 + T-rich Low_complexity Low_complexity 1 59 0 1802 147 0 4 chr9 20778601 20778860 -97083767 - AluSq SINE Alu -55 258 1 506 208 0 21 chr9 20778883 20778979 -97083648 + AluJ/FLAM SINE Alu 2 95 -217 1885 159 7 3 chr9 20779156 20779451 -97083176 + AluJb SINE Alu 1 296 -16 24 0 0 0 chr9 20779452 20779476 -97083151 + AT_rich Low_complexity Low_complexity 1 24 0 245 214 146 48 chr9 20779479 20779582 -97083045 + MIR SINE MIR 42 154 -108 541 260 24 112 chr9 20779662 20779912 -97082715 + MLT1F1 LTR MaLR 1 228 -314 1089 221 19 0 chr9 20779929 20780142 -97082485 + MLT1F1 LTR MaLR 351 567 0 2333 64 10 0 chr9 20780326 20780623 -97082004 - AluY SINE Alu -11 300 1 288 181 136 136 chr9 20780699 20780876 -97081751 + L1MC5 LINE L1 7749 7925 -36 361 288 16 24 chr9 20780896 20781021 -97081606 - MIR3 SINE MIR -3 205 82 2347 105 3 3 chr9 20781780 20782093 -97080534 - AluSq SINE Alu 0 313 1 1595 186 0 42 chr9 20782446 20782758 -97079869 + AluJo SINE Alu 3 301 -11 2436 87 0 0 chr9 20782790 20783089 -97079538 + AluSc SINE Alu 1 299 -10 21 0 0 0 chr9 20783089 20783110 -97079517 + AT_rich Low_complexity Low_complexity 1 21 0 585 207 78 52 chr9 20783125 20783192 -97079435 - L1MC5 LINE L1 -62 7899 7835 2257 109 10 0 chr9 20783192 20783494 -97079133 - AluSx SINE Alu -7 305 1 585 207 78 52 chr9 20783494 20783619 -97079008 - L1MC5 LINE L1 -126 7835 7702 2243 111 7 0 chr9 20783620 20783927 -97078700 - AluSx SINE Alu -3 309 1 887 207 12 6 chr9 20783929 20784098 -97078529 - FRAM SINE Alu -9 167 1 1637 175 11 0 chr9 20784143 20784411 -97078216 - AluJb SINE Alu -41 271 1 259 182 0 0 chr9 20784422 20784466 -97078161 - L2 LINE L2 -5 3308 3265 2253 224 12 31 chr9 20784487 20784629 -97077998 - MER82 DNA MER2_type 0 653 510 2360 60 13 20 chr9 20784629 20784930 -97077697 + AluY SINE Alu 1 299 -12 2253 224 12 31 chr9 20784930 20785270 -97077357 - MER82 DNA MER2_type -143 510 180 2372 95 0 0 chr9 20785279 20785585 -97077042 - AluSg1 SINE Alu -3 306 1 294 125 0 0 chr9 20785589 20785637 -97076990 - Alu SINE Alu -3 299 252 904 161 56 0 chr9 20785637 20785780 -97076847 + AluSg/x SINE Alu 138 288 -22 1712 186 51 51 chr9 20785780 20786211 -97076416 + MLT1D LTR MaLR 75 505 0 791 234 41 0 chr9 20786450 20786621 -97076006 + MER5B DNA MER1_type 1 178 0 882 174 13 0 chr9 20786915 20787064 -97075563 + FRAM SINE Alu 8 158 -18 1653 168 58 0 chr9 20787113 20787387 -97075240 + AluJb SINE Alu 2 291 -21 2001 138 3 3 chr9 20787413 20787710 -97074917 + AluSx SINE Alu 1 297 -15 251 36 0 0 chr9 20788095 20788123 -97074504 + U6 snRNA snRNA 1 28 -79 285 238 66 15 chr9 20788384 20788472 -97074155 + MIR SINE MIR 21 117 -91 385 248 228 0 chr9 20788960 20789061 -97073566 + MIR SINE MIR 35 158 -104 2274 113 0 0 chr9 20789098 20789400 -97073227 - AluSq SINE Alu -11 302 1 387 0 0 0 chr9 20789422 20789465 -97073162 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 2201 99 0 0 chr9 20789468 20789751 -97072876 - AluSx SINE Alu -29 283 1 1118 68 0 0 chr9 20789753 20789885 -97072742 - AluSp SINE Alu -181 132 1 352 284 115 33 chr9 20789947 20790130 -97072497 - L2 LINE L2 -267 3046 2849 180 231 77 0 chr9 20790609 20790648 -97071979 - L2 LINE L2 -9 3304 3263 1039 66 22 7 chr9 20790701 20790837 -97071790 - AluSg/x SINE Alu -13 297 160 490 265 184 14 chr9 20790837 20791060 -97071567 + L2 LINE L2 3049 3309 -4 716 210 0 0 chr9 20791088 20791212 -97071415 + FLAM_A SINE Alu 9 132 -10 2331 93 3 0 chr9 20791808 20792108 -97070519 + AluSp SINE Alu 1 301 -12 2145 118 7 7 chr9 20792444 20792748 -97069879 + AluSg SINE Alu 1 304 -6 1868 109 27 51 chr9 20792750 20793064 -97069563 + AluSq SINE Alu 1 307 0 1812 90 0 4 chr9 20793088 20793322 -97069305 - AluSg1 SINE Alu -76 233 1 548 254 99 6 chr9 20793427 20793608 -97069019 - MIR SINE MIR -57 205 8 509 188 0 0 chr9 20793669 20793749 -97068878 + AluS SINE Alu 1 80 -232 24 67 0 0 chr9 20793862 20793907 -97068720 + AT_rich Low_complexity Low_complexity 1 45 0 1359 196 26 26 chr9 20793913 20794029 -97068598 + AluJb SINE Alu 1 116 -196 2339 70 0 7 chr9 20794029 20794335 -97068292 - AluSq SINE Alu 0 304 1 1359 196 26 26 chr9 20794335 20794481 -97068146 + AluJb SINE Alu 115 265 -47 421 213 8 90 chr9 20794481 20794603 -97068024 + MER101 LTR ERV1 113 224 -250 1625 183 0 15 chr9 20794608 20794876 -97067751 + AluJb SINE Alu 1 264 -48 249 274 0 0 chr9 20794890 20794974 -97067653 + (CATATA)n Simple_repeat Simple_repeat 3 86 0 2314 99 0 0 chr9 20795585 20795879 -97066748 + AluY SINE Alu 5 298 -13 1190 250 134 67 chr9 20797020 20797455 -97065172 + L1MEd LINE L1 505 1006 -5113 2033 146 0 3 chr9 20797455 20797756 -97064871 + AluSx SINE Alu 1 300 -12 1190 250 134 67 chr9 20797756 20798023 -97064604 + L1MEd LINE L1 1006 1254 -4865 228 67 0 0 chr9 20798026 20798056 -97064571 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1992 120 7 27 chr9 20798065 20798364 -97064263 - AluSq SINE Alu -20 293 1 2371 101 0 0 chr9 20798571 20798878 -97063749 - AluSq SINE Alu -5 308 2 235 300 14 0 chr9 20799023 20799093 -97063534 + MIR SINE MIR 191 261 -1 665 274 150 21 chr9 20799949 20800417 -97062210 - L2 LINE L2 -816 2498 1971 3920 165 6 12 chr9 20800430 20801114 -97061513 + L1MB4 LINE L1 5501 6180 0 2194 107 16 16 chr9 20801123 20801258 -97061369 + AluSg SINE Alu 1 135 -175 2468 76 3 0 chr9 20801258 20801559 -97061068 + AluY SINE Alu 1 302 -9 2194 107 16 16 chr9 20801559 20801732 -97060895 + AluSg SINE Alu 134 309 -1 237 244 157 0 chr9 20801810 20801982 -97060645 + L1ME4a LINE L1 5922 6120 -1 2101 101 32 0 chr9 20802398 20802676 -97059951 - AluSg1 SINE Alu -12 297 11 1297 233 61 3 chr9 20803671 20803967 -97058660 - MLT1A1 LTR MaLR -52 313 1 397 290 75 0 chr9 20804135 20804242 -97058385 + L2 LINE L2 3158 3272 0 1764 124 39 0 chr9 20806022 20806279 -97056348 - AluSx SINE Alu -45 267 1 744 273 17 0 chr9 20806994 20807166 -97055461 - MIR SINE MIR -69 193 19 1708 156 35 0 chr9 20807659 20807947 -97054680 - AluJo SINE Alu -14 298 1 1598 166 19 4 chr9 20807987 20808252 -97054375 + AluJb SINE Alu 14 282 -30 321 242 16 102 chr9 20808329 20808457 -97054170 + L2 LINE L2 3197 3313 0 323 288 80 34 chr9 20808509 20808773 -97053854 + L1ME4a LINE L1 5677 5952 -169 314 344 37 25 chr9 20809059 20809222 -97053405 - MIR SINE MIR -77 185 21 969 104 0 15 chr9 20809777 20809911 -97052716 - FLAM_C SINE Alu -1 132 1 429 266 76 54 chr9 20810092 20810276 -97052351 + MER5A DNA MER1_type 1 188 -1 2133 111 13 10 chr9 20810376 20810683 -97051944 + AluSx SINE Alu 3 310 -2 562 244 91 10 chr9 20810697 20810894 -97051733 - L1MC4 LINE L1 -32 8010 7798 239 258 30 0 chr9 20811074 20811140 -97051487 + L3 LINE CR1 429 496 -1081 237 132 0 0 chr9 20863388 20863426 -96999201 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 250 0 0 chr9 20865686 20865738 -96996889 + LTR30 LTR ERV1 1 52 -670 916 154 64 94 chr9 20865738 20866114 -96996513 + LTR12 LTR ERV1 53 285 -429 299 236 0 0 chr9 20866115 20866187 -96996440 + LTR30 LTR ERV1 553 624 -98 704 185 25 0 chr9 20866187 20866306 -96996321 + LTR12 LTR ERV1 359 480 -234 519 287 106 17 chr9 20866421 20866658 -96995969 + MIR SINE MIR 5 262 0 540 267 193 5 chr9 20866792 20866994 -96995633 + MIR SINE MIR 5 244 -18 1038 273 4 19 chr9 20867378 20867638 -96994989 + MIR SINE MIR 4 259 -3 941 237 17 17 chr9 20870451 20870687 -96991940 - MIR SINE MIR -20 242 7 231 36 0 0 chr9 20871371 20871399 -96991228 + (CA)n Simple_repeat Simple_repeat 2 29 0 2237 108 3 10 chr9 20872162 20872469 -96990158 + AluSx SINE Alu 1 305 -7 247 286 99 56 chr9 20873225 20873386 -96989241 + MIR SINE MIR 25 141 -67 180 0 0 0 chr9 20873487 20873507 -96989120 + (TC)n Simple_repeat Simple_repeat 1 20 0 315 130 0 0 chr9 20873507 20873561 -96989066 + (CA)n Simple_repeat Simple_repeat 2 55 0 2194 133 6 26 chr9 20874443 20874789 -96987838 - MER1B DNA MER1_type 0 339 1 203 354 0 0 chr9 20875175 20875271 -96987356 + GA-rich Low_complexity Low_complexity 3 98 0 440 259 144 73 chr9 20875585 20876049 -96986578 - L2 LINE L2 0 3313 2817 299 184 29 10 chr9 20876110 20876213 -96986414 + GA-rich Low_complexity Low_complexity 1 105 0 662 269 80 9 chr9 20876677 20876889 -96985738 + MIR SINE MIR 18 244 -18 209 167 83 0 chr9 20876857 20876893 -96985734 + L2 LINE L2 3217 3255 -17 * 906 215 17 130 chr9 20876975 20877070 -96985557 - MIR SINE MIR 0 262 158 785 185 0 22 chr9 20877070 20877205 -96985422 - FLAM_A SINE Alu 0 133 2 906 215 17 130 chr9 20877205 20877402 -96985225 - MIR SINE MIR -104 158 3 875 176 0 0 chr9 20877458 20877589 -96985038 + FLAM_A SINE Alu 1 131 -2 213 380 38 0 chr9 20877960 20878039 -96984588 + L3b LINE CR1 1405 1486 -97 213 154 0 0 chr9 20878370 20878409 -96984218 + (TAA)n Simple_repeat Simple_repeat 1 39 0 548 246 72 82 chr9 20878513 20878757 -96983870 + MIR SINE MIR 3 256 -6 1652 260 49 24 chr9 20879259 20879767 -96982860 + MLT1H1 LTR MaLR 27 547 -8 396 0 0 0 chr9 20880722 20880766 -96981861 + (CA)n Simple_repeat Simple_repeat 1 44 0 1057 257 15 15 chr9 20880961 20881222 -96981405 - MIR SINE MIR 0 262 2 183 257 0 0 chr9 20881325 20881360 -96981267 + MIR SINE MIR 86 120 -142 429 323 88 80 chr9 20881366 20881741 -96980886 - L2 LINE L2 -32 3240 2863 1400 160 157 3 chr9 20881776 20882070 -96980557 - MER1B DNA MER1_type 0 339 1 220 231 15 0 chr9 20882153 20882218 -96980409 + (TA)n Simple_repeat Simple_repeat 1 66 0 248 246 0 0 chr9 20882282 20882339 -96980288 - Charlie7 DNA MER1_type -2524 88 32 643 287 42 38 chr9 20882478 20882743 -96979884 - L2 LINE L2 -525 2789 2524 284 288 104 24 chr9 20882850 20882975 -96979652 - MIR SINE MIR -106 156 22 515 329 18 22 chr9 20884634 20884862 -96977765 - MIR SINE MIR -21 241 15 359 276 82 7 chr9 20887257 20887527 -96975100 + L1MC4a LINE L1 5735 6027 -94 221 106 0 21 chr9 20890022 20890069 -96972558 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2400 107 0 0 chr9 20890405 20890714 -96971913 - AluSq SINE Alu -4 309 1 1536 188 0 38 chr9 20892269 20892561 -96970066 - AluJo SINE Alu -31 281 1 251 242 55 11 chr9 20892612 20892703 -96969924 - Charlie7 DNA MER1_type -2487 125 31 1344 121 74 5 chr9 20893450 20893665 -96968962 + MER30 DNA MER1_type 1 230 0 659 243 60 32 chr9 20893759 20893944 -96968683 - MIR SINE MIR -44 218 29 338 263 7 109 chr9 20894623 20894760 -96967867 - L2 LINE L2 0 3313 3191 22 56 0 0 chr9 20895142 20895178 -96967449 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr9 20895478 20895503 -96967124 + AT_rich Low_complexity Low_complexity 1 25 0 360 333 122 6 chr9 20895742 20895922 -96966705 + L2 LINE L2 3072 3272 0 523 235 34 0 chr9 20897075 20897194 -96965433 - L2 LINE L2 0 3313 3191 3525 211 49 12 chr9 20897353 20898246 -96964381 - L1MD2 LINE L1 -3 6356 5431 722 157 0 0 chr9 20898256 20898377 -96964250 - FLAM_C SINE Alu -3 140 20 1220 203 15 3 chr9 20898384 20898798 -96963829 - L1MD2 LINE L1 -743 5403 5022 386 236 36 18 chr9 20898884 20898994 -96963633 - MIR SINE MIR -114 148 37 2459 85 3 0 chr9 20899009 20899315 -96963312 - AluSp SINE Alu -6 307 1 232 312 58 26 chr9 20900460 20900614 -96962013 - L1MC4 LINE L1 -91 7951 7793 900 123 0 18 chr9 20900984 20901147 -96961480 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 2050 132 13 19 chr9 20901150 20901461 -96961166 - AluSx SINE Alu -3 309 1 231 286 38 86 chr9 20902416 20902521 -96960106 - MIR SINE MIR -57 151 52 362 280 102 19 chr9 20902743 20902900 -96959727 - MIR SINE MIR -57 205 36 25 31 0 0 chr9 20903281 20903313 -96959314 + AT_rich Low_complexity Low_complexity 1 32 0 370 309 36 41 chr9 20903375 20903569 -96959058 + MIR SINE MIR 56 248 -14 678 199 138 53 chr9 20903968 20904214 -96958413 + MLT1H LTR MaLR 1 267 -282 929 228 89 57 chr9 20905233 20905637 -96956990 + MER96B DNA MER1_type 1 417 0 419 305 54 18 chr9 20905641 20905808 -96956819 - L2 LINE L2 -535 2779 2607 311 292 124 58 chr9 20905860 20906134 -96956493 + L2 LINE L2 2060 2351 -963 1496 99 0 0 chr9 20906245 20906437 -96956190 - AluSg/x SINE Alu -15 297 106 377 264 90 32 chr9 20906511 20906666 -96955961 + L2 LINE L2 2373 2536 -778 2570 61 0 0 chr9 20907396 20907707 -96954920 - AluY SINE Alu 0 311 1 204 40 0 0 chr9 20907711 20907736 -96954891 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 20907910 20907931 -96954696 + AT_rich Low_complexity Low_complexity 1 21 0 660 284 63 38 chr9 20909086 20909325 -96953302 - MIR SINE MIR -10 252 8 25 51 0 0 chr9 20909517 20909556 -96953071 + AT_rich Low_complexity Low_complexity 1 39 0 209 278 0 0 chr9 20910560 20910614 -96952013 - MIR3 SINE MIR -49 159 106 306 320 87 6 chr9 20910627 20910799 -96951828 + MIR SINE MIR 21 206 -56 495 48 0 0 chr9 20911776 20911838 -96950789 + (CA)n Simple_repeat Simple_repeat 1 62 0 347 297 36 9 chr9 20912872 20912983 -96949644 - MIR SINE MIR -86 176 63 192 40 0 0 chr9 20913729 20913754 -96948873 + (A)n Simple_repeat Simple_repeat 1 25 0 390 304 119 26 chr9 20914679 20914906 -96947721 + MIR SINE MIR 15 262 0 315 49 0 0 chr9 20915550 20915591 -96947036 + (TG)n Simple_repeat Simple_repeat 1 41 0 735 316 39 13 chr9 20915962 20916196 -96946431 - MIR SINE MIR -10 252 13 268 284 15 0 chr9 20916401 20916468 -96946159 - MIR3 SINE MIR -26 182 115 2228 177 73 25 chr9 20916986 20917466 -96945161 + MLT1D LTR MaLR 3 505 0 306 164 0 18 chr9 20917568 20917623 -96945004 - L2 LINE L2 0 3272 3219 197 222 44 0 chr9 20918124 20918169 -96944458 + L2 LINE L2 3264 3310 -3 274 311 0 0 chr9 20918422 20918496 -96944131 + L2 LINE L2 3194 3267 -5 945 209 78 21 chr9 20918657 20918992 -96943635 - L1ME1 LINE L1 -6 6160 5827 433 276 7 26 chr9 20920471 20920623 -96942004 + MER117 DNA MER1_type 12 160 -37 1248 81 29 0 chr9 20922109 20922283 -96940344 - L1PA8 LINE L1 -3 6169 5991 205 377 29 51 chr9 20922292 20922430 -96940197 + L2 LINE L2 2926 3060 -212 1107 191 34 34 chr9 20922447 20922682 -96939945 - AluJo SINE Alu -5 307 73 328 247 0 0 chr9 20923234 20923307 -96939320 - MIR SINE MIR -86 176 104 1055 265 106 47 chr9 20923326 20923707 -96938920 + LTR33 LTR ERVL 15 431 -90 1798 216 68 9 chr9 20923707 20924146 -96938481 + MLT1C LTR MaLR 3 467 0 1055 265 106 47 chr9 20924146 20924236 -96938391 + LTR33 LTR ERVL 431 514 -7 609 265 26 0 chr9 20925521 20925672 -96936955 - MIR SINE MIR -39 223 69 1100 176 83 23 chr9 20926810 20927111 -96935516 - MER33 DNA MER1_type -4 320 2 213 310 40 20 chr9 20927342 20927442 -96935185 + L2 LINE L2 2879 2980 -292 461 255 20 7 chr9 20927865 20928037 -96934590 - MIR SINE MIR -61 147 13 2023 154 33 35 chr9 20929265 20929725 -96932902 + MLT1C LTR MaLR 8 466 -1 242 331 72 24 chr9 20929928 20930179 -96932448 - L2 LINE L2 -656 2658 2396 223 308 11 55 chr9 20930292 20930347 -96932280 + MIR SINE MIR 68 119 -143 1294 153 32 130 chr9 20930347 20930686 -96931941 - AluJb SINE Alu -6 306 1 223 308 11 55 chr9 20930686 20930721 -96931906 + MIR SINE MIR 119 154 -108 1986 149 3 3 chr9 20930851 20931140 -96931487 + AluJb SINE Alu 1 289 -23 265 333 102 57 chr9 20931965 20932349 -96930278 + L2 LINE L2 2304 2704 -610 453 264 19 0 chr9 20932968 20933074 -96929553 - MIR SINE MIR -107 155 48 412 121 172 50 chr9 20933285 20933384 -96929243 - FRAM SINE Alu -18 158 48 192 329 36 73 chr9 20933534 20933671 -96928956 + L2 LINE L2 3182 3313 0 246 267 42 50 chr9 20934044 20934164 -96928463 + MER20 DNA MER1_type 86 204 -15 1929 176 65 48 chr9 20934164 20934659 -96927968 - MLT1D LTR MaLR -2 503 1 575 269 110 0 chr9 20935224 20935409 -96927218 - MIR SINE MIR -26 236 33 10759 151 45 9 chr9 20935806 20938151 -96924476 - L1PBa LINE L1 -1523 5339 3079 327 49 0 0 chr9 20938151 20938192 -96924435 + (TG)n Simple_repeat Simple_repeat 2 42 0 1976 145 0 3 chr9 20938192 20938475 -96924152 - AluSx SINE Alu -28 284 3 10759 151 45 9 chr9 20938475 20941136 -96921491 - L1PBa LINE L1 -3782 3080 1 225 265 121 0 chr9 20941148 20941231 -96921396 + MIR3 SINE MIR 2 94 -114 4928 108 1 4 chr9 20941600 20942320 -96920307 + L1PA13 LINE L1 5435 6152 -11 327 169 15 103 chr9 20942420 20942615 -96920012 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 * 344 233 38 19 chr9 20942495 20942654 -96919973 + (TA)n Simple_repeat Simple_repeat 1 162 0 394 303 113 31 chr9 20942727 20942922 -96919705 + MIR SINE MIR 37 247 -15 326 252 72 9 chr9 20944021 20944132 -96918495 + MIR SINE MIR 109 226 -36 1897 169 30 0 chr9 20944157 20944566 -96918061 + MLT2B1 LTR ERVL 3 476 -39 477 62 0 0 chr9 20944566 20944631 -96917996 + (TG)n Simple_repeat Simple_repeat 2 66 0 1897 169 30 0 chr9 20944631 20944666 -96917961 + MLT2B1 LTR ERVL 476 508 -7 182 282 0 0 chr9 20944783 20944822 -96917805 - MIR SINE MIR -9 253 215 * 207 250 19 58 chr9 20944790 20944842 -96917785 - L2 LINE L2 -22 3291 3242 315 0 0 0 chr9 20945579 20945614 -96917013 + (TG)n Simple_repeat Simple_repeat 2 36 0 923 242 89 44 chr9 20945614 20946274 -96916353 + L2 LINE L2 2529 3265 -48 200 178 67 67 chr9 20947876 20947921 -96914706 - MIR SINE MIR -11 251 207 1141 224 12 0 chr9 20949519 20949774 -96912853 + L1PA15 LINE L1 4082 4339 -1807 6034 92 21 7 chr9 20949813 20951185 -96911442 + L1PA15 LINE L1 4316 5702 -463 2679 105 14 0 chr9 20951185 20951555 -96911072 + THE1C LTR MaLR 1 375 0 6034 92 21 7 chr9 20951555 20952024 -96910603 + L1PA15 LINE L1 5702 6163 -2 458 296 80 17 chr9 20952932 20953108 -96909519 + MIR SINE MIR 20 206 -56 344 288 210 10 chr9 20953756 20953961 -96908666 - MIR SINE MIR -3 259 14 1212 185 112 48 chr9 20954494 20954896 -96907731 + MLT2B1 LTR ERVL 7 475 -40 327 58 0 77 chr9 20954936 20954988 -96907639 + MLT2D LTR ERVL 367 414 0 * 646 301 59 70 chr9 20954988 20955441 -96907186 + MLT1K LTR MaLR 84 531 -57 294 50 0 0 chr9 20955646 20955686 -96906941 + (GA)n Simple_repeat Simple_repeat 1 40 0 819 196 80 20 chr9 20957371 20957570 -96905057 + L2 LINE L2 3103 3313 0 351 257 57 57 chr9 20957655 20957795 -96904832 + MIR SINE MIR 72 211 -51 186 43 0 0 chr9 20957808 20957831 -96904796 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 696 65 0 11 chr9 20957834 20957927 -96904700 - L1PA5 LINE L1 -8 6146 6055 848 38 0 0 chr9 20957927 20958032 -96904595 + L1P2 LINE L1 5653 5757 -397 25 0 0 0 chr9 20958142 20958167 -96904460 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr9 20958509 20958539 -96904088 + AT_rich Low_complexity Low_complexity 1 30 0 220 231 19 0 chr9 20958540 20958592 -96904035 + CT-rich Low_complexity Low_complexity 3 55 0 330 329 104 24 chr9 20959457 20959621 -96903006 + HAL1 LINE L1 380 556 -1951 937 151 0 41 chr9 20959828 20960000 -96902627 + MER20 DNA MER1_type 55 219 0 236 184 57 162 chr9 20960003 20960231 -96902396 + HAL1 LINE L1 750 953 -1554 540 301 32 57 chr9 20960236 20960638 -96901989 + L1ME3A LINE L1 5552 5943 -227 2392 108 3 48 chr9 20960682 20961035 -96901592 + MER1B DNA MER1_type 1 337 0 241 136 0 0 chr9 20961378 20961422 -96901205 + HAL1 LINE L1 971 1014 -1493 22 0 0 0 chr9 20961510 20961532 -96901095 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr9 20961557 20961590 -96901037 + AT_rich Low_complexity Low_complexity 1 33 0 1530 110 26 0 chr9 20961960 20962187 -96900440 + L1PA11 LINE L1 5942 6174 0 2049 130 25 25 chr9 20962844 20963205 -96899422 + MER46B DNA MER2_type 1 236 0 221 284 99 0 chr9 20963325 20963406 -96899221 - L2 LINE L2 0 3272 3184 299 308 48 10 chr9 20963609 20963713 -96898914 - MIR SINE MIR -60 148 41 221 330 73 9 chr9 20963720 20963829 -96898798 - L2 LINE L2 -9 3263 3148 711 214 96 39 chr9 20964177 20964532 -96898095 + L1ME4a LINE L1 5745 6119 -2 249 295 105 65 chr9 20964631 20964831 -96897796 + MIR SINE MIR 15 222 -40 274 361 39 0 chr9 20964885 20965015 -96897612 + MIR SINE MIR 54 188 -74 441 267 17 17 chr9 20966094 20966210 -96896417 + LTR16C LTR ERVL 161 276 -215 572 200 0 15 chr9 20966210 20966340 -96896287 - MLT1D LTR MaLR 0 505 378 186 333 60 43 chr9 20966710 20966827 -96895800 + MIR SINE MIR 34 152 -110 613 181 39 126 chr9 20967388 20967590 -96895037 + MER113 DNA MER1_type? 4 171 -350 459 114 23 0 chr9 20967590 20967678 -96894949 + L1MA8 LINE L1 6198 6287 -4 613 181 39 126 chr9 20967678 20967784 -96894843 + MER113 DNA MER1_type? 171 285 -236 447 328 23 0 chr9 20967959 20968087 -96894540 - MIR SINE MIR -111 151 21 267 320 173 7 chr9 20968829 20968979 -96893648 + MER5A DNA MER1_type 12 186 -3 21 0 0 0 chr9 20969526 20969547 -96893080 + AT_rich Low_complexity Low_complexity 1 21 0 5913 17 0 17 chr9 20970383 20971107 -96891520 - L1P LINE L1 -3218 2928 2216 2589 30 3 0 chr9 20971107 20971405 -96891222 - AluY SINE Alu -12 299 1 5913 17 0 17 chr9 20971405 20971430 -96891197 - L1P LINE L1 -3930 2216 2192 20269 29 7 0 chr9 20971430 20974638 -96887989 + L1PA4 LINE L1 2936 6152 -3 370 340 78 64 chr9 20974922 20975590 -96887037 - L2 LINE L2 0 3272 2595 941 260 0 4 chr9 20975808 20976035 -96886592 + Charlie1 DNA MER1_type 2 227 -2534 611 176 8 15 chr9 20976035 20976166 -96886461 + Charlie1 DNA MER1_type 2628 2757 -4 376 216 45 9 chr9 20976916 20977027 -96885600 + MER3 DNA MER1_type 79 193 -16 882 276 180 36 chr9 20977302 20977482 -96885145 + L2 LINE L2 2804 2957 -356 1127 202 28 0 chr9 20977482 20977695 -96884932 - MER20 DNA MER1_type 0 219 1 882 276 180 36 chr9 20977695 20977959 -96884668 + L2 LINE L2 2957 3312 -1 22 0 0 0 chr9 20978173 20978195 -96884432 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr9 20979155 20979189 -96883438 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 775 259 12 8 chr9 20979371 20979618 -96883009 - L1MA9 LINE L1 -40 6272 6025 333 260 150 0 chr9 20981080 20981180 -96881447 - L2 LINE L2 -5 3308 3194 2342 100 0 0 chr9 20982702 20983002 -96879625 - AluSg SINE Alu -10 300 1 1979 135 0 55 chr9 20983012 20983338 -96879289 - AluJb SINE Alu -4 308 1 308 89 0 0 chr9 20984821 20984866 -96877761 - MADE1 DNA Mariner 0 80 36 28 48 0 0 chr9 20984928 20984970 -96877657 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr9 20985565 20985610 -96877017 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 20988132 20988153 -96874474 + AT_rich Low_complexity Low_complexity 1 21 0 672 219 120 11 chr9 20989807 20989990 -96872637 + MER20 DNA MER1_type 17 219 0 729 257 18 27 chr9 20992125 20992347 -96870280 + L2 LINE L2 3094 3313 0 281 139 0 0 chr9 20992830 20992873 -96869754 - tRNA-Arg-CGC tRNA tRNA -32 44 2 5410 121 34 11 chr9 20993804 20994743 -96867884 + L1MA5A LINE L1 5332 6292 -5 187 184 0 0 chr9 20994842 20994880 -96867747 + L2 LINE L2 2995 3032 -281 244 229 57 0 chr9 20994976 20995046 -96867581 + L1ME4a LINE L1 5564 5637 -484 21 57 0 0 chr9 20995081 20995116 -96867511 + AT_rich Low_complexity Low_complexity 1 35 0 392 300 126 40 chr9 20995135 20995412 -96867215 + L1ME4a LINE L1 5669 5969 -152 318 311 215 19 chr9 20995896 20996042 -96866585 + MIR SINE MIR 4 120 -142 1199 165 103 96 chr9 20996042 20996244 -96866383 + MLT1B LTR MaLR 1 209 -181 273 57 0 0 chr9 20996244 20996279 -96866348 + (TG)n Simple_repeat Simple_repeat 1 35 0 1199 165 103 96 chr9 20996279 20996463 -96866164 + MLT1B LTR MaLR 209 390 0 318 311 215 19 chr9 20996463 20996525 -96866102 + MIR SINE MIR 120 253 -9 256 188 179 36 chr9 20996674 20996786 -96865841 + MIR SINE MIR 132 259 -3 21 0 0 0 chr9 20997182 20997203 -96865424 + AT_rich Low_complexity Low_complexity 1 21 0 518 159 28 0 chr9 20997203 20997310 -96865317 - L1MA7 LINE L1 -1 6290 6181 699 259 149 4 chr9 20998514 20998769 -96863858 - L2 LINE L2 -9 3304 3013 5475 31 7 0 chr9 20998827 20999526 -96863101 - L1PA4 LINE L1 -1207 4939 4236 7349 31 11 1 chr9 20999526 21000743 -96861884 + L1PA4 LINE L1 4930 6155 0 849 270 95 33 chr9 21000745 21001284 -96861343 + L1ME3A LINE L1 1918 2481 -3734 1704 178 0 43 chr9 21001284 21001587 -96861040 + AluJo SINE Alu 1 290 -22 849 270 95 33 chr9 21001587 21001810 -96860817 + L1ME3A LINE L1 2481 2689 -3526 1244 220 67 22 chr9 21001885 21002289 -96860338 - Zaphod DNA AcHobo -15 4016 3595 * 2225 230 74 48 chr9 21002287 21003207 -96859420 - Zaphod DNA AcHobo -3041 990 47 305 245 45 39 chr9 21003211 21003366 -96859261 + L1ME3A LINE L1 4197 4352 -1863 465 215 1 1 chr9 21003368 21003477 -96859150 - L1MC/D LINE L1 -366 5804 5695 * 1739 258 75 24 chr9 21003473 21003564 -96859063 + L1ME3A LINE L1 4387 4472 -1743 2044 116 0 20 chr9 21003564 21003856 -96858771 + AluSg SINE Alu 1 286 -24 1739 258 75 24 chr9 21003856 21004691 -96857936 + L1ME3A LINE L1 4472 5361 -854 2246 243 97 13 chr9 21004694 21005393 -96857234 + L1ME3A LINE L1 5424 6181 -58 369 207 69 28 chr9 21005456 21005601 -96857026 + L1MC5 LINE L1 7785 7935 -26 660 247 85 18 chr9 21005882 21006105 -96856522 + LTR50 LTR ERVL 1 238 -557 602 240 142 13 chr9 21006140 21006452 -96856175 + LTR50 LTR ERVL 201 795 0 182 365 42 0 chr9 21007301 21007397 -96855230 - MIR SINE MIR -142 120 21 567 293 83 4 chr9 21009180 21009433 -96853194 - MER102b DNA MER1_type -4 337 65 2091 145 92 8 chr9 21009687 21010080 -96852547 + MSTB LTR MaLR 1 426 0 692 253 27 11 chr9 21010137 21010323 -96852304 + MER5A DNA MER1_type 1 189 0 218 281 32 70 chr9 21010534 21010678 -96851949 - MIR SINE MIR -95 113 16 316 176 49 29 chr9 21010690 21010792 -96851835 - L1ME4a LINE L1 -1 6120 6017 27 29 0 0 chr9 21010965 21010999 -96851628 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr9 21011854 21011884 -96850743 + AT_rich Low_complexity Low_complexity 1 30 0 585 211 111 64 chr9 21012125 21012296 -96850331 + MIR SINE MIR 80 258 -4 580 283 61 24 chr9 21012522 21012734 -96849893 - MIR SINE MIR -20 242 23 219 103 0 0 chr9 21013402 21013441 -96849186 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 321 285 209 19 chr9 21013554 21013712 -96848915 + L3b LINE CR1 1274 1461 -122 225 49 73 49 chr9 21014148 21014189 -96848438 - MER110A LTR ERV1 -4 464 423 774 177 50 6 chr9 21014323 21014504 -96848123 + MER53 DNA DNA 1 189 0 182 243 149 65 chr9 21014842 21014949 -96847678 - L2 LINE L2 -840 2474 2359 420 327 118 66 chr9 21015006 21015884 -96846743 + L2 LINE L2 2295 3221 -51 493 279 32 37 chr9 21015894 21016084 -96846543 - MIR SINE MIR 0 262 74 342 241 43 91 chr9 21016086 21016273 -96846354 + MER5B DNA MER1_type 1 178 0 373 288 24 29 chr9 21017222 21017392 -96845235 + MIR SINE MIR 23 191 -71 192 77 0 0 chr9 21017423 21017449 -96845178 + (GA)n Simple_repeat Simple_repeat 1 26 0 743 241 6 11 chr9 21017454 21017628 -96844999 - MIR SINE MIR -56 206 34 22 0 0 0 chr9 21019373 21019395 -96843232 + AT_rich Low_complexity Low_complexity 1 22 0 431 295 116 0 chr9 21019795 21019924 -96842703 + MIR SINE MIR 8 151 -111 6968 59 13 16 chr9 21019939 21021526 -96841101 - SVA Other Other -683 1367 60 260 57 0 0 chr9 21021531 21021566 -96841061 - Alu SINE Alu -9 291 257 1237 136 6 0 chr9 21022358 21022534 -96840093 + AluSg/x SINE Alu 121 297 -13 2502 74 0 0 chr9 21022534 21022843 -96839784 + AluY SINE Alu 1 309 -2 651 183 38 23 chr9 21022852 21022983 -96839644 - FLAM_C SINE Alu 0 133 1 188 300 22 11 chr9 21022983 21023066 -96839561 + L2 LINE L2 1818 1904 -1410 398 263 22 50 chr9 21023328 21023614 -96839013 - L1MC/D LINE L1 -343 5778 5650 282 373 22 0 chr9 21024436 21024570 -96838057 + L2 LINE L2 2918 3054 -218 549 301 102 14 chr9 21024849 21025065 -96837562 + MIR SINE MIR 22 256 -6 970 201 0 0 chr9 21025552 21025716 -96836911 - FRAM SINE Alu -2 164 1 1362 95 5 26 chr9 21026111 21026300 -96836327 - AluSg/x SINE Alu -16 296 112 1014 322 65 47 chr9 21026316 21026452 -96836175 + L2 LINE L2 1656 1788 -1526 1902 132 0 31 chr9 21026452 21026741 -96835886 + AluSg SINE Alu 1 280 -30 1014 322 65 47 chr9 21026741 21027093 -96835534 + L2 LINE L2 1788 2132 -1182 1989 165 19 14 chr9 21027093 21027456 -96835171 + MLT1A1 LTR MaLR 1 365 0 1014 322 65 47 chr9 21027456 21027791 -96834836 + L2 LINE L2 2132 2495 -819 2175 116 3 13 chr9 21027803 21028114 -96834513 - AluSc SINE Alu -1 308 1 302 250 55 31 chr9 21028401 21028529 -96834098 + L2 LINE L2 3117 3247 -66 2031 99 0 61 chr9 21029604 21029781 -96832846 - AluY SINE Alu -17 294 143 2353 79 0 19 chr9 21029781 21030097 -96832530 - AluY SINE Alu 0 311 2 2031 99 0 61 chr9 21030097 21030232 -96832395 - AluY SINE Alu -168 143 1 267 273 136 11 chr9 21030311 21030399 -96832228 - L2 LINE L2 0 3272 3174 223 37 0 0 chr9 21030415 21030442 -96832185 + (TTTG)n Simple_repeat Simple_repeat 3 168 0 1783 125 7 4 chr9 21030442 21030714 -96831913 - AluSx SINE Alu -30 282 10 1232 87 34 166 chr9 21030827 21030984 -96831643 + MER30 DNA MER1_type 1 111 -119 2375 38 3 3 chr9 21030984 21031276 -96831351 - AluY SINE Alu -18 293 2 1232 87 34 166 chr9 21031276 21031383 -96831244 + MER30 DNA MER1_type 111 230 0 784 238 353 22 chr9 21032064 21033011 -96829616 - L2 LINE L2 0 3313 2038 238 263 100 12 chr9 21033628 21033708 -96828919 - MIR3 SINE MIR -39 169 83 388 230 62 0 chr9 21034319 21034432 -96828195 - L1ME2 LINE L1 -10 6154 6035 253 266 88 86 chr9 21034557 21034771 -96827856 - L1ME4a LINE L1 0 6121 5909 1582 171 0 23 chr9 21034771 21035080 -96827547 - AluJb SINE Alu -10 302 1 253 266 88 86 chr9 21035080 21035343 -96827284 - L1ME4a LINE L1 -212 5909 5643 382 343 95 44 chr9 21035348 21035622 -96827005 - L1ME4a LINE L1 -532 5589 5302 2014 107 35 0 chr9 21035625 21035915 -96826712 + AluY SINE Alu 1 300 -11 337 206 32 40 chr9 21036007 21036133 -96826494 - L1MC5 LINE L1 -65 7896 7772 312 295 60 81 chr9 21036137 21036368 -96826259 - L1ME4a LINE L1 -865 5281 5056 2189 93 0 26 chr9 21036368 21036678 -96825949 + AluSx SINE Alu 1 302 -10 312 295 60 81 chr9 21036678 21036731 -96825896 - L1ME4a LINE L1 -1090 5056 5003 302 303 81 38 chr9 21037546 21037731 -96824896 - L1M4 LINE L1 -865 5281 5089 1776 148 7 3 chr9 21039411 21039702 -96822925 - AluJb SINE Alu -20 292 1 270 0 0 0 chr9 21039954 21039984 -96822643 + (T)n Simple_repeat Simple_repeat 1 30 0 207 235 0 44 chr9 21040029 21040097 -96822530 - L2 LINE L2 -906 2408 2344 450 241 83 0 chr9 21040191 21040324 -96822303 - L1ME4a LINE L1 -13 6108 5965 2003 123 0 10 chr9 21042077 21042378 -96820249 + AluSx SINE Alu 1 298 -14 1828 168 0 0 chr9 21042562 21042866 -96819761 + AluJb SINE Alu 3 306 -6 1135 183 64 0 chr9 21043016 21043235 -96819392 + MER46A DNA MER2_type 2 234 -2 1062 206 109 29 chr9 21044626 21044937 -96817690 + MER2 DNA MER2_type 3 338 -7 825 196 0 0 chr9 21044981 21045154 -96817473 - FAM SINE Alu -4 45 1 206 343 0 0 chr9 21045629 21045699 -96816928 - MIR SINE MIR -56 206 137 337 301 0 0 chr9 21045892 21045965 -96816662 - MER2 DNA MER2_type 0 345 273 21 0 0 0 chr9 21046114 21046135 -96816492 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr9 21048087 21048143 -96814484 + GC_rich Low_complexity Low_complexity 1 56 0 621 151 83 135 chr9 21048152 21048247 -96814380 - MER2 DNA MER2_type -113 232 150 2293 106 0 0 chr9 21048247 21048559 -96814068 + AluSx SINE Alu 1 312 0 621 151 83 135 chr9 21048559 21048655 -96813972 - MER2 DNA MER2_type -195 150 51 1495 169 51 4 chr9 21048943 21049216 -96813411 - AluJo SINE Alu -26 286 1 266 311 40 70 chr9 21049335 21049563 -96813064 + L2 LINE L2 2684 2904 -410 1118 165 55 84 chr9 21049598 21049967 -96812660 - MLT1B LTR MaLR -16 374 6 2875 91 68 127 chr9 21050522 21051082 -96811545 - MER1A DNA MER1_type 0 527 1 216 111 0 0 chr9 21051287 21051323 -96811304 + (TG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 21051719 21051771 -96810856 + GC_rich Low_complexity Low_complexity 1 52 0 501 155 17 95 chr9 21052239 21052355 -96810272 - MER20 DNA MER1_type -112 107 1 425 215 43 134 chr9 21052648 21052857 -96809770 - MIR3 SINE MIR -14 194 5 824 185 35 4 chr9 21052914 21053091 -96809536 - MLT1F LTR MaLR -17 525 371 1816 161 0 3 chr9 21053098 21053396 -96809231 + AluJb SINE Alu 1 297 -15 468 175 12 0 chr9 21053420 21053500 -96809127 + MIR SINE MIR 108 188 -74 949 281 78 41 chr9 21053513 21053948 -96808679 + MLT1J LTR MaLR 1 451 -60 1881 117 48 7 chr9 21053953 21054244 -96808383 + AluSx SINE Alu 1 303 -9 279 213 40 27 chr9 21054292 21054367 -96808260 + MLT1J LTR MaLR 427 502 -9 209 152 109 0 chr9 21054514 21054560 -96808067 + MIR SINE MIR 19 69 -139 1652 200 3 7 chr9 21054587 21054892 -96807735 - AluJb SINE Alu -8 304 1 302 277 90 58 chr9 21055742 21055930 -96806697 - L1M4 LINE L1 -830 5316 5123 345 218 40 50 chr9 21055964 21056065 -96806562 - MIR SINE MIR -36 226 127 370 214 16 137 chr9 21056907 21057089 -96805538 + L2 LINE L2 2925 3084 -188 305 297 103 22 chr9 21057242 21057427 -96805200 + MIR SINE MIR 36 235 -27 470 268 39 16 chr9 21057537 21057664 -96804963 + L2 LINE L2 3184 3313 0 737 189 142 6 chr9 21058168 21058337 -96804290 + MER3 DNA MER1_type 1 192 -17 394 327 18 0 chr9 21059504 21059614 -96803013 + MIR SINE MIR 36 147 -61 1115 228 58 102 chr9 21059636 21059771 -96802856 + MLT2B1 LTR ERVL 2 141 -379 1878 128 25 0 chr9 21059771 21060053 -96802574 - AluSq SINE Alu -24 289 1 1751 160 0 23 chr9 21060058 21060358 -96802269 - AluJo SINE Alu -15 297 5 1115 228 58 102 chr9 21060358 21060695 -96801932 + MLT2B1 LTR ERVL 145 459 -61 914 18 9 0 chr9 21060696 21060808 -96801819 + (TTTTC)n Simple_repeat Simple_repeat 5 117 0 242 114 0 23 chr9 21060809 21060853 -96801774 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 1933 111 0 14 chr9 21060857 21061136 -96801491 - AluSq SINE Alu -38 275 1 335 131 49 16 chr9 21061136 21061197 -96801430 + MLT2B1 LTR ERVL 450 512 -8 2529 176 5 0 chr9 21061795 21062204 -96800423 - MLT1C LTR MaLR -56 411 1 1018 194 0 104 chr9 21062232 21062510 -96800117 - L1MC5 LINE L1 -1088 6873 6625 1956 142 0 3 chr9 21062602 21062911 -96799716 + AluSx SINE Alu 1 308 -4 385 248 91 16 chr9 21063299 21063420 -96799207 + MIR SINE MIR 90 219 -43 1892 131 3 0 chr9 21063441 21063747 -96798880 - AluSx SINE Alu 0 312 7 468 234 9 37 chr9 21063805 21063912 -96798715 - MER5B DNA MER1_type 0 178 75 2276 83 3 0 chr9 21064300 21064601 -96798026 - AluSp SINE Alu -11 302 1 2355 124 24 8 chr9 21064682 21065061 -96797566 + L1PB3 LINE L1 5704 6088 -66 372 197 0 0 chr9 21065039 21065105 -96797522 - L1PB3 LINE L1 -61 6093 6028 * 252 0 0 0 chr9 21065182 21065210 -96797417 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 687 271 33 20 chr9 21065230 21065474 -96797153 - L1ME LINE L1 -330 5791 5545 1377 285 88 25 chr9 21065646 21065684 -96796943 - L1ME3A LINE L1 -116 6054 6020 451 243 47 0 chr9 21065684 21065791 -96796836 - MER81 DNA DNA -2 112 1 1377 285 88 25 chr9 21065791 21066482 -96796145 - L1ME3A LINE L1 -150 6020 5279 618 241 74 6 chr9 21066705 21066867 -96795760 + MER5A DNA MER1_type 17 189 0 1034 164 6 0 chr9 21067505 21067682 -96794945 - AluJo/FRAM SINE Alu -3 309 132 1624 167 0 26 chr9 21067684 21067996 -96794631 - AluJo SINE Alu -8 304 1 983 172 0 0 chr9 21069556 21069713 -96792914 - AluJb SINE Alu -19 293 137 491 261 8 8 chr9 21069719 21069836 -96792791 + MIR SINE MIR 82 198 -64 756 246 17 0 chr9 21069836 21070011 -96792616 + MER5B DNA MER1_type 1 178 0 23 0 0 0 chr9 21070051 21070074 -96792553 + AT_rich Low_complexity Low_complexity 1 23 0 270 232 71 0 chr9 21070148 21070204 -96792423 - L2 LINE L2 0 3272 3213 1505 143 189 38 chr9 21070509 21070879 -96791748 + MSTC LTR MaLR 3 428 0 1555 189 47 20 chr9 21071955 21072383 -96790244 - MLT1H LTR MaLR -3 546 1 895 282 65 3 chr9 21072596 21072890 -96789737 - L1MC4a LINE L1 -1883 5925 5614 2285 100 0 0 chr9 21072976 21073287 -96789340 - AluSq SINE Alu -2 311 1 671 193 59 0 chr9 21073294 21073413 -96789214 - FLAM_A SINE Alu -7 126 1 22 39 0 39 chr9 21073920 21073941 -96788686 + AT_rich Low_complexity Low_complexity 1 21 -28 1562 175 42 0 chr9 21073941 21074226 -96788401 + AluJb SINE Alu 3 299 -13 22 39 0 39 chr9 21074226 21074255 -96788372 + AT_rich Low_complexity Low_complexity 21 49 0 382 349 12 6 chr9 21075096 21075265 -96787362 - MER117 DNA MER1_type -24 173 4 324 0 0 0 chr9 21075470 21075506 -96787121 + (TG)n Simple_repeat Simple_repeat 1 36 0 453 226 21 0 chr9 21075679 21075772 -96786855 + MER5A DNA MER1_type 10 104 -85 1523 173 24 21 chr9 21075781 21075925 -96786702 + AluJo SINE Alu 1 143 -169 2453 116 11 26 chr9 21075925 21076306 -96786321 + THE1C LTR MaLR 1 375 0 1523 173 24 21 chr9 21076306 21076450 -96786177 + AluJo SINE Alu 143 290 -22 259 222 0 0 chr9 21076470 21076524 -96786103 + MER5A DNA MER1_type 136 189 0 228 284 25 25 chr9 21076570 21076651 -96785976 - L2 LINE L2 -19 3253 3173 1494 191 10 32 chr9 21077948 21078125 -96784502 - AluJo SINE Alu -5 307 138 1627 156 3 58 chr9 21078125 21078453 -96784174 - AluJb SINE Alu -2 310 1 1494 191 10 32 chr9 21078453 21078589 -96784038 - AluJo SINE Alu -174 138 1 340 138 231 0 chr9 21078593 21078658 -96783969 - MER3 DNA MER1_type -101 108 29 320 298 64 35 chr9 21078730 21078871 -96783756 + MIR3 SINE MIR 46 190 -18 803 211 32 0 chr9 21079217 21079373 -96783254 - MER5A DNA MER1_type 0 189 29 921 135 28 67 chr9 21081310 21081402 -96781225 - LTR32 LTR ERVL 0 471 388 2247 103 0 3 chr9 21081402 21081694 -96780933 - AluSx SINE Alu -21 291 1 921 135 28 67 chr9 21081694 21081779 -96780848 - LTR32 LTR ERVL -83 388 301 * 2103 156 24 0 chr9 21081773 21082106 -96780521 - LTR32 LTR ERVL -117 354 14 624 127 0 0 chr9 21082775 21082854 -96779773 - AluS SINE Alu -232 80 2 370 94 0 0 chr9 21082858 21082911 -96779716 + MADE1 DNA Mariner 28 80 0 306 331 46 0 chr9 21082917 21083047 -96779580 + L2 LINE L2 3137 3272 0 256 324 123 20 chr9 21084868 21085072 -96777555 - MIR SINE MIR -6 256 32 31907 101 23 58 chr9 21085920 21092282 -96770345 - L1PA7 LINE L1 -2 6152 22 403 259 98 0 chr9 21092434 21092577 -96770050 - MIR SINE MIR -3 259 103 25 75 0 0 chr9 21093165 21093218 -96769409 + AT_rich Low_complexity Low_complexity 1 53 0 2114 118 17 0 chr9 21093258 21093555 -96769072 - AluSx SINE Alu -10 302 1 304 221 23 70 chr9 21093770 21093856 -96768771 + Tigger5 DNA MER2_type 1 82 -2241 * 1461 139 34 0 chr9 21093842 21094080 -96768547 + Tigger5 DNA MER2_type 2077 2322 -1 1945 142 3 14 chr9 21095277 21095572 -96767055 + AluJo SINE Alu 1 292 -20 225 0 0 0 chr9 21097202 21097227 -96765400 + (A)n Simple_repeat Simple_repeat 1 25 0 366 258 34 0 chr9 21099887 21099976 -96762651 + L1MC4 LINE L1 6612 6703 -1339 27 49 0 0 chr9 21102442 21102483 -96760144 + AT_rich Low_complexity Low_complexity 1 41 0 190 234 21 0 chr9 21102844 21102891 -96759736 - L2 LINE L2 -2569 745 698 23 33 0 0 chr9 21103804 21103834 -96758793 + AT_rich Low_complexity Low_complexity 1 30 0 438 36 0 0 chr9 21104677 21104733 -96757894 + (CA)n Simple_repeat Simple_repeat 2 57 0 396 277 98 62 chr9 21104773 21105080 -96757547 + L1ME4a LINE L1 5591 5908 -213 2295 101 0 3 chr9 21105176 21105482 -96757145 - AluSc SINE Alu 0 309 5 229 314 38 31 chr9 21105629 21105788 -96756839 + L1ME LINE L1 5544 5703 -418 258 32 0 0 chr9 21106116 21106147 -96756480 + (TG)n Simple_repeat Simple_repeat 2 32 0 183 80 0 0 chr9 21106328 21106353 -96756274 + (TCCA)n Simple_repeat Simple_repeat 2 26 0 375 244 256 6 chr9 21106667 21106831 -96755796 + MIR SINE MIR 37 241 -21 414 290 48 60 chr9 21108365 21108587 -96754040 + MIR SINE MIR 2 222 -40 246 136 0 0 chr9 21108623 21108667 -96753960 + (T)n Simple_repeat Simple_repeat 1 44 0 1641 168 39 0 chr9 21108784 21109064 -96753563 - AluJo SINE Alu -21 291 1 262 309 79 40 chr9 21109408 21109534 -96753093 + L2 LINE L2 3183 3313 0 642 240 16 0 chr9 21109804 21109933 -96752694 + FLAM_A SINE Alu 1 131 -2 579 249 156 10 chr9 21110006 21110211 -96752416 + MIR SINE MIR 14 248 -14 2255 103 0 0 chr9 21110239 21110529 -96752098 - AluSx SINE Alu -22 290 1 198 0 0 0 chr9 21110904 21110926 -96751701 + (A)n Simple_repeat Simple_repeat 1 22 0 190 148 0 33 chr9 21111140 21111201 -96751426 + (CAAAAA)n Simple_repeat Simple_repeat 1 59 0 285 73 0 109 chr9 21112074 21112129 -96750498 - L1ME1 LINE L1 -12 6154 6106 1983 147 3 10 chr9 21112158 21112470 -96750157 - AluJb SINE Alu -2 310 1 390 175 29 87 chr9 21112484 21112587 -96750040 - L1M4 LINE L1 -642 5536 5440 4915 177 31 20 chr9 21112600 21113872 -96748755 - L1MB7 LINE L1 -10 6174 4893 515 259 95 13 chr9 21113992 21114150 -96748477 + MIR SINE MIR 3 173 -89 2202 113 3 10 chr9 21116518 21116819 -96745808 - AluSx SINE Alu -13 299 1 180 0 0 0 chr9 21116845 21116865 -96745762 + (T)n Simple_repeat Simple_repeat 1 20 0 216 227 0 0 chr9 21118395 21118439 -96744188 - L2 LINE L2 -8 3305 3262 645 250 112 18 chr9 21118488 21118712 -96743915 + MIR SINE MIR 16 260 -2 1091 213 139 32 chr9 21118720 21118845 -96743782 + MER2 DNA MER2_type 2 112 -232 1892 133 6 41 chr9 21118845 21119162 -96743465 - AluSp SINE Alu -7 306 1 1091 213 139 32 chr9 21119162 21119346 -96743281 + MER2 DNA MER2_type 112 344 0 290 317 77 0 chr9 21119396 21119500 -96743127 + MIR SINE MIR 22 133 -129 * 293 247 65 0 chr9 21119484 21119561 -96743066 + L2 LINE L2 3232 3313 0 1377 219 38 19 chr9 21120124 21120582 -96742045 + MLT1H LTR MaLR 1 549 0 324 304 94 7 chr9 21120807 21120945 -96741682 - MIR3 SINE MIR -9 199 50 236 233 17 33 chr9 21120977 21121037 -96741590 + MIR SINE MIR 36 94 -114 7560 87 21 3 chr9 21121129 21122916 -96739711 - L1PA7 LINE L1 -3 6466 4660 23 33 0 0 chr9 21122937 21122967 -96739660 + AT_rich Low_complexity Low_complexity 1 30 0 44005 32 21 1 chr9 21122967 21128997 -96733630 - L1PA2 LINE L1 0 6155 3 22567 119 38 20 chr9 21128999 21132395 -96730232 - L1PA7 LINE L1 -1785 4676 1131 2225 114 3 0 chr9 21132395 21132703 -96729924 - AluY SINE Alu -2 309 1 22567 119 38 20 chr9 21132703 21133855 -96728772 - L1PA7 LINE L1 -5330 1131 1 294 96 19 39 chr9 21133889 21133941 -96728686 + L2 LINE L2 3262 3312 -1 200 59 29 0 chr9 21134591 21134625 -96728002 + (GA)n Simple_repeat Simple_repeat 2 36 0 235 253 107 0 chr9 21135109 21135184 -96727443 + MIR SINE MIR 47 129 -133 2603 221 13 63 chr9 21136041 21136662 -96725965 + MLT1G LTR MaLR 1 590 0 340 164 0 0 chr9 21136740 21136807 -96725820 - L1MA4 LINE L1 -5 6295 6229 1792 135 53 3 chr9 21137613 21137916 -96724711 - L1MA4A LINE L1 0 6303 5986 187 278 189 0 chr9 21140381 21140471 -96722156 + MIR3 SINE MIR 4 110 -98 1492 129 27 99 chr9 21140725 21141059 -96721568 + MLT1B LTR MaLR 21 330 -60 1393 135 5 0 chr9 21141081 21141288 -96721339 - MER2 DNA MER2_type -135 210 3 799 268 158 17 chr9 21141289 21141644 -96720983 + MLT1J LTR MaLR 35 439 -72 316 231 26 0 chr9 21141934 21142012 -96720615 + MLT1J LTR MaLR 429 508 -3 2108 116 21 0 chr9 21142433 21142718 -96719909 + AluSq SINE Alu 5 295 -18 265 246 224 22 chr9 21143767 21143901 -96718726 - MIR3 SINE MIR -15 193 33 1765 204 165 9 chr9 21144055 21144492 -96718135 + LTR22 LTR ERVK 1 505 -4 1653 144 65 38 chr9 21144577 21144869 -96717758 - AluJb SINE Alu -12 300 1 283 260 27 0 chr9 21145817 21145890 -96716737 + MIR SINE MIR 170 244 -18 1029 206 37 124 chr9 21147040 21147464 -96715163 + MLT1B LTR MaLR 1 390 0 180 0 0 0 chr9 21147664 21147684 -96714943 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 291 28 0 0 chr9 21147683 21147719 -96714908 + (GA)n Simple_repeat Simple_repeat 2 37 0 1978 123 0 14 chr9 21147719 21147996 -96714631 - AluSx SINE Alu -39 273 1 2198 89 17 7 chr9 21148203 21148496 -96714131 - AluSg SINE Alu -14 296 1 1575 199 3 7 chr9 21149599 21149890 -96712737 + AluJo SINE Alu 11 300 -12 495 118 0 0 chr9 21150562 21150638 -96711989 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 1606 163 11 21 chr9 21150641 21150924 -96711703 - AluJb SINE Alu -32 280 1 204 167 0 0 chr9 21151283 21151331 -96711296 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 11592 36 8 0 chr9 21151789 21153883 -96708744 + L1PA5 LINE L1 4050 6149 -5 2560 53 3 0 chr9 21154031 21154331 -96708296 + AluY SINE Alu 1 301 -10 23 54 0 0 chr9 21154439 21154476 -96708151 + AT_rich Low_complexity Low_complexity 1 37 0 869 250 102 0 chr9 21155247 21155463 -96707164 - MIR SINE MIR 0 262 25 452 232 72 14 chr9 21155693 21155831 -96706796 - L1MC4a LINE L1 -1850 5958 5813 1045 198 50 5 chr9 21155873 21156075 -96706552 - MER58C DNA MER1_type -1 214 4 180 308 77 11 chr9 21156149 21156240 -96706387 + L2 LINE L2 2688 2784 -530 511 315 152 32 chr9 21156268 21156925 -96705702 + L2 LINE L2 2538 3271 -1 262 330 91 35 chr9 21156966 21157163 -96705464 + L2 LINE L2 2840 3047 -225 488 271 0 45 chr9 21157425 21157558 -96705069 - MIR SINE MIR -43 219 93 183 313 73 73 chr9 21158276 21158297 -96704330 - MER5A DNA MER1_type -1 188 168 570 228 144 18 chr9 21158297 21158464 -96704163 + MER5A DNA MER1_type 2 189 0 183 313 73 73 chr9 21158464 21158592 -96704035 - MER5A DNA MER1_type -20 169 39 553 252 38 97 chr9 21158640 21158756 -96703871 + MIR SINE MIR 37 158 -104 2124 82 58 24 chr9 21158756 21159049 -96703578 + AluSx SINE Alu 3 305 -7 553 252 38 97 chr9 21159049 21159104 -96703523 + MIR SINE MIR 158 193 -69 1941 149 174 14 chr9 21159104 21159472 -96703155 + MSTA LTR MaLR 1 427 -1 553 252 38 97 chr9 21159472 21159537 -96703090 + MIR SINE MIR 193 260 -2 402 333 38 21 chr9 21159713 21159899 -96702728 - MER5A DNA MER1_type 0 189 1 405 0 0 0 chr9 21160252 21160297 -96702330 + (CA)n Simple_repeat Simple_repeat 2 46 0 231 36 0 0 chr9 21160296 21160324 -96702303 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 284 328 25 8 chr9 21160759 21160878 -96701749 + MIR3 SINE MIR 51 171 -37 510 194 7 211 chr9 21161128 21161417 -96701210 + MIR SINE MIR 7 236 -26 342 289 54 13 chr9 21162668 21162817 -96699810 - L1ME4a LINE L1 -3 6118 5964 497 92 5 0 chr9 21164240 21164308 -96698319 + Tigger4(Zombi) DNA MER2_type 268 2731 0 2999 134 6 27 chr9 21164493 21164587 -96698040 + L1PB1 LINE L1 5686 5780 -371 217 68 45 0 chr9 21164587 21164631 -96697996 + (TA)n Simple_repeat Simple_repeat 1 46 0 2999 134 6 27 chr9 21164631 21165012 -96697615 + L1PB1 LINE L1 5780 6151 0 216 271 0 75 chr9 21165921 21166028 -96696599 + GA-rich Low_complexity Low_complexity 2 100 0 387 312 0 44 chr9 21167436 21167602 -96695025 + MIR3 SINE MIR 11 170 -38 267 383 19 0 chr9 21168197 21168351 -96694276 + MIR SINE MIR 96 252 -10 1159 244 101 40 chr9 21169546 21170296 -96692331 + L2 LINE L2 2449 3256 -57 294 129 0 0 chr9 21171040 21171102 -96691525 + (A)n Simple_repeat Simple_repeat 1 62 0 242 319 33 33 chr9 21171102 21171193 -96691434 - L2 LINE L2 -48 3224 3134 602 25 25 0 chr9 21171393 21171472 -96691155 - L1HS LINE L1 -2 6153 6073 27 49 0 0 chr9 21171472 21171513 -96691114 + AT_rich Low_complexity Low_complexity 1 41 0 1914 235 60 5 chr9 21171920 21172441 -96690186 - L1MC4a LINE L1 -721 7087 6604 199 189 0 38 chr9 21173928 21173981 -96688646 + L2 LINE L2 3261 3311 -2 255 61 0 0 chr9 21174928 21174961 -96687666 + (T)n Simple_repeat Simple_repeat 1 33 0 2148 120 0 0 chr9 21175445 21175737 -96686890 + AluSx SINE Alu 1 292 -20 1070 273 23 48 chr9 21175748 21176140 -96686487 + L1MC4a LINE L1 5517 5898 -1910 367 243 75 9 chr9 21176691 21176798 -96685829 - L3 LINE CR1 -126 1451 1338 685 274 162 76 chr9 21177086 21177714 -96684913 + L2 LINE L2 290 971 -2343 1153 233 114 18 chr9 21177714 21178101 -96684526 + L2 LINE L2 1982 2405 -909 1300 237 68 70 chr9 21178140 21178643 -96683984 + MLT1J LTR MaLR 7 508 -3 738 53 0 0 chr9 21179233 21179328 -96683299 + (CCTA)n Simple_repeat Simple_repeat 4 98 0 200 300 114 0 chr9 21179742 21179812 -96682815 + L2 LINE L2 3192 3269 -3 339 315 165 15 chr9 21179917 21180117 -96682510 + L2 LINE L2 3043 3272 0 302 328 16 16 chr9 21180514 21180636 -96681991 + MIR SINE MIR 20 141 -121 249 397 41 26 chr9 21180941 21181135 -96681492 + L2 LINE L2 3073 3269 -3 204 67 0 0 chr9 21181244 21181274 -96681353 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 413 214 101 75 chr9 21181868 21182027 -96680600 - MER103 DNA DNA -1 165 3 22 0 0 0 chr9 21183156 21183178 -96679449 + AT_rich Low_complexity Low_complexity 1 22 0 839 245 0 5 chr9 21233430 21233626 -96629001 + Charlie1 DNA MER1_type 33 227 -2534 651 185 7 15 chr9 21233626 21233761 -96628866 + Charlie1 DNA MER1_type 2628 2761 0 414 244 41 8 chr9 21234507 21234630 -96627997 + MER3 DNA MER1_type 79 205 -4 880 276 180 36 chr9 21234893 21235073 -96627554 + L2 LINE L2 2804 2957 -356 1128 202 28 0 chr9 21235073 21235286 -96627341 - MER20 DNA MER1_type 0 219 1 880 276 180 36 chr9 21235286 21235550 -96627077 + L2 LINE L2 2957 3312 -1 22 0 0 0 chr9 21235764 21235786 -96626841 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr9 21236746 21236780 -96625847 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 842 259 12 8 chr9 21236962 21237209 -96625418 - L1MA9 LINE L1 -40 6272 6025 328 260 150 0 chr9 21238671 21238771 -96623856 - L2 LINE L2 -5 3308 3194 2329 100 0 0 chr9 21240293 21240593 -96622034 - AluSg SINE Alu -10 300 1 1973 141 0 34 chr9 21240603 21240923 -96621704 - AluJb SINE Alu -3 309 1 322 89 0 0 chr9 21242406 21242451 -96620176 - MADE1 DNA Mariner 0 80 36 28 48 0 0 chr9 21242513 21242555 -96620072 + AT_rich Low_complexity Low_complexity 1 42 0 405 0 0 0 chr9 21243151 21243196 -96619431 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 21245717 21245738 -96616889 + AT_rich Low_complexity Low_complexity 1 21 0 710 224 120 11 chr9 21247392 21247575 -96615052 + MER20 DNA MER1_type 17 219 0 719 257 18 27 chr9 21249710 21249932 -96612695 + L2 LINE L2 3094 3313 0 297 139 0 0 chr9 21250415 21250458 -96612169 - tRNA-Arg-CGC tRNA tRNA -32 44 2 5729 120 34 11 chr9 21251389 21252328 -96610299 + L1MA5A LINE L1 5332 6292 -5 183 184 0 0 chr9 21252427 21252465 -96610162 + L2 LINE L2 2995 3032 -281 262 238 68 0 chr9 21252561 21252643 -96609984 + L1ME LINE L1 5564 5637 -484 21 57 0 0 chr9 21252666 21252701 -96609926 + AT_rich Low_complexity Low_complexity 1 35 0 246 279 124 53 chr9 21252720 21252946 -96609681 + L1ME LINE L1 5669 5910 -211 328 311 215 19 chr9 21253480 21253626 -96609001 + MIR SINE MIR 4 120 -142 1315 173 108 54 chr9 21253626 21253809 -96608818 + MLT1B LTR MaLR 1 173 -217 216 0 0 0 chr9 21253809 21253833 -96608794 + (TC)n Simple_repeat Simple_repeat 1 24 0 309 51 0 0 chr9 21253834 21253873 -96608754 + (TG)n Simple_repeat Simple_repeat 1 39 0 1315 173 108 54 chr9 21253873 21254057 -96608570 + MLT1B LTR MaLR 172 390 0 328 311 215 19 chr9 21254057 21254119 -96608508 + MIR SINE MIR 120 253 -9 254 188 179 36 chr9 21254268 21254380 -96608247 + MIR SINE MIR 132 259 -3 21 0 0 0 chr9 21254775 21254796 -96607831 + AT_rich Low_complexity Low_complexity 1 21 0 529 159 28 0 chr9 21254796 21254903 -96607724 - L1MA7 LINE L1 -1 6290 6181 707 267 149 4 chr9 21256106 21256361 -96606266 - L2 LINE L2 -9 3304 3013 5730 31 7 0 chr9 21256419 21257119 -96605508 - L1PA4 LINE L1 -1207 4939 4235 7359 30 11 1 chr9 21257119 21258336 -96604291 + L1PA4 LINE L1 4930 6155 0 932 266 96 34 chr9 21258338 21258877 -96603750 + L1ME2 LINE L1 1918 2481 -3734 1661 178 0 43 chr9 21258877 21259180 -96603447 + AluJo SINE Alu 1 290 -22 932 266 96 34 chr9 21259180 21259403 -96603224 + L1ME2 LINE L1 2481 2689 -3526 1351 220 67 22 chr9 21259478 21259882 -96602745 - Zaphod DNA AcHobo -15 4016 3595 * 2457 231 74 48 chr9 21259880 21260800 -96601827 - Zaphod DNA AcHobo -3041 990 47 1807 238 65 97 chr9 21260804 21261157 -96601470 + L1ME2 LINE L1 4197 4560 -1655 2045 119 0 0 chr9 21261157 21261434 -96601193 + AluSg SINE Alu 1 277 -33 1807 238 65 97 chr9 21261434 21262284 -96600343 + L1ME2 LINE L1 4560 5361 -854 2415 233 91 39 chr9 21262287 21263034 -96599593 + L1ME2 LINE L1 5424 6224 -9 411 207 69 28 chr9 21263050 21263195 -96599432 + L1MC5 LINE L1 7785 7935 -26 746 239 225 28 chr9 21263476 21263836 -96598791 + LTR50 LTR ERVL 1 431 -364 673 210 169 0 chr9 21263827 21264046 -96598581 + LTR50 LTR ERVL 540 795 0 * 645 293 83 4 chr9 21266774 21267027 -96595600 - MER102a DNA MER1_type -4 326 54 2083 145 92 8 chr9 21267281 21267674 -96594953 + MSTB LTR MaLR 1 426 0 698 253 27 11 chr9 21267731 21267917 -96594710 + MER5A DNA MER1_type 1 189 0 220 281 32 70 chr9 21268128 21268272 -96594355 - MIR SINE MIR -95 113 16 343 176 49 29 chr9 21268284 21268386 -96594241 - L1ME4a LINE L1 -1 6120 6017 27 29 0 0 chr9 21268559 21268593 -96594034 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr9 21269448 21269478 -96593149 + AT_rich Low_complexity Low_complexity 1 30 0 588 211 111 64 chr9 21269719 21269890 -96592737 + MIR SINE MIR 80 258 -4 574 283 61 24 chr9 21270116 21270328 -96592299 - MIR SINE MIR -20 242 23 219 103 0 0 chr9 21270996 21271035 -96591592 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 315 285 209 19 chr9 21271148 21271306 -96591321 + L3b LINE CR1 1274 1461 -122 240 49 73 49 chr9 21271742 21271783 -96590844 - MER110A LTR ERV1 -4 464 423 789 177 50 6 chr9 21271917 21272098 -96590529 + MER53 DNA DNA 1 189 0 182 243 149 65 chr9 21272436 21272543 -96590084 - L2 LINE L2 -840 2474 2359 392 323 115 71 chr9 21272600 21273478 -96589149 + L2 LINE L2 2295 3214 -58 491 279 32 37 chr9 21273488 21273678 -96588949 - MIR SINE MIR 0 262 74 352 235 37 96 chr9 21273682 21273869 -96588758 + MER5B DNA MER1_type 3 178 0 379 282 24 29 chr9 21274818 21274988 -96587639 + MIR SINE MIR 23 191 -71 739 241 6 11 chr9 21275046 21275220 -96587407 - MIR SINE MIR -56 206 34 235 254 60 15 chr9 21276841 21276908 -96585719 + LTR67 LTR ERVL 125 194 -363 22 0 0 0 chr9 21276965 21276987 -96585640 + AT_rich Low_complexity Low_complexity 1 22 0 286 293 85 27 chr9 21277144 21277332 -96585295 + LTR67 LTR ERVL 359 557 0 585 282 206 0 chr9 21277387 21277596 -96585031 + MIR SINE MIR 8 259 -3 611 178 7 44 chr9 21278796 21278931 -96583696 - MLT1E3 LTR MaLR 0 624 495 843 182 18 18 chr9 21279223 21279393 -96583234 - FRAM SINE Alu -6 170 1 2661 142 25 14 chr9 21280007 21280445 -96582182 + MSTB2 LTR MaLR 15 457 0 485 280 42 0 chr9 21281977 21282095 -96580532 - L2 LINE L2 -2 3311 3189 790 260 100 11 chr9 21282406 21282687 -96579940 + L2 LINE L2 1387 1692 -1622 3171 76 5 5 chr9 21282688 21283121 -96579506 - L1PA7 LINE L1 -1 6153 5721 1906 100 4 0 chr9 21283121 21283392 -96579235 + L1PA5 LINE L1 5881 6152 -2 28476 102 13 50 chr9 21283404 21283778 -96578849 - L1P3 LINE L1 -423 5731 5345 251 28 28 0 chr9 21283778 21283814 -96578813 + (TTTTA)n Simple_repeat Simple_repeat 4 40 0 5120 40 3 2 chr9 21283814 21284433 -96578194 - L1PA4 LINE L1 -13 6142 5523 28476 102 13 50 chr9 21284433 21290079 -96572548 - L1P3 LINE L1 -807 5347 10 2526 144 67 2 chr9 21290133 21290535 -96572092 - MSTC LTR MaLR 0 428 1 3879 161 76 5 chr9 21293041 21293951 -96568676 + L1MB7 LINE L1 5204 6184 0 488 262 14 7 chr9 21294834 21294975 -96567652 - MIR SINE MIR -48 214 73 327 237 132 9 chr9 21295538 21295652 -96566975 - MIR3 SINE MIR -4 204 77 701 317 5 20 chr9 21296301 21296500 -96566127 - MER91A DNA MER1_type 0 196 1 347 274 70 43 chr9 21296545 21296775 -96565852 - MER112 DNA MER1_type -24 236 1 283 329 60 13 chr9 21296874 21297023 -96565604 + MIR SINE MIR 23 178 -84 189 0 0 0 chr9 21297648 21297669 -96564958 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 229 257 294 5 chr9 21297992 21298206 -96564421 + L1ME4a LINE L1 5591 5866 -255 306 274 42 71 chr9 21298325 21298493 -96564134 + L1ME4a LINE L1 5935 6097 -24 1101 246 111 73 chr9 21299024 21299832 -96562795 + L1MEd LINE L1 418 1256 -4949 560 334 73 14 chr9 21299834 21300178 -96562449 + L1MEd LINE L1 1329 1692 -4704 2198 73 3 22 chr9 21300388 21300702 -96561925 + AluY SINE Alu 4 311 0 2285 99 0 3 chr9 21300871 21301174 -96561453 - AluSg SINE Alu -8 302 1 299 264 84 30 chr9 21301363 21301399 -96561228 + L1MEd LINE L1 2059 2092 -4123 2170 58 47 0 chr9 21301399 21301675 -96560952 + AluY SINE Alu 14 302 -9 299 264 84 30 chr9 21301675 21301968 -96560659 + L1MEd LINE L1 2092 2360 -3855 261 368 0 0 chr9 21302091 21302178 -96560449 + GA-rich Low_complexity Low_complexity 2 88 0 484 296 30 18 chr9 21303486 21303655 -96558972 - MIR SINE MIR -7 255 85 721 211 46 0 chr9 21307892 21308044 -96554583 + MIR SINE MIR 79 237 -25 21 0 0 0 chr9 21308503 21308524 -96554103 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr9 21309692 21309721 -96552906 + GC_rich Low_complexity Low_complexity 1 29 0 582 182 8 16 chr9 21310879 21311000 -96551627 - FLAM_A SINE Alu -5 137 18 729 154 62 20 chr9 21311017 21311212 -96551415 - L1MC5 LINE L1 -30 7931 7729 745 176 16 132 chr9 21311213 21311532 -96551095 + L1MC5 LINE L1 6815 7096 -865 225 203 0 0 chr9 21311637 21311696 -96550931 - L1M4 LINE L1 -1072 5074 5016 541 277 97 76 chr9 21311837 21312260 -96550367 - MLT1J LTR MaLR -58 453 22 2029 99 13 56 chr9 21313198 21313500 -96549127 + AluSq SINE Alu 5 293 -20 274 283 168 9 chr9 21313780 21313893 -96548734 + L2 LINE L2 3141 3271 -1 1126 281 76 13 chr9 21313929 21314310 -96548317 - MLT1I LTR MaLR -4 405 1 421 174 248 0 chr9 21314406 21314515 -96548112 - MIR SINE MIR -106 156 21 1584 115 91 35 chr9 21315104 21315391 -96547236 + L1PA15 LINE L1 5863 6165 0 21 0 0 0 chr9 21315656 21315677 -96546950 + AT_rich Low_complexity Low_complexity 1 21 0 187 179 0 89 chr9 21316256 21316312 -96546315 - L3 LINE CR1 -206 1371 1321 352 265 52 80 chr9 21316353 21316612 -96546015 - HAL1 LINE L1 -140 2367 2117 3807 20 9 2 chr9 21316612 21317062 -96545565 + L1PA4 LINE L1 5703 6155 0 352 265 52 80 chr9 21317062 21317126 -96545501 - HAL1 LINE L1 -390 2117 2053 2177 259 74 72 chr9 21317215 21318703 -96543924 - HAL1 LINE L1 -698 1809 319 505 185 50 17 chr9 21318715 21318834 -96543793 - MLT1E2 LTR MaLR -2 624 502 369 250 109 0 chr9 21319234 21319362 -96543265 - HAL1b LINE L1 -690 658 517 261 0 0 0 chr9 21319380 21319409 -96543218 + (CA)n Simple_repeat Simple_repeat 1 29 0 456 294 153 64 chr9 21319409 21319848 -96542779 - HAL1b LINE L1 -867 481 4 1076 219 100 9 chr9 21320610 21320930 -96541697 - MLT1C LTR MaLR -2 465 117 239 291 110 0 chr9 21321447 21321574 -96541053 - L1ME LINE L1 -302 5819 5679 6337 65 0 0 chr9 21321818 21322598 -96540029 - LTR17 LTR ERV1 0 780 1 2036 184 11 8 chr9 21323578 21323942 -96538685 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr9 21324296 21324320 -96538307 + AT_rich Low_complexity Low_complexity 1 24 0 283 167 39 0 chr9 21324647 21324725 -96537902 - L1MB7 LINE L1 -4 6180 6100 2642 216 47 54 chr9 21324836 21325730 -96536897 - L1M4 LINE L1 -1425 4721 3834 566 355 59 17 chr9 21325979 21326269 -96536358 - L3 LINE CR1 -826 751 450 374 276 95 0 chr9 21326300 21326405 -96536222 + L2 LINE L2 3199 3313 0 192 273 0 18 chr9 21326446 21326501 -96536126 - L3 LINE CR1 -1194 383 330 419 243 95 14 chr9 21326563 21326711 -96535916 - MER69A DNA AcHobo -7 170 11 25 0 0 0 chr9 21326887 21326912 -96535715 + AT_rich Low_complexity Low_complexity 1 25 0 198 269 129 86 chr9 21326990 21327083 -96535544 + MIR3 SINE MIR 6 102 -106 2103 171 79 46 chr9 21327088 21327645 -96534982 - LTR24B LTR ERV1 -17 593 1 210 340 53 11 chr9 21327646 21327740 -96534887 + MIR3 SINE MIR 96 193 -15 3645 109 71 12 chr9 21330205 21330783 -96531844 + LTR9 LTR ERV1 1 612 0 28 61 0 0 chr9 21331648 21331697 -96530930 + AT_rich Low_complexity Low_complexity 1 49 0 1356 177 105 15 chr9 21331809 21332143 -96530484 + MLT1A1 LTR MaLR 2 365 0 396 240 101 16 chr9 21332199 21332328 -96530299 - L1ME LINE L1 -4129 2132 1993 352 204 37 75 chr9 21332328 21332408 -96530219 - AluS SINE Alu -248 60 1 701 306 24 0 chr9 21332637 21332928 -96529699 - L1ME LINE L1 -4604 1657 1360 350 276 71 47 chr9 21332991 21333343 -96529284 - L1ME LINE L1 -4905 1165 802 2015 149 17 3 chr9 21334099 21334400 -96528227 - AluSx SINE Alu -7 305 1 2063 153 14 14 chr9 21334428 21334793 -96527834 + MLT1A1 LTR MaLR 1 365 0 344 296 74 40 chr9 21334919 21335095 -96527532 - MLT1J LTR MaLR -327 184 3 198 0 0 0 chr9 21336740 21336762 -96525865 + (T)n Simple_repeat Simple_repeat 1 22 0 652 310 132 4 chr9 21336970 21337212 -96525415 - MLT1J2 LTR MaLR -108 342 70 2820 130 12 0 chr9 21337293 21337716 -96524911 - MSTA LTR MaLR 0 428 1 195 259 56 0 chr9 21337742 21337796 -96524831 + L2 LINE L2 3257 3313 0 37 86 0 0 chr9 21338241 21338334 -96524293 + AT_rich Low_complexity Low_complexity 1 93 0 1556 158 13 76 chr9 21338506 21338822 -96523805 - AluJo SINE Alu -10 302 7 5807 161 13 12 chr9 21339188 21340774 -96521853 + L1PB1 LINE L1 4195 5794 -357 663 78 0 0 chr9 21340774 21340864 -96521763 + (TA)n Simple_repeat Simple_repeat 1 90 0 5807 161 13 12 chr9 21340864 21341222 -96521405 + L1PB1 LINE L1 5794 6150 -1 26 0 0 0 chr9 21341222 21341248 -96521379 + AT_rich Low_complexity Low_complexity 1 26 0 391 100 0 0 chr9 21341248 21341308 -96521319 + L1PB1 LINE L1 6090 6149 -2 194 0 39 0 chr9 21341316 21341342 -96521285 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 273 169 0 0 chr9 21341461 21341520 -96521107 + (TG)n Simple_repeat Simple_repeat 2 60 0 359 286 36 24 chr9 21343712 21343880 -96518747 + LTR16B LTR ERVL 289 458 -6 838 186 158 24 chr9 21343983 21344078 -96518549 - L1MC4 LINE L1 0 8042 7961 279 0 0 0 chr9 21344078 21344109 -96518518 + (TG)n Simple_repeat Simple_repeat 2 32 0 838 186 158 24 chr9 21344109 21344260 -96518367 - L1MC4 LINE L1 -81 7961 7763 1111 128 0 0 chr9 21344262 21344441 -96518186 + AluSc SINE Alu 134 312 0 7095 62 7 0 chr9 21344478 21345966 -96516661 + L1PA8 LINE L1 4667 6159 -13 241 182 162 20 chr9 21345967 21346066 -96516561 - L1MC4 LINE L1 -265 7777 7665 187 163 0 102 chr9 21346102 21346151 -96516476 - L2 LINE L2 -8 3305 3262 22 0 0 0 chr9 21346586 21346608 -96516019 + AT_rich Low_complexity Low_complexity 1 22 0 1313 210 10 86 chr9 21347213 21347608 -96515019 - MLT1A1 LTR MaLR 0 365 1 27 29 0 0 chr9 21348268 21348302 -96514325 + AT_rich Low_complexity Low_complexity 1 34 0 267 196 0 0 chr9 21348311 21348367 -96514260 + HsTC2 DNA Tc2 1 56 -1842 1238 165 11 36 chr9 21348941 21349236 -96513391 + L1MA4 LINE L1 6030 6305 0 272 306 12 0 chr9 21350135 21350220 -96512407 + MIR SINE MIR 165 250 -12 279 0 0 0 chr9 21350446 21350477 -96512150 + (CA)n Simple_repeat Simple_repeat 2 32 0 515 280 13 25 chr9 21350996 21351153 -96511474 - MIR SINE MIR -30 232 78 1496 172 7 123 chr9 21351445 21351858 -96510769 - MLT1A1 LTR MaLR 0 365 1 4278 33 5 1 chr9 21353109 21353758 -96508869 + L1P2 LINE L1 4874 5526 -629 * 41734 42 1 52 chr9 21353732 21357806 -96504821 + L1P2 LINE L1 7 4289 -1866 2928 13 0 0 chr9 21357806 21358124 -96504503 + AluYb8 SINE Alu 1 318 0 41734 42 1 52 chr9 21358124 21359090 -96503537 + L1P2 LINE L1 4289 5303 -852 288 0 0 0 chr9 21359090 21359122 -96503505 + (CA)n Simple_repeat Simple_repeat 1 32 0 1205 128 0 6 chr9 21359123 21359295 -96503332 + AluSg/x SINE Alu 133 303 -9 41734 42 1 52 chr9 21359295 21359975 -96502652 + L1P2 LINE L1 5302 5590 -565 1412 203 87 6 chr9 21360376 21360697 -96501930 + MER7A DNA MER2_type 2 346 0 1528 201 117 17 chr9 21361264 21361667 -96500960 - L1ME2 LINE L1 -9 6155 5713 1141 279 120 3 chr9 21361730 21362096 -96500531 - L2 LINE L2 -3 3310 2902 708 199 44 16 chr9 21362176 21362351 -96500276 + LTR41 LTR ERVL 3 181 -614 3692 289 26 3 chr9 21362351 21363368 -96499259 + ERVL LTR ERVL 3972 5012 -752 1978 120 0 37 chr9 21363854 21364154 -96498473 + AluSq SINE Alu 1 289 -24 5770 117 11 7 chr9 21364160 21366139 -96496488 - L1PA16 LINE L1 -9 6860 4867 3716 230 25 9 chr9 21366141 21367332 -96495295 - L1PA16 LINE L1 -2908 3941 2733 1754 164 17 7 chr9 21367380 21367667 -96494960 + AluJb SINE Alu 1 290 -22 301 336 107 15 chr9 21368971 21369102 -96493525 + MIR SINE MIR 49 191 -71 189 220 153 59 chr9 21369553 21369671 -96492956 - L2 LINE L2 -17 3296 3168 21 36 0 0 chr9 21370001 21370029 -96492598 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr9 21370781 21370805 -96491822 + AT_rich Low_complexity Low_complexity 1 24 0 1891 216 70 17 chr9 21371086 21371568 -96491059 - L1MB8 LINE L1 0 6178 5671 717 73 0 0 chr9 21371568 21371664 -96490963 + (TA)n Simple_repeat Simple_repeat 2 97 0 2029 135 14 3 chr9 21371664 21371960 -96490667 - AluSq SINE Alu -14 299 1 25194 156 16 14 chr9 21371981 21377580 -96485047 - L1PA10 LINE L1 -15 6468 818 1568 235 64 43 chr9 21377664 21378103 -96484524 - MLT1D LTR MaLR -57 448 1 1357 205 35 55 chr9 21378103 21378538 -96484089 - L1PA15 LINE L1 -1599 5045 4620 5524 135 8 4 chr9 21378538 21380151 -96482476 + L1PA15 LINE L1 5039 6660 -3 20698 148 25 14 chr9 21380154 21387261 -96475366 + L1MA2 LINE L1 15 7339 -384 1744 44 5 0 chr9 21387261 21387466 -96475161 - AluY SINE Alu -1 310 105 20698 148 25 14 chr9 21387466 21387856 -96474771 + L1MA2 LINE L1 7339 7723 0 2912 238 64 50 chr9 21387896 21388263 -96474364 - L1MEc LINE L1 -2576 4068 3708 2271 97 0 3 chr9 21388263 21388573 -96474054 + AluSc SINE Alu 1 309 0 2912 238 64 50 chr9 21388573 21389620 -96473007 - L1MEc LINE L1 -2936 3708 2631 1801 179 3 0 chr9 21389620 21389916 -96472711 - AluJo SINE Alu -15 297 1 2912 238 64 50 chr9 21389916 21389941 -96472686 - L1MEc LINE L1 -4013 2631 2608 290 251 21 7 chr9 21389960 21390093 -96472534 - L1MDa LINE L1 -4711 1829 1688 637 293 78 25 chr9 21390165 21390650 -96471977 - L1MEc LINE L1 -4271 2554 2044 4473 158 46 6 chr9 21390657 21391756 -96470871 - L1MB7 LINE L1 -21 6163 5016 602 255 81 23 chr9 21391751 21392010 -96470617 - L1MEc LINE L1 -4737 1909 1636 * 425 231 0 40 chr9 21392055 21392228 -96470399 - L1MEc LINE L1 -5083 1459 1294 264 147 40 27 chr9 21393847 21393922 -96468705 + CT-rich Low_complexity Low_complexity 4 79 0 729 100 16 68 chr9 21393923 21394113 -96468514 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 207 200 27 27 chr9 21394113 21394188 -96468439 + CT-rich Low_complexity Low_complexity 4 78 0 1652 116 0 0 chr9 21394626 21394851 -96467776 - AluSg/x SINE Alu 0 312 88 189 0 0 0 chr9 21395555 21395576 -96467051 + (A)n Simple_repeat Simple_repeat 1 21 0 261 339 43 25 chr9 21395942 21396337 -96466290 - Charlie4 DNA MER1_type -1126 835 434 360 64 0 0 chr9 21396924 21396971 -96465656 + (TG)n Simple_repeat Simple_repeat 1 47 0 2178 116 151 5 chr9 21399116 21399488 -96463139 + MSTA LTR MaLR 3 428 0 826 284 168 11 chr9 21401153 21401505 -96461122 - L2 LINE L2 -683 2631 2225 781 253 76 4 chr9 21401512 21401737 -96460890 + MIR SINE MIR 4 244 -18 838 314 95 6 chr9 21401764 21402102 -96460525 - L2 LINE L2 -1093 2221 1854 621 293 105 23 chr9 21402511 21402948 -96459679 - L1ME4a LINE L1 -232 5889 5417 274 179 15 172 chr9 21404117 21404195 -96458432 + MIR3 SINE MIR 82 132 -76 2080 71 0 0 chr9 21404195 21404450 -96458177 - AluY SINE Alu -18 293 39 274 179 15 172 chr9 21404450 21404505 -96458122 + MIR3 SINE MIR 132 194 -14 303 183 146 0 chr9 21404586 21404668 -96457959 + L2 LINE L2 2128 2221 -1093 2289 137 8 3 chr9 21405230 21405594 -96457033 + MER47A DNA MER2_type 1 366 0 295 182 91 45 chr9 21406085 21406173 -96456454 - MIR SINE MIR -75 187 96 3858 202 16 56 chr9 21406219 21407075 -96455552 - L1PA13 LINE L1 -5 6158 5337 5865 75 12 0 chr9 21407075 21407875 -96454752 + L1PA10 LINE L1 5344 6153 -15 977 155 21 0 chr9 21407875 21408062 -96454565 - L1PA14 LINE L1 -791 5355 5165 * 2255 120 67 4 chr9 21408061 21408799 -96453828 + L1PA14 LINE L1 5335 6146 -5 909 248 126 39 chr9 21409496 21409932 -96452695 - MLT2F LTR ERVL -189 474 1 180 0 0 0 chr9 21410039 21410059 -96452568 + (TTA)n Simple_repeat Simple_repeat 3 22 0 957 337 140 14 chr9 21410237 21410866 -96451761 + L2 LINE L2 476 1183 -2131 485 254 26 62 chr9 21410866 21411059 -96451568 - MLT1F LTR MaLR -356 186 1 632 280 156 21 chr9 21411059 21411341 -96451286 + L2 LINE L2 1888 2207 -1107 733 120 10 0 chr9 21411370 21411470 -96451157 - FLAM_A SINE Alu -32 110 10 1081 305 110 19 chr9 21411471 21412009 -96450618 + L2 LINE L2 2199 2785 -529 994 159 137 13 chr9 21412038 21412265 -96450362 - MSTB LTR MaLR -4 428 174 1024 160 0 0 chr9 21412272 21412422 -96450205 + FRAM SINE Alu 5 154 -22 1008 151 11 27 chr9 21412439 21412625 -96450002 - MSTB LTR MaLR -241 185 3 764 351 20 44 chr9 21412682 21413177 -96449450 + L2 LINE L2 2824 3306 -7 370 202 39 48 chr9 21413411 21413515 -96449112 - MIR SINE MIR -123 139 37 379 245 31 75 chr9 21414210 21414369 -96448258 - MIR SINE MIR -27 235 84 340 161 69 35 chr9 21414375 21414462 -96448165 - MLT1J LTR MaLR -1 510 421 1015 270 60 3 chr9 21414506 21414825 -96447802 - MLT1J LTR MaLR -166 345 9 227 310 0 0 chr9 21415191 21415249 -96447378 + L2 LINE L2 3215 3272 0 252 86 0 0 chr9 21416195 21416230 -96446397 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 682 265 0 41 chr9 21417190 21417386 -96445241 - MIR SINE MIR -65 197 10 403 300 38 25 chr9 21417391 21417551 -96445076 + MIR SINE MIR 63 224 -38 24 0 0 0 chr9 21418157 21418181 -96444446 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 21418272 21418307 -96444320 + AT_rich Low_complexity Low_complexity 1 35 0 431 257 88 58 chr9 21418334 21418548 -96444079 - MIR SINE MIR -44 218 5 656 305 43 30 chr9 21418619 21418947 -96443680 - MLT2E LTR ERVL 0 628 297 2561 72 0 0 chr9 21419129 21419436 -96443191 + AluY SINE Alu 1 307 -4 692 363 67 3 chr9 21419513 21419902 -96442725 - LTR67 LTR ERVL -35 522 109 2453 91 40 43 chr9 21420287 21420662 -96441965 - THE1C LTR MaLR -1 374 1 328 302 0 19 chr9 21420948 21421054 -96441573 - LTR67 LTR ERVL -452 105 2 483 347 32 18 chr9 21421143 21421362 -96441265 + MIR SINE MIR 29 250 -12 249 345 117 81 chr9 21421766 21422008 -96440619 - L2 LINE L2 -11 3261 3004 4605 133 22 82 chr9 21422008 21422990 -96439637 - MER49 LTR ERV1 0 923 1 249 345 117 81 chr9 21422990 21423054 -96439573 - L2 LINE L2 -268 3004 2944 1273 204 39 74 chr9 21423819 21424182 -96438445 - MLT1A2 LTR MaLR -24 350 1 502 178 50 0 chr9 21424782 21424883 -96437744 + MER5A DNA MER1_type 7 112 -77 2064 90 66 17 chr9 21426075 21426363 -96436264 - AluSp SINE Alu -11 302 1 896 254 87 52 chr9 21426397 21426547 -96436080 - MER34 LTR ERV1 -5 537 394 23479 29 10 0 chr9 21426547 21430159 -96432468 + L1PA4 LINE L1 2540 6155 0 896 254 87 52 chr9 21430159 21430524 -96432103 - MER34 LTR ERV1 -148 394 4 427 311 8 16 chr9 21430648 21430770 -96431857 - L2 LINE L2 -4 3309 3189 347 311 192 42 chr9 21430839 21431292 -96431335 + L2 LINE L2 2379 2899 -415 207 69 0 0 chr9 21431556 21431585 -96431042 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 4934 31 0 0 chr9 21431588 21432165 -96430462 - L1PA3 LINE L1 -3 6152 5576 23 33 0 0 chr9 21432669 21432699 -96429928 + AT_rich Low_complexity Low_complexity 1 30 0 298 194 28 28 chr9 21432872 21432944 -96429683 - MIR3 SINE MIR -17 191 120 643 316 62 21 chr9 21433267 21433603 -96429024 - L3 LINE CR1 -853 724 375 186 327 193 0 chr9 21433641 21433864 -96428763 + L2 LINE L2 1978 2243 -1071 243 394 10 0 chr9 21434364 21434463 -96428164 - L2 LINE L2 -25 3247 3148 318 336 71 77 chr9 21434574 21435107 -96427520 + L2 LINE L2 2324 2853 -461 215 337 90 0 chr9 21435170 21435259 -96427368 + L2 LINE L2 2940 3036 -236 241 310 103 7 chr9 21435381 21435526 -96427101 - MIR SINE MIR -66 196 38 27 49 0 0 chr9 21435580 21435621 -96427006 + AT_rich Low_complexity Low_complexity 1 41 0 3952 180 55 19 chr9 21435647 21437032 -96425595 - L1MB7 LINE L1 -51 6133 4695 745 275 55 29 chr9 21437169 21437613 -96425014 - L1ME4a LINE L1 -116 6005 5549 198 0 0 0 chr9 21437650 21437672 -96424955 + (T)n Simple_repeat Simple_repeat 1 22 0 327 251 86 17 chr9 21438029 21438204 -96424423 - L1MB7 LINE L1 -1459 4687 4501 781 335 52 57 chr9 21438391 21438809 -96423818 - L1MB7 LINE L1 -1867 4279 3865 279 0 0 0 chr9 21438809 21438840 -96423787 + (TG)n Simple_repeat Simple_repeat 2 32 0 781 335 52 57 chr9 21438840 21439119 -96423508 - L1MB7 LINE L1 -2281 3865 3586 2356 116 27 16 chr9 21440257 21440628 -96421999 - THE1C LTR MaLR 0 375 1 832 205 164 8 chr9 21441076 21441339 -96421288 - LTR16C LTR ERVL 0 491 188 850 231 77 5 chr9 21441518 21441726 -96420901 + MIR SINE MIR 13 235 -27 2299 64 24 13 chr9 21441914 21442212 -96420415 + AluY SINE Alu 1 301 -10 360 158 118 0 chr9 21443454 21443530 -96419097 + ORSL DNA AcHobo 187 271 -4 400 229 32 10 chr9 21443906 21444089 -96418538 - MLT1G1 LTR MaLR -411 179 3 1932 122 39 0 chr9 21444130 21444409 -96418218 - AluSq SINE Alu -1 312 23 183 129 0 0 chr9 21446967 21446998 -96415629 + (A)n Simple_repeat Simple_repeat 1 31 0 312 239 314 6 chr9 21447696 21447855 -96414772 + MIR SINE MIR 33 240 -22 189 0 0 0 chr9 21448255 21448276 -96414351 + (CAAAC)n Simple_repeat Simple_repeat 4 24 0 399 289 8 16 chr9 21448788 21448909 -96413718 + MIR SINE MIR 16 135 -127 318 333 26 0 chr9 21449033 21449147 -96413480 - MIR SINE MIR -40 222 106 221 293 43 115 chr9 21449158 21449366 -96413261 + L2 LINE L2 2688 2880 -434 6183 134 94 4 chr9 21449793 21450923 -96411704 + Tigger3b DNA MER2_type 1 1231 0 355 328 23 15 chr9 21451144 21451275 -96411352 - MIR3 SINE MIR -52 156 25 492 241 18 0 chr9 21451871 21451983 -96410644 - MER81 DNA DNA 0 114 1 207 140 53 18 chr9 21452127 21452184 -96410443 + T-rich Low_complexity Low_complexity 2 60 0 300 282 88 30 chr9 21452768 21452918 -96409709 - MIR3 SINE MIR -105 157 2 251 299 0 0 chr9 21452995 21453062 -96409565 - MER115 DNA AcHobo -1 692 626 330 235 0 0 chr9 21453167 21453235 -96409392 - MER115 DNA AcHobo -159 534 467 326 23 0 23 chr9 21453691 21453735 -96408892 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 2845 163 24 16 chr9 21453787 21454364 -96408263 + L1MB7 LINE L1 5584 6165 -19 271 0 51 0 chr9 21455252 21455291 -96407336 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 266 232 16 200 chr9 21455366 21455556 -96407071 + MER5A DNA MER1_type 35 189 0 1719 158 4 0 chr9 21456514 21456779 -96405848 - AluJb SINE Alu -27 285 20 256 267 9 9 chr9 21456968 21457073 -96405554 + HAL1 LINE L1 2245 2349 -158 246 296 28 9 chr9 21458794 21458902 -96403725 - L1ME LINE L1 -268 5853 5744 215 79 26 0 chr9 21459549 21459587 -96403040 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3481 137 7 7 chr9 21459866 21460451 -96402176 - MER7C DNA MER2_type -16 586 2 233 352 50 19 chr9 21460645 21460804 -96401823 - MIR SINE MIR -42 220 57 320 364 52 7 chr9 21461053 21461207 -96401420 + MIR3 SINE MIR 45 205 -3 315 0 0 0 chr9 21462207 21462242 -96400385 + (TG)n Simple_repeat Simple_repeat 1 35 0 240 35 0 0 chr9 21462241 21462270 -96400357 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 551 254 0 0 chr9 21462975 21463089 -96399538 - MIR SINE MIR -102 160 47 26 0 0 0 chr9 21463842 21463868 -96398759 + AT_rich Low_complexity Low_complexity 1 26 0 267 288 63 36 chr9 21464473 21464584 -96398043 - L2 LINE L2 -1 3312 3199 1079 130 22 0 chr9 21464641 21464826 -96397801 + L1PA16 LINE L1 5873 6061 -105 614 120 0 51 chr9 21464988 21465105 -96397522 + L1PA16 LINE L1 6056 6166 0 228 283 0 0 chr9 21465944 21465990 -96396637 + G-rich Low_complexity Low_complexity 4 49 0 351 231 238 7 chr9 21466234 21466381 -96396246 - MIR SINE MIR -24 238 58 852 79 14 14 chr9 21467998 21468138 -96394489 + (GGAA)n Simple_repeat Simple_repeat 1 140 0 2400 93 0 3 chr9 21468159 21468502 -96394125 + AluY SINE Alu 1 342 0 2298 29 43 0 chr9 21469226 21469503 -96393124 + AluY SINE Alu 1 289 -22 1995 101 0 0 chr9 21469605 21469862 -96392765 - AluSq SINE Alu -56 257 1 805 246 113 57 chr9 21470053 21470460 -96392167 + MLT1J LTR MaLR 1 430 -81 321 189 189 0 chr9 21470488 21470562 -96392065 + MER5A DNA MER1_type 14 101 -88 915 219 15 5 chr9 21470629 21470825 -96391802 + MIR SINE MIR 9 206 -56 539 248 16 16 chr9 21471155 21471284 -96391343 - L2 LINE L2 0 3313 3185 333 0 0 0 chr9 21471795 21471832 -96390795 + (TG)n Simple_repeat Simple_repeat 2 38 0 4411 221 104 50 chr9 21471847 21473821 -96388806 - L1M4 LINE L1 -919 5227 3148 1827 224 103 8 chr9 21474087 21474619 -96388008 - MER119 DNA MER1_type 0 583 1 530 266 0 28 chr9 21475633 21475810 -96386817 + MER104 DNA Tc2 6 177 -3 1849 158 33 22 chr9 21476920 21477025 -96385602 + MLT1A1 LTR MaLR 1 103 -262 2399 103 36 20 chr9 21477025 21477383 -96385244 - THE1B LTR MaLR 0 364 1 1849 158 33 22 chr9 21477383 21477638 -96384989 + MLT1A1 LTR MaLR 103 365 0 401 290 68 31 chr9 21479112 21479274 -96383353 + MIR SINE MIR 22 189 -73 284 315 0 0 chr9 21480100 21480173 -96382454 + L2 LINE L2 3199 3271 -1 366 309 83 28 chr9 21480322 21480503 -96382124 - MIR SINE MIR 0 262 72 207 69 0 0 chr9 21480744 21480773 -96381854 + (CA)n Simple_repeat Simple_repeat 2 30 0 396 213 37 19 chr9 21480777 21480885 -96381742 + MER112 DNA MER1_type 68 177 -83 321 219 48 19 chr9 21480901 21481006 -96381621 + MER112 DNA MER1_type 148 255 -5 375 260 58 0 chr9 21481082 21481186 -96381441 + MIR SINE MIR 82 191 -71 888 201 29 34 chr9 21481268 21481472 -96381155 + MIR SINE MIR 56 258 -4 267 54 0 0 chr9 21481588 21481625 -96381002 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 408 96 78 0 chr9 21481620 21481735 -96380892 + GA-rich Low_complexity Low_complexity 1 124 0 539 28 0 0 chr9 21481739 21481810 -96380817 + L1PA4 LINE L1 6085 6155 0 1521 209 173 30 chr9 21482142 21482616 -96380011 + MLT1F1 LTR MaLR 1 567 0 199 308 0 0 chr9 21482683 21482735 -96379892 - L2 LINE L2 -2 3270 3219 6802 26 7 0 chr9 21482765 21483612 -96379015 - L1P1 LINE L1 -1327 4819 3967 4586 31 1 0 chr9 21483611 21484515 -96378112 + L1P1 LINE L1 4817 5721 -434 * 3980 36 0 0 chr9 21484615 21485107 -96377520 + L1PA3 LINE L1 5668 6159 0 787 238 55 8 chr9 21485305 21485633 -96376994 + MLT2F LTR ERVL 1 390 -273 496 176 48 64 chr9 21485677 21485802 -96376825 + MLT2F LTR ERVL 479 601 -62 197 321 49 12 chr9 21486435 21486516 -96376111 + MIR SINE MIR 27 110 -98 622 206 59 0 chr9 21488745 21488881 -96373746 + MIR SINE MIR 83 226 -36 595 253 5 74 chr9 21489149 21489351 -96373276 - MIR SINE MIR -5 257 70 339 254 29 80 chr9 21489442 21489580 -96373047 - MIR SINE MIR -59 149 19 387 0 0 0 chr9 21490015 21490058 -96372569 + (CA)n Simple_repeat Simple_repeat 1 43 0 198 103 0 0 chr9 21492589 21492618 -96370009 + (ATG)n Simple_repeat Simple_repeat 1 29 0 628 237 48 79 chr9 21492640 21492868 -96369759 - MIR SINE MIR -24 238 18 207 254 0 0 chr9 21493029 21493084 -96369543 + GA-rich Low_complexity Low_complexity 2 56 0 277 241 11 46 chr9 21493248 21493335 -96369292 - MIR SINE MIR -30 232 149 850 232 110 4 chr9 21493345 21493599 -96369028 + MER5C DNA MER1_type 1 281 -43 202 213 59 132 chr9 21493629 21493765 -96368862 - MIR SINE MIR -80 128 3 814 159 0 8 chr9 21493888 21494020 -96368607 + FLAM_A SINE Alu 1 131 -2 416 283 125 11 chr9 21494311 21494495 -96368132 + MIR SINE MIR 1 205 -57 617 231 62 82 chr9 21495716 21495972 -96366655 - MLT1L LTR MaLR -220 395 145 340 285 235 24 chr9 21496264 21496453 -96366174 + MIR SINE MIR 19 244 -18 401 192 14 0 chr9 21496634 21496707 -96365920 - MER2 DNA MER2_type -5 340 267 183 42 0 0 chr9 21496732 21496756 -96365871 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1096 164 63 34 chr9 21496806 21497013 -96365614 - AluJo SINE Alu -97 215 3 997 208 5 14 chr9 21497024 21497076 -96365551 - MER2 DNA MER2_type -135 210 159 1918 152 124 26 chr9 21497076 21497464 -96365163 + MSTA LTR MaLR 1 426 -2 997 208 5 14 chr9 21497464 21497623 -96365004 - MER2 DNA MER2_type -186 159 1 321 26 0 0 chr9 21497945 21497983 -96364644 + (TG)n Simple_repeat Simple_repeat 1 38 0 268 288 32 0 chr9 21497993 21498118 -96364509 + L1MC4 LINE L1 7914 8042 0 503 261 170 0 chr9 21500026 21500179 -96362448 - MER5A DNA MER1_type -1 188 10 431 278 146 0 chr9 21500600 21500744 -96361883 + MIR SINE MIR 10 174 -88 246 276 40 0 chr9 21500925 21501001 -96361626 - L2 LINE L2 -225 3047 2969 454 200 48 9 chr9 21501049 21501154 -96361473 - MER5A DNA MER1_type -77 112 4 191 312 71 57 chr9 21501154 21501285 -96361342 - L2 LINE L2 -299 2973 2841 375 211 77 29 chr9 21502079 21502183 -96360444 - L2 LINE L2 0 3313 3205 252 305 62 80 chr9 21502932 21503403 -96359224 - L2 LINE L2 -213 3059 2619 3201 192 38 66 chr9 21503407 21504193 -96358434 + L1MB5 LINE L1 3531 4282 -1864 2270 101 0 3 chr9 21504193 21504490 -96358137 + AluSc SINE Alu 1 296 -13 3201 192 38 66 chr9 21504490 21504745 -96357882 + L1MB5 LINE L1 4282 4543 -1603 486 165 0 0 chr9 21504745 21504823 -96357804 + Tigger5 DNA MER2_type 1 78 -2245 434 190 0 0 chr9 21504823 21504902 -96357725 - Tigger5 DNA MER2_type -3 2320 2242 * 440 219 0 0 chr9 21504892 21504974 -96357653 + Tigger5 DNA MER2_type 2242 2323 0 1651 206 40 30 chr9 21504974 21505255 -96357372 + L1MB5 LINE L1 4542 4830 -1316 2012 159 0 0 chr9 21505255 21505551 -96357076 + AluSx SINE Alu 1 296 -16 1651 206 40 30 chr9 21505551 21505697 -96356930 + L1MB5 LINE L1 4830 4973 -1173 417 141 39 11 chr9 21505713 21505808 -96356819 + L1MC2 LINE L1 6242 7785 0 293 51 0 0 chr9 21505816 21505855 -96356772 + AluSq/x SINE Alu 95 133 -169 1495 227 54 143 chr9 21505859 21506672 -96355955 + L1ME1 LINE L1 5440 6161 -5 4232 174 28 27 chr9 21506694 21507875 -96354752 + L1MB5 LINE L1 4980 6167 -7 28 61 0 0 chr9 21510008 21510057 -96352570 + AT_rich Low_complexity Low_complexity 1 49 0 370 249 170 55 chr9 21510171 21510336 -96352291 + MIR SINE MIR 65 248 -14 199 408 41 0 chr9 21510821 21510990 -96351637 - L2 LINE L2 -357 2957 2782 * 559 317 11 6 chr9 21510985 21511165 -96351462 - MIR SINE MIR 0 262 82 440 185 0 12 chr9 21511172 21511253 -96351374 + Tigger7 DNA MER2_type 2 81 -624 2236 107 0 3 chr9 21511254 21511564 -96351063 + AluSc SINE Alu 1 309 0 390 91 0 0 chr9 21511719 21511774 -96350853 + (CATA)n Simple_repeat Simple_repeat 1 55 0 1987 137 72 23 chr9 21511775 21512256 -96350371 - MLT2A2 LTR ERVL -46 508 1 351 239 0 0 chr9 21512258 21512329 -96350298 + Tigger7 DNA MER2_type 2417 2487 0 187 279 0 0 chr9 21512331 21512374 -96350253 - MIR SINE MIR -219 43 1 494 293 127 19 chr9 21512396 21512703 -96349924 - L2 LINE L2 -536 2778 2439 270 197 28 0 chr9 21512827 21512898 -96349729 + MER103 DNA DNA 46 118 -48 403 274 121 0 chr9 21513746 21513870 -96348757 - MIR SINE MIR -44 218 80 201 177 0 129 chr9 21514251 21514313 -96348314 - L2 LINE L2 -3 3269 3216 431 266 185 21 chr9 21514622 21514822 -96347805 - MIR SINE MIR -12 250 20 23 0 0 0 chr9 21515942 21515965 -96346662 + AT_rich Low_complexity Low_complexity 1 23 0 567 339 87 4 chr9 21516277 21516507 -96346120 - MIR SINE MIR -1 261 13 2236 97 3 16 chr9 21517162 21517470 -96345157 + AluSq SINE Alu 2 305 -8 329 347 18 30 chr9 21517572 21517739 -96344888 - L2 LINE L2 -556 2758 2594 27 0 0 0 chr9 21518733 21518760 -96343867 + AT_rich Low_complexity Low_complexity 1 27 0 419 311 7 7 chr9 21518771 21518906 -96343721 - MIR SINE MIR -16 246 112 340 280 90 0 chr9 21519774 21519874 -96342753 + MIR SINE MIR 118 226 -36 188 266 89 89 chr9 21520704 21520862 -96341765 + MIR SINE MIR 16 173 -89 375 190 323 38 chr9 21520928 21521086 -96341541 - MIR SINE MIR -28 234 32 459 261 112 15 chr9 21523213 21523347 -96339280 - MIR SINE MIR -102 160 14 624 265 93 0 chr9 21523599 21523761 -96338866 + MER45A DNA AcHobo 2 178 0 230 322 81 0 chr9 21524129 21524303 -96338324 + L1ME LINE L1 5594 5781 -340 1142 193 52 0 chr9 21524326 21524538 -96338089 - MER58A DNA MER1_type 0 224 2 786 305 27 19 chr9 21526173 21526432 -96336195 - MIR SINE MIR 0 262 2 32 26 0 0 chr9 21526993 21527032 -96335595 + AT_rich Low_complexity Low_complexity 1 39 0 1929 80 30 0 chr9 21527152 21527452 -96335175 + L1MA3 LINE L1 5997 6305 0 391 313 92 24 chr9 21527617 21527820 -96334807 + MIR SINE MIR 48 262 0 511 256 19 0 chr9 21528079 21528235 -96334392 + MER117 DNA MER1_type 2 160 -37 271 284 0 11 chr9 21528316 21528411 -96334216 + (TA)n Simple_repeat Simple_repeat 1 94 0 2286 128 0 0 chr9 21528713 21529025 -96333602 - AluSx SINE Alu 0 312 1 1396 264 22 17 chr9 21529678 21530094 -96332533 + L1MA7 LINE L1 1 418 -5863 906 147 7 0 chr9 21530099 21530235 -96332392 + AluSg/x SINE Alu 168 304 -8 315 292 12 67 chr9 21530242 21530455 -96332172 + L1MA7 LINE L1 414 644 -4706 1782 265 34 55 chr9 21530768 21531443 -96331184 + L1MA7 LINE L1 832 1492 -4789 * 6493 42 0 0 chr9 21531439 21532253 -96330374 - L1PA5 LINE L1 0 6154 5341 1086 218 17 20 chr9 21532264 21532640 -96329987 + L1MA7 LINE L1 1488 1852 -4499 * 6671 183 26 33 chr9 21532638 21532976 -96329651 + L1MA7 LINE L1 3962 4301 -2194 2195 119 76 15 chr9 21532976 21533319 -96329308 - THE1B LTR MaLR 0 364 1 6671 183 26 33 chr9 21533319 21534756 -96327871 + L1MA7 LINE L1 4301 5747 -748 1814 170 3 23 chr9 21534756 21535056 -96327571 + AluJb SINE Alu 1 294 -18 6671 183 26 33 chr9 21535056 21535325 -96327302 + L1MA7 LINE L1 5747 6016 -479 207 0 0 0 chr9 21535325 21535348 -96327279 + (TA)n Simple_repeat Simple_repeat 1 23 0 6671 183 26 33 chr9 21535348 21535855 -96326772 + L1MA7 LINE L1 6016 6489 -6 985 256 183 13 chr9 21536006 21536471 -96326156 - MLT2F LTR ERVL -119 544 1 189 74 0 0 chr9 21537556 21537583 -96325044 + (CA)n Simple_repeat Simple_repeat 2 28 0 2186 128 0 7 chr9 21537846 21538152 -96324475 - AluSx SINE Alu -8 304 1 1494 173 71 66 chr9 21538293 21538783 -96323844 - MLT2A2 LTR ERVL 0 554 51 2329 82 0 3 chr9 21538783 21539076 -96323551 - AluY SINE Alu -19 292 1 1494 173 71 66 chr9 21539076 21539128 -96323499 - MLT2A2 LTR ERVL -503 51 1 211 172 0 47 chr9 21539321 21539385 -96323242 + CT-rich Low_complexity Low_complexity 4 64 0 313 269 173 10 chr9 21539498 21539602 -96323025 - MIR SINE MIR -18 244 124 1418 201 11 4 chr9 21539623 21539891 -96322736 + AluJb SINE Alu 11 280 -32 1237 44 8 12 chr9 21539891 21540138 -96322489 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 256 254 0 0 chr9 21540256 21540319 -96322308 + (TATG)n Simple_repeat Simple_repeat 4 66 0 6899 65 1 1 chr9 21540470 21541644 -96320983 + L1PA7 LINE L1 4976 6151 -3 272 224 35 24 chr9 21541935 21542020 -96320607 + (CATATA)n Simple_repeat Simple_repeat 1 86 0 22 35 0 0 chr9 21542073 21542102 -96320525 + AT_rich Low_complexity Low_complexity 1 29 0 252 200 0 0 chr9 21542262 21542322 -96320305 + (TA)n Simple_repeat Simple_repeat 1 60 0 604 330 34 13 chr9 21543189 21543425 -96319202 - MIR SINE MIR 0 262 22 802 206 78 29 chr9 21545903 21546146 -96316481 + MER112 DNA MER1_type 1 255 -1 228 273 263 0 chr9 21546147 21546246 -96316381 + L2 LINE L2 3189 3313 0 354 349 78 0 chr9 21546893 21547059 -96315568 + MIR SINE MIR 3 181 -81 263 256 16 116 chr9 21547060 21547181 -96315446 - MER102b DNA MER1_type 0 341 233 325 263 0 0 chr9 21547254 21547334 -96315293 + MIR SINE MIR 183 262 0 2224 140 20 12 chr9 21547468 21547867 -96314760 + L1 LINE L1 4873 5274 -872 329 326 61 49 chr9 21597928 21598192 -96264435 + L3b LINE CR1 1281 1547 -36 435 362 33 76 chr9 21598882 21598933 -96263694 + L2 LINE L2 2943 2995 -277 1314 188 51 34 chr9 21598933 21599104 -96263523 - AluJb SINE Alu -15 297 117 271 42 62 0 chr9 21599104 21599152 -96263475 + T-rich Low_complexity Low_complexity 2 52 0 1314 188 51 34 chr9 21599152 21599272 -96263355 - AluJb SINE Alu -195 117 1 435 362 33 76 chr9 21599272 21599549 -96263078 + L2 LINE L2 2995 3257 -15 2919 88 0 8 chr9 21601173 21601558 -96261069 + L1PA7 LINE L1 5764 6145 -9 29860 50 1 2 chr9 21601626 21605273 -96257354 + L1PA3 LINE L1 9 3652 -2494 14863 33 1 0 chr9 21605416 21607876 -96254751 + L1PA3 LINE L1 3687 6152 -3 1843 182 35 18 chr9 21607917 21608257 -96254370 + MER7A DNA MER2_type 2 345 -1 3129 191 37 6 chr9 21608299 21608844 -96253783 + MER68 LTR ERV1 1 562 0 235 247 82 0 chr9 21609083 21609156 -96253471 - MIR3 SINE MIR -21 187 109 23 0 0 0 chr9 21609707 21609730 -96252897 + AT_rich Low_complexity Low_complexity 1 23 0 674 138 33 53 chr9 21609852 21610004 -96252623 + MER104 DNA Tc2 1 149 -31 1438 258 79 26 chr9 21610073 21610566 -96252061 + LTR33 LTR ERVL 3 521 0 555 250 171 0 chr9 21610592 21610732 -96251895 + MER5A DNA MER1_type 26 189 0 682 268 111 4 chr9 21612240 21612475 -96250152 + MIR SINE MIR 2 261 -1 2159 284 30 11 chr9 21612823 21613489 -96249138 + L1MEc LINE L1 36 714 -5682 180 77 0 0 chr9 21613644 21613670 -96248957 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 3426 172 106 22 chr9 21613844 21614570 -96248057 - LTR48 LTR ERV1 0 787 1 543 299 67 14 chr9 21616139 21616377 -96246250 + MLT1J LTR MaLR 84 394 -117 416 304 130 0 chr9 21616607 21616745 -96245882 - MIR SINE MIR -87 175 20 654 272 31 51 chr9 21616767 21617021 -96245606 - MIR SINE MIR 0 262 14 22 0 0 0 chr9 21617559 21617581 -96245046 + AT_rich Low_complexity Low_complexity 1 22 0 339 228 12 7 chr9 21617697 21617800 -96244827 + L1M4 LINE L1 3628 3728 -2418 2090 241 55 48 chr9 21617800 21618369 -96244258 + MLT1E LTR MaLR 1 573 -20 1230 321 73 50 chr9 21618395 21618900 -96243727 + L1M4 LINE L1 3733 4249 -1897 1022 231 82 23 chr9 21618900 21619156 -96243471 - MLT1D LTR MaLR 0 505 235 1816 236 111 39 chr9 21619168 21619308 -96243319 - L1M4 LINE L1 -916 5230 5102 3020 125 29 9 chr9 21619308 21619755 -96242872 + L1PA15 LINE L1 5710 6165 0 1816 236 111 39 chr9 21619755 21620413 -96242214 - L1M4 LINE L1 -1044 5102 4374 320 286 0 12 chr9 21620697 21620781 -96241846 + MER5B DNA MER1_type 1 83 -95 850 257 11 0 chr9 21621119 21621294 -96241333 - MER45A DNA AcHobo 0 178 2 2242 113 6 3 chr9 21621440 21621751 -96240876 + AluSx SINE Alu 1 312 0 579 126 0 0 chr9 21622359 21622454 -96240173 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 333 275 162 7 chr9 21622728 21622870 -96239757 + MIR3 SINE MIR 41 204 -4 659 284 65 35 chr9 21623045 21623274 -96239353 - MIR SINE MIR -19 243 8 2453 137 3 0 chr9 21623648 21623990 -96238637 + MER2 DNA MER2_type 1 343 -1 261 296 136 41 chr9 21624044 21624213 -96238414 - MIR3 SINE MIR -14 194 10 775 211 96 38 chr9 21624231 21624492 -96238135 + MLT1C LTR MaLR 192 467 0 401 189 0 7 chr9 21624578 21624667 -96237960 - L1P4 LINE L1 -430 5744 5658 243 277 0 32 chr9 21624619 21624713 -96237914 + L1MC4 LINE L1 6613 6703 -1339 * 1657 212 60 42 chr9 21624756 21625256 -96237371 + L1MA9 LINE L1 5782 6290 -22 1027 208 92 68 chr9 21626765 21627145 -96235482 + MLT1B LTR MaLR 1 389 -1 320 282 24 40 chr9 21627378 21627502 -96235125 - L1MC/D LINE L1 -2060 5748 5627 1702 25 0 0 chr9 21627504 21627702 -96234925 - L1PA4 LINE L1 -1748 4398 4201 8678 39 0 2 chr9 21627702 21629455 -96233172 + L1PA4 LINE L1 4397 6147 -8 497 190 141 63 chr9 21632118 21632260 -96230367 - MER63A DNA MER1_type -1 209 57 318 110 0 55 chr9 21632265 21632338 -96230289 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 1909 152 3 13 chr9 21632835 21633138 -96229489 - AluJo SINE Alu -12 300 1 392 171 14 0 chr9 21635037 21635107 -96227520 - L2 LINE L2 0 3313 3243 9161 247 22 46 chr9 21635524 21639506 -96223121 + L1PA12 LINE L1 1 3357 -4227 6519 176 46 107 chr9 21639606 21640414 -96222213 - Charlie1 DNA MER1_type -165 2596 1740 2310 109 0 10 chr9 21640414 21640726 -96221901 - AluY SINE Alu -2 309 1 6519 176 46 107 chr9 21640726 21641048 -96221579 - Charlie1 DNA MER1_type -1021 1740 1400 2229 109 0 7 chr9 21641048 21641350 -96221277 + AluY SINE Alu 1 300 -11 6519 176 46 107 chr9 21641350 21642040 -96220587 - Charlie1 DNA MER1_type -1361 1400 887 209 67 0 44 chr9 21642353 21642398 -96220229 + (TTC)n Simple_repeat Simple_repeat 3 180 0 760 196 0 0 chr9 21642398 21642531 -96220096 - FLAM_C SINE Alu 0 178 1 283 246 191 16 chr9 21642544 21642670 -96219957 - MIR3 SINE MIR 0 208 61 209 171 0 0 chr9 21642979 21643014 -96219613 - MER5A DNA MER1_type 0 189 155 252 0 0 0 chr9 21643998 21644026 -96218601 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr9 21644399 21644420 -96218207 + AT_rich Low_complexity Low_complexity 1 21 0 380 290 150 5 chr9 21645168 21645361 -96217266 + MARNA DNA Mariner 238 458 -128 1836 231 91 30 chr9 21645362 21645887 -96216740 + MER69 DNA AcHobo 1 557 -1969 2119 115 3 40 chr9 21646046 21646369 -96216258 + AluSx SINE Alu 1 311 -1 273 29 0 0 chr9 21647391 21647425 -96215202 + (GA)n Simple_repeat Simple_repeat 1 34 0 2022 143 10 0 chr9 21648348 21648649 -96213978 + AluJb SINE Alu 1 304 -8 789 223 143 89 chr9 21648784 21649335 -96213292 + L1ME4a LINE L1 5538 6118 -3 373 314 45 19 chr9 21649472 21649628 -96212999 - Charlie8 DNA MER1_type -2197 220 61 292 268 94 14 chr9 21649768 21649906 -96212721 - L1MC/D LINE L1 -2085 5723 5575 22 35 0 0 chr9 21650016 21650045 -96212582 + AT_rich Low_complexity Low_complexity 1 29 0 280 214 54 18 chr9 21650049 21650161 -96212466 - L1MC/D LINE L1 -758 5406 5291 599 250 62 10 chr9 21650460 21650769 -96211858 + L1ME3A LINE L1 5219 5553 -611 601 268 96 4 chr9 21650827 21651077 -96211550 + L1ME3A LINE L1 5683 5955 -215 231 125 0 0 chr9 21651202 21651242 -96211385 + (TG)n Simple_repeat Simple_repeat 2 41 0 302 306 127 30 chr9 21652070 21652204 -96210423 - L1MC/D LINE L1 -1328 4818 4672 30 27 0 0 chr9 21652557 21652594 -96210033 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 21653116 21653137 -96209490 + AT_rich Low_complexity Low_complexity 1 21 0 778 247 0 33 chr9 21653263 21653445 -96209182 - MER5B DNA MER1_type 0 178 3 450 290 23 22 chr9 21653446 21653606 -96209021 - MER5A DNA MER1_type -3 175 24 266 389 12 0 chr9 21654360 21654527 -96208100 - L1ME LINE L1 -380 5782 5614 683 263 77 16 chr9 21655135 21655329 -96207298 - MIR SINE MIR -10 252 47 26 0 0 0 chr9 21655330 21655356 -96207271 + AT_rich Low_complexity Low_complexity 1 26 0 541 282 42 35 chr9 21655372 21655566 -96207061 + MIR SINE MIR 10 202 -60 22 0 0 0 chr9 21655673 21655695 -96206932 + AT_rich Low_complexity Low_complexity 1 22 0 237 65 0 0 chr9 21656984 21657015 -96205612 + (A)n Simple_repeat Simple_repeat 1 31 0 2012 209 63 29 chr9 21657134 21657622 -96205005 - MLT1D LTR MaLR 0 505 1 290 290 93 9 chr9 21658036 21658143 -96204484 - L2 LINE L2 -23 3249 3134 292 160 0 0 chr9 21658194 21658244 -96204383 - MER5A DNA MER1_type -83 106 57 350 324 50 27 chr9 21658342 21658601 -96204026 - L2 LINE L2 -183 3089 2825 421 356 20 10 chr9 21659269 21659471 -96203156 - MIR SINE MIR -12 250 47 187 302 32 56 chr9 21660063 21660189 -96202438 + L2 LINE L2 3147 3269 -3 266 220 187 22 chr9 21660283 21660374 -96202253 - MER5A DNA MER1_type -10 179 74 2539 68 0 0 chr9 21660382 21660693 -96201934 - AluY SINE Alu 0 311 1 5749 124 37 31 chr9 21660713 21661499 -96201128 - L1MA8 LINE L1 -2 6289 5495 2078 116 3 7 chr9 21661499 21661809 -96200818 - AluSc SINE Alu 0 309 1 5749 124 37 31 chr9 21661809 21662160 -96200467 - L1MA8 LINE L1 -796 5495 5148 199 354 0 0 chr9 21662171 21662236 -96200391 - MER5A DNA MER1_type -124 65 1 383 227 21 0 chr9 21662532 21662629 -96199998 + MER103 DNA DNA 3 101 -65 6851 58 14 0 chr9 21663283 21664704 -96197923 - L1PA6 LINE L1 -2 6152 4728 332 319 58 26 chr9 21664756 21664947 -96197680 - MIR SINE MIR -55 207 11 262 356 185 33 chr9 21665400 21665670 -96196957 + L3 LINE CR1 32 342 -1235 215 242 137 112 chr9 21665744 21665905 -96196722 - MIR SINE MIR -1 261 97 557 306 57 26 chr9 21665992 21666257 -96196370 + L3 LINE CR1 418 690 -887 320 271 90 15 chr9 21668092 21668225 -96194402 + MIR SINE MIR 5 147 -115 573 196 14 20 chr9 21669936 21670084 -96192543 - L1MB3 LINE L1 -1 6182 6036 14586 208 16 12 chr9 21670085 21674741 -96187886 - L1PB1 LINE L1 -4 6863 2135 1329 211 144 36 chr9 21674761 21675239 -96187388 + LTR10B LTR ERV1 15 544 -3 3862 159 29 17 chr9 21675252 21676013 -96186614 - L1PB1 LINE L1 -4635 2227 1387 869 229 5 0 chr9 21676013 21676201 -96186426 - L1PB1 LINE L1 -6669 194 6 3880 181 45 8 chr9 21676212 21677141 -96185486 - L1MB4 LINE L1 -112 6068 5095 463 214 8 16 chr9 21677157 21677283 -96185344 - L1MC4 LINE L1 0 8042 7918 238 156 0 109 chr9 21677371 21677435 -96185192 - L1MC4 LINE L1 -130 7912 7856 419 259 14 42 chr9 21677438 21677581 -96185046 - LTR52 LTR ERVL -260 161 23 828 219 0 0 chr9 21677590 21677736 -96184891 + FRAM SINE Alu 1 146 -30 1898 244 51 12 chr9 21677788 21678357 -96184270 - L1MC4a LINE L1 -991 6817 6227 1108 198 118 4 chr9 21678360 21678597 -96184030 + AluJo SINE Alu 2 265 -47 2442 277 67 55 chr9 21678604 21680326 -96182301 - L1MC4a LINE L1 -743 5403 3703 16106 39 1 1 chr9 21680326 21683072 -96179555 - L1PA3 LINE L1 0 6155 3410 2442 277 67 55 chr9 21683072 21683221 -96179406 - L1MC4a LINE L1 -2443 3703 3557 422 209 22 108 chr9 21683221 21683360 -96179267 - FLAM_A SINE Alu -2 131 5 2442 277 67 55 chr9 21683360 21683668 -96178959 - L1MC4a LINE L1 -2589 3557 4002 280 43 21 21 chr9 21683668 21683715 -96178912 + (TG)n Simple_repeat Simple_repeat 2 48 0 2442 277 67 55 chr9 21683715 21684630 -96177997 - L1MC4a LINE L1 -2143 4003 3100 21 0 0 0 chr9 21684639 21684660 -96177967 + AT_rich Low_complexity Low_complexity 1 21 0 235 48 24 24 chr9 21684677 21684719 -96177908 + (CA)n Simple_repeat Simple_repeat 1 42 0 315 329 80 7 chr9 21684728 21685014 -96177613 + L1M4 LINE L1 4017 4323 -1823 789 172 44 59 chr9 21685379 21685583 -96177044 + MER106A DNA MER1_type 36 236 0 470 277 41 69 chr9 21685584 21686003 -96176624 - HAL1b LINE L1 -731 617 211 1465 215 27 52 chr9 21686170 21686538 -96176089 - MLT1A1 LTR MaLR 0 365 7 21 0 0 0 chr9 21686549 21686570 -96176057 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 21688825 21688849 -96173778 + AT_rich Low_complexity Low_complexity 1 24 0 246 62 0 0 chr9 21689679 21689711 -96172916 + (T)n Simple_repeat Simple_repeat 1 32 0 417 271 103 87 chr9 21689783 21690104 -96172523 + MLT1L LTR MaLR 197 522 -93 323 265 103 0 chr9 21690957 21691093 -96171534 - L1ME4a LINE L1 -15 6106 5957 365 338 41 14 chr9 21691296 21691441 -96171186 - MIR SINE MIR -94 168 20 282 286 71 0 chr9 21691657 21691797 -96170830 + L1ME4a LINE L1 5957 6106 -15 512 272 99 28 chr9 21693125 21693497 -96169130 + MLT1J2 LTR MaLR 4 436 -14 690 271 124 21 chr9 21693864 21694372 -96168255 - L1ME4a LINE L1 -3 6118 5513 458 257 35 0 chr9 21694597 21694710 -96167917 - MLT1I LTR MaLR -5 404 288 617 258 86 11 chr9 21694745 21694931 -96167696 - MLT1I LTR MaLR -208 201 2 1573 225 33 12 chr9 21695041 21695375 -96167252 + MER58B DNA MER1_type 1 341 0 321 298 0 57 chr9 21696881 21697005 -96165622 - MIR SINE MIR -50 212 96 363 313 37 29 chr9 21698679 21698922 -96163705 + L1MC4a LINE L1 5629 5873 -1935 26 50 0 0 chr9 21698931 21698971 -96163656 + AT_rich Low_complexity Low_complexity 1 40 0 185 231 0 15 chr9 21698998 21699063 -96163564 + (TA)n Simple_repeat Simple_repeat 2 65 0 22 35 0 0 chr9 21699220 21699249 -96163378 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr9 21699344 21699371 -96163256 + AT_rich Low_complexity Low_complexity 1 27 0 209 356 0 14 chr9 21702266 21702339 -96160288 + MIR SINE MIR 25 96 -166 2185 125 3 0 chr9 21702484 21702795 -96159832 + AluSx SINE Alu 1 312 0 26 30 0 0 chr9 21702904 21702937 -96159690 + AT_rich Low_complexity Low_complexity 1 33 0 450 230 16 56 chr9 21703144 21703270 -96159357 + MER103 DNA DNA 46 166 0 27 0 0 0 chr9 21703271 21703298 -96159329 + AT_rich Low_complexity Low_complexity 1 27 0 1711 174 4 0 chr9 21703303 21703578 -96159049 - AluSx SINE Alu -36 276 1 223 238 25 75 chr9 21704246 21704326 -96158301 - MIR SINE MIR -161 101 26 236 143 71 0 chr9 21704592 21704634 -96157993 + MER94 DNA DNA 13 57 -77 283 197 98 0 chr9 21705703 21705764 -96156863 + L2 LINE L2 3206 3272 0 857 247 48 13 chr9 21705888 21706119 -96156508 - MIR SINE MIR -12 250 12 1249 228 90 41 chr9 21707572 21707962 -96154665 + MLT2B1 LTR ERVL 112 520 0 374 169 145 12 chr9 21707962 21708044 -96154583 - MLT1B LTR MaLR -297 93 1 1057 143 0 19 chr9 21708759 21708920 -96153707 + FRAM SINE Alu 1 157 -19 1336 261 127 49 chr9 21709025 21709680 -96152947 + MER50 LTR ERV1 10 715 -19 271 184 20 0 chr9 21710215 21710264 -96152363 + L2 LINE L2 3205 3254 -18 2750 129 48 22 chr9 21710880 21711297 -96151330 + MSTC LTR MaLR 1 428 0 2621 160 21 9 chr9 21712434 21712871 -96149756 - MSTB2 LTR MaLR -1 456 15 605 130 113 9 chr9 21713241 21713356 -96149271 - L2 LINE L2 0 3313 3187 25 65 0 0 chr9 21713363 21713409 -96149218 + AT_rich Low_complexity Low_complexity 1 46 0 277 283 17 42 chr9 21715307 21715427 -96147200 - LTR67 LTR ERVL 0 557 441 1753 226 38 29 chr9 21715783 21715971 -96146656 + MER39 LTR ERV1 250 435 -272 2422 117 22 30 chr9 21715971 21716338 -96146289 + THE1B LTR MaLR 1 364 0 1753 226 38 29 chr9 21716338 21716600 -96146027 + MER39 LTR ERV1 435 704 -3 451 309 52 56 chr9 21716648 21716881 -96145746 - L2 LINE L2 -36 3277 3046 * 601 314 30 21 chr9 21716866 21717102 -96145525 - L2 LINE L2 -444 2870 2633 2482 146 6 6 chr9 21718266 21718630 -96143997 - THE1B LTR MaLR 0 364 1 10497 96 16 71 chr9 21718630 21719702 -96142925 - THE1C-int LTR MaLR 0 1580 631 7558 55 2 3 chr9 21719702 21720829 -96141798 + L1PA5 LINE L1 5027 6153 -1 10497 96 16 71 chr9 21720829 21721427 -96141200 - THE1C-int LTR MaLR -949 631 2 2601 128 5 13 chr9 21721428 21721804 -96140823 - THE1C LTR MaLR 0 375 3 2292 119 0 0 chr9 21721829 21722139 -96140488 + AluSq SINE Alu 1 310 -3 1275 255 76 24 chr9 21722655 21723074 -96139553 - LTR16A1 LTR ERVL 0 457 17 674 261 157 22 chr9 21723213 21723531 -96139096 + MLT1D LTR MaLR 1 361 -144 1831 142 0 0 chr9 21723535 21723810 -96138817 - AluJb SINE Alu -37 275 1 2047 232 24 20 chr9 21723888 21724393 -96138234 - L1ME3A LINE L1 0 6170 5664 688 223 62 5 chr9 21724391 21724584 -96138043 - L1ME3A LINE L1 -1567 4579 4376 * 206 318 229 0 chr9 21724969 21725139 -96137488 - MIR SINE MIR -8 254 46 460 259 52 59 chr9 21725328 21725598 -96137029 - L1ME4a LINE L1 -279 5842 5575 231 240 107 13 chr9 21725748 21725823 -96136804 - L1M3 LINE L1 -749 5431 5350 1343 192 112 14 chr9 21726283 21726559 -96136068 - AluJo SINE Alu -8 304 2 234 234 0 31 chr9 21726564 21726628 -96135999 + MER103 DNA DNA 55 116 -50 8178 89 6 19 chr9 21726950 21728036 -96134591 - MER11C LTR ERVK 0 1071 1 267 331 50 25 chr9 21728680 21728801 -96133826 - MIR SINE MIR -82 180 57 399 243 45 27 chr9 21729037 21729148 -96133479 - MIR SINE MIR -44 218 106 1493 199 14 4 chr9 21729810 21730086 -96132541 + AluJo SINE Alu 5 283 -29 214 330 160 0 chr9 21730356 21730450 -96132177 - L2 LINE L2 0 3272 3164 350 299 65 14 chr9 21730964 21731128 -96131499 - MIR SINE MIR -63 145 16 2472 76 3 0 chr9 21731318 21731622 -96131005 + AluY SINE Alu 1 305 -6 1736 193 16 41 chr9 21731720 21732088 -96130539 + MSTD LTR MaLR 1 359 -37 2074 87 3 47 chr9 21732090 21732198 -96130429 + L1PB1 LINE L1 5866 5977 -174 2360 80 6 22 chr9 21732198 21732510 -96130117 + AluSc SINE Alu 1 307 -2 2074 87 3 47 chr9 21732510 21732700 -96129927 + L1PB1 LINE L1 5977 6151 0 380 94 0 0 chr9 21732735 21732788 -96129839 + MSTD LTR MaLR 344 396 0 1125 233 159 43 chr9 21732976 21733246 -96129381 - MSTD LTR MaLR -2 394 72 1859 168 20 0 chr9 21733246 21733549 -96129078 - AluJb SINE Alu -3 309 1 1125 233 159 43 chr9 21733549 21733630 -96128997 - MSTD LTR MaLR -324 72 2 22 80 0 0 chr9 21733882 21733932 -96128695 + AT_rich Low_complexity Low_complexity 1 50 0 1835 224 23 8 chr9 21734019 21734416 -96128211 - MLT1D LTR MaLR 0 505 103 1628 222 62 44 chr9 21734416 21734456 -96128171 - MLT2B2 LTR ERVL 0 515 477 868 94 7 7 chr9 21734456 21734594 -96128033 + (TAGA)n Simple_repeat Simple_repeat 4 141 0 1628 222 62 44 chr9 21734594 21734986 -96127641 - MLT2B2 LTR ERVL -38 477 75 489 127 0 0 chr9 21735083 21735154 -96127473 - MLT2B2 LTR ERVL -483 71 1 539 168 37 0 chr9 21735158 21735265 -96127362 - MLT1D LTR MaLR -394 111 1 647 261 79 19 chr9 21735549 21735764 -96126863 - MIR SINE MIR -6 256 29 252 0 0 0 chr9 21736406 21736434 -96126193 + (TG)n Simple_repeat Simple_repeat 2 29 0 1881 160 121 8 chr9 21737119 21737475 -96125152 + MSTD LTR MaLR 1 396 0 1012 292 157 14 chr9 21737524 21737991 -96124636 + MLT1G1 LTR MaLR 1 595 0 355 223 146 19 chr9 21738051 21738154 -96124473 - MER117 DNA MER1_type -80 117 2 2386 138 19 11 chr9 21738256 21738617 -96124010 + THE1B LTR MaLR 1 364 0 191 293 52 0 chr9 21738879 21738937 -96123690 + L2 LINE L2 3250 3310 -3 309 224 0 0 chr9 21738963 21739021 -96123606 + L2 LINE L2 3207 3264 -8 848 186 16 44 chr9 21739650 21739833 -96122794 - MER5B DNA MER1_type 0 178 1 217 293 10 71 chr9 21740696 21740795 -96121832 + MIR SINE MIR 100 192 -70 221 368 104 8 chr9 21740864 21740989 -96121638 + MIR3 SINE MIR 9 145 -63 888 268 123 40 chr9 21741297 21741719 -96120908 + MLT1L LTR MaLR 159 615 0 270 277 19 129 chr9 21742564 21742820 -96119807 + MER102a DNA MER1_type 93 320 -10 465 239 127 0 chr9 21742849 21742983 -96119644 + MER117 DNA MER1_type 10 160 -37 329 322 58 53 chr9 21743073 21743244 -96119383 + MIR SINE MIR 36 207 -55 1826 152 37 39 chr9 21743852 21744207 -96118420 + MLT1A1 LTR MaLR 10 363 -2 339 314 38 9 chr9 21744406 21744511 -96118116 - MIR SINE MIR -80 128 21 578 258 137 0 chr9 21744542 21744732 -96117895 - MIR SINE MIR -1 261 46 1727 209 22 6 chr9 21744830 21745189 -96117438 - MLT1A1 LTR MaLR 0 365 1 291 260 13 39 chr9 21746298 21746375 -96116252 + L2 LINE L2 3239 3313 0 738 248 139 0 chr9 21746510 21746740 -96115887 + MIR SINE MIR 1 262 0 241 239 82 114 chr9 21747282 21747466 -96115161 + L2 LINE L2 3124 3301 -12 228 222 0 0 chr9 21748927 21748972 -96113655 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr9 21749314 21749338 -96113289 + AT_rich Low_complexity Low_complexity 1 24 0 431 336 149 5 chr9 21750951 21751165 -96111462 - MIR SINE MIR -13 249 5 263 188 0 0 chr9 21752779 21752827 -96109800 - MIR SINE MIR -125 137 90 308 246 0 0 chr9 21752904 21752969 -96109658 + Zaphod DNA AcHobo 1 65 -3966 663 146 15 102 chr9 21753105 21753311 -96109316 + MER53 DNA DNA 2 189 0 1093 209 58 102 chr9 21753373 21753766 -96108861 - MLT1B LTR MaLR 0 390 15 273 337 0 0 chr9 21753783 21753884 -96108743 + MER115 DNA AcHobo 335 435 -258 345 328 66 11 chr9 21754167 21754350 -96108277 + MIR SINE MIR 59 251 -11 296 318 28 9 chr9 21755052 21755159 -96107468 + MIR SINE MIR 21 129 -133 214 150 25 0 chr9 21755190 21755230 -96107397 + L2 LINE L2 3214 3254 -18 358 240 139 62 chr9 21756471 21756600 -96106027 - L2 LINE L2 0 3272 3134 41988 42 2 1 chr9 21756628 21762766 -96099861 + L1PA4 LINE L1 7 6152 -3 209 190 224 0 chr9 21762935 21762993 -96099634 + L2 LINE L2 3201 3271 -1 740 288 37 21 chr9 21763062 21763305 -96099322 - MIR SINE MIR -14 248 2 295 320 0 0 chr9 21766503 21766578 -96096049 + polypyrimidine Low_complexity Low_complexity 2 76 0 28 29 0 0 chr9 21766915 21766950 -96095677 + AT_rich Low_complexity Low_complexity 1 35 0 230 253 131 0 chr9 21767150 21767249 -96095378 - L1MC/D LINE L1 -2038 5839 5728 1100 216 186 43 chr9 21767346 21767744 -96094883 - LTR16A1 LTR ERVL -2 455 1 201 39 0 0 chr9 21767782 21767808 -96094819 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 237 271 0 0 chr9 21767810 21767858 -96094769 + C-rich Low_complexity Low_complexity 4 51 0 287 330 19 19 chr9 21767952 21768167 -96094460 - L1MC/D LINE L1 -575 5664 5450 307 325 36 34 chr9 21768202 21768327 -96094300 - L1MC/D LINE L1 -1052 5163 5040 1859 151 43 32 chr9 21768327 21768697 -96093930 + THE1C LTR MaLR 2 375 0 307 325 36 34 chr9 21768697 21768928 -96093699 - L1MC/D LINE L1 -1175 5040 4806 581 163 0 0 chr9 21769054 21769146 -96093481 - FLAM_C SINE Alu -38 105 14 560 279 172 31 chr9 21769162 21770033 -96092594 - L1MC/D LINE L1 -1561 4654 3661 363 306 65 26 chr9 21770098 21770327 -96092300 - L1MC/D LINE L1 -4098 2298 2061 22 56 0 0 chr9 21770489 21770525 -96092102 + AT_rich Low_complexity Low_complexity 1 36 0 343 328 64 0 chr9 21770606 21770777 -96091850 - L1MC/D LINE L1 -4703 1693 1512 395 385 31 10 chr9 21770777 21770972 -96091655 - HAL1 LINE L1 -1053 1454 1256 412 302 94 7 chr9 21771102 21771251 -96091376 + L2 LINE L2 2469 2630 -684 271 292 45 0 chr9 21771473 21771562 -96091065 + L2 LINE L2 3221 3313 0 811 222 22 5 chr9 21773593 21773778 -96088849 + MLT1E LTR MaLR 406 593 0 1627 232 46 23 chr9 21775027 21775505 -96087122 - L1ME3A LINE L1 -25 6145 5657 22 56 0 0 chr9 21777014 21777050 -96085577 + AT_rich Low_complexity Low_complexity 1 36 0 2101 152 0 6 chr9 21777143 21777498 -96085129 + MLT1A1 LTR MaLR 1 353 -12 273 383 13 40 chr9 21777640 21777789 -96084838 - L2 LINE L2 -2 3270 3126 931 191 77 23 chr9 21777813 21777860 -96084767 - L1MB1 LINE L1 -1 6167 6124 2268 97 3 10 chr9 21777860 21778168 -96084459 - AluY SINE Alu -5 306 1 931 191 77 23 chr9 21778168 21778340 -96084287 - L1MB1 LINE L1 -44 6124 5936 * 1164 189 35 2 chr9 21778333 21778599 -96084028 + L1MB1 LINE L1 5693 5937 -231 244 257 139 10 chr9 21778610 21778711 -96083916 + MIR SINE MIR 149 262 0 375 271 181 23 chr9 21779092 21779302 -96083325 - L1M4 LINE L1 -3081 3065 2803 1952 123 7 7 chr9 21779302 21779603 -96083024 - L1PA10 LINE L1 0 6168 5868 375 271 181 23 chr9 21779603 21779658 -96082969 - L1M4 LINE L1 -3343 2803 2758 237 189 19 0 chr9 21779673 21779726 -96082901 + (TA)n Simple_repeat Simple_repeat 1 54 0 1437 110 0 0 chr9 21779949 21780131 -96082496 - AluSx SINE Alu -130 182 1 2183 113 3 0 chr9 21780978 21781269 -96081358 - AluSp SINE Alu -21 292 1 2062 60 24 94 chr9 21781696 21782027 -96080600 + AluYb8 SINE Alu 1 308 -10 570 258 129 5 chr9 21783351 21783545 -96079082 - MIR SINE MIR 0 262 45 302 273 182 49 chr9 21784630 21784773 -96077854 + L2 LINE L2 3111 3272 0 211 277 48 48 chr9 21784822 21784905 -96077722 - L2 LINE L2 -5 3267 3185 216 376 120 0 chr9 21785386 21785511 -96077116 - L2 LINE L2 0 3272 3133 317 206 49 108 chr9 21785541 21785722 -96076905 - Charlie1 DNA MER1_type 0 2761 2591 2083 88 33 0 chr9 21785722 21786020 -96076607 + AluSg SINE Alu 1 307 0 317 206 49 108 chr9 21786020 21786041 -96076586 - Charlie1 DNA MER1_type -170 2591 2570 213 175 123 18 chr9 21786537 21786594 -96076033 - MIR3 SINE MIR -133 75 13 497 344 82 29 chr9 21787741 21788020 -96074607 + L2 LINE L2 2979 3272 0 23 0 0 0 chr9 21788219 21788242 -96074385 + AT_rich Low_complexity Low_complexity 1 23 0 386 286 94 49 chr9 21788348 21788551 -96074076 - MIR SINE MIR -14 248 37 263 206 0 73 chr9 21788566 21788702 -96073925 + A-rich Low_complexity Low_complexity 4 129 0 274 325 114 8 chr9 21788809 21788932 -96073695 + L2 LINE L2 3133 3268 -4 191 280 59 110 chr9 21788959 21789077 -96073550 + L3 LINE CR1 106 217 -1360 212 283 0 0 chr9 21790707 21790753 -96071874 + (TATG)n Simple_repeat Simple_repeat 2 47 0 374 239 100 25 chr9 21790753 21790829 -96071798 - MLT2C1 LTR ERVL -55 342 273 376 238 93 46 chr9 21790829 21790980 -96071647 - MLT1E3 LTR MaLR -405 219 62 374 239 100 25 chr9 21790980 21791020 -96071607 - MLT2C1 LTR ERVL -124 273 1 28 0 0 0 chr9 21791031 21791059 -96071568 + AT_rich Low_complexity Low_complexity 1 28 0 834 280 119 47 chr9 21793117 21793809 -96068818 + L2 LINE L2 2554 3308 -5 333 0 0 0 chr9 21794001 21794038 -96068589 + (TG)n Simple_repeat Simple_repeat 2 38 0 3838 184 50 18 chr9 21794041 21795338 -96067289 - L1MB5 LINE L1 -17 6157 4809 182 147 0 0 chr9 21796376 21796410 -96066217 - MIR SINE MIR -122 140 107 311 289 71 15 chr9 21797584 21797781 -96064846 + L1MC/D LINE L1 5270 5477 -2331 2958 209 30 25 chr9 21797798 21798431 -96064196 + L1M1 LINE L1 17 652 -6913 468 226 0 0 chr9 21798589 21798682 -96063945 + MIR SINE MIR 52 144 -64 184 286 0 0 chr9 21798736 21798785 -96063842 + L2 LINE L2 3167 3215 -98 235 272 302 13 chr9 21798858 21799014 -96063613 - MIR SINE MIR -48 214 17 388 353 53 5 chr9 21800279 21800486 -96062141 - MIR SINE MIR -42 220 4 307 293 55 37 chr9 21800486 21800595 -96062032 + MIR SINE MIR 87 198 -64 1859 197 28 30 chr9 21800597 21800958 -96061669 + MLT1A1 LTR MaLR 3 362 -3 2697 39 3 0 chr9 21802192 21802502 -96060125 + AluY SINE Alu 1 311 0 364 265 157 27 chr9 21803738 21803923 -96058704 + HAL1b LINE L1 52 260 -1088 296 226 16 0 chr9 21804011 21804073 -96058554 - Charlie1a DNA MER1_type 0 1455 1393 1280 224 27 71 chr9 21804077 21804104 -96058523 - MLT2D LTR ERVL -8 456 429 426 85 0 0 chr9 21804104 21804163 -96058464 + (CGGA)n Simple_repeat Simple_repeat 2 60 0 2269 125 44 39 chr9 21804167 21804528 -96058099 + THE1B LTR MaLR 2 364 0 1280 224 27 71 chr9 21804528 21804925 -96057702 - MLT2D LTR ERVL -38 426 1 2163 184 110 7 chr9 21804929 21805509 -96057118 - Charlie1a DNA MER1_type -62 1393 754 1809 226 19 2 chr9 21805673 21806084 -96056543 - Charlie1a DNA MER1_type -708 747 330 659 195 152 6 chr9 21806069 21806233 -96056394 - Charlie1a DNA MER1_type -1231 224 37 * 38 0 0 0 chr9 21806237 21806275 -96056352 + AT_rich Low_complexity Low_complexity 1 38 0 1474 135 65 4 chr9 21806277 21806537 -96056090 - L1MA2 LINE L1 -4 6300 6025 182 83 0 0 chr9 21806538 21806562 -96056065 - MER5A DNA MER1_type -165 24 1 292 267 145 15 chr9 21806562 21806693 -96055934 + HAL1b LINE L1 355 502 -846 2219 113 3 3 chr9 21806861 21807171 -96055456 + AluSp SINE Alu 1 310 -3 390 245 66 0 chr9 21807270 21807376 -96055251 - L1MA9 LINE L1 -261 6051 5939 * 909 209 20 35 chr9 21807358 21807587 -96055040 + L1MA9 LINE L1 6016 6144 -24 1564 122 11 66 chr9 21807851 21808138 -96054489 + MLT1B LTR MaLR 120 390 0 540 238 38 75 chr9 21808286 21808527 -96054100 - MLT1J LTR MaLR 0 511 313 375 276 61 0 chr9 21808802 21808900 -96053727 + MER94 DNA DNA 10 113 -21 451 217 29 91 chr9 21809057 21809232 -96053395 - MER5A DNA MER1_type -22 167 4 420 289 47 23 chr9 21809656 21809784 -96052843 - L2 LINE L2 -1 3271 3141 1083 263 59 130 chr9 21810385 21810586 -96052041 + MLT1G1 LTR MaLR 1 215 -380 1692 154 100 4 chr9 21810586 21810866 -96051761 + AluSx SINE Alu 1 307 -5 1083 263 59 130 chr9 21810866 21811304 -96051323 + MLT1G1 LTR MaLR 215 595 0 259 347 0 0 chr9 21811420 21811495 -96051132 - MIR SINE MIR -105 157 83 526 271 51 17 chr9 21811541 21811743 -96050884 + MIR SINE MIR 36 242 -20 216 284 60 0 chr9 21811751 21811818 -96050809 + L2 LINE L2 3201 3271 -1 670 283 78 22 chr9 21813005 21813185 -96049442 - MER91A DNA MER1_type -2 194 5 2381 169 39 41 chr9 21814618 21814702 -96047925 - MLT1C LTR MaLR 0 467 384 1478 186 59 10 chr9 21814702 21814992 -96047635 - AluJo SINE Alu -8 304 1 2381 169 39 41 chr9 21814992 21815375 -96047252 - MLT1C LTR MaLR -83 384 1 180 0 0 0 chr9 21817065 21817085 -96045542 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 228 229 0 0 chr9 21817100 21817148 -96045479 + L1MC4 LINE L1 6656 6703 -1339 273 57 0 0 chr9 21817152 21817187 -96045440 + (CA)n Simple_repeat Simple_repeat 2 36 0 12548 146 31 28 chr9 21817187 21819226 -96043401 + Ricksha_c DNA DNA 3 2046 0 238 293 0 13 chr9 21819227 21819302 -96043325 - MIR SINE MIR -182 80 7 285 284 173 31 chr9 21820223 21820326 -96042301 - MIR SINE MIR -33 229 142 2230 106 3 3 chr9 21820326 21820627 -96042000 - AluSx SINE Alu -11 301 1 285 284 173 31 chr9 21820627 21820685 -96041942 - MIR SINE MIR -120 142 45 515 237 38 8 chr9 21820771 21820902 -96041725 - MIR SINE MIR -29 233 99 360 285 88 22 chr9 21821840 21821977 -96040650 - MIR SINE MIR -115 147 2 240 254 28 0 chr9 21822142 21822213 -96040414 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1190 90 6 12 chr9 21822222 21822388 -96040239 - L1MA2 LINE L1 -4 6300 6136 22 0 0 0 chr9 21822832 21822854 -96039773 + AT_rich Low_complexity Low_complexity 1 22 0 350 203 239 22 chr9 21823418 21823556 -96039071 - L1ME4a LINE L1 0 6121 5954 6406 138 34 13 chr9 21823683 21824878 -96037749 - L1MC1 LINE L1 -13 6320 5102 526 293 114 21 chr9 21824888 21825178 -96037449 - L1ME4a LINE L1 -299 5822 5506 412 272 44 63 chr9 21826807 21826965 -96035662 - MIR SINE MIR -77 185 31 2221 102 7 0 chr9 21827209 21827503 -96035124 - AluSc SINE Alu -13 296 1 391 305 58 40 chr9 21827720 21827868 -96034759 - MIR SINE MIR -37 225 72 2395 137 40 13 chr9 21827868 21828248 -96034379 - MLT1B LTR MaLR 0 390 1 391 305 58 40 chr9 21828248 21828273 -96034354 - MIR SINE MIR -190 72 49 180 0 0 0 chr9 21828420 21828440 -96034187 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2214 97 0 3 chr9 21828787 21829075 -96033552 - AluSx SINE Alu -3 309 23 1346 241 96 7 chr9 21829088 21829516 -96033111 + MER113 DNA MER1_type? 6 471 -50 347 173 130 130 chr9 21830061 21830246 -96032381 + MER5A DNA MER1_type 4 188 -1 355 339 33 6 chr9 21830369 21830552 -96032075 + MIR SINE MIR 52 239 -23 548 283 80 26 chr9 21830563 21830935 -96031692 - L2 LINE L2 -6 3307 2874 200 265 48 24 chr9 21831565 21831648 -96030979 - MIR SINE MIR -70 192 108 445 200 19 90 chr9 21831881 21832036 -96030591 - MLT1D LTR MaLR -361 144 1 180 297 22 44 chr9 21832912 21833003 -96029624 - L2 LINE L2 -5 3267 3179 1550 294 93 47 chr9 21833719 21834820 -96027807 - L2 LINE L2 -1 3312 2158 300 322 67 38 chr9 21835181 21835600 -96027027 + L1MC/D LINE L1 3991 4421 -1725 533 281 122 50 chr9 21835647 21836533 -96026094 + L1MC/D LINE L1 4633 5615 -974 2377 92 0 3 chr9 21836533 21836839 -96025788 - AluY SINE Alu -6 305 1 533 281 122 50 chr9 21836839 21837032 -96025595 + L1MC/D LINE L1 5615 5793 -796 188 269 96 0 chr9 21837438 21837490 -96025137 + MIR SINE MIR 206 262 0 229 273 0 15 chr9 21837844 21837910 -96024717 + MLT1K LTR MaLR 182 246 -342 180 0 0 0 chr9 21838221 21838241 -96024386 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1021 201 159 70 chr9 21838529 21838926 -96023701 - MSTB1 LTR MaLR 0 432 1 1621 215 49 62 chr9 21838926 21839392 -96023235 - MLT1C LTR MaLR -7 460 1 488 281 75 26 chr9 21839446 21839880 -96022747 - LTR33A LTR ERVL -20 503 4 724 209 0 0 chr9 21840847 21840976 -96021651 - FRAM SINE Alu -19 157 29 192 271 0 21 chr9 21841666 21841714 -96020913 + L2 LINE L2 3267 3313 0 310 276 127 15 chr9 21842481 21842615 -96020012 - L2 LINE L2 -2 3270 3122 470 250 0 10 chr9 21845293 21845389 -96017238 - MER5B DNA MER1_type -16 162 68 1436 191 118 0 chr9 21846028 21846290 -96016337 + AluJb SINE Alu 1 293 -9 258 221 59 0 chr9 21848584 21848652 -96013975 - MIR SINE MIR -10 252 181 486 241 162 16 chr9 21848663 21848854 -96013773 + L2 LINE L2 2686 2904 -410 333 257 191 14 chr9 21848901 21849111 -96013516 + L2 LINE L2 3020 3266 -47 341 193 104 0 chr9 21849151 21849245 -96013382 - MIR SINE MIR -62 146 57 290 324 157 0 chr9 21849685 21849793 -96012834 + L2 LINE L2 3148 3272 0 2028 128 3 46 chr9 21850110 21850437 -96012190 + AluSq SINE Alu 1 313 0 1337 228 137 30 chr9 21850864 21850989 -96011638 + MLT1E LTR MaLR 70 180 -413 2356 92 0 0 chr9 21850989 21851284 -96011343 - AluSc SINE Alu -14 295 1 1337 228 137 30 chr9 21851284 21851631 -96010996 + MLT1E LTR MaLR 180 593 0 340 341 70 26 chr9 21851744 21852014 -96010613 + L2 LINE L2 2693 2974 -340 21 36 0 0 chr9 21854456 21854484 -96008143 + AT_rich Low_complexity Low_complexity 1 28 0 437 267 156 39 chr9 21854779 21855336 -96007291 + L1MC4 LINE L1 7301 8029 -13 22 0 0 0 chr9 21855336 21855358 -96007269 + AT_rich Low_complexity Low_complexity 1 22 0 307 265 17 77 chr9 21855912 21856029 -96006598 - MER5A DNA MER1_type -25 164 55 270 270 180 0 chr9 21856085 21856196 -96006431 + MER5B DNA MER1_type 9 139 -39 441 242 105 16 chr9 21856196 21856320 -96006307 + MER5B DNA MER1_type 13 147 -31 262 278 0 56 chr9 21856740 21856812 -96005815 + L2 LINE L2 3240 3307 -6 1924 218 64 15 chr9 21857052 21857230 -96005397 + MLT1D LTR MaLR 1 169 -336 1865 157 14 3 chr9 21857230 21857517 -96005110 + AluJo SINE Alu 7 296 -16 1924 218 64 15 chr9 21857517 21857819 -96004808 + MLT1D LTR MaLR 169 505 0 560 299 72 23 chr9 21858764 21858985 -96003642 - MIR SINE MIR -1 261 30 499 214 1 1 chr9 21859658 21859761 -96002866 + MER39 LTR ERV1 1 103 -439 2245 84 3 3 chr9 21859810 21860097 -96002530 + AluSq SINE Alu 2 288 -25 1488 188 116 8 chr9 21860097 21860458 -96002169 + MER39 LTR ERV1 308 707 0 517 231 0 0 chr9 21860572 21860676 -96001951 - MER94 DNA DNA -4 130 27 766 270 6 0 chr9 21860676 21860850 -96001777 + FAM SINE Alu 1 175 0 2359 80 0 10 chr9 21861011 21861323 -96001304 + AluY SINE Alu 1 309 -2 310 222 52 67 chr9 21861401 21861536 -96001091 + MER103 DNA DNA 19 151 -15 503 249 85 30 chr9 21861600 21861765 -96000862 - L2 LINE L2 -5 3308 3135 513 32 0 0 chr9 21862223 21862286 -96000341 + (CA)n Simple_repeat Simple_repeat 1 63 0 22 0 0 0 chr9 21864025 21864047 -95998580 + AT_rich Low_complexity Low_complexity 1 22 0 291 93 0 0 chr9 21864925 21864968 -95997659 + (TA)n Simple_repeat Simple_repeat 2 44 0 270 0 0 0 chr9 21865285 21865315 -95997312 + (A)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr9 21866477 21866502 -95996125 + AT_rich Low_complexity Low_complexity 1 25 0 186 71 0 0 chr9 21868480 21868508 -95994119 + (A)n Simple_repeat Simple_repeat 1 28 0 231 114 0 0 chr9 21869176 21869211 -95993416 + (A)n Simple_repeat Simple_repeat 1 35 0 404 259 38 8 chr9 21869228 21869359 -95993268 + L1ME3A LINE L1 5983 6117 -53 363 371 54 5 chr9 21869529 21869750 -95992877 - L1M4 LINE L1 -1991 4155 3924 268 348 35 30 chr9 21870486 21870687 -95991940 + MLT1J LTR MaLR 216 417 -94 200 184 0 0 chr9 21870919 21870957 -95991670 + (CA)n Simple_repeat Simple_repeat 1 38 0 319 318 45 32 chr9 21871223 21871414 -95991213 + MIR SINE MIR 20 208 -54 2666 23 0 0 chr9 21872415 21872717 -95989910 + AluYa5 SINE Alu 1 302 -9 189 0 0 0 chr9 21877197 21877218 -95985409 + (A)n Simple_repeat Simple_repeat 1 21 0 208 324 68 0 chr9 21878055 21878129 -95984498 + MIR SINE MIR 12 90 -172 192 351 0 0 chr9 21878137 21878194 -95984433 + MIR3 SINE MIR 137 193 -15 218 255 0 0 chr9 21880031 21880078 -95982549 + CT-rich Low_complexity Low_complexity 5 51 0 306 0 0 0 chr9 21880083 21880117 -95982510 + (CA)n Simple_repeat Simple_repeat 1 34 0 2317 70 33 7 chr9 21880976 21881277 -95981350 + AluSc SINE Alu 1 309 0 338 260 72 11 chr9 21882300 21882460 -95980167 - MIR SINE MIR 0 262 93 586 271 187 5 chr9 21883073 21883287 -95979340 - MIR SINE MIR -8 254 2 483 256 153 17 chr9 21884515 21884691 -95977936 - MIR SINE MIR -25 237 38 500 168 232 24 chr9 21884691 21884816 -95977811 - FRAM SINE Alu -18 158 8 363 200 0 0 chr9 21885087 21885152 -95977475 - MER2 DNA MER2_type -5 340 276 1413 152 123 29 chr9 21885156 21885432 -95977195 + AluJo SINE Alu 1 302 0 580 137 199 48 chr9 21885432 21885573 -95977054 + AluJo/FRAM SINE Alu 134 296 -16 1128 177 5 19 chr9 21885610 21885819 -95976808 - MER2 DNA MER2_type -139 206 1 289 250 57 93 chr9 21886402 21886542 -95976085 + MIR SINE MIR 115 249 -13 28 0 0 0 chr9 21887493 21887521 -95975106 + AT_rich Low_complexity Low_complexity 1 28 0 32 57 0 0 chr9 21887576 21887629 -95974998 + AT_rich Low_complexity Low_complexity 1 53 0 512 267 118 52 chr9 21888632 21889208 -95973419 + L1MEd LINE L1 613 1226 -4893 659 222 53 76 chr9 21889350 21889652 -95972975 - MER63 DNA MER1_type -1 1061 767 305 309 0 12 chr9 21890117 21890201 -95972426 - L2 LINE L2 -21 3251 3169 671 226 0 0 chr9 21890461 21890576 -95972051 + FLAM_A SINE Alu 1 115 -18 474 148 33 66 chr9 21890603 21890725 -95971902 - L1ME3 LINE L1 -6 6156 6039 22 35 0 0 chr9 21891524 21891553 -95971074 + AT_rich Low_complexity Low_complexity 1 29 0 1192 344 155 20 chr9 21891846 21892524 -95970103 - L3 LINE CR1 -372 1205 379 2121 98 4 7 chr9 21892524 21892798 -95969829 + AluSq SINE Alu 22 294 -19 1192 344 155 20 chr9 21892798 21893001 -95969626 - L3 LINE CR1 -1198 379 205 367 250 202 27 chr9 21895957 21896145 -95966482 - MIR SINE MIR -13 249 29 1215 182 105 0 chr9 21897738 21897996 -95964631 - AluJo SINE Alu -16 296 12 234 262 83 12 chr9 21898982 21899066 -95963561 - L2 LINE L2 -16 3297 3208 2129 217 75 70 chr9 21899428 21900351 -95962276 + L1MC5 LINE L1 6991 7917 -44 206 304 152 22 chr9 21900820 21900912 -95961715 + L2 LINE L2 3206 3309 -4 874 257 63 73 chr9 21901109 21901506 -95961121 - MLT1J LTR MaLR -114 397 5 244 261 117 27 chr9 21902775 21902886 -95959741 + MIR3 SINE MIR 88 208 0 1829 171 0 10 chr9 21903449 21903748 -95958879 - AluJb SINE Alu -14 298 3 1701 188 7 3 chr9 21904143 21904435 -95958192 - AluJo SINE Alu -19 293 1 26 0 0 0 chr9 21904593 21904619 -95958008 + AT_rich Low_complexity Low_complexity 1 26 0 231 227 61 61 chr9 21905127 21905193 -95957434 + MIR SINE MIR 23 88 -174 2218 126 0 0 chr9 21905459 21905768 -95956859 + AluSx SINE Alu 1 309 -3 628 150 0 26 chr9 21905775 21905888 -95956739 + FLAM_A SINE Alu 21 130 -12 703 251 31 26 chr9 21907299 21907494 -95955133 + MIR SINE MIR 49 244 -18 612 254 73 17 chr9 21909983 21910160 -95952467 - MIR SINE MIR -44 218 32 201 157 0 137 chr9 21910643 21910694 -95951933 - MIR3 SINE MIR -23 185 142 264 261 268 0 chr9 21911577 21911719 -95950908 + MER112 DNA MER1_type 69 248 -12 216 286 18 0 chr9 21912520 21912576 -95950051 + L3 LINE CR1 1519 1575 -2 410 217 9 9 chr9 21912772 21912878 -95949749 + L1MA10 LINE L1 6229 6334 0 1050 32 0 0 chr9 21913906 21914032 -95948595 + (CTG)n Simple_repeat Simple_repeat 1 126 0 192 353 87 17 chr9 21914492 21914665 -95947962 - L2 LINE L2 -237 3035 2851 24 0 0 0 chr9 21916441 21916465 -95946162 + AT_rich Low_complexity Low_complexity 1 24 0 211 28 56 0 chr9 21916806 21916842 -95945785 + (TA)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr9 21921027 21921049 -95941578 + (A)n Simple_repeat Simple_repeat 1 22 0 206 324 68 0 chr9 21921885 21921959 -95940668 + MIR SINE MIR 12 90 -172 192 351 0 0 chr9 21921967 21922024 -95940603 + MIR3 SINE MIR 137 193 -15 218 255 0 0 chr9 21923861 21923908 -95938719 + CT-rich Low_complexity Low_complexity 5 51 0 306 0 0 0 chr9 21923913 21923947 -95938680 + (CA)n Simple_repeat Simple_repeat 1 34 0 2321 66 33 7 chr9 21924806 21925107 -95937520 + AluSc SINE Alu 1 309 0 340 260 72 11 chr9 21926129 21926289 -95936338 - MIR SINE MIR 0 262 93 579 271 187 5 chr9 21926902 21927116 -95935511 - MIR SINE MIR -8 254 2 198 0 0 0 chr9 21928638 21928660 -95933967 + (T)n Simple_repeat Simple_repeat 1 22 0 1697 102 8 43 chr9 21931255 21931546 -95931081 - AluY SINE Alu 0 315 34 629 56 34 0 chr9 21931976 21931992 -95930635 + L1P LINE L1 5332 5346 -826 5753 50 10 1 chr9 21931992 21932714 -95929913 - L1PA7 LINE L1 -11 6143 5416 629 56 34 0 chr9 21932714 21932786 -95929841 + L1P LINE L1 5346 5423 -749 191 313 26 70 chr9 21933268 21933383 -95929244 + L2 LINE L2 3136 3245 -27 520 171 45 96 chr9 21934896 21935095 -95927532 - MER5A DNA MER1_type 0 189 1 213 284 68 26 chr9 21935163 21935258 -95927369 - MER5A DNA MER1_type -79 110 1 14638 119 30 12 chr9 21936095 21936448 -95926179 + Tigger1 DNA MER2_type 108 453 -1965 2169 118 0 0 chr9 21936448 21936737 -95925890 - AluSq SINE Alu -19 294 6 14638 119 30 12 chr9 21936737 21938324 -95924303 + Tigger1 DNA MER2_type 453 2097 -321 2162 70 32 64 chr9 21938324 21938638 -95923989 - AluY SINE Alu -7 304 1 14638 119 30 12 chr9 21938638 21938965 -95923662 + Tigger1 DNA MER2_type 2097 2417 -1 1878 164 0 3 chr9 21940031 21940323 -95922304 + AluJo SINE Alu 1 291 -21 1557 203 54 41 chr9 21940744 21941106 -95921521 + MLT1A2 LTR MaLR 12 374 0 264 269 168 34 chr9 21941128 21941247 -95921380 - MIR3 SINE MIR -66 142 8 2488 65 0 3 chr9 21941526 21941836 -95920791 - AluY SINE Alu 0 311 3 192 405 33 8 chr9 21942559 21942680 -95919947 - L3b LINE CR1 -282 1301 1178 235 201 13 141 chr9 21944032 21944181 -95918446 + Charlie7 DNA MER1_type 2433 2562 -50 23 68 0 0 chr9 21947557 21947601 -95915026 + AT_rich Low_complexity Low_complexity 1 44 0 624 293 74 33 chr9 21949320 21949562 -95913065 + MIR SINE MIR 11 262 0 21 36 0 0 chr9 21949574 21949602 -95913025 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr9 21950984 21951009 -95911618 + AT_rich Low_complexity Low_complexity 1 25 0 225 169 60 60 chr9 21951356 21951439 -95911188 + L1ME4a LINE L1 6014 6096 -25 1042 220 13 47 chr9 21953024 21953256 -95909371 - MER58A DNA MER1_type 0 224 1 2213 92 0 0 chr9 21954237 21954530 -95908097 + AluY SINE Alu 1 293 -18 1968 208 13 31 chr9 21954963 21955420 -95907207 + L1MB8 LINE L1 5662 6110 -68 1523 199 3 18 chr9 21955425 21955707 -95906920 + AluJo SINE Alu 3 280 -32 206 167 0 48 chr9 21955708 21955750 -95906877 + GA-rich Low_complexity Low_complexity 1 40 0 312 354 0 10 chr9 21956418 21956517 -95906110 - L2 LINE L2 -21 3251 3154 649 226 0 0 chr9 21956762 21956877 -95905750 + FLAM_A SINE Alu 1 115 -18 514 148 33 66 chr9 21956904 21957026 -95905601 - L1ME3 LINE L1 -6 6156 6039 628 275 175 30 chr9 21957422 21958604 -95904023 + L1ME LINE L1 4272 5648 -514 686 261 27 21 chr9 21958612 21958800 -95903827 + MER5A DNA MER1_type 1 189 0 480 222 7 85 chr9 21958902 21959055 -95903572 - MER112 DNA MER1_type -119 141 1 21 0 0 0 chr9 21959677 21959698 -95902929 + AT_rich Low_complexity Low_complexity 1 21 0 313 206 10 98 chr9 21960244 21960346 -95902281 + L2 LINE L2 3221 3313 0 218 309 179 0 chr9 21960346 21960430 -95902197 - L2 LINE L2 -17 3296 3198 901 188 152 0 chr9 21960563 21960813 -95901814 + L1MC4 LINE L1 6801 7088 -954 2177 210 98 37 chr9 21960816 21961237 -95901390 + L1MC4 LINE L1 7241 7714 -328 2200 109 0 26 chr9 21961237 21961550 -95901077 + AluSc SINE Alu 1 305 -4 2177 210 98 37 chr9 21961550 21961753 -95900874 + L1MC4 LINE L1 7714 7903 -139 838 152 0 0 chr9 21962614 21962746 -95899881 - FLAM_A SINE Alu 0 133 2 228 325 25 0 chr9 21964119 21964199 -95898428 + MIR3 SINE MIR 118 199 -9 612 292 32 9 chr9 21964297 21964513 -95898114 - MIR SINE MIR -37 225 5 200 267 13 53 chr9 21964851 21964926 -95897701 - L2 LINE L2 -1115 2199 2128 312 347 25 0 chr9 21965670 21965791 -95896836 + MER91A DNA MER1_type 2 125 -71 1406 175 48 26 chr9 21965826 21965989 -95896638 - AluJo SINE Alu -22 290 117 249 33 0 0 chr9 21965989 21966019 -95896608 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1406 175 48 26 chr9 21966019 21966123 -95896504 - AluJo SINE Alu -195 117 17 1943 151 3 6 chr9 21966477 21966788 -95895839 + AluSx SINE Alu 1 310 -2 979 277 92 9 chr9 21969504 21969840 -95892787 + L1MC/D LINE L1 5352 5715 -2093 354 169 0 0 chr9 21970494 21970559 -95892068 + GA-rich Low_complexity Low_complexity 2 66 0 252 336 39 10 chr9 21971211 21971315 -95891312 - MIR SINE MIR -91 171 65 34 55 0 0 chr9 21971869 21971924 -95890703 + AT_rich Low_complexity Low_complexity 1 55 0 1981 151 3 0 chr9 21971995 21972294 -95890333 + AluJb SINE Alu 1 300 -12 838 207 56 61 chr9 21972297 21972510 -95890117 + AluJb SINE Alu 84 295 -17 21 0 0 0 chr9 21974986 21975007 -95887620 + AT_rich Low_complexity Low_complexity 1 21 0 204 281 53 0 chr9 21975347 21975404 -95887223 - L2 LINE L2 -3 3310 3251 347 274 18 53 chr9 21975682 21975795 -95886832 + MIR SINE MIR 32 140 -122 774 251 18 6 chr9 21977172 21977343 -95885284 + MER5A DNA MER1_type 17 189 0 242 295 0 0 chr9 21978912 21978973 -95883654 - MARNA DNA Mariner -348 238 178 505 163 0 31 chr9 21980256 21980354 -95882273 - FRAM SINE Alu -8 168 74 29 0 0 0 chr9 21981770 21981799 -95880828 + AT_rich Low_complexity Low_complexity 1 29 0 218 280 80 30 chr9 21981816 21981916 -95880711 + MIR3 SINE MIR 81 185 -23 378 275 55 0 chr9 21982525 21982616 -95880011 + L2 LINE L2 3156 3251 -21 354 315 75 7 chr9 21982835 21982981 -95879646 + MIR3 SINE MIR 10 165 -43 218 195 24 0 chr9 21983022 21983063 -95879564 + GA-rich Low_complexity Low_complexity 5 46 0 261 314 25 50 chr9 21983736 21983857 -95878770 + MIR3 SINE MIR 15 132 -76 346 217 0 54 chr9 21985679 21985773 -95876854 - MER2 DNA MER2_type -152 87 1 1439 187 85 36 chr9 21986341 21986765 -95875862 + LTR54 LTR ERV1 1 510 0 1703 144 31 24 chr9 21987441 21987732 -95874895 - AluJo SINE Alu -19 293 1 264 269 74 57 chr9 21987811 21987898 -95874729 - MER104 DNA Tc2 -1718 180 96 2392 74 0 13 chr9 21987898 21988210 -95874417 - AluY SINE Alu -3 308 1 264 269 74 57 chr9 21988210 21988297 -95874330 - MER104 DNA Tc2 -1802 96 3 213 389 71 0 chr9 21988880 21989006 -95873621 + L2 LINE L2 3137 3271 -1 2302 103 3 0 chr9 21989176 21989488 -95873139 - AluSq SINE Alu 0 313 1 219 69 0 0 chr9 21989945 21989974 -95872653 + (TG)n Simple_repeat Simple_repeat 1 29 0 225 312 85 7 chr9 21990555 21990696 -95871931 + L1M4 LINE L1 4457 4608 -1538 21 0 0 0 chr9 21992256 21992277 -95870350 + AT_rich Low_complexity Low_complexity 1 21 0 1088 220 4 4 chr9 21992351 21992592 -95870035 + L1MB3 LINE L1 5941 6181 -2 1829 220 95 52 chr9 21994337 21994897 -95867730 + MLT1E2 LTR MaLR 3 587 -38 246 370 68 52 chr9 21996344 21996948 -95865679 + L2 LINE L2 2659 3270 -2 344 366 147 35 chr9 21997398 21998436 -95864191 + L2 LINE L2 2005 3145 -127 720 258 30 5 chr9 21998505 21998703 -95863924 + L1MB1 LINE L1 5539 5741 -380 2392 97 62 3 chr9 21999824 22000176 -95862451 + THE1C LTR MaLR 1 373 -2 1269 179 20 77 chr9 22000363 22000660 -95861967 + L1MB1 LINE L1 5878 6157 -11 1900 149 7 7 chr9 22000910 22001206 -95861421 + AluJb SINE Alu 1 296 -16 243 218 0 0 chr9 22001864 22001919 -95860708 + (TG)n Simple_repeat Simple_repeat 1 55 0 741 189 37 20 chr9 22002467 22002678 -95859949 + L1M4 LINE L1 5313 5527 -634 181 297 40 27 chr9 22002888 22002962 -95859665 + MIR SINE MIR 9 83 -179 565 274 91 11 chr9 22003051 22003226 -95859401 - MER5A DNA MER1_type 0 189 1 624 266 40 17 chr9 22003347 22003524 -95859103 - MIR SINE MIR -1 261 81 2323 93 0 22 chr9 22003559 22003870 -95858757 - AluSx SINE Alu -8 304 1 2433 81 3 3 chr9 22004870 22005180 -95857447 - AluSp SINE Alu -3 310 1 202 393 25 8 chr9 22005985 22006107 -95856520 + MIR3 SINE MIR 41 164 -44 1420 201 113 9 chr9 22006107 22006426 -95856201 + MLT1A1 LTR MaLR 2 353 -12 28 61 0 0 chr9 22009196 22009245 -95853382 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr9 22011626 22011651 -95850976 + AT_rich Low_complexity Low_complexity 1 25 0 29 84 0 0 chr9 22011801 22011872 -95850755 + AT_rich Low_complexity Low_complexity 1 71 0 338 278 41 125 chr9 22011982 22012302 -95850325 - L2 LINE L2 -30 3283 2991 23 54 0 0 chr9 22013156 22013193 -95849434 + AT_rich Low_complexity Low_complexity 1 37 0 1201 167 21 13 chr9 22013740 22013974 -95848653 - MER46A DNA MER2_type 0 236 1 695 177 8 23 chr9 22014779 22014909 -95847718 - FLAM_A SINE Alu -5 128 1 2305 104 0 0 chr9 22014928 22015237 -95847390 + AluSc SINE Alu 1 309 0 259 330 239 6 chr9 22015612 22015788 -95846839 + MIR SINE MIR 8 224 -38 263 299 167 14 chr9 22016246 22016390 -95846237 + MIR3 SINE MIR 35 200 -8 818 130 22 58 chr9 22017932 22018070 -95844557 - AluSq/x SINE Alu -179 133 1 482 266 65 19 chr9 22018210 22018364 -95844263 + MER5A DNA MER1_type 29 189 0 21 0 0 0 chr9 22018780 22018801 -95843826 + AT_rich Low_complexity Low_complexity 1 21 0 290 309 24 71 chr9 22019496 22019664 -95842963 + MIR3 SINE MIR 16 175 -33 357 340 95 57 chr9 22020049 22020364 -95842263 - L2 LINE L2 -2 3270 2944 25 31 0 0 chr9 22020373 22020405 -95842222 + AT_rich Low_complexity Low_complexity 1 32 0 1009 134 17 6 chr9 22020405 22020584 -95842043 - L1MA4A LINE L1 -1 6302 6122 22 56 0 0 chr9 22021660 22021696 -95840931 + AT_rich Low_complexity Low_complexity 1 36 0 984 111 0 0 chr9 22025546 22025726 -95836901 + (TA)n Simple_repeat Simple_repeat 1 180 0 917 123 0 0 chr9 22025786 22025908 -95836719 + AluSq/x SINE Alu 1 122 -190 340 374 72 0 chr9 22026171 22026310 -95836317 + L2 LINE L2 3122 3270 -2 216 0 0 0 chr9 22026934 22026958 -95835669 + (A)n Simple_repeat Simple_repeat 1 24 0 794 232 127 9 chr9 22028687 22028907 -95833720 - MIR SINE MIR -3 259 14 290 167 0 0 chr9 22029033 22029081 -95833546 - Charlie5 DNA MER1_type -304 2308 2261 21 36 0 0 chr9 22029143 22029171 -95833456 + AT_rich Low_complexity Low_complexity 1 28 0 11692 132 36 19 chr9 22029262 22029837 -95832790 - Tigger1 DNA MER2_type 0 2418 1854 1734 136 176 24 chr9 22029837 22030206 -95832421 - MSTA LTR MaLR -3 425 1 9193 126 22 59 chr9 22030206 22031844 -95830783 - MSTA-int LTR MaLR 0 1580 3 1613 175 73 17 chr9 22031846 22032201 -95830426 - THE1C LTR MaLR 0 375 1 11692 132 36 19 chr9 22032201 22032725 -95829902 - Tigger1 DNA MER2_type -564 1854 1341 2726 20 0 0 chr9 22032725 22033024 -95829603 - AluYb8 SINE Alu -7 311 13 11692 132 36 19 chr9 22033024 22033868 -95828759 - Tigger1 DNA MER2_type -1077 1341 436 501 175 21 10 chr9 22033877 22033974 -95828653 - Tigger1 DNA MER2_type -2134 284 187 780 266 0 0 chr9 22033974 22034151 -95828476 + FRAM SINE Alu 1 169 -7 545 115 9 26 chr9 22034151 22034264 -95828363 + (GGA)n Simple_repeat Simple_repeat 1 111 0 1057 190 0 0 chr9 22034264 22034443 -95828184 - Tigger1 DNA MER2_type -2232 186 8 1392 257 125 11 chr9 22034459 22034906 -95827721 + L1MB2 LINE L1 4758 5255 -891 3757 189 30 42 chr9 22034910 22035292 -95827335 + L1MB2 LINE L1 5330 5715 -456 1566 173 19 38 chr9 22035292 22035610 -95827017 + AluJo SINE Alu 1 312 0 3757 189 30 42 chr9 22035610 22036079 -95826548 + L1MB2 LINE L1 5715 6171 0 1262 206 33 49 chr9 22036225 22036531 -95826096 + AluJo SINE Alu 3 303 -9 237 278 14 0 chr9 22036705 22036777 -95825850 - MER3 DNA MER1_type 0 2624 2552 1278 195 0 27 chr9 22036792 22037049 -95825578 + AluJo SINE Alu 50 299 -13 2203 112 6 56 chr9 22037072 22037429 -95825198 + LTR32 LTR ERVL 14 352 -119 935 162 13 0 chr9 22037428 22037582 -95825045 + LTR32 LTR ERVL 316 471 0 * 887 159 0 0 chr9 22037688 22037820 -95824807 - AluJb SINE Alu -180 132 1 2317 93 3 3 chr9 22037848 22038149 -95824478 + AluSq SINE Alu 1 301 -12 1501 224 0 3 chr9 22038164 22038458 -95824169 + AluJo SINE Alu 10 302 -10 910 146 12 12 chr9 22038461 22038625 -95824002 - MER3 DNA MER1_type 0 2402 2239 525 183 67 0 chr9 22038632 22038736 -95823891 - MER3 DNA MER1_type -47 162 52 1651 168 24 3 chr9 22039310 22039601 -95823026 - AluJb SINE Alu -15 297 1 762 239 52 20 chr9 22039921 22040172 -95822455 - MIR SINE MIR 0 262 4 1326 176 134 8 chr9 22040924 22041185 -95821442 - AluJb SINE Alu -18 294 1 1774 169 3 29 chr9 22041236 22041550 -95821077 - AluJo SINE Alu -6 306 1 228 67 0 0 chr9 22042995 22043025 -95819602 + (TTG)n Simple_repeat Simple_repeat 1 30 0 216 250 156 0 chr9 22043887 22043951 -95818676 - L2 LINE L2 -37 3276 3203 21 36 0 0 chr9 22045462 22045490 -95817137 + AT_rich Low_complexity Low_complexity 1 28 0 665 153 76 17 chr9 22045813 22045931 -95816696 - FLAM_C SINE Alu -6 127 3 646 235 126 36 chr9 22046311 22046588 -95816039 + Charlie2 DNA MER1_type 1884 2185 -677 802 221 117 53 chr9 22046651 22046889 -95815738 + Charlie2 DNA MER1_type 2268 2489 -373 2040 117 0 0 chr9 22046889 22047193 -95815434 + AluSg SINE Alu 1 304 0 802 221 117 53 chr9 22047193 22047424 -95815203 + Charlie2 DNA MER1_type 2489 2768 -94 714 257 72 50 chr9 22047735 22047957 -95814670 + MIR SINE MIR 2 228 -34 3617 73 2 2 chr9 22048596 22049074 -95813553 + L1PA13 LINE L1 5686 6163 0 332 341 35 18 chr9 22049359 22049529 -95813098 - L2 LINE L2 -211 3061 2889 23 0 0 0 chr9 22049719 22049742 -95812885 + AT_rich Low_complexity Low_complexity 1 23 0 2010 145 3 7 chr9 22049766 22050076 -95812551 - AluSx SINE Alu -3 309 1 309 51 0 0 chr9 22050152 22050191 -95812436 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 29 0 0 chr9 22050990 22051025 -95811602 + AT_rich Low_complexity Low_complexity 1 35 0 283 200 133 0 chr9 22051400 22051490 -95811137 + L1MC1 LINE L1 5174 5275 -871 923 154 0 7 chr9 22051527 22051697 -95810930 + AluJb SINE Alu 144 312 0 5180 119 28 41 chr9 22051705 22052393 -95810234 + L1MC1 LINE L1 5262 5958 -2037 1833 162 3 7 chr9 22052393 22052689 -95809938 + AluJb SINE Alu 1 295 -17 5180 119 28 41 chr9 22052689 22053006 -95809621 + L1MC1 LINE L1 5958 7984 -11 290 175 35 0 chr9 22053253 22053310 -95809317 - FLAM SINE Alu -21 112 54 24 32 0 0 chr9 22053319 22053350 -95809277 + AT_rich Low_complexity Low_complexity 1 31 0 242 314 12 17 chr9 22053722 22053828 -95808799 + GA-rich Low_complexity Low_complexity 4 174 0 180 0 0 0 chr9 22053832 22053852 -95808775 + (A)n Simple_repeat Simple_repeat 1 20 0 2100 123 10 0 chr9 22053920 22054220 -95808407 + AluSx SINE Alu 1 303 -9 1842 240 132 51 chr9 22054913 22055739 -95806888 - L1ME3A LINE L1 -24 6146 5254 188 319 167 22 chr9 22056183 22056321 -95806306 - MIR3 SINE MIR -46 162 5 351 303 7 13 chr9 22056678 22056830 -95805797 - Tigger8 DNA MER2_type -83 583 433 593 259 127 95 chr9 22056930 22057227 -95805400 - Tigger8 DNA MER2_type -209 457 140 1627 193 103 44 chr9 22057227 22057704 -95804923 - MLT1D LTR MaLR 0 505 1 593 259 127 95 chr9 22057704 22057847 -95804780 - Tigger8 DNA MER2_type -526 140 3 522 280 34 23 chr9 22057889 22058064 -95804563 - MER5B DNA MER1_type 0 178 2 600 160 56 24 chr9 22058565 22058690 -95803937 - FLAM_C SINE Alu 0 133 5 1354 156 9 9 chr9 22059543 22059761 -95802866 - AluSx SINE Alu -93 219 2 2076 131 0 3 chr9 22059970 22060267 -95802360 - AluSx SINE Alu -16 296 1 22 0 0 0 chr9 22060589 22060611 -95802016 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 22060701 22060745 -95801882 + AT_rich Low_complexity Low_complexity 1 44 0 331 244 124 62 chr9 22061086 22061360 -95801267 - L1ME4a LINE L1 -15 6106 5816 24 32 0 0 chr9 22062194 22062225 -95800402 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 22062230 22062254 -95800373 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 3113 128 47 4 chr9 22062290 22062805 -95799822 + L1MA9 LINE L1 5545 6081 -231 470 175 78 0 chr9 22062807 22062910 -95799717 + L1MA9 LINE L1 6180 6290 -22 2120 109 7 13 chr9 22063438 22063775 -95798852 + AluY SINE Alu 1 311 0 1981 119 14 57 chr9 22063862 22064214 -95798413 + MER1B DNA MER1_type 1 337 0 306 0 0 0 chr9 22065005 22065039 -95797588 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr9 22067986 22068008 -95794619 + AT_rich Low_complexity Low_complexity 1 22 0 184 308 178 9 chr9 22068017 22068124 -95794503 + MIR SINE MIR 66 190 -72 360 261 139 57 chr9 22068126 22068366 -95794261 + L1MC4a LINE L1 5084 5342 -804 450 292 71 56 chr9 22068367 22068453 -95794174 + L1MC4a LINE L1 5355 5438 -683 2332 96 0 3 chr9 22068453 22068755 -95793872 + AluSg SINE Alu 2 302 -8 450 292 71 56 chr9 22068755 22069181 -95793446 + L1MC4a LINE L1 5438 5824 -297 32 43 0 0 chr9 22069210 22069256 -95793371 + AT_rich Low_complexity Low_complexity 1 46 0 502 146 104 0 chr9 22069695 22069791 -95792836 + FAM SINE Alu 38 143 -42 266 203 0 14 chr9 22069829 22069903 -95792724 + (CA)n Simple_repeat Simple_repeat 1 73 0 315 235 12 24 chr9 22069988 22070073 -95792554 - MER117 DNA MER1_type -46 151 68 648 217 174 0 chr9 22070498 22070659 -95791968 + MER5A DNA MER1_type 1 189 0 4540 167 61 6 chr9 22071137 22071988 -95790639 + MER54A LTR ERVL 1 898 -3 1349 197 73 15 chr9 22072068 22072535 -95790092 - HERVL74 LTR ERVL -544 5141 4589 519 207 43 17 chr9 22072531 22072647 -95789980 - HERVL74 LTR ERVL -1670 4015 3897 * 1045 220 9 31 chr9 22072642 22073061 -95789566 - HERVL74 LTR ERVL -2034 3651 2983 2345 85 0 3 chr9 22073061 22073367 -95789260 - AluSg SINE Alu -5 305 1 1045 220 9 31 chr9 22073367 22073489 -95789138 - HERVL74 LTR ERVL -2702 2983 2860 228 209 0 60 chr9 22073576 22073643 -95788984 - MER107 DNA MER1_type -64 133 71 2789 204 55 101 chr9 22075403 22075547 -95787080 + L1MC4a LINE L1 6611 6760 -1048 333 102 0 0 chr9 22075547 22075596 -95787031 + AluSc SINE Alu 250 298 -1 2789 204 55 101 chr9 22075596 22075676 -95786951 + L1MC4a LINE L1 6760 6842 -966 2050 135 3 7 chr9 22075676 22075980 -95786647 + AluSq SINE Alu 1 303 -10 2789 204 55 101 chr9 22075980 22076179 -95786448 + L1MC4a LINE L1 6842 7049 -759 2108 83 3 28 chr9 22076179 22076496 -95786131 + AluSx SINE Alu 1 310 0 2789 204 55 101 chr9 22076496 22077057 -95785570 + L1MC4a LINE L1 7049 7590 -218 969 191 43 47 chr9 22077265 22077521 -95785106 + L1MD3 LINE L1 7737 7991 -4 2762 82 0 0 chr9 22077670 22078035 -95784592 + L1P4 LINE L1 5344 5708 -460 453 219 188 31 chr9 22079244 22079404 -95783223 + MER5A DNA MER1_type 4 188 -1 487 192 54 69 chr9 22080614 22080744 -95781883 + MLT2E LTR ERVL 1 128 -500 483 265 22 7 chr9 22080944 22081080 -95781547 + MLT2E LTR ERVL 488 625 -3 494 191 52 15 chr9 22081288 22081306 -95781321 - L1MA10 LINE L1 -13 6321 6304 2873 216 46 60 chr9 22081306 22081952 -95780675 - L1ME1 LINE L1 -27 6139 5486 2042 131 3 22 chr9 22081952 22082266 -95780361 + AluSx SINE Alu 5 312 0 2873 216 46 60 chr9 22082266 22082532 -95780095 - L1ME1 LINE L1 -680 5486 5253 1508 76 49 18 chr9 22082532 22082755 -95779872 - MER30 DNA MER1_type 0 230 1 2873 216 46 60 chr9 22082755 22082851 -95779776 - L1ME1 LINE L1 -913 5253 5157 1835 197 55 20 chr9 22082899 22083350 -95779277 - MLT1C LTR MaLR 0 467 1 584 163 0 0 chr9 22083397 22083489 -95779138 + L1MC1 LINE L1 6224 6315 -18 681 198 0 0 chr9 22083802 22083918 -95778709 + FLAM_A SINE Alu 11 126 -16 956 265 159 51 chr9 22084044 22084584 -95778043 - MLT1G1 LTR MaLR 0 555 1 183 129 0 0 chr9 22085014 22085045 -95777582 + (CA)n Simple_repeat Simple_repeat 2 32 0 290 355 32 79 chr9 22085275 22085464 -95777163 - L2 LINE L2 -11 3261 3082 2851 22 0 0 chr9 22085478 22085795 -95776832 + AluYb8 SINE Alu 1 317 -1 2144 125 0 0 chr9 22085807 22086102 -95776525 + AluSq SINE Alu 1 295 -18 6331 144 22 27 chr9 22086445 22086467 -95776160 + L1MA8 LINE L1 4208 4229 -2062 1919 157 58 0 chr9 22086467 22086792 -95775835 - MER2 DNA MER2_type 0 344 1 6331 144 22 27 chr9 22086792 22088359 -95774268 + L1MA8 LINE L1 4229 5784 -507 207 0 0 0 chr9 22088359 22088382 -95774245 + (TG)n Simple_repeat Simple_repeat 2 24 0 6331 144 22 27 chr9 22088382 22088885 -95773742 + L1MA8 LINE L1 5784 6288 -3 1824 116 116 0 chr9 22090072 22090349 -95772278 - AluSx SINE Alu -3 309 1 2233 131 29 39 chr9 22091562 22091696 -95770931 + L1MA7 LINE L1 5182 5316 -975 1931 62 0 0 chr9 22091696 22091938 -95770689 - L1PA7 LINE L1 -6 6148 5907 2233 131 29 39 chr9 22091938 22092738 -95769889 + L1MA7 LINE L1 5316 6276 -15 23 24 0 24 chr9 22092738 22092761 -95769866 + AT_rich Low_complexity Low_complexity 1 24 -16 2039 139 0 0 chr9 22092761 22093049 -95769578 + AluSx SINE Alu 1 288 -24 23 24 0 24 chr9 22093049 22093066 -95769561 + AT_rich Low_complexity Low_complexity 24 40 0 1846 167 13 3 chr9 22093376 22093729 -95768898 - AluJb SINE Alu 0 356 1 368 218 81 40 chr9 22094033 22094157 -95768470 - MIR SINE MIR -43 219 91 728 230 43 59 chr9 22094281 22094468 -95768159 - MER5A DNA MER1_type -5 184 1 5855 137 25 21 chr9 22094638 22095617 -95767010 - Tigger1 DNA MER2_type 0 2418 1436 396 90 0 45 chr9 22095620 22095687 -95766940 + Tigger1 DNA MER2_type 2175 2238 -180 8927 118 56 10 chr9 22095746 22097109 -95765518 - Tigger1 DNA MER2_type -942 1476 44 683 225 0 0 chr9 22097109 22097229 -95765398 + FLAM_A SINE Alu 1 120 -13 8927 118 56 10 chr9 22097229 22097276 -95765351 - Tigger1 DNA MER2_type -2374 44 1 752 185 15 0 chr9 22098645 22098775 -95763852 + FLAM_C SINE Alu 1 132 -1 601 202 0 8 chr9 22098830 22098954 -95763673 + Charlie5 DNA MER1_type 1 123 -2489 937 186 54 18 chr9 22098959 22099264 -95763363 + Charlie5 DNA MER1_type 2245 2624 0 1230 183 29 77 chr9 22099329 22099641 -95762986 + AluJo SINE Alu 1 297 -15 33 0 0 0 chr9 22102228 22102261 -95760366 + AT_rich Low_complexity Low_complexity 1 33 0 5478 149 27 33 chr9 22102295 22102787 -95759840 - L1MC2 LINE L1 -1 6343 5850 2526 95 11 20 chr9 22102787 22103145 -95759482 - THE1A LTR MaLR 0 355 1 11229 92 23 3 chr9 22103145 22104693 -95757934 - THE1A-int LTR MaLR 0 1580 1 2543 91 3 22 chr9 22104693 22105055 -95757572 - THE1A LTR MaLR 0 355 1 5478 149 27 33 chr9 22105055 22105305 -95757322 - L1MC2 LINE L1 -492 5852 5602 932 194 52 157 chr9 22105305 22105707 -95756920 - MLT1A1 LTR MaLR -4 361 2 5478 149 27 33 chr9 22105707 22105969 -95756658 - L1MC2 LINE L1 -742 5602 5342 210 211 53 79 chr9 22106000 22106076 -95756551 + MER5A DNA MER1_type 14 87 -102 1619 191 13 20 chr9 22106285 22106583 -95756044 + AluJo SINE Alu 1 296 -16 231 319 22 95 chr9 22107548 22107721 -95754906 - MIR3 SINE MIR -47 161 33 5649 130 263 0 chr9 22107866 22108818 -95753809 - L1PA3 LINE L1 -768 5378 4177 6729 20 1 0 chr9 22108818 22109597 -95753030 + L1PA3 LINE L1 5372 6155 0 2158 92 0 0 chr9 22109713 22109986 -95752641 - AluSg SINE Alu -15 295 23 1571 148 38 98 chr9 22110329 22110728 -95751899 + THE1C LTR MaLR 1 375 0 1380 218 0 45 chr9 22110737 22111049 -95751578 - AluJo SINE Alu -14 298 1 212 351 33 19 chr9 22111273 22111385 -95751242 - MER5A DNA MER1_type -18 160 48 559 160 43 0 chr9 22111882 22111976 -95750651 + FLAM_A SINE Alu 1 98 -44 27 0 0 0 chr9 22111977 22112004 -95750623 + AT_rich Low_complexity Low_complexity 1 27 0 1870 130 77 64 chr9 22112275 22112652 -95749975 - MLT1B LTR MaLR -8 382 1 6088 100 34 18 chr9 22113280 22113941 -95748686 + MER41B-int LTR ERV1 5020 5702 -244 2214 114 3 3 chr9 22113941 22114240 -95748387 - AluSx SINE Alu -13 299 1 6088 100 34 18 chr9 22114240 22114490 -95748137 + MER41B-int LTR ERV1 5702 5946 0 3622 126 0 18 chr9 22114490 22115047 -95747580 + MER41B LTR ERV1 1 547 -88 1573 181 0 44 chr9 22115075 22115395 -95747232 + AluJb SINE Alu 2 307 -5 31 26 0 0 chr9 22115412 22115450 -95747177 + AT_rich Low_complexity Low_complexity 1 38 0 698 186 83 6 chr9 22115872 22116028 -95746599 + MER3 DNA MER1_type 40 207 -2 2032 117 3 24 chr9 22116407 22116705 -95745922 + AluSx SINE Alu 1 292 -20 1721 173 43 23 chr9 22116768 22117167 -95745460 - L1M4 LINE L1 -1469 4677 4271 224 276 41 41 chr9 22117167 22117265 -95745362 + MIR SINE MIR 141 238 -24 2300 96 0 3 chr9 22119024 22119326 -95743301 + AluSc SINE Alu 1 301 -8 247 273 0 30 chr9 22119627 22119693 -95742934 + MIR3 SINE MIR 12 75 -133 352 227 209 0 chr9 22119700 22119810 -95742817 + MER94 DNA DNA 2 134 0 209 207 57 0 chr9 22119825 22119885 -95742742 + MIR SINE MIR 87 150 -58 213 65 0 0 chr9 22120125 22120156 -95742471 + (A)n Simple_repeat Simple_repeat 1 31 0 349 324 90 0 chr9 22120297 22120408 -95742219 + L2 LINE L2 3150 3270 -2 374 56 0 19 chr9 22122767 22122821 -95739806 + (CA)n Simple_repeat Simple_repeat 2 54 0 26 0 0 0 chr9 22125385 22125411 -95737216 + AT_rich Low_complexity Low_complexity 1 26 0 22 70 0 0 chr9 22127240 22127283 -95735344 + AT_rich Low_complexity Low_complexity 1 43 0 259 259 71 62 chr9 22132204 22132316 -95730311 + MIR3 SINE MIR 75 187 -21 311 297 117 58 chr9 22132596 22133185 -95729442 + L1ME3 LINE L1 5273 5896 -266 676 145 26 0 chr9 22133196 22133313 -95729314 + L1MB7 LINE L1 6046 6165 -19 22 0 0 0 chr9 22133597 22133619 -95729008 + AT_rich Low_complexity Low_complexity 1 22 0 584 298 24 0 chr9 22133791 22133999 -95728628 + L1ME LINE L1 5533 5745 -376 2254 87 3 0 chr9 22134122 22134408 -95728219 + AluSq SINE Alu 1 287 -26 273 128 0 0 chr9 22134415 22134462 -95728165 + (GGGA)n Simple_repeat Simple_repeat 4 50 0 202 102 0 122 chr9 22134465 22134514 -95728113 + L2 LINE L2 3271 3313 0 1519 178 3 60 chr9 22135070 22135401 -95727226 + AluJb SINE Alu 1 312 0 361 195 138 98 chr9 22135573 22135640 -95726987 - MIR SINE MIR 0 262 199 1561 209 79 47 chr9 22135640 22136147 -95726480 + Charlie1b DNA MER1_type 1 523 0 361 195 138 98 chr9 22136147 22136253 -95726374 - MIR SINE MIR -63 199 82 379 258 99 85 chr9 22136429 22137007 -95725620 - L1MC4a LINE L1 0 6121 5517 324 0 0 0 chr9 22140258 22140294 -95722333 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 77 0 0 chr9 22140475 22140527 -95722100 + GC_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr9 22140545 22140574 -95722053 + GC_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr9 22141013 22141058 -95721569 + GC_rich Low_complexity Low_complexity 1 45 0 201 121 0 0 chr9 22141904 22141937 -95720690 + (TG)n Simple_repeat Simple_repeat 1 33 0 262 287 0 21 chr9 22141978 22142018 -95720609 + G-rich Low_complexity Low_complexity 1 40 -52 234 116 0 0 chr9 22142018 22142061 -95720566 + (TG)n Simple_repeat Simple_repeat 1 43 0 262 287 0 21 chr9 22142061 22142114 -95720513 + G-rich Low_complexity Low_complexity 40 92 0 195 42 0 0 chr9 22142411 22142435 -95720192 + (CTCG)n Simple_repeat Simple_repeat 3 26 0 189 0 0 0 chr9 22142460 22142481 -95720146 + (CAG)n Simple_repeat Simple_repeat 2 22 0 370 294 13 33 chr9 22143865 22144018 -95718609 + CT-rich Low_complexity Low_complexity 1 150 0 215 214 24 0 chr9 22145506 22145548 -95717079 + (CCA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr9 22147096 22147118 -95715509 + AT_rich Low_complexity Low_complexity 1 22 0 2384 95 0 0 chr9 22147226 22147521 -95715106 + AluSc SINE Alu 1 295 -14 1970 226 77 105 chr9 22148608 22149619 -95713008 + L1MC4 LINE L1 6955 7937 -105 1608 174 3 30 chr9 22149654 22149959 -95712668 - AluJo SINE Alu -10 302 6 215 31 31 0 chr9 22150040 22150072 -95712555 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 180 111 0 0 chr9 22150192 22150219 -95712408 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 717 150 0 0 chr9 22152081 22152194 -95710433 + FLAM_A SINE Alu 25 137 -5 440 321 38 34 chr9 22153655 22153892 -95708735 + MER102a DNA MER1_type 73 310 -20 1056 207 61 8 chr9 22153966 22154259 -95708368 + MER58B DNA MER1_type 5 326 -15 * 2495 146 86 2 chr9 22154252 22154696 -95707931 - MER31A LTR ERV1 -4 481 1 247 184 58 69 chr9 22154696 22154730 -95707897 + MER58C DNA MER1_type 180 212 -3 1163 180 77 22 chr9 22154739 22154968 -95707659 - MER33 DNA MER1_type -2261 324 76 488 264 137 49 chr9 22154968 22155377 -95707250 + MER65A LTR ERV1 1 445 0 1163 180 77 22 chr9 22155377 22155466 -95707161 - MER33 DNA MER1_type -2509 76 1 523 292 218 16 chr9 22205963 22206395 -95656232 - L2 LINE L2 -817 2497 1979 434 381 104 12 chr9 22206459 22206882 -95655745 - L2 LINE L2 -2085 1229 768 234 384 0 0 chr9 22207165 22207251 -95655376 - L2 LINE L2 -2943 371 286 290 286 79 21 chr9 22207612 22207752 -95654875 + MER117 DNA MER1_type 9 156 -41 2577 233 74 100 chr9 22207812 22208184 -95654443 + L2 LINE L2 1533 1913 -1401 1533 181 22 4 chr9 22208184 22208461 -95654166 - AluJo SINE Alu -30 282 1 2577 233 74 100 chr9 22208461 22208560 -95654067 + L2 LINE L2 1913 2013 -1301 2176 126 0 0 chr9 22208560 22208854 -95653773 - AluSx SINE Alu -12 300 7 2577 233 74 100 chr9 22208854 22209095 -95653532 + L2 LINE L2 2013 2259 -1055 2327 89 3 0 chr9 22209095 22209397 -95653230 - AluY SINE Alu -8 303 1 1916 97 90 0 chr9 22209399 22209667 -95652960 - AluSx SINE Alu -20 292 1 2577 233 74 100 chr9 22209667 22210074 -95652553 + L2 LINE L2 2260 2627 -687 421 274 85 51 chr9 22210074 22210446 -95652181 - MLT1H LTR MaLR 0 549 125 209 217 87 0 chr9 22210874 22210920 -95651707 - MIR3 SINE MIR -21 187 138 663 291 104 33 chr9 22211151 22211515 -95651112 + Tigger8 DNA MER2_type 131 520 -146 185 257 27 14 chr9 22211785 22211859 -95650768 - MIR SINE MIR -3 259 185 282 56 0 0 chr9 22211876 22211912 -95650715 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1709 173 0 4 chr9 22211915 22212186 -95650441 - AluJo SINE Alu -33 279 10 664 270 70 42 chr9 22212248 22212489 -95650138 + MIR SINE MIR 13 260 -2 483 281 111 6 chr9 22212475 22212646 -95649981 + MIR SINE MIR 57 245 -17 * 491 156 0 22 chr9 22212728 22212818 -95649809 + AluSg/x SINE Alu 215 302 -10 186 231 15 62 chr9 22213198 22213263 -95649364 - L2 LINE L2 -529 2785 2724 302 106 0 0 chr9 22213279 22213326 -95649301 - L1P4 LINE L1 -424 5739 5693 184 215 51 114 chr9 22213560 22213639 -95648988 - L2 LINE L2 -12 3260 3187 * 212 264 242 11 chr9 22213638 22213729 -95648898 - MIR SINE MIR -62 146 35 972 192 91 0 chr9 22214767 22214975 -95647652 + MIR SINE MIR 30 256 -6 363 272 103 60 chr9 22214985 22215217 -95647410 - L1MC5 LINE L1 -37 7924 7683 1426 227 3 0 chr9 22215718 22216026 -95646601 - AluJo SINE Alu -3 309 1 2382 202 64 21 chr9 22216225 22216833 -95645794 + L1MB8 LINE L1 5531 6164 -14 256 284 102 11 chr9 22217018 22217106 -95645521 + L2 LINE L2 3139 3234 -38 1496 201 10 10 chr9 22217572 22217861 -95644766 + AluJo SINE Alu 17 305 -7 906 36 0 0 chr9 22218519 22218629 -95643998 + L1PA3 LINE L1 6046 6155 0 375 354 32 32 chr9 22218661 22218819 -95643808 + MIR3 SINE MIR 14 171 -37 25 31 0 0 chr9 22221563 22221595 -95641032 + AT_rich Low_complexity Low_complexity 1 32 0 1193 163 93 4 chr9 22222006 22222358 -95640269 + L1MB7 LINE L1 5766 6179 -1 1534 244 258 18 chr9 22222577 22223320 -95639307 + L1MC4 LINE L1 7124 8034 -8 234 327 64 73 chr9 22224477 22224587 -95638040 + L2 LINE L2 3141 3249 -23 237 114 57 23 chr9 22224697 22224785 -95637842 + T-rich Low_complexity Low_complexity 2 92 0 235 317 134 18 chr9 22224827 22224991 -95637636 - LTR16C LTR ERVL -6 485 303 180 0 0 0 chr9 22226151 22226171 -95636456 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr9 22226319 22226340 -95636287 + AT_rich Low_complexity Low_complexity 1 21 0 2452 31 41 0 chr9 22226667 22226960 -95635667 + AluY SINE Alu 1 305 -6 265 226 0 0 chr9 22227093 22227155 -95635472 - AluJ/monomer SINE Alu -4 296 235 26 30 0 0 chr9 22227740 22227773 -95634854 + AT_rich Low_complexity Low_complexity 1 33 0 2221 103 0 10 chr9 22228327 22228627 -95634000 + AluSq SINE Alu 1 297 -16 870 200 170 0 chr9 22228926 22229156 -95633471 - L1MB7 LINE L1 0 6184 5916 29 60 0 0 chr9 22229470 22229520 -95633107 + AT_rich Low_complexity Low_complexity 1 50 0 489 114 0 0 chr9 22232446 22232516 -95630111 - AluS SINE Alu -15 296 227 32 26 0 0 chr9 22232560 22232599 -95630028 + AT_rich Low_complexity Low_complexity 1 39 0 546 248 22 93 chr9 22232704 22232982 -95629645 - LTR41 LTR ERVL -1 772 515 758 200 5 46 chr9 22233127 22233322 -95629305 - LTR41 LTR ERVL -586 187 1 189 321 185 0 chr9 22233696 22233777 -95628850 - MIR SINE MIR -10 252 157 224 266 83 18 chr9 22233807 22233916 -95628711 + MIR SINE MIR 70 185 -77 * 554 250 55 30 chr9 22233903 22234067 -95628560 - MIR SINE MIR -14 248 81 3575 171 22 38 chr9 22234081 22234864 -95627763 - L1MB8 LINE L1 0 6178 5409 330 365 48 0 chr9 22234864 22234990 -95627637 - MIR SINE MIR -104 158 27 225 65 0 0 chr9 22235943 22235974 -95626653 + (CAAA)n Simple_repeat Simple_repeat 3 33 0 319 335 45 29 chr9 22236348 22236658 -95625969 - L2 LINE L2 -1230 2084 1770 330 214 44 19 chr9 22236760 22236919 -95625708 + (TA)n Simple_repeat Simple_repeat 1 163 0 229 263 211 0 chr9 22237106 22237201 -95625426 - L2 LINE L2 -9 3304 3190 445 253 34 34 chr9 22237203 22237349 -95625278 - MER5A DNA MER1_type -1 188 43 244 207 90 63 chr9 22237406 22237517 -95625110 - L1ME3 LINE L1 -88 6074 5961 1283 214 53 83 chr9 22237611 22237769 -95624858 - L1MC5 LINE L1 -438 7523 7362 2129 147 3 15 chr9 22237769 22238110 -95624517 + MER1B DNA MER1_type 1 337 0 1283 214 53 83 chr9 22238110 22238479 -95624148 - L1MC5 LINE L1 -599 7362 7012 233 161 11 118 chr9 22238480 22238573 -95624054 - L1MC5 LINE L1 -1001 6960 6878 688 256 72 0 chr9 22239146 22239341 -95623286 + Charlie8 DNA MER1_type 1 209 -2208 553 230 91 30 chr9 22239341 22239506 -95623121 + MER5B DNA MER1_type 1 175 -3 239 349 138 0 chr9 22239725 22239834 -95622793 + MER5A DNA MER1_type 1 124 -65 505 284 26 37 chr9 22240265 22240455 -95622172 + MER5A DNA MER1_type 1 188 -1 286 306 194 8 chr9 22241452 22241586 -95621041 - MER5A DNA MER1_type -3 186 28 367 216 223 22 chr9 22241596 22241735 -95620892 + MER5A DNA MER1_type 9 175 -14 311 271 78 50 chr9 22241759 22241918 -95620709 - MER5B DNA MER1_type -16 173 1 847 183 70 5 chr9 22241930 22242116 -95620511 + L1MB8 LINE L1 5976 6173 -5 198 0 0 0 chr9 22242369 22242391 -95620236 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr9 22242477 22242498 -95620129 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr9 22243669 22243711 -95618916 + AT_rich Low_complexity Low_complexity 1 42 0 2202 118 3 0 chr9 22244449 22244746 -95617881 - AluSq SINE Alu -15 298 1 265 208 111 0 chr9 22244777 22244849 -95617778 - MIR SINE MIR -10 252 173 1435 147 43 52 chr9 22245009 22245336 -95617291 + MER33 DNA MER1_type 1 324 0 35 24 0 0 chr9 22247108 22247150 -95615477 + AT_rich Low_complexity Low_complexity 1 42 0 264 348 30 22 chr9 22247201 22247336 -95615291 + MIR SINE MIR 53 188 -74 24 53 0 0 chr9 22247854 22247892 -95614735 + AT_rich Low_complexity Low_complexity 1 38 0 508 150 71 9 chr9 22248104 22248217 -95614410 + L1MB7 LINE L1 6060 6179 -5 1465 203 13 29 chr9 22248244 22248554 -95614073 + AluJo SINE Alu 1 305 -7 207 0 0 0 chr9 22248582 22248605 -95614022 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 377 291 103 18 chr9 22248967 22249151 -95613476 + L1MC4a LINE L1 5483 5490 -631 1721 145 37 4 chr9 22249151 22249420 -95613207 + AluJb SINE Alu 22 299 -13 377 291 103 18 chr9 22249420 22249609 -95613018 + L1MC4a LINE L1 5490 5661 -460 1846 167 3 31 chr9 22250031 22250348 -95612279 - AluJo SINE Alu -4 308 1 2683 59 0 0 chr9 22250373 22250712 -95611915 + L1PA3 LINE L1 5817 6155 0 881 315 114 30 chr9 22251058 22251939 -95610688 + L2 LINE L2 2281 3223 -49 1108 67 0 27 chr9 22251966 22252116 -95610511 + L1PA10 LINE L1 6012 6157 -11 2151 107 3 0 chr9 22252151 22252440 -95610187 + AluSp SINE Alu 1 290 -23 2167 93 3 10 chr9 22252893 22253182 -95609445 - AluSx SINE Alu -25 287 1 1399 156 48 73 chr9 22253628 22254000 -95608627 + L1MC5 LINE L1 6923 7285 -676 228 330 0 10 chr9 22254009 22254109 -95608518 + MIR SINE MIR 158 256 -6 1804 214 23 51 chr9 22254567 22255038 -95607589 + MLT1C LTR MaLR 9 466 -1 2248 129 14 3 chr9 22255580 22255936 -95606691 + MER46B DNA MER2_type 1 235 -1 25 0 0 0 chr9 22255978 22256003 -95606624 + AT_rich Low_complexity Low_complexity 1 25 0 210 37 0 0 chr9 22258939 22258966 -95603661 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 1824 138 3 14 chr9 22258966 22259249 -95603378 - AluSx SINE Alu -32 280 1 497 241 147 34 chr9 22259793 22259943 -95602684 + L1MC4a LINE L1 5681 5813 -1995 2645 146 14 9 chr9 22259943 22260367 -95602260 + MSTB LTR MaLR 1 426 0 497 241 147 34 chr9 22260367 22260482 -95602145 + L1MC4a LINE L1 5813 5976 -1832 2103 105 0 20 chr9 22260631 22260925 -95601702 - AluSx SINE Alu -19 293 6 208 352 57 0 chr9 22261545 22261633 -95600994 - L2 LINE L2 -1 3271 3179 604 237 92 0 chr9 22261929 22262081 -95600546 + FRAM SINE Alu 1 166 0 240 35 0 0 chr9 22262103 22262132 -95600495 + (GGAA)n Simple_repeat Simple_repeat 2 30 0 11075 174 22 16 chr9 22262235 22264765 -95597862 + L1M1 LINE L1 3056 5598 -707 24512 54 1 0 chr9 22264870 22268019 -95594608 - L1P LINE L1 -2174 3972 823 591 116 0 0 chr9 22268235 22268321 -95594306 - AluS SINE Alu -223 90 5 22 0 0 0 chr9 22269867 22269889 -95592738 + AT_rich Low_complexity Low_complexity 1 22 0 292 310 93 8 chr9 22273863 22273992 -95588635 + MIR SINE MIR 123 262 0 1485 222 25 1 chr9 22274230 22274561 -95588066 - MER33 DNA MER1_type -1 323 1 1912 151 13 3 chr9 22274611 22274910 -95587717 + AluSx SINE Alu 1 302 -10 249 290 73 19 chr9 22275859 22276057 -95586570 - L1MC/D LINE L1 -237 5884 5716 910 182 0 6 chr9 22276100 22276270 -95586357 + MER3 DNA MER1_type 1 122 -87 365 211 193 0 chr9 22276262 22276376 -95586251 - MER3 DNA MER1_type -87 122 34 * 1255 239 4 0 chr9 22276818 22277065 -95585562 - MER68 LTR ERV1 -4 558 311 297 338 146 26 chr9 22279534 22279685 -95582942 + MIR3 SINE MIR 17 185 -23 3517 166 47 12 chr9 22279704 22280426 -95582201 - L1MB1 LINE L1 0 6168 5422 2058 219 133 53 chr9 22280426 22281187 -95581440 - L1M4 LINE L1 -3348 3034 2335 2117 143 0 6 chr9 22281187 22281501 -95581126 - AluSx SINE Alu 0 312 1 2058 219 133 53 chr9 22281501 22281968 -95580659 - L1M4 LINE L1 -4047 2335 1667 2024 122 9 34 chr9 22281968 22282288 -95580339 - AluSx SINE Alu 0 312 1 2058 219 133 53 chr9 22282288 22282466 -95580161 - L1M4 LINE L1 -4715 1667 1505 22 0 0 0 chr9 22282715 22282737 -95579890 + AT_rich Low_complexity Low_complexity 1 22 0 1176 209 66 80 chr9 22283562 22283912 -95578715 - MER2 DNA MER2_type 0 345 1 1714 157 116 61 chr9 22284043 22284450 -95578177 - L1MB8 LINE L1 -15 6163 5735 * 3378 198 35 16 chr9 22284433 22285866 -95576761 - L1MB7 LINE L1 -232 5952 4498 1679 204 0 0 chr9 22286062 22286356 -95576271 - AluJo SINE Alu -17 295 2 23 0 0 0 chr9 22286608 22286631 -95575996 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr9 22286894 22286933 -95575694 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr9 22287951 22287981 -95574646 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 22288840 22288867 -95573760 + (A)n Simple_repeat Simple_repeat 1 27 0 180 206 0 0 chr9 22289308 22289342 -95573285 + L2 LINE L2 3216 3249 -23 281 281 173 22 chr9 22290697 22290836 -95571791 - MIR SINE MIR -16 246 87 201 239 119 15 chr9 22291496 22291563 -95571064 + MIR SINE MIR 81 154 -108 348 24 0 0 chr9 22291987 22292028 -95570599 + (TG)n Simple_repeat Simple_repeat 2 42 0 1964 185 40 32 chr9 22292938 22293482 -95569145 + MLT2A2 LTR ERVL 1 554 0 2073 164 25 30 chr9 22293863 22294302 -95568325 - L1MB8 LINE L1 0 6178 5742 1594 238 36 49 chr9 22294302 22294337 -95568290 + L1MA9 LINE L1 5749 5783 -529 246 105 0 0 chr9 22294337 22294375 -95568252 + (TG)n Simple_repeat Simple_repeat 2 39 0 1594 238 36 49 chr9 22294375 22294733 -95567894 + L1MA9 LINE L1 5783 6136 -176 1619 163 73 3 chr9 22294733 22295022 -95567605 + AluJo SINE Alu 1 309 -3 1594 238 36 49 chr9 22295022 22295160 -95567467 + L1MA9 LINE L1 6136 6274 -38 1560 163 7 0 chr9 22295164 22295441 -95567186 - L1MB8 LINE L1 -415 5769 5491 5643 93 5 10 chr9 22295471 22296266 -95566361 - L1PA10 LINE L1 -4 6164 5374 869 179 22 22 chr9 22296240 22296424 -95566203 - L1MB8 LINE L1 -672 5502 5319 * 203 236 0 136 chr9 22296716 22296826 -95565801 - MIR SINE MIR -13 249 155 613 244 35 78 chr9 22297059 22297518 -95565109 - L1MC5 LINE L1 -234 7727 7289 252 286 64 35 chr9 22297503 22297674 -95564953 - L1MC4a LINE L1 -414 7394 7219 * 1279 270 81 83 chr9 22298373 22298536 -95564091 + L2 LINE L2 2396 2558 -755 1266 103 46 73 chr9 22298536 22298767 -95563860 + L1MA9 LINE L1 6059 6284 -28 862 189 137 94 chr9 22298767 22298824 -95563803 + MLT1A1 LTR MaLR 1 54 -311 1735 161 7 4 chr9 22298824 22299131 -95563496 + AluJo SINE Alu 1 308 0 862 189 137 94 chr9 22299131 22299421 -95563206 + MLT1A1 LTR MaLR 54 365 0 1266 103 46 73 chr9 22299421 22299450 -95563177 + L1MA9 LINE L1 6284 6312 0 1279 270 81 83 chr9 22299450 22299928 -95562699 + L2 LINE L2 2558 3052 -261 222 37 0 0 chr9 22300668 22300695 -95561932 + (CA)n Simple_repeat Simple_repeat 2 28 0 1562 155 100 4 chr9 22300705 22300976 -95561651 - AluJo SINE Alu -15 297 1 190 333 200 0 chr9 22301344 22301449 -95561178 - MIR SINE MIR -37 225 100 23 0 0 0 chr9 22301602 22301625 -95561002 + AT_rich Low_complexity Low_complexity 1 23 0 325 278 111 35 chr9 22301755 22301953 -95560674 - L1MC4a LINE L1 -1786 6022 5810 2712 165 39 11 chr9 22301984 22302522 -95560105 + L1MB7 LINE L1 5631 6183 -1 208 269 0 0 chr9 22303750 22303802 -95558825 + T-rich Low_complexity Low_complexity 1 52 0 1968 138 47 0 chr9 22304519 22304815 -95557812 + AluSx SINE Alu 3 312 0 363 23 0 0 chr9 22305246 22305290 -95557337 + (CA)n Simple_repeat Simple_repeat 1 44 0 1041 95 0 50 chr9 22305367 22305546 -95557081 - L1MA5 LINE L1 -1 6299 6130 470 308 103 35 chr9 22308420 22308848 -95553779 + HAL1 LINE L1 1131 1587 -920 21 82 0 0 chr9 22309033 22309082 -95553545 + AT_rich Low_complexity Low_complexity 1 49 0 2497 62 3 0 chr9 22309530 22309834 -95552793 + AluY SINE Alu 1 305 -6 207 0 0 0 chr9 22309846 22309869 -95552758 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11700 57 3 21 chr9 22309870 22312185 -95550442 - L1PA4 LINE L1 -11 6144 3840 1679 199 57 20 chr9 22312286 22312739 -95549888 + L1MA3 LINE L1 5831 6300 -5 26 50 0 0 chr9 22312739 22312779 -95549848 + AT_rich Low_complexity Low_complexity 1 40 0 228 360 11 11 chr9 22312786 22312875 -95549752 + L2 LINE L2 2759 2847 -467 23 0 0 0 chr9 22313206 22313229 -95549398 + AT_rich Low_complexity Low_complexity 1 23 0 385 246 155 7 chr9 22313648 22313790 -95548837 + MIR SINE MIR 2 164 -98 206 211 26 0 chr9 22316093 22316131 -95546496 + L2 LINE L2 3209 3247 -25 1114 225 9 0 chr9 22316185 22316407 -95546220 - MER58A DNA MER1_type 0 224 1 454 288 144 12 chr9 22316458 22316618 -95546009 - MER5A DNA MER1_type 0 189 9 321 332 37 108 chr9 22317487 22317755 -95544872 - L2 LINE L2 -5 3267 3019 1027 195 111 97 chr9 22317878 22318161 -95544466 - Charlie2 DNA MER1_type -5 2857 2579 334 80 0 0 chr9 22318161 22318211 -95544416 + L1PB4 LINE L1 6107 6156 0 1027 195 111 97 chr9 22318211 22318523 -95544104 - Charlie2 DNA MER1_type -283 2579 2254 1091 241 108 6 chr9 22318547 22318870 -95543757 - Charlie2 DNA MER1_type -2503 359 4 28 0 0 0 chr9 22319632 22319660 -95542967 + AT_rich Low_complexity Low_complexity 1 28 0 3263 147 82 15 chr9 22319897 22320504 -95542123 + MER39B LTR ERV1 6 653 0 24 0 0 0 chr9 22320604 22320628 -95541999 + AT_rich Low_complexity Low_complexity 1 24 0 1651 174 21 26 chr9 22321125 22321465 -95541162 + L1MB8 LINE L1 5835 6172 -6 379 276 241 17 chr9 22321509 22321683 -95540944 + MIR SINE MIR 32 244 -18 518 260 51 60 chr9 22322830 22323051 -95539576 + L1ME4a LINE L1 5593 5804 -349 216 0 0 0 chr9 22323055 22323079 -95539548 + (TA)n Simple_repeat Simple_repeat 2 25 0 333 287 74 42 chr9 22323082 22323298 -95539329 + L1ME4a LINE L1 5850 6072 -49 2455 97 0 0 chr9 22323861 22324172 -95538455 + AluSx SINE Alu 1 311 -1 218 411 47 0 chr9 22324175 22324282 -95538345 + L2 LINE L2 3160 3271 -1 768 193 17 44 chr9 22324311 22324492 -95538135 - L1M4 LINE L1 -419 5759 5584 8241 213 43 32 chr9 22324778 22328699 -95533928 + L1M1 LINE L1 2502 6411 -1154 968 105 20 7 chr9 22328709 22328861 -95533766 + L1MA3 LINE L1 6152 6305 0 1686 157 10 17 chr9 22328959 22329252 -95533375 + AluJb SINE Alu 1 291 -21 1223 176 5 9 chr9 22329359 22329569 -95533058 - AluJo SINE Alu -103 209 1 304 264 92 80 chr9 22329885 22330048 -95532579 + MIR3 SINE MIR 10 174 -34 354 234 151 128 chr9 22330050 22330486 -95532141 - MLT1J1 LTR MaLR 0 446 1 1863 155 132 5 chr9 22330734 22331116 -95531511 - Tigger2 DNA MER2_type 0 2718 1 1740 144 0 45 chr9 22331818 22332131 -95530496 + AluJo SINE Alu 1 299 -13 314 136 0 61 chr9 22332795 22332861 -95529766 + FAM SINE Alu 118 179 0 207 0 0 0 chr9 22333564 22333587 -95529040 + (T)n Simple_repeat Simple_repeat 1 23 0 2203 99 3 3 chr9 22333650 22333943 -95528684 + AluSq SINE Alu 3 295 -18 617 198 159 0 chr9 22334237 22334363 -95528264 + MER58A DNA MER1_type 3 148 0 330 241 23 11 chr9 22335333 22335420 -95527207 + MER103 DNA DNA 2 89 -77 628 256 83 6 chr9 22335432 22335612 -95527015 + L2 LINE L2 2238 2431 -883 983 67 8 0 chr9 22335712 22335832 -95526795 + AluSq/x SINE Alu 1 121 -191 782 147 21 7 chr9 22336077 22336220 -95526407 + AluSg/x SINE Alu 156 300 -12 561 193 22 67 chr9 22336220 22336270 -95526357 + L2 LINE L2 2433 2484 -830 2247 125 7 0 chr9 22336270 22336575 -95526052 - AluSx SINE Alu -5 307 1 561 193 22 67 chr9 22336575 22336659 -95525968 + L2 LINE L2 2484 2561 -753 1444 284 56 40 chr9 22336696 22337262 -95525365 + L2 LINE L2 2745 3313 0 1245 110 59 59 chr9 22337624 22337860 -95524767 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr9 22337965 22337989 -95524638 + AT_rich Low_complexity Low_complexity 1 24 0 624 74 0 0 chr9 22338149 22338244 -95524383 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 29 0 0 0 chr9 22339020 22339049 -95523578 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr9 22339330 22339373 -95523254 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 22339876 22339903 -95522724 + AT_rich Low_complexity Low_complexity 1 27 0 454 202 225 16 chr9 22340238 22340367 -95522260 + HsTC2 DNA Tc2 1 156 -1742 621 222 18 18 chr9 22340372 22340539 -95522088 + HsTC2 DNA Tc2 1732 1898 0 378 304 61 0 chr9 22341078 22341226 -95521401 + MIR SINE MIR 94 250 -12 21 71 0 0 chr9 22341567 22341609 -95521018 + AT_rich Low_complexity Low_complexity 1 42 0 2226 112 0 3 chr9 22342622 22342925 -95519702 - AluSx SINE Alu -10 302 1 216 0 0 0 chr9 22343321 22343345 -95519282 + (T)n Simple_repeat Simple_repeat 1 24 0 247 317 134 24 chr9 22344911 22344963 -95517664 - L3b LINE CR1 -265 1318 1273 2169 131 0 0 chr9 22344963 22345261 -95517366 + AluSx SINE Alu 2 299 -13 247 317 134 24 chr9 22345261 22345372 -95517255 - L3b LINE CR1 -310 1273 1137 8570 28 0 1 chr9 22345527 22346767 -95515860 - L1P2 LINE L1 -554 5601 4363 25 0 0 0 chr9 22346985 22347010 -95515617 + AT_rich Low_complexity Low_complexity 1 25 0 201 269 74 56 chr9 22347550 22347658 -95514969 - MER5B DNA MER1_type -62 116 7 2594 145 34 0 chr9 22348401 22348815 -95513812 - MSTA LTR MaLR 0 428 1 268 349 81 55 chr9 22349108 22349380 -95513247 - L2 LINE L2 -133 3139 2861 290 77 0 0 chr9 22349584 22349623 -95513004 - MLT1A1 LTR MaLR -32 358 320 1950 131 18 3 chr9 22349626 22349908 -95512719 + AluSx SINE Alu 1 286 -26 339 172 16 0 chr9 22349915 22349979 -95512648 - MLT1A1 LTR MaLR -52 313 249 2061 133 3 22 chr9 22350090 22350406 -95512221 + AluSq SINE Alu 1 310 -3 413 335 120 5 chr9 22350422 22350622 -95512005 - L1M4c LINE L1 -4874 1510 1288 21 36 0 0 chr9 22350622 22350650 -95511977 + AT_rich Low_complexity Low_complexity 1 28 0 226 0 59 0 chr9 22350692 22350726 -95511901 + (TA)n Simple_repeat Simple_repeat 1 36 0 1465 194 28 22 chr9 22350726 22351082 -95511545 + L1MB8 LINE L1 5815 6172 -6 689 174 154 25 chr9 22351105 22351288 -95511339 - L1MD2 LINE L1 -73 7912 6194 777 169 14 12 chr9 22351288 22351432 -95511195 - THE1B LTR MaLR 0 364 246 1815 132 69 0 chr9 22351519 22351808 -95510819 - AluSx SINE Alu -3 309 1 198 0 0 0 chr9 22353796 22353818 -95508809 + (TTG)n Simple_repeat Simple_repeat 2 23 0 352 222 8 86 chr9 22356744 22356861 -95505766 - L1ME2 LINE L1 -11 6153 6046 1167 183 97 10 chr9 22356861 22357160 -95505467 - MER33 DNA MER1_type -9 315 1 2137 199 104 57 chr9 22357160 22357452 -95505175 - L1ME2 LINE L1 -129 6035 5758 2342 113 44 3 chr9 22357452 22357816 -95504811 - L1PA11 LINE L1 0 6174 5796 2137 199 104 57 chr9 22357816 22358175 -95504452 - L1ME2 LINE L1 -406 5758 5353 475 288 56 30 chr9 22358270 22358468 -95504159 - MER102a DNA MER1_type -14 316 114 3394 162 130 70 chr9 22358657 22359504 -95503123 + L1MA1 LINE L1 5392 6289 -13 210 91 0 0 chr9 22359816 22359849 -95502778 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 697 185 0 0 chr9 22359852 22359971 -95502656 - FLAM_C SINE Alu -24 119 1 319 311 112 12 chr9 22360477 22360638 -95501989 - MER5B DNA MER1_type -1 177 1 487 196 76 0 chr9 22360673 22360765 -95501862 - MER5A DNA MER1_type -88 101 3 2297 96 3 0 chr9 22360949 22361240 -95501387 - AluSp SINE Alu -21 292 1 200 235 82 94 chr9 22361798 22361883 -95500744 - MIR SINE MIR -153 109 26 3102 40 0 0 chr9 22362379 22362753 -95499874 - L1PA3 LINE L1 -3 6152 5779 7479 28 60 0 chr9 22362753 22363679 -95498948 + L1P LINE L1 4115 5096 -1050 313 352 45 25 chr9 22364012 22364211 -95498416 + L2 LINE L2 2550 2752 -562 272 355 121 45 chr9 22364408 22364828 -95497799 + L2 LINE L2 2805 3256 -16 371 118 0 0 chr9 22364842 22364893 -95497734 + AluSg/x SINE Alu 214 264 -36 660 189 8 16 chr9 22365058 22365180 -95497447 - FLAM_A SINE Alu -11 122 2 375 286 83 12 chr9 22365284 22365425 -95497202 - MIR3 SINE MIR -10 198 42 2241 113 0 0 chr9 22365425 22365727 -95496900 - AluY SINE Alu -9 302 1 375 286 83 12 chr9 22365727 22365753 -95496874 - MIR3 SINE MIR -166 42 19 365 319 25 8 chr9 22366418 22366537 -95496090 + L2 LINE L2 3193 3313 0 25 0 0 0 chr9 22366655 22366680 -95495947 + AT_rich Low_complexity Low_complexity 1 25 0 1080 209 17 0 chr9 22366687 22366922 -95495705 - L1PA16 LINE L1 -15 6151 5913 186 260 106 39 chr9 22367208 22367312 -95495315 - L2 LINE L2 -23 3290 3180 1013 163 0 0 chr9 22367336 22367483 -95495144 + FAM SINE Alu 20 166 -19 272 287 122 63 chr9 22367547 22367784 -95494843 - L2 LINE L2 -218 3054 2804 515 279 54 0 chr9 22367952 22368099 -95494528 + MIR SINE MIR 87 241 -21 2258 86 0 10 chr9 22368272 22368562 -95494065 - AluSc SINE Alu -22 287 1 404 333 60 12 chr9 22370344 22370512 -95492115 - L3 LINE CR1 -2 1575 1400 226 188 0 31 chr9 22370616 22370680 -95491947 + CT-rich Low_complexity Low_complexity 3 64 0 14918 31 0 0 chr9 22370835 22373377 -95489250 - L1PA3 LINE L1 -3 6152 3607 24 0 0 0 chr9 22373452 22373476 -95489151 + AT_rich Low_complexity Low_complexity 1 24 0 1186 198 24 0 chr9 22374304 22374516 -95488111 + MER20 DNA MER1_type 2 218 -1 265 323 0 0 chr9 22375202 22375264 -95487363 + L2 LINE L2 3209 3270 -2 22 0 0 0 chr9 22376174 22376196 -95486431 + AT_rich Low_complexity Low_complexity 1 22 0 230 204 23 0 chr9 22376625 22376669 -95485958 - L2 LINE L2 -4 3268 3224 209 305 67 67 chr9 22376668 22376773 -95485854 - MIR SINE MIR -157 105 1 * 221 354 0 0 chr9 22376773 22376838 -95485789 - L2 LINE L2 -91 3181 3117 214 322 149 18 chr9 22378222 22378360 -95484267 - MIR SINE MIR -69 139 4 273 109 0 0 chr9 22378723 22378769 -95483858 + (T)n Simple_repeat Simple_repeat 1 46 0 527 32 0 0 chr9 22379358 22379421 -95483206 + L1P LINE L1 4168 4230 -1916 592 258 36 68 chr9 22480125 22480346 -95382281 - MIR SINE MIR 0 262 49 250 109 0 0 chr9 22480770 22480816 -95381811 - Alu SINE Alu -4 296 251 489 66 0 0 chr9 22480817 22480878 -95381749 + AluSg/x SINE Alu 73 133 -177 2227 103 0 7 chr9 22481017 22481317 -95381310 - AluSc SINE Alu -11 298 1 1662 95 5 5 chr9 22481491 22481713 -95380914 - AluSg/x SINE Alu -5 305 84 21 0 0 0 chr9 22481885 22481906 -95380721 + AT_rich Low_complexity Low_complexity 1 21 0 202 211 0 39 chr9 22482297 22482349 -95380278 + A-rich Low_complexity Low_complexity 1 50 0 821 89 0 16 chr9 22482667 22482790 -95379837 + L1PA8 LINE L1 6052 6172 0 7395 257 33 33 chr9 22484053 22487639 -95374988 - L1PA12 LINE L1 -4526 3055 6 714 230 21 0 chr9 22488347 22488582 -95374045 - L1M4 LINE L1 -3000 3146 2907 906 98 0 0 chr9 22488587 22488719 -95373908 - L1PA6 LINE L1 0 6154 6023 25 65 0 0 chr9 22489258 22489304 -95373323 + AT_rich Low_complexity Low_complexity 1 46 0 2876 206 72 23 chr9 22490292 22491202 -95371425 + MER106B DNA MER1_type 28 982 -77 201 171 0 0 chr9 22492240 22492275 -95370352 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr9 22492275 22492298 -95370329 + AT_rich Low_complexity Low_complexity 1 23 0 211 340 61 27 chr9 22492531 22492678 -95369949 - L2 LINE L2 -38 3275 3124 31 58 0 0 chr9 22493387 22493439 -95369188 + AT_rich Low_complexity Low_complexity 1 52 0 2880 102 23 4 chr9 22493557 22494320 -95368307 + L1PA8A LINE L1 4880 5651 -480 23 68 0 0 chr9 22494582 22494626 -95368001 + AT_rich Low_complexity Low_complexity 1 44 0 13148 113 5 13 chr9 22494763 22496893 -95365734 + L1P LINE L1 1341 3454 -2692 3046 64 0 5 chr9 22496878 22497286 -95365341 - L1P LINE L1 -1179 4967 4562 * 4137 187 11 6 chr9 22497387 22498236 -95364391 - L1PA13 LINE L1 -1957 4840 3988 2968 247 47 7 chr9 22498239 22499098 -95363529 - L1PA13 LINE L1 -3690 3107 2215 3112 23 0 0 chr9 22499105 22499503 -95363124 + L1PA4 LINE L1 2805 3202 -2944 16159 27 0 0 chr9 22499604 22502287 -95360340 + L1PA4 LINE L1 3471 6152 -3 33 0 0 0 chr9 22502287 22502320 -95360307 + AT_rich Low_complexity Low_complexity 1 33 0 4989 198 21 8 chr9 22502459 22503490 -95359137 - L1PA13 LINE L1 -4583 2204 1160 1438 222 36 0 chr9 22505172 22505506 -95357121 + L1MD3 LINE L1 7551 7896 -99 1720 219 62 31 chr9 22506072 22506552 -95356075 - MLT2B3 LTR ERVL -57 497 3 1818 170 38 30 chr9 22507178 22507573 -95355054 - L1MB2 LINE L1 -2 6169 5772 1713 184 16 103 chr9 22507651 22508130 -95354497 - L1M3 LINE L1 -354 5814 5392 1743 188 28 6 chr9 22508130 22508482 -95354145 - MLT1A1 LTR MaLR -3 362 3 1713 184 16 103 chr9 22508482 22508577 -95354050 - L1M3 LINE L1 -776 5392 5290 6811 58 0 2 chr9 22508565 22509728 -95352899 - L1PA3 LINE L1 -1 6154 4978 1768 63 8 0 chr9 22509730 22509968 -95352659 + L1P LINE L1 4090 4329 -1817 824 261 21 9 chr9 22510068 22510401 -95352226 - L1M3 LINE L1 -923 5223 4887 22 35 0 0 chr9 22510513 22510542 -95352085 + AT_rich Low_complexity Low_complexity 1 29 0 1266 108 54 58 chr9 22511638 22511856 -95350771 - L1MA5A LINE L1 0 6297 6079 1946 132 20 54 chr9 22511856 22512205 -95350422 - MER1B DNA MER1_type 0 337 1 1266 108 54 58 chr9 22512205 22512264 -95350363 - L1MA5A LINE L1 -218 6079 6021 1982 143 48 11 chr9 22512327 22512706 -95349921 - L1MA5A LINE L1 -266 6031 5639 406 103 0 0 chr9 22512702 22512760 -95349867 - L1MA1 LINE L1 -447 5855 5798 * 2073 200 22 19 chr9 22512761 22513296 -95349331 - L1M3 LINE L1 -1444 4702 4166 443 169 12 0 chr9 22513303 22513386 -95349241 - L1M3 LINE L1 -1897 4249 4166 280 252 0 122 chr9 22513381 22513504 -95349123 + L1M2c LINE L1 1072 1179 -5610 * 5276 92 7 3 chr9 22513865 22514637 -95347990 + L1PA14 LINE L1 5383 6157 -4 182 331 33 26 chr9 22514750 22514901 -95347726 - L2 LINE L2 -978 2336 2185 2121 142 7 0 chr9 22516054 22516184 -95346443 + AluSx SINE Alu 1 129 -183 207 0 0 0 chr9 22516184 22516207 -95346420 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2121 142 7 0 chr9 22516207 22516386 -95346241 + AluSx SINE Alu 129 312 0 593 243 27 36 chr9 22516486 22516708 -95345919 + L1M4 LINE L1 5057 5276 -870 449 72 14 0 chr9 22516708 22516777 -95345850 + L1MA2 LINE L1 5778 5847 -457 3874 231 94 87 chr9 22516888 22518047 -95344580 + L1MD3 LINE L1 6126 7419 -576 481 263 0 0 chr9 22518047 22518165 -95344462 + MLT1F1 LTR MaLR 8 125 -442 3874 231 94 87 chr9 22518165 22518732 -95343895 + L1MD3 LINE L1 7419 7981 -14 1340 232 146 19 chr9 22518905 22519315 -95343312 + MER31B LTR ERV1 5 466 0 195 314 43 0 chr9 22520092 22520162 -95342465 + L2 LINE L2 3224 3296 -17 3077 206 64 32 chr9 22521044 22522065 -95340562 + MER106B DNA MER1_type 3 1055 -4 21 57 0 0 chr9 22523046 22523081 -95339546 + AT_rich Low_complexity Low_complexity 1 35 0 187 217 49 84 chr9 22523345 22523488 -95339139 - L2 LINE L2 -65 3248 3111 338 132 26 13 chr9 22524153 22524229 -95338398 + MSTA LTR MaLR 352 428 0 9622 173 6 3 chr9 22524229 22525875 -95336752 + MSTA-int LTR MaLR 1 1651 0 2237 149 20 78 chr9 22525875 22526288 -95336339 + MSTA LTR MaLR 1 387 -41 2086 142 0 0 chr9 22526288 22526576 -95336051 - AluSx SINE Alu -24 288 1 2237 149 20 78 chr9 22526576 22526612 -95336015 + MSTA LTR MaLR 387 424 -4 1322 25 0 0 chr9 22526626 22526783 -95335844 - L1PA3 LINE L1 -1 6154 5998 21 36 0 0 chr9 22526975 22527003 -95335624 + AT_rich Low_complexity Low_complexity 1 28 0 1759 180 23 12 chr9 22529064 22529409 -95333218 + MLT2D LTR ERVL 16 364 -50 223 246 0 15 chr9 22529465 22529530 -95333097 + (CA)n Simple_repeat Simple_repeat 1 64 0 338 104 0 0 chr9 22529533 22529581 -95333046 + MLT2D LTR ERVL 350 397 0 527 188 61 91 chr9 22529692 22529857 -95332770 - MER5B DNA MER1_type -1 177 18 193 385 54 27 chr9 22530052 22530200 -95332427 - L2 LINE L2 0 3272 3121 334 241 154 41 chr9 22530228 22530389 -95332238 - MIR SINE MIR -10 252 9 425 351 7 23 chr9 22530678 22530867 -95331760 - MIR3 SINE MIR -1 207 22 384 253 151 14 chr9 22531253 22531399 -95331228 - MLT1J2 LTR MaLR -134 316 151 243 250 29 0 chr9 22531437 22531505 -95331122 - MLT1J1 LTR MaLR -375 71 2 2265 117 10 0 chr9 22532776 22533085 -95329542 + AluSx SINE Alu 1 312 0 510 300 73 85 chr9 22534131 22534448 -95328179 + L2 LINE L2 2960 3272 0 230 132 19 0 chr9 22534841 22534894 -95327733 + T-rich Low_complexity Low_complexity 3 56 0 6510 16 0 3 chr9 22534903 22535651 -95326976 - L1PA3 LINE L1 -2 6153 5408 23 0 0 0 chr9 22536523 22536546 -95326081 + AT_rich Low_complexity Low_complexity 1 23 0 435 274 130 43 chr9 22537123 22537353 -95325274 - MIR SINE MIR -1 261 12 213 119 0 0 chr9 22537779 22537821 -95324806 + (T)n Simple_repeat Simple_repeat 1 42 0 2445 230 102 14 chr9 22538824 22539714 -95322913 + L1ME2 LINE L1 5179 6156 -8 392 282 0 12 chr9 22539836 22539921 -95322706 + MER5B DNA MER1_type 50 133 -45 23 0 0 0 chr9 22539989 22540012 -95322615 + AT_rich Low_complexity Low_complexity 1 23 0 1449 213 27 43 chr9 22540014 22540390 -95322237 + MLT1A2 LTR MaLR 1 370 -4 27 49 0 0 chr9 22540847 22540888 -95321739 + AT_rich Low_complexity Low_complexity 1 41 0 1769 52 5 0 chr9 22541019 22541232 -95321395 - 7SLRNA srpRNA srpRNA -89 231 18 11026 35 5 0 chr9 22541233 22543358 -95319269 + L1PA5 LINE L1 3999 6154 0 279 0 0 0 chr9 22543358 22543389 -95319238 + (TA)n Simple_repeat Simple_repeat 1 31 0 535 329 28 24 chr9 22547505 22547754 -95314873 + MIR SINE MIR 3 252 -10 288 379 63 25 chr9 22547769 22548136 -95314491 + L2 LINE L2 962 1342 -1972 350 305 67 60 chr9 22548652 22548967 -95313660 + L2 LINE L2 2009 2325 -989 376 289 152 46 chr9 22548976 22549173 -95313454 - L2 LINE L2 0 3272 3055 263 241 0 0 chr9 22549202 22549256 -95313371 + L2 LINE L2 3255 3308 -5 370 281 36 50 chr9 22549460 22549599 -95313028 - MIR SINE MIR -49 213 77 1798 190 135 24 chr9 22549647 22550431 -95312196 + MER45B DNA AcHobo 123 1040 0 182 308 19 19 chr9 22550435 22550487 -95312140 - MIR SINE MIR -179 83 32 736 269 56 27 chr9 22550608 22550959 -95311668 + LTR16A LTR ERVL 1 444 -6 1853 161 0 57 chr9 22552443 22552760 -95309867 + AluJb SINE Alu 1 299 -13 1505 260 50 32 chr9 22552925 22553441 -95309186 + L2 LINE L2 2776 3311 -2 588 301 53 31 chr9 22556145 22556371 -95306256 + MIR SINE MIR 28 258 -4 1066 176 189 47 chr9 22556823 22557182 -95305445 - MER45B DNA AcHobo -112 928 519 329 306 169 0 chr9 22557604 22557787 -95304840 + MIR SINE MIR 49 262 0 267 250 0 0 chr9 22558149 22558209 -95304418 + (TG)n Simple_repeat Simple_repeat 2 61 0 188 229 33 0 chr9 22558949 22559010 -95303617 + CT-rich Low_complexity Low_complexity 1 63 0 29 60 0 0 chr9 22559126 22559176 -95303451 + AT_rich Low_complexity Low_complexity 1 50 0 321 318 56 32 chr9 22559337 22559463 -95303164 - MIR3 SINE MIR -72 136 8 289 259 111 9 chr9 22559615 22559816 -95302811 + Charlie2 DNA MER1_type 1 286 -2496 1391 214 106 101 chr9 22559839 22560827 -95301800 + Charlie2 DNA MER1_type 1870 2862 0 22 0 0 0 chr9 22561701 22561723 -95300904 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 22562253 22562274 -95300353 + AT_rich Low_complexity Low_complexity 1 21 0 2059 123 3 0 chr9 22563156 22563449 -95299178 - AluSx SINE Alu -18 294 1 213 250 0 0 chr9 22564053 22564113 -95298514 + CT-rich Low_complexity Low_complexity 1 60 0 293 366 0 0 chr9 22564888 22564981 -95297646 - MIR3 SINE MIR -6 202 110 369 337 87 17 chr9 22564982 22565154 -95297473 + MIR SINE MIR 2 185 -77 1286 233 49 6 chr9 22565913 22566239 -95296388 + MER58B DNA MER1_type 2 341 0 358 343 65 5 chr9 22566306 22566522 -95296105 + L2 LINE L2 2552 2780 -534 2272 104 0 3 chr9 22566522 22566821 -95295806 - AluY SINE Alu -13 298 1 255 174 43 0 chr9 22566849 22566895 -95295732 - HSMAR1 DNA Mariner -1236 51 4 2076 123 0 7 chr9 22569258 22569569 -95293058 - AluSq SINE Alu 0 309 1 4099 132 19 23 chr9 22570575 22571301 -95291326 + L1MA8 LINE L1 5538 6260 -31 504 115 0 82 chr9 22571327 22571449 -95291178 + L1MA8 LINE L1 6178 6289 -2 448 323 16 0 chr9 22571472 22571599 -95291028 + MER5A DNA MER1_type 61 189 0 215 361 83 15 chr9 22573165 22573298 -95289329 + MIR3 SINE MIR 4 145 -63 868 343 116 11 chr9 22573320 22573699 -95288928 + MER115 DNA AcHobo 38 456 -237 611 117 0 0 chr9 22573905 22573999 -95288628 - AluY SINE Alu 0 311 218 1544 65 0 0 chr9 22573999 22574184 -95288443 - AluY SINE Alu -126 185 1 526 306 50 54 chr9 22574435 22574693 -95287934 + MIR SINE MIR 6 262 0 2134 103 31 0 chr9 22575473 22575765 -95286862 - AluSg SINE Alu -9 301 1 1692 192 3 3 chr9 22575842 22576134 -95286493 - AluJo SINE Alu -16 296 5 211 237 105 35 chr9 22577130 22577244 -95285383 - MIR SINE MIR -70 192 71 429 272 74 37 chr9 22577426 22577588 -95285039 - MER5A DNA MER1_type 0 189 22 7032 40 7 0 chr9 22577588 22578460 -95284167 + L1PA4 LINE L1 5270 6147 -8 28 0 0 0 chr9 22578463 22578491 -95284136 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 22579005 22579050 -95283577 + AT_rich Low_complexity Low_complexity 1 45 0 441 239 168 7 chr9 22580262 22580417 -95282210 + MIR SINE MIR 79 258 -4 231 125 0 0 chr9 22580618 22580658 -95281969 + (TG)n Simple_repeat Simple_repeat 2 41 0 312 347 16 0 chr9 22582605 22582726 -95279901 + MIR3 SINE MIR 76 198 -10 426 279 7 78 chr9 22582809 22582963 -95279664 - MER5A DNA MER1_type -31 158 5 315 233 58 19 chr9 22583019 22583122 -95279505 - MLT1L LTR MaLR -4 611 505 233 363 22 0 chr9 22583245 22583336 -95279291 - MLT1L LTR MaLR -347 268 176 911 210 6 0 chr9 22583348 22583524 -95279103 - MER5B DNA MER1_type 0 178 2 1327 204 117 0 chr9 22584676 22584941 -95277686 + AluJb SINE Alu 3 298 -4 2519 190 11 50 chr9 22585536 22586072 -95276555 + MLT2B2 LTR ERVL 1 515 0 2335 84 0 0 chr9 22586186 22586473 -95276154 + AluY SINE Alu 13 299 -12 447 331 53 0 chr9 22586760 22586911 -95275716 - MIR SINE MIR -9 253 95 242 360 0 0 chr9 22587385 22587485 -95275142 + MIR SINE MIR 163 262 0 291 314 81 32 chr9 22587745 22587869 -95274758 - MIR3 SINE MIR -51 157 28 264 387 57 21 chr9 22587882 22588217 -95274410 + L2 LINE L2 2701 3046 -226 30504 116 11 65 chr9 22588261 22594736 -95267891 + L1PA7 LINE L1 35 6154 0 2012 53 89 60 chr9 22594839 22595141 -95267486 - AluY SINE Alu 0 311 1 23 33 0 0 chr9 22595190 22595220 -95267407 + AT_rich Low_complexity Low_complexity 1 30 0 358 351 53 0 chr9 22595287 22595418 -95267209 + L2 LINE L2 3134 3271 -1 547 277 135 30 chr9 22595600 22595896 -95266731 - LTR16A LTR ERVL -41 409 83 724 336 52 12 chr9 22596125 22596449 -95266178 - ERVL LTR ERVL -919 4845 4509 459 136 0 0 chr9 22596793 22596874 -95265753 + L1MA5A LINE L1 6214 6294 -3 597 343 22 11 chr9 22597180 22597542 -95265085 - L1M4 LINE L1 -2309 3837 3472 6209 193 52 11 chr9 22597593 22599603 -95263024 - L1MA2 LINE L1 0 6304 4208 298 265 173 19 chr9 22599612 22600092 -95262535 - L1M4 LINE L1 -2741 3405 2852 2834 7 0 0 chr9 22600102 22600407 -95262220 - AluYa5 SINE Alu -6 305 1 1002 119 6 11 chr9 22601122 22601299 -95261328 + (TTTC)n Simple_repeat Simple_repeat 4 179 0 372 94 0 0 chr9 22601300 22601353 -95261274 + (TCCC)n Simple_repeat Simple_repeat 4 56 0 189 0 0 0 chr9 22601740 22601761 -95260866 + (A)n Simple_repeat Simple_repeat 1 21 0 568 294 86 39 chr9 22602379 22602842 -95259785 - L1M4 LINE L1 -3316 2830 2346 4262 161 136 77 chr9 22602958 22603282 -95259345 - L1MC3 LINE L1 0 7785 7482 246 32 0 0 chr9 22603282 22603313 -95259314 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4262 161 136 77 chr9 22603313 22603575 -95259052 - L1MC3 LINE L1 -303 7482 7237 265 274 27 0 chr9 22603575 22603648 -95258979 - MLT1F1 LTR MaLR -442 125 51 4262 161 136 77 chr9 22603648 22603868 -95258759 - L1MC3 LINE L1 -548 7237 7031 342 0 0 0 chr9 22603868 22603906 -95258721 + (TG)n Simple_repeat Simple_repeat 2 39 0 4262 161 136 77 chr9 22603906 22604152 -95258475 - L1MC3 LINE L1 -754 7031 6801 297 51 0 0 chr9 22604152 22604191 -95258436 + (TG)n Simple_repeat Simple_repeat 2 40 0 4262 161 136 77 chr9 22604191 22604247 -95258380 - L1MC3 LINE L1 -984 6801 6532 740 275 55 50 chr9 22604244 22604641 -95257986 - HAL1 LINE L1 -1359 1148 750 * 881 197 74 77 chr9 22604644 22604954 -95257673 - Charlie4a DNA MER1_type 0 508 200 553 255 35 86 chr9 22604967 22605281 -95257346 - L1M4 LINE L1 -2376 3770 3473 251 252 107 48 chr9 22605289 22605392 -95257235 - MER21B LTR ERV1 -668 195 87 362 179 60 15 chr9 22605433 22605500 -95257127 - MER21B LTR ERV1 -767 96 27 1050 246 132 24 chr9 22605531 22606022 -95256605 - L1M4 LINE L1 -3288 2858 2315 738 296 67 3 chr9 22606046 22606330 -95256297 - L1ME1 LINE L1 -92 6074 5773 650 189 85 20 chr9 22606316 22606469 -95256158 - L1MC4 LINE L1 -1042 7000 6838 * 1735 191 30 0 chr9 22606470 22606930 -95255697 - AluJb SINE Alu 0 471 3 14448 187 16 13 chr9 22606945 22608435 -95254192 - L1PA15 LINE L1 0 6868 5384 2329 91 0 3 chr9 22608435 22608732 -95253895 - AluSx SINE Alu -16 296 1 14448 187 16 13 chr9 22608732 22611159 -95251468 - L1PA15 LINE L1 -1484 5384 2917 2317 203 19 72 chr9 22611159 22611744 -95250883 - MLT2B3 LTR ERVL 0 554 1 14448 187 16 13 chr9 22611744 22612742 -95249885 - L1PA15 LINE L1 -3951 2917 1924 671 186 0 0 chr9 22613192 22613310 -95249317 - MLT1A1 LTR MaLR -78 287 170 435 304 7 0 chr9 22613577 22613712 -95248915 + MER63 DNA MER1_type 1 762 -74 343 293 58 97 chr9 22613869 22614128 -95248499 - L1MEd LINE L1 -5870 249 1 222 156 0 0 chr9 22615077 22615122 -95247505 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 71 0 0 chr9 22615806 22615848 -95246779 + AT_rich Low_complexity Low_complexity 1 42 0 446 0 19 0 chr9 22616008 22616062 -95246565 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 1547 208 91 40 chr9 22616142 22616178 -95246449 - MLT2B2 LTR ERVL -66 449 416 2191 130 14 8 chr9 22616178 22616531 -95246096 + THE1A LTR MaLR 1 355 0 11383 91 19 6 chr9 22616531 22618090 -95244537 + THE1A-int LTR MaLR 1 1579 -1 2166 138 11 8 chr9 22618091 22618445 -95244182 + THE1A LTR MaLR 1 355 0 1547 208 91 40 chr9 22618445 22618832 -95243795 - MLT2B2 LTR ERVL -98 417 1 393 102 0 0 chr9 22618939 22618998 -95243629 + (TC)n Simple_repeat Simple_repeat 1 59 0 429 282 135 6 chr9 22619501 22619671 -95242956 + MIR SINE MIR 1 192 -70 1349 198 12 6 chr9 22619856 22620175 -95242452 - MER33 DNA MER1_type -3 321 1 200 190 13 152 chr9 22620870 22620949 -95241678 + MIR SINE MIR 179 246 -16 585 309 28 6 chr9 22620980 22621161 -95241466 - MIR SINE MIR -74 188 4 361 176 99 45 chr9 22621481 22621634 -95240993 + L1ME3A LINE L1 5790 5959 -203 235 301 32 45 chr9 22621696 22621852 -95240775 + L1ME3A LINE L1 5965 6118 -52 617 178 51 0 chr9 22622088 22622206 -95240421 - L2 LINE L2 0 3313 3190 598 53 0 0 chr9 22622354 22622429 -95240198 - AluY SINE Alu -225 85 11 483 229 0 0 chr9 22622866 22622971 -95239656 + L1PB4 LINE L1 6019 6123 -33 2444 60 3 16 chr9 22623388 22623702 -95238925 + AluY SINE Alu 1 310 -1 988 249 20 101 chr9 22623837 22624275 -95238352 - L2 LINE L2 0 3313 2911 198 271 0 0 chr9 22624604 22624652 -95237975 - MIR SINE MIR -111 151 104 195 42 0 0 chr9 22625099 22625123 -95237504 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 278 330 11 23 chr9 22625140 22625228 -95237399 - MIR SINE MIR -102 106 20 207 220 20 0 chr9 22625350 22625400 -95237227 + L2 LINE L2 2932 2982 -290 2301 180 45 17 chr9 22625433 22625949 -95236678 - L1MC3 LINE L1 -6 7779 7250 887 170 0 77 chr9 22626050 22626232 -95236395 + FRAM SINE Alu 1 160 -16 21 0 0 0 chr9 22626409 22626430 -95236197 + AT_rich Low_complexity Low_complexity 1 21 0 2133 126 7 0 chr9 22627110 22627419 -95235208 + AluSx SINE Alu 1 311 -1 234 345 132 11 chr9 22627421 22627595 -95235032 + MIR3 SINE MIR 5 199 -9 2508 58 0 7 chr9 22627606 22627914 -95234713 - AluY SINE Alu -5 306 1 2508 71 0 6 chr9 22629911 22630222 -95232405 + AluSp SINE Alu 1 309 -4 491 316 14 46 chr9 22630445 22630663 -95231964 + MIR SINE MIR 4 214 -48 4043 89 11 0 chr9 22630685 22631233 -95231394 - MER41A LTR ERV1 0 554 1 341 328 13 9 chr9 22632673 22632806 -95229821 - MIR SINE MIR -58 150 14 732 115 0 0 chr9 22633229 22633342 -95229285 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 367 281 161 68 chr9 22633447 22633857 -95228770 + MLT1H LTR MaLR 86 533 -16 300 330 147 0 chr9 22636628 22636737 -95225890 + L2 LINE L2 3148 3272 0 182 238 29 124 chr9 22636739 22636844 -95225783 + L2 LINE L2 3218 3312 -1 23 68 0 0 chr9 22637257 22637301 -95225326 + AT_rich Low_complexity Low_complexity 1 44 0 723 285 35 31 chr9 22637547 22637937 -95224690 + L1ME LINE L1 5395 5785 -377 28 29 0 0 chr9 22637998 22638033 -95224594 + AT_rich Low_complexity Low_complexity 1 35 0 270 282 0 0 chr9 22638226 22638311 -95224316 + L1MC4 LINE L1 7929 8013 -29 226 250 80 0 chr9 22638401 22638489 -95224138 + MER103 DNA DNA 36 130 -36 410 316 137 38 chr9 22639261 22639766 -95222861 + L2 LINE L2 2685 3264 -8 515 282 98 0 chr9 22640034 22640197 -95222430 - MIR SINE MIR -81 181 3 443 143 0 12 chr9 22640253 22640337 -95222290 + (TTCC)n Simple_repeat Simple_repeat 3 85 0 1975 147 3 0 chr9 22640360 22640660 -95221967 - AluSq SINE Alu -12 301 1 363 313 80 42 chr9 22641015 22641259 -95221368 + MIR SINE MIR 5 251 -11 364 258 45 76 chr9 22641286 22641418 -95221209 + MIR SINE MIR 134 261 -1 2214 85 0 4 chr9 22641891 22642172 -95220455 - AluSg SINE Alu -5 305 26 225 373 20 10 chr9 22642302 22642404 -95220223 + MIR SINE MIR 22 124 -84 235 200 0 0 chr9 22642572 22642612 -95220015 - MIR SINE MIR -5 257 218 351 302 8 43 chr9 22643853 22644001 -95218626 - MIR SINE MIR -46 162 20 4249 170 54 20 chr9 22645153 22646602 -95216025 + L1MB3 LINE L1 4675 6173 -10 269 333 0 56 chr9 22647362 22647470 -95215157 - L2 LINE L2 -1 3312 3211 198 103 0 0 chr9 22648004 22648033 -95214594 + (T)n Simple_repeat Simple_repeat 1 29 0 186 286 32 32 chr9 22649389 22649452 -95213175 + L2 LINE L2 3196 3258 -14 221 288 108 0 chr9 22649464 22649575 -95213052 - L3b LINE CR1 -242 1341 1219 385 255 28 117 chr9 22650593 22650840 -95211787 + LTR33 LTR ERVL 3 227 -294 487 271 47 0 chr9 22650895 22651024 -95211603 + LTR33 LTR ERVL 25 159 -362 542 288 78 78 chr9 22651515 22651963 -95210664 + L2 LINE L2 2865 3312 -1 403 352 21 0 chr9 22652148 22652290 -95210337 + MIR SINE MIR 9 153 -109 327 337 11 0 chr9 22652408 22652503 -95210124 + L2 LINE L2 3214 3309 -4 212 313 69 62 chr9 22652531 22652691 -95209936 - MIR SINE MIR -11 251 91 475 289 31 19 chr9 22653091 22653296 -95209331 + MIR SINE MIR 30 238 -24 207 0 0 0 chr9 22653661 22653684 -95208943 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 210 274 132 57 chr9 22654288 22654394 -95208233 + L2 LINE L2 3152 3265 -7 404 322 0 55 chr9 22655189 22655388 -95207239 + MER5A DNA MER1_type 2 189 0 685 161 32 0 chr9 22655751 22655875 -95206752 + FLAM_A SINE Alu 4 131 -2 1125 245 19 0 chr9 22656179 22656436 -95206191 - MIR SINE MIR 0 262 1 186 43 0 0 chr9 22657852 22657875 -95204752 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1523 181 32 7 chr9 22657920 22658201 -95204426 + AluJb SINE Alu 3 290 -22 1847 37 0 0 chr9 22658329 22658545 -95204082 + AluY SINE Alu 96 311 0 2560 67 0 3 chr9 22659040 22659354 -95203273 - AluSq SINE Alu 0 313 1 270 150 0 70 chr9 22659621 22659721 -95202906 + (TTTTC)n Simple_repeat Simple_repeat 2 94 0 205 347 14 0 chr9 22660952 22661024 -95201603 + L2 LINE L2 3200 3272 0 387 60 0 0 chr9 22661487 22661537 -95201090 + (CA)n Simple_repeat Simple_repeat 1 50 0 315 246 33 25 chr9 22661971 22662093 -95200534 + L1ME LINE L1 5328 5450 -2358 27 0 0 0 chr9 22662109 22662136 -95200491 + AT_rich Low_complexity Low_complexity 1 27 0 233 266 44 26 chr9 22662220 22662333 -95200294 + L1ME LINE L1 5636 5750 -371 558 346 51 8 chr9 22662763 22663017 -95199610 + L3 LINE CR1 914 1178 -399 214 322 167 52 chr9 22663337 22663607 -95199020 + L3 LINE CR1 1272 1572 -5 431 287 86 6 chr9 22664449 22664623 -95198004 - MIR SINE MIR -14 248 61 1431 179 0 12 chr9 22664820 22665066 -95197561 + AluJb SINE Alu 39 281 -31 387 0 0 0 chr9 22665067 22665110 -95197517 + (CA)n Simple_repeat Simple_repeat 2 44 0 538 272 118 18 chr9 22665180 22665459 -95197168 - L1MC5 LINE L1 -49 7912 7606 848 258 83 17 chr9 22665718 22665958 -95196669 + MIR SINE MIR 6 261 -1 192 179 0 0 chr9 22665961 22666000 -95196627 + (CAT)n Simple_repeat Simple_repeat 1 39 0 294 333 46 9 chr9 22666513 22666621 -95196006 - L2 LINE L2 -8 3264 3153 538 236 74 69 chr9 22667713 22667916 -95194711 + MIR SINE MIR 18 221 -41 429 258 88 92 chr9 22667931 22668214 -95194413 + MLT1K LTR MaLR 305 586 -2 711 220 134 9 chr9 22668354 22668586 -95194041 + MIR SINE MIR 2 262 0 346 272 225 6 chr9 22668639 22668812 -95193815 + L2 LINE L2 3103 3313 0 218 306 12 56 chr9 22668803 22668906 -95193721 - MIR SINE MIR -107 101 16 * 383 361 42 24 chr9 22668981 22669147 -95193480 + MIR3 SINE MIR 16 184 -24 25 0 0 0 chr9 22670349 22670374 -95192253 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 22670791 22670812 -95191815 + AT_rich Low_complexity Low_complexity 1 21 0 417 273 136 11 chr9 22672471 22672647 -95189980 + MIR SINE MIR 29 226 -36 271 338 0 0 chr9 22673263 22673340 -95189287 + L2 LINE L2 3188 3264 -8 185 330 140 0 chr9 22674510 22674610 -95188017 - L2 LINE L2 -18 3254 3141 309 26 0 0 chr9 22675328 22675366 -95187261 + (TC)n Simple_repeat Simple_repeat 1 38 0 283 340 77 26 chr9 22675383 22675577 -95187050 - MIR SINE MIR -32 230 27 229 270 68 0 chr9 22675986 22676060 -95186567 - MER5A DNA MER1_type -77 112 34 21 36 0 0 chr9 22677398 22677426 -95185201 + AT_rich Low_complexity Low_complexity 1 28 0 39 0 0 0 chr9 22677935 22677974 -95184653 + AT_rich Low_complexity Low_complexity 1 39 0 284 227 11 0 chr9 22678039 22678127 -95184500 + (TA)n Simple_repeat Simple_repeat 1 89 0 24 96 0 0 chr9 22679138 22679211 -95183416 + AT_rich Low_complexity Low_complexity 1 73 0 317 196 21 21 chr9 22680617 22680714 -95181913 + (CGG)n Simple_repeat Simple_repeat 3 99 0 31 0 0 0 chr9 22684104 22684135 -95178492 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr9 22686141 22686173 -95176454 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr9 22686584 22686626 -95176001 + AT_rich Low_complexity Low_complexity 1 42 0 555 305 72 21 chr9 22686806 22687042 -95175585 - MIR SINE MIR -10 252 5 320 338 96 32 chr9 22687058 22687372 -95175255 - MARNA DNA Mariner -148 438 105 21 36 0 0 chr9 22689414 22689442 -95173185 + AT_rich Low_complexity Low_complexity 1 28 0 230 388 29 0 chr9 22690025 22690128 -95172499 - MIR SINE MIR -83 125 20 233 314 47 0 chr9 22690227 22690313 -95172314 - MER103 DNA DNA -74 92 3 607 194 50 14 chr9 22690403 22690542 -95172085 - MIR SINE MIR -11 251 108 976 124 214 0 chr9 22690594 22690772 -95171855 - MER20 DNA MER1_type 0 219 4 264 59 0 0 chr9 22691088 22691122 -95171505 + (CA)n Simple_repeat Simple_repeat 2 35 0 354 225 113 53 chr9 22691445 22691596 -95171031 + MIR SINE MIR 45 204 -58 229 320 39 13 chr9 22691946 22692024 -95170603 - L2 LINE L2 -24 3289 3210 384 200 83 8 chr9 22692064 22692184 -95170443 + MER117 DNA MER1_type 28 156 -41 861 212 71 9 chr9 22692204 22692430 -95170197 - MER112 DNA MER1_type -7 253 14 198 0 0 0 chr9 22694587 22694609 -95168018 + (A)n Simple_repeat Simple_repeat 1 22 0 24 53 0 0 chr9 22694809 22694847 -95167780 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr9 22695235 22695255 -95167372 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr9 22695376 22695406 -95167221 + AT_rich Low_complexity Low_complexity 1 30 0 2282 138 8 8 chr9 22695840 22696218 -95166409 + L1PB3 LINE L1 5777 6154 0 2115 137 73 14 chr9 22696338 22696682 -95165945 - THE1B LTR MaLR 0 364 1 255 362 34 34 chr9 22697461 22697610 -95165017 + L2 LINE L2 2910 3058 -214 397 272 96 41 chr9 22697932 22698296 -95164331 - L1ME4a LINE L1 -22 6099 5716 36832 30 1 0 chr9 22698595 22703837 -95158790 - L1PA2 LINE L1 -2 6153 908 819 21 0 0 chr9 22703835 22703930 -95158697 - L1PA2 LINE L1 -6048 98 4 * 303 393 27 18 chr9 22704130 22704349 -95158278 - LTR33 LTR ERVL -230 291 71 404 288 28 34 chr9 22705201 22705378 -95157249 - MER5B DNA MER1_type -2 176 1 1134 205 24 139 chr9 22707786 22708195 -95154432 - MLT1A2 LTR MaLR -7 367 6 460 303 50 75 chr9 22708287 22708528 -95154099 - MIR SINE MIR -16 246 12 12199 125 36 41 chr9 22709527 22711624 -95151003 + Tigger1 DNA MER2_type 1 2087 -331 6158 218 84 3 chr9 22711634 22712874 -95149753 + L1PA13 LINE L1 1 1340 -5447 17864 176 29 41 chr9 22712875 22714177 -95148450 + L1PA13 LINE L1 1482 2798 -4016 5781 109 20 2 chr9 22714177 22715358 -95147269 + L1PA13 LINE L1 4939 6156 -7 17864 176 29 41 chr9 22715358 22718598 -95144029 + L1PA13 LINE L1 2798 5949 -865 2078 111 45 0 chr9 22718598 22718927 -95143700 + L1PA10 LINE L1 5812 6158 -10 17864 176 29 41 chr9 22718927 22719782 -95142845 + L1PA13 LINE L1 5949 6813 -1 1857 148 55 6 chr9 22719791 22720116 -95142511 + Tigger1 DNA MER2_type 2078 2418 0 221 301 106 9 chr9 22720234 22720347 -95142280 - L2 LINE L2 -7 3306 3183 391 296 60 50 chr9 22721011 22721210 -95141417 + MIR SINE MIR 21 221 -41 1268 211 28 102 chr9 22721317 22721711 -95140916 - MLT1A1 LTR MaLR 0 365 1 375 346 119 7 chr9 22722617 22722886 -95139741 + L2 LINE L2 2461 2759 -555 212 311 66 0 chr9 22723818 22723879 -95138748 + L2 LINE L2 3248 3312 -1 232 293 38 38 chr9 22723883 22724016 -95138611 + MIR SINE MIR 74 206 -56 21 36 0 0 chr9 22724674 22724702 -95137925 + AT_rich Low_complexity Low_complexity 1 28 0 200 244 22 0 chr9 22724702 22724747 -95137880 + (CATATA)n Simple_repeat Simple_repeat 5 50 0 232 178 0 0 chr9 22725067 22725114 -95137513 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 1308 188 92 19 chr9 22726206 22726477 -95136150 - AluJo SINE Alu -11 291 1 26 0 0 0 chr9 22727191 22727217 -95135410 + AT_rich Low_complexity Low_complexity 1 26 0 462 289 32 32 chr9 22727349 22727539 -95135088 - L1MC/D LINE L1 -2007 5801 5612 1528 199 7 10 chr9 22727551 22727842 -95134785 + AluJo SINE Alu 1 290 -22 717 242 224 52 chr9 22728512 22728937 -95133690 + L2 LINE L2 2807 3304 -9 309 280 182 0 chr9 22729126 22729269 -95133358 + MIR SINE MIR 2 170 -92 432 296 62 40 chr9 22730555 22730731 -95131896 - MER5A DNA MER1_type 0 189 10 2196 104 0 0 chr9 22730731 22731018 -95131609 + AluSx SINE Alu 1 287 -25 208 188 31 0 chr9 22731018 22731082 -95131545 + (TA)n Simple_repeat Simple_repeat 1 66 0 286 331 86 43 chr9 22731608 22731747 -95130880 + MIR3 SINE MIR 3 147 -61 33 0 0 0 chr9 22732294 22732327 -95130300 + AT_rich Low_complexity Low_complexity 1 33 0 657 202 8 8 chr9 22732540 22732669 -95129958 + FLAM_A SINE Alu 1 129 -4 257 214 127 48 chr9 22732779 22732905 -95129722 - MER113 DNA MER1_type? -380 141 6 189 0 0 0 chr9 22734385 22734406 -95128221 + (A)n Simple_repeat Simple_repeat 1 21 0 350 361 130 40 chr9 22734708 22735670 -95126957 + L2 LINE L2 1686 2734 -580 193 419 0 0 chr9 22736106 22736199 -95126428 + L2 LINE L2 3208 3300 -13 315 49 0 0 chr9 22736267 22736308 -95126319 + (CA)n Simple_repeat Simple_repeat 2 42 0 220 163 41 20 chr9 22737967 22738016 -95124611 + L2 LINE L2 3262 3311 -2 261 307 67 53 chr9 22740956 22741106 -95121521 - MIR SINE MIR -48 214 63 402 56 28 14 chr9 22741365 22741436 -95121191 + (CA)n Simple_repeat Simple_repeat 2 73 0 227 311 137 38 chr9 22741542 22741754 -95120873 - MIR SINE MIR -10 252 20 1592 274 98 47 chr9 22741979 22742911 -95119716 - L1MEc LINE L1 -5382 1014 36 534 220 40 40 chr9 22743073 22743223 -95119404 + MIR SINE MIR 102 251 -11 222 303 30 0 chr9 22743766 22743832 -95118795 + MIR SINE MIR 195 262 0 211 243 9 140 chr9 22744337 22744444 -95118183 - L2 LINE L2 0 3313 3221 396 316 74 63 chr9 22744805 22745172 -95117455 + L2 LINE L2 1631 2001 -1313 2259 106 0 0 chr9 22745200 22745492 -95117135 - AluSq SINE Alu -21 292 1 3500 112 0 50 chr9 22745681 22746236 -95116391 + MER1A DNA MER1_type 1 527 0 332 233 117 10 chr9 22746295 22746398 -95116229 + L2 LINE L2 3200 3313 0 795 297 40 12 chr9 22746655 22746904 -95115723 - MIR SINE MIR -3 259 4 811 245 100 53 chr9 22747161 22747336 -95115291 - L1MC4 LINE L1 -165 7877 7712 2146 132 0 0 chr9 22747336 22747631 -95114996 - AluSx SINE Alu -15 297 3 811 245 100 53 chr9 22747631 22747794 -95114833 - L1MC4 LINE L1 -330 7712 7523 192 191 21 43 chr9 22748023 22748070 -95114557 + MIR3 SINE MIR 153 198 -10 250 312 0 65 chr9 22748939 22749016 -95113611 + Zaphod DNA AcHobo 2 73 -3958 1196 254 144 5 chr9 22749071 22749461 -95113166 + Zaphod DNA AcHobo 65 508 -3523 303 0 0 0 chr9 22749463 22749497 -95113130 + LTR7 LTR ERV1 415 448 -2 18000 81 21 28 chr9 22749499 22752148 -95110479 + HERVH LTR ERV1 1 2629 -5084 1201 179 61 0 chr9 22752142 22752435 -95110192 + HERVH LTR ERV1 2883 5819 -1894 * 2408 91 53 5 chr9 22752433 22752807 -95109820 + HERVH LTR ERV1 7322 7713 0 3039 63 5 10 chr9 22752807 22753221 -95109406 + LTR7 LTR ERV1 1 412 -38 1270 204 53 39 chr9 22753238 22753724 -95108903 + Zaphod DNA AcHobo 496 988 -3043 902 218 62 76 chr9 22753724 22753894 -95108733 - MER58A DNA MER1_type -2196 224 56 2451 83 0 3 chr9 22753894 22754206 -95108421 + AluY SINE Alu 1 311 0 902 218 62 76 chr9 22754206 22754260 -95108367 - MER58A DNA MER1_type -2364 56 3 3824 248 64 12 chr9 22754275 22756951 -95105676 + L1MEc LINE L1 27 2941 -3274 390 42 0 0 chr9 22757196 22757244 -95105383 + (TC)n Simple_repeat Simple_repeat 1 48 0 355 299 80 5 chr9 22758064 22758251 -95104376 - L1ME LINE L1 -299 5822 5622 293 184 184 10 chr9 22759912 22760010 -95102617 + L1MC4a LINE L1 5313 5427 -2381 686 278 137 32 chr9 22760028 22760137 -95102490 + L1MC4a LINE L1 5552 5648 -2160 2263 92 0 0 chr9 22760137 22760456 -95102171 + AluSg SINE Alu 1 319 0 686 278 137 32 chr9 22760456 22760687 -95101940 + L1MC4a LINE L1 5648 5929 -1879 22 88 0 0 chr9 22760823 22760880 -95101747 + AT_rich Low_complexity Low_complexity 1 57 0 279 321 33 87 chr9 22761643 22761827 -95100800 - MIR SINE MIR -66 196 23 195 42 0 0 chr9 22761876 22761900 -95100727 + (TAA)n Simple_repeat Simple_repeat 2 25 0 29 28 0 0 chr9 22762566 22762602 -95100025 + AT_rich Low_complexity Low_complexity 1 36 0 796 164 0 22 chr9 22762607 22762741 -95099886 + FLAM_C SINE Alu 1 131 -12 820 201 13 0 chr9 22762781 22762940 -95099687 - MER5A DNA MER1_type -14 175 15 180 0 0 0 chr9 22763224 22763244 -95099383 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 706 281 99 36 chr9 22763456 22763758 -95098869 + LTR16A LTR ERVL 113 433 -17 2411 102 0 0 chr9 22764461 22764774 -95097853 - AluSq SINE Alu 0 313 1 194 62 31 0 chr9 22766109 22766141 -95096486 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 207 0 0 0 chr9 22766281 22766304 -95096323 + (CA)n Simple_repeat Simple_repeat 2 24 0 399 245 151 14 chr9 22767220 22767359 -95095268 + MIR SINE MIR 92 249 -13 22 56 0 0 chr9 22767610 22767646 -95094981 + AT_rich Low_complexity Low_complexity 1 36 0 297 307 67 27 chr9 22767846 22768071 -95094556 + L1MC/D LINE L1 5574 5807 -2001 354 298 68 29 chr9 22769813 22770018 -95092609 - MLT1J1 LTR MaLR -233 213 1 383 303 134 31 chr9 22771046 22771300 -95091327 + L2 LINE L2 2221 2500 -814 323 180 33 0 chr9 22771692 22771753 -95090874 + MER5B DNA MER1_type 116 178 0 28 0 0 0 chr9 22771969 22771997 -95090630 + AT_rich Low_complexity Low_complexity 1 28 0 267 31 0 0 chr9 22772054 22772086 -95090541 + (T)n Simple_repeat Simple_repeat 1 32 0 1054 234 173 53 chr9 22772545 22773333 -95089294 + L1ME3A LINE L1 4510 5391 -755 356 283 37 11 chr9 22773328 22773538 -95089089 + L1ME3A LINE L1 5814 6028 -142 * 1903 155 37 3 chr9 22774493 22774789 -95087838 - AluJb SINE Alu -6 306 1 968 158 30 5 chr9 22775428 22775631 -95086996 + L1PA13 LINE L1 1591 1798 -5041 * 3526 228 12 5 chr9 22775630 22776648 -95085979 + L1PA13 LINE L1 2067 3096 -3753 1091 95 60 6 chr9 22776648 22776816 -95085811 + THE1B LTR MaLR 1 177 -187 2270 110 54 25 chr9 22776828 22777182 -95085445 + THE1B LTR MaLR 1 364 0 2613 153 21 0 chr9 22777274 22777692 -95084935 - MSTA LTR MaLR -1 427 1 4121 248 87 15 chr9 22779114 22780386 -95082241 + L1M4 LINE L1 2865 4283 -1863 252 0 0 0 chr9 22780386 22780414 -95082213 + (CA)n Simple_repeat Simple_repeat 1 28 0 4121 248 87 15 chr9 22780414 22780777 -95081850 + L1M4 LINE L1 4283 4618 -1528 14255 51 2 0 chr9 22780782 22783354 -95079273 - L1PA6 LINE L1 -1 6153 3578 214 260 158 8 chr9 22783852 22783979 -95078648 + L2 LINE L2 3104 3249 -64 23 33 0 0 chr9 22784215 22784245 -95078382 + AT_rich Low_complexity Low_complexity 1 30 0 1341 165 120 23 chr9 22785243 22785552 -95077075 - MER1B DNA MER1_type 0 339 1 218 222 0 48 chr9 22787454 22787510 -95075117 - MIR SINE MIR 0 262 208 1758 178 7 3 chr9 22787510 22787802 -95074825 - AluJb SINE Alu -19 293 1 2134 156 0 0 chr9 22788198 22788506 -95074121 - AluSx SINE Alu -4 308 1 523 124 152 9 chr9 22789023 22789128 -95073499 + MSTB1 LTR MaLR 286 405 -27 1134 254 32 17 chr9 22789154 22789500 -95073127 - MER87 LTR ERV1 -23 518 168 2702 201 34 16 chr9 22789765 22790331 -95072296 - MER6 DNA MER2_type -289 576 1 893 249 4 34 chr9 22792412 22792645 -95069982 - LTR49-int LTR ERV1 -4196 2135 1910 273 98 176 0 chr9 22792645 22792696 -95069931 + MER31A LTR ERV1 247 306 -179 1577 187 37 107 chr9 22792741 22793314 -95069313 - LTR49-int LTR ERV1 -4426 1905 1373 3156 179 14 17 chr9 22793749 22794384 -95068243 - MER39 LTR ERV1 0 707 75 2146 124 13 0 chr9 22794700 22795007 -95067620 - AluSx SINE Alu -1 311 1 25 83 0 0 chr9 22795009 22795069 -95067558 + AT_rich Low_complexity Low_complexity 1 60 0 369 157 11 22 chr9 22795075 22795164 -95067463 + (TA)n Simple_repeat Simple_repeat 2 89 0 1140 128 0 6 chr9 22796577 22796733 -95065894 - AluSq SINE Alu -71 242 88 238 296 129 8 chr9 22796739 22796871 -95065756 - MIR SINE MIR -33 229 82 2460 73 0 6 chr9 22796989 22797302 -95065325 - AluY SINE Alu 0 311 1 34 65 0 0 chr9 22797791 22797853 -95064774 + AT_rich Low_complexity Low_complexity 1 62 0 1208 121 59 4 chr9 22798193 22798557 -95064070 - MSTA LTR MaLR -1 427 1 264 370 133 0 chr9 22798559 22798829 -95063798 + L2 LINE L2 2027 2332 -982 24 67 0 0 chr9 22799296 22799341 -95063286 + AT_rich Low_complexity Low_complexity 1 45 0 814 186 64 108 chr9 22800233 22800558 -95062069 - MER106B DNA MER1_type -2 1057 754 1984 123 0 50 chr9 22800558 22800875 -95061752 + AluSg1 SINE Alu 1 301 -8 814 186 64 108 chr9 22800875 22800985 -95061642 - MER106B DNA MER1_type -305 754 641 21 36 0 0 chr9 22800998 22801026 -95061601 + AT_rich Low_complexity Low_complexity 1 28 0 1917 227 62 25 chr9 22801045 22801685 -95060942 + L1 LINE L1 3524 4187 -1959 2128 219 48 16 chr9 22802674 22803237 -95059390 - MER106B DNA MER1_type -476 583 3 186 302 16 32 chr9 22804171 22804234 -95058393 - MIR SINE MIR -99 163 102 364 258 0 0 chr9 22804992 22805085 -95057542 - MER31B LTR ERV1 0 466 374 2049 130 94 8 chr9 22805092 22805476 -95057151 - MSTA LTR MaLR -11 417 1 934 156 65 35 chr9 22805476 22805696 -95056931 - MER31B LTR ERV1 -88 378 152 3632 106 4 4 chr9 22806158 22806669 -95055958 - MER9 LTR ERVK 0 511 1 1403 134 4 11 chr9 22807961 22808223 -95054404 - L1MA4A LINE L1 0 6303 6044 28 48 0 0 chr9 22808491 22808533 -95054094 + AT_rich Low_complexity Low_complexity 1 42 0 542 211 10 0 chr9 22808591 22808695 -95053932 - L1M2c LINE L1 -5613 1176 1072 * 2764 152 10 35 chr9 22808690 22809269 -95053358 + L1 LINE L1 4166 4730 -1416 22 80 0 0 chr9 22809398 22809448 -95053179 + AT_rich Low_complexity Low_complexity 1 50 0 300 27 0 0 chr9 22811126 22811163 -95051464 + (CA)n Simple_repeat Simple_repeat 1 37 0 15638 143 9 6 chr9 22812109 22816451 -95046176 + L1P4 LINE L1 1335 5687 -481 2016 126 51 0 chr9 22816452 22816746 -95045881 + AluSx SINE Alu 1 309 -3 6524 210 42 3 chr9 22816746 22816836 -95045791 + L1P LINE L1 3501 3586 -2560 198 0 0 0 chr9 22816836 22816858 -95045769 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 6524 210 42 3 chr9 22816858 22818225 -95044402 + L1P LINE L1 3586 5014 -1132 553 180 51 73 chr9 22818227 22818405 -95044222 + L1MA9 LINE L1 6130 6303 -9 457 361 123 11 chr9 22818491 22819037 -95043590 + L2 LINE L2 1722 2328 -986 277 300 50 40 chr9 22819117 22819317 -95043310 + L2 LINE L2 3112 3313 0 2072 134 13 0 chr9 22821821 22822126 -95040501 - AluSc SINE Alu 0 309 1 1454 266 28 30 chr9 22824038 22824470 -95038157 - LTR47B LTR ERVL -2 441 11 199 54 54 0 chr9 22825535 22825572 -95037055 + T-rich Low_complexity Low_complexity 2 40 0 3624 209 10 10 chr9 22826266 22826970 -95035657 + L1M1 LINE L1 15 718 -6847 1990 108 11 14 chr9 22826970 22827256 -95035371 - THE1A LTR MaLR 0 355 71 203 299 124 10 chr9 22828673 22828770 -95033857 - MIR SINE MIR -38 224 117 43 64 0 0 chr9 22829407 22829485 -95033142 + AT_rich Low_complexity Low_complexity 1 78 0 267 338 168 20 chr9 22829618 22830059 -95032568 + L2 LINE L2 1817 2322 -992 21 82 0 0 chr9 22830402 22830451 -95032176 + AT_rich Low_complexity Low_complexity 1 49 0 209 217 0 0 chr9 22830549 22830595 -95032032 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 2532 213 57 57 chr9 22831556 22832612 -95030015 - MER106B DNA MER1_type -1 1058 3 1734 201 41 27 chr9 22833303 22833856 -95028771 + MLT2A2 LTR ERVL 1 554 0 282 268 42 0 chr9 22834050 22834121 -95028506 - L2 LINE L2 -17 3296 3223 266 317 64 40 chr9 22836383 22836573 -95026054 + MLT1J2 LTR MaLR 263 448 -2 353 128 39 69 chr9 22838510 22838612 -95024015 - MER96B DNA MER1_type? -240 177 79 246 230 24 9 chr9 22838620 22838838 -95023789 + (TA)n Simple_repeat Simple_repeat 1 221 0 1394 162 49 4 chr9 22838851 22839116 -95023511 + MER49 LTR ERV1 4 280 -643 405 254 0 23 chr9 22839105 22839227 -95023400 + MER4E LTR ERV1 59 284 -588 * 1791 193 3 9 chr9 22839225 22839562 -95023065 + MER4D LTR ERV1 547 881 -22 2478 99 22 17 chr9 22839779 22840141 -95022486 - THE1B LTR MaLR 0 364 1 192 323 65 40 chr9 22840186 22840310 -95022317 - MIR SINE MIR -66 196 70 204 349 28 9 chr9 22840424 22840533 -95022094 + L2 LINE L2 3161 3271 -1 2262 105 3 6 chr9 22840713 22841026 -95021601 + AluSx SINE Alu 1 312 0 560 154 0 0 chr9 22842588 22842679 -95019948 + FRAM SINE Alu 49 139 -37 952 186 0 40 chr9 22846407 22846584 -95016043 + FRAM SINE Alu 1 169 -7 375 224 59 110 chr9 22846584 22846803 -95015824 - L1ME3A LINE L1 -19 6151 5944 503 278 119 6 chr9 22846806 22846982 -95015645 - MIR SINE MIR -38 224 29 655 64 11 0 chr9 22846986 22847080 -95015547 - AluSg/x SINE Alu -22 288 194 2238 155 56 12 chr9 22848468 22848882 -95013745 + Tigger2a DNA MER2_type 2 433 -1 206 256 13 0 chr9 22849011 22849089 -95013538 + (TA)n Simple_repeat Simple_repeat 2 80 0 201 74 0 0 chr9 22849392 22849419 -95013208 + (CA)n Simple_repeat Simple_repeat 2 28 0 4920 223 32 26 chr9 22849844 22851233 -95011394 - L1 LINE L1 -1853 4293 2897 2750 181 21 40 chr9 22852045 22852540 -95010087 + L1M1 LINE L1 3128 3630 -3935 1870 159 0 17 chr9 22852540 22852859 -95009768 + AluSx SINE Alu 1 314 0 2750 181 21 40 chr9 22852859 22853455 -95009172 + L1M1 LINE L1 3630 4220 -3345 584 218 24 0 chr9 22853458 22853623 -95009004 + L1M1 LINE L1 4675 4843 -2722 1627 196 16 68 chr9 22853727 22854167 -95008460 + L1M1 LINE L1 4851 5267 -2298 1850 101 12 0 chr9 22854187 22854444 -95008183 - L1MA2 LINE L1 -431 5873 5614 1543 185 0 0 chr9 22854444 22854729 -95007898 + L1MA3 LINE L1 6013 6299 -6 422 225 118 57 chr9 22854739 22855019 -95007608 + MER106B DNA MER1_type 761 1057 -2 38 22 0 0 chr9 22855987 22856032 -95006595 + AT_rich Low_complexity Low_complexity 1 45 0 269 307 158 13 chr9 22856509 22856737 -95005890 - L2 LINE L2 -978 2336 2076 576 163 0 54 chr9 22856807 22856936 -95005691 + FRAM SINE Alu 54 175 -1 21 36 0 0 chr9 22857228 22857256 -95005371 + AT_rich Low_complexity Low_complexity 1 28 0 302 281 116 30 chr9 22857882 22858046 -95004581 + MIR SINE MIR 82 259 -3 22 35 0 0 chr9 22859285 22859314 -95003313 + AT_rich Low_complexity Low_complexity 1 29 0 3260 170 64 24 chr9 22859926 22860567 -95002060 + MER39 LTR ERV1 2 707 0 318 246 93 71 chr9 22860622 22860805 -95001822 + MER39-int LTR ERV1 64 250 -6081 300 169 56 0 chr9 22860787 22860858 -95001769 + MER39-int LTR ERV1 1296 1370 -4961 * 1004 208 85 142 chr9 22861042 22861831 -95000796 + MER39-int LTR ERV1 1392 2135 -4196 1863 254 73 8 chr9 22861977 22862771 -94999856 - L1M4 LINE L1 -1158 5224 4379 5169 177 78 31 chr9 22863136 22864311 -94998316 - L1M4 LINE L1 -5136 1248 19 3626 241 70 36 chr9 22864578 22865571 -94997056 + L1MD3 LINE L1 6126 7084 -911 7583 29 1 0 chr9 22865571 22867167 -94995460 + L1PA3 LINE L1 4558 6155 0 3626 241 70 36 chr9 22867167 22867725 -94994902 + L1MD3 LINE L1 7084 7826 -169 2070 117 10 7 chr9 22867725 22868032 -94994595 - AluSc SINE Alu -1 308 1 3626 241 70 36 chr9 22868032 22868194 -94994433 + L1MD3 LINE L1 7826 7981 -14 25 0 0 0 chr9 22868234 22868259 -94994368 + AT_rich Low_complexity Low_complexity 1 25 0 1536 217 33 62 chr9 22868366 22868753 -94993874 + MER31B LTR ERV1 1 373 -93 2132 133 102 8 chr9 22868753 22869144 -94993483 + MSTA LTR MaLR 1 428 0 1536 217 33 62 chr9 22869144 22869236 -94993391 + MER31B LTR ERV1 373 466 0 215 335 225 5 chr9 22869922 22870113 -94992514 + MIR SINE MIR 19 251 -11 1852 127 45 38 chr9 22870223 22870514 -94992113 - AluSq SINE Alu -20 293 1 710 128 0 0 chr9 22870906 22871008 -94991619 - AluS SINE Alu -211 102 1 3032 197 61 53 chr9 22871293 22872339 -94990288 + MER106B DNA MER1_type 3 1057 -2 208 322 180 19 chr9 22873767 22873978 -94988649 - L2 LINE L2 -1003 2311 2067 345 47 0 0 chr9 22874058 22874101 -94988526 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 156 0 0 chr9 22874101 22874133 -94988494 + (TA)n Simple_repeat Simple_repeat 2 33 0 316 178 56 56 chr9 22874133 22874223 -94988404 - L1MC4 LINE L1 -1339 6703 6614 1704 152 64 10 chr9 22874295 22874592 -94988035 + AluSq SINE Alu 1 313 0 2747 164 103 18 chr9 22874901 22875516 -94987111 + MER39 LTR ERV1 1 707 0 260 205 39 0 chr9 22875744 22875822 -94986805 + LTR49-int LTR ERV1 1302 1382 -4949 1661 188 33 79 chr9 22875957 22876478 -94986149 + LTR49-int LTR ERV1 1373 1869 -4462 293 62 188 0 chr9 22876542 22876590 -94986037 - MER31A LTR ERV1 -182 303 247 790 230 0 89 chr9 22876590 22876838 -94985789 + LTR49-int LTR ERV1 1910 2135 -4196 22 80 0 0 chr9 22877806 22877856 -94984771 + AT_rich Low_complexity Low_complexity 1 50 0 2737 196 51 7 chr9 22878945 22879155 -94983472 + MER6 DNA MER2_type 5 204 -661 366 42 0 0 chr9 22879155 22879203 -94983424 + (TG)n Simple_repeat Simple_repeat 2 49 0 2737 196 51 7 chr9 22879203 22879538 -94983089 + MER6 DNA MER2_type 204 574 -291 1153 230 28 12 chr9 22879855 22880181 -94982446 + MER87 LTR ERV1 211 541 0 491 135 154 10 chr9 22880187 22880291 -94982336 - MSTB1 LTR MaLR -28 404 286 1805 124 0 50 chr9 22880493 22880775 -94981852 - AluSx SINE Alu -15 297 30 1979 124 43 0 chr9 22881081 22881363 -94981264 + AluSx SINE Alu 11 304 -8 231 245 0 85 chr9 22881711 22881760 -94980867 + MIR SINE MIR 166 203 -59 1715 173 32 0 chr9 22881760 22882044 -94980583 + AluJb SINE Alu 1 293 -19 231 245 0 85 chr9 22882044 22882100 -94980527 + MIR SINE MIR 203 262 0 1965 128 28 0 chr9 22883648 22883770 -94978857 + AluSx SINE Alu 1 118 -194 537 30 0 0 chr9 22883770 22883837 -94978790 + (CA)n Simple_repeat Simple_repeat 2 68 0 1965 128 28 0 chr9 22883837 22884003 -94978624 + AluSx SINE Alu 118 297 -15 5403 215 37 38 chr9 22884134 22884720 -94977907 - L1 LINE L1 -1338 4808 4223 315 0 0 0 chr9 22884720 22884755 -94977872 + (TG)n Simple_repeat Simple_repeat 2 36 0 5403 215 37 38 chr9 22884755 22885923 -94976704 - L1 LINE L1 -1923 4223 3055 1471 86 14 265 chr9 22885925 22886411 -94976216 - THE1B LTR MaLR 0 364 1 401 276 126 6 chr9 22886415 22886589 -94976038 - L1 LINE L1 -3093 3053 2859 1908 141 41 0 chr9 22886863 22887154 -94975473 + AluSx SINE Alu 1 303 -9 183 225 169 42 chr9 22888102 22888173 -94974454 - L2 LINE L2 -9 3304 3225 2064 234 133 19 chr9 22888476 22889402 -94973225 + MER106B DNA MER1_type 3 1033 -26 180 77 0 0 chr9 22889425 22889451 -94973176 + (CA)n Simple_repeat Simple_repeat 1 26 0 25 75 0 0 chr9 22890428 22890481 -94972146 + AT_rich Low_complexity Low_complexity 1 53 0 180 302 16 0 chr9 22890961 22891024 -94971603 - L2 LINE L2 -982 2332 2269 3681 123 25 13 chr9 22891451 22892046 -94970581 - LTR43 LTR ERV1 0 602 1 27 62 0 0 chr9 22892185 22892233 -94970394 + AT_rich Low_complexity Low_complexity 1 48 0 5652 109 3 16 chr9 22892924 22894033 -94968594 - L1PA10 LINE L1 -4 6164 5031 4832 91 6 1 chr9 22894033 22894691 -94967936 - L1PA7 LINE L1 0 6154 5494 10867 108 16 104 chr9 22894691 22897012 -94965615 - L1PA10 LINE L1 -1107 5039 2923 6848 149 13 10 chr9 22897000 22898277 -94964350 + L1PA10 LINE L1 1668 2948 -3198 * 261 227 18 18 chr9 22899313 22899423 -94963204 + (TA)n Simple_repeat Simple_repeat 2 111 0 333 299 55 12 chr9 22899501 22899665 -94962962 - L1ME3A LINE L1 -5 6165 5995 746 294 48 4 chr9 22899724 22899955 -94962672 - MIR SINE MIR -21 241 1 254 399 28 21 chr9 22900608 22900751 -94961876 + MIR SINE MIR 19 162 -100 3061 147 11 0 chr9 22901919 22902462 -94960165 + L1PA12 LINE L1 2507 3055 -4526 185 228 70 0 chr9 22902653 22902710 -94959917 + L3b LINE CR1 1294 1354 -229 816 91 0 16 chr9 22903718 22903839 -94958788 - L1PA8 LINE L1 -4 6168 6050 3094 122 46 12 chr9 22903840 22904687 -94957940 - L1PA8 LINE L1 -351 5780 4907 180 340 162 15 chr9 22904713 22904972 -94957655 + L2 LINE L2 2027 2323 -991 207 146 0 0 chr9 22905473 22905514 -94957113 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 2730 205 70 24 chr9 22906555 22907448 -94955179 - MER106B DNA MER1_type -77 982 48 3208 32 0 0 chr9 22908687 22909096 -94953531 - L1PA8A LINE L1 -3248 2898 2490 * 18177 57 17 2 chr9 22909093 22911945 -94950682 + L1PA8A LINE L1 2885 5768 -363 953 64 0 0 chr9 22911958 22912083 -94950544 + L1PA8 LINE L1 6048 6172 0 7557 255 32 30 chr9 22913376 22916951 -94945676 - L1PA12 LINE L1 -4526 3055 6 6315 277 31 37 chr9 22917143 22920042 -94942585 - L1PA12 LINE L1 -5229 2352 6 660 243 21 0 chr9 22920752 22920987 -94941640 - L1M4 LINE L1 -3000 3146 2907 970 68 0 0 chr9 22920994 22921126 -94941501 - L1PA6 LINE L1 0 6154 6023 22 35 0 0 chr9 22921479 22921508 -94941119 + AT_rich Low_complexity Low_complexity 1 29 0 2748 217 68 23 chr9 22921658 22922578 -94940049 + MER106B DNA MER1_type 21 982 -77 34 0 0 0 chr9 22923629 22923663 -94938964 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr9 22923860 22923895 -94938732 + AT_rich Low_complexity Low_complexity 1 35 0 215 329 68 27 chr9 22923896 22924042 -94938585 - L2 LINE L2 -38 3275 3124 27 73 0 0 chr9 22924750 22924805 -94937822 + AT_rich Low_complexity Low_complexity 1 55 0 1096 82 0 0 chr9 22924922 22925080 -94937547 + L1P LINE L1 4880 5037 -1109 22 35 0 0 chr9 22925383 22925412 -94937215 + AT_rich Low_complexity Low_complexity 1 29 0 3116 198 69 34 chr9 22925557 22926562 -94936065 + MER106B DNA MER1_type 16 1055 -4 197 143 0 20 chr9 22927526 22927575 -94935052 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 3285 106 39 4 chr9 22928347 22929190 -94933437 + L1PA8A LINE L1 4907 5777 -354 284 311 68 19 chr9 22929780 22929941 -94932686 + MIR SINE MIR 82 250 -12 1961 184 67 12 chr9 22930725 22931128 -94931499 + MER83 LTR ERV1 1 425 -23 2502 136 85 19 chr9 22932350 22932925 -94929702 - MER4B LTR ERV1 0 779 1 1310 278 24 7 chr9 22934988 22935405 -94927222 - MER57B LTR ERV1 -1 433 10 776 256 62 50 chr9 22935416 22935756 -94926871 - MER57-int LTR ERV1 -400 7137 6794 1492 216 0 34 chr9 22936034 22936330 -94926297 + AluJo SINE Alu 1 286 -26 382 274 26 13 chr9 22937559 22937791 -94924836 - MER57-int LTR ERV1 -1486 6051 4982 2240 270 29 41 chr9 22937811 22938569 -94924058 + L1PA13 LINE L1 1 749 -6038 6380 234 57 17 chr9 22938587 22941328 -94921299 + L1PA13 LINE L1 1323 4251 -2546 1431 206 90 0 chr9 22941368 22941645 -94920982 - AluJo SINE Alu -10 302 1 182 309 53 21 chr9 22942616 22942710 -94919917 + MIR SINE MIR 166 262 0 1528 33 0 0 chr9 22943657 22943838 -94918789 - L1PA4 LINE L1 0 6155 5975 7433 35 0 1 chr9 22943838 22945053 -94917574 + L1PA3 LINE L1 4962 6175 0 935 91 0 0 chr9 22945247 22945379 -94917248 + L1PA6 LINE L1 6023 6154 0 1047 244 40 9 chr9 22945379 22945805 -94916822 + L1 LINE L1 2900 3338 -2808 2308 70 0 3 chr9 22945806 22946092 -94916535 + AluY SINE Alu 1 285 -26 1746 28 0 5 chr9 22946093 22946304 -94916323 + L1PA3 LINE L1 5946 6155 0 678 25 0 0 chr9 22946496 22946576 -94916051 + (TTTC)n Simple_repeat Simple_repeat 2 81 0 871 80 0 0 chr9 22946579 22946691 -94915936 - L1PA8 LINE L1 -13 6159 6048 3476 108 16 3 chr9 22946694 22947584 -94915043 - L1PA8 LINE L1 -354 5777 4880 34 55 0 0 chr9 22947702 22947757 -94914870 + AT_rich Low_complexity Low_complexity 1 55 0 181 358 111 45 chr9 22947868 22948134 -94914493 + L2 LINE L2 1758 2005 -1309 1038 39 0 0 chr9 22948134 22948261 -94914366 - L1PA3 LINE L1 -3 6152 6026 181 358 111 45 chr9 22948261 22948525 -94914102 + L2 LINE L2 2005 2323 -991 217 340 61 27 chr9 22948618 22948765 -94913862 + L2 LINE L2 3124 3275 -38 217 197 0 30 chr9 22948994 22949060 -94913567 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 2718 203 83 48 chr9 22950018 22951025 -94911602 - MER106B DNA MER1_type -1 1058 16 22 35 0 0 chr9 22951170 22951199 -94911428 + AT_rich Low_complexity Low_complexity 1 29 0 2361 120 11 0 chr9 22952633 22952992 -94909635 - MER57B LTR ERV1 -71 363 1 1229 237 34 3 chr9 22953419 22953744 -94908883 + L1MD3 LINE L1 7547 7881 -114 199 259 19 0 chr9 22954093 22954147 -94908480 + MIR SINE MIR 109 163 -99 1628 248 35 27 chr9 22954165 22954683 -94907944 - MLT2B3 LTR ERVL 0 520 3 2067 144 35 30 chr9 22955322 22955717 -94906910 - L1MB2 LINE L1 -2 6169 5773 2429 174 18 39 chr9 22955796 22956240 -94906387 - L1M3 LINE L1 -369 5814 5386 1781 186 28 6 chr9 22956240 22956595 -94906032 - MLT1A1 LTR MaLR 0 365 3 2429 174 18 39 chr9 22956595 22956849 -94905778 - L1M3 LINE L1 -797 5386 5128 905 166 0 0 chr9 22956948 22957111 -94905516 + L1M1 LINE L1 5497 5659 -645 1284 132 26 0 chr9 22957213 22957440 -94905187 + L1MA1 LINE L1 5610 5842 -460 338 102 0 194 chr9 22957656 22957705 -94904922 - MER50-int LTR ERV1 -1766 4497 4475 1881 155 3 39 chr9 22957705 22958014 -94904613 + AluSx SINE Alu 5 302 -10 338 102 0 194 chr9 22958014 22958062 -94904565 - MER50-int LTR ERV1 -1788 4475 4419 5028 166 46 32 chr9 22958065 22958429 -94904198 - MER50-int LTR ERV1 -2664 4541 4184 2634 94 16 8 chr9 22958429 22958801 -94903826 - THE1C LTR MaLR 0 375 1 5028 166 46 32 chr9 22958801 22959588 -94903039 - MER50-int LTR ERV1 -3021 4184 3374 1922 172 8 32 chr9 22959693 22960066 -94902561 - MER50-int LTR ERV1 -3514 1366 1003 6185 148 20 14 chr9 22960096 22961854 -94900773 - MER50-int LTR ERV1 -5356 1849 1 1342 153 18 0 chr9 22961888 22962111 -94900516 - MER50 LTR ERV1 -12 722 496 391 309 54 6 chr9 22963117 22963285 -94899342 + MIR SINE MIR 84 259 -3 282 56 0 0 chr9 22963598 22963634 -94898993 + (TA)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr9 22963711 22963735 -94898892 + AT_rich Low_complexity Low_complexity 1 24 0 279 309 64 67 chr9 22965820 22966118 -94896509 + L2 LINE L2 1996 2292 -1022 240 307 143 14 chr9 22966200 22966340 -94896287 + L2 LINE L2 3155 3312 -1 756 199 14 0 chr9 22966394 22966535 -94896092 + FRAM SINE Alu 1 143 -33 2169 90 0 4 chr9 22966625 22966903 -94895724 + AluSg SINE Alu 1 277 -33 217 0 61 0 chr9 22966903 22966936 -94895691 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 461 254 86 43 chr9 22967632 22967911 -94894716 + L1MC4a LINE L1 5716 6006 -1802 839 223 0 30 chr9 22970756 22970953 -94891674 + MER31B LTR ERV1 276 466 0 242 232 18 0 chr9 22971656 22971712 -94890915 + MIR SINE MIR 107 163 -99 2245 88 0 0 chr9 22973011 22973295 -94889332 - AluSc SINE Alu -25 284 1 2362 190 76 64 chr9 22973298 22974154 -94888473 + MER106B DNA MER1_type 151 1016 -43 288 127 14 28 chr9 22975164 22975235 -94887392 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 21 0 0 0 chr9 22975238 22975259 -94887368 + AT_rich Low_complexity Low_complexity 1 21 0 309 369 130 22 chr9 22975692 22976245 -94886382 - L2 LINE L2 -978 2336 1724 33 80 0 0 chr9 22976318 22976393 -94886234 + AT_rich Low_complexity Low_complexity 1 75 0 241 232 54 0 chr9 22976662 22976718 -94885909 + MIR SINE MIR 84 142 -66 334 231 105 42 chr9 22977139 22977282 -94885345 - L1M LINE L1 -752 5418 5267 1189 150 16 0 chr9 22977382 22977575 -94885052 - AluSg/x SINE Alu -11 301 106 1662 135 108 27 chr9 22977891 22978225 -94884402 + MER46B DNA MER2_type 1 236 0 24 53 0 0 chr9 22978519 22978557 -94884070 + AT_rich Low_complexity Low_complexity 1 38 0 773 169 0 0 chr9 22980012 22980136 -94882491 - FLAM_C SINE Alu -8 125 2 183 42 0 0 chr9 22980537 22980561 -94882066 + (TG)n Simple_repeat Simple_repeat 2 25 0 231 275 58 33 chr9 22981171 22981291 -94881336 + L1ME LINE L1 5521 5643 -478 27 49 0 0 chr9 22981890 22981931 -94880696 + AT_rich Low_complexity Low_complexity 1 41 0 2247 105 0 3 chr9 22983157 22983471 -94879156 - AluSq SINE Alu 0 313 1 1975 219 137 6 chr9 22983859 22984356 -94878271 + MLT1F1 LTR MaLR 1 562 -5 326 343 73 58 chr9 22985044 22985455 -94877172 + L2 LINE L2 2820 3236 -36 2034 138 10 0 chr9 22986044 22986342 -94876285 + AluSx SINE Alu 2 302 -10 1189 61 0 0 chr9 22987730 22987878 -94874749 + L1PA7 LINE L1 5994 6141 -13 678 25 0 0 chr9 22987881 22987961 -94874666 + (GAAA)n Simple_repeat Simple_repeat 2 81 0 8253 247 33 35 chr9 22989220 22992809 -94869818 - L1PA12 LINE L1 -4526 3055 6 370 258 19 123 chr9 22994273 22994533 -94868094 - MER8 DNA MER2_type 0 239 7 508 321 111 55 chr9 22994556 22995105 -94867522 - L2 LINE L2 -1019 2295 1716 934 160 73 14 chr9 22995186 22995405 -94867222 - L1MA9 LINE L1 -10 6302 6071 21 82 0 0 chr9 22995413 22995462 -94867165 + AT_rich Low_complexity Low_complexity 1 49 0 2074 194 27 82 chr9 22996348 22997017 -94865610 + L1MD3 LINE L1 7354 7985 -10 198 278 19 0 chr9 22997884 22997938 -94864689 + MIR SINE MIR 109 163 -99 185 296 56 14 chr9 22997940 22998011 -94864616 + L2 LINE L2 3223 3296 -17 2616 146 60 142 chr9 22998459 22999022 -94863605 - L1MB3 LINE L1 -32 6151 5543 2059 89 0 41 chr9 22999022 22999313 -94863314 + AluY SINE Alu 1 279 -32 216 0 0 0 chr9 22999316 22999340 -94863287 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2616 146 60 142 chr9 22999340 22999613 -94863014 - L1MB3 LINE L1 -642 5541 5380 824 211 0 7 chr9 22999616 22999768 -94862859 - MLT1A1 LTR MaLR -3 362 212 489 202 0 10 chr9 22999787 22999886 -94862741 - MLT1A1 LTR MaLR -274 100 3 8765 223 30 19 chr9 22999888 23001915 -94860712 - L1MB3 LINE L1 -762 5384 3323 2427 67 0 13 chr9 23001915 23002228 -94860399 - AluY SINE Alu -2 309 1 8765 223 30 19 chr9 23002228 23002650 -94859977 - L1MB3 LINE L1 -2823 3323 2907 927 91 0 0 chr9 23002657 23002789 -94859838 - L1PA6 LINE L1 0 6154 6023 3039 205 73 43 chr9 23004309 23005315 -94857312 + MER106B DNA MER1_type 21 1056 -3 203 179 0 0 chr9 23006279 23006318 -94856309 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 28 86 0 0 chr9 23006400 23006470 -94856157 + AT_rich Low_complexity Low_complexity 1 70 0 182 374 24 30 chr9 23006590 23006756 -94855871 - L2 LINE L2 -58 3255 3091 273 327 95 14 chr9 23007076 23007287 -94855340 - L2 LINE L2 -1364 1950 1723 434 88 25 0 chr9 23007911 23007991 -94854636 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1797 179 3 22 chr9 23008854 23009172 -94853455 - AluSx SINE Alu 0 312 1 6013 200 10 16 chr9 23009416 23010968 -94851659 - L1P5 LINE L1 -894 5252 3803 3531 86 6 0 chr9 23010966 23011469 -94851158 + L1P5 LINE L1 5270 5775 -376 * 342 98 0 0 chr9 23011470 23011521 -94851106 + (TA)n Simple_repeat Simple_repeat 2 52 0 234 0 0 59 chr9 23011523 23011557 -94851070 - MLT2B3 LTR ERVL -522 32 1 1943 177 25 54 chr9 23011559 23011784 -94850843 + L1MCb LINE L1 667 874 -5171 779 69 0 0 chr9 23011784 23011885 -94850742 + HY3 scRNA scRNA 1 101 0 1943 177 25 54 chr9 23011885 23012105 -94850522 + L1MCb LINE L1 874 1099 -4946 23 0 0 0 chr9 23012189 23012212 -94850415 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr9 23012240 23012292 -94850335 + AT_rich Low_complexity Low_complexity 1 52 0 263 330 142 19 chr9 23012883 23013192 -94849435 - L2 LINE L2 -1143 2171 1825 180 0 0 0 chr9 23013262 23013282 -94849345 + (CAA)n Simple_repeat Simple_repeat 2 21 0 974 241 43 73 chr9 23013284 23013409 -94849218 - L1MEd LINE L1 -2944 3185 3058 2321 99 0 6 chr9 23013409 23013722 -94848905 - AluSx SINE Alu 0 312 2 974 241 43 73 chr9 23013722 23013983 -94848644 - L1MEd LINE L1 -3071 3058 2815 2091 106 55 0 chr9 23013983 23014276 -94848351 - AluSx SINE Alu -1 311 3 974 241 43 73 chr9 23014276 23014394 -94848233 - L1MEd LINE L1 -3314 2815 2695 418 242 57 78 chr9 23014455 23014893 -94847734 - L1MEd LINE L1 -3948 2362 1934 24 0 0 0 chr9 23014947 23014971 -94847656 + AT_rich Low_complexity Low_complexity 1 24 0 914 269 48 62 chr9 23014981 23015552 -94847075 - L1MEd LINE L1 -4618 1692 1092 183 42 0 0 chr9 23015737 23015761 -94846866 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1664 178 3 22 chr9 23016195 23016509 -94846118 + AluJb SINE Alu 1 308 -4 407 306 113 5 chr9 23016883 23017069 -94845558 + MIR SINE MIR 54 259 -3 213 244 24 0 chr9 23017300 23017382 -94845245 + (TTATA)n Simple_repeat Simple_repeat 1 84 0 191 141 59 24 chr9 23017385 23017470 -94845157 + (TA)n Simple_repeat Simple_repeat 1 88 0 267 31 0 0 chr9 23017492 23017524 -94845103 + (CA)n Simple_repeat Simple_repeat 1 32 0 1430 278 24 7 chr9 23019096 23019513 -94843114 - MER57B LTR ERV1 -1 433 10 879 256 62 50 chr9 23019524 23019864 -94842763 - MER57-int LTR ERV1 -400 7137 6794 1453 216 0 34 chr9 23020142 23020438 -94842189 + AluJo SINE Alu 1 286 -26 415 274 26 13 chr9 23021667 23021899 -94840728 - MER57-int LTR ERV1 -1486 6051 4982 6947 241 72 20 chr9 23021919 23025436 -94837191 + L1PA13 LINE L1 1 4251 -2546 1393 206 90 0 chr9 23025476 23025753 -94836874 - AluJo SINE Alu -10 302 1 186 309 53 21 chr9 23026724 23026818 -94835809 + MIR SINE MIR 166 262 0 1522 33 0 0 chr9 23027765 23027946 -94834681 - L1PA4 LINE L1 0 6155 5975 4548 22 0 0 chr9 23027946 23028774 -94833853 + L1P2 LINE L1 4962 5789 -366 1454 194 0 27 chr9 23029633 23029926 -94832701 + AluJo SINE Alu 13 297 -15 311 131 24 24 chr9 23030106 23030190 -94832437 + (TA)n Simple_repeat Simple_repeat 2 85 0 22 56 0 0 chr9 23031448 23031484 -94831143 + AT_rich Low_complexity Low_complexity 1 36 0 537 74 0 0 chr9 23031664 23031745 -94830882 + L1MA3 LINE L1 6225 6305 0 742 344 113 25 chr9 23031950 23032514 -94830113 - L2 LINE L2 -978 2336 1723 2061 96 17 24 chr9 23032581 23032873 -94829754 + AluSc SINE Alu 4 293 -16 753 161 40 0 chr9 23033449 23033598 -94829029 - L1MA6 LINE L1 -4 6296 6142 1605 184 7 7 chr9 23033602 23033901 -94828726 + AluJo SINE Alu 4 302 -10 29 28 0 0 chr9 23034020 23034056 -94828571 + AT_rich Low_complexity Low_complexity 1 36 0 764 263 130 24 chr9 23034201 23034539 -94828088 + MER87 LTR ERV1 168 541 0 4034 216 42 16 chr9 23034696 23035726 -94826901 - L1MC3 LINE L1 -1322 6463 5407 463 57 129 0 chr9 23039572 23039642 -94822985 + MADE1 DNA Mariner 1 79 -1 187 293 27 0 chr9 23041319 23041394 -94821233 - L2 LINE L2 -264 3008 2932 296 289 26 19 chr9 23041430 23041454 -94821173 - L1MA10 LINE L1 -10 6324 6301 2548 248 68 26 chr9 23041454 23041680 -94820947 - L1ME1 LINE L1 -23 6143 5928 1394 196 85 26 chr9 23041680 23042032 -94820595 + MLT1A2 LTR MaLR 2 374 0 2548 248 68 26 chr9 23042032 23043000 -94819627 - L1ME1 LINE L1 -238 5928 4861 8010 79 37 0 chr9 23043000 23044919 -94817708 - L1PA7 LINE L1 0 6154 4206 2548 248 68 26 chr9 23044919 23045415 -94817212 - L1ME1 LINE L1 -1305 4861 4387 3658 144 20 21 chr9 23045415 23046114 -94816513 + L1MA8 LINE L1 5594 6291 0 3463 194 31 14 chr9 23047363 23047640 -94814987 + L1 LINE L1 3883 4154 -1992 1376 42 0 5 chr9 23047640 23047854 -94814773 + (GAA)n Simple_repeat Simple_repeat 1 213 0 3463 194 31 14 chr9 23047854 23048370 -94814257 + L1 LINE L1 4154 4691 -1455 662 215 55 149 chr9 23048374 23048843 -94813784 + L1ME3A LINE L1 5743 6167 -3 1397 213 68 18 chr9 23049097 23049496 -94813131 + Charlie1 DNA MER1_type 2343 2761 0 227 214 71 71 chr9 23051100 23051184 -94811443 + LTR48B LTR ERV1 1 84 -560 * 1763 217 24 22 chr9 23051175 23051620 -94811007 + MER39 LTR ERV1 260 561 -4 3034 156 76 18 chr9 23051739 23052356 -94810271 + MER39B LTR ERV1 1 653 0 514 269 28 7 chr9 23053297 23053442 -94809185 - MIR SINE MIR -6 256 109 6174 203 14 8 chr9 23053494 23055820 -94806807 + L1PBa LINE L1 1855 4316 -2546 35 78 0 0 chr9 23055967 23056044 -94806583 + AT_rich Low_complexity Low_complexity 1 77 0 2732 219 132 27 chr9 23056338 23057479 -94805148 - L1M4c LINE L1 -2671 3973 2714 273 119 0 0 chr9 23057894 23057936 -94804691 + (TG)n Simple_repeat Simple_repeat 1 42 0 5623 238 66 25 chr9 23058169 23060479 -94802148 - L1M4c LINE L1 -4097 2549 16 315 302 9 9 chr9 23061449 23061555 -94801072 + MARNA DNA Mariner 174 279 -307 29 70 0 0 chr9 23061921 23061978 -94800649 + AT_rich Low_complexity Low_complexity 1 57 0 26 30 0 0 chr9 23062578 23062611 -94800016 + AT_rich Low_complexity Low_complexity 1 33 0 313 328 60 48 chr9 23062961 23063211 -94799416 - MIR SINE MIR 0 262 10 3564 236 28 21 chr9 23063313 23064284 -94798343 - Charlie1a DNA MER1_type -472 983 6 227 352 28 101 chr9 23064397 23064832 -94797795 + L2 LINE L2 2813 3215 -57 2400 46 6 56 chr9 23066144 23066467 -94796160 - AluY SINE Alu -4 307 1 2645 146 46 70 chr9 23067737 23067919 -94794708 - L1 LINE L1 -1658 4488 4303 5169 118 29 1 chr9 23067919 23068740 -94793887 - L1MA2 LINE L1 0 6304 5461 2645 146 46 70 chr9 23068740 23068957 -94793670 - L1 LINE L1 -1843 4303 4107 1935 153 0 3 chr9 23068957 23069251 -94793376 + AluSx SINE Alu 1 293 -19 2645 146 46 70 chr9 23069251 23069480 -94793147 - L1 LINE L1 -2039 4107 3874 183 257 69 40 chr9 23069529 23069630 -94792997 - MIR SINE MIR -151 111 8 767 220 0 0 chr9 23069896 23070046 -94792581 + MSTD LTR MaLR 236 385 -11 1464 214 12 3 chr9 23070053 23070399 -94792228 + L1MB2 LINE L1 4339 4687 -1459 704 154 0 0 chr9 23070402 23070506 -94792121 - AluSg/x SINE Alu -10 300 197 3260 190 86 17 chr9 23070507 23071895 -94790732 + L1MB2 LINE L1 4686 6168 -3 1496 216 0 3 chr9 23071902 23072185 -94790442 + AluJo SINE Alu 7 288 -24 582 282 57 43 chr9 23072255 23072464 -94790163 + MIR SINE MIR 16 227 -35 23 0 0 0 chr9 23072787 23072810 -94789817 + AT_rich Low_complexity Low_complexity 1 23 0 363 299 125 27 chr9 23073097 23073321 -94789306 + L1MC/D LINE L1 4569 4814 -1332 480 223 19 0 chr9 23073516 23073619 -94789008 + L1MC/D LINE L1 5446 5550 -783 182 219 109 47 chr9 23074492 23074556 -94788071 - L2 LINE L2 -4 3268 3201 560 220 30 8 chr9 23075009 23075141 -94787486 + MIR SINE MIR 107 241 -21 197 254 175 0 chr9 23075873 23075936 -94786691 + MIR SINE MIR 155 228 -34 3294 145 59 16 chr9 23076058 23076684 -94785943 - MER39B LTR ERV1 0 653 1 1759 233 18 14 chr9 23076804 23077242 -94785385 - MER39 LTR ERV1 -6 701 262 410 230 52 22 chr9 23078042 23078177 -94784450 - Charlie1 DNA MER1_type 0 2761 2623 38 89 0 0 chr9 23078433 23078534 -94784093 + AT_rich Low_complexity Low_complexity 1 101 0 6295 157 87 36 chr9 23078814 23079726 -94782901 + L1ME3A LINE L1 32 896 -5530 2127 117 3 7 chr9 23079726 23080035 -94782592 + AluSc SINE Alu 1 308 -1 6295 157 87 36 chr9 23080035 23080091 -94782536 + L1ME3A LINE L1 896 948 -5478 4003 171 74 12 chr9 23080091 23080836 -94781791 - MER54B LTR ERVL 0 793 3 6295 157 87 36 chr9 23080836 23081576 -94781051 + L1ME3A LINE L1 948 2000 -4426 1272 157 4 38 chr9 23081553 23081790 -94780837 + L1ME3A LINE L1 2238 2413 -4013 * 2244 94 3 3 chr9 23081790 23082087 -94780540 + AluY SINE Alu 1 297 -14 1272 157 4 38 chr9 23082087 23082152 -94780475 + L1ME3A LINE L1 2413 2479 -3947 414 106 59 0 chr9 23082432 23082627 -94780000 + (TA)n Simple_repeat Simple_repeat 1 206 0 5043 127 22 4 chr9 23082721 23083492 -94779135 - Tigger2 DNA MER2_type -1 2717 1933 12273 93 20 2 chr9 23083502 23085181 -94777446 - L1P3 LINE L1 -4734 1727 20 698 239 25 5 chr9 23085184 23085381 -94777246 - L1M2 LINE L1 -4177 2672 2472 * 3758 231 16 14 chr9 23085379 23086460 -94776167 + L1ME3A LINE L1 3189 4271 -2155 385 72 0 58 chr9 23086467 23086536 -94776091 + L1MC1 LINE L1 6269 6333 0 22 0 0 0 chr9 23086655 23086677 -94775950 + AT_rich Low_complexity Low_complexity 1 22 0 1594 165 57 6 chr9 23086748 23087064 -94775563 - L1MC3 LINE L1 -172 7613 7282 1230 252 101 83 chr9 23087196 23088280 -94774347 - L1M4 LINE L1 -840 5306 4204 1944 244 95 52 chr9 23088302 23088955 -94773672 + L1ME3A LINE L1 5607 6302 -148 1539 222 28 19 chr9 23088955 23089315 -94773312 + MLT1A1 LTR MaLR 1 363 -2 1944 244 95 52 chr9 23089315 23089461 -94773166 + L1ME3A LINE L1 6302 6440 -10 1145 209 77 7 chr9 23090759 23091056 -94771571 + MER33 DNA MER1_type 7 324 0 484 244 188 6 chr9 23091310 23091470 -94771157 + MIR SINE MIR 74 262 0 371 256 50 33 chr9 23092004 23092184 -94770443 - L1ME4a LINE L1 -11 6110 5928 27 62 0 0 chr9 23092269 23092317 -94770310 + AT_rich Low_complexity Low_complexity 1 48 0 276 264 115 44 chr9 23092586 23092815 -94769812 - L1MC4a LINE L1 -332 5822 5679 338 154 0 77 chr9 23092947 23093012 -94769615 - MLT1G LTR MaLR -299 291 232 1085 216 96 75 chr9 23093537 23093870 -94768757 + MER2 DNA MER2_type 6 345 0 39 60 0 0 chr9 23094937 23095004 -94767623 + AT_rich Low_complexity Low_complexity 1 67 0 483 271 17 18 chr9 23096046 23096222 -94766405 - MIR SINE MIR -14 248 76 680 183 0 122 chr9 23097826 23098072 -94764555 + L1ME4a LINE L1 5172 5387 -759 2612 242 63 45 chr9 23098801 23099475 -94763152 + L1ME1 LINE L1 5171 5870 -296 1971 137 10 0 chr9 23099475 23099775 -94762852 + AluSx SINE Alu 1 303 -9 2612 242 63 45 chr9 23099775 23100074 -94762553 + L1ME1 LINE L1 5870 6162 -4 2825 172 27 22 chr9 23100480 23101078 -94761549 - L1MB3 LINE L1 -2 6181 5581 572 246 68 35 chr9 23101144 23101204 -94761423 - MIR SINE MIR 0 262 205 198 0 0 0 chr9 23101204 23101226 -94761401 + (CTAG)n Simple_repeat Simple_repeat 1 22 0 554 82 12 0 chr9 23101227 23101312 -94761315 + (TAGA)n Simple_repeat Simple_repeat 3 88 0 572 246 68 35 chr9 23101312 23101479 -94761148 - MIR SINE MIR -56 206 32 252 0 0 0 chr9 23102160 23102188 -94760439 + (T)n Simple_repeat Simple_repeat 1 28 0 203 200 0 0 chr9 23102254 23102294 -94760333 + MIR SINE MIR 63 102 -160 1930 164 23 33 chr9 23102393 23102784 -94759843 + L1MA8 LINE L1 5902 6288 -3 264 257 14 0 chr9 23105230 23105300 -94757327 - MLT1K LTR MaLR -8 580 510 337 322 49 53 chr9 23106618 23106882 -94755745 - MLT1J LTR MaLR -4 507 245 24 53 0 0 chr9 23107431 23107469 -94755158 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr9 23107863 23107893 -94754734 + AT_rich Low_complexity Low_complexity 1 30 0 377 173 27 0 chr9 23107954 23108029 -94754598 + L1ME4a LINE L1 5591 5667 -454 201 39 0 0 chr9 23108045 23108071 -94754556 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 6662 30 4 0 chr9 23108085 23108877 -94753750 - L1PA4 LINE L1 0 6155 5361 23 78 0 0 chr9 23108982 23109033 -94753594 + AT_rich Low_complexity Low_complexity 1 51 0 356 294 149 23 chr9 23109075 23109296 -94753331 + L1ME4a LINE L1 5864 6112 -9 199 360 105 12 chr9 23109569 23109655 -94752972 + MIR SINE MIR 16 109 -99 576 277 59 31 chr9 23109815 23110048 -94752579 + MIR SINE MIR 21 262 0 180 111 0 0 chr9 23111151 23111178 -94751449 + (A)n Simple_repeat Simple_repeat 1 27 0 331 230 90 10 chr9 23111416 23111516 -94751111 - MER117 DNA MER1_type -49 148 41 186 222 0 0 chr9 23111597 23111633 -94750994 + MIR SINE MIR 111 146 -62 21 0 0 0 chr9 23111668 23111689 -94750938 + AT_rich Low_complexity Low_complexity 1 21 0 233 303 273 0 chr9 23112170 23112302 -94750325 - MIR SINE MIR -1 261 94 31 110 0 0 chr9 23113499 23113635 -94748992 + AT_rich Low_complexity Low_complexity 1 136 0 3618 88 8 6 chr9 23113645 23114142 -94748485 - L1PA11 LINE L1 -11 6163 5666 2156 115 0 3 chr9 23114274 23114586 -94748041 - AluSq SINE Alu 0 312 2 2060 166 11 11 chr9 23114859 23115208 -94747419 - MLT1A1 LTR MaLR 0 365 17 961 180 46 0 chr9 23115958 23116152 -94746475 + MER3 DNA MER1_type 1 203 -6 447 245 128 37 chr9 23116307 23116495 -94746132 + L2 LINE L2 3042 3246 -67 2305 149 49 77 chr9 23116516 23116622 -94746005 - LTR32 LTR ERVL 0 471 364 318 87 0 0 chr9 23116622 23116668 -94745959 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2305 149 49 77 chr9 23116668 23117031 -94745596 - LTR32 LTR ERVL -107 364 15 195 255 0 21 chr9 23117464 23117511 -94745116 + MER5B DNA MER1_type 91 136 -42 1602 169 178 11 chr9 23117833 23118199 -94744428 - MSTA LTR MaLR 0 428 2 342 231 32 128 chr9 23118200 23118325 -94744302 - MER5A DNA MER1_type -2 187 78 2139 113 3 25 chr9 23118325 23118644 -94743983 - AluSx SINE Alu 0 312 1 342 231 32 128 chr9 23118644 23118674 -94743953 - MER5A DNA MER1_type -111 78 47 733 98 62 0 chr9 23118674 23118786 -94743841 + MER57B LTR ERV1 1 119 -315 203 303 253 10 chr9 23118832 23118931 -94743696 + MER5B DNA MER1_type 13 135 -43 2114 115 10 0 chr9 23118972 23119284 -94743343 + MER57B LTR ERV1 120 434 0 422 284 148 39 chr9 23119335 23119490 -94743137 - MER5A DNA MER1_type -13 176 5 1548 240 59 10 chr9 23119571 23119979 -94742648 + MLT1C LTR MaLR 1 428 -39 9004 99 21 1 chr9 23120717 23121978 -94740649 + HSMAR1 DNA Mariner 1 1287 0 247 260 136 63 chr9 23122033 23122244 -94740383 + MIR SINE MIR 8 221 -24 23 54 0 0 chr9 23122559 23122596 -94740031 + AT_rich Low_complexity Low_complexity 1 37 0 378 0 0 0 chr9 23122626 23122668 -94739959 + (CA)n Simple_repeat Simple_repeat 1 42 0 400 92 77 0 chr9 23122668 23122733 -94739894 + MLT2B3 LTR ERVL 2 71 -483 2207 209 27 8 chr9 23122837 23123310 -94739317 + MLT2B3 LTR ERVL 75 513 -7 792 264 34 10 chr9 23124930 23125138 -94737489 + MIR SINE MIR 46 258 -4 336 320 138 29 chr9 23126439 23126714 -94735913 + L1ME2 LINE L1 131 435 -5961 1152 266 96 40 chr9 23127044 23127177 -94735450 + L1ME2 LINE L1 1738 1862 -4534 2409 32 0 7 chr9 23127177 23127458 -94735169 + AluY SINE Alu 1 279 -32 189 0 0 0 chr9 23127458 23127479 -94735148 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1152 266 96 40 chr9 23127479 23128039 -94734588 + L1ME2 LINE L1 1861 2471 -3925 1435 229 145 30 chr9 23128047 23128571 -94734056 + L1ME2 LINE L1 3814 4397 -1818 3211 215 66 24 chr9 23128575 23129663 -94732964 + L1ME2 LINE L1 5108 6232 -1 256 259 25 114 chr9 23129918 23130057 -94732570 - L1MC/D LINE L1 -2311 5497 5380 2246 114 0 0 chr9 23130057 23130347 -94732280 + AluSx SINE Alu 1 290 -22 256 259 25 114 chr9 23130347 23130408 -94732219 - L1MC/D LINE L1 -2428 5380 5315 226 263 129 21 chr9 23130484 23130670 -94731957 - L1MC/D LINE L1 -1101 5045 4840 1278 72 0 0 chr9 23130911 23131064 -94731563 - AluY SINE Alu -158 153 1 237 264 94 53 chr9 23131093 23131358 -94731269 - L1MC/D LINE L1 -1541 4605 4330 23 0 0 0 chr9 23131367 23131390 -94731237 + AT_rich Low_complexity Low_complexity 1 23 0 298 292 91 32 chr9 23132597 23132751 -94729876 - MIR SINE MIR -66 196 34 24 0 0 0 chr9 23132809 23132833 -94729794 + AT_rich Low_complexity Low_complexity 1 24 0 495 198 0 0 chr9 23133429 23133520 -94729107 - AluJ/FLAM SINE Alu -221 91 1 868 139 0 29 chr9 23133634 23133771 -94728856 + FLAM_A SINE Alu 1 133 0 920 160 57 61 chr9 23134260 23134472 -94728155 - MER2 DNA MER2_type -134 211 1 397 234 186 28 chr9 23134961 23135106 -94727521 + MER96 DNA MER1_type? 2 169 -6 1440 233 70 29 chr9 23135810 23136735 -94725892 - L1ME1 LINE L1 -7 6159 5042 296 138 86 0 chr9 23137095 23137153 -94725474 - L2 LINE L2 0 3313 3251 299 265 0 61 chr9 23139327 23139425 -94723202 + MIR SINE MIR 54 145 -117 2151 119 0 0 chr9 23139791 23140093 -94722534 - AluJb SINE Alu -9 303 2 27 29 0 0 chr9 23140639 23140673 -94721954 + GC_rich Low_complexity Low_complexity 1 34 0 278 291 27 0 chr9 23140683 23140793 -94721834 - MIR SINE MIR -21 241 129 202 318 0 15 chr9 23140988 23141054 -94721573 + MER5A DNA MER1_type 111 175 -14 1728 131 29 35 chr9 23141651 23141963 -94720664 - AluSx SINE Alu -2 310 1 2397 161 0 43 chr9 23142109 23142526 -94720101 + MER47B DNA MER2_type 20 418 0 2321 109 0 0 chr9 23143958 23144269 -94718358 - AluSq SINE Alu -2 311 1 196 297 27 40 chr9 23144539 23144613 -94718014 + MIR SINE MIR 111 183 -79 319 353 25 17 chr9 23146109 23146228 -94716399 + MIR SINE MIR 25 144 -64 244 300 14 0 chr9 23146679 23146749 -94715878 + L2 LINE L2 3202 3272 0 2369 73 0 10 chr9 23148247 23148547 -94714080 + AluSc SINE Alu 1 297 -12 12997 45 7 0 chr9 23148738 23151133 -94711494 - L1PA5 LINE L1 -1 6153 3750 510 234 113 101 chr9 23152609 23152866 -94709761 - MIR SINE MIR 0 262 3 435 219 171 8 chr9 23152866 23152987 -94709640 + L2 LINE L2 3173 3313 0 374 233 142 25 chr9 23153809 23153929 -94708698 + MIR SINE MIR 129 262 0 214 182 45 0 chr9 23154356 23154400 -94708227 - MIR3 SINE MIR -6 202 157 296 360 20 30 chr9 23155419 23155619 -94707008 + L2 LINE L2 2829 3026 -246 282 254 91 18 chr9 23155899 23156009 -94706618 - L1ME4a LINE L1 -30 6091 5974 310 197 14 197 chr9 23157298 23157387 -94705240 + MIR SINE MIR 34 89 -173 2801 160 46 0 chr9 23157387 23157913 -94704714 - L1MB7 LINE L1 -7 6177 5628 310 197 14 197 chr9 23157913 23157965 -94704662 + MIR SINE MIR 89 149 -113 3236 194 135 22 chr9 23158010 23159027 -94703600 + L1 LINE L1 3975 5154 -992 2135 117 0 13 chr9 23159033 23159341 -94703286 - AluSx SINE Alu -8 304 1 329 244 126 8 chr9 23159343 23159470 -94703157 + L1ME4a LINE L1 5363 5504 -2304 998 181 33 0 chr9 23159686 23159868 -94702759 + MER5A DNA MER1_type 2 189 0 262 333 108 17 chr9 23160715 23160835 -94701792 + MIR SINE MIR 16 146 -62 215 266 144 40 chr9 23160974 23161049 -94701578 + L2 LINE L2 3028 3094 -219 3358 147 21 2 chr9 23161049 23161566 -94701061 + MER1A DNA MER1_type 1 527 0 215 266 144 40 chr9 23161566 23161663 -94700964 + L2 LINE L2 3094 3218 -95 1430 119 103 0 chr9 23162312 23162573 -94700054 + L1MA7 LINE L1 5998 6285 -6 238 238 114 9 chr9 23162796 23162901 -94699726 + L1ME4a LINE L1 5954 6069 -52 25 31 0 0 chr9 23162963 23162995 -94699632 + AT_rich Low_complexity Low_complexity 1 32 0 500 170 54 0 chr9 23163202 23163314 -94699313 - L1MD3 LINE L1 0 7995 7878 451 163 70 12 chr9 23165628 23165714 -94696913 - MLT1A2 LTR MaLR 0 374 284 272 209 46 13 chr9 23166166 23166467 -94696160 + (TA)n Simple_repeat Simple_repeat 1 291 -326 1581 183 21 3 chr9 23166467 23166757 -94695870 - AluJo SINE Alu -17 295 1 272 209 46 13 chr9 23166757 23166764 -94695863 + (TA)n Simple_repeat Simple_repeat 291 617 0 212 286 24 24 chr9 23166768 23166936 -94695691 + (TATATG)n Simple_repeat Simple_repeat 5 172 0 * 296 266 47 0 chr9 23166897 23167066 -94695561 + (TA)n Simple_repeat Simple_repeat 2 178 0 184 329 110 12 chr9 23167317 23167399 -94695228 - L2 LINE L2 -1889 1425 1336 207 0 0 0 chr9 23167419 23167442 -94695185 + (T)n Simple_repeat Simple_repeat 1 23 0 517 31 0 0 chr9 23167643 23167707 -94694920 + L1PA4 LINE L1 6089 6152 -3 24 0 0 0 chr9 23167707 23167731 -94694896 + AT_rich Low_complexity Low_complexity 1 24 0 6111 150 37 10 chr9 23171192 23173255 -94689372 - L1MA5A LINE L1 -5 6292 4166 347 368 0 0 chr9 23173250 23173356 -94689271 + L1M2c LINE L1 1072 1177 -5612 * 191 289 0 0 chr9 23173356 23173408 -94689219 + MIR SINE MIR 193 244 -18 1407 137 31 8 chr9 23173696 23173951 -94688676 + L1MA4A LINE L1 6043 6303 0 6760 112 30 17 chr9 23174321 23175378 -94687249 - MER11C LTR ERVK 0 1071 1 2107 88 56 0 chr9 23175810 23176095 -94686532 + AluY SINE Alu 4 304 -7 2152 129 0 0 chr9 23177707 23178035 -94684592 - AluSc SINE Alu 0 309 1 5504 160 30 59 chr9 23179200 23180491 -94682136 - L1MA5A LINE L1 0 6297 4971 2195 85 7 0 chr9 23180491 23180794 -94681833 + AluY SINE Alu 1 305 0 5504 160 30 59 chr9 23180794 23180968 -94681659 - L1MA5A LINE L1 -1326 4971 4794 7630 24 2 0 chr9 23180968 23182015 -94680612 + L1PA3 LINE L1 5107 6155 0 5504 160 30 59 chr9 23182015 23182730 -94679897 - L1MA5A LINE L1 -1503 4794 4185 477 254 11 2 chr9 23182721 23182849 -94679778 + L1M2c LINE L1 813 1256 -5533 * 192 286 0 0 chr9 23182849 23182905 -94679722 + MIR SINE MIR 193 248 -14 1281 148 25 12 chr9 23183193 23183436 -94679191 + L1MA4A LINE L1 6052 6297 -6 249 309 36 22 chr9 23184994 23185133 -94677494 - L2 LINE L2 -978 2336 2196 1109 174 20 48 chr9 23185667 23185889 -94676738 + L1MC/D LINE L1 5044 5271 -964 3242 106 27 2 chr9 23185889 23186400 -94676227 + L1MA3 LINE L1 5782 6305 0 225 0 0 0 chr9 23186403 23186428 -94676199 + (CA)n Simple_repeat Simple_repeat 2 26 0 195 42 0 0 chr9 23186427 23186451 -94676176 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 1109 174 20 48 chr9 23186428 23186673 -94675954 + L1MC/D LINE L1 5273 5492 -743 3121 200 78 42 chr9 23187454 23188248 -94674379 + MER106B DNA MER1_type 21 860 -199 2208 129 0 0 chr9 23188248 23188558 -94674069 - AluSg SINE Alu 0 310 1 3121 200 78 42 chr9 23188558 23188762 -94673865 + MER106B DNA MER1_type 860 1055 -4 197 143 0 20 chr9 23189733 23189782 -94672845 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 446 167 0 0 chr9 23190866 23190938 -94671689 - MSTB LTR MaLR -137 289 218 1553 174 39 0 chr9 23190954 23191235 -94671392 + MSTA LTR MaLR 137 428 0 2075 194 2 12 chr9 23191236 23191659 -94670968 + L1PB3 LINE L1 3420 3838 -2308 * 5363 155 33 1 chr9 23191652 23193359 -94669268 + L1PB3 LINE L1 4407 6303 0 490 271 29 59 chr9 23193672 23193842 -94668785 + MER5A DNA MER1_type 4 168 -21 219 348 142 21 chr9 23193865 23194006 -94668621 + MER5A DNA MER1_type 27 184 -5 358 190 46 155 chr9 23194500 23194674 -94667953 + MIR SINE MIR 53 208 0 405 296 193 11 chr9 23195475 23195651 -94666976 + MIR SINE MIR 1 208 -54 359 317 32 0 chr9 23195663 23195786 -94666841 - L2 LINE L2 0 3313 3187 23 54 0 0 chr9 23195868 23195905 -94666722 + AT_rich Low_complexity Low_complexity 1 37 0 873 256 14 23 chr9 23196090 23196309 -94666318 + MIR SINE MIR 2 218 -44 382 207 0 35 chr9 23196260 23196347 -94666280 - MIR SINE MIR -44 218 135 * 2830 54 13 3 chr9 23196387 23196759 -94665868 + L1PA5 LINE L1 5775 6150 -4 412 142 65 7 chr9 23196850 23197005 -94665622 + (TA)n Simple_repeat Simple_repeat 2 165 0 952 204 44 40 chr9 23197029 23197279 -94665348 - MER63C DNA MER1_type -420 510 260 200 273 0 0 chr9 23197712 23197756 -94664871 - MIR3 SINE MIR -14 194 151 325 231 58 10 chr9 23198591 23198695 -94663932 + MER103 DNA DNA 58 166 0 776 344 122 34 chr9 23199106 23199470 -94663157 - L2 LINE L2 -6 3266 2936 1693 142 25 14 chr9 23199470 23199745 -94662882 + AluSx SINE Alu 21 298 -14 776 344 122 34 chr9 23199745 23200122 -94662505 - L2 LINE L2 -336 2936 2458 22 35 0 0 chr9 23200444 23200473 -94662154 + AT_rich Low_complexity Low_complexity 1 29 0 2073 122 0 7 chr9 23200767 23201062 -94661565 + AluSx SINE Alu 1 293 -19 1239 123 20 5 chr9 23201106 23201309 -94661318 - AluSg/x SINE Alu -2 310 105 5903 70 5 5 chr9 23201309 23202076 -94660551 + LTR17 LTR ERV1 1 767 -13 452 145 0 24 chr9 23202220 23202303 -94660324 + AluYb8 SINE Alu 54 134 -184 1967 81 96 0 chr9 23202303 23202574 -94660053 + AluY SINE Alu 1 297 -14 265 298 0 10 chr9 23203777 23203881 -94658746 + L1MCc LINE L1 1366 1468 -4955 501 287 112 56 chr9 23203896 23204684 -94657943 + L1MCc LINE L1 1665 2496 -4445 208 225 0 0 chr9 23205283 23205323 -94657304 + (TGGA)n Simple_repeat Simple_repeat 4 43 0 189 0 0 0 chr9 23205876 23205897 -94656730 + (TA)n Simple_repeat Simple_repeat 1 21 0 6108 28 0 0 chr9 23205898 23206609 -94656018 - L1PA5 LINE L1 -11 6143 5433 383 294 11 71 chr9 23206907 23207091 -94655536 + MLT1J LTR MaLR 25 197 -314 420 228 54 0 chr9 23208076 23208168 -94654459 + MER5A DNA MER1_type 9 105 -84 672 246 130 5 chr9 23209732 23209939 -94652688 + MER5C DNA MER1_type 14 246 -78 3481 127 30 24 chr9 23209945 23209986 -94652641 - LTR49 LTR ERV1 0 595 556 2253 117 15 6 chr9 23209986 23210319 -94652308 - MER1B DNA MER1_type -1 336 1 3481 127 30 24 chr9 23210319 23210868 -94651759 - LTR49 LTR ERV1 -39 556 1 231 132 26 0 chr9 23210896 23210934 -94651693 + MER5C DNA MER1_type 286 324 0 28 0 0 0 chr9 23211652 23211680 -94650947 + AT_rich Low_complexity Low_complexity 1 28 0 1732 183 3 3 chr9 23212315 23212616 -94650011 - AluJb SINE Alu -11 301 1 24 53 0 0 chr9 23212846 23212884 -94649743 + AT_rich Low_complexity Low_complexity 1 38 0 1040 222 31 111 chr9 23212947 23213335 -94649292 - LTR16A1 LTR ERVL 0 457 101 517 279 95 0 chr9 23214144 23214291 -94648336 - MER97c DNA MER1_type? -908 182 22 735 277 84 14 chr9 23214314 23214685 -94647942 - ERVL LTR ERVL -1148 4616 4184 942 278 49 35 chr9 23216516 23217159 -94645468 - L2 LINE L2 -4 3309 2431 290 252 7 116 chr9 23217988 23218135 -94644492 + MIR SINE MIR 83 213 -49 21 0 0 0 chr9 23218254 23218275 -94644352 + AT_rich Low_complexity Low_complexity 1 21 0 792 229 27 6 chr9 23218792 23218975 -94643652 + MER5A DNA MER1_type 1 187 -2 1896 188 45 47 chr9 23219874 23219909 -94642718 - L1MB7 LINE L1 -12 6172 6138 1867 151 9 103 chr9 23219909 23220334 -94642293 + MLT1B LTR MaLR 4 388 -2 1896 188 45 47 chr9 23220334 23220787 -94641840 - L1MB7 LINE L1 -46 6138 5685 321 299 0 13 chr9 23221643 23221720 -94640907 - L2 LINE L2 -31 3241 3166 233 378 32 13 chr9 23222086 23222242 -94640385 - L2 LINE L2 -222 3050 2892 289 305 205 26 chr9 23222690 23222880 -94639747 + MIR SINE MIR 2 225 -37 286 338 125 0 chr9 23222968 23223104 -94639523 + MIR SINE MIR 81 233 -29 328 313 121 23 chr9 23223409 23223674 -94638953 - LTR16A LTR ERVL 0 450 160 241 291 117 29 chr9 23223759 23223862 -94638765 - LTR16A LTR ERVL -338 112 1 881 272 0 44 chr9 23224577 23224827 -94637800 - MIR SINE MIR -3 259 21 255 343 29 58 chr9 23225043 23225215 -94637412 + MIR SINE MIR 46 212 -50 764 185 93 44 chr9 23225860 23226065 -94636562 - L2 LINE L2 0 3313 3099 1597 193 28 128 chr9 23226253 23226824 -94635803 - MER67D LTR ERV1 0 514 1 2091 136 131 13 chr9 23228611 23228994 -94633633 - MSTA LTR MaLR 0 428 1 285 29 0 0 chr9 23230140 23230174 -94632453 + (CA)n Simple_repeat Simple_repeat 2 35 0 244 321 87 82 chr9 23230174 23230358 -94632269 + L2 LINE L2 2864 3048 -224 234 290 16 0 chr9 23230748 23230810 -94631817 + L2 LINE L2 3198 3260 -12 1043 133 53 142 chr9 23230963 23231302 -94631325 + MER33 DNA MER1_type 16 324 0 2296 107 10 0 chr9 23232509 23232817 -94629810 + AluSx SINE Alu 1 311 -1 791 170 29 136 chr9 23233163 23233377 -94629250 + MLT1A2 LTR MaLR 184 369 -5 410 218 6 0 chr9 23234295 23234451 -94628176 + (TA)n Simple_repeat Simple_repeat 2 158 0 184 80 93 13 chr9 23234476 23234551 -94628076 + (TA)n Simple_repeat Simple_repeat 1 81 0 455 118 13 0 chr9 23234635 23234711 -94627916 + (TATATG)n Simple_repeat Simple_repeat 1 77 0 180 299 312 0 chr9 23236392 23236469 -94626158 - L2 LINE L2 -16 3297 3197 289 334 135 55 chr9 23236727 23237128 -94625499 - L2 LINE L2 -412 2902 2470 1969 147 3 3 chr9 23237209 23237508 -94625119 + AluJb SINE Alu 2 300 -12 329 360 98 39 chr9 23238462 23238851 -94623776 + L2 LINE L2 2356 2767 -547 512 303 11 11 chr9 23238913 23239088 -94623539 + L1ME LINE L1 3 177 -5893 334 217 0 0 chr9 23239677 23239737 -94622890 + MER58C DNA MER1_type 39 98 -117 215 229 16 0 chr9 23239739 23239800 -94622827 + GA-rich Low_complexity Low_complexity 3 64 0 319 250 50 0 chr9 23239814 23239914 -94622713 + MER58C DNA MER1_type 103 207 -8 407 319 65 29 chr9 23239917 23240427 -94622200 + L1ME LINE L1 557 1093 -4981 470 291 148 14 chr9 23240768 23240978 -94621649 - MIR SINE MIR -12 250 13 1754 180 83 21 chr9 23241047 23241420 -94621207 - MSTD LTR MaLR 0 396 1 3214 255 98 34 chr9 23241425 23242306 -94620321 - MSTD-int LTR MaLR -5 1730 794 314 292 92 79 chr9 23242947 23243040 -94619587 - MIR SINE MIR 0 262 172 2041 174 36 71 chr9 23243040 23243563 -94619064 + MLT1D LTR MaLR 1 505 0 314 292 92 79 chr9 23243563 23243709 -94618918 - MIR SINE MIR -90 172 20 2218 118 42 91 chr9 23243891 23244078 -94618549 + MSTA LTR MaLR 1 196 -232 1348 113 214 23 chr9 23244078 23244335 -94618292 + AluSg1 SINE Alu 1 306 -3 2218 118 42 91 chr9 23244335 23244347 -94618280 + MSTA LTR MaLR 196 207 -221 1885 105 3 82 chr9 23244347 23244652 -94617975 + AluSx SINE Alu 1 281 -31 2218 118 42 91 chr9 23244652 23244900 -94617727 + MSTA LTR MaLR 207 427 -1 255 211 128 20 chr9 23245924 23246034 -94616593 - MLT1E1 LTR MaLR -13 641 402 340 316 143 0 chr9 23246686 23246854 -94615773 + MIR SINE MIR 46 237 -25 293 253 184 0 chr9 23247364 23247451 -94615176 + L2 LINE L2 3169 3271 -1 25 51 0 0 chr9 23248075 23248114 -94614513 + AT_rich Low_complexity Low_complexity 1 39 0 31 58 0 0 chr9 23248195 23248247 -94614380 + AT_rich Low_complexity Low_complexity 1 52 0 358 266 122 47 chr9 23248382 23248596 -94614031 - L1ME4a LINE L1 -193 5928 5699 331 271 164 0 chr9 23248968 23249090 -94613537 - L2 LINE L2 0 3313 3172 1019 318 93 7 chr9 23249216 23249637 -94612990 - L2 LINE L2 -368 2946 2490 1433 214 0 11 chr9 23249646 23249922 -94612705 + AluJb SINE Alu 1 273 -39 806 98 0 8 chr9 23249927 23250050 -94612577 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 3664 286 94 78 chr9 23250073 23252454 -94610173 - L2 LINE L2 -830 2484 67 1609 210 7 0 chr9 23253721 23254021 -94608606 + AluJo SINE Alu 3 304 -8 5810 31 0 0 chr9 23254648 23255325 -94607302 + L1PA5 LINE L1 5465 6141 -13 902 275 9 9 chr9 23255372 23255601 -94607026 - MIR SINE MIR 0 262 34 25 65 0 0 chr9 23257008 23257054 -94605573 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 23257102 23257134 -94605493 + AT_rich Low_complexity Low_complexity 1 32 0 255 263 0 175 chr9 23257646 23257806 -94604821 + L2 LINE L2 3065 3196 -76 244 286 36 0 chr9 23257913 23257997 -94604630 + MIR SINE MIR 128 214 -48 216 0 0 0 chr9 23258206 23258230 -94604397 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 208 224 82 0 chr9 23260088 23260137 -94602490 + L2 LINE L2 3216 3268 -4 1864 161 25 6 chr9 23260250 23260573 -94602054 + MLT2D LTR ERVL 2 330 -84 278 278 0 46 chr9 23260575 23260683 -94601944 + (CATATA)n Simple_repeat Simple_repeat 2 104 0 293 125 0 0 chr9 23260684 23260724 -94601903 + MLT2D LTR ERVL 350 389 -8 517 284 0 0 chr9 23261851 23261996 -94600631 + FLAM_A SINE Alu 1 145 0 216 335 44 112 chr9 23262090 23262520 -94600107 + L2 LINE L2 2834 3234 -38 363 187 193 0 chr9 23262534 23262654 -94599973 - MIR SINE MIR -1 261 114 180 0 0 0 chr9 23262746 23262766 -94599861 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 273 98 0 0 chr9 23264299 23264340 -94598287 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 248 182 18 18 chr9 23264543 23264598 -94598029 + GA-rich Low_complexity Low_complexity 4 58 0 2359 83 0 3 chr9 23264690 23264990 -94597637 - AluSp SINE Alu -14 299 1 2007 156 43 109 chr9 23265336 23265842 -94596785 + MER21A LTR ERV1 459 931 0 342 160 40 0 chr9 23265842 23265917 -94596710 + L1MA5 LINE L1 6223 6300 0 5350 160 31 23 chr9 23265942 23267435 -94595192 + L1MA7 LINE L1 4767 6267 -24 216 333 102 61 chr9 23267527 23268347 -94594280 + L2 LINE L2 222 1075 -2239 201 306 0 42 chr9 23268377 23268449 -94594178 + L2 LINE L2 1176 1244 -2070 523 167 7 90 chr9 23269672 23269816 -94592811 + MER94 DNA DNA 1 132 -2 656 118 20 0 chr9 23270717 23270819 -94591808 - MER39B LTR ERV1 -76 577 474 574 121 0 11 chr9 23270819 23270910 -94591717 - MER4A LTR ERV1 0 664 575 * 1051 84 11 13 chr9 23270909 23271202 -94591425 - MER4A LTR ERV1 -275 389 30 2994 103 14 52 chr9 23271231 23271728 -94590899 - MER39B LTR ERV1 -175 478 1 265 343 67 22 chr9 23271745 23271879 -94590748 + MIR SINE MIR 15 154 -108 243 241 96 12 chr9 23272128 23272211 -94590416 + MIR SINE MIR 102 191 -71 350 227 17 92 chr9 23274959 23275078 -94587549 + LTR37B LTR ERV1 1 110 -358 695 198 19 37 chr9 23275121 23275283 -94587344 + MER58 DNA MER1_type 8 166 -2254 26 0 0 0 chr9 23276517 23276543 -94586084 + GC_rich Low_complexity Low_complexity 1 26 0 234 296 71 10 chr9 23276693 23276791 -94585836 + MIR SINE MIR 159 262 0 21 57 0 0 chr9 23277182 23277217 -94585410 + GC_rich Low_complexity Low_complexity 1 35 0 468 0 0 0 chr9 23277336 23277388 -94585239 + (CA)n Simple_repeat Simple_repeat 2 53 0 382 277 31 82 chr9 23279056 23279215 -94583412 - MIR3 SINE MIR -9 199 49 1786 159 73 9 chr9 23279898 23280213 -94582414 + MLT1A1 LTR MaLR 25 359 -6 675 260 164 46 chr9 23280234 23280715 -94581912 - L2 LINE L2 -354 2960 2423 1964 143 0 0 chr9 23281232 23281518 -94581109 + AluSx SINE Alu 1 286 -26 479 291 57 6 chr9 23281821 23281979 -94580648 - MER20 DNA MER1_type -26 193 28 896 199 74 0 chr9 23282353 23282529 -94580098 + MER5A DNA MER1_type 1 189 0 708 162 69 123 chr9 23282591 23282653 -94579974 - MLT1D LTR MaLR -5 500 436 1804 155 7 30 chr9 23282653 23282957 -94579670 + AluJb SINE Alu 1 297 -15 708 162 69 123 chr9 23282957 23283098 -94579529 - MLT1D LTR MaLR -69 436 308 * 713 112 0 0 chr9 23283093 23283191 -94579436 + MSTB2 LTR MaLR 358 455 -2 1085 165 33 0 chr9 23283195 23283377 -94579250 + MLT1B LTR MaLR 152 339 -51 1030 185 189 37 chr9 23283378 23283675 -94578952 - MLT1D LTR MaLR -163 342 1 2444 82 0 0 chr9 23283708 23284011 -94578616 + AluY SINE Alu 1 303 -8 290 252 198 9 chr9 23284034 23284145 -94578482 + MER5B DNA MER1_type 5 136 -42 1246 195 25 4 chr9 23284425 23284661 -94577966 - MLT1B LTR MaLR 0 390 150 560 68 0 0 chr9 23284663 23284736 -94577891 - MSTB2 LTR MaLR -2 455 383 518 230 171 46 chr9 23284769 23285008 -94577619 - MSTB2 LTR MaLR -188 269 1 * 846 180 40 0 chr9 23285008 23285155 -94577472 - MLT1B LTR MaLR -236 154 2 241 231 161 39 chr9 23287019 23287149 -94575478 + MIR SINE MIR 40 185 -77 506 268 139 19 chr9 23287169 23287378 -94575249 + MIR SINE MIR 4 237 -25 235 188 0 31 chr9 23288514 23288578 -94574049 + T-rich Low_complexity Low_complexity 2 63 0 237 271 16 33 chr9 23289081 23289203 -94573424 + (TATATG)n Simple_repeat Simple_repeat 1 120 0 227 226 129 54 chr9 23290562 23290655 -94571972 + L2 LINE L2 717 816 -2498 2019 194 51 13 chr9 23290789 23291237 -94571390 - L1MDa LINE L1 -4255 2285 1821 790 255 21 43 chr9 23291629 23291890 -94570737 - MIR SINE MIR 0 262 12 639 305 136 36 chr9 23292092 23292569 -94570058 - L2 LINE L2 -2 3311 2776 808 254 47 2 chr9 23292600 23292831 -94569796 - L1ME3 LINE L1 0 6162 5935 2568 58 15 0 chr9 23292831 23293173 -94569454 + L1P LINE L1 2266 2612 -3534 9654 165 47 6 chr9 23293277 23296535 -94566092 + L1PBa LINE L1 1333 4728 -2134 740 78 48 0 chr9 23296536 23296639 -94565988 + AluY SINE Alu 2 109 -202 185 208 146 0 chr9 23296792 23296840 -94565787 - L2 LINE L2 -2 3311 3257 16126 72 14 0 chr9 23297117 23299220 -94563407 + L1P LINE L1 206 2338 -3808 275 265 108 48 chr9 23299326 23299492 -94563135 - MLT-int LTR MaLR -656 1079 904 275 292 92 79 chr9 23300256 23300349 -94562278 - MIR SINE MIR 0 262 172 2256 174 36 71 chr9 23300349 23300872 -94561755 + MLT1D LTR MaLR 1 505 0 275 292 92 79 chr9 23300872 23301018 -94561609 - MIR SINE MIR -90 172 20 1070 118 70 5 chr9 23301200 23301386 -94561241 + MSTA LTR MaLR 1 198 -230 1286 122 210 30 chr9 23301386 23301648 -94560979 + AluSg1 SINE Alu 1 309 0 2458 90 0 0 chr9 23301655 23301965 -94560662 + AluSq SINE Alu 1 310 -3 2185 120 0 0 chr9 23301967 23302259 -94560368 + AluSq SINE Alu 1 292 -21 221 185 167 0 chr9 23302363 23302417 -94560210 + L2 LINE L2 2125 2187 -1127 1211 235 129 70 chr9 23302418 23303293 -94559334 + L2 LINE L2 2370 3306 -7 1216 141 120 43 chr9 23303387 23303618 -94559009 - Charlie5 DNA MER1_type 0 2624 2359 2176 113 23 0 chr9 23303618 23303919 -94558708 - AluSx SINE Alu -4 308 1 1216 141 120 43 chr9 23303919 23304013 -94558614 - Charlie5 DNA MER1_type -265 2359 2274 591 152 54 9 chr9 23304037 23304149 -94558478 - MER3 DNA MER1_type -41 168 52 243 321 266 21 chr9 23304162 23304452 -94558175 + L2 LINE L2 2899 3259 -13 1937 123 14 20 chr9 23304883 23305175 -94557452 + AluSq SINE Alu 2 291 -22 1556 187 13 38 chr9 23306182 23306497 -94556130 + MLT1A1 LTR MaLR 1 307 -58 4384 193 26 19 chr9 23306597 23307711 -94554916 - L1P5 LINE L1 -534 6333 5211 5690 49 3 3 chr9 23307711 23308383 -94554244 - L1PA4 LINE L1 -1 6154 5483 4384 193 26 19 chr9 23308383 23308685 -94553942 - L1P5 LINE L1 -1656 5211 4913 3320 190 9 1 chr9 23308684 23309337 -94553290 - L1 LINE L1 -3261 3601 2944 * 1891 86 71 0 chr9 23309339 23309606 -94553021 + L1PBa LINE L1 2223 2508 -4355 1704 125 48 7 chr9 23309608 23311400 -94551227 - L1P5 LINE L1 -4603 2260 182 20658 50 6 1 chr9 23311500 23314802 -94547825 + L1PA5 LINE L1 2816 6131 -23 275 107 53 40 chr9 23314816 23314891 -94547736 + GA-rich Low_complexity Low_complexity 1 76 0 799 115 5 11 chr9 23314891 23315024 -94547603 - THE1C LTR MaLR -25 350 212 10380 144 20 3 chr9 23315159 23317495 -94545132 + L1PA14 LINE L1 3562 5936 -225 6665 214 29 32 chr9 23317597 23318151 -94544476 + L1P LINE L1 3111 3665 -2481 243 0 0 0 chr9 23318151 23318178 -94544449 + (CA)n Simple_repeat Simple_repeat 2 28 0 6665 214 29 32 chr9 23318178 23318732 -94543895 + L1P LINE L1 3665 4219 -1927 2152 41 4 0 chr9 23318732 23318977 -94543650 + L1PA5 LINE L1 5903 6148 -6 6665 214 29 32 chr9 23318977 23319539 -94543088 + L1P LINE L1 4219 4777 -1369 235 184 0 0 chr9 23319539 23319577 -94543050 - MSTA LTR MaLR 0 428 391 3327 138 52 0 chr9 23319585 23320106 -94542521 + L1P LINE L1 11 558 -5588 * 17718 51 15 1 chr9 23320104 23322334 -94540293 + L1P LINE L1 2607 4867 -1279 217 229 213 0 chr9 23322544 23322605 -94540022 - MIR3 SINE MIR -15 193 120 1504 193 35 3 chr9 23323000 23323290 -94539337 + AluJo SINE Alu 1 299 -13 515 144 22 0 chr9 23325120 23325210 -94537417 + AluY SINE Alu 218 309 -2 588 203 51 13 chr9 23325746 23325904 -94536723 - Charlie5 DNA MER1_type -35 2577 2414 255 311 40 0 chr9 23326032 23326106 -94536521 - L3 LINE CR1 -435 1142 1066 318 289 26 26 chr9 23326415 23326567 -94536060 - L1MC4a LINE L1 -1944 5864 5713 834 214 154 15 chr9 23326771 23328605 -94534022 + L1ME2 LINE L1 3674 5866 -298 1902 108 28 14 chr9 23328960 23329247 -94533380 - THE1C LTR MaLR 0 375 85 360 0 0 0 chr9 23379913 23379953 -94482674 + (GA)n Simple_repeat Simple_repeat 1 40 0 301 282 178 19 chr9 23380006 23380219 -94482408 - L1ME LINE L1 -276 5845 5599 1614 101 55 5 chr9 23380497 23380716 -94481911 - MER30 DNA MER1_type 0 230 1 25 90 0 0 chr9 23381993 23382060 -94480567 + AT_rich Low_complexity Low_complexity 1 67 0 369 0 0 0 chr9 23383101 23383142 -94479485 + (TG)n Simple_repeat Simple_repeat 2 42 0 293 68 23 0 chr9 23383794 23383838 -94478789 + (CCCCCA)n Simple_repeat Simple_repeat 4 48 0 233 281 191 56 chr9 23385691 23385958 -94476669 + L2 LINE L2 2951 3253 -60 274 130 43 0 chr9 23386233 23386279 -94476348 - MLT2D LTR ERVL 0 414 367 227 232 12 73 chr9 23386296 23386319 -94476308 + (TATATG)n Simple_repeat Simple_repeat 1 24 -53 1588 138 50 133 chr9 23386319 23386695 -94475932 - MER7A DNA MER2_type -2 344 2 227 232 12 73 chr9 23386695 23386753 -94475874 + (TATATG)n Simple_repeat Simple_repeat 24 77 0 366 80 0 0 chr9 23386756 23386806 -94475821 + (GA)n Simple_repeat Simple_repeat 1 50 0 1977 135 94 18 chr9 23386807 23387147 -94475480 - MLT2D LTR ERVL -48 366 1 383 328 77 8 chr9 23387619 23387804 -94474823 - MIR SINE MIR -56 206 16 264 279 182 36 chr9 23388325 23388618 -94474009 + L1MC4a LINE L1 5380 5720 -401 304 254 15 0 chr9 23388710 23388844 -94473783 + (TA)n Simple_repeat Simple_repeat 2 137 0 358 258 84 105 chr9 23389043 23389377 -94473250 + L1MC4a LINE L1 5776 6102 -19 311 267 50 51 chr9 23389384 23389509 -94473118 - MER5B DNA MER1_type -51 138 4 22 35 0 0 chr9 23390027 23390056 -94472571 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr9 23392201 23392226 -94470401 + AT_rich Low_complexity Low_complexity 1 25 0 368 232 196 0 chr9 23393317 23393455 -94469172 + MIR SINE MIR 84 248 -14 288 0 0 0 chr9 23394409 23394441 -94468186 + (TG)n Simple_repeat Simple_repeat 1 32 0 2035 111 14 10 chr9 23396376 23396688 -94465939 + AluSx SINE Alu 1 313 0 28 29 0 0 chr9 23397088 23397123 -94465504 + AT_rich Low_complexity Low_complexity 1 35 0 360 306 148 14 chr9 23400661 23400870 -94461757 - MIR SINE MIR -25 237 1 1881 157 106 52 chr9 23402235 23402604 -94460023 - MLT1B LTR MaLR -1 389 1 1448 219 38 98 chr9 23402656 23402750 -94459877 - L1MC5 LINE L1 -372 7589 7491 1462 197 3 20 chr9 23402750 23403049 -94459578 - AluJo SINE Alu -17 295 2 1448 219 38 98 chr9 23403049 23403454 -94459173 - L1MC5 LINE L1 -470 7491 7133 1738 143 24 31 chr9 23403454 23403763 -94458864 - AluJo SINE Alu 0 307 1 1448 219 38 98 chr9 23403763 23403900 -94458727 - L1MC5 LINE L1 -828 7133 6989 6170 27 1 1 chr9 23403912 23404587 -94458040 - L1PA3 LINE L1 -5 6150 5476 1202 219 40 18 chr9 23404590 23404919 -94457708 - L1M4 LINE L1 -1314 4832 4497 1056 41 0 0 chr9 23404936 23405058 -94457569 - L1PA3 LINE L1 0 6155 6034 3265 18 0 0 chr9 23405058 23405533 -94457094 - L1P2 LINE L1 -666 5489 5015 * 5040 29 7 0 chr9 23405524 23406112 -94456515 + L1P2 LINE L1 4415 5006 -1140 829 206 19 104 chr9 23406116 23406432 -94456195 - L1MC5 LINE L1 -966 6995 6707 1453 103 0 5 chr9 23406443 23406637 -94455990 + AluSg SINE Alu 1 193 -117 1728 81 0 0 chr9 23407351 23407562 -94455065 + AluSq SINE Alu 12 222 -91 2058 98 20 3 chr9 23407674 23407969 -94454658 + AluSx SINE Alu 1 300 -12 818 315 125 35 chr9 23408217 23408972 -94453655 - L2 LINE L2 -193 3079 2260 6772 86 6 15 chr9 23409177 23410558 -94452069 - L1PA13 LINE L1 -19 6144 4652 240 86 0 0 chr9 23410558 23410593 -94452034 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6772 86 6 15 chr9 23410593 23411143 -94451484 - L1PA13 LINE L1 -1511 4652 4099 12598 205 48 37 chr9 23411163 23412750 -94449877 - L1PA12 LINE L1 -3205 4379 2812 1794 140 14 34 chr9 23412750 23413042 -94449585 + AluSx SINE Alu 1 286 -26 12598 205 48 37 chr9 23413042 23416454 -94446173 - L1PA12 LINE L1 -4772 2812 5 22 0 0 0 chr9 23416476 23416498 -94446129 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr9 23416523 23416566 -94446061 + AT_rich Low_complexity Low_complexity 1 43 0 438 302 24 0 chr9 23416945 23417071 -94445556 - L2 LINE L2 -7 3306 3178 27 73 0 0 chr9 23417480 23417535 -94445092 + AT_rich Low_complexity Low_complexity 1 55 0 376 239 261 16 chr9 23418281 23418587 -94444040 + L1MC4 LINE L1 6964 7344 -698 332 286 193 11 chr9 23419890 23420112 -94442515 + MIR SINE MIR 10 262 0 350 216 0 29 chr9 23420366 23420468 -94442159 + MER113 DNA MER1_type? 18 116 -405 307 182 45 15 chr9 23420583 23420649 -94441978 + MER113 DNA MER1_type? 453 520 -1 1347 236 130 25 chr9 23421005 23421404 -94441223 + MLT1E LTR MaLR 34 474 -119 213 324 0 15 chr9 23421597 23421665 -94440962 + CT-rich Low_complexity Low_complexity 2 68 0 2022 134 20 13 chr9 23422227 23422533 -94440094 + MER1B DNA MER1_type 32 339 0 410 315 97 28 chr9 23423096 23423312 -94439315 - MIR SINE MIR -12 250 20 909 243 23 18 chr9 23423967 23424185 -94438442 - MER58A DNA MER1_type -1 223 5 517 319 81 0 chr9 23424200 23424410 -94438217 + MIR SINE MIR 35 261 -1 249 324 90 95 chr9 23426250 23426472 -94436155 + L2 LINE L2 3048 3268 -4 214 195 0 0 chr9 23427622 23427663 -94434964 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1759 202 116 7 chr9 23429069 23429490 -94433137 + MLT1C LTR MaLR 1 467 0 433 341 22 22 chr9 23429526 23429708 -94432919 - MIR SINE MIR -60 202 21 251 311 61 23 chr9 23430094 23430226 -94432401 - MIR SINE MIR -60 202 66 308 231 198 0 chr9 23431546 23431637 -94430990 - L2 LINE L2 0 3313 3205 227 150 25 0 chr9 23432435 23432475 -94430152 - L2 LINE L2 -2 3311 3271 308 223 95 40 chr9 23432918 23433066 -94429561 + MER113 DNA MER1_type? 1 156 -365 28 71 0 0 chr9 23433080 23433136 -94429491 + AT_rich Low_complexity Low_complexity 1 56 0 297 0 0 0 chr9 23434334 23434367 -94428260 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 345 122 17 chr9 23434519 23434738 -94427889 - MIR SINE MIR -3 259 11 189 280 20 0 chr9 23435485 23435535 -94427092 - L2 LINE L2 -8 3264 3214 * 371 390 16 16 chr9 23435510 23435700 -94426927 - MIR SINE MIR -28 234 45 292 315 98 33 chr9 23436206 23436390 -94426237 + MIR SINE MIR 11 206 -56 204 191 0 43 chr9 23436452 23436499 -94426128 + CT-rich Low_complexity Low_complexity 4 48 0 1800 171 0 25 chr9 23437075 23437390 -94425237 - AluJb SINE Alu -5 307 1 431 296 70 25 chr9 23438086 23438285 -94424342 + MIR SINE MIR 45 252 -10 276 335 177 5 chr9 23438965 23439174 -94423453 + MIR SINE MIR 18 262 0 228 317 32 54 chr9 23439465 23439651 -94422976 - MIR SINE MIR -31 231 50 274 305 63 32 chr9 23441525 23441620 -94421007 + L2 LINE L2 3175 3272 0 400 239 34 0 chr9 23443276 23443364 -94419263 + MIR SINE MIR 76 166 -96 * 1067 228 28 39 chr9 23443351 23443605 -94419022 - MIR SINE MIR 0 262 12 285 379 122 2 chr9 23443744 23443965 -94418662 - MIR SINE MIR -2 260 16 255 107 48 48 chr9 23443967 23444070 -94418557 + T-rich Low_complexity Low_complexity 3 105 0 1865 98 106 4 chr9 23444083 23444348 -94418279 - AluSx SINE Alu -20 292 1 22 56 0 0 chr9 23444354 23444390 -94418237 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr9 23444406 23444435 -94418192 + AT_rich Low_complexity Low_complexity 1 29 0 846 157 24 0 chr9 23444439 23444605 -94418022 - L1MA7 LINE L1 -9 6282 6113 194 222 0 0 chr9 23445088 23445124 -94417503 - L2 LINE L2 -15 3298 3263 1703 95 52 128 chr9 23445335 23445662 -94416965 - AluSg SINE Alu -7 303 2 979 285 107 38 chr9 23445820 23446353 -94416274 + L2 LINE L2 1961 2530 -784 39 22 0 0 chr9 23446420 23446466 -94416161 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 23446688 23446720 -94415907 + AT_rich Low_complexity Low_complexity 1 32 0 1950 133 10 3 chr9 23446822 23447115 -94415512 + AluJb SINE Alu 1 295 -17 1474 122 0 5 chr9 23447129 23447334 -94415293 + AluSq SINE Alu 1 204 -109 1256 121 0 0 chr9 23447335 23447508 -94415119 + AluSq SINE Alu 129 301 -12 590 263 34 6 chr9 23447855 23448030 -94414597 - MLT1I LTR MaLR 0 409 230 2339 97 26 3 chr9 23448038 23448380 -94414247 - THE1A LTR MaLR 0 355 6 11622 100 9 0 chr9 23448385 23449951 -94412676 - THE1A-int LTR MaLR 0 1580 1 2579 92 3 14 chr9 23449951 23450310 -94412317 - THE1A LTR MaLR 0 355 1 246 265 15 0 chr9 23450373 23450441 -94412186 - MLT1J1 LTR MaLR -284 162 94 21 0 0 0 chr9 23450955 23450976 -94411651 + AT_rich Low_complexity Low_complexity 1 21 0 378 315 43 19 chr9 23450978 23451140 -94411487 + MIR SINE MIR 41 206 -56 311 270 87 56 chr9 23451976 23452102 -94410525 + MIR SINE MIR 24 153 -109 225 0 0 0 chr9 23452292 23452317 -94410310 + (GA)n Simple_repeat Simple_repeat 2 26 0 209 363 131 29 chr9 23452637 23452951 -94409676 - L2 LINE L2 -1905 1409 1064 1539 174 82 14 chr9 23455506 23455788 -94406839 - AluJo SINE Alu -11 301 1 226 86 0 0 chr9 23455919 23455954 -94406673 - L1P1 LINE L1 -427 5728 5694 3640 43 2 0 chr9 23456077 23456520 -94406107 + L1PA5 LINE L1 5711 6154 0 357 82 0 0 chr9 23456819 23456868 -94405759 + (CA)n Simple_repeat Simple_repeat 2 50 0 272 254 0 0 chr9 23456949 23457008 -94405619 + L2 LINE L2 3209 3267 -5 387 324 75 72 chr9 23457523 23457884 -94404743 - L2 LINE L2 -69 3203 2842 638 91 41 41 chr9 23458802 23458815 -94403812 - AluSg/x SINE Alu 0 310 298 1638 172 9 23 chr9 23458815 23459158 -94403469 - L1MA6 LINE L1 -1 6299 5962 638 91 41 41 chr9 23459158 23459265 -94403362 - AluSg/x SINE Alu -11 299 190 421 314 62 119 chr9 23459549 23459919 -94402708 - L2 LINE L2 0 3272 2924 331 325 96 10 chr9 23460203 23460412 -94402215 + MLT1K LTR MaLR 315 541 -47 387 291 104 15 chr9 23460431 23460565 -94402062 - MIR3 SINE MIR -38 170 25 619 86 0 0 chr9 23460581 23460674 -94401953 - AluY SINE Alu 0 311 219 204 278 252 46 chr9 23460804 23460955 -94401672 + MIR3 SINE MIR 21 202 -6 207 225 0 0 chr9 23461065 23461105 -94401522 - L2 LINE L2 -13 3300 3261 286 284 97 30 chr9 23461750 23461884 -94400743 + MIR SINE MIR 33 175 -87 257 305 48 9 chr9 23462104 23462209 -94400418 + MIR SINE MIR 59 167 -95 1848 157 17 14 chr9 23463161 23463455 -94399172 - AluJb SINE Alu -16 296 2 232 250 0 29 chr9 23464207 23464275 -94398352 - MER113 DNA MER1_type? -3 518 453 533 239 91 10 chr9 23464278 23464487 -94398140 - MER113 DNA MER1_type? -295 226 1 233 368 62 28 chr9 23464676 23464820 -94397807 - L2 LINE L2 -160 3112 2964 2270 102 10 3 chr9 23465343 23465647 -94396980 - AluSq SINE Alu -7 306 1 270 53 13 133 chr9 23465737 23465812 -94396815 - Charlie5 DNA MER1_type -38 2574 2509 1032 228 3 81 chr9 23465835 23465976 -94396651 - L1MA9 LINE L1 -89 6223 6072 2053 122 30 13 chr9 23465976 23466279 -94396348 - AluJb SINE Alu -4 308 1 1032 228 3 81 chr9 23466279 23466518 -94396109 - L1MA9 LINE L1 -240 6072 5873 888 206 109 0 chr9 23466521 23466788 -94395839 - Charlie5 DNA MER1_type -83 2529 2234 295 278 0 0 chr9 23466817 23466907 -94395720 - Charlie5 DNA MER1_type -2514 98 9 528 296 100 98 chr9 23467253 23467632 -94394995 - L3 LINE CR1 -288 1289 910 386 235 174 45 chr9 23467849 23467981 -94394646 - MER5A DNA MER1_type -1 188 40 2106 107 0 71 chr9 23468496 23468832 -94393795 + AluSx SINE Alu 1 312 0 21 36 0 0 chr9 23470570 23470598 -94392029 + AT_rich Low_complexity Low_complexity 1 28 0 223 250 0 47 chr9 23470991 23471055 -94391572 + MIR SINE MIR 75 135 -127 403 313 39 0 chr9 23471662 23471790 -94390837 - MIR SINE MIR -82 180 48 519 282 144 0 chr9 23472362 23472550 -94390077 - MIR SINE MIR 0 262 48 285 326 49 71 chr9 23472759 23472943 -94389684 - MER5A DNA MER1_type 0 189 10 221 272 281 0 chr9 23472962 23473186 -94389441 - L2 LINE L2 -816 2498 2212 429 323 72 20 chr9 23473351 23473546 -94389081 - MIR SINE MIR -37 225 21 2469 46 0 7 chr9 23474732 23475035 -94387592 + AluY SINE Alu 1 301 -10 281 357 41 6 chr9 23475317 23475488 -94387139 + MIR SINE MIR 36 212 -50 207 100 0 0 chr9 23476033 23476063 -94386564 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 885 276 138 27 chr9 23476250 23476800 -94385827 + MLT1L LTR MaLR 1 611 -4 1262 247 68 9 chr9 23476958 23477412 -94385215 + MER113 DNA MER1_type? 4 484 -37 240 167 0 0 chr9 23477714 23477762 -94384865 + (CA)n Simple_repeat Simple_repeat 1 48 0 1630 160 7 65 chr9 23478734 23479040 -94383587 - AluJb SINE Alu -20 292 5 36118 41 5 0 chr9 23479125 23484601 -94378026 - L1PA4 LINE L1 -2 6153 656 5146 43 9 1 chr9 23484599 23485293 -94377334 - L1P LINE L1 -3208 2938 2240 * 239 290 20 40 chr9 23485327 23485427 -94377200 - L2 LINE L2 -241 3031 2934 269 371 10 10 chr9 23485534 23485631 -94376996 - L2 LINE L2 0 3272 3176 406 257 30 10 chr9 23485638 23485739 -94376888 - L2 LINE L2 -31 3282 3180 396 343 34 56 chr9 23485787 23486111 -94376516 + L2 LINE L2 2661 2977 -337 335 236 0 9 chr9 23487454 23487564 -94375063 + (TATG)n Simple_repeat Simple_repeat 2 110 0 28 0 0 0 chr9 23487766 23487794 -94374833 + AT_rich Low_complexity Low_complexity 1 28 0 323 324 174 10 chr9 23487910 23488117 -94374510 - MIR SINE MIR -20 242 2 553 328 117 49 chr9 23488170 23488762 -94373865 - L2 LINE L2 -3 3269 2619 566 201 33 76 chr9 23488762 23488946 -94373681 + MER104 DNA MER2_type 2 177 -3 553 328 117 49 chr9 23488946 23488984 -94373643 - L2 LINE L2 -653 2619 2585 3213 216 38 20 chr9 23489442 23490331 -94372296 - L1MB8 LINE L1 -6 6172 5268 333 0 0 0 chr9 23490960 23490997 -94371630 + (CA)n Simple_repeat Simple_repeat 2 38 0 589 174 87 127 chr9 23491646 23491922 -94370705 - MLT1C LTR MaLR 0 467 203 185 233 23 0 chr9 23492209 23492252 -94370375 - MIR3 SINE MIR -3 205 162 434 18 18 0 chr9 23492426 23492481 -94370146 + (TG)n Simple_repeat Simple_repeat 1 56 0 21 57 0 0 chr9 23492916 23492951 -94369676 + AT_rich Low_complexity Low_complexity 1 35 0 279 79 0 0 chr9 23493935 23493973 -94368654 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 253 305 161 45 chr9 23494142 23494365 -94368262 - MIR SINE MIR 0 262 14 688 236 7 0 chr9 23494578 23494726 -94367901 - MLT1G1 LTR MaLR 0 595 447 449 264 104 35 chr9 23494807 23495077 -94367550 - MLT1G1 LTR MaLR -327 263 14 534 244 59 92 chr9 23495091 23495203 -94367424 + MIR SINE MIR 1 115 -147 1984 108 0 59 chr9 23495203 23495372 -94367255 - AluSx SINE Alu -24 288 143 2219 122 0 0 chr9 23495372 23495675 -94366952 - AluSg SINE Alu -7 303 1 1984 108 0 59 chr9 23495675 23495811 -94366816 - AluSx SINE Alu -169 143 1 534 244 59 92 chr9 23495811 23495969 -94366658 + MIR SINE MIR 115 262 0 602 274 105 9 chr9 23496070 23496289 -94366338 - MIR SINE MIR 0 262 23 257 332 174 32 chr9 23496318 23496571 -94366056 - L2 LINE L2 -556 2758 2470 277 56 0 0 chr9 23497700 23497736 -94364891 - 5S rRNA rRNA -85 36 1 200 35 35 0 chr9 23498220 23498249 -94364378 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 388 333 46 7 chr9 23499253 23499406 -94363221 + MIR3 SINE MIR 47 205 -3 235 268 124 0 chr9 23499823 23499920 -94362707 - MIR SINE MIR -8 254 146 649 253 49 58 chr9 23500176 23500484 -94362143 - L1ME3A LINE L1 -213 5957 5653 357 333 29 29 chr9 23500491 23500629 -94361998 - MIR SINE MIR -120 142 5 241 311 11 0 chr9 23501369 23501459 -94361168 - MLT1K LTR MaLR 0 588 498 964 208 25 38 chr9 23502320 23502560 -94360067 - MLT1E1 LTR MaLR -1 653 417 593 211 180 77 chr9 23502569 23502830 -94359797 - MLT1E1 LTR MaLR -327 299 12 1334 281 41 10 chr9 23503642 23504059 -94358568 - LTR16B LTR ERVL 0 464 35 274 268 14 0 chr9 23504630 23504701 -94357926 + MER94 DNA DNA 61 132 -2 764 279 156 46 chr9 23505594 23506135 -94356492 - L2 LINE L2 -1 3312 2713 188 279 144 19 chr9 23507259 23507363 -94355264 - MIR SINE MIR -71 137 21 276 91 0 0 chr9 23507555 23507599 -94355028 + (GA)n Simple_repeat Simple_repeat 1 44 0 602 288 52 48 chr9 23508287 23508516 -94354111 + MIR SINE MIR 18 247 -15 341 247 130 7 chr9 23509246 23509400 -94353227 + MIR SINE MIR 22 194 -68 438 238 27 45 chr9 23509774 23509896 -94352731 - MIR SINE MIR -63 145 38 314 127 0 16 chr9 23510044 23510107 -94352520 + (CAT)n Simple_repeat Simple_repeat 3 64 0 321 89 0 0 chr9 23510217 23510262 -94352365 + (CAT)n Simple_repeat Simple_repeat 1 45 0 839 220 136 28 chr9 23510273 23510487 -94352140 - MIR SINE MIR -21 241 5 6895 136 35 8 chr9 23510786 23512881 -94349746 - L1MA5A LINE L1 0 6300 4056 691 277 26 60 chr9 23513025 23513375 -94349252 + L3 LINE CR1 1143 1480 -97 325 287 28 0 chr9 23514268 23514376 -94348251 + MARNA DNA Mariner 11 121 -465 444 286 52 30 chr9 23514510 23514741 -94347886 + MARNA DNA Mariner 218 453 -133 594 310 72 20 chr9 23514978 23515378 -94347249 + L1MC4a LINE L1 5488 5908 -1900 881 162 27 0 chr9 23515423 23515571 -94347056 - Tigger2a DNA MER2_type 0 444 293 533 168 0 10 chr9 23515572 23515673 -94346954 - Tigger2a DNA MER2_type -327 107 8 23 0 0 0 chr9 23515782 23515805 -94346822 + AT_rich Low_complexity Low_complexity 1 23 0 2323 49 18 0 chr9 23516005 23516290 -94346337 - AluY SINE Alu -6 305 16 2204 123 0 0 chr9 23516504 23516813 -94345814 - AluSg SINE Alu -1 309 1 309 304 108 52 chr9 23517319 23517513 -94345114 + MIR SINE MIR 8 212 -50 284 317 83 7 chr9 23517671 23517816 -94344811 - MIR SINE MIR -7 255 100 353 277 151 15 chr9 23520311 23520522 -94342105 - MIR SINE MIR -15 247 12 2528 61 0 0 chr9 23520918 23521229 -94341398 - AluY SINE Alu 0 311 1 193 296 0 70 chr9 23521633 23521704 -94340923 - MIR SINE MIR -188 74 9 1028 159 12 0 chr9 23521731 23521894 -94340733 + FRAM SINE Alu 2 166 0 2177 77 33 0 chr9 23522121 23522416 -94340211 - AluSg SINE Alu 0 304 1 258 248 20 10 chr9 23522430 23522531 -94340096 - L1MC5 LINE L1 -30 7931 7830 1982 135 35 0 chr9 23523652 23523940 -94338687 + AluSq SINE Alu 1 298 -15 788 254 49 18 chr9 23524348 23524572 -94338055 - MIR SINE MIR 0 262 32 207 0 0 0 chr9 23524606 23524629 -94337998 + (GA)n Simple_repeat Simple_repeat 2 24 0 665 317 128 20 chr9 23527353 23527813 -94334814 - L2 LINE L2 0 3313 2804 968 143 21 66 chr9 23528428 23528655 -94333972 + MLT1C LTR MaLR 6 223 -167 521 175 0 21 chr9 23528656 23528744 -94333883 + AluJ/FRAM SINE Alu 218 298 -14 1723 195 16 0 chr9 23528744 23529051 -94333576 + AluJo SINE Alu 1 312 0 1045 224 43 14 chr9 23529065 23529346 -94333281 + MLT1C LTR MaLR 171 459 -8 198 0 0 0 chr9 23529473 23529495 -94333132 + (T)n Simple_repeat Simple_repeat 1 22 0 1201 136 0 30 chr9 23529794 23529992 -94332635 - AluJo SINE Alu 0 312 121 468 308 13 40 chr9 23530354 23530578 -94332049 + MLT1H LTR MaLR 95 312 -237 216 0 0 0 chr9 23531424 23531448 -94331179 + (T)n Simple_repeat Simple_repeat 1 24 0 633 284 96 0 chr9 23532260 23532457 -94330170 + MER58A DNA MER1_type 1 216 -8 261 221 13 13 chr9 23532585 23532662 -94329965 + (TA)n Simple_repeat Simple_repeat 2 78 0 383 316 31 48 chr9 23532663 23532891 -94329736 - L1ME LINE L1 -641 5480 5257 26 0 0 0 chr9 23533049 23533075 -94329552 + AT_rich Low_complexity Low_complexity 1 26 0 1425 191 9 86 chr9 23533111 23533540 -94329087 - L1MC3 LINE L1 0 7785 7390 * 3360 169 54 73 chr9 23533537 23534448 -94328179 - L1MC3 LINE L1 -621 7164 6272 279 333 14 57 chr9 23535544 23535685 -94326942 - MIR SINE MIR -80 182 48 204 336 59 34 chr9 23535681 23535800 -94326827 + L2 LINE L2 3191 3312 -1 * 275 295 87 58 chr9 23536642 23536815 -94325812 + L2 LINE L2 2625 2802 -512 264 299 72 53 chr9 23538025 23538232 -94324395 + LTR16C LTR ERVL 187 397 -94 248 253 91 10 chr9 23538382 23538481 -94324146 + HAL1 LINE L1 1253 1359 -1148 674 244 188 36 chr9 23538536 23538929 -94323698 - HAL1 LINE L1 -651 1856 1404 248 208 19 0 chr9 23538958 23539011 -94323616 - HAL1 LINE L1 -1612 895 842 1265 272 89 29 chr9 23539026 23539295 -94323332 - L1ME LINE L1 -4426 1654 1403 180 0 0 0 chr9 23539295 23539315 -94323312 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1265 272 89 29 chr9 23539315 23540050 -94322577 - L1ME LINE L1 -4677 1403 713 2304 70 7 30 chr9 23540050 23540350 -94322277 + AluY SINE Alu 1 293 -18 1265 272 89 29 chr9 23540350 23540451 -94322176 - L1ME LINE L1 -5367 713 619 2317 85 3 25 chr9 23540451 23540768 -94321859 - AluSp SINE Alu -3 310 1 1265 272 89 29 chr9 23540768 23541200 -94321427 - L1ME LINE L1 -5461 619 42 278 372 15 15 chr9 23541435 23541572 -94321055 + L2 LINE L2 2933 3069 -203 1319 157 0 63 chr9 23541630 23541818 -94320809 + MLT1A1 LTR MaLR 127 296 -69 2389 78 3 0 chr9 23541818 23542114 -94320513 + AluY SINE Alu 1 297 -14 1319 157 0 63 chr9 23542114 23542180 -94320447 + MLT1A1 LTR MaLR 296 365 0 728 325 48 63 chr9 23542217 23542740 -94319887 + L2 LINE L2 2571 3081 -232 422 233 120 83 chr9 23542950 23543216 -94319411 + LTR33 LTR ERVL 238 513 -8 350 274 12 0 chr9 23543217 23543301 -94319326 + L2 LINE L2 3229 3313 0 363 297 102 0 chr9 23544859 23544987 -94317640 + L1MEd LINE L1 499 639 -5480 386 195 19 110 chr9 23545013 23545167 -94317460 - MER20 DNA MER1_type -75 144 5 561 75 252 28 chr9 23545241 23545375 -94317252 + FLAM_C SINE Alu 1 158 0 236 185 121 38 chr9 23545398 23545555 -94317072 + L1MEd LINE L1 700 869 -5250 903 262 148 15 chr9 23546658 23546990 -94315637 + L3b LINE CR1 1116 1491 -92 264 275 175 37 chr9 23547978 23548167 -94314460 - MIR SINE MIR -47 215 1 2406 85 3 0 chr9 23550174 23550481 -94312146 + AluY SINE Alu 1 308 -3 742 218 111 27 chr9 23550759 23550984 -94311643 + MIR SINE MIR 1 244 -18 650 223 68 62 chr9 23551006 23551298 -94311329 - L1ME1 LINE L1 -18 6148 5855 22 0 0 0 chr9 23551370 23551392 -94311235 + AT_rich Low_complexity Low_complexity 1 22 0 2437 99 47 63 chr9 23552275 23552497 -94310130 - L1PB2 LINE L1 -7 6144 5931 2433 58 3 0 chr9 23552497 23552792 -94309835 + AluY SINE Alu 1 296 -15 2437 99 47 63 chr9 23552792 23553012 -94309615 - L1PB2 LINE L1 -220 5931 5709 21 0 0 0 chr9 23553052 23553073 -94309554 + AT_rich Low_complexity Low_complexity 1 21 0 381 296 2 60 chr9 23553098 23553258 -94309369 - MIR SINE MIR -65 143 2 238 332 150 16 chr9 23553465 23553652 -94308975 + MIR SINE MIR 34 245 -17 405 355 30 6 chr9 23555351 23555517 -94307110 - MIR SINE MIR -72 190 21 500 275 97 80 chr9 23555824 23556317 -94306310 + L1ME4a LINE L1 4921 5428 -774 273 271 41 25 chr9 23556352 23556474 -94306153 + L1ME4a LINE L1 5480 5603 -518 1849 163 0 10 chr9 23556476 23556782 -94305845 + AluJb SINE Alu 1 303 -9 30 59 0 0 chr9 23556915 23556966 -94305661 + AT_rich Low_complexity Low_complexity 1 51 0 804 263 101 44 chr9 23556995 23557581 -94305046 - L1MC5 LINE L1 -64 7897 7279 500 265 33 20 chr9 23557699 23557967 -94304660 - L1MC4 LINE L1 -734 7227 6983 308 200 115 79 chr9 23557976 23558141 -94304486 + L1ME4a LINE L1 5713 5883 -238 23 0 0 0 chr9 23558405 23558428 -94304199 + AT_rich Low_complexity Low_complexity 1 23 0 375 41 0 0 chr9 23558640 23558689 -94303938 + (TG)n Simple_repeat Simple_repeat 2 50 0 215 343 112 15 chr9 23558912 23559046 -94303581 + MIR SINE MIR 110 256 -6 637 260 85 22 chr9 23559097 23559320 -94303307 + MIR SINE MIR 5 241 -21 1749 166 28 0 chr9 23560885 23561210 -94301417 - MLT2C2 LTR ERVL -126 338 5 1711 190 3 13 chr9 23561918 23562218 -94300409 - AluJo SINE Alu -15 297 1 255 226 160 38 chr9 23563068 23563119 -94299508 - L2 LINE L2 -16 3256 3213 2334 97 3 3 chr9 23563119 23563428 -94299199 + AluSx SINE Alu 1 309 -3 255 226 160 38 chr9 23563428 23563482 -94299145 - L2 LINE L2 -59 3213 3138 428 318 62 11 chr9 23564257 23564433 -94298194 - MIR SINE MIR -58 204 20 325 287 72 50 chr9 23564412 23564593 -94298034 + MIR SINE MIR 29 213 -49 * 27 62 0 0 chr9 23564985 23565033 -94297594 + AT_rich Low_complexity Low_complexity 1 48 0 358 196 21 10 chr9 23565043 23565140 -94297487 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 382 259 107 0 chr9 23565174 23565286 -94297341 + MIR SINE MIR 139 262 0 39258 58 6 1 chr9 23566560 23572604 -94290023 + L1PA5 LINE L1 76 6149 -5 26 50 0 0 chr9 23572929 23572969 -94289658 + AT_rich Low_complexity Low_complexity 1 40 0 27 92 0 0 chr9 23573070 23573146 -94289481 + AT_rich Low_complexity Low_complexity 1 76 0 336 267 86 43 chr9 23573215 23573402 -94289225 - L1MC4 LINE L1 -142 7900 7706 274 258 82 0 chr9 23573696 23573793 -94288834 - L1ME4a LINE L1 -83 6038 5934 18903 192 35 18 chr9 23573825 23575410 -94287217 + L1PA11 LINE L1 2 1560 -6052 267 93 0 0 chr9 23575410 23575453 -94287174 + (CCA)n Simple_repeat Simple_repeat 1 43 0 18903 192 35 18 chr9 23575453 23579106 -94283521 + L1PA11 LINE L1 1560 6193 -1419 354 23 0 0 chr9 23579106 23579149 -94283478 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 18903 192 35 18 chr9 23579149 23580593 -94282034 + L1PA11 LINE L1 6193 7612 0 2725 104 17 0 chr9 23580595 23581016 -94281611 - L1PA10 LINE L1 -86 6082 5655 348 329 53 0 chr9 23581088 23581240 -94281387 - L1ME4a LINE L1 -413 5708 5549 2160 137 0 0 chr9 23581424 23581717 -94280910 + AluSx SINE Alu 3 295 -17 2467 66 0 10 chr9 23581964 23582267 -94280360 + AluY SINE Alu 1 300 -11 12377 198 24 15 chr9 23582704 23586344 -94276283 - L1PA13 LINE L1 -3 6811 3156 560 93 35 0 chr9 23586350 23586436 -94276191 - L1PA13 LINE L1 -4509 2278 2190 2028 150 37 8 chr9 23586447 23586801 -94275826 + THE1B LTR MaLR 1 364 0 9964 114 21 53 chr9 23586801 23588434 -94274193 + THE1B-int LTR MaLR 1 1580 0 2077 155 29 0 chr9 23588434 23588783 -94273844 + THE1B LTR MaLR 1 359 -5 7114 216 87 6 chr9 23588788 23590434 -94272193 - L1PA13 LINE L1 -4604 2183 405 601 278 17 0 chr9 23591737 23591917 -94270710 - L1MC4 LINE L1 -1220 6822 6640 582 255 129 43 chr9 23591912 23592733 -94269894 - L1MC4 LINE L1 -1193 6615 5800 * 279 93 0 0 chr9 23592764 23592807 -94269820 + (GA)n Simple_repeat Simple_repeat 2 44 0 250 181 42 14 chr9 23594127 23594199 -94268428 - L1MA7 LINE L1 0 6291 6218 896 246 96 20 chr9 23594226 23594666 -94267961 - Charlie4a DNA MER1_type -35 473 1 30 77 0 0 chr9 23594863 23594928 -94267699 + AT_rich Low_complexity Low_complexity 1 65 0 528 322 7 46 chr9 23595054 23595337 -94267290 - L1MEd LINE L1 -5446 673 402 378 318 31 49 chr9 23595410 23595633 -94266994 - L1MEd LINE L1 -5888 231 13 359 306 33 66 chr9 23595661 23595844 -94266783 - MIR SINE MIR -66 196 20 292 363 8 8 chr9 23595906 23596030 -94266597 + L2 LINE L2 3190 3313 0 216 341 0 49 chr9 23599174 23599256 -94263371 - L2 LINE L2 0 3313 3236 2445 74 3 0 chr9 23599265 23599563 -94263064 + AluY SINE Alu 1 299 -12 883 288 0 5 chr9 23600379 23600584 -94262043 - MIR SINE MIR -57 205 2 494 233 182 17 chr9 23600716 23600892 -94261735 - MIR SINE MIR -57 205 1 26 0 0 0 chr9 23601096 23601122 -94261505 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 23602244 23602267 -94260360 + AT_rich Low_complexity Low_complexity 1 23 0 588 223 14 7 chr9 23602272 23602420 -94260207 - MER113 DNA MER1_type? -27 494 346 24 85 0 0 chr9 23602539 23602598 -94260029 + AT_rich Low_complexity Low_complexity 1 59 0 512 228 256 5 chr9 23602748 23602963 -94259664 + MER5C DNA MER1_type 1 269 -55 306 369 8 0 chr9 23603120 23603242 -94259385 + L2 LINE L2 3190 3312 -1 303 305 17 8 chr9 23603512 23603630 -94258997 - MLT1I LTR MaLR -10 399 281 509 282 15 68 chr9 23603677 23603883 -94258744 - MLT1I LTR MaLR -214 195 1 282 29 0 0 chr9 23604430 23604465 -94258162 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 773 321 73 45 chr9 23605565 23605923 -94256704 + L2 LINE L2 2902 3269 -44 6747 210 13 10 chr9 23605963 23607384 -94255243 + L1M1 LINE L1 9 1434 -6131 4592 110 47 22 chr9 23607387 23608157 -94254470 + L1MA2 LINE L1 5516 6304 0 211 209 0 0 chr9 23608166 23608209 -94254418 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 23 68 0 0 chr9 23609751 23609795 -94252832 + AT_rich Low_complexity Low_complexity 1 44 0 41515 45 2 1 chr9 23609795 23615942 -94246685 - L1PA4 LINE L1 -3 6152 1 29 47 0 0 chr9 23616002 23616045 -94246582 + AT_rich Low_complexity Low_complexity 1 43 0 190 403 0 14 chr9 23616085 23616157 -94246470 - L2 LINE L2 -53 3219 3149 299 308 51 40 chr9 23616163 23616669 -94245958 - L1MEd LINE L1 -3219 2910 2399 788 227 26 16 chr9 23616670 23616864 -94245763 + MLT1F1 LTR MaLR 372 567 0 244 270 67 34 chr9 23616877 23617055 -94245572 - L1MEd LINE L1 -4969 1150 967 258 315 55 50 chr9 23617211 23617411 -94245216 - L1MEd LINE L1 -5492 627 427 327 94 62 0 chr9 23617594 23617690 -94244937 + (TA)n Simple_repeat Simple_repeat 2 103 0 25 0 0 0 chr9 23617694 23617719 -94244908 + AT_rich Low_complexity Low_complexity 1 25 0 382 226 118 0 chr9 23618384 23618486 -94244141 + L1PA11 LINE L1 1 114 -7467 1561 273 115 48 chr9 23618487 23618902 -94243725 + L1PA11 LINE L1 322 708 -6873 222 91 0 0 chr9 23618902 23618935 -94243692 + (TTG)n Simple_repeat Simple_repeat 3 35 0 1810 93 4 8 chr9 23618935 23619187 -94243440 - AluY SINE Alu -50 261 11 2168 101 3 13 chr9 23619191 23619363 -94243264 - AluSg SINE Alu -7 303 134 2273 102 7 0 chr9 23619363 23619656 -94242971 - AluSx SINE Alu -17 295 1 2168 101 3 13 chr9 23619656 23619789 -94242838 - AluSg SINE Alu -176 134 1 1561 273 115 48 chr9 23619789 23620138 -94242489 + L1PA11 LINE L1 710 1138 -6443 625 146 114 0 chr9 23620119 23620242 -94242385 + L1PA11 LINE L1 3199 3335 -4249 * 1962 85 5 170 chr9 23620242 23620654 -94241973 - LTR14B LTR ERVK 0 608 1 17605 153 11 26 chr9 23620658 23624466 -94238161 + L1PA11 LINE L1 3332 7081 -531 367 0 22 0 chr9 23624425 23624471 -94238156 - L1PA8A LINE L1 -469 5662 5616 * 3605 110 34 2 chr9 23624519 23625080 -94237547 + L1PA11 LINE L1 7048 7625 0 441 311 32 47 chr9 23625101 23625378 -94237249 + L1M4 LINE L1 4387 4659 -1487 324 252 178 9 chr9 23625586 23625693 -94236934 - L2 LINE L2 -1 3312 3188 387 245 66 0 chr9 23625910 23626016 -94236611 - MER5C DNA MER1_type -211 113 1 253 241 36 12 chr9 23627728 23627811 -94234816 + T-rich Low_complexity Low_complexity 4 88 0 288 0 0 0 chr9 23628583 23628615 -94234012 + (T)n Simple_repeat Simple_repeat 1 32 0 276 323 85 0 chr9 23629179 23629309 -94233318 + MIR SINE MIR 112 252 -10 199 326 61 45 chr9 23629601 23629733 -94232894 + L3 LINE CR1 1414 1547 -30 439 319 113 51 chr9 23629784 23630227 -94232400 + L2 LINE L2 2812 3291 -22 205 296 97 61 chr9 23631392 23631588 -94231039 + L2 LINE L2 3084 3286 -27 189 107 0 0 chr9 23632494 23632522 -94230105 + (TG)n Simple_repeat Simple_repeat 2 29 0 829 169 87 49 chr9 23632805 23632988 -94229639 + MIR SINE MIR 67 256 -6 189 214 0 0 chr9 23632992 23633034 -94229593 + CT-rich Low_complexity Low_complexity 3 44 0 655 219 20 7 chr9 23633568 23633714 -94228913 - MIR SINE MIR -16 246 99 261 263 79 0 chr9 23633977 23634053 -94228574 + L2 LINE L2 3186 3267 -5 180 0 0 0 chr9 23634419 23634439 -94228188 + (T)n Simple_repeat Simple_repeat 1 20 0 214 205 0 0 chr9 23634753 23634792 -94227835 + T-rich Low_complexity Low_complexity 1 39 0 392 237 122 0 chr9 23635746 23635885 -94226742 - MER103 DNA DNA -2 164 9 580 270 75 6 chr9 23636329 23636503 -94226124 + MIR SINE MIR 41 226 -36 259 392 64 0 chr9 23636762 23636887 -94225740 - L2 LINE L2 -14 3258 3126 8492 191 39 11 chr9 23637040 23639767 -94222860 - L1PA16 LINE L1 -8 6861 4212 2448 153 24 14 chr9 23639767 23640191 -94222436 - MSTA LTR MaLR 0 428 1 9217 173 20 2 chr9 23640191 23641813 -94220814 - MSTA-int LTR MaLR 0 1651 1 2541 163 9 0 chr9 23641813 23642237 -94220390 - MSTA LTR MaLR 0 428 1 8492 191 39 11 chr9 23642237 23642330 -94220297 - L1PA16 LINE L1 -2656 4213 3959 551 77 0 0 chr9 23642688 23642766 -94219861 + L1PA7 LINE L1 6074 6151 -3 1899 261 38 5 chr9 23643687 23644293 -94218334 - L1 LINE L1 -2889 3257 2632 * 13243 149 16 151 chr9 23644288 23647805 -94214822 - L1PA16 LINE L1 -3660 3189 143 795 185 49 0 chr9 23648066 23648250 -94214377 - L1MB3 LINE L1 -1 6182 5990 2029 255 60 0 chr9 23648251 23648714 -94213913 + L1PA13 LINE L1 436 926 -5861 890 171 67 0 chr9 23648714 23648878 -94213749 + MSTB LTR MaLR 250 424 -2 8812 182 22 4 chr9 23648879 23650499 -94212128 + MSTA-int LTR MaLR 2 1651 0 1993 166 79 22 chr9 23650499 23650902 -94211725 + MSTA LTR MaLR 1 426 -2 9802 230 57 37 chr9 23650909 23653197 -94209430 - L1 LINE L1 -1008 5840 3733 3166 192 35 1 chr9 23653197 23653884 -94208743 - L1MA4 LINE L1 -1 6299 5590 9802 230 57 37 chr9 23653884 23656229 -94206398 - L1 LINE L1 -3115 3733 1436 473 264 26 26 chr9 23657128 23657283 -94205344 - L2 LINE L2 0 3313 3159 541 302 63 36 chr9 23657822 23658044 -94204583 + LTR16C LTR ERVL 179 406 -85 430 247 21 59 chr9 23658387 23658573 -94204054 - L1MC5 LINE L1 -741 7220 7042 264 306 8 33 chr9 23658632 23658753 -94203874 + CT-rich Low_complexity Low_complexity 3 120 0 501 291 70 57 chr9 23658758 23658896 -94203731 - L1MC4 LINE L1 -891 6917 6782 1691 216 14 3 chr9 23658896 23659257 -94203370 + MLT1A1 LTR MaLR 1 365 0 501 291 70 57 chr9 23659257 23659516 -94203111 - L1MC4 LINE L1 -1026 6782 6554 21 57 0 0 chr9 23659526 23659561 -94203066 + AT_rich Low_complexity Low_complexity 1 35 0 326 320 141 51 chr9 23659580 23659992 -94202635 - L1MC4a LINE L1 -1386 6422 5974 440 14 58 0 chr9 23660027 23660096 -94202531 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 241 226 65 0 chr9 23660112 23660174 -94202453 - L1MC4a LINE L1 -1869 5939 5874 427 257 224 6 chr9 23660175 23660358 -94202269 - L1MC4a LINE L1 -1993 5815 5593 1859 194 12 9 chr9 23660365 23660711 -94201916 - MLT1A1 LTR MaLR 0 365 19 892 268 31 7 chr9 23660743 23661030 -94201597 - L1MC4a LINE L1 -2219 5589 5296 374 226 0 81 chr9 23661038 23661162 -94201465 - L1ME1 LINE L1 -5 6161 6048 595 302 99 62 chr9 23661172 23661229 -94201398 - L1MC4a LINE L1 -839 5307 5254 1938 142 139 21 chr9 23661229 23661610 -94201017 + MSTA LTR MaLR 1 426 -2 595 302 99 62 chr9 23661610 23661640 -94200987 - L1MC4a LINE L1 -892 5254 5227 1949 123 18 7 chr9 23661640 23661925 -94200702 - AluY SINE Alu 0 311 24 595 302 99 62 chr9 23661925 23662340 -94200287 - L1MC4a LINE L1 -919 5227 4785 22 35 0 0 chr9 23662346 23662375 -94200252 + AT_rich Low_complexity Low_complexity 1 29 0 458 274 123 25 chr9 23662911 23662996 -94199631 - MER2 DNA MER2_type -1 344 269 1802 194 11 5 chr9 23662996 23663367 -94199260 + L1PA16 LINE L1 5794 6166 0 458 274 123 25 chr9 23663367 23663485 -94199142 - MER2 DNA MER2_type -76 269 121 6701 200 81 40 chr9 23663489 23665032 -94197595 + L1M1 LINE L1 15 1621 -5944 1175 243 71 4 chr9 23665053 23665333 -94197294 - AluJb SINE Alu -3 299 1 586 298 108 48 chr9 23665428 23666097 -94196530 - L1MC4a LINE L1 -3316 2830 2122 473 318 35 20 chr9 23666555 23666753 -94195874 + MIR SINE MIR 13 213 -49 342 321 111 12 chr9 23666910 23667179 -94195448 - L2 LINE L2 -328 2985 2687 346 350 65 32 chr9 23667209 23667486 -94195141 - L2 LINE L2 -795 2519 2234 24 0 0 0 chr9 23719620 23719644 -94142983 + AT_rich Low_complexity Low_complexity 1 24 0 242 302 79 36 chr9 23720106 23720245 -94142382 - MIR SINE MIR -10 252 108 378 307 150 29 chr9 23720939 23721086 -94141541 + L1M4 LINE L1 4698 4826 -1320 438 20 0 0 chr9 23721086 23721137 -94141490 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 307 150 29 chr9 23721137 23721468 -94141159 + L1M4 LINE L1 4826 5234 -912 24 53 0 0 chr9 23721554 23721592 -94141035 + AT_rich Low_complexity Low_complexity 1 38 0 2005 94 71 10 chr9 23721751 23722059 -94140568 - L1PA4 LINE L1 -3 6152 5826 1421 72 2 13 chr9 23722059 23722269 -94140358 + L1PA4 LINE L1 5691 5862 -293 1223 292 70 19 chr9 23722269 23722782 -94139845 - ERVL-C1 LTR ERVL -5225 539 1 1084 269 6 55 chr9 23722782 23723147 -94139480 - MLT2C1 LTR ERVL 0 397 51 648 168 77 28 chr9 23724220 23724363 -94138264 + MLT1B LTR MaLR 3 152 -238 1565 194 47 10 chr9 23724367 23724724 -94137903 - AluJb SINE Alu 0 370 3 897 220 12 75 chr9 23724725 23724980 -94137647 + MLT1B LTR MaLR 152 390 0 1178 253 25 52 chr9 23725366 23725774 -94136853 + MLT2C1 LTR ERVL 1 397 0 1223 292 70 19 chr9 23725774 23726287 -94136340 + ERVL-C1 LTR ERVL 1 539 -5225 1812 56 3 2 chr9 23726287 23726529 -94136098 - L1PA4 LINE L1 -292 5863 5655 * 2412 77 15 3 chr9 23726493 23726819 -94135808 + L1PA4 LINE L1 5826 6155 0 490 307 7 0 chr9 23726819 23726956 -94135671 + ERVL-C1 LTR ERVL 563 700 -5064 970 256 12 8 chr9 23727058 23727308 -94135319 - MLT1D LTR MaLR -5 500 250 573 150 9 62 chr9 23727408 23727521 -94135106 - MLT1D LTR MaLR -398 107 1 817 223 93 40 chr9 23727667 23728026 -94134601 - L1ME3A LINE L1 -13 6151 5768 730 263 62 0 chr9 23728035 23728229 -94134398 - MER58A DNA MER1_type 0 224 19 483 255 166 0 chr9 23728239 23728396 -94134231 - L1ME3A LINE L1 -424 5746 5564 328 120 0 0 chr9 23728457 23728507 -94134120 + MADE1 DNA Mariner 1 50 -30 23 0 0 0 chr9 23729600 23729623 -94133004 + AT_rich Low_complexity Low_complexity 1 23 0 216 336 9 82 chr9 23731067 23731177 -94131450 - MIR3 SINE MIR 0 208 107 3301 42 2 0 chr9 23732222 23732624 -94130003 - L1PA6 LINE L1 -5 6149 5747 240 308 67 0 chr9 23732831 23732935 -94129692 - HAL1b LINE L1 -685 663 553 6780 65 8 4 chr9 23733153 23734679 -94127948 - L1PA7 LINE L1 -13 6141 4612 201 175 0 0 chr9 23736077 23736117 -94126510 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 198 313 41 95 chr9 23736383 23736530 -94126097 + MIR SINE MIR 47 185 -77 480 315 27 12 chr9 23737907 23738094 -94124533 + MLT1H LTR MaLR 23 198 -351 183 167 0 0 chr9 23738184 23738226 -94124401 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 348 274 74 47 chr9 23738514 23738704 -94123923 - L2 LINE L2 -4 3309 3115 811 339 31 45 chr9 23739033 23739486 -94123141 - L2 LINE L2 -246 3026 2574 317 241 37 37 chr9 23739550 23739658 -94122969 - MLT1H LTR MaLR -10 539 432 1216 151 18 49 chr9 23739833 23740058 -94122569 - AluJo SINE Alu -21 291 74 22 35 0 0 chr9 23740062 23740091 -94122536 + AT_rich Low_complexity Low_complexity 1 29 0 264 365 52 17 chr9 23740245 23740360 -94122267 - L2 LINE L2 -20 3252 3134 24 0 0 0 chr9 23741423 23741447 -94121180 + AT_rich Low_complexity Low_complexity 1 24 0 568 342 141 18 chr9 23741809 23742417 -94120210 + L2 LINE L2 1882 2564 -750 291 217 36 24 chr9 23742956 23743039 -94119588 - L1ME LINE L1 -526 5595 5512 6324 34 22 0 chr9 23743040 23743804 -94118823 + L1PA4 LINE L1 5372 6152 -3 259 338 66 5 chr9 23743822 23744020 -94118607 - L1ME LINE L1 -2282 5526 5317 378 307 150 29 chr9 23744087 23744418 -94118209 - L1ME LINE L1 -912 5234 4826 438 20 0 0 chr9 23744418 23744469 -94118158 + (CA)n Simple_repeat Simple_repeat 2 52 0 378 307 150 29 chr9 23744469 23744616 -94118011 - L1ME LINE L1 -1320 4826 4698 242 302 79 36 chr9 23745310 23745449 -94117178 + MIR SINE MIR 108 252 -10 24 0 0 0 chr9 23745911 23745935 -94116692 + AT_rich Low_complexity Low_complexity 1 24 0 360 274 53 26 chr9 23747804 23747917 -94114710 - L2 LINE L2 -20 3293 3178 233 304 72 0 chr9 23748524 23748593 -94114034 + L2 LINE L2 3189 3262 -10 1823 151 19 29 chr9 23748719 23749031 -94113596 + AluSx SINE Alu 3 311 -1 297 366 0 52 chr9 23749108 23749242 -94113385 - L2 LINE L2 -179 3093 2967 691 220 33 7 chr9 23749256 23749406 -94113221 - MLT1G1 LTR MaLR 0 595 442 428 233 128 39 chr9 23749416 23749596 -94113031 - MLT1G1 LTR MaLR -244 286 91 347 401 75 22 chr9 23749869 23750518 -94112109 - L2 LINE L2 -582 2732 2049 2154 96 0 40 chr9 23751473 23751776 -94110851 - AluSg SINE Alu -19 291 1 348 297 109 30 chr9 23752018 23752220 -94110407 - MIR SINE MIR -44 218 1 449 228 0 39 chr9 23752261 23752388 -94110239 - L1MB8 LINE L1 -7 6171 6050 42647 33 21 2 chr9 23752557 23758587 -94104040 - L1PA2 LINE L1 -4 6151 5 201 324 26 8 chr9 23759094 23759239 -94103388 + MIR SINE MIR 77 249 -13 * 205 255 21 0 chr9 23759208 23759255 -94103372 + L2 LINE L2 3264 3311 -2 249 327 87 72 chr9 23759451 23759659 -94102968 + MIR SINE MIR 47 257 -5 294 298 101 36 chr9 23759856 23760024 -94102603 + MIR SINE MIR 84 262 0 540 354 91 31 chr9 23763085 23763705 -94098922 + L2 LINE L2 2616 3272 0 2077 118 3 0 chr9 23763747 23764036 -94098591 + AluSx SINE Alu 18 307 -5 656 308 39 5 chr9 23764202 23764410 -94098217 + MIR SINE MIR 14 228 -34 6517 144 108 93 chr9 23766085 23767755 -94094872 - pTR5 LTR ERV1 0 2438 743 200 299 172 23 chr9 23768177 23768264 -94094363 + MIR SINE MIR 63 162 -100 360 293 38 9 chr9 23768310 23768416 -94094211 - MIR SINE MIR -1 261 153 255 346 45 23 chr9 23768967 23769100 -94093527 + MIR SINE MIR 81 216 -46 214 322 217 0 chr9 23769705 23769820 -94092807 + L2 LINE L2 3133 3272 0 411 294 147 28 chr9 23769831 23770042 -94092585 + MIR SINE MIR 8 243 -19 1078 154 11 0 chr9 23770331 23770519 -94092108 + L1PB1 LINE L1 3 192 -6671 13815 160 47 22 chr9 23770526 23771016 -94091611 + L1PB1 LINE L1 634 1111 -5756 2159 98 0 73 chr9 23771016 23771344 -94091283 - AluY SINE Alu -7 304 1 13815 160 47 22 chr9 23771344 23776372 -94086255 + L1PB1 LINE L1 1111 6309 -558 2221 108 0 3 chr9 23776372 23776667 -94085960 + AluY SINE Alu 1 294 -17 13815 160 47 22 chr9 23776667 23777053 -94085574 + L1PB1 LINE L1 6309 6684 -183 278 116 23 23 chr9 23777060 23777146 -94085481 + (TA)n Simple_repeat Simple_repeat 1 86 0 370 318 23 81 chr9 23778254 23778512 -94084115 + MIR SINE MIR 14 256 -6 198 268 144 31 chr9 23778662 23778759 -94083868 - MIR SINE MIR -63 145 38 1441 213 24 71 chr9 23779039 23779448 -94083179 - MLT1B LTR MaLR 0 390 1 924 180 47 43 chr9 23779828 23780039 -94082588 - MER20 DNA MER1_type -3 216 5 696 302 117 11 chr9 23780074 23780432 -94082195 + MLT1L LTR MaLR 220 615 0 207 338 75 25 chr9 23780795 23780955 -94081672 + L2 LINE L2 1934 2101 -1213 195 191 95 48 chr9 23781074 23781158 -94081469 + MIR SINE MIR 117 204 -58 275 293 71 30 chr9 23781976 23782075 -94080552 + MIR SINE MIR 64 166 -96 1781 180 0 10 chr9 23784176 23784481 -94078146 + AluJb SINE Alu 1 302 -10 188 349 198 0 chr9 23785636 23785742 -94076885 - L3 LINE CR1 -16 1561 1435 296 333 0 0 chr9 23785937 23786018 -94076609 - MIR3 SINE MIR -20 188 108 775 210 0 107 chr9 23786204 23786437 -94076190 + MER3 DNA MER1_type 2 209 0 227 295 49 0 chr9 23786579 23786640 -94075987 - MIR SINE MIR -107 101 38 2316 137 54 10 chr9 23786859 23787267 -94075360 + L1PA15 LINE L1 5721 6146 -19 315 62 0 0 chr9 23787306 23787354 -94075273 + L1PA15 LINE L1 6112 6159 -6 263 315 14 0 chr9 23788733 23788806 -94073821 + GA-rich Low_complexity Low_complexity 3 76 0 353 302 139 45 chr9 23788810 23789349 -94073278 + L1M4 LINE L1 4802 5391 -755 756 89 0 0 chr9 23789507 23789636 -94072991 + AluY SINE Alu 181 309 0 219 292 45 34 chr9 23789669 23789758 -94072869 + L2 LINE L2 3136 3225 -47 232 279 135 18 chr9 23789990 23790101 -94072526 + MIR SINE MIR 98 221 -41 290 250 132 35 chr9 23791768 23791912 -94070715 - L2 LINE L2 -925 2389 2232 200 280 151 11 chr9 23792123 23792216 -94070411 + MER5B DNA MER1_type 1 106 -72 195 278 0 19 chr9 23792228 23792282 -94070345 + MER5A DNA MER1_type 136 188 -1 418 242 178 13 chr9 23794160 23794317 -94068310 + MIR SINE MIR 48 230 -32 403 233 48 0 chr9 23794538 23794641 -94067986 - MIR SINE MIR -102 160 53 350 174 29 0 chr9 23795338 23795407 -94067220 + MIR SINE MIR 70 140 -122 244 237 31 103 chr9 23795613 23795710 -94066917 - MIR3 SINE MIR -104 104 15 2187 121 0 6 chr9 23797053 23797366 -94065261 + AluSx SINE Alu 1 311 -1 862 255 22 0 chr9 23797983 23798167 -94064460 + MER5A DNA MER1_type 2 189 0 2505 38 3 35 chr9 23798929 23799242 -94063385 - AluY SINE Alu -8 303 1 479 258 81 53 chr9 23799671 23799846 -94062781 - MIR SINE MIR -34 228 45 2017 141 39 30 chr9 23799846 23800207 -94062420 - THE1B LTR MaLR 0 364 1 479 258 81 53 chr9 23800207 23800240 -94062387 - MIR SINE MIR -217 45 14 341 241 48 60 chr9 23800245 23800411 -94062216 - MER20B DNA MER1_type 0 783 620 1097 220 59 43 chr9 23800411 23800734 -94061893 + L1ME2 LINE L1 5826 6153 -11 1165 283 86 14 chr9 23800928 23801416 -94061211 - MER20B DNA MER1_type -238 545 23 21 36 0 0 chr9 23801778 23801806 -94060821 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr9 23802552 23802591 -94060036 + AT_rich Low_complexity Low_complexity 1 39 0 1147 246 40 63 chr9 23803256 23803613 -94059014 - L1MEc LINE L1 -5932 464 116 1969 149 3 0 chr9 23803613 23803923 -94058704 - AluSx SINE Alu 0 313 3 1147 246 40 63 chr9 23803923 23803994 -94058633 - L1MEc LINE L1 -6280 116 45 1497 265 135 15 chr9 23804097 23804637 -94057990 - MLT1E2 LTR MaLR 0 626 22 183 316 0 86 chr9 23805068 23805185 -94057442 + L2 LINE L2 2960 3066 -206 234 367 0 13 chr9 23805397 23805476 -94057151 + MER5A DNA MER1_type 68 145 -44 235 308 0 0 chr9 23806258 23806310 -94056317 - L2 LINE L2 -88 3184 3133 515 295 112 19 chr9 23806412 23806437 -94056190 + L1ME1 LINE L1 3224 3245 -2901 1772 154 3 25 chr9 23806437 23806723 -94055904 + AluJo SINE Alu 1 280 -32 203 79 26 0 chr9 23806725 23806763 -94055864 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 515 295 112 19 chr9 23806763 23806977 -94055650 + L1ME1 LINE L1 3245 3438 -2708 495 0 0 0 chr9 23806977 23807032 -94055595 + (TA)n Simple_repeat Simple_repeat 2 56 0 515 295 112 19 chr9 23807032 23807164 -94055463 + L1ME1 LINE L1 3438 3634 -2512 3284 258 80 20 chr9 23807188 23808976 -94053651 + L1ME1 LINE L1 3708 5594 -572 718 167 48 12 chr9 23808966 23809134 -94053493 - L1PA15-16 LINE L1 -4577 2272 2099 * 991 266 14 3 chr9 23809133 23809423 -94053204 + L1ME1 LINE L1 5597 5889 -277 983 343 34 38 chr9 23809435 23810047 -94052580 + L1PA16 LINE L1 788 1397 -6177 406 266 53 0 chr9 23810168 23810262 -94052365 + L1PA16 LINE L1 2083 2181 -5400 11020 221 27 61 chr9 23810474 23812005 -94050622 + L1PA16 LINE L1 2183 3765 -3819 2325 98 3 0 chr9 23812005 23812312 -94050315 + AluSq SINE Alu 3 310 -3 11020 221 27 61 chr9 23812312 23813642 -94048985 + L1PA16 LINE L1 3765 5139 -2445 450 0 0 0 chr9 23813642 23813692 -94048935 + (CA)n Simple_repeat Simple_repeat 2 51 0 11020 221 27 61 chr9 23813692 23814684 -94047943 + L1PA16 LINE L1 5139 6163 -1421 542 55 0 0 chr9 23814684 23814757 -94047870 - AluY SINE Alu -13 297 225 1239 56 25 6 chr9 23814757 23814917 -94047710 - AluY SINE Alu -148 163 1 11020 221 27 61 chr9 23814917 23815262 -94047365 + L1PA16 LINE L1 6161 6453 -1131 1506 179 22 8 chr9 23815272 23815540 -94047087 + AluJo SINE Alu 11 282 -30 204 40 0 0 chr9 23815545 23815570 -94047057 + (TA)n Simple_repeat Simple_repeat 1 25 0 316 196 0 72 chr9 23815575 23815672 -94046955 + L1MC4 LINE L1 6614 6703 -1339 5141 148 27 1 chr9 23815684 23816811 -94045816 + L1PA16 LINE L1 6443 7595 -9 234 0 0 0 chr9 23816814 23816840 -94045787 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 810 206 17 127 chr9 23816846 23817137 -94045490 + L1ME1 LINE L1 5878 6136 -30 2182 89 4 0 chr9 23817262 23817542 -94045085 + AluSp SINE Alu 1 281 -32 949 78 7 7 chr9 23817545 23817686 -94044941 + (GAA)n Simple_repeat Simple_repeat 2 142 0 221 290 65 47 chr9 23818414 23818521 -94044106 - L2 LINE L2 -8 3305 3197 307 196 0 0 chr9 23819320 23819371 -94043256 - L2 LINE L2 -1 3312 3262 259 297 127 8 chr9 23821025 23821143 -94041484 + MIR SINE MIR 82 213 -49 375 327 41 8 chr9 23821971 23822128 -94040499 - MIR SINE MIR -62 146 39 207 0 0 0 chr9 23822711 23822734 -94039893 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1284 152 0 0 chr9 23822754 23822945 -94039682 - AluJo SINE Alu -121 191 1 267 339 61 26 chr9 23823133 23823248 -94039379 - L2 LINE L2 0 3272 3154 299 242 10 30 chr9 23823766 23823865 -94038762 - L1MEc LINE L1 -6260 136 40 9346 180 94 48 chr9 23823945 23825737 -94036890 - L1MCa LINE L1 -3947 2479 771 234 0 0 0 chr9 23825737 23825763 -94036864 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1944 147 3 0 chr9 23825765 23826051 -94036576 - AluSq SINE Alu -26 287 1 9346 180 94 48 chr9 23826051 23826748 -94035879 - L1MCa LINE L1 -5655 771 3 2312 168 70 2 chr9 23826808 23827207 -94035420 + MSTB LTR MaLR 1 426 0 290 317 172 17 chr9 23827309 23827489 -94035138 - MIR SINE MIR -19 243 36 28 0 0 0 chr9 23828029 23828057 -94034570 + AT_rich Low_complexity Low_complexity 1 28 0 203 286 20 0 chr9 23828778 23828827 -94033800 + L2 LINE L2 3251 3300 -13 22 35 0 0 chr9 23829215 23829244 -94033383 + AT_rich Low_complexity Low_complexity 1 29 0 918 276 86 20 chr9 23829420 23829771 -94032856 + LTR16B LTR ERVL 88 461 -3 362 310 107 42 chr9 23830185 23830540 -94032087 - L2 LINE L2 -1210 2104 1727 224 223 33 10 chr9 23831724 23831796 -94030831 - MIR SINE MIR -65 143 73 294 91 15 30 chr9 23832352 23832418 -94030209 + (TA)n Simple_repeat Simple_repeat 2 66 0 432 259 23 15 chr9 23834131 23834262 -94028365 + MIR SINE MIR 111 242 -20 341 322 68 17 chr9 23835156 23835448 -94027179 + L1ME4a LINE L1 5548 5854 -267 1949 252 40 1 chr9 23836750 23837407 -94025220 - L1ME LINE L1 -367 5799 5122 885 195 96 44 chr9 23837425 23837697 -94024930 + pTR5 LTR ERV1 743 1028 -1410 4639 79 48 154 chr9 23837776 23838700 -94023927 + LTR12 LTR ERV1 1 826 0 36177 91 7 24 chr9 23838700 23844165 -94018462 + HERV9 LTR ERV1 1 4978 -3421 3080 113 15 12 chr9 23844175 23844867 -94017760 + HERV9 LTR ERV1 504 8399 0 3785 82 300 3 chr9 23844955 23845592 -94017035 + LTR12 LTR ERV1 1 826 0 3560 232 54 26 chr9 23845601 23846756 -94015871 - L1ME LINE L1 -1034 5112 3926 2873 249 107 8 chr9 23846771 23848010 -94014617 - L1ME LINE L1 -2462 3684 2324 232 138 46 15 chr9 23848026 23848091 -94014536 - L1M4 LINE L1 -1768 4378 4312 352 358 30 0 chr9 23848106 23848240 -94014387 - MIR3 SINE MIR -6 202 65 382 168 168 21 chr9 23848657 23848752 -94013875 - MIR SINE MIR -66 196 88 686 266 100 3 chr9 23848838 23849207 -94013420 + MER113 DNA MER1_type? 74 478 -43 188 330 50 40 chr9 23849385 23849485 -94013142 + MER5B DNA MER1_type 77 177 -1 195 100 0 0 chr9 23850967 23850997 -94011630 + (CCG)n Simple_repeat Simple_repeat 2 31 0 395 257 81 113 chr9 23851009 23851390 -94011237 - L1M2 LINE L1 -5707 1142 774 601 143 0 10 chr9 23851850 23851948 -94010679 - AluJb SINE Alu -26 286 190 269 277 0 0 chr9 23856989 23857054 -94005573 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 24 67 0 0 chr9 23857757 23857802 -94004825 + AT_rich Low_complexity Low_complexity 1 45 0 320 265 46 53 chr9 23858118 23858269 -94004358 - L2 LINE L2 0 3313 3164 342 291 101 25 chr9 23858400 23858558 -94004069 + L3 LINE CR1 1254 1423 -154 282 308 67 0 chr9 23859040 23859144 -94003483 + MIR SINE MIR 78 188 -74 1383 290 117 17 chr9 23859498 23860036 -94002591 - MLT2E LTR ERVL -18 610 19 4834 276 44 13 chr9 23860407 23862017 -94000610 - ERVL LTR ERVL -401 5363 3629 4746 317 47 30 chr9 23862133 23864200 -93998427 - ERVL LTR ERVL -2275 3489 1386 1286 269 101 6 chr9 23864332 23864670 -93997957 - MLT2E LTR ERVL -249 379 10 702 201 40 0 chr9 23864847 23864996 -93997631 - L1MD2 LINE L1 -18 6341 6187 802 280 54 51 chr9 23865059 23865373 -93997254 - L2 LINE L2 -609 2705 2391 421 282 85 16 chr9 23865609 23866045 -93996582 + L1M4 LINE L1 2922 3387 -2759 24 91 0 0 chr9 23866438 23866504 -93996123 + AT_rich Low_complexity Low_complexity 1 66 0 360 111 0 0 chr9 23866646 23866700 -93995927 + (TG)n Simple_repeat Simple_repeat 1 54 0 284 276 47 63 chr9 23866705 23866832 -93995795 - MIR SINE MIR -117 145 21 613 248 35 45 chr9 23867050 23867252 -93995375 + MER63A DNA MER1_type 1 200 -10 292 263 26 0 chr9 23867274 23867350 -93995277 - MLT1L LTR MaLR -332 283 206 361 237 146 56 chr9 23867483 23867753 -93994874 + L1M4 LINE L1 4022 4334 -1812 480 132 40 0 chr9 23867768 23867920 -93994707 + (TA)n Simple_repeat Simple_repeat 1 158 0 25 31 0 0 chr9 23867932 23867964 -93994663 + AT_rich Low_complexity Low_complexity 1 32 0 407 281 30 115 chr9 23867995 23868265 -93994362 + L1M4 LINE L1 4330 4576 -1570 623 304 0 39 chr9 23868296 23868500 -93994127 + MIR SINE MIR 36 231 -31 927 285 102 55 chr9 23868874 23869179 -93993448 - L2 LINE L2 0 3313 3024 1705 145 75 34 chr9 23869179 23869537 -93993090 + THE1C LTR MaLR 3 375 0 927 285 102 55 chr9 23869537 23870044 -93992583 - L2 LINE L2 -289 3024 2458 1434 193 19 4 chr9 23870077 23870346 -93992281 + AluJb SINE Alu 20 292 -20 2099 293 140 19 chr9 23870417 23871427 -93991200 - L2 LINE L2 -962 2352 1221 392 329 82 12 chr9 23871480 23871650 -93990977 - LTR33 LTR ERVL -339 182 1 22 56 0 0 chr9 23871797 23871833 -93990794 + AT_rich Low_complexity Low_complexity 1 36 0 2055 105 54 3 chr9 23872231 23872525 -93990102 + AluSc SINE Alu 1 309 0 21 0 0 0 chr9 23873122 23873143 -93989484 + AT_rich Low_complexity Low_complexity 1 21 0 354 298 40 53 chr9 23873382 23873533 -93989094 + MIR SINE MIR 29 177 -85 351 307 84 22 chr9 23874021 23874200 -93988427 - MIR SINE MIR -25 237 48 243 215 0 0 chr9 23874323 23874388 -93988239 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 28 0 0 0 chr9 23874532 23874560 -93988067 + AT_rich Low_complexity Low_complexity 1 28 0 2316 91 7 0 chr9 23877050 23877346 -93985281 + AluSp SINE Alu 1 298 -15 1741 172 3 3 chr9 23877587 23877872 -93984755 - AluJo SINE Alu -23 289 5 384 327 59 45 chr9 23878100 23878302 -93984325 - MLT1I LTR MaLR -177 232 28 202 318 0 0 chr9 23878536 23878602 -93984025 + (ATG)n Simple_repeat Simple_repeat 3 68 0 226 335 171 24 chr9 23879240 23879404 -93983223 - MIR SINE MIR -49 213 26 7315 236 82 58 chr9 23879881 23882527 -93980100 - L1M4 LINE L1 -1197 5760 3179 1602 228 0 0 chr9 23882527 23882817 -93979810 - AluJb SINE Alu -19 293 4 7315 236 82 58 chr9 23882817 23883618 -93979009 - L1M4 LINE L1 -3778 3179 2199 207 0 0 0 chr9 23883618 23883641 -93978986 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7315 236 82 58 chr9 23883641 23884221 -93978406 - L1M4 LINE L1 -4758 2199 1634 813 181 7 0 chr9 23884222 23884383 -93978244 - AluJb SINE Alu 0 308 147 731 221 0 0 chr9 23884394 23884574 -93978053 - FLAM_C SINE Alu 0 182 3 2461 261 115 37 chr9 23884576 23885569 -93977058 - L1M4 LINE L1 -5202 1657 588 249 108 0 0 chr9 23885664 23885701 -93976926 + (CA)n Simple_repeat Simple_repeat 1 37 0 360 83 0 0 chr9 23886033 23886081 -93976546 - L1PA4 LINE L1 -251 5903 5856 2113 28 0 0 chr9 23886081 23886329 -93976298 + L1PA4 LINE L1 5903 6153 -2 180 111 0 0 chr9 23886639 23886666 -93975961 + (GA)n Simple_repeat Simple_repeat 1 27 0 987 139 0 13 chr9 23888423 23888574 -93974053 - MER50 LTR ERV1 -23 711 563 1844 24 0 0 chr9 23888574 23888785 -93973842 - L1P LINE L1 -1834 4312 4102 * 5590 47 0 0 chr9 23888784 23889484 -93973143 + L1P LINE L1 4314 5013 -1133 433 277 124 33 chr9 23889486 23889728 -93972899 - L2 LINE L2 -1 3312 3049 218 218 18 0 chr9 23891457 23891512 -93971115 + T-rich Low_complexity Low_complexity 2 57 0 6402 25 0 0 chr9 23891513 23892257 -93970370 - L1PA3 LINE L1 -3 6152 5409 322 323 124 21 chr9 23892644 23892830 -93969797 + MIR SINE MIR 2 206 -56 503 305 93 49 chr9 23892835 23893081 -93969546 - MIR SINE MIR -5 257 1 4258 223 30 15 chr9 23893461 23895057 -93967570 - L1PA13 LINE L1 -3817 2980 1326 16339 116 10 33 chr9 23895401 23898766 -93963861 - L1P3 LINE L1 -2765 3696 337 22 0 0 0 chr9 23898941 23898963 -93963664 + AT_rich Low_complexity Low_complexity 1 22 0 298 289 141 8 chr9 23899941 23900062 -93962565 + MIR SINE MIR 36 172 -90 1376 182 42 45 chr9 23900113 23900381 -93962246 - L1M3 LINE L1 -571 5600 5332 2016 164 37 8 chr9 23900381 23900760 -93961867 + MLT1B LTR MaLR 1 390 0 1376 182 42 45 chr9 23900760 23900878 -93961749 - L1M3 LINE L1 -839 5332 5215 1043 314 115 47 chr9 23902204 23902735 -93959892 - MLT1G1 LTR MaLR -24 571 5 230 319 26 26 chr9 23902738 23902851 -93959776 - MLT1G1-int LTR MaLR -11 1724 1612 1901 158 153 5 chr9 23902889 23903262 -93959365 + MSTA LTR MaLR 1 428 0 2181 132 24 16 chr9 23903449 23903821 -93958806 - THE1C LTR MaLR 0 375 1 424 250 0 61 chr9 23904418 23904550 -93958077 - MLT1G1-int LTR MaLR -793 578 455 338 313 17 0 chr9 23904719 23904834 -93957793 - MLT1G1-int LTR MaLR -1614 121 5 543 296 126 5 chr9 23904852 23905051 -93957576 - MLT1G1 LTR MaLR -15 580 358 23 0 0 0 chr9 23905185 23905208 -93957419 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 23905295 23905332 -93957295 + AT_rich Low_complexity Low_complexity 1 37 0 23543 33 0 0 chr9 23905332 23908959 -93953668 - L1PA4 LINE L1 -7 6148 2522 10748 51 0 2 chr9 23908959 23910331 -93952296 + L1PA4 LINE L1 1144 2512 -3634 3093 218 7 56 chr9 23910328 23911150 -93951477 - L1P LINE L1 -1155 4991 4210 * 2088 120 76 12 chr9 23911150 23911492 -93951135 + THE1B LTR MaLR 1 364 0 11367 106 4 6 chr9 23911492 23913075 -93949552 + THE1B-int LTR MaLR 1 1580 0 1005 127 100 0 chr9 23913078 23913228 -93949399 + THE1B LTR MaLR 4 168 -196 16379 146 7 13 chr9 23913236 23915533 -93947094 + L1PA10 LINE L1 2423 4734 -1434 225 65 0 0 chr9 23915533 23915564 -93947063 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 16379 146 7 13 chr9 23915564 23916200 -93946427 + L1PA10 LINE L1 4734 5373 -795 2021 140 0 16 chr9 23916200 23916515 -93946112 + AluSg SINE Alu 1 310 0 16379 146 7 13 chr9 23916515 23917277 -93945350 + L1PA10 LINE L1 5373 6159 -9 3142 261 14 14 chr9 23917282 23918122 -93944505 - L1PA13 LINE L1 -2792 4005 3163 2269 97 0 13 chr9 23918122 23918433 -93944194 + AluY SINE Alu 1 307 -4 3142 261 14 14 chr9 23918433 23918562 -93944065 - L1PA13 LINE L1 -3633 3164 3036 2669 268 53 40 chr9 23918674 23919450 -93943177 - L1PA13 LINE L1 -6001 786 1 229 333 67 0 chr9 23919660 23919765 -93942862 + MIR SINE MIR 15 126 -136 21 0 0 0 chr9 23920267 23920288 -93942339 + AT_rich Low_complexity Low_complexity 1 21 0 320 309 82 82 chr9 23920331 23920635 -93941992 + L2 LINE L2 2550 2853 -461 282 304 0 0 chr9 23920708 23920787 -93941840 + L2 LINE L2 2994 3072 -241 281 393 65 0 chr9 23920814 23920982 -93941645 - L2 LINE L2 -1723 1591 1413 2036 253 176 39 chr9 23921367 23922536 -93940091 - L1ME1 LINE L1 -18 6542 5204 536 101 13 0 chr9 23922546 23922625 -93940002 + MADE1 DNA Mariner 1 80 0 3591 270 80 68 chr9 23922627 23924444 -93938183 - L1ME1 LINE L1 -1610 4930 3083 2107 150 0 0 chr9 23924444 23924751 -93937876 - AluSx SINE Alu -5 307 1 3591 270 80 68 chr9 23924751 23925000 -93937627 - L1ME1 LINE L1 -3457 3083 2839 570 214 38 0 chr9 23925002 23925161 -93937466 - L1ME1 LINE L1 -4809 1731 1567 1096 249 60 68 chr9 23925179 23925801 -93936826 - L1ME1 LINE L1 -5017 1526 910 342 357 23 50 chr9 23926360 23926618 -93936009 - L1ME1 LINE L1 -6242 298 48 21 0 0 0 chr9 23926998 23927019 -93935608 + AT_rich Low_complexity Low_complexity 1 21 0 42315 52 4 2 chr9 23927502 23932850 -93929777 - L1P LINE L1 -783 5363 4 496 309 61 6 chr9 23932854 23933035 -93929592 - MIR SINE MIR -70 192 2 532 346 0 36 chr9 23933476 23933713 -93928914 + MIR SINE MIR 38 262 0 2391 99 15 46 chr9 23933878 23934290 -93928337 + L1MA2 LINE L1 5906 6304 0 2195 49 0 81 chr9 23935037 23935386 -93927241 - AluY SINE Alu 0 324 1 26 0 0 0 chr9 23935857 23935883 -93926744 + AT_rich Low_complexity Low_complexity 1 26 0 712 209 20 0 chr9 23937071 23937224 -93925403 + L1PB4 LINE L1 5999 6154 -2 270 147 35 17 chr9 23937800 23937873 -93924754 - L1ME3 LINE L1 0 6166 6092 743 244 157 14 chr9 23938462 23938679 -93923948 - MIR SINE MIR -11 251 4 229 268 96 22 chr9 23941186 23941287 -93921340 + MER5A DNA MER1_type 21 141 -48 5705 163 25 9 chr9 23941444 23942564 -93920063 + L1MC1 LINE L1 5186 6324 -9 187 407 23 0 chr9 23942602 23942688 -93919939 - L2 LINE L2 0 3272 3185 229 195 0 0 chr9 23944193 23944234 -93918393 - MIR SINE MIR -10 252 212 564 291 24 35 chr9 23944296 23944508 -93918119 - MIR SINE MIR 0 262 55 1393 199 11 31 chr9 23944661 23944948 -93917679 - AluJo SINE Alu -31 281 1 185 343 225 11 chr9 23945149 23945682 -93916945 - L2 LINE L2 -643 2671 2025 307 336 16 56 chr9 23946799 23946924 -93915703 + MIR SINE MIR 19 138 -70 190 164 36 0 chr9 23947657 23947712 -93914915 + (TA)n Simple_repeat Simple_repeat 2 58 0 1871 146 0 28 chr9 23947910 23948231 -93914396 - AluSx SINE Alu 0 312 1 1687 330 93 40 chr9 23948308 23949518 -93913109 + L3 LINE CR1 297 1571 -6 702 211 197 0 chr9 23950142 23950294 -93912333 - MER5A DNA MER1_type -6 183 2 234 263 25 0 chr9 23951143 23951223 -93911404 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 193 353 40 27 chr9 23951582 23951732 -93910895 - L2 LINE L2 -170 3102 2951 333 93 0 0 chr9 23951982 23952036 -93910591 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 318 167 0 0 chr9 23954804 23954864 -93907763 + C-rich Low_complexity Low_complexity 3 62 0 214 323 204 14 chr9 23954905 23955125 -93907502 - MIR SINE MIR 0 262 1 2316 25 4 4 chr9 23955511 23955791 -93906836 - L1PA5 LINE L1 -1 6153 5874 1745 20 5 0 chr9 23955791 23955993 -93906634 + L1PA5 LINE L1 5673 5875 -280 252 59 0 0 chr9 23956856 23956890 -93905737 + (TG)n Simple_repeat Simple_repeat 1 34 0 192 125 0 0 chr9 23956890 23956922 -93905705 + (GA)n Simple_repeat Simple_repeat 2 33 0 420 20 0 0 chr9 23957670 23957719 -93904908 + (TG)n Simple_repeat Simple_repeat 1 49 0 6604 85 4 1 chr9 23957789 23959209 -93903418 + L1PA8 LINE L1 4743 6165 -7 196 355 51 43 chr9 23959391 23959647 -93902980 - L2 LINE L2 -914 2400 2143 253 221 0 73 chr9 23961207 23961275 -93901352 + L2 LINE L2 3251 3313 0 * 381 326 42 37 chr9 23961249 23961439 -93901188 - MIR SINE MIR -6 256 66 2098 84 36 4 chr9 23962111 23962386 -93900241 - AluY SINE Alu -21 290 7 190 296 0 37 chr9 23962707 23962761 -93899866 - L3 LINE CR1 -6 1571 1520 1763 131 39 26 chr9 23963317 23963622 -93899005 + AluSx SINE Alu 1 309 -3 5992 124 28 3 chr9 23963961 23964921 -93897706 - Tigger3b DNA MER2_type -1 1230 247 229 280 0 0 chr9 23965081 23965131 -93897496 - Tigger3b DNA MER2_type -1181 50 1 398 375 118 16 chr9 23965134 23965438 -93897189 - L2 LINE L2 -4 3268 2934 2338 270 53 76 chr9 23965497 23966620 -93896007 - L2 LINE L2 0 3313 2195 593 230 199 11 chr9 23966654 23966845 -93895782 + MIR SINE MIR 32 258 -4 22 0 0 0 chr9 23967112 23967134 -93895493 + AT_rich Low_complexity Low_complexity 1 22 0 516 237 143 63 chr9 23967991 23968301 -93894326 + MLT1J LTR MaLR 172 607 -8 34 0 0 57 chr9 23968346 23968399 -93894228 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 23968422 23968443 -93894184 + AT_rich Low_complexity Low_complexity 1 21 0 642 258 22 29 chr9 23968540 23968904 -93893723 + MLT1I LTR MaLR 1 407 -2 225 363 12 0 chr9 23969255 23969335 -93893292 + L2 LINE L2 3184 3264 -49 565 269 23 50 chr9 23970201 23970420 -93892207 - MIR SINE MIR -43 219 7 35 41 0 0 chr9 23970577 23970626 -93892001 + AT_rich Low_complexity Low_complexity 1 49 0 599 292 43 53 chr9 23970762 23971043 -93891584 + MLT1J LTR MaLR 3 280 -231 405 329 48 16 chr9 23973173 23973381 -93889246 - MER20B DNA MER1_type 0 219 3 37 0 0 0 chr9 23975424 23975461 -93887166 + AT_rich Low_complexity Low_complexity 1 37 0 1470 234 63 35 chr9 23975584 23976075 -93886552 + MLT1D LTR MaLR 1 505 0 610 251 13 18 chr9 23976850 23977077 -93885550 - L1M4 LINE L1 -2918 3228 3003 621 210 0 0 chr9 23977085 23977209 -93885418 + FRAM SINE Alu 23 146 -30 240 111 0 0 chr9 23977209 23977245 -93885382 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 660 208 49 6 chr9 23977246 23977429 -93885198 - L1M4 LINE L1 -3149 2997 2807 360 262 54 42 chr9 23977433 23977601 -93885026 - L1ME1 LINE L1 -21 6145 5976 21 0 0 0 chr9 23978078 23978099 -93884528 + AT_rich Low_complexity Low_complexity 1 21 0 4888 167 43 21 chr9 23978146 23979043 -93883584 - MER21A LTR ERV1 -6 925 9 283 308 50 12 chr9 23979149 23979311 -93883316 - L1ME1 LINE L1 -2144 5664 5489 496 158 32 21 chr9 23979312 23979407 -93883220 + MLT1G1 LTR MaLR 1 96 -499 659 155 0 0 chr9 23979415 23979518 -93883109 + AluSq/x SINE Alu 1 103 -210 337 178 51 68 chr9 23979882 23979928 -93882699 - L1M4 LINE L1 -2902 3244 3199 1507 220 13 32 chr9 23979928 23980306 -93882321 + MLT1A2 LTR MaLR 4 374 0 337 178 51 68 chr9 23980306 23980377 -93882250 - L1M4 LINE L1 -2947 3199 3129 21 57 0 0 chr9 23980455 23980490 -93882137 + AT_rich Low_complexity Low_complexity 1 35 0 12963 147 40 18 chr9 23980490 23982854 -93879773 - Tigger1 DNA MER2_type 0 2418 2 202 263 105 21 chr9 23983762 23983781 -93878846 + L2 LINE L2 1958 1974 -1340 2229 191 19 5 chr9 23983781 23984201 -93878426 + MSTB LTR MaLR 1 426 0 202 263 105 21 chr9 23984201 23984276 -93878351 + L2 LINE L2 1974 2060 -1254 1372 198 44 47 chr9 23984278 23984641 -93877986 - MER67D LTR ERV1 0 514 153 1116 212 22 22 chr9 23984656 23984863 -93877764 + L1MB1 LINE L1 3913 4122 -2024 1330 186 110 15 chr9 23984863 23985191 -93877436 - MER46B DNA MER2_type -2 234 1 1116 212 22 22 chr9 23985191 23985257 -93877370 + L1MB1 LINE L1 4121 4186 -1960 880 144 0 78 chr9 23985269 23985449 -93877178 + L1MB1 LINE L1 5455 5620 -551 4914 186 21 56 chr9 23985468 23986989 -93875638 + L1MB1 LINE L1 4195 5769 -399 247 32 0 0 chr9 23986989 23987020 -93875607 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2396 50 0 0 chr9 23987020 23987301 -93875326 - AluY SINE Alu -1 311 1 4914 186 21 56 chr9 23987301 23987787 -93874840 + L1MB1 LINE L1 5767 6132 -36 209 206 57 35 chr9 23987400 23987441 -93875186 + (TA)n Simple_repeat Simple_repeat 1 40 -104 * 1759 164 35 35 chr9 23987441 23987814 -93874813 + L1MB1 LINE L1 5786 6158 -10 209 206 57 35 chr9 23987814 23987913 -93874714 + (TA)n Simple_repeat Simple_repeat 40 144 0 244 113 65 16 chr9 23987848 23987910 -93874717 + (TATAA)n Simple_repeat Simple_repeat 1 65 0 358 290 11 0 chr9 23987913 23988006 -93874621 - L2 LINE L2 -655 2659 2566 321 117 70 0 chr9 23988006 23988134 -93874493 + (TA)n Simple_repeat Simple_repeat 2 138 0 533 371 20 33 chr9 23988186 23988639 -93873988 + L2 LINE L2 2717 3156 -157 220 247 31 62 chr9 23988774 23988871 -93873756 + L2 LINE L2 3158 3251 -62 4972 156 61 8 chr9 23988974 23990097 -93872530 - L1PA15 LINE L1 -2 6163 4976 4752 96 24 63 chr9 23990101 23990893 -93871734 - L1PA8 LINE L1 -3 6169 5409 322 323 124 21 chr9 23991280 23991466 -93871161 + MIR SINE MIR 2 206 -56 503 305 93 49 chr9 23991471 23991717 -93870910 - MIR SINE MIR -5 257 1 189 0 0 0 chr9 23992483 23992504 -93870123 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 11904 95 3 7 chr9 23992504 23994946 -93867681 - L1PA7 LINE L1 -16 6138 3699 2037 134 13 7 chr9 23994946 23995253 -93867374 - AluSc SINE Alu 0 309 1 11904 95 3 7 chr9 23995253 23995302 -93867325 - L1PA7 LINE L1 -2455 3699 3651 1076 286 40 6 chr9 24045454 24045914 -93816713 - L1MC4 LINE L1 -98 7710 7222 3791 122 16 21 chr9 24045917 24046533 -93816094 - L1PA13 LINE L1 -4 6159 5547 1448 240 128 30 chr9 24046534 24047097 -93815530 - L1MC4 LINE L1 -961 7081 6464 186 209 0 0 chr9 24047524 24047567 -93815060 + GA-rich Low_complexity Low_complexity 5 47 0 254 245 0 0 chr9 24050709 24050762 -93811865 + MSTD LTR MaLR 2 54 -342 * 393 216 0 0 chr9 24050760 24050834 -93811793 - MSTD LTR MaLR -272 124 51 * 1004 241 96 25 chr9 24050814 24050923 -93811704 + MSTD LTR MaLR 51 151 -245 2398 92 0 0 chr9 24050923 24051229 -93811398 - AluSg SINE Alu -4 306 1 1004 241 96 25 chr9 24051229 24051442 -93811185 + MSTD LTR MaLR 151 396 0 2287 266 24 17 chr9 24051443 24052189 -93810438 + MSTD-int LTR MaLR 107 835 -816 2170 248 102 0 chr9 24052263 24052784 -93809843 + MSTD-int LTR MaLR 1159 1732 -3 932 202 126 60 chr9 24052790 24053126 -93809501 + MLT1A1 LTR MaLR 4 365 0 1891 198 19 0 chr9 24054595 24054954 -93807673 - MER47A DNA MER2_type 0 366 1 237 217 72 0 chr9 24055122 24055191 -93807436 - MIR SINE MIR -10 252 179 203 228 0 35 chr9 24055453 24055510 -93807117 + GA-rich Low_complexity Low_complexity 1 55 0 1867 121 0 11 chr9 24057013 24057285 -93805342 + AluSx SINE Alu 7 275 -37 231 286 55 0 chr9 24057352 24057443 -93805184 + L1ME2 LINE L1 259 354 -6209 411 317 73 31 chr9 24057923 24058210 -93804417 + L1ME2 LINE L1 825 1123 -5249 822 289 96 47 chr9 24058224 24058405 -93804222 + L1ME2 LINE L1 1041 1212 -5351 186 43 0 0 chr9 24058405 24058428 -93804199 + (CAA)n Simple_repeat Simple_repeat 2 24 0 822 289 96 47 chr9 24058428 24059126 -93803501 + L1ME2 LINE L1 1212 2118 -4445 1548 325 50 21 chr9 24059148 24060429 -93802198 - L1MEc LINE L1 -5006 1390 73 2548 234 109 55 chr9 24060460 24061850 -93800777 + L1ME2 LINE L1 4275 5754 -648 1608 88 0 0 chr9 24061865 24062080 -93800547 - L1PA8 LINE L1 -1947 4199 3985 7692 110 8 3 chr9 24062081 24064051 -93798576 + L1PA8 LINE L1 4193 6179 0 1347 255 13 83 chr9 24064051 24064593 -93798034 + L1ME2 LINE L1 5785 6288 -112 658 192 54 36 chr9 24064594 24064761 -93797866 + MER3 DNA MER1_type 2 124 -85 240 284 0 0 chr9 24064806 24064880 -93797747 + L1ME1 LINE L1 6088 6161 -5 521 325 46 16 chr9 24065295 24065489 -93797138 - MLT1I LTR MaLR -33 376 177 1990 136 0 0 chr9 24065726 24066035 -93796592 + AluSx SINE Alu 3 311 0 216 97 0 0 chr9 24067109 24067140 -93795487 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 86 0 0 chr9 24067535 24067570 -93795057 + (GA)n Simple_repeat Simple_repeat 2 36 0 2013 147 0 0 chr9 24068030 24068322 -93794305 + AluSx SINE Alu 6 297 -15 375 265 180 32 chr9 24069798 24069987 -93792640 - MLT1J LTR MaLR -61 450 234 521 259 21 28 chr9 24070497 24070640 -93791987 + MIR SINE MIR 1 142 -120 306 234 43 21 chr9 24071843 24071937 -93790690 + MIR SINE MIR 110 205 -57 442 292 67 58 chr9 24073014 24073254 -93789373 + MIR SINE MIR 19 260 -2 294 219 41 8 chr9 24073442 24073565 -93789062 + (TA)n Simple_repeat Simple_repeat 2 128 0 418 290 125 27 chr9 24074057 24074281 -93788346 - MIR SINE MIR -4 258 13 436 305 122 64 chr9 24074490 24074818 -93787809 + L3 LINE CR1 1173 1519 -58 740 195 5 80 chr9 24074915 24075115 -93787512 + MLT1A1 LTR MaLR 1 185 -180 882 223 64 32 chr9 24075122 24075342 -93787285 - MLT1A1 LTR MaLR -13 352 126 22 0 0 0 chr9 24075866 24075888 -93786739 + AT_rich Low_complexity Low_complexity 1 22 0 2075 149 5 27 chr9 24076018 24076386 -93786241 - MER46B DNA MER2_type -1 235 1 2530 55 3 0 chr9 24078029 24078338 -93784289 - AluY SINE Alu -1 310 1 414 0 0 0 chr9 24078635 24078681 -93783946 + (TTTA)n Simple_repeat Simple_repeat 4 49 0 1998 55 0 12 chr9 24078681 24078934 -93783693 - AluY SINE Alu -32 279 30 222 306 144 69 chr9 24080585 24080745 -93781882 + MIR SINE MIR 21 192 -70 285 98 0 0 chr9 24080764 24080805 -93781822 + (T)n Simple_repeat Simple_repeat 1 41 0 374 360 34 17 chr9 24081471 24081649 -93780978 - MER5A DNA MER1_type -2 187 7 2139 100 0 53 chr9 24082203 24082524 -93780103 + AluSc SINE Alu 1 304 -5 287 338 0 0 chr9 24083932 24084012 -93778615 - MIR SINE MIR -84 124 45 435 285 51 7 chr9 24084157 24084294 -93778333 + MIR SINE MIR 26 168 -94 383 250 32 70 chr9 24086583 24086739 -93775888 + MIR SINE MIR 57 206 -56 261 0 0 0 chr9 24088892 24088921 -93773706 + (CAA)n Simple_repeat Simple_repeat 2 30 0 485 226 0 7 chr9 24089080 24089217 -93773410 + CT-rich Low_complexity Low_complexity 1 136 0 2464 75 128 8 chr9 24089224 24089624 -93773003 - LTR7 LTR ERV1 -2 448 1 2274 106 50 13 chr9 24089624 24090000 -93772627 - HERVH LTR ERV1 0 7713 7324 1343 143 19 0 chr9 24090000 24090216 -93772411 - HERVH LTR ERV1 -1894 5819 5600 3678 149 9 2 chr9 24090217 24090788 -93771839 - HERVH LTR ERV1 -2564 5149 4575 1317 104 0 0 chr9 24090785 24090968 -93771659 - HERVH LTR ERV1 -3043 4670 4488 * 3533 75 20 6 chr9 24090970 24091465 -93771162 - HERVH LTR ERV1 -3720 3993 3492 868 154 20 0 chr9 24091455 24091604 -93771023 - HERVH LTR ERV1 -4423 3290 3139 * 15209 99 27 8 chr9 24091597 24093869 -93768758 - HERVH LTR ERV1 -4726 2987 672 3747 100 0 2 chr9 24093836 24094355 -93768272 - HERVH LTR ERV1 -7195 518 1 * 2368 89 127 15 chr9 24094357 24094760 -93767867 - LTR7 LTR ERV1 -2 448 1 687 250 6 6 chr9 24095096 24095252 -93767375 - MLT1D LTR MaLR 0 505 350 6110 155 31 38 chr9 24095252 24095515 -93767112 - L1M2 LINE L1 -619 5672 5409 2141 132 0 3 chr9 24095515 24095819 -93766808 - AluSg SINE Alu -7 303 1 6110 155 31 38 chr9 24095819 24097118 -93765509 - L1M2 LINE L1 -882 5409 4133 206 310 0 17 chr9 24097151 24097209 -93765418 + L2 LINE L2 2995 3051 -262 246 348 107 27 chr9 24097377 24097489 -93765138 + L2 LINE L2 3143 3263 -9 182 265 15 0 chr9 24099726 24099794 -93762833 + (TATATG)n Simple_repeat Simple_repeat 3 71 0 397 236 81 61 chr9 24099999 24100178 -93762449 + MER77 LTR ERV1 181 321 -241 356 213 32 21 chr9 24100242 24100336 -93762291 + MER21B LTR ERV1 620 714 -149 716 292 43 26 chr9 24101002 24101235 -93761392 - MIR SINE MIR -24 238 2 312 341 120 55 chr9 24101321 24101737 -93760890 + L2 LINE L2 2817 3259 -13 321 68 0 0 chr9 24102065 24102109 -93760518 + (TG)n Simple_repeat Simple_repeat 2 45 0 371 320 0 10 chr9 24103197 24103297 -93759330 - MIR SINE MIR -161 101 3 683 201 6 0 chr9 24105166 24105330 -93757297 + GA-rich Low_complexity Low_complexity 3 167 0 403 291 82 0 chr9 24107110 24107244 -93755383 - MIR SINE MIR -48 214 70 1924 200 25 73 chr9 24107611 24108142 -93754485 - MLT1D LTR MaLR 0 505 1 191 273 36 0 chr9 24110088 24110143 -93752484 - MIR SINE MIR -186 76 20 305 344 24 0 chr9 24110157 24110282 -93752345 + MIR3 SINE MIR 56 183 -25 207 0 0 0 chr9 24111419 24111442 -93751185 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1007 47 78 0 chr9 24112515 24112644 -93749983 + MER85 DNA T2_type 1 139 0 318 261 22 0 chr9 24114709 24114801 -93747826 + CT-rich Low_complexity Low_complexity 3 96 0 287 311 246 12 chr9 24114872 24115193 -93747434 - L3b LINE CR1 -86 1497 1102 180 176 0 0 chr9 24115970 24116004 -93746623 + (TG)n Simple_repeat Simple_repeat 1 34 0 382 293 44 47 chr9 24116266 24116439 -93746188 - MIR3 SINE MIR -64 144 1 34 0 0 0 chr9 24116603 24116637 -93745990 + AT_rich Low_complexity Low_complexity 1 34 0 2007 145 14 0 chr9 24117424 24117720 -93744907 + AluSx SINE Alu 1 300 -12 5721 76 43 34 chr9 24118303 24119122 -93743505 + LTR12 LTR ERV1 1 826 0 231 387 60 2 chr9 24119355 24119470 -93743157 + MIR SINE MIR 8 127 -81 697 279 139 0 chr9 24119533 24119741 -93742886 + MIR SINE MIR 19 255 -7 757 250 144 45 chr9 24119950 24120577 -93742050 + L1ME3A LINE L1 5443 6160 -10 1309 320 34 2 chr9 24121270 24121682 -93740945 - LTR16A LTR ERVL -5 445 21 399 262 8 16 chr9 24122010 24122132 -93740495 - HERV16 LTR ERVL -321 4675 4555 * 529 311 98 26 chr9 24122114 24122378 -93740249 - HERV16 LTR ERVL -475 5010 4728 390 299 68 71 chr9 24122716 24123196 -93739431 - HERV16 LTR ERVL -1116 3880 3515 494 346 67 26 chr9 24123240 24123812 -93738815 - HERV16 LTR ERVL -1888 3766 3207 333 349 81 0 chr9 24123949 24124098 -93738529 - HERV16 LTR ERVL -4273 723 563 648 345 47 19 chr9 24124131 24124450 -93738177 - LTR16A LTR ERVL -88 362 35 221 222 19 37 chr9 24125504 24125558 -93737069 + MIR SINE MIR 210 262 0 276 149 0 0 chr9 24125700 24125747 -93736880 + (GGAA)n Simple_repeat Simple_repeat 2 48 0 236 298 10 39 chr9 24125765 24125869 -93736758 - MIR SINE MIR -148 114 14 180 0 0 0 chr9 24127221 24127241 -93735386 + (TTATA)n Simple_repeat Simple_repeat 3 22 0 315 0 0 0 chr9 24128004 24128039 -93734588 + (TG)n Simple_repeat Simple_repeat 1 35 0 211 359 16 0 chr9 24128421 24128485 -93734142 - L2 LINE L2 -67 3205 3141 358 286 65 36 chr9 24129711 24129879 -93732748 + MIR SINE MIR 78 250 -12 850 201 143 101 chr9 24130022 24130350 -93732277 - MER90 LTR ERV1 -233 342 1 376 272 22 92 chr9 24130386 24130570 -93732057 + L3 LINE CR1 1117 1287 -290 218 275 64 55 chr9 24130691 24130800 -93731827 + L3 LINE CR1 1440 1549 -28 19160 33 2 0 chr9 24131279 24134374 -93728253 - L1PA3 LINE L1 0 6155 3060 487 281 100 6 chr9 24135491 24135651 -93726976 + MIR SINE MIR 83 257 -5 24 53 0 0 chr9 24137134 24137172 -93725455 + AT_rich Low_complexity Low_complexity 1 38 0 2552 74 0 0 chr9 24137429 24137740 -93724887 + AluY SINE Alu 1 311 0 404 263 74 47 chr9 24138090 24138455 -93724172 + L1M4 LINE L1 2933 3307 -2839 409 332 71 8 chr9 24138703 24138971 -93723656 - HAL1b LINE L1 -713 635 351 4134 227 67 22 chr9 24139071 24140252 -93722375 - L1MB7 LINE L1 -31 6389 5263 1573 175 66 66 chr9 24140252 24140646 -93721981 - MSTD LTR MaLR 0 396 3 4134 227 67 22 chr9 24140646 24140659 -93721968 - L1MB7 LINE L1 -1157 5263 5252 1609 179 39 0 chr9 24140659 24140944 -93721683 + AluJb SINE Alu 1 296 -16 4134 227 67 22 chr9 24140944 24141806 -93720821 - L1MB7 LINE L1 -1168 5252 4238 1150 319 30 3 chr9 24141867 24142231 -93720396 + MER70B LTR ERVL 77 450 -128 1618 246 41 41 chr9 24142351 24142741 -93719886 - L1MB7 LINE L1 -2139 4243 3854 2084 168 28 17 chr9 24142741 24143099 -93719528 + THE1B LTR MaLR 3 364 0 10979 111 4 3 chr9 24143099 24144677 -93717950 + THE1B-int LTR MaLR 1 1580 0 2086 138 16 35 chr9 24144677 24145048 -93717579 + THE1B LTR MaLR 1 364 0 1618 246 41 41 chr9 24145048 24145172 -93717455 - L1MB7 LINE L1 -2525 3857 3727 1079 273 50 43 chr9 24145224 24146211 -93716416 - L1MB7 LINE L1 -3749 2638 1543 252 0 0 0 chr9 24146211 24146239 -93716388 + (T)n Simple_repeat Simple_repeat 1 28 0 1020 236 10 10 chr9 24146446 24146743 -93715884 - AluSx SINE Alu -1 311 15 3518 249 62 100 chr9 24147163 24147595 -93715032 - L1M4c LINE L1 -4644 2002 1555 2399 106 0 0 chr9 24147595 24147906 -93714721 - AluSx SINE Alu -1 311 1 3518 249 62 100 chr9 24147906 24149503 -93713124 - L1M4c LINE L1 -5091 1555 1 214 195 52 0 chr9 24150547 24150624 -93712003 + (TA)n Simple_repeat Simple_repeat 2 82 0 25 0 0 0 chr9 24150708 24150733 -93711894 + AT_rich Low_complexity Low_complexity 1 25 0 787 170 7 7 chr9 24152351 24152486 -93710141 + AluSp SINE Alu 2 136 -177 837 254 22 17 chr9 24152491 24152723 -93709904 - L1MB7 LINE L1 -228 5956 5724 222 174 0 0 chr9 24152786 24152832 -93709795 + CT-rich Low_complexity Low_complexity 4 49 0 385 330 28 23 chr9 24155099 24155317 -93707310 + MLT1J1 LTR MaLR 3 221 -225 22 0 0 0 chr9 24156342 24156364 -93706263 + AT_rich Low_complexity Low_complexity 1 22 0 367 368 72 34 chr9 24156578 24156869 -93705758 + L1ME2 LINE L1 410 711 -5408 2610 238 87 7 chr9 24156871 24157469 -93705158 + MER82 DNA MER2_type 1 646 -7 7155 34 4 2 chr9 24157705 24157954 -93704673 - L1PA4 LINE L1 0 6155 5908 261 0 0 0 chr9 24157954 24157983 -93704644 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 7155 34 4 2 chr9 24157983 24158981 -93703646 - L1PA4 LINE L1 -247 5908 4889 9454 54 0 0 chr9 24158982 24160187 -93702440 + L1P LINE L1 1189 2393 -3753 572 296 52 26 chr9 24160202 24160562 -93702065 + L1ME2 LINE L1 959 1241 -4878 200 350 137 8 chr9 24161782 24161899 -93700728 + L2 LINE L2 2946 3077 -195 21 57 0 0 chr9 24162394 24162429 -93700198 + AT_rich Low_complexity Low_complexity 1 35 0 494 276 77 46 chr9 24163391 24163652 -93698975 - L1MC4 LINE L1 -478 7564 7296 274 321 80 48 chr9 24163705 24163892 -93698735 - L2 LINE L2 -663 2651 2459 3015 113 13 2 chr9 24164314 24164781 -93697846 - L1PA13 LINE L1 -3 6160 5689 254 353 41 8 chr9 24165422 24165544 -93697083 - MIR SINE MIR -65 197 72 25 0 0 0 chr9 24166614 24166639 -93695988 + AT_rich Low_complexity Low_complexity 1 25 0 32568 29 6 5 chr9 24166639 24171448 -93691179 - L1PA3 LINE L1 -3 6152 1338 21 82 0 0 chr9 24173917 24173966 -93688661 + AT_rich Low_complexity Low_complexity 1 49 0 359 345 22 84 chr9 24174206 24174565 -93688062 - MLT1I LTR MaLR -1 408 72 2159 263 157 31 chr9 24174752 24174935 -93687692 + L1ME2 LINE L1 3767 3926 -2203 6412 58 2 11 chr9 24174935 24175780 -93686847 + L1PA7 LINE L1 5303 6140 -14 2159 263 157 31 chr9 24175780 24176920 -93685707 + L1ME2 LINE L1 3926 5257 -872 2745 23 0 0 chr9 24176973 24177283 -93685344 + AluY SINE Alu 1 310 -1 850 300 15 10 chr9 24177290 24177644 -93684983 + L1ME2 LINE L1 5336 5693 -454 649 220 17 0 chr9 24177704 24177948 -93684679 + L1ME2 LINE L1 5835 6138 -9 216 0 0 0 chr9 24178383 24178407 -93684220 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 226 48 0 48 chr9 24178596 24178638 -93683989 + (TA)n Simple_repeat Simple_repeat 2 41 0 2220 116 0 3 chr9 24181056 24181366 -93681261 + AluSc SINE Alu 1 309 0 22 0 0 0 chr9 24181817 24181839 -93680788 + AT_rich Low_complexity Low_complexity 1 22 0 216 273 71 40 chr9 24182479 24182578 -93680049 + MIR SINE MIR 66 167 -95 28 29 0 0 chr9 24182598 24182633 -93679994 + AT_rich Low_complexity Low_complexity 1 35 0 182 222 89 0 chr9 24182663 24182708 -93679919 - L2 LINE L2 -86 3227 3179 274 361 82 19 chr9 24183620 24183778 -93678849 - MIR SINE MIR -13 249 82 24 32 0 0 chr9 24184105 24184136 -93678491 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr9 24185258 24185282 -93677345 + (A)n Simple_repeat Simple_repeat 1 24 0 252 279 68 94 chr9 24185718 24185983 -93676644 + HAL1b LINE L1 269 526 -822 231 36 0 0 chr9 24186016 24186044 -93676583 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 211 39 19 chr9 24186389 24186441 -93676186 + L2 LINE L2 3261 3313 0 201 213 0 0 chr9 24187545 24187592 -93675035 + GA-rich Low_complexity Low_complexity 4 50 0 306 351 11 0 chr9 24188650 24188824 -93673803 - L1MC4 LINE L1 -158 7884 7709 340 346 110 24 chr9 24188861 24189271 -93673356 - L1M4 LINE L1 -2365 4017 3573 452 252 87 8 chr9 24189463 24189590 -93673037 + L2 LINE L2 2400 2536 -778 753 224 100 61 chr9 24189710 24190367 -93672260 - L1M4 LINE L1 -3779 2603 1936 1550 206 14 14 chr9 24190445 24190800 -93671827 + L1MA9 LINE L1 4568 4922 -1224 * 14872 46 1 2 chr9 24190796 24192658 -93669969 - L1PA5 LINE L1 -1419 4727 2868 7381 40 0 0 chr9 24192658 24194088 -93668539 + L1PA5 LINE L1 4724 6153 -1 289 261 33 0 chr9 24194100 24194192 -93668435 + L1MA9 LINE L1 4909 5003 -1143 * 1180 29 0 0 chr9 24194188 24194328 -93668299 - L1P2 LINE L1 -692 5462 5323 5957 162 13 13 chr9 24194350 24194474 -93668153 + L1MA9 LINE L1 5032 5154 -1158 2096 142 0 0 chr9 24194474 24194777 -93667850 - AluSx SINE Alu -9 303 1 5957 162 13 13 chr9 24194777 24195913 -93666714 + L1MA9 LINE L1 5154 6292 -20 4688 32 2 7 chr9 24196312 24196882 -93665745 + L1PA4 LINE L1 5583 6149 -6 28 61 0 0 chr9 24196884 24196933 -93665694 + AT_rich Low_complexity Low_complexity 1 49 0 2222 278 67 15 chr9 24197155 24198836 -93663791 - L1ME3 LINE L1 -207 6373 4604 247 24 24 24 chr9 24198952 24198993 -93663634 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 267 262 0 0 chr9 24199440 24199523 -93663104 - L1ME3 LINE L1 -4628 1970 1873 2447 173 138 115 chr9 24199584 24200185 -93662442 - L1MC3 LINE L1 0 7785 7199 242 299 13 13 chr9 24200185 24200262 -93662365 - MLT1F1 LTR MaLR -456 111 35 2447 173 138 115 chr9 24200262 24200690 -93661937 - L1MC3 LINE L1 -586 7199 4640 2880 261 51 44 chr9 24200694 24201788 -93660839 - L1ME3 LINE L1 -4932 1113 12 332 315 97 35 chr9 24201841 24203079 -93659548 - L1MDa LINE L1 -4831 1384 56 695 244 109 58 chr9 24203142 24203573 -93659054 - HAL1b LINE L1 -278 1070 618 327 311 88 40 chr9 24203749 24203977 -93658650 - HAL1b LINE L1 -1037 311 73 180 324 73 0 chr9 24204843 24204911 -93657716 + MIR SINE MIR 29 101 -161 586 94 12 0 chr9 24206294 24206460 -93656167 - AluSg/x SINE Alu 0 364 198 38 75 0 0 chr9 24207107 24207187 -93655440 + AT_rich Low_complexity Low_complexity 1 80 0 23 33 0 0 chr9 24207264 24207294 -93655333 + AT_rich Low_complexity Low_complexity 1 30 0 191 366 73 24 chr9 24207882 24208005 -93654622 - L2 LINE L2 0 3313 3185 551 260 40 28 chr9 24208025 24208202 -93654425 - L2 LINE L2 0 3313 3135 482 234 11 0 chr9 24208270 24208364 -93654263 + MLT1H LTR MaLR 118 212 -337 1550 193 13 6 chr9 24208365 24208681 -93653946 + L1MA3 LINE L1 5988 6305 0 5145 162 39 3 chr9 24208992 24210398 -93652229 + L1MC1 LINE L1 4671 6113 -220 22 0 0 0 chr9 24210423 24210445 -93652182 + AT_rich Low_complexity Low_complexity 1 22 0 1147 160 0 89 chr9 24210627 24210670 -93651957 + MER46A DNA MER2_type 21 66 -2665 11571 189 32 8 chr9 24210670 24214039 -93648588 - L1PA13 LINE L1 -3 6160 2719 1147 160 0 89 chr9 24214039 24214232 -93648395 + MER46A DNA MER2_type 66 236 0 213 360 117 28 chr9 24214251 24214465 -93648162 - L2 LINE L2 -499 2815 2583 361 367 116 14 chr9 24214539 24214754 -93647873 + L2 LINE L2 2857 3093 -220 245 316 0 13 chr9 24214880 24214956 -93647671 + MLT1I LTR MaLR 86 160 -249 227 250 45 98 chr9 24216668 24216800 -93645827 + MLT1I LTR MaLR 274 398 -11 335 268 88 67 chr9 24216865 24217059 -93645568 + L2 LINE L2 3116 3313 0 741 223 55 45 chr9 24217145 24217436 -93645191 + L1MD2 LINE L1 4730 5023 -1123 * 13993 101 22 30 chr9 24217434 24219665 -93642962 - L1P LINE L1 -1845 4301 2089 6575 64 15 7 chr9 24219671 24221360 -93641267 + L1PA7 LINE L1 4447 6151 -3 3935 196 62 63 chr9 24221360 24221551 -93641076 + L1MD2 LINE L1 5009 5199 -1160 2146 73 3 23 chr9 24221551 24221854 -93640773 + AluY SINE Alu 1 297 -14 3935 196 62 63 chr9 24221854 24222327 -93640300 + L1MD2 LINE L1 5199 5671 -688 1931 151 0 3 chr9 24222327 24222631 -93639996 + AluSg SINE Alu 1 303 -7 3935 196 62 63 chr9 24222631 24223327 -93639300 + L1MD2 LINE L1 5671 6357 -2 549 205 0 82 chr9 24223312 24223483 -93639144 + L1ME LINE L1 5582 5738 -428 * 469 301 23 123 chr9 24223526 24223868 -93638759 - L2 LINE L2 -338 2976 2669 187 222 254 63 chr9 24225153 24225279 -93637348 - L2 LINE L2 0 3272 3123 581 322 86 17 chr9 24225393 24225685 -93636942 - L2 LINE L2 0 3313 3002 1134 197 86 8 chr9 24225685 24225919 -93636708 - MLT1D LTR MaLR 0 505 254 591 207 0 37 chr9 24225982 24226117 -93636510 - MLT1D LTR MaLR -375 130 1 234 268 14 14 chr9 24226319 24226390 -93636237 + CT-rich Low_complexity Low_complexity 2 72 0 358 329 121 26 chr9 24227159 24227615 -93635012 + L1MC4a LINE L1 6091 6589 -1219 1844 178 0 6 chr9 24228047 24228361 -93634266 - AluJb SINE Alu 0 312 1 205 273 0 0 chr9 24228881 24228936 -93633691 + (TATATG)n Simple_repeat Simple_repeat 1 55 0 195 345 53 35 chr9 24228949 24229062 -93633565 + MIR3 SINE MIR 2 116 -92 419 327 65 12 chr9 24229260 24229428 -93633199 - MIR SINE MIR -84 178 2 384 317 179 0 chr9 24229769 24229914 -93632713 - MER5A DNA MER1_type -1 188 18 22 0 0 0 chr9 24230636 24230658 -93631969 + AT_rich Low_complexity Low_complexity 1 22 0 2858 232 91 38 chr9 24231205 24232437 -93630190 + L1MDb LINE L1 785 2046 -4360 3049 274 30 60 chr9 24232469 24234392 -93628235 + L1M3a LINE L1 4 1864 -4171 1348 205 87 9 chr9 24234513 24234835 -93627792 + MLT1A1 LTR MaLR 19 365 0 671 195 36 61 chr9 24234859 24235073 -93627554 - MSTD LTR MaLR -2 394 164 247 241 36 24 chr9 24235135 24235218 -93627409 - MSTD LTR MaLR -267 107 24 2452 252 82 25 chr9 24235257 24236143 -93626484 - MSTD-int LTR MaLR -2 1733 712 * 5106 216 40 17 chr9 24236129 24236500 -93626127 + L1M3a LINE L1 1969 2330 -3704 366 115 0 0 chr9 24236500 24236561 -93626066 + (CA)n Simple_repeat Simple_repeat 2 62 0 5106 216 40 17 chr9 24236561 24237675 -93624952 + L1M3a LINE L1 2330 3489 -2545 398 345 126 5 chr9 24237987 24238210 -93624417 + MIR SINE MIR 3 252 -10 29 0 0 0 chr9 24238350 24238379 -93624248 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 24238482 24238503 -93624124 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 24238734 24238755 -93623872 + AT_rich Low_complexity Low_complexity 1 21 0 188 279 186 12 chr9 24238969 24239055 -93623572 + MIR SINE MIR 74 174 -88 324 188 0 0 chr9 24240115 24240179 -93622448 + (TA)n Simple_repeat Simple_repeat 1 64 0 271 349 64 0 chr9 24240406 24240515 -93622112 + MIR3 SINE MIR 82 197 -11 317 252 27 9 chr9 24241139 24241250 -93621377 + MLT1H LTR MaLR 18 130 -419 186 283 53 26 chr9 24241751 24241864 -93620763 + L2 LINE L2 2624 2739 -575 240 380 58 44 chr9 24242132 24242358 -93620269 + L2 LINE L2 2827 3055 -217 1834 154 27 0 chr9 24243198 24243496 -93619131 - AluSx SINE Alu -6 306 1 198 103 0 0 chr9 24243879 24243908 -93618719 + (TG)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr9 24243928 24243953 -93618674 + (CA)n Simple_repeat Simple_repeat 2 26 0 1939 143 3 10 chr9 24243955 24244255 -93618372 - AluSx SINE Alu -14 298 1 489 190 129 37 chr9 24244395 24244558 -93618069 - MER5B DNA MER1_type 0 178 1 2764 16 0 0 chr9 24244822 24245125 -93617502 + AluY SINE Alu 1 303 -8 309 95 0 0 chr9 24246008 24246050 -93616577 + MADE1 DNA Mariner 39 80 0 252 349 24 30 chr9 24246295 24246461 -93616166 + L2 LINE L2 3119 3283 -30 1059 177 39 155 chr9 24246949 24247362 -93615265 + MLT1A1 LTR MaLR 1 365 0 6778 225 78 28 chr9 24247462 24249103 -93613524 + MLT1A1-int LTR MaLR 13 1735 0 225 291 17 17 chr9 24250495 24250561 -93612066 - MER5A DNA MER1_type -1 188 112 349 197 103 43 chr9 24250789 24250906 -93611721 - L1ME3A LINE L1 -58 6112 5989 1430 171 8 4 chr9 24251031 24251295 -93611332 - L1MD3 LINE L1 -1 7994 7730 1739 212 3 3 chr9 24301430 24301751 -93560876 - MLT1A1 LTR MaLR -37 328 8 9720 46 2 1 chr9 24301972 24303180 -93559447 - L1PA5 LINE L1 -1500 4646 3438 7215 47 0 0 chr9 24303182 24304664 -93557963 + L1PA5 LINE L1 4656 6145 -9 180 0 0 0 chr9 24304664 24304684 -93557943 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 192 352 0 34 chr9 24304790 24304878 -93557749 + MIR3 SINE MIR 103 187 -21 2253 113 0 0 chr9 24305007 24305317 -93557310 + AluSg SINE Alu 1 310 0 971 291 58 3 chr9 24305591 24305918 -93556709 - MER113 DNA MER1_type? -173 348 4 591 308 56 19 chr9 24306496 24306762 -93555865 + L2 LINE L2 2003 2278 -1036 651 273 0 6 chr9 24306769 24306945 -93555682 + HERVL-B3 LTR ERVL 2 176 -5478 2085 227 68 4 chr9 24306948 24307406 -93555221 - ERVL LTR ERVL -2331 3433 2947 289 179 0 18 chr9 24307431 24307487 -93555140 - ERVL LTR ERVL -5514 250 196 * 2105 173 6 0 chr9 24307486 24307845 -93554782 - ERVL LTR ERVL -1965 3799 3439 5024 185 27 5 chr9 24307845 24308741 -93553886 + HERVL-B3 LTR ERVL 3799 4714 -1050 2183 185 36 6 chr9 24308728 24309291 -93553336 + HERVL-B3 LTR ERVL 5123 5757 -7 * 2590 193 5 77 chr9 24309291 24309888 -93552739 + MLT2B3 LTR ERVL 1 554 0 458 264 163 4 chr9 24309888 24310115 -93552512 + L2 LINE L2 2283 2545 -769 274 222 19 0 chr9 24310783 24310837 -93551790 + ERVL LTR ERVL 4588 4642 -1122 1061 232 50 21 chr9 24311003 24311439 -93551188 - MLT1D LTR MaLR -7 498 5 27 29 0 0 chr9 24311818 24311852 -93550775 + AT_rich Low_complexity Low_complexity 1 34 0 340 287 50 10 chr9 24311943 24312044 -93550583 - L2 LINE L2 -1 3312 3208 227 366 13 33 chr9 24312172 24312325 -93550302 - L2 LINE L2 -189 3083 2934 769 255 33 28 chr9 24312332 24312544 -93550083 + MER20 DNA MER1_type 7 219 0 33 80 0 0 chr9 24313013 24313088 -93549539 + AT_rich Low_complexity Low_complexity 1 75 0 219 330 21 10 chr9 24315359 24315456 -93547171 + MIR3 SINE MIR 104 201 -7 442 250 219 21 chr9 24315468 24315660 -93546967 + MER69 DNA AcHobo 2 231 -2295 329 167 149 16 chr9 24315668 24315762 -93546865 + MER69 DNA AcHobo 2435 2525 -1 21 0 0 0 chr9 24316354 24316375 -93546252 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr9 24316740 24316764 -93545863 + AT_rich Low_complexity Low_complexity 1 24 0 268 290 254 26 chr9 24317350 24317881 -93544746 + L2 LINE L2 2109 2760 -554 290 278 56 22 chr9 24317935 24318025 -93544602 + L2 LINE L2 3192 3284 -29 300 211 13 26 chr9 24318559 24318635 -93543992 - MER112 DNA MER1_type -183 77 3 22 0 0 0 chr9 24318732 24318754 -93543873 + AT_rich Low_complexity Low_complexity 1 22 0 1452 213 46 20 chr9 24318823 24319171 -93543456 + MLT1D LTR MaLR 1 357 -148 21 36 0 0 chr9 24320708 24320736 -93541891 + AT_rich Low_complexity Low_complexity 1 28 0 207 301 81 44 chr9 24320761 24320897 -93541730 + MIR3 SINE MIR 30 170 -38 209 374 65 0 chr9 24320927 24321034 -93541593 + MIR SINE MIR 26 139 -123 319 253 22 22 chr9 24321193 24321284 -93541343 - MIR SINE MIR -20 242 152 4246 142 47 5 chr9 24321294 24322046 -93540581 - L1PB4 LINE L1 -3 6153 5371 419 283 19 19 chr9 24322071 24322177 -93540450 - MIR SINE MIR -155 107 2 1479 214 14 0 chr9 24322803 24323097 -93539530 - AluJo SINE Alu -12 300 3 234 227 15 15 chr9 24324362 24324428 -93538199 + MER116 DNA Mariner 2 67 -13 533 200 15 156 chr9 24326468 24326673 -93535954 - MER45A DNA AcHobo 0 178 3 956 308 13 60 chr9 24326749 24327197 -93535430 - LTR16B LTR ERVL -2 462 36 301 266 128 11 chr9 24327732 24327826 -93534801 - L2 LINE L2 0 3272 3168 414 343 14 14 chr9 24327831 24327974 -93534653 - MER5A DNA MER1_type 0 189 47 1656 237 41 50 chr9 24328075 24328669 -93533958 + MLT1D LTR MaLR 1 626 0 2516 175 69 41 chr9 24328898 24329465 -93533162 - LTR49 LTR ERV1 -10 585 3 255 31 0 0 chr9 24329966 24329998 -93532629 + (TG)n Simple_repeat Simple_repeat 2 33 0 4021 156 17 10 chr9 24330136 24330833 -93531794 + MER50 LTR ERV1 1 702 -32 1597 197 109 93 chr9 24330843 24331402 -93531225 - LTR36 LTR ERV1 -43 568 1 823 166 198 28 chr9 24331512 24331545 -93531082 + MER39B LTR ERV1 3 29 -624 180 0 0 0 chr9 24331545 24331565 -93531062 + (CAG)n Simple_repeat Simple_repeat 3 22 0 823 166 198 28 chr9 24331565 24331748 -93530879 + MER39B LTR ERV1 29 256 -397 936 205 31 26 chr9 24331748 24331977 -93530650 + AluJo SINE Alu 72 301 -11 1365 145 5 5 chr9 24331977 24332188 -93530439 + MER39B LTR ERV1 247 457 -196 263 54 0 27 chr9 24332188 24332225 -93530402 - THE1B LTR MaLR 0 364 329 27 29 0 0 chr9 24332489 24332523 -93530104 + AT_rich Low_complexity Low_complexity 1 34 0 181 146 42 0 chr9 24332526 24332574 -93530053 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 24 0 0 0 chr9 24333061 24333085 -93529542 + AT_rich Low_complexity Low_complexity 1 24 0 2106 230 132 30 chr9 24333294 24334386 -93528241 + L1ME1 LINE L1 4948 6161 -5 33 56 0 0 chr9 24335268 24335322 -93527305 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr9 24335337 24335360 -93527267 + AT_rich Low_complexity Low_complexity 1 23 0 1536 161 39 25 chr9 24336188 24336473 -93526154 - MER89 LTR ERV1 -3 556 268 517 300 28 33 chr9 24336464 24336644 -93525983 - LTR33A LTR ERVL -340 183 5 * 1081 156 0 0 chr9 24337218 24337397 -93525230 + L1PA13 LINE L1 5982 6160 -3 598 148 19 28 chr9 24337447 24337555 -93525072 + FLAM_C SINE Alu 24 130 -13 723 242 149 0 chr9 24338079 24338307 -93524320 - MIR SINE MIR 0 262 2 4418 147 41 31 chr9 24339248 24340033 -93522594 + MER54B LTR ERVL 1 793 0 207 0 0 0 chr9 24340541 24340564 -93522063 + (TG)n Simple_repeat Simple_repeat 2 24 0 200 83 28 0 chr9 24340564 24340595 -93522032 + (TA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr9 24341277 24341298 -93521329 + (T)n Simple_repeat Simple_repeat 1 21 0 2475 109 19 0 chr9 24341722 24342090 -93520537 + THE1C LTR MaLR 1 375 0 202 330 104 0 chr9 24342854 24342960 -93519667 - MIR SINE MIR 0 262 146 613 291 61 75 chr9 24343481 24343806 -93518821 - L1M4c LINE L1 -832 1911 1583 2309 95 0 0 chr9 24343806 24344112 -93518515 - AluY SINE Alu -5 306 1 613 291 61 75 chr9 24344112 24344238 -93518389 - L1M4c LINE L1 -1160 1583 1457 925 239 9 18 chr9 24344238 24344464 -93518163 - MER58A DNA MER1_type 0 224 1 613 291 61 75 chr9 24344464 24344893 -93517734 - L1M4c LINE L1 -1286 1457 810 195 69 0 0 chr9 24344912 24344941 -93517686 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1062 122 0 0 chr9 24345882 24346029 -93516598 - AluSx SINE Alu -39 273 127 1038 98 0 0 chr9 24346066 24346199 -93516428 - AluSx SINE Alu -180 133 1 367 329 29 29 chr9 24346294 24346431 -93516196 - MIR3 SINE MIR -24 184 48 288 0 0 0 chr9 24347220 24347252 -93515375 + (TG)n Simple_repeat Simple_repeat 2 33 0 186 43 0 0 chr9 24347251 24347274 -93515353 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 * 464 231 0 66 chr9 24347298 24347419 -93515208 - FLAM_C SINE Alu -26 117 5 750 299 57 68 chr9 24347422 24347807 -93514820 - L2 LINE L2 -42 3271 2891 215 322 11 58 chr9 24347839 24347926 -93514701 - L2 LINE L2 -1 3271 3189 191 36 36 0 chr9 24347980 24348008 -93514619 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 305 298 46 20 chr9 24348641 24348792 -93513835 + L1ME4a LINE L1 5767 5921 -200 22 0 0 0 chr9 24348793 24348815 -93513812 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr9 24348911 24348953 -93513674 + AT_rich Low_complexity Low_complexity 1 42 0 767 153 0 29 chr9 24348956 24349093 -93513534 + AluJb SINE Alu 171 303 -9 226 171 24 0 chr9 24349597 24349638 -93512989 + MER5A DNA MER1_type 7 48 -141 208 323 0 15 chr9 24350065 24350130 -93512497 - L2 LINE L2 -821 2493 2430 4102 72 24 0 chr9 24350524 24351065 -93511562 - MER41A LTR ERV1 0 554 1 1351 203 50 56 chr9 24351447 24351857 -93510770 - MER67C LTR ERV1 -241 273 1 3095 136 99 74 chr9 24352093 24352726 -93509901 + LTR8 LTR ERV1 1 649 -42 721 213 13 13 chr9 24352731 24352881 -93509746 - AluJo SINE Alu -157 155 6 343 260 62 5 chr9 24353157 24353349 -93509278 - L1MD2 LINE L1 -414 5945 5847 289 207 0 0 chr9 24353411 24353469 -93509158 - L1MC4 LINE L1 0 8042 7985 4316 225 96 24 chr9 24353470 24353688 -93508939 - L1MC4 LINE L1 -143 7899 7698 621 243 52 23 chr9 24353688 24353861 -93508766 - MER45A DNA AcHobo 0 178 1 4316 225 96 24 chr9 24353861 24354988 -93507639 - L1MC4 LINE L1 -344 7698 6457 21 36 0 0 chr9 24355839 24355867 -93506760 + AT_rich Low_complexity Low_complexity 1 28 0 1589 228 29 51 chr9 24355952 24356020 -93506607 + MLT1D LTR MaLR 7 75 -430 2824 149 52 47 chr9 24356020 24356612 -93506015 - LTR49 LTR ERV1 0 595 1 1589 228 29 51 chr9 24356612 24356994 -93505633 + MLT1D LTR MaLR 75 447 -58 24 85 0 0 chr9 24357197 24357244 -93505383 + AT_rich Low_complexity Low_complexity 1 47 0 445 283 74 30 chr9 24357324 24357561 -93505066 - L1ME4a LINE L1 -193 5928 5676 2084 130 0 25 chr9 24357561 24357877 -93504750 - AluSq SINE Alu -5 308 1 445 283 74 30 chr9 24357877 24357908 -93504719 - L1ME4a LINE L1 -445 5676 5648 479 212 0 10 chr9 24357910 24358009 -93504618 + MER49 LTR ERV1 1 98 -825 * 1394 129 27 65 chr9 24358005 24358268 -93504359 + MER4D LTR ERV1 324 576 -327 3090 97 14 0 chr9 24358269 24358704 -93503923 - L1PA10 LINE L1 0 6168 5728 2573 101 0 0 chr9 24358704 24359059 -93503568 - THE1A LTR MaLR 0 355 1 11469 96 6 5 chr9 24359059 24360628 -93501999 - THE1A-int LTR MaLR 0 1580 9 710 295 9 9 chr9 24360628 24360845 -93501782 - L1P3 LINE L1 -5648 227 11 1790 170 29 14 chr9 24360850 24361197 -93501430 + MER4D LTR ERV1 545 896 -7 32 26 0 0 chr9 24361399 24361438 -93501189 + AT_rich Low_complexity Low_complexity 1 39 0 381 387 106 24 chr9 24362099 24362430 -93500197 - L2 LINE L2 -2 3270 2913 22 0 0 0 chr9 24364249 24364271 -93498356 + AT_rich Low_complexity Low_complexity 1 22 0 457 309 62 33 chr9 24364904 24365114 -93497513 + MLT1I LTR MaLR 194 409 0 706 208 0 0 chr9 24365319 24365444 -93497183 + FLAM_C SINE Alu 1 125 -18 24 67 0 0 chr9 24365444 24365489 -93497138 + AT_rich Low_complexity Low_complexity 1 45 0 337 268 275 0 chr9 24365490 24365628 -93496999 - MIR SINE MIR -13 249 74 21 36 0 0 chr9 24366516 24366544 -93496083 + AT_rich Low_complexity Low_complexity 1 28 0 1886 133 7 0 chr9 24366746 24367017 -93495610 + AluSg SINE Alu 21 293 -17 2285 173 24 21 chr9 24367596 24368065 -93494562 + L1MA10 LINE L1 5863 6332 -2 6463 30 1 0 chr9 24368209 24368973 -93493654 - L1PA3 LINE L1 0 6155 5391 5847 30 0 42 chr9 24368967 24369733 -93492894 + L1PA3 LINE L1 4667 5400 -746 * 1328 203 51 0 chr9 24370098 24370380 -93492247 + AluJb SINE Alu 14 308 0 263 177 16 0 chr9 24370386 24370448 -93492179 + (TA)n Simple_repeat Simple_repeat 1 63 0 469 111 15 70 chr9 24370512 24370789 -93491838 + (CATATA)n Simple_repeat Simple_repeat 1 261 0 452 318 20 7 chr9 24370810 24370958 -93491669 + MIR SINE MIR 63 212 -50 1195 210 72 26 chr9 24370958 24371360 -93491267 + L1M4 LINE L1 2735 3159 -2987 1320 212 17 17 chr9 24371364 24371656 -93490971 + AluJo SINE Alu 1 292 -20 28 29 0 0 chr9 24371656 24371691 -93490936 + AT_rich Low_complexity Low_complexity 1 35 0 385 197 120 0 chr9 24371719 24371836 -93490791 + MER106B DNA MER1_type 903 1033 -26 3749 245 53 45 chr9 24371861 24372969 -93489658 + L1M4 LINE L1 3318 4416 -1730 2075 131 3 0 chr9 24372969 24373260 -93489367 + AluSx SINE Alu 2 293 -19 3749 245 53 45 chr9 24373260 24373573 -93489054 + L1M4 LINE L1 4416 4754 -1392 1347 233 45 22 chr9 24373573 24373930 -93488697 - MLT1A1 LTR MaLR 0 365 1 3749 245 53 45 chr9 24373930 24374049 -93488578 + L1M4 LINE L1 4754 4871 -1275 2364 244 38 65 chr9 24374053 24374837 -93487790 - L1M4 LINE L1 -5733 809 47 5530 126 11 29 chr9 24374842 24375221 -93487406 - L1PA15 LINE L1 -3 6162 5778 234 91 0 0 chr9 24375221 24375254 -93487373 + (CA)n Simple_repeat Simple_repeat 2 34 0 5530 126 11 29 chr9 24375254 24375730 -93486897 - L1PA15 LINE L1 -387 5778 5295 2357 58 3 61 chr9 24375730 24376060 -93486567 - AluY SINE Alu 0 311 1 5530 126 11 29 chr9 24376060 24376606 -93486021 - L1PA15 LINE L1 -870 5295 4783 1585 228 15 25 chr9 24377541 24377941 -93484686 + MSTD LTR MaLR 1 396 0 2263 110 0 7 chr9 24378691 24379000 -93483627 - AluSx SINE Alu -3 309 3 295 294 109 25 chr9 24379428 24379547 -93483080 + MIR SINE MIR 9 137 -125 275 307 18 18 chr9 24379553 24379667 -93482960 + MIR SINE MIR 78 191 -71 7200 40 1 1 chr9 24379667 24380675 -93481952 + L1PA5 LINE L1 5121 6128 -26 21 36 0 0 chr9 24381560 24381588 -93481039 + AT_rich Low_complexity Low_complexity 1 28 0 2070 171 49 3 chr9 24382295 24382680 -93479947 - MER57A LTR ERV1 0 403 1 1254 184 35 27 chr9 24382680 24382936 -93479691 - MER57A-int LTR ERV1 0 7537 7280 629 154 41 8 chr9 24382938 24383061 -93479566 - LTR54B LTR ERV1 -369 129 3 6602 185 29 29 chr9 24383061 24384383 -93478244 - MER57A-int LTR ERV1 -391 7146 5825 1305 143 4 13 chr9 24384711 24384941 -93477686 - MER57A-int LTR ERV1 -1716 5821 5594 328 192 19 0 chr9 24384941 24385045 -93477582 + (TA)n Simple_repeat Simple_repeat 2 107 0 4847 191 41 37 chr9 24385045 24386400 -93476227 - MER57A-int LTR ERV1 -1586 4745 3710 933 190 41 5 chr9 24386563 24386758 -93475869 + MER57-int LTR ERV1 4886 5087 -2450 278 206 29 0 chr9 24386852 24386920 -93475707 - MER41-int LTR ERV1 -3772 1164 1095 * 424 252 71 15 chr9 24386890 24387112 -93475515 - MER41-int LTR ERV1 -3591 1982 1096 399 216 0 0 chr9 24387237 24387311 -93475316 - MER34C LTR ERV1 -355 230 157 253 237 0 17 chr9 24387382 24387441 -93475186 - MER41-int LTR ERV1 -3222 2724 2667 3943 189 42 38 chr9 24387544 24388382 -93474245 - MER41-int LTR ERV1 -6694 843 3 283 279 29 10 chr9 24389108 24389212 -93473415 - L1MD3 LINE L1 -11 7984 7879 257 315 56 22 chr9 24390441 24390530 -93472097 - L2 LINE L2 0 3272 3181 25 51 0 0 chr9 24391843 24391882 -93470745 + AT_rich Low_complexity Low_complexity 1 39 0 1917 155 11 11 chr9 24392333 24392687 -93469940 + L1MA4 LINE L1 5937 6290 -10 208 363 113 19 chr9 24393103 24393263 -93469364 - L2 LINE L2 0 3272 3098 250 233 17 17 chr9 24394004 24394064 -93468563 - MIR SINE MIR -119 143 84 709 290 97 34 chr9 24394243 24394750 -93467877 - L1M4 LINE L1 -2261 3885 3347 190 0 0 0 chr9 24394985 24395006 -93467621 + (TTTA)n Simple_repeat Simple_repeat 2 92 0 1801 116 0 4 chr9 24395006 24395256 -93467371 - AluY SINE Alu -1 303 35 1035 76 8 0 chr9 24395269 24395400 -93467227 - AluSq/x SINE Alu -178 134 3 329 360 23 6 chr9 24395405 24395580 -93467047 - L1M4 LINE L1 -1481 4665 4488 227 170 80 0 chr9 24395755 24395867 -93466760 + (TA)n Simple_repeat Simple_repeat 1 121 0 876 226 39 42 chr9 24395877 24396183 -93466444 + L1MC4a LINE L1 6165 6469 -1339 948 173 6 34 chr9 24396216 24396395 -93466232 - FRAM SINE Alu -5 171 1 3574 256 62 17 chr9 24396395 24397667 -93464960 + L1MC4a LINE L1 6479 7807 -1 501 204 7 36 chr9 24397686 24397823 -93464804 + L1MD2 LINE L1 6215 6347 -12 1166 157 33 121 chr9 24397842 24397964 -93464663 + AluYb8 SINE Alu 16 147 -171 2216 77 3 13 chr9 24397964 24398263 -93464364 + AluY SINE Alu 1 296 -15 1166 157 33 121 chr9 24398263 24398472 -93464155 + AluYb8 SINE Alu 147 318 0 383 303 50 9 chr9 24398476 24398697 -93463930 + L1MEc LINE L1 1445 1674 -4722 3061 270 68 8 chr9 24399000 24399871 -93462756 - ERVL LTR ERVL -795 4969 4047 2164 121 0 9 chr9 24400634 24400949 -93461678 + AluSx SINE Alu 1 312 0 303 291 7 101 chr9 24402075 24402223 -93460404 - L2 LINE L2 -185 3087 2954 196 296 56 46 chr9 24402523 24402631 -93459996 - L2 LINE L2 -756 2558 2450 24 53 0 0 chr9 24403712 24403750 -93458877 + AT_rich Low_complexity Low_complexity 1 38 0 841 155 0 0 chr9 24403750 24403879 -93458748 + FRAM SINE Alu 34 162 -14 460 343 47 0 chr9 24403880 24404052 -93458575 - MIR SINE MIR -82 180 1 300 331 78 37 chr9 24404389 24404631 -93457996 + L2 LINE L2 2810 3061 -211 1556 198 44 32 chr9 24405872 24406215 -93456412 - MER7A DNA MER2_type -1 345 1 184 280 0 20 chr9 24406580 24406630 -93455997 + MIR3 SINE MIR 108 156 -52 243 149 40 0 chr9 24406665 24406739 -93455888 + (TA)n Simple_repeat Simple_repeat 2 78 0 399 345 15 45 chr9 24406806 24407006 -93455621 + MIR3 SINE MIR 14 207 -1 1297 212 82 137 chr9 24407733 24408281 -93454346 - MLT1E1 LTR MaLR 0 654 137 192 40 0 0 chr9 24408771 24408796 -93453831 + (TG)n Simple_repeat Simple_repeat 2 26 0 355 345 28 26 chr9 24408865 24409057 -93453570 - MIR SINE MIR -49 213 22 181 260 104 13 chr9 24409151 24409228 -93453399 + L2 LINE L2 3139 3222 -50 30 0 0 0 chr9 24409865 24409895 -93452732 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 24410292 24410319 -93452308 + (TA)n Simple_repeat Simple_repeat 1 27 0 225 267 33 0 chr9 24410487 24410547 -93452080 - MIR SINE MIR -119 143 82 26 0 0 0 chr9 24411332 24411358 -93451269 + AT_rich Low_complexity Low_complexity 1 26 0 229 340 71 35 chr9 24411458 24411599 -93451028 - L2 LINE L2 0 3313 3168 208 321 49 0 chr9 24411846 24411927 -93450700 + L2 LINE L2 3229 3313 0 198 293 40 107 chr9 24412953 24413103 -93449524 - L3 LINE CR1 -549 1028 889 272 284 11 23 chr9 24413285 24413373 -93449254 - L2 LINE L2 -6 3307 3221 553 91 0 13 chr9 24413604 24413681 -93448946 - THE1B LTR MaLR -1 363 288 2125 146 8 40 chr9 24413681 24414057 -93448570 - THE1B LTR MaLR 0 364 1 10139 108 26 35 chr9 24414057 24415651 -93446976 - THE1B-int LTR MaLR 0 1580 1 2444 122 8 3 chr9 24415651 24416013 -93446614 - THE1B LTR MaLR 0 364 1 2655 19 7 3 chr9 24416999 24417309 -93445318 + AluY SINE Alu 1 311 0 695 210 41 39 chr9 24417405 24417560 -93445067 - MER45A DNA AcHobo 0 178 27 242 245 0 0 chr9 24417614 24417667 -93444960 + L2 LINE L2 3261 3313 0 1052 290 96 35 chr9 24418556 24419133 -93443494 + MER115 DNA AcHobo 3 543 -3488 290 26 26 0 chr9 24419133 24419172 -93443455 + (TG)n Simple_repeat Simple_repeat 2 41 0 1052 290 96 35 chr9 24419172 24419240 -93443387 + MER115 DNA AcHobo 543 4031 0 22 0 0 0 chr9 24422305 24422327 -93440300 + AT_rich Low_complexity Low_complexity 1 22 0 2201 97 0 3 chr9 24424422 24424712 -93437915 + AluSc SINE Alu 2 290 -19 1862 137 11 0 chr9 24425182 24425453 -93437174 + AluSg SINE Alu 1 274 -36 414 0 0 0 chr9 24425455 24425501 -93437126 + (TA)n Simple_repeat Simple_repeat 1 46 0 189 0 0 0 chr9 24425500 24425521 -93437106 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 219 219 41 14 chr9 24426517 24426590 -93436037 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 522 286 55 35 chr9 24426725 24426924 -93435703 - MIR SINE MIR -10 252 50 2627 204 19 51 chr9 24427302 24427983 -93434644 - L1MA9 LINE L1 -38 6274 5616 * 4186 199 29 8 chr9 24427981 24429140 -93433487 + L1MA9 LINE L1 4424 5603 -709 24 0 0 0 chr9 24429586 24429610 -93433017 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr9 24430061 24430092 -93432535 + AT_rich Low_complexity Low_complexity 1 31 0 257 319 6 39 chr9 24430948 24431147 -93431480 - L1ME LINE L1 -380 5784 5589 303 200 52 58 chr9 24431240 24431395 -93431232 + MER96B DNA MER1_type? 193 346 -71 25 0 0 0 chr9 24431406 24431431 -93431196 + AT_rich Low_complexity Low_complexity 1 25 0 353 242 160 62 chr9 24431550 24431794 -93430833 - L1ME LINE L1 -343 5821 5554 7667 24 0 0 chr9 24431796 24432920 -93429707 + L1PA4 LINE L1 5016 6155 0 788 300 146 30 chr9 24432979 24433512 -93429115 + MLT1G1 LTR MaLR 1 595 0 1936 156 36 0 chr9 24434775 24435140 -93427487 + L1MA3 LINE L1 5927 6304 -1 8826 212 67 68 chr9 24435153 24440637 -93421990 - L1MC2 LINE L1 -62 6562 1094 246 62 0 0 chr9 24440637 24440669 -93421958 + (TA)n Simple_repeat Simple_repeat 2 33 0 8826 212 67 68 chr9 24440669 24441757 -93420870 - L1MC2 LINE L1 -5530 1094 6 5854 98 23 6 chr9 24441776 24443231 -93419396 - L1PA11 LINE L1 -3 6171 4692 1519 245 25 18 chr9 24443236 24443632 -93418995 - L1MD2 LINE L1 -12 6347 5949 255 61 0 0 chr9 24443757 24443790 -93418837 + (TA)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr9 24443790 24443814 -93418813 + (TG)n Simple_repeat Simple_repeat 2 25 0 1640 151 93 0 chr9 24443913 24444191 -93418436 + AluSx SINE Alu 2 305 -7 2338 90 3 0 chr9 24444690 24445000 -93417627 + AluSp SINE Alu 1 311 -2 2051 118 3 3 chr9 24445015 24445304 -93417323 + AluSg SINE Alu 6 294 -16 269 306 143 0 chr9 24447054 24447152 -93415475 - MIR SINE MIR 0 262 151 372 296 20 0 chr9 24447188 24447286 -93415341 + Charlie1 DNA MER1_type 38 137 -2624 1223 231 84 30 chr9 24447314 24447751 -93414876 + Charlie1 DNA MER1_type 2229 2698 -63 1778 189 0 6 chr9 24447751 24448063 -93414564 - AluJb SINE Alu -2 310 1 1223 231 84 30 chr9 24448063 24448127 -93414500 + Charlie1 DNA MER1_type 2698 2757 -4 2208 81 34 0 chr9 24448156 24448331 -93414296 - AluY SINE Alu -5 306 115 207 0 0 0 chr9 24448331 24448354 -93414273 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2208 81 34 0 chr9 24448354 24448474 -93414153 - AluY SINE Alu -196 115 1 1037 299 149 39 chr9 24448818 24449356 -93413271 + L1MA5 LINE L1 141 737 -6472 3718 255 35 19 chr9 24449493 24450620 -93412007 + L1MA5 LINE L1 1731 2874 -4335 5212 173 31 8 chr9 24450647 24452585 -93410042 + L1MA5 LINE L1 5378 7360 -2 2610 248 67 17 chr9 24452646 24453573 -93409054 + L1ME2 LINE L1 5194 6164 0 301 228 89 41 chr9 24453711 24453834 -93408793 + L1MC5 LINE L1 7784 7912 -49 201 310 70 20 chr9 24454256 24454356 -93408271 - MIR SINE MIR -102 106 1 305 327 0 47 chr9 24456305 24456412 -93406215 - MIR SINE MIR -140 122 21 249 244 44 22 chr9 24456495 24456585 -93406042 + L1MC4 LINE L1 6614 6705 -1337 216 163 0 0 chr9 24456603 24456646 -93405981 + (TA)n Simple_repeat Simple_repeat 2 44 0 228 211 0 0 chr9 24456693 24456750 -93405877 + L1MC4 LINE L1 6653 6709 -1333 495 304 77 32 chr9 24456790 24457010 -93405617 + MIR SINE MIR 21 250 -12 406 269 67 0 chr9 24457139 24457243 -93405384 - MIR SINE MIR -42 220 110 213 65 0 0 chr9 24458842 24458873 -93403754 + (TC)n Simple_repeat Simple_repeat 2 32 0 214 205 0 0 chr9 24459388 24459427 -93403200 + (TAA)n Simple_repeat Simple_repeat 3 41 0 1556 206 25 8 chr9 24462070 24462435 -93400192 - L1MB2 LINE L1 -9 6162 5792 3657 100 8 16 chr9 24462437 24463042 -93399585 + L1MB2 LINE L1 5177 5775 -388 9863 150 45 49 chr9 24463042 24464250 -93398377 + L1P3 LINE L1 10 1264 -5197 189 0 0 0 chr9 24464250 24464271 -93398356 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9863 150 45 49 chr9 24464271 24465427 -93397200 + L1P3 LINE L1 1264 2423 -4038 2205 64 4 0 chr9 24465425 24465705 -93396922 + L1PA8A LINE L1 5419 5699 -432 * 947 187 65 32 chr9 24465707 24465953 -93396674 + L1MCa LINE L1 78 331 -6095 1629 166 13 0 chr9 24465973 24466275 -93396352 + L1MCa LINE L1 841 1146 -5280 * 2450 256 60 8 chr9 24466274 24467160 -93395467 + L1MB7 LINE L1 2639 3570 -2576 1589 127 8 93 chr9 24467162 24467539 -93395088 - MER4A LTR ERV1 0 664 261 556 143 10 10 chr9 24467539 24467637 -93394990 - MER4A LTR ERV1 -566 98 1 2061 250 19 30 chr9 24467644 24468269 -93394358 + L1MB7 LINE L1 3576 4193 -1953 1058 208 21 4 chr9 24468272 24468513 -93394114 + L1MC1 LINE L1 6080 6324 -9 2204 235 75 92 chr9 24468531 24468861 -93393766 + L1MB1 LINE L1 3521 3855 -2291 625 238 52 47 chr9 24468861 24469033 -93393594 + FAM SINE Alu 1 173 -2 2204 235 75 92 chr9 24469033 24469165 -93393462 + L1MB1 LINE L1 3855 3988 -2158 1789 175 17 0 chr9 24469165 24469462 -93393165 + AluSx SINE Alu 1 302 -10 2204 235 75 92 chr9 24469462 24470191 -93392436 + L1MB1 LINE L1 3988 4693 -1453 4581 182 17 13 chr9 24470292 24471198 -93391429 + L1MB1 LINE L1 5260 6168 0 1594 184 39 29 chr9 24471262 24471798 -93390829 + L1MB7 LINE L1 4989 5534 -650 2152 182 10 0 chr9 24471802 24472203 -93390424 - L1MB1 LINE L1 -208 5981 5577 543 140 9 65 chr9 24472207 24472314 -93390313 + LTR1B LTR ERV1 277 377 -449 2431 212 42 10 chr9 24472319 24472391 -93390236 + L1MB7 LINE L1 5544 5612 -572 4316 156 49 12 chr9 24472391 24473188 -93389439 + LTR1B LTR ERV1 1 826 0 2431 212 42 10 chr9 24473188 24473727 -93388900 + L1MB7 LINE L1 5612 6175 -9 23 86 0 0 chr9 24474029 24474087 -93388540 + AT_rich Low_complexity Low_complexity 1 58 0 340 359 0 0 chr9 24475626 24475729 -93386898 + MER5A DNA MER1_type 4 106 -83 239 347 0 0 chr9 24475778 24475850 -93386777 + (TATG)n Simple_repeat Simple_repeat 4 75 0 722 274 131 32 chr9 24476830 24477477 -93385150 - L1MEc LINE L1 -4398 1998 1288 2578 121 8 0 chr9 24477555 24477927 -93384700 + THE1C LTR MaLR 1 375 0 9465 132 49 8 chr9 24477927 24479444 -93383183 + THE1C-int LTR MaLR 1 1580 0 2268 141 28 0 chr9 24479444 24479806 -93382821 + THE1C LTR MaLR 1 372 -3 526 300 63 42 chr9 24479819 24480343 -93382284 - L1MEc LINE L1 -5370 1026 492 851 208 118 100 chr9 24483072 24483461 -93379166 + MSTD LTR MaLR 1 396 0 256 245 19 9 chr9 24485334 24485441 -93377186 - MIR3 SINE MIR -31 177 69 536 303 82 12 chr9 24486182 24486426 -93376201 + L3 LINE CR1 613 873 -704 464 303 87 40 chr9 24486643 24487013 -93375614 - L1MEc LINE L1 -3650 2776 2390 228 211 0 0 chr9 24487142 24487180 -93375447 + MER2 DNA MER2_type 2 39 -306 23086 61 9 1 chr9 24487205 24490179 -93372448 + L1PA4 LINE L1 3 3001 -3145 17872 36 2 1 chr9 24490280 24493231 -93369396 + L1PA4 LINE L1 3202 6153 -2 24 32 0 0 chr9 24493231 24493262 -93369365 + AT_rich Low_complexity Low_complexity 1 31 0 344 138 35 0 chr9 24493265 24493323 -93369304 + MER2 DNA MER2_type 214 273 -72 22 35 0 0 chr9 24493327 24493356 -93369271 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr9 24493364 24493392 -93369235 + (TA)n Simple_repeat Simple_repeat 1 28 0 1955 142 21 0 chr9 24493410 24493699 -93368928 - AluSx SINE Alu -17 295 1 367 219 0 0 chr9 24493702 24493766 -93368861 + MER2 DNA MER2_type 282 345 0 30 59 0 0 chr9 24493773 24493824 -93368803 + AT_rich Low_complexity Low_complexity 1 51 0 363 272 78 0 chr9 24494223 24494326 -93368301 + MIR SINE MIR 62 172 -90 274 311 47 26 chr9 24494473 24494666 -93367961 - L1MEc LINE L1 -4938 1669 1473 639 241 14 90 chr9 24495010 24495222 -93367405 - MIR SINE MIR -10 252 57 2224 107 7 0 chr9 24495224 24495532 -93367095 - AluSx SINE Alu 0 312 3 242 108 0 0 chr9 24495538 24495575 -93367052 + MLT1E3 LTR MaLR 588 624 0 235 297 177 18 chr9 24498927 24499092 -93363535 + MIR SINE MIR 28 220 -42 225 154 0 0 chr9 24499187 24499226 -93363401 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 238 158 61 114 chr9 24500178 24500292 -93362335 - L1ME4a LINE L1 -47 6074 5967 491 212 50 0 chr9 24500600 24500699 -93361928 + MSTB2 LTR MaLR 2 105 -352 1688 114 240 17 chr9 24500753 24501103 -93361524 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr9 24501346 24501368 -93361259 + AT_rich Low_complexity Low_complexity 1 22 0 225 301 53 26 chr9 24503767 24503880 -93358747 - L3b LINE CR1 -114 1469 1354 409 356 29 10 chr9 24504097 24504305 -93358322 - MIR SINE MIR -26 236 25 442 280 53 7 chr9 24504842 24504992 -93357635 - MIR SINE MIR -48 214 58 22 0 0 0 chr9 24505132 24505154 -93357473 + AT_rich Low_complexity Low_complexity 1 22 0 225 318 0 45 chr9 24507097 24507163 -93355464 - L2 LINE L2 -76 3196 3134 5011 158 61 7 chr9 24507397 24508342 -93354285 - L1MC1 LINE L1 -7 6326 5332 203 345 83 14 chr9 24508366 24508511 -93354116 - L2 LINE L2 -402 2912 2758 1029 277 120 11 chr9 24509706 24510471 -93352156 + L1M4 LINE L1 2636 3484 -2662 2330 223 47 94 chr9 24510570 24511527 -93351100 - L1MEc LINE L1 -5496 930 19 21 0 0 0 chr9 24511541 24511562 -93351065 + AT_rich Low_complexity Low_complexity 1 21 0 1821 127 0 4 chr9 24511616 24511883 -93350744 - AluSg SINE Alu -44 266 1 494 292 63 69 chr9 24511895 24512622 -93350005 + L1M4 LINE L1 3633 4354 -1792 4910 32 2 3 chr9 24512622 24513218 -93349409 + L1PA3 LINE L1 5561 6155 0 494 292 63 69 chr9 24513218 24513448 -93349179 + L1M4 LINE L1 4354 4584 -1562 466 322 7 0 chr9 24514230 24514379 -93348248 + MIR SINE MIR 76 225 -37 270 232 40 30 chr9 24514562 24514661 -93347966 - L1MC5 LINE L1 -34 7927 7828 5741 161 18 4 chr9 24514795 24515858 -93346769 - L1MA4 LINE L1 -5 6295 5210 3157 162 25 79 chr9 24515864 24516648 -93345979 - L1MA4 LINE L1 -1058 5088 4347 787 296 91 57 chr9 24516649 24517278 -93345349 + L2 LINE L2 2627 3302 -11 289 330 35 9 chr9 24517527 24517642 -93344985 + LTR33 LTR ERVL 28 145 -376 254 333 187 27 chr9 24517710 24517935 -93344692 + LTR33 LTR ERVL 260 520 -1 211 276 35 17 chr9 24517975 24518033 -93344594 - L2 LINE L2 -4 3268 3210 236 156 44 0 chr9 24518255 24518300 -93344327 + (CATA)n Simple_repeat Simple_repeat 2 48 0 464 288 77 64 chr9 24518537 24518770 -93343857 + MIR SINE MIR 25 260 -2 24 0 0 0 chr9 24518963 24518987 -93343640 + AT_rich Low_complexity Low_complexity 1 24 0 2192 114 0 0 chr9 24518991 24519290 -93343337 - AluSx SINE Alu -13 299 1 341 304 56 24 chr9 24520361 24520486 -93342141 + MIR3 SINE MIR 14 142 -66 23 54 0 0 chr9 24520877 24520914 -93341713 + AT_rich Low_complexity Low_complexity 1 37 0 853 237 107 67 chr9 24521459 24521834 -93340793 - MLT1B LTR MaLR 0 390 1 24 53 0 0 chr9 24521874 24521912 -93340715 + AT_rich Low_complexity Low_complexity 1 38 0 223 188 16 16 chr9 24521919 24521983 -93340644 + (TA)n Simple_repeat Simple_repeat 1 64 0 1734 180 55 17 chr9 24524193 24524554 -93338073 - THE1C LTR MaLR 0 375 1 9392 124 42 30 chr9 24524554 24526114 -93336513 - THE1C-int LTR MaLR 0 1580 1 1764 159 48 40 chr9 24526114 24526486 -93336141 - THE1C LTR MaLR 0 375 1 2364 215 75 19 chr9 24526521 24527135 -93335492 + LTR48 LTR ERV1 1 648 -139 6883 119 7 12 chr9 24527217 24528437 -93334190 - L1MA1 LINE L1 -7 6295 5083 * 9294 186 19 39 chr9 24528432 24530562 -93332065 - L1MA1 LINE L1 -1665 4481 2395 304 314 29 54 chr9 24531284 24531526 -93331101 + L1MC4a LINE L1 5727 5962 -1846 2365 139 16 0 chr9 24531613 24531980 -93330647 - THE1C LTR MaLR -2 373 1 9263 130 58 9 chr9 24531980 24533486 -93329141 - THE1C-int LTR MaLR 0 1580 1 1462 164 48 77 chr9 24533486 24533941 -93328686 - THE1C LTR MaLR 0 375 1 906 280 153 4 chr9 24534102 24534631 -93327996 + L1M4 LINE L1 4460 5067 -1079 240 303 15 0 chr9 24534829 24534895 -93327732 + L1ME3A LINE L1 36 102 -6294 845 289 37 54 chr9 24535012 24535420 -93327207 + L1ME3A LINE L1 160 560 -5836 311 190 0 107 chr9 24535480 24535601 -93327026 + L1ME3A LINE L1 2177 2284 -4112 1293 296 133 33 chr9 24535724 24537051 -93325576 + L1ME3A LINE L1 4073 5671 -568 5645 81 5 15 chr9 24537051 24537842 -93324785 + L1PA8 LINE L1 5386 6168 -4 1293 296 133 33 chr9 24537842 24538473 -93324154 + L1ME3A LINE L1 5671 6237 -2 4129 168 44 14 chr9 24538564 24539813 -93322814 + L1MA6 LINE L1 4803 6079 -221 1945 142 3 7 chr9 24539907 24540210 -93322417 + AluSc SINE Alu 1 302 -7 199 391 45 18 chr9 24540545 24540655 -93321972 + L2 LINE L2 3158 3270 -2 23 0 0 0 chr9 24540919 24540942 -93321685 + AT_rich Low_complexity Low_complexity 1 23 0 231 361 113 38 chr9 24541031 24541164 -93321463 + MIR3 SINE MIR 30 172 -36 240 262 71 60 chr9 24541189 24541372 -93321255 - MER112 DNA MER1_type -45 215 31 391 292 55 72 chr9 24542399 24542745 -93319882 + HAL1 LINE L1 1314 1653 -854 320 258 121 40 chr9 24542955 24543079 -93319548 - MLT1J LTR MaLR -3 508 375 23 78 0 0 chr9 24543079 24543130 -93319497 + AT_rich Low_complexity Low_complexity 1 51 0 311 354 29 0 chr9 24543491 24543666 -93318961 - HAL1 LINE L1 -853 1654 1475 2867 0 0 0 chr9 24544098 24544409 -93318218 + AluYa5 SINE Alu 1 311 0 22 80 0 0 chr9 24545183 24545233 -93317394 + AT_rich Low_complexity Low_complexity 1 50 0 1111 133 0 0 chr9 24545397 24545563 -93317064 - AluSg/x SINE Alu -11 301 136 21 0 0 0 chr9 24545701 24545722 -93316905 + AT_rich Low_complexity Low_complexity 1 21 0 2454 58 7 0 chr9 24546909 24547218 -93315409 - AluY SINE Alu 0 311 1 1479 136 4 43 chr9 24547512 24547769 -93314858 - AluSg/x SINE Alu 0 312 66 738 323 74 35 chr9 24547770 24548396 -93314231 + L2 LINE L2 1771 3305 -8 260 282 146 0 chr9 24550934 24551037 -93311590 - L2 LINE L2 -4 3309 3192 2150 106 109 6 chr9 24552545 24552875 -93309752 + THE1B LTR MaLR 1 364 0 605 344 82 20 chr9 24553344 24553692 -93308935 - HAL1 LINE L1 -1314 1193 817 11107 90 20 0 chr9 24553692 24556059 -93306568 + L1PA7 LINE L1 3760 6153 -1 605 344 82 20 chr9 24556059 24556102 -93306525 - HAL1 LINE L1 -1690 817 778 263 255 38 71 chr9 24556112 24556296 -93306331 + L1MC4a LINE L1 4108 4285 -1861 586 281 28 65 chr9 24556486 24557442 -93305185 + L1MC4a LINE L1 4563 5476 -749 661 265 54 38 chr9 24557530 24557847 -93304780 + L1MC4a LINE L1 5612 5933 -1875 2224 228 113 51 chr9 24557859 24558784 -93303843 - LTR28 LTR ERV1 0 1229 1 304 291 30 91 chr9 24558816 24558981 -93303646 + L1MC4a LINE L1 5937 6091 -1717 2070 119 0 3 chr9 24560122 24560442 -93302185 + AluSx SINE Alu 1 319 0 270 348 43 21 chr9 24560569 24560710 -93301917 - MER5A DNA MER1_type -38 151 8 243 274 16 0 chr9 24561358 24561420 -93301207 + L2 LINE L2 3204 3266 -6 32 57 0 0 chr9 24561431 24561484 -93301143 + AT_rich Low_complexity Low_complexity 1 53 0 367 320 33 20 chr9 24561581 24561734 -93300893 + MIR SINE MIR 35 189 -73 304 280 67 13 chr9 24562140 24562290 -93300337 - L1MA10 LINE L1 -8 6326 6169 17114 183 42 5 chr9 24562462 24565733 -93296894 - L1 LINE L1 -3855 3710 319 4134 162 13 3 chr9 24565750 24566448 -93296179 + MER50 LTR ERV1 7 711 -23 1291 214 43 4 chr9 24566449 24566725 -93295902 - L1 LINE L1 -7260 305 19 473 171 74 30 chr9 24566725 24566873 -93295754 + LTR48 LTR ERV1 435 542 0 259 264 233 6 chr9 24566953 24567112 -93295515 + MIR SINE MIR 68 262 0 21 0 0 0 chr9 24567279 24567300 -93295327 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr9 24568327 24568354 -93294273 + AT_rich Low_complexity Low_complexity 1 27 0 481 278 112 6 chr9 24568756 24568925 -93293702 + MIR SINE MIR 70 256 -6 2210 187 52 41 chr9 24569374 24569915 -93292712 + L1MC3 LINE L1 7238 7784 -1 2030 201 36 27 chr9 24570171 24570609 -93292018 + MLT2B1 LTR ERVL 1 442 -78 1563 207 6 13 chr9 24570611 24570925 -93291702 - AluJo SINE Alu 0 312 1 284 0 28 0 chr9 24570947 24570983 -93291644 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 360 0 0 0 chr9 24570982 24571022 -93291605 + (TA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr9 24571023 24571057 -93291570 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 328 107 25 chr9 24571210 24571332 -93291295 + MIR SINE MIR 90 221 -41 229 300 122 0 chr9 24571629 24571719 -93290908 - L2 LINE L2 -3 3269 3169 380 227 82 0 chr9 24571774 24571884 -93290743 + L1MC4 LINE L1 5764 5882 -1926 6905 240 32 66 chr9 24571892 24573941 -93288686 + L1M2 LINE L1 4 1982 -4867 18370 168 42 45 chr9 24573945 24575736 -93286891 + L1 LINE L1 19 1814 -5751 233 127 0 95 chr9 24575736 24575799 -93286828 - LTR13 LTR ERVK -287 720 664 18370 168 42 45 chr9 24575799 24577748 -93284879 + L1 LINE L1 1814 3809 -3756 3105 197 20 22 chr9 24577849 24578559 -93284068 + L1 LINE L1 5861 6568 -997 2194 265 73 46 chr9 24578547 24579456 -93283171 + L1MC4 LINE L1 6738 7670 -372 * 464 174 22 201 chr9 24579508 24579732 -93282895 + L1MC4 LINE L1 7826 8009 -33 576 217 42 146 chr9 24580146 24580524 -93282103 - MER57A LTR ERV1 -2 401 63 242 258 20 93 chr9 24580610 24580722 -93281905 - MER103 DNA DNA -16 150 50 2272 90 0 10 chr9 24580722 24581022 -93281605 + AluY SINE Alu 1 297 -14 242 258 20 93 chr9 24581022 24581060 -93281567 - MER103 DNA DNA -116 50 11 266 239 84 0 chr9 24581222 24581293 -93281334 - LTR16A LTR ERVL -309 141 65 21 0 0 0 chr9 24582311 24582332 -93280295 + AT_rich Low_complexity Low_complexity 1 21 0 250 280 68 23 chr9 24583379 24583511 -93279116 + MIR SINE MIR 107 244 -18 264 122 0 0 chr9 24583574 24583615 -93279012 + (ATG)n Simple_repeat Simple_repeat 1 41 0 423 298 40 16 chr9 24583687 24583811 -93278816 + MIR3 SINE MIR 53 179 -29 2091 83 7 14 chr9 24583916 24584194 -93278433 - AluSg SINE Alu 0 310 35 21 0 0 0 chr9 24584775 24584796 -93277831 + AT_rich Low_complexity Low_complexity 1 21 0 366 167 69 0 chr9 24585165 24585237 -93277390 + Charlie5 DNA MER1_type 30 106 -2506 239 290 32 0 chr9 24585271 24585333 -93277294 - MIR SINE MIR -66 142 79 489 47 0 0 chr9 24585383 24585447 -93277180 + (GA)n Simple_repeat Simple_repeat 1 64 0 1408 149 68 4 chr9 24585449 24585697 -93276930 - MLT2D LTR ERVL -150 264 1 28 48 0 0 chr9 24587668 24587710 -93274917 + AT_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr9 24587876 24587916 -93274711 + AT_rich Low_complexity Low_complexity 1 40 0 359 372 37 18 chr9 24588004 24588222 -93274405 - MIR SINE MIR -19 243 22 225 258 31 113 chr9 24588447 24588544 -93274083 + L2 LINE L2 3224 3312 -1 1709 186 4 0 chr9 24589653 24589933 -93272694 - AluJo SINE Alu -31 281 1 252 282 118 30 chr9 24591556 24591861 -93270766 + HAL1b LINE L1 309 640 -708 27 0 0 0 chr9 24591901 24591928 -93270699 + AT_rich Low_complexity Low_complexity 1 27 0 368 306 18 96 chr9 24592198 24592588 -93270039 - MLT1H LTR MaLR -185 364 31 22 0 0 0 chr9 24592699 24592721 -93269906 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 24592763 24592798 -93269829 + AT_rich Low_complexity Low_complexity 1 35 0 747 170 0 0 chr9 24592809 24592921 -93269706 + FLAM_A SINE Alu 1 112 -30 410 343 47 33 chr9 24592958 24593410 -93269217 + L1M4 LINE L1 2131 2588 -3558 1065 318 24 37 chr9 24593557 24594020 -93268607 - MER90 LTR ERV1 -31 544 88 1932 215 64 52 chr9 24594078 24594637 -93267990 + MLT1F1 LTR MaLR 2 567 0 367 256 70 63 chr9 24594806 24595076 -93267551 + L1MC4 LINE L1 7769 8040 -2 752 271 104 38 chr9 24595103 24595624 -93267003 + L1ME4a LINE L1 5563 6117 -4 29 0 0 0 chr9 24595646 24595675 -93266952 + AT_rich Low_complexity Low_complexity 1 29 0 574 78 11 11 chr9 24597002 24597092 -93265535 + (TAGA)n Simple_repeat Simple_repeat 3 92 0 25 51 0 0 chr9 24597296 24597335 -93265292 + AT_rich Low_complexity Low_complexity 1 39 0 254 331 151 6 chr9 24597490 24597656 -93264971 + MIR SINE MIR 60 249 -13 5423 107 13 0 chr9 24598127 24598919 -93263708 - L1P LINE L1 -3741 2405 1604 548 211 31 8 chr9 24599535 24599663 -93262964 - MER103 DNA DNA -10 156 26 288 267 0 0 chr9 24600060 24600191 -93262436 + (TA)n Simple_repeat Simple_repeat 2 132 0 699 262 218 29 chr9 24600430 24600839 -93261788 - MLT1H LTR MaLR -17 532 47 354 138 0 0 chr9 24603745 24603803 -93258824 + (CA)n Simple_repeat Simple_repeat 1 58 0 232 330 11 33 chr9 24604451 24604542 -93258085 - L2 LINE L2 -18 3295 3207 656 320 181 18 chr9 24604596 24605013 -93257614 - L2 LINE L2 -216 3097 2601 1432 138 96 4 chr9 24605014 24605253 -93257374 + AluSq SINE Alu 9 269 -44 330 241 199 16 chr9 24605262 24605453 -93257174 - L2 LINE L2 -696 2618 2393 303 236 49 62 chr9 24605858 24606002 -93256625 + L1MC/D LINE L1 5347 5488 -2320 339 277 92 15 chr9 24606642 24606772 -93255855 - MER5A DNA MER1_type -8 181 42 214 183 33 17 chr9 24607043 24607103 -93255524 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 583 365 4 9 chr9 24607916 24608146 -93254481 - MIR SINE MIR 0 262 34 21 0 0 0 chr9 24608182 24608203 -93254424 + AT_rich Low_complexity Low_complexity 1 21 0 229 171 0 0 chr9 24608409 24608450 -93254177 + L2 LINE L2 3261 3301 -12 1846 171 0 3 chr9 24608876 24609169 -93253458 - AluSx SINE Alu -20 292 1 23 0 0 0 chr9 24609280 24609303 -93253324 + AT_rich Low_complexity Low_complexity 1 23 0 193 286 101 79 chr9 24609563 24609741 -93252886 + MER5A DNA MER1_type 8 189 0 2698 152 8 2 chr9 24610632 24611112 -93251515 + L1MA4A LINE L1 5821 6303 0 821 281 31 4 chr9 24611673 24611901 -93250726 + MIR SINE MIR 28 261 -1 21 82 0 0 chr9 24612273 24612322 -93250305 + AT_rich Low_complexity Low_complexity 1 49 0 459 347 53 11 chr9 24613924 24614114 -93248513 + MIR SINE MIR 62 259 -3 195 69 0 0 chr9 24614767 24614796 -93247831 + (A)n Simple_repeat Simple_repeat 1 29 0 1248 241 64 60 chr9 24617406 24617921 -93244706 + MLT2B1 LTR ERVL 1 517 -3 1679 99 59 131 chr9 24618179 24618583 -93244044 - THE1C LTR MaLR 0 375 1 2572 202 72 2 chr9 24618796 24619312 -93243315 + MER68 LTR ERV1 1 552 -10 330 310 35 97 chr9 24620373 24620683 -93241944 + HAL1 LINE L1 512 802 -1705 726 239 22 45 chr9 24621109 24621377 -93241250 + L1MA9 LINE L1 6026 6287 -25 570 256 35 20 chr9 24621376 24621575 -93241052 + HAL1 LINE L1 1243 1444 -1063 * 844 133 0 0 chr9 24621597 24621717 -93240910 + AluJb SINE Alu 25 144 -168 557 183 0 17 chr9 24621717 24621832 -93240795 + AluY SINE Alu 192 304 -7 1707 280 62 34 chr9 24621855 24622583 -93240044 + HAL1 LINE L1 1455 2214 -293 339 78 0 0 chr9 24622583 24622634 -93239993 + (TG)n Simple_repeat Simple_repeat 2 52 0 1707 280 62 34 chr9 24622634 24622798 -93239829 + HAL1 LINE L1 2214 2372 -135 486 282 84 27 chr9 24623241 24623503 -93239124 + L2 LINE L2 1826 2102 -1212 350 173 40 27 chr9 24623507 24623582 -93239045 - MER58B DNA MER1_type 0 341 266 314 294 0 0 chr9 24623714 24623782 -93238845 - MER58B DNA MER1_type -273 68 1 1021 290 23 7 chr9 24623789 24624089 -93238538 + L2 LINE L2 2110 2414 -900 1275 273 42 15 chr9 24624110 24624516 -93238111 - LTR16C LTR ERVL -3 488 72 1105 261 99 79 chr9 24624574 24625041 -93237586 + L2 LINE L2 2553 3041 -272 1958 144 13 7 chr9 24625041 24625346 -93237281 - AluSx SINE Alu -5 307 1 1105 261 99 79 chr9 24625346 24625624 -93237003 + L2 LINE L2 3041 3312 -1 194 0 39 0 chr9 24626444 24626470 -93236157 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 649 174 0 47 chr9 24626470 24626513 -93236114 - L1MB1 LINE L1 -5 6163 6120 1722 176 25 0 chr9 24626513 24626797 -93235830 - AluJb SINE Alu -20 292 2 649 174 0 47 chr9 24626797 24626902 -93235725 - L1MB1 LINE L1 -48 6120 6022 396 326 25 41 chr9 24627884 24628080 -93234547 + L2 LINE L2 2290 2482 -832 33 25 0 0 chr9 24628093 24628133 -93234494 + AT_rich Low_complexity Low_complexity 1 40 0 259 303 37 21 chr9 24629631 24629819 -93232808 - L1MB1 LINE L1 -240 5881 5691 495 203 68 0 chr9 24629846 24629964 -93232663 + L1MC4 LINE L1 7914 8039 -3 2572 53 0 0 chr9 24630359 24630663 -93231964 - AluY SINE Alu -7 304 1 305 321 53 63 chr9 24630731 24630921 -93231706 - MIR3 SINE MIR -1 207 20 1828 144 76 17 chr9 24630941 24631295 -93231332 + THE1C LTR MaLR 1 375 0 240 295 39 101 chr9 24631558 24631687 -93230940 - L2 LINE L2 -9 3304 3184 2226 23 0 0 chr9 24633396 24633655 -93228972 - L1PA3 LINE L1 0 6155 5897 239 269 0 19 chr9 24633719 24633771 -93228856 - L2 LINE L2 -12 3260 3210 326 321 45 15 chr9 24633774 24633908 -93228719 - MIR SINE MIR -118 144 7 382 304 0 17 chr9 24635544 24635659 -93226968 - MIR SINE MIR -97 165 53 180 111 0 0 chr9 24637318 24637345 -93225282 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2041 104 74 0 chr9 24637347 24637673 -93224954 - L1PA11 LINE L1 -11 6163 5814 2230 71 6 74 chr9 24637673 24638020 -93224607 - L1PA7 LINE L1 0 6154 5827 17518 112 4 10 chr9 24638021 24641257 -93221370 - L1PA7 LINE L1 -244 6225 3008 12834 102 6 19 chr9 24641253 24643302 -93219325 - L1PA7 LINE L1 -4416 2045 2 * 2008 143 153 8 chr9 24643426 24643798 -93218829 - MSTA LTR MaLR -2 426 1 22 35 0 0 chr9 24645203 24645232 -93217395 + AT_rich Low_complexity Low_complexity 1 29 0 286 283 178 67 chr9 24645462 24645642 -93216985 + MIR SINE MIR 49 248 -14 24 32 0 0 chr9 24645845 24645876 -93216751 + AT_rich Low_complexity Low_complexity 1 31 0 236 311 97 29 chr9 24646716 24646819 -93215808 + L2 LINE L2 3102 3211 -61 470 216 84 26 chr9 24646972 24647127 -93215500 + L1P5 LINE L1 5499 5669 -482 566 253 63 17 chr9 24647156 24647393 -93215234 - L1M4 LINE L1 -2591 4617 4370 1864 157 11 0 chr9 24647444 24647731 -93214896 - AluSx SINE Alu -22 290 1 5293 154 28 13 chr9 24647750 24648724 -93213903 - L1MA4 LINE L1 -5 6997 6010 2028 202 20 11 chr9 24648717 24649177 -93213450 - L1MA4 LINE L1 -1842 5006 4543 * 4952 233 65 11 chr9 24649280 24650713 -93211914 - L1MA4 LINE L1 -4522 2327 816 611 310 72 30 chr9 24650720 24651008 -93211619 - L1M4 LINE L1 -5487 1722 1237 29 28 0 0 chr9 24651048 24651084 -93211543 + AT_rich Low_complexity Low_complexity 1 36 0 1044 246 74 26 chr9 24651204 24651634 -93210993 - L1M4 LINE L1 -3141 3005 2555 202 281 114 44 chr9 24652714 24652828 -93209799 - L2 LINE L2 0 3313 3192 1827 146 7 23 chr9 24653586 24653888 -93208739 - AluJb SINE Alu -15 297 1 617 320 86 5 chr9 24654033 24654255 -93208372 - MIR SINE MIR 0 262 23 996 176 143 52 chr9 24654455 24654545 -93208082 + AluJb SINE Alu 1 81 -221 306 0 0 0 chr9 24654545 24654579 -93208048 + (CA)n Simple_repeat Simple_repeat 1 34 0 996 176 143 52 chr9 24654579 24654760 -93207867 + AluJb SINE Alu 81 297 -5 440 238 86 27 chr9 24654940 24655119 -93207508 - L1MA10 LINE L1 0 6170 5980 2121 211 119 27 chr9 24655195 24655859 -93206768 - MER50 LTR ERV1 0 734 10 2006 199 58 40 chr9 24655876 24656433 -93206194 - L1ME2 LINE L1 -169 5995 5429 545 122 0 71 chr9 24656741 24656839 -93205788 - MSTB1 LTR MaLR -341 91 1 198 71 0 0 chr9 24656861 24656889 -93205738 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 22 80 0 0 chr9 24657920 24657970 -93204657 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr9 24659841 24659869 -93202758 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr9 24659880 24659909 -93202718 + AT_rich Low_complexity Low_complexity 1 29 0 2139 127 0 0 chr9 24660121 24660429 -93202198 - AluSg SINE Alu -2 308 1 1352 202 18 57 chr9 24660456 24660792 -93201835 + LTR8A LTR ERV1 402 724 -3 235 310 14 0 chr9 24660932 24661003 -93201624 + MIR SINE MIR 164 235 -27 236 143 29 29 chr9 24661677 24661747 -93200880 + L1ME4a LINE L1 6047 6116 -5 7963 74 16 14 chr9 24662633 24663222 -93199405 - L1P LINE L1 -2101 4045 3452 2854 3 0 0 chr9 24663222 24663533 -93199094 + AluYb8 SINE Alu 1 311 -7 7963 74 16 14 chr9 24663533 24664088 -93198539 - L1P LINE L1 -2694 3452 2899 2405 90 0 0 chr9 24664088 24664399 -93198228 - AluY SINE Alu 0 311 1 6542 72 12 3 chr9 24664412 24665813 -93196814 + L1PA7 LINE L1 4738 6149 -5 417 312 98 33 chr9 24667015 24667230 -93195397 + MIR SINE MIR 18 246 -16 2068 189 54 11 chr9 24668428 24669301 -93193326 + LTR28 LTR ERV1 1 1019 -1 628 269 47 2 chr9 24669529 24669724 -93192903 + MIR SINE MIR 32 238 -24 595 222 6 62 chr9 24670555 24670717 -93191910 + MER5A DNA MER1_type 36 188 -1 1571 191 31 14 chr9 24670773 24671123 -93191504 + L1MA9 LINE L1 5782 6137 -175 1292 115 0 0 chr9 24671123 24671305 -93191322 - AluSg/x SINE Alu -1 311 130 653 100 91 0 chr9 24671311 24671421 -93191206 + L1MA9 LINE L1 6184 6303 -9 22 35 0 0 chr9 24672308 24672337 -93190290 + AT_rich Low_complexity Low_complexity 1 29 0 1522 199 6 29 chr9 24672648 24672959 -93189668 + AluJo SINE Alu 1 304 -8 233 304 36 22 chr9 24673289 24673427 -93189200 - HAL1b LINE L1 -341 1007 868 * 624 164 86 125 chr9 24673423 24673703 -93188924 - L1MC5 LINE L1 -1002 6959 6691 21 57 0 0 chr9 24673719 24673754 -93188873 + AT_rich Low_complexity Low_complexity 1 35 0 951 161 11 33 chr9 24674045 24674225 -93188402 - AluSg/x SINE Alu 0 312 137 315 257 20 118 chr9 24674304 24674456 -93188171 - L2 LINE L2 -2 3311 3175 25 0 0 0 chr9 24674801 24674826 -93187801 + AT_rich Low_complexity Low_complexity 1 25 0 297 397 38 5 chr9 24675322 24675506 -93187121 - MIR SINE MIR -62 200 11 247 281 46 72 chr9 24675746 24675899 -93186728 - HAL1 LINE L1 -1134 1373 1225 213 150 0 25 chr9 24676112 24676152 -93186475 + (TTC)n Simple_repeat Simple_repeat 2 40 0 449 245 48 20 chr9 24676723 24676870 -93185757 - LTR33 LTR ERVL -2 519 369 252 0 0 0 chr9 24677277 24677305 -93185322 + (TG)n Simple_repeat Simple_repeat 2 29 0 870 304 9 69 chr9 24677747 24678210 -93184417 + L2 LINE L2 2879 3313 0 2142 153 89 0 chr9 24678846 24679239 -93183388 + MSTA LTR MaLR 1 428 0 241 345 91 0 chr9 24679279 24679389 -93183238 + MER91C DNA MER1_type 10 129 -11 276 207 122 24 chr9 24680080 24680162 -93182465 + L1MA10 LINE L1 5853 5942 -247 804 249 0 0 chr9 24680170 24680347 -93182280 + FRAM SINE Alu 1 176 0 1369 215 76 39 chr9 24680347 24680729 -93181898 + L1MA10 LINE L1 5938 6333 -1 251 206 59 88 chr9 24682366 24682468 -93180159 - L3 LINE CR1 -820 757 659 2421 79 0 0 chr9 24682655 24682960 -93179667 + AluY SINE Alu 1 305 -6 360 293 51 37 chr9 24683175 24683362 -93179265 - MIR SINE MIR -62 146 8 210 71 0 0 chr9 24683892 24683920 -93178707 + (A)n Simple_repeat Simple_repeat 1 28 0 241 188 21 0 chr9 24684493 24684541 -93178086 + A-rich Low_complexity Low_complexity 2 50 0 635 226 6 28 chr9 24685265 24685442 -93177185 + L1ME4a LINE L1 5762 5934 -187 313 278 145 40 chr9 24686430 24686922 -93175705 + L1P LINE L1 1112 1952 -846 370 252 42 103 chr9 24688242 24688610 -93174017 + L1MEc LINE L1 2109 2413 -3802 202 75 38 57 chr9 24688614 24688667 -93173960 + (TA)n Simple_repeat Simple_repeat 2 53 0 1134 263 49 80 chr9 24688667 24689367 -93173260 + L1MEc LINE L1 2420 3097 -3118 303 245 122 45 chr9 24689393 24689638 -93172989 - L1M4 LINE L1 -2154 3992 3729 231 275 0 33 chr9 24689864 24689955 -93172672 - L1M4 LINE L1 -1304 4842 4755 1119 258 67 80 chr9 24689991 24690231 -93172396 - L1M4 LINE L1 -1608 4538 4296 2178 117 0 9 chr9 24690231 24690547 -93172080 - AluSq SINE Alu 0 313 1 1119 258 67 80 chr9 24690547 24691169 -93171458 - L1M4 LINE L1 -1850 4296 3687 221 214 55 41 chr9 24691923 24692068 -93170559 + (TTATA)n Simple_repeat Simple_repeat 1 147 0 1925 130 149 11 chr9 24692250 24692626 -93170001 - MSTA LTR MaLR 0 428 1 421 286 21 43 chr9 24696627 24696767 -93165860 - L2 LINE L2 0 3272 3136 475 298 44 24 chr9 24696807 24697012 -93165615 - L2 LINE L2 -882 2432 2224 494 350 6 0 chr9 24697255 24697432 -93165195 - MIR SINE MIR -7 255 78 551 202 24 0 chr9 24697565 24697820 -93164807 + (TA)n Simple_repeat Simple_repeat 1 261 0 183 395 55 0 chr9 24698139 24698248 -93164379 - MIR SINE MIR -78 130 16 270 0 0 0 chr9 24698250 24698280 -93164347 + (TG)n Simple_repeat Simple_repeat 1 30 0 284 263 17 85 chr9 24698930 24699048 -93163579 - MIR SINE MIR -46 216 107 1240 269 79 30 chr9 24699241 24699672 -93162955 - LTR16B LTR ERVL -12 452 1 263 301 130 0 chr9 24700228 24700365 -93162262 - MIR SINE MIR -27 181 34 23 68 0 0 chr9 24700694 24700738 -93161889 + AT_rich Low_complexity Low_complexity 1 44 0 180 0 0 0 chr9 24702828 24702848 -93159779 + (A)n Simple_repeat Simple_repeat 1 20 0 2725 118 49 5 chr9 24703186 24703611 -93159016 + MLT2A1 LTR ERVL 1 444 0 211 292 202 0 chr9 24703703 24703792 -93158835 - MIR SINE MIR 0 262 156 231 380 65 19 chr9 24704385 24704601 -93158026 - L2 LINE L2 -468 2846 2621 1388 129 0 0 chr9 24705016 24705210 -93157417 - AluSg/x SINE Alu -21 291 98 4765 58 28 0 chr9 24705640 24706247 -93156380 - L1PA7 LINE L1 -2 6152 5529 21 0 0 0 chr9 24706426 24706447 -93156180 + AT_rich Low_complexity Low_complexity 1 21 0 6446 171 56 39 chr9 24707071 24708349 -93154278 - HSMAR2 DNA Mariner -1 1301 2 283 306 28 19 chr9 24708485 24708593 -93154034 + GA-rich Low_complexity Low_complexity 3 111 0 287 331 25 38 chr9 24708794 24708954 -93153673 + MIR SINE MIR 103 260 -2 288 317 0 27 chr9 24709226 24709349 -93153278 + MER5A DNA MER1_type 3 111 -67 720 292 31 4 chr9 24709552 24709778 -93152849 + MIR SINE MIR 31 262 0 2520 136 82 17 chr9 24712779 24713241 -93149386 + LTR22B LTR ERVK 1 492 0 495 306 50 70 chr9 24713342 24713584 -93149043 - L3 LINE CR1 -161 1416 1180 1209 286 97 24 chr9 24715743 24717009 -93145618 + L1ME3A LINE L1 1656 3055 -3160 2819 12 0 19 chr9 24717018 24717342 -93145285 + AluYb8 SINE Alu 1 318 0 2088 170 80 15 chr9 24717434 24717823 -93144804 + MSTA LTR MaLR 15 428 0 8960 182 16 6 chr9 24717823 24719457 -93143170 + MSTA-int LTR MaLR 1 1650 -1 1866 165 86 34 chr9 24719458 24719865 -93142762 + MSTA LTR MaLR 1 428 0 559 263 46 18 chr9 24719867 24720194 -93142433 + L1ME3A LINE L1 3133 3468 -2747 294 29 0 0 chr9 24720326 24720361 -93142266 + (TG)n Simple_repeat Simple_repeat 2 36 0 747 297 62 27 chr9 24720391 24720906 -93141721 + L1ME3A LINE L1 3697 4229 -1986 2605 183 8 17 chr9 24721073 24721599 -93141028 + L1MB7 LINE L1 5643 6163 -21 1549 260 22 28 chr9 24721606 24722103 -93140524 + L1ME3A LINE L1 5486 5979 -260 2016 119 0 30 chr9 24722103 24722406 -93140221 + AluSg SINE Alu 1 294 -16 344 247 49 0 chr9 24722406 24722487 -93140140 + L1MC4 LINE L1 6619 6703 -1339 782 232 73 24 chr9 24722504 24722750 -93139877 + L1ME3A LINE L1 5977 6234 -5 235 302 163 20 chr9 24723002 24723204 -93139423 - L3 LINE CR1 -1146 431 201 7507 35 0 0 chr9 24723206 24724123 -93138504 + L1PA3 LINE L1 5236 6152 -3 22 0 0 0 chr9 24724123 24724145 -93138482 + AT_rich Low_complexity Low_complexity 1 22 0 2567 142 14 34 chr9 24724213 24724650 -93137977 - MSTC LTR MaLR 0 428 1 242 333 21 0 chr9 24724996 24725089 -93137538 - L3b LINE CR1 -145 1438 1344 523 279 85 18 chr9 24725272 24725489 -93137138 + MIR SINE MIR 32 262 0 373 132 0 15 chr9 24725931 24725999 -93136628 - L1MA6 LINE L1 -347 5953 5887 592 122 158 14 chr9 24726000 24726086 -93136541 + L1MA8 LINE L1 6130 6202 -89 393 22 0 0 chr9 24726086 24726132 -93136495 + (TATG)n Simple_repeat Simple_repeat 3 48 0 592 122 158 14 chr9 24726132 24726184 -93136443 + L1MA8 LINE L1 6202 6288 -3 667 164 62 88 chr9 24727130 24727347 -93135280 + MLT1A1 LTR MaLR 1 193 -172 668 205 0 8 chr9 24727551 24727678 -93134949 + MLT1A1 LTR MaLR 235 360 -5 307 325 103 34 chr9 24727696 24727930 -93134697 + MIR SINE MIR 7 256 -6 256 301 6 49 chr9 24729269 24729452 -93133175 + GA-rich Low_complexity Low_complexity 4 178 0 207 260 130 50 chr9 24729993 24730093 -93132534 - L2 LINE L2 -21 3292 3185 339 305 143 35 chr9 24730547 24730750 -93131877 - L2 LINE L2 -629 2685 2461 302 297 8 16 chr9 24730918 24731046 -93131581 + (TGAA)n Simple_repeat Simple_repeat 1 127 0 1614 170 45 3 chr9 24731329 24731664 -93130963 + L1MA8 LINE L1 5936 6284 -7 9178 102 57 18 chr9 24733588 24735430 -93127197 - L1PBa LINE L1 -4162 2701 637 1284 140 0 0 chr9 24735433 24735633 -93126994 - L1PBa LINE L1 -6663 200 1 383 206 134 0 chr9 24735668 24735765 -93126862 - MER53 DNA DNA -1 188 79 4517 147 49 43 chr9 24735985 24737041 -93125586 + L1PA16 LINE L1 4625 5683 -483 2493 74 0 0 chr9 24737041 24737351 -93125276 + AluY SINE Alu 1 310 -1 4517 147 49 43 chr9 24737351 24737818 -93124809 + L1PA16 LINE L1 5683 6145 -21 1990 135 12 4 chr9 24737898 24738315 -93124312 + L1M2 LINE L1 5023 5443 -743 265 184 0 0 chr9 24738460 24738509 -93124118 - L1 LINE L1 -2130 4016 3968 2785 214 15 71 chr9 24738512 24738772 -93123855 - L1P LINE L1 -3604 2542 2269 1865 151 0 0 chr9 24738772 24739043 -93123584 - AluSx SINE Alu -37 275 5 2785 214 15 71 chr9 24739043 24739586 -93123041 - L1P LINE L1 -3877 2269 1784 2726 256 81 42 chr9 24739923 24740470 -93122157 + L1M3b LINE L1 2079 2603 -4962 2212 112 0 0 chr9 24740470 24740764 -93121863 + AluSg SINE Alu 1 294 -16 297 0 0 0 chr9 24740764 24740797 -93121830 + (CAAG)n Simple_repeat Simple_repeat 2 34 0 2726 256 81 42 chr9 24740797 24740942 -93121685 + L1M3b LINE L1 2603 2741 -4824 369 0 0 0 chr9 24740942 24740983 -93121644 + (CA)n Simple_repeat Simple_repeat 2 42 0 2726 256 81 42 chr9 24740983 24741120 -93121507 + L1M3b LINE L1 2741 2871 -4694 180 0 0 0 chr9 24741120 24741140 -93121487 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2726 256 81 42 chr9 24741140 24742153 -93120474 + L1M3b LINE L1 2871 3901 -3664 3276 252 40 34 chr9 24742257 24743418 -93119209 - L1M4 LINE L1 -1118 5028 3860 2036 280 71 40 chr9 24743524 24744642 -93117985 + L1MEc LINE L1 485 1566 -4830 2117 123 45 31 chr9 24744642 24745001 -93117626 - THE1B LTR MaLR 0 364 1 10376 108 27 25 chr9 24745001 24745696 -93116931 - THE1B-int LTR MaLR 0 1580 888 2331 93 0 13 chr9 24745696 24746009 -93116618 - AluSp SINE Alu -4 309 1 10376 108 27 25 chr9 24746009 24746889 -93115738 - THE1B-int LTR MaLR -692 888 1 1689 131 134 27 chr9 24746889 24747218 -93115409 - THE1B LTR MaLR 0 364 1 2036 280 71 40 chr9 24747218 24747433 -93115194 + L1MEc LINE L1 1565 1862 -4534 438 229 44 49 chr9 24747476 24747659 -93114968 + L1M4 LINE L1 55 236 -6306 1600 234 110 39 chr9 24748245 24748484 -93114143 + L1M4 LINE L1 869 1090 -5556 2797 23 0 0 chr9 24748484 24748794 -93113833 + AluYa5 SINE Alu 1 310 -1 1600 234 110 39 chr9 24748794 24749542 -93113085 + L1M4 LINE L1 1090 1922 -4724 385 268 60 33 chr9 24749561 24749744 -93112883 + L1M4 LINE L1 4727 4914 -1730 1095 224 32 35 chr9 24749845 24750080 -93112547 + L1M3b LINE L1 4874 5109 -2456 192 40 0 0 chr9 24750080 24750105 -93112522 + (CAA)n Simple_repeat Simple_repeat 2 26 0 1095 224 32 35 chr9 24750105 24750209 -93112418 + L1M3b LINE L1 5109 5212 -2353 327 230 60 20 chr9 24750213 24750313 -93112314 - L2 LINE L2 -97 3216 3113 1370 239 18 12 chr9 24753046 24753377 -93109250 - MLT1A1 LTR MaLR -28 337 5 1626 174 44 4 chr9 24753507 24753782 -93108845 + AluJb SINE Alu 1 286 -26 188 298 81 48 chr9 24754311 24754435 -93108192 + MIR3 SINE MIR 4 131 -77 355 177 48 0 chr9 24756152 24756214 -93106413 - L2 LINE L2 0 3313 3249 375 41 0 0 chr9 24758299 24758348 -93104279 + (CA)n Simple_repeat Simple_repeat 2 50 0 1597 189 4 0 chr9 24758473 24758748 -93103879 + AluJo SINE Alu 1 276 -36 240 35 0 0 chr9 24758792 24758821 -93103806 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 250 343 94 21 chr9 24758999 24759232 -93103395 + L2 LINE L2 2812 3061 -211 891 180 6 12 chr9 24760020 24760181 -93102446 + THE1C LTR MaLR 1 160 -215 1437 88 0 10 chr9 24760181 24760375 -93102252 - AluY SINE Alu 0 311 120 1022 154 15 31 chr9 24760376 24760571 -93102056 + THE1C LTR MaLR 182 373 -2 9951 133 11 32 chr9 24760573 24762187 -93100440 + THE1C-int LTR MaLR 1 1580 0 2011 145 24 19 chr9 24762187 24762560 -93100067 + THE1C LTR MaLR 1 375 0 21 82 0 0 chr9 24762701 24762750 -93099877 + AT_rich Low_complexity Low_complexity 1 49 0 22 88 0 0 chr9 24762874 24762931 -93099696 + AT_rich Low_complexity Low_complexity 1 57 0 2675 166 79 13 chr9 24763118 24763305 -93099322 + L1PB4 LINE L1 5584 5757 -399 342 0 0 0 chr9 24763305 24763343 -93099284 + (CA)n Simple_repeat Simple_repeat 2 39 0 2675 166 79 13 chr9 24763343 24763686 -93098941 + L1PB4 LINE L1 5757 6149 -7 5228 116 4 13 chr9 24763763 24764043 -93098584 + L1MA2 LINE L1 5487 5768 -536 2175 128 0 0 chr9 24764043 24764347 -93098280 + AluSx SINE Alu 1 304 -8 5228 116 4 13 chr9 24764347 24764887 -93097740 + L1MA2 LINE L1 5768 6299 -5 21 36 0 0 chr9 24764887 24764915 -93097712 + AT_rich Low_complexity Low_complexity 1 28 0 869 201 6 0 chr9 24764936 24765095 -93097532 - AluY SINE Alu -20 291 132 256 188 0 62 chr9 24765256 24765320 -93097307 - LTR33A LTR ERVL -43 480 421 24 0 0 0 chr9 24765622 24765646 -93096981 + AT_rich Low_complexity Low_complexity 1 24 0 1067 269 94 17 chr9 24765666 24766167 -93096460 + MLT1G LTR MaLR 9 590 0 7986 66 3 11 chr9 24767346 24768374 -93094253 - MER11C LTR ERVK 0 1071 52 365 85 0 0 chr9 24768372 24768419 -93094208 + MER11B LTR ERVK 21 67 -1169 * 208 280 20 0 chr9 24768521 24768571 -93094056 - L2 LINE L2 -19 3253 3203 2186 125 3 3 chr9 24768582 24768895 -93093732 + AluSp SINE Alu 1 313 0 885 259 62 0 chr9 24769119 24769393 -93093234 + L1ME2 LINE L1 5832 6122 -42 388 325 138 33 chr9 24769676 24770103 -93092524 + L1M4 LINE L1 4892 5363 -783 461 254 8 8 chr9 24770426 24770544 -93092083 + L1MD3 LINE L1 6661 6778 -1217 8509 220 51 34 chr9 24770545 24771983 -93090644 + L1MA9 LINE L1 2977 4390 -3175 2367 90 0 0 chr9 24771983 24772283 -93090344 + AluY SINE Alu 1 300 -11 8509 220 51 34 chr9 24772283 24773849 -93088778 + L1MA9 LINE L1 4390 6056 -1509 4337 69 0 0 chr9 24773846 24774426 -93088201 - L1PA4 LINE L1 -4542 1604 1025 * 30827 36 3 0 chr9 24774425 24778988 -93083639 + L1PA4 LINE L1 1579 6152 -3 4778 197 54 10 chr9 24778985 24780098 -93082529 + L1MA9 LINE L1 6044 7249 -482 * 315 71 0 0 chr9 24780098 24780140 -93082487 + (CA)n Simple_repeat Simple_repeat 2 43 0 4778 197 54 10 chr9 24780140 24780646 -93081981 + L1MA9 LINE L1 7249 7731 0 261 267 75 32 chr9 24780643 24780830 -93081797 + L1MC5 LINE L1 7507 7701 -260 * 273 146 0 0 chr9 24780904 24780952 -93081675 + (TA)n Simple_repeat Simple_repeat 1 48 0 377 319 43 17 chr9 24782560 24782676 -93079951 + L2 LINE L2 3151 3269 -3 319 333 19 26 chr9 24782996 24783152 -93079475 + L2 LINE L2 2599 2753 -561 257 429 0 47 chr9 24783277 24783447 -93079180 + L2 LINE L2 2918 3079 -193 408 342 95 14 chr9 24783468 24783690 -93078937 + MIR SINE MIR 5 244 -18 231 360 112 0 chr9 24783765 24783854 -93078773 + L2 LINE L2 3133 3231 -41 1138 256 57 30 chr9 24784694 24785083 -93077544 + L1MCc LINE L1 3 738 -5684 4721 236 76 23 chr9 24785235 24785483 -93077144 + L1MCc LINE L1 2774 3007 -3934 2542 46 7 0 chr9 24785483 24785789 -93076838 + AluY SINE Alu 1 308 -3 4721 236 76 23 chr9 24785789 24787440 -93075187 + L1MCc LINE L1 3007 4743 -2198 1528 197 128 163 chr9 24787460 24787935 -93074692 + MLT2B3 LTR ERVL 1 510 -44 234 0 0 0 chr9 24787935 24787961 -93074666 + (TG)n Simple_repeat Simple_repeat 2 27 0 1528 197 128 163 chr9 24787961 24788005 -93074622 + MLT2B3 LTR ERVL 510 554 0 515 286 0 19 chr9 24788014 24788168 -93074459 + L1MCc LINE L1 4763 4913 -2028 502 223 50 14 chr9 24788366 24788505 -93074122 + L1MCc LINE L1 4907 5050 -1891 * 6280 177 47 9 chr9 24788502 24789748 -93072879 + L1MC3 LINE L1 6493 7785 0 186 323 32 48 chr9 24790353 24790477 -93072150 + MIR SINE MIR 47 168 -94 362 215 21 0 chr9 24790485 24790578 -93072049 + (CATATA)n Simple_repeat Simple_repeat 1 95 0 232 175 0 0 chr9 24790684 24790724 -93071903 + L3 LINE CR1 1514 1553 -24 193 154 58 58 chr9 24790693 24790745 -93071882 + L3b LINE CR1 1529 1580 -3 * 315 325 18 26 chr9 24792224 24792338 -93070289 + MIR SINE MIR 22 134 -128 435 344 93 5 chr9 24792369 24792639 -93069988 + L2 LINE L2 2720 3017 -296 418 235 31 0 chr9 24792650 24792748 -93069879 + Tigger3b DNA MER2_type 2 102 -1129 236 75 75 0 chr9 24792754 24792794 -93069833 + Tigger3b DNA MER2_type 282 324 -907 303 28 0 0 chr9 24792796 24792832 -93069795 + (TG)n Simple_repeat Simple_repeat 2 37 0 323 105 18 0 chr9 24792832 24792889 -93069738 + (TA)n Simple_repeat Simple_repeat 2 59 0 4394 110 18 20 chr9 24792893 24793601 -93069026 + Tigger3b DNA MER2_type 340 1046 -185 1118 121 0 0 chr9 24793845 24794002 -93068625 + Tigger3b DNA MER2_type 1049 1205 -26 310 336 100 0 chr9 24794313 24794423 -93068204 + L2 LINE L2 3136 3256 -16 246 370 91 0 chr9 24796228 24796393 -93066234 + MIR SINE MIR 83 262 0 24 67 0 0 chr9 24796772 24796817 -93065810 + AT_rich Low_complexity Low_complexity 1 45 0 340 346 84 11 chr9 24797242 24797421 -93065206 - Charlie8 DNA MER1_type -2152 265 74 333 0 0 0 chr9 24797423 24797460 -93065167 + (A)n Simple_repeat Simple_repeat 1 37 0 2421 90 0 0 chr9 24799304 24799605 -93063022 - AluSg SINE Alu -9 301 1 2099 116 14 0 chr9 24799615 24799909 -93062718 - AluSc SINE Alu -11 298 1 185 421 83 0 chr9 24799914 24800047 -93062580 + L2 LINE L2 3089 3232 -40 1223 253 84 45 chr9 24800223 24800686 -93061941 - LTR33 LTR ERVL -1 520 40 1683 154 58 61 chr9 24801057 24801361 -93061266 + THE1C LTR MaLR 1 305 -70 2467 79 0 0 chr9 24801361 24801666 -93060961 + AluY SINE Alu 1 305 -6 1683 154 58 61 chr9 24801666 24801737 -93060890 + THE1C LTR MaLR 305 375 0 1694 139 0 0 chr9 24802070 24802337 -93060290 + L1MA4A LINE L1 6026 6292 -11 675 266 130 5 chr9 24802556 24802763 -93059864 - MIR SINE MIR -24 238 6 26 0 0 0 chr9 24803024 24803050 -93059577 + AT_rich Low_complexity Low_complexity 1 26 0 222 223 287 0 chr9 24803118 24803212 -93059415 + L2 LINE L2 1899 2019 -1295 3082 137 101 20 chr9 24803213 24803793 -93058834 - LTR49 LTR ERV1 0 595 1 886 331 67 59 chr9 24803795 24804361 -93058266 + L2 LINE L2 2067 2627 -686 1705 176 65 9 chr9 24804361 24804684 -93057943 + MER2 DNA MER2_type 2 342 -2 886 331 67 59 chr9 24804684 24805323 -93057304 + L2 LINE L2 2627 3284 -29 202 294 51 85 chr9 24805350 24805527 -93057100 - L2 LINE L2 -46 3267 3097 362 301 35 9 chr9 24805621 24805734 -93056893 - MIR SINE MIR -130 132 17 3446 166 2 2 chr9 24807531 24808122 -93054505 + L1MB2 LINE L1 5577 6167 -4 299 219 55 14 chr9 24808302 24808375 -93054252 - MIR SINE MIR -83 179 104 180 293 0 0 chr9 24808609 24808650 -93053977 - L2 LINE L2 -11 3302 3262 403 304 37 43 chr9 24808663 24808824 -93053803 - MIR SINE MIR -91 171 12 330 306 89 27 chr9 24811766 24812172 -93050455 - MLT1L LTR MaLR -2 613 142 2470 61 0 7 chr9 24813099 24813409 -93049218 + AluY SINE Alu 1 308 -3 2197 96 7 13 chr9 24814491 24814794 -93047833 - AluSx SINE Alu -11 301 1 269 226 95 29 chr9 24815580 24815717 -93046910 + L1ME LINE L1 5322 5467 -2341 254 217 0 0 chr9 24815802 24815848 -93046779 + L1ME LINE L1 5616 5661 -460 21 71 0 0 chr9 24815881 24815923 -93046704 + AT_rich Low_complexity Low_complexity 1 42 0 1821 162 10 0 chr9 24816441 24816749 -93045878 + AluJb SINE Alu 1 311 -1 502 194 48 48 chr9 24816772 24816896 -93045731 + Tigger3(Golem) DNA MER2_type 1 124 -2905 413 248 293 0 chr9 24817744 24817877 -93044750 + MER5A DNA MER1_type 12 183 -6 398 358 59 5 chr9 24817962 24818166 -93044461 + MIR SINE MIR 21 235 -27 2399 71 7 13 chr9 24818613 24818922 -93043705 - AluY SINE Alu -3 308 2 282 319 127 30 chr9 24819200 24819366 -93043261 + MIR SINE MIR 23 204 -58 229 273 11 0 chr9 24819547 24819635 -93042992 + (TA)n Simple_repeat Simple_repeat 2 90 0 229 337 81 6 chr9 24819754 24819926 -93042701 + L2 LINE L2 2369 2553 -761 863 233 78 0 chr9 24820284 24820490 -93042137 + MER58A DNA MER1_type 3 224 0 718 94 0 0 chr9 24820519 24820640 -93041987 + AluSp/q SINE Alu 188 308 0 1153 267 99 19 chr9 24820734 24821199 -93041428 + MLT1D LTR MaLR 1 502 -3 474 179 0 0 chr9 24821631 24821726 -93040901 + GA-rich Low_complexity Low_complexity 2 96 0 2142 99 7 0 chr9 24822263 24822545 -93040082 + AluSc SINE Alu 1 284 -25 876 267 104 59 chr9 24822937 24823658 -93038969 + L2 LINE L2 2531 3296 -17 443 314 103 5 chr9 24823806 24824000 -93038627 - L2 LINE L2 0 3313 3101 641 260 115 67 chr9 24824688 24825000 -93037627 + MLT1I LTR MaLR 81 407 -2 21 36 0 0 chr9 24825293 24825321 -93037306 + AT_rich Low_complexity Low_complexity 1 28 0 219 324 0 54 chr9 24827205 24827279 -93035348 - L2 LINE L2 -66 3206 3137 2473 155 8 37 chr9 24827353 24827837 -93034790 + L1MB7 LINE L1 5709 6178 -6 189 288 0 51 chr9 24828651 24828710 -93033917 + L2 LINE L2 3201 3256 -16 644 332 59 56 chr9 24828893 24829285 -93033342 + L2 LINE L2 2878 3270 -2 1548 207 3 7 chr9 24829947 24830237 -93032390 + AluSx SINE Alu 1 289 -23 1778 174 7 3 chr9 24830246 24830550 -93032077 + AluJo SINE Alu 1 305 -7 4348 135 41 36 chr9 24830825 24832206 -93030421 + pTR5 LTR ERV1 741 2438 0 1762 181 10 0 chr9 24832335 24832639 -93029988 + AluSx SINE Alu 4 310 -2 21 0 0 0 chr9 24833104 24833125 -93029502 + AT_rich Low_complexity Low_complexity 1 21 0 196 238 109 50 chr9 24833326 24833427 -93029200 + MIR SINE MIR 38 144 -64 392 254 8 25 chr9 24833816 24833938 -93028689 - MER103 DNA DNA -21 145 26 347 323 89 32 chr9 24834297 24834542 -93028085 + L1MB7 LINE L1 3996 4226 -1920 2048 123 28 0 chr9 24834542 24834826 -93027801 - AluSg SINE Alu -18 292 1 347 323 89 32 chr9 24834826 24835912 -93026715 + L1MB7 LINE L1 4226 5403 -743 1650 170 64 19 chr9 24835955 24836314 -93026313 - THE1C LTR MaLR 0 375 1 430 318 90 26 chr9 24836596 24836983 -93025644 + HAL1 LINE L1 1371 1782 -725 39 0 0 0 chr9 24837409 24837448 -93025179 + AT_rich Low_complexity Low_complexity 1 39 0 5580 247 59 35 chr9 24837799 24837989 -93024638 + L1MEc LINE L1 789 973 -5242 2266 108 0 6 chr9 24837989 24838304 -93024323 + AluSq SINE Alu 1 313 0 5580 247 59 35 chr9 24838304 24841011 -93021616 + L1MEc LINE L1 973 3686 -2529 1396 163 42 0 chr9 24841530 24841770 -93020857 - Tigger3(Golem) DNA MER2_type 0 3035 2786 6697 238 59 46 chr9 24842353 24844709 -93017918 + L1M4b LINE L1 19 2523 -4615 270 81 0 0 chr9 24844709 24844746 -93017881 + (CA)n Simple_repeat Simple_repeat 2 38 0 6697 238 59 46 chr9 24844746 24844950 -93017677 + L1M4b LINE L1 2523 2723 -4415 399 306 24 44 chr9 24844941 24845189 -93017438 + L1MEc LINE L1 1729 1971 -4425 * 5395 148 71 45 chr9 24845397 24846542 -93016085 - Ricksha_a DNA DNA -7 1174 1 6954 228 63 20 chr9 24846559 24848486 -93014141 + L1MEc LINE L1 2221 4440 -1775 2352 73 3 16 chr9 24848486 24848799 -93013828 + AluY SINE Alu 1 309 -2 6954 228 63 20 chr9 24848799 24849267 -93013360 + L1MEc LINE L1 4440 4886 -1329 3160 192 62 7 chr9 24849272 24849950 -93012677 + L1MB7 LINE L1 5470 6184 0 533 231 176 33 chr9 24853074 24853256 -93009371 - MIR SINE MIR -1 261 54 925 270 68 4 chr9 24853795 24854032 -93008595 + MIR SINE MIR 1 252 -10 182 88 0 29 chr9 24854039 24854073 -93008554 + (CAT)n Simple_repeat Simple_repeat 2 34 0 242 332 25 55 chr9 24854200 24854399 -93008228 + L2 LINE L2 2545 2737 -577 225 274 0 32 chr9 24854633 24854695 -93007932 - MIR SINE MIR -62 146 87 351 264 132 40 chr9 24854816 24854990 -93007637 - MIR SINE MIR 0 262 73 519 17 0 0 chr9 24855771 24855826 -93006801 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 519 17 0 0 chr9 24855826 24855886 -93006741 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 376 346 30 0 chr9 24856960 24857093 -93005534 - L2 LINE L2 -3 3269 3133 1851 79 4 20 chr9 24857286 24857539 -93005088 - AluSp SINE Alu 0 313 65 1504 230 55 93 chr9 24857931 24858173 -93004454 - MLT1E2 LTR MaLR -1 625 375 2556 51 0 13 chr9 24858173 24858488 -93004139 + AluY SINE Alu 1 311 0 1504 230 55 93 chr9 24858488 24858858 -93003769 - MLT1E2 LTR MaLR -251 375 59 278 299 62 7 chr9 24859019 24859163 -93003464 - L1ME4a LINE L1 -14 6107 5956 236 254 127 35 chr9 24859260 24859433 -93003194 - L1ME4a LINE L1 -306 5815 5627 973 270 96 12 chr9 24859653 24859997 -93002630 + MLT1I LTR MaLR 1 373 -36 1904 214 46 32 chr9 24860500 24860996 -93001631 - MLT1D LTR MaLR -2 503 1 371 263 114 18 chr9 24862248 24862362 -93000265 + MLT1I LTR MaLR 285 409 0 29 28 0 0 chr9 24862539 24862575 -93000052 + AT_rich Low_complexity Low_complexity 1 36 0 1483 153 12 117 chr9 24863216 24863550 -92999077 - AluJb SINE Alu -1 301 3 219 304 0 8 chr9 24863671 24863743 -92998884 + GA-rich Low_complexity Low_complexity 3 124 0 21 36 0 0 chr9 24864226 24864254 -92998373 + AT_rich Low_complexity Low_complexity 1 28 0 245 271 112 28 chr9 24864774 24864940 -92997687 + MIR SINE MIR 44 219 -43 462 223 214 0 chr9 24865262 24865374 -92997253 - MER5A DNA MER1_type 0 189 54 426 316 169 32 chr9 24866612 24866960 -92995667 - L2 LINE L2 -47 3266 2871 21 71 0 0 chr9 24867188 24867230 -92995397 + AT_rich Low_complexity Low_complexity 1 42 0 1975 117 70 9 chr9 24867253 24867595 -92995032 - L1PA13 LINE L1 -7 6156 5794 22 56 0 0 chr9 24868372 24868408 -92994219 + AT_rich Low_complexity Low_complexity 1 36 0 360 238 66 41 chr9 24869246 24869368 -92993259 - L2 LINE L2 -2 3311 3187 2054 100 0 10 chr9 24869369 24869705 -92992922 + AluSg SINE Alu 5 310 0 828 307 114 35 chr9 24869750 24870327 -92992300 - L2 LINE L2 -1 3312 2690 299 339 73 0 chr9 24870851 24870975 -92991652 + L2 LINE L2 3165 3297 -16 267 31 0 0 chr9 24872336 24872368 -92990259 + (CA)n Simple_repeat Simple_repeat 2 33 0 244 313 134 8 chr9 24872572 24872706 -92989921 - MIR SINE MIR -71 191 41 362 286 139 58 chr9 24872859 24873219 -92989408 + MLT1J LTR MaLR 99 487 -24 23 54 0 0 chr9 24873284 24873321 -92989306 + AT_rich Low_complexity Low_complexity 1 37 0 504 299 85 19 chr9 24874890 24875101 -92987526 + MIR SINE MIR 28 252 -10 186 217 43 0 chr9 24876934 24876980 -92985647 + L2 LINE L2 3266 3313 0 2065 187 98 0 chr9 24877006 24877412 -92985215 - MER74C LTR ERVL -2 458 13 2409 68 0 3 chr9 24877412 24877708 -92984919 - AluY SINE Alu -16 295 1 1966 157 50 66 chr9 24877858 24878297 -92984330 + MSTB1 LTR MaLR 1 432 0 22 0 0 0 chr9 24878325 24878347 -92984280 + AT_rich Low_complexity Low_complexity 1 22 0 990 250 71 60 chr9 24878602 24878966 -92983661 + MLT1D LTR MaLR 1 368 -137 259 330 45 18 chr9 24878988 24879100 -92983527 - MIR SINE MIR -113 149 35 631 183 102 7 chr9 24879286 24879423 -92983204 + MLT1D LTR MaLR 354 503 -2 27 49 0 0 chr9 24880721 24880762 -92981865 + AT_rich Low_complexity Low_complexity 1 41 0 3016 244 115 16 chr9 24881097 24881872 -92980755 - L1ME LINE L1 -395 5838 5141 210 37 0 0 chr9 24881872 24881899 -92980728 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3016 244 115 16 chr9 24881899 24882000 -92980627 - L1ME LINE L1 -1092 5141 5051 2089 122 138 5 chr9 24882000 24882378 -92980249 - MSTA LTR MaLR 0 428 1 3016 244 115 16 chr9 24882378 24883380 -92979247 - L1ME LINE L1 -1182 5051 3772 713 110 45 0 chr9 24883529 24883683 -92978944 + (TA)n Simple_repeat Simple_repeat 2 162 0 318 202 11 64 chr9 24883683 24883777 -92978850 - L1MC4 LINE L1 -1338 6704 6616 478 157 41 0 chr9 24883777 24883898 -92978729 + (TA)n Simple_repeat Simple_repeat 1 126 0 393 75 0 0 chr9 24883935 24883988 -92978639 + (TA)n Simple_repeat Simple_repeat 1 53 0 2074 104 16 50 chr9 24883988 24884305 -92978322 - AluSc SINE Alu -3 306 1 232 240 73 60 chr9 24884357 24884507 -92978120 - L1ME LINE L1 -2759 3456 3305 434 261 13 25 chr9 24884507 24884664 -92977963 + MER105 DNA DNA 1 155 -49 649 246 17 90 chr9 24884713 24884877 -92977750 - L1ME LINE L1 -2913 3302 3128 490 230 88 18 chr9 24884877 24884990 -92977637 - FLAM_A SINE Alu -11 122 2 649 246 17 90 chr9 24884990 24885227 -92977400 - L1ME LINE L1 -3087 3128 2930 533 178 0 10 chr9 24885228 24885329 -92977298 + AluJo SINE Alu 119 218 -94 5099 163 36 29 chr9 24885458 24886377 -92976250 - L1MA9 LINE L1 0 6312 5401 2388 68 102 0 chr9 24886377 24886699 -92975928 + THE1A LTR MaLR 1 355 0 10979 100 19 3 chr9 24886699 24888253 -92974374 + THE1A-int LTR MaLR 1 1580 0 2704 85 3 0 chr9 24888253 24888607 -92974020 + THE1A LTR MaLR 1 355 0 5099 163 36 29 chr9 24888607 24889008 -92973619 - L1MA9 LINE L1 -910 5402 4973 266 282 13 0 chr9 24889049 24889127 -92973500 - L1ME LINE L1 -6211 185 107 188 306 10 15 chr9 24889341 24889408 -92973219 + L2 LINE L2 3188 3295 -18 366 339 54 63 chr9 24889502 24889523 -92973104 - MIR SINE MIR -6 256 236 620 250 111 43 chr9 24889523 24889564 -92973063 + MER58A DNA MER1_type 3 40 -2380 2249 70 0 23 chr9 24889564 24889897 -92972730 - AluY SINE Alu 0 311 1 620 250 111 43 chr9 24889897 24890063 -92972564 + MER58A DNA MER1_type 40 224 0 366 339 54 63 chr9 24890063 24890280 -92972347 - MIR SINE MIR -26 236 20 225 171 29 14 chr9 24890522 24890592 -92972035 + (TA)n Simple_repeat Simple_repeat 1 71 0 223 299 69 23 chr9 24892838 24892925 -92969702 + MIR SINE MIR 55 145 -63 201 313 0 0 chr9 24892982 24893030 -92969597 + L2 LINE L2 3251 3298 -15 223 356 144 28 chr9 24893146 24893326 -92969301 + L3 LINE CR1 1244 1444 -133 457 263 46 20 chr9 24893375 24893527 -92969100 + MIR SINE MIR 31 186 -76 201 221 265 0 chr9 24894197 24894265 -92968362 - L2 LINE L2 -1 3271 3186 689 281 16 103 chr9 24894288 24894676 -92967951 - L2 LINE L2 -68 3245 2892 241 292 37 35 chr9 24895288 24895434 -92967193 + MIR SINE MIR 32 174 -66 238 254 34 17 chr9 24897023 24897082 -92965545 - L2 LINE L2 -12 3260 3201 2405 119 5 22 chr9 24897454 24897823 -92964804 + THE1B LTR MaLR 1 363 -1 7493 68 3 8 chr9 24898225 24899999 -92962628 + L1PA6 LINE L1 4390 6154 0 770 247 111 14 chr9 24900155 24900533 -92962094 + L1ME3 LINE L1 5739 6160 -2 364 277 35 64 chr9 24901103 24901244 -92961383 + MIR SINE MIR 13 149 -113 789 216 25 0 chr9 24901345 24901507 -92961120 - MER97c DNA MER1_type? -911 179 14 2073 162 12 3 chr9 24902236 24902570 -92960057 + MER1B DNA MER1_type 1 337 0 222 37 0 0 chr9 24902710 24902737 -92959890 + (CAAAA)n Simple_repeat Simple_repeat 5 31 0 24 0 0 0 chr9 24903007 24903031 -92959596 + AT_rich Low_complexity Low_complexity 1 24 0 814 304 16 4 chr9 24903099 24903346 -92959281 + MIR SINE MIR 8 257 -5 379 353 53 35 chr9 24903647 24904024 -92958603 + L2 LINE L2 2360 2743 -571 270 287 0 43 chr9 24904404 24904498 -92958129 + L2 LINE L2 2994 3083 -189 502 301 38 16 chr9 24904818 24905001 -92957626 - MIR SINE MIR -74 188 2 424 305 85 37 chr9 24905166 24905330 -92957297 + L3b LINE CR1 1388 1559 -24 417 294 64 46 chr9 24906039 24906245 -92956382 - MIR SINE MIR -55 207 2 660 267 71 29 chr9 24906395 24906635 -92955992 - MIR SINE MIR -5 257 8 866 221 33 6 chr9 24906650 24906831 -92955796 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr9 24907860 24907882 -92954745 + AT_rich Low_complexity Low_complexity 1 22 0 341 262 30 83 chr9 24908047 24908215 -92954412 - MIR SINE MIR -5 257 99 1238 266 190 26 chr9 24908225 24908725 -92953902 + MLT1G1 LTR MaLR 13 594 -1 231 269 87 39 chr9 24908879 24908983 -92953644 - L2 LINE L2 -5 3267 3159 211 225 0 0 chr9 24909234 24909274 -92953353 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 459 0 0 0 chr9 24909355 24909406 -92953221 + (CA)n Simple_repeat Simple_repeat 1 51 0 1460 197 25 11 chr9 24909484 24909601 -92953026 + AluJo SINE Alu 1 115 -190 234 0 0 0 chr9 24909601 24909627 -92953000 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1460 197 25 11 chr9 24909627 24909810 -92952817 + AluJo SINE Alu 115 305 0 699 234 90 129 chr9 24909899 24910489 -92952138 + L1MDa LINE L1 75 641 -5899 2590 57 0 13 chr9 24910533 24910847 -92951780 - AluY SINE Alu -1 310 1 482 201 195 17 chr9 24911235 24911409 -92951218 + L1MDa LINE L1 1021 1225 -5318 2312 100 0 3 chr9 24911736 24912046 -92950581 - AluSg SINE Alu 0 310 2 1365 167 41 56 chr9 24912327 24912596 -92950031 + AluJb SINE Alu 1 265 -47 394 286 83 83 chr9 24913023 24913263 -92949364 - L2 LINE L2 -1 3271 3032 1013 191 11 21 chr9 24913263 24913452 -92949175 - MER5A DNA MER1_type -2 187 1 424 200 17 113 chr9 24913484 24913599 -92949028 + MER5A DNA MER1_type 9 112 -77 682 226 126 6 chr9 24913636 24913795 -92948832 - MER5B DNA MER1_type 0 178 1 450 261 82 23 chr9 24914930 24915082 -92947545 - MIR SINE MIR -65 143 7 1766 102 19 8 chr9 24915457 24915721 -92946906 + MER39 LTR ERV1 441 707 0 1482 104 59 0 chr9 24915770 24915972 -92946655 - AluSc SINE Alu -11 298 85 521 326 69 60 chr9 24916114 24916547 -92946080 + L2 LINE L2 2836 3272 0 966 245 102 3 chr9 24917012 24917326 -92945301 + L1MC4 LINE L1 7107 7451 -591 1659 214 123 12 chr9 24917326 24917747 -92944880 - MLT1F LTR MaLR 0 542 75 2360 175 8 56 chr9 24917750 24918230 -92944397 - LTR9 LTR ERV1 0 612 156 5412 194 56 31 chr9 24919949 24921220 -92941407 - L1 LINE L1 -1993 4153 2852 1442 182 30 61 chr9 24922128 24922425 -92940202 - AluJo SINE Alu -24 288 1 1042 287 42 12 chr9 24922779 24923183 -92939444 + L1MC1 LINE L1 5401 5816 -1992 556 263 6 29 chr9 24923869 24924044 -92938583 - MER5B DNA MER1_type -4 174 4 2516 160 18 61 chr9 24924356 24924801 -92937826 + MSTB LTR MaLR 1 426 0 379 150 150 18 chr9 24925408 24925521 -92937106 + Charlie4 DNA MER1_type 1740 1867 -94 1223 145 0 0 chr9 24925621 24925799 -92936828 + AluSg/x SINE Alu 120 300 -10 2102 150 9 0 chr9 24925799 24926125 -92936502 + L1MC1 LINE L1 6005 6333 0 28 48 0 0 chr9 24926340 24926382 -92936245 + AT_rich Low_complexity Low_complexity 1 42 0 213 298 137 16 chr9 24926419 24926543 -92936084 - L2 LINE L2 -225 3047 2909 1728 162 16 13 chr9 24927187 24927501 -92935126 - L1MA4 LINE L1 -7 6293 5979 889 183 140 0 chr9 24928106 24928335 -92934292 + L1MDb LINE L1 887 1147 -5262 268 351 45 9 chr9 24929015 24929126 -92933501 + MIR SINE MIR 35 149 -113 597 41 0 0 chr9 24930128 24930201 -92932426 + L1PA8 LINE L1 6095 6167 -5 218 323 40 50 chr9 24930370 24930469 -92932158 + MIR SINE MIR 20 117 -91 233 211 18 35 chr9 24930872 24930929 -92931698 + MIR SINE MIR 37 92 -170 472 244 43 37 chr9 24931378 24931542 -92931085 - MIR SINE MIR 0 262 98 1641 118 20 0 chr9 24931886 24932140 -92930487 - L1MA5 LINE L1 -4 6296 6038 472 230 43 50 chr9 24932162 24932301 -92930326 - MIR SINE MIR -27 235 98 292 310 0 0 chr9 24933127 24933198 -92929429 - L2 LINE L2 -22 3250 3180 257 339 98 11 chr9 24936190 24936364 -92926263 - MER117 DNA MER1_type -4 193 5 267 260 96 123 chr9 24936989 24937078 -92925549 - MIR SINE MIR -45 217 127 2210 92 0 0 chr9 24937078 24937387 -92925240 + AluY SINE Alu 1 309 0 267 260 96 123 chr9 24937387 24937514 -92925113 - MIR SINE MIR -135 127 5 22 0 0 0 chr9 24938488 24938510 -92924117 + AT_rich Low_complexity Low_complexity 1 22 0 334 323 16 16 chr9 24939446 24939570 -92923057 - MLT2E LTR ERVL -473 155 32 2271 108 7 0 chr9 24940316 24940623 -92922004 + AluSc SINE Alu 1 309 0 2543 74 0 0 chr9 24940682 24940991 -92921636 + AluY SINE Alu 1 309 -2 1659 129 80 4 chr9 24941260 24941524 -92921103 + AluSx SINE Alu 1 284 -28 555 304 151 31 chr9 24941977 24942404 -92920223 + L2 LINE L2 2743 3238 -75 1576 256 67 20 chr9 24942490 24942939 -92919688 - L2 LINE L2 -6 3307 2838 1361 179 4 73 chr9 24942950 24943223 -92919404 + AluJo SINE Alu 7 260 -52 697 111 0 63 chr9 24943255 24943445 -92919182 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 4773 40 0 0 chr9 24943461 24944039 -92918588 - L1PA4 LINE L1 -795 5351 4774 7116 34 5 0 chr9 24944039 24944837 -92917790 + L1PA4 LINE L1 5353 6155 0 368 306 50 54 chr9 24944877 24945099 -92917528 - L2 LINE L2 -368 2946 2726 291 290 56 9 chr9 24945473 24945580 -92917047 - MIR3 SINE MIR -2 206 95 313 283 69 56 chr9 24946719 24946952 -92915675 + MARNA DNA Mariner 334 569 -17 270 373 63 0 chr9 24947010 24947168 -92915459 + MIR SINE MIR 72 239 -23 251 357 0 19 chr9 24947975 24948099 -92914528 - MIR SINE MIR -67 141 21 540 291 114 17 chr9 24948503 24948740 -92913887 - MIR SINE MIR 0 262 3 224 252 134 39 chr9 24949881 24950008 -92912619 + MER5A DNA MER1_type 21 159 -30 557 252 22 0 chr9 24950160 24950295 -92912332 + MIR SINE MIR 69 206 -56 829 218 42 26 chr9 24950302 24950495 -92912132 + MER20 DNA MER1_type 1 196 -23 543 297 42 6 chr9 24950541 24950706 -92911921 + MIR SINE MIR 48 218 -44 188 227 67 40 chr9 24952370 24952445 -92910182 - MIR SINE MIR -76 186 110 256 191 0 0 chr9 24952530 24952577 -92910050 + L2 LINE L2 2710 2756 -558 884 192 6 34 chr9 24952594 24952771 -92909856 + MER5B DNA MER1_type 7 178 0 347 314 101 60 chr9 24952829 24953240 -92909387 + L2 LINE L2 2818 3249 -23 3223 126 20 39 chr9 24953240 24953782 -92908845 + L1MB4 LINE L1 5648 6179 -1 347 314 101 60 chr9 24953782 24953807 -92908820 + L2 LINE L2 3249 3272 0 * 494 321 77 18 chr9 24953806 24954120 -92908507 + L2 LINE L2 2753 3092 -221 299 235 0 15 chr9 24954133 24954201 -92908426 - MLT1J2 LTR MaLR 0 450 384 615 231 39 0 chr9 24954201 24954331 -92908296 - MER5A DNA MER1_type -8 181 47 1526 174 40 82 chr9 24954331 24954390 -92908237 + MLT1A1 LTR MaLR 1 61 -304 2490 137 28 14 chr9 24954390 24954749 -92907878 - THE1B LTR MaLR 0 364 1 1526 174 40 82 chr9 24954749 24955069 -92907558 + MLT1A1 LTR MaLR 61 364 -1 332 128 0 0 chr9 24955069 24955116 -92907511 - MER5A DNA MER1_type -137 52 6 990 269 97 38 chr9 24955116 24955488 -92907139 - MLT1J2 LTR MaLR -50 400 7 599 232 39 77 chr9 24955498 24955705 -92906922 + L2 LINE L2 3115 3313 0 475 376 41 5 chr9 24956670 24956888 -92905739 - MIR SINE MIR -6 256 31 287 333 44 0 chr9 24956918 24957008 -92905619 - L2 LINE L2 -1 3271 3178 231 274 48 0 chr9 24957084 24957146 -92905481 - L2 LINE L2 -219 3053 2989 417 229 16 16 chr9 24958140 24958262 -92904365 + MLT1J2 LTR MaLR 20 141 -309 212 371 100 10 chr9 24958788 24958859 -92903768 + L2 LINE L2 2767 2830 -442 878 53 76 30 chr9 24958859 24958990 -92903637 + MER85 DNA T2_type 1 137 -2 212 371 100 10 chr9 24958990 24959172 -92903455 + L2 LINE L2 2830 3035 -237 2243 112 7 0 chr9 24959223 24959526 -92903101 - AluSq SINE Alu -8 305 1 22 36 0 55 chr9 24960290 24960324 -92902303 + AT_rich Low_complexity Low_complexity 1 32 -20 2249 99 0 0 chr9 24960324 24960608 -92902019 - AluSg SINE Alu -26 284 1 22 36 0 55 chr9 24960608 24960628 -92901999 + AT_rich Low_complexity Low_complexity 32 52 0 575 263 74 21 chr9 24960781 24960971 -92901656 + MIR SINE MIR 53 252 -10 347 223 32 21 chr9 24962691 24962785 -92899842 - MIR SINE MIR -105 157 63 377 336 146 0 chr9 24963178 24963404 -92899223 + MIR SINE MIR 4 262 0 510 283 7 21 chr9 24964125 24964270 -92898357 + MIR SINE MIR 49 191 -71 21 0 0 0 chr9 24964334 24964355 -92898272 + AT_rich Low_complexity Low_complexity 1 21 0 685 291 37 8 chr9 24965354 24965595 -92897032 + MIR SINE MIR 4 251 -11 213 256 135 60 chr9 24966975 24967108 -92895519 + L2 LINE L2 2937 3079 -193 244 217 65 33 chr9 24967244 24967693 -92894934 + MER88 LTR ERVL 79 173 -291 1238 252 78 38 chr9 24967256 24967304 -92895323 - MER74B LTR ERVL -74 548 503 2130 123 42 25 chr9 24967304 24967662 -92894965 + THE1B LTR MaLR 1 364 0 1238 252 78 38 chr9 24967662 24968090 -92894537 - MER74B LTR ERVL -119 503 53 374 259 48 95 chr9 24968288 24968477 -92894150 - MIR SINE MIR -75 187 8 257 295 0 0 chr9 24968512 24968573 -92894054 + L2 LINE L2 3211 3271 -1 1698 164 0 0 chr9 24968710 24968972 -92893655 + AluJo SINE Alu 18 279 -33 1909 139 128 8 chr9 24968974 24969342 -92893285 - MSTA LTR MaLR -16 412 1 565 293 27 59 chr9 24969403 24969514 -92893113 - MIR SINE MIR -3 259 146 459 0 0 0 chr9 24969514 24969565 -92893062 + (TA)n Simple_repeat Simple_repeat 1 51 0 565 293 27 59 chr9 24969565 24969709 -92892918 - MIR SINE MIR -116 146 12 274 244 47 23 chr9 24971658 24971744 -92890883 + MIR3 SINE MIR 110 197 -11 23 0 0 0 chr9 24972317 24972340 -92890287 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 24973007 24973032 -92889595 + AT_rich Low_complexity Low_complexity 1 25 0 2031 99 0 41 chr9 24973097 24973391 -92889236 + AluSc SINE Alu 1 282 -27 200 161 0 0 chr9 24974020 24974051 -92888576 + MIR SINE MIR 33 63 -145 316 242 112 56 chr9 24974967 24975182 -92887445 - L1ME4a LINE L1 -1 6120 5894 267 275 18 28 chr9 24975797 24975906 -92886721 - MLT1J LTR MaLR -4 507 400 361 244 39 38 chr9 24976056 24976234 -92886393 - MLT1L LTR MaLR -331 180 1 22 0 0 0 chr9 24976589 24976611 -92886016 + AT_rich Low_complexity Low_complexity 1 22 0 655 316 43 64 chr9 24976668 24977013 -92885614 - L3 LINE CR1 -103 1474 1137 358 323 165 28 chr9 24977129 24977414 -92885213 - L3 LINE CR1 -776 801 478 191 341 47 0 chr9 24977580 24977665 -92884962 - MIR SINE MIR -13 249 161 2042 229 142 34 chr9 24977799 24977845 -92884782 - MER21B LTR ERV1 -124 739 699 2520 193 80 62 chr9 24977845 24978554 -92884073 + MER72 LTR ERV1 1 722 0 2042 229 142 34 chr9 24978554 24979163 -92883464 - MER21B LTR ERV1 -164 699 13 182 313 21 0 chr9 24979175 24979223 -92883404 - MIR SINE MIR -114 94 46 2317 98 0 31 chr9 24979921 24980239 -92882388 + AluSq SINE Alu 1 308 -5 251 263 109 29 chr9 24980276 24980413 -92882214 - MIR SINE MIR -12 250 103 252 247 12 49 chr9 24980532 24980613 -92882014 + GA-rich Low_complexity Low_complexity 5 82 0 219 261 61 61 chr9 24980759 24980874 -92881753 - L2 LINE L2 -2 3311 3197 268 331 93 26 chr9 24982051 24982202 -92880425 - L2 LINE L2 -5 3267 3107 737 247 35 11 chr9 24982492 24982666 -92879961 + MIR SINE MIR 72 249 -13 269 250 46 56 chr9 24983895 24984003 -92878624 - MIR SINE MIR -34 228 122 226 348 152 5 chr9 24984520 24984704 -92877923 - MIR SINE MIR -40 222 12 1374 156 43 112 chr9 24984796 24985188 -92877439 + MLT1A1 LTR MaLR 1 365 0 360 0 0 0 chr9 24985225 24985265 -92877362 + (TA)n Simple_repeat Simple_repeat 1 40 0 200 361 175 40 chr9 24985538 24986393 -92876234 - L2 LINE L2 -516 2798 1814 180 0 0 0 chr9 24986393 24986413 -92876214 + (GA)n Simple_repeat Simple_repeat 2 21 0 200 361 175 40 chr9 24986413 24986458 -92876169 - L2 LINE L2 -1500 1814 1776 310 264 92 60 chr9 24987103 24987353 -92875274 + HAL1 LINE L1 2245 2502 -5 855 185 62 120 chr9 24988952 24989320 -92873307 + MLT1A1 LTR MaLR 19 365 0 192 303 204 0 chr9 24989436 24989568 -92873059 - MIR SINE MIR -4 258 100 483 279 71 49 chr9 24989656 24989882 -92872745 + MIR SINE MIR 18 248 -14 21 0 0 0 chr9 24990243 24990264 -92872363 + AT_rich Low_complexity Low_complexity 1 21 0 2088 164 71 23 chr9 24990862 24991338 -92871289 - L1MC2 LINE L1 -9 6335 5837 266 223 36 161 chr9 24991608 24991720 -92870907 - L2 LINE L2 -6 3266 3169 237 65 0 0 chr9 24992902 24992933 -92869694 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 211 0 0 chr9 24993664 24993721 -92868906 + (TAG)n Simple_repeat Simple_repeat 3 59 0 240 346 29 19 chr9 24993815 24993919 -92868708 - MIR SINE MIR -67 141 37 259 293 71 29 chr9 24994182 24994322 -92868305 - MIR SINE MIR -5 257 112 780 266 155 13 chr9 24994346 24994662 -92867965 - L2 LINE L2 0 3313 2953 264 398 49 0 chr9 24994664 24994787 -92867840 - L2 LINE L2 -17 3255 3127 344 205 0 13 chr9 24994864 24994942 -92867685 + MER96B DNA MER1_type? 159 235 -182 230 221 26 26 chr9 24995229 24995306 -92867321 + MER103 DNA DNA 8 84 -82 255 244 0 0 chr9 24995490 24995568 -92867059 - L1MC4 LINE L1 -1340 6702 6625 479 271 106 35 chr9 24995574 24995744 -92866883 - MIR SINE MIR -73 189 8 446 289 176 5 chr9 24997187 24997374 -92865253 + MIR SINE MIR 44 262 0 690 286 75 0 chr9 24998676 24998889 -92863738 + MIR SINE MIR 31 259 -3 667 241 18 6 chr9 24999141 24999307 -92863320 - MLT1D LTR MaLR 0 505 338 678 251 67 0 chr9 24999316 24999511 -92863116 - MER3 DNA MER1_type -1 208 1 2336 118 0 3 chr9 24999953 25000266 -92862361 - AluSx SINE Alu 0 312 1 2214 149 0 3 chr9 25000652 25001001 -92861626 + MER7A DNA MER2_type 1 346 0 551 193 226 6 chr9 25001211 25001392 -92861235 - MIR SINE MIR 0 262 42 323 301 11 0 chr9 25001633 25001726 -92860901 + MIR SINE MIR 67 160 -102 1965 175 131 0 chr9 25001751 25002164 -92860463 + MLT2B2 LTR ERVL 1 357 -40 203 161 0 0 chr9 25002164 25002195 -92860432 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 318 266 83 28 chr9 25002825 25002934 -92859693 - MLT1A1 LTR MaLR -72 302 188 309 68 0 0 chr9 25002947 25002991 -92859636 + (CA)n Simple_repeat Simple_repeat 2 45 0 354 61 0 0 chr9 25002992 25003041 -92859586 + (GA)n Simple_repeat Simple_repeat 1 49 0 705 170 50 7 chr9 25003066 25003207 -92859420 - MLT1A1 LTR MaLR -218 147 1 220 309 59 52 chr9 25003443 25003579 -92859048 + L2 LINE L2 2849 2985 -328 349 130 0 0 chr9 25003707 25003761 -92858866 - L2 LINE L2 -35 3278 3225 404 269 94 25 chr9 25004861 25005021 -92857606 - MLT1J2 LTR MaLR 0 450 280 486 321 61 6 chr9 25005407 25005572 -92857055 + MIR SINE MIR 18 191 -71 1443 211 44 6 chr9 25005583 25005943 -92856684 - MER89 LTR ERV1 -10 549 176 207 0 0 0 chr9 25006748 25006771 -92855856 + (TG)n Simple_repeat Simple_repeat 2 24 0 191 249 118 124 chr9 25006852 25007021 -92855606 + L3 LINE CR1 1052 1219 -358 1948 198 56 90 chr9 25007898 25007940 -92854687 - MLT2B1 LTR ERVL 0 520 478 309 26 0 0 chr9 25007940 25007978 -92854649 + (TG)n Simple_repeat Simple_repeat 2 39 0 1948 198 56 90 chr9 25007978 25008471 -92854156 - MLT2B1 LTR ERVL -42 478 3 450 281 54 60 chr9 25008844 25009011 -92853616 + MIR SINE MIR 2 167 -95 2204 253 21 32 chr9 25010119 25010192 -92852435 + L1ME1 LINE L1 5398 5470 -696 252 0 0 0 chr9 25010192 25010220 -92852407 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2204 253 21 32 chr9 25010220 25010325 -92852302 + L1ME1 LINE L1 5470 5575 -591 1936 142 0 28 chr9 25010325 25010638 -92851989 + AluSx SINE Alu 2 306 0 2204 253 21 32 chr9 25010638 25011117 -92851510 + L1ME1 LINE L1 5575 6050 -116 493 135 34 11 chr9 25011111 25011200 -92851427 + L1ME LINE L1 5695 5785 -377 * 303 281 44 0 chr9 25011208 25011322 -92851305 + L1MA10 LINE L1 6190 6308 -26 246 192 0 0 chr9 25011389 25011441 -92851186 + (TA)n Simple_repeat Simple_repeat 2 53 0 785 263 153 46 chr9 25011534 25011907 -92850720 + MLT1K LTR MaLR 151 563 -25 531 250 107 0 chr9 25012172 25012340 -92850287 + MIR SINE MIR 73 258 -4 1469 210 45 79 chr9 25012583 25012970 -92849657 - MER63B DNA MER1_type -635 427 55 1885 145 7 3 chr9 25012970 25013259 -92849368 - AluSx SINE Alu -22 290 1 1469 210 45 79 chr9 25013259 25013313 -92849314 - MER63B DNA MER1_type -1007 55 1 552 310 42 64 chr9 25013694 25014007 -92848620 + L3 LINE CR1 1164 1469 -108 297 326 69 87 chr9 25014276 25014665 -92847962 - L2 LINE L2 0 3272 2891 584 250 132 45 chr9 25014912 25015132 -92847495 + L2 LINE L2 2836 3074 -239 520 335 59 28 chr9 25015405 25015727 -92846900 + L3 LINE CR1 1146 1477 -100 632 275 42 10 chr9 25015774 25015967 -92846660 - MIR SINE MIR -3 259 61 236 275 22 22 chr9 25016217 25016308 -92846319 + L2 LINE L2 3161 3251 -62 896 280 67 84 chr9 25017949 25018413 -92844214 - LTR16C LTR ERVL 0 491 36 346 248 50 35 chr9 25019354 25019495 -92843132 + Charlie8 DNA MER1_type 369 511 -1906 24 91 0 0 chr9 25019556 25019622 -92843005 + AT_rich Low_complexity Low_complexity 1 66 0 26 30 0 0 chr9 25019751 25019784 -92842843 + AT_rich Low_complexity Low_complexity 1 33 0 209 56 0 83 chr9 25020970 25021006 -92841621 + L3 LINE CR1 1523 1555 -22 288 331 36 36 chr9 25021221 25021387 -92841240 + L3b LINE CR1 1157 1322 -261 7347 63 7 0 chr9 25022329 25023443 -92839184 + L1PA7 LINE L1 5016 6136 -18 450 0 0 0 chr9 25023444 25023494 -92839133 + (TA)n Simple_repeat Simple_repeat 1 50 0 249 233 139 58 chr9 25024122 25024208 -92838419 - L2 LINE L2 0 3272 3180 348 24 0 0 chr9 25024695 25024736 -92837891 + (CA)n Simple_repeat Simple_repeat 1 41 0 270 0 0 0 chr9 25024768 25024798 -92837829 + (CA)n Simple_repeat Simple_repeat 2 31 0 612 256 103 10 chr9 25025692 25025895 -92836732 - Charlie8 DNA MER1_type -2153 264 43 365 232 0 0 chr9 25026684 25026753 -92835874 - L2 LINE L2 0 3313 3245 310 244 16 94 chr9 25027060 25027187 -92835440 + MIR SINE MIR 103 219 -43 726 184 24 8 chr9 25027447 25027572 -92835055 - FLAM_A SINE Alu -6 127 1 22 0 0 0 chr9 25028941 25028963 -92833664 + AT_rich Low_complexity Low_complexity 1 22 0 498 263 40 73 chr9 25029515 25029789 -92832838 + L2 LINE L2 3048 3312 -1 225 0 0 0 chr9 25029957 25029982 -92832645 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 458 292 107 6 chr9 25032028 25032206 -92830421 - MIR SINE MIR -31 231 36 754 234 152 32 chr9 25032394 25032897 -92829730 - LTR50 LTR ERVL -19 776 1 288 211 40 26 chr9 25033421 25033478 -92829149 + AluJ/FRAM SINE Alu 224 284 -18 288 0 0 0 chr9 25033478 25033510 -92829117 + (CCAA)n Simple_repeat Simple_repeat 1 32 0 288 211 40 26 chr9 25033510 25033528 -92829099 + AluJ/FRAM SINE Alu 284 300 -2 331 345 63 5 chr9 25033911 25034117 -92828510 + L2 LINE L2 2685 2902 -412 213 254 48 0 chr9 25034444 25034507 -92828120 + L2 LINE L2 3202 3267 -5 1725 159 0 41 chr9 25034982 25035320 -92827307 + AluSx SINE Alu 1 326 0 725 258 123 19 chr9 25036195 25036505 -92826122 + MLT1J2 LTR MaLR 85 426 -24 180 0 0 0 chr9 25036744 25036764 -92825863 + (TA)n Simple_repeat Simple_repeat 2 21 0 307 333 90 19 chr9 25036831 25036987 -92825640 - MIR SINE MIR -94 168 2 1203 195 45 7 chr9 25038553 25038840 -92823787 - MER33 DNA MER1_type 0 324 27 364 123 35 0 chr9 25039691 25039748 -92822879 + MER41D LTR ERV1 499 557 0 2363 150 60 29 chr9 25039748 25040078 -92822549 - L1MA9 LINE L1 -164 6148 5830 351 0 0 0 chr9 25040078 25040117 -92822510 + (TG)n Simple_repeat Simple_repeat 2 40 0 290 96 0 19 chr9 25040118 25040170 -92822457 + (TA)n Simple_repeat Simple_repeat 1 51 0 2363 150 60 29 chr9 25040170 25040289 -92822338 - L1MA9 LINE L1 -481 5831 5683 690 259 48 41 chr9 25042377 25042647 -92819980 + L1ME3A LINE L1 5842 6113 -57 355 293 101 25 chr9 25043214 25043412 -92819215 + MIR SINE MIR 36 248 -14 1189 137 71 0 chr9 25043434 25043554 -92819073 + AluJo SINE Alu 1 140 -172 195 42 0 0 chr9 25043554 25043578 -92819049 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1189 137 71 0 chr9 25043578 25043640 -92818987 + AluJo SINE Alu 140 196 -116 773 181 201 44 chr9 25044633 25044692 -92817935 - L1MC4a LINE L1 -1849 5959 5911 1857 164 3 28 chr9 25044692 25045010 -92817617 - AluSx SINE Alu -2 310 1 773 181 201 44 chr9 25045010 25045199 -92817428 - L1MC4a LINE L1 -1897 5911 5672 2523 80 0 0 chr9 25045213 25045515 -92817112 - AluY SINE Alu -8 303 2 1198 230 72 43 chr9 25045667 25045812 -92816815 - LTR2 LTR ERV1 -84 365 226 186 43 0 0 chr9 25045812 25045835 -92816792 + (CAGAA)n Simple_repeat Simple_repeat 1 23 0 1198 230 72 43 chr9 25045835 25046037 -92816590 - LTR2 LTR ERV1 -223 226 8 1091 156 0 0 chr9 25046037 25046197 -92816430 - AluSx SINE Alu -118 194 35 481 271 251 53 chr9 25046197 25046496 -92816131 + MLT1F1 LTR MaLR 124 506 -61 3705 84 18 6 chr9 25046501 25047011 -92815616 + MER4E LTR ERV1 1 516 -250 4378 149 12 26 chr9 25047461 25048201 -92814426 + L1MB3 LINE L1 5452 6181 -2 2039 208 26 38 chr9 25048655 25048914 -92813713 + L1MC3 LINE L1 6609 6861 -924 1956 117 3 69 chr9 25048914 25049247 -92813380 + AluSx SINE Alu 1 311 -1 2039 208 26 38 chr9 25049247 25049482 -92813145 + L1MC3 LINE L1 6861 7097 -688 245 328 43 0 chr9 25049482 25049598 -92813029 + MLT1F1 LTR MaLR 35 155 -412 2032 161 18 29 chr9 25049599 25049943 -92812684 + L1MC3 LINE L1 7240 7581 -204 2258 113 3 0 chr9 25049943 25050245 -92812382 + AluSx SINE Alu 1 303 -9 2032 161 18 29 chr9 25050245 25050284 -92812343 + L1MC3 LINE L1 7581 7619 -166 266 212 106 44 chr9 25050934 25051047 -92811580 - L2 LINE L2 -1 3312 3193 2080 134 0 0 chr9 25051280 25051571 -92811056 + AluSx SINE Alu 1 291 -21 495 123 0 203 chr9 25051587 25051725 -92810902 + L1MB3 LINE L1 5677 5786 -385 258 176 0 0 chr9 25051732 25051783 -92810844 + (TA)n Simple_repeat Simple_repeat 1 51 0 254 130 43 0 chr9 25051786 25051832 -92810795 - L1M2 LINE L1 -507 5793 5746 202 150 25 0 chr9 25051842 25051882 -92810745 + (TA)n Simple_repeat Simple_repeat 1 41 0 1315 147 4 37 chr9 25051883 25052128 -92810499 + L1MB3 LINE L1 5776 6012 -171 323 318 47 27 chr9 25052274 25052422 -92810205 + L1MEc LINE L1 2024 2174 -4222 297 164 0 41 chr9 25052428 25052501 -92810126 + L1MC3 LINE L1 7716 7785 0 * 1828 237 83 8 chr9 25052495 25053105 -92809522 + L1MEc LINE L1 2170 2776 -3439 994 219 4 82 chr9 25053110 25053343 -92809284 - MER58C DNA MER1_type 0 215 1 1396 225 66 12 chr9 25053356 25053778 -92808849 + L1MEc LINE L1 3325 3769 -2446 7493 93 5 0 chr9 25053892 25054875 -92807752 - HERVK14 LTR ERVK -4957 988 1 3804 103 16 51 chr9 25054875 25055488 -92807139 - LTR14B LTR ERVK 0 608 17 436 275 23 88 chr9 25055509 25055771 -92806856 - MER21B LTR ERV1 -611 252 8 492 225 108 25 chr9 25056130 25056250 -92806377 - MSTC LTR MaLR -298 130 1 1119 220 112 1 chr9 25058313 25058661 -92803966 - MLT1F1 LTR MaLR -147 395 1 599 331 37 37 chr9 25060672 25061022 -92801605 + MLT1I LTR MaLR 58 407 -2 22 70 0 0 chr9 25061360 25061403 -92801224 + AT_rich Low_complexity Low_complexity 1 43 0 724 121 24 116 chr9 25061414 25061621 -92801006 - L1MA7 LINE L1 0 6291 6104 494 269 58 36 chr9 25062014 25062342 -92800285 + MLT1H LTR MaLR 77 440 -115 694 261 6 0 chr9 25062929 25063094 -92799533 + MLT1J1 LTR MaLR 2 167 -279 277 299 0 23 chr9 25063844 25063931 -92798696 + MIR SINE MIR 61 145 -117 491 257 59 0 chr9 25063948 25064084 -92798543 - MER5A DNA MER1_type 0 189 46 1534 184 16 87 chr9 25064088 25064137 -92798490 - MLT2D LTR ERVL -9 405 354 324 48 0 0 chr9 25064137 25064179 -92798448 + (TG)n Simple_repeat Simple_repeat 2 43 0 1534 184 16 87 chr9 25064179 25064565 -92798062 - MLT2D LTR ERVL -60 354 1 511 107 27 0 chr9 25064715 25064790 -92797837 - AluSq SINE Alu -18 295 219 990 63 0 120 chr9 25064793 25064951 -92797676 - AluSq SINE Alu -174 139 1 414 0 0 0 chr9 25067040 25067086 -92795541 + (CA)n Simple_repeat Simple_repeat 2 47 0 1478 218 86 45 chr9 25067086 25067542 -92795085 + MLT1D LTR MaLR 28 505 0 1376 149 20 64 chr9 25068616 25068673 -92793954 + AluJo SINE Alu 60 118 -194 2268 45 0 45 chr9 25068673 25068965 -92793662 - AluY SINE Alu -23 288 10 1376 149 20 64 chr9 25068965 25069156 -92793471 + AluJo SINE Alu 118 297 -15 676 254 127 19 chr9 25069237 25069505 -92793122 + MLT1J2 LTR MaLR 1 297 -153 4408 182 73 13 chr9 25070738 25072283 -92790344 - L1MC2 LINE L1 0 6344 4721 248 71 89 89 chr9 25072625 25072681 -92789946 + MLT1I LTR MaLR 342 397 -12 758 237 66 9 chr9 25073457 25073668 -92788959 + MER58A DNA MER1_type 2 224 0 381 176 56 120 chr9 25073846 25073988 -92788639 + L1ME3A LINE L1 6027 6159 -11 1136 187 28 5 chr9 25074312 25074526 -92788101 + MER20 DNA MER1_type 1 219 0 286 252 63 36 chr9 25074531 25074659 -92787968 + MER5A DNA MER1_type 2 120 -58 554 294 86 69 chr9 25075041 25075520 -92787107 - L2 LINE L2 -14 3299 2813 191 289 22 44 chr9 25075546 25075636 -92786991 + MIR SINE MIR 2 89 -173 2182 112 0 20 chr9 25075638 25075943 -92786684 + AluSx SINE Alu 1 299 -13 461 162 55 60 chr9 25076009 25076191 -92786436 + MER58 DNA MER1_type 28 2412 -8 1667 144 42 0 chr9 25078567 25078851 -92783776 - MER58B DNA MER1_type 0 341 46 1442 221 42 63 chr9 25079277 25079423 -92783204 + MLT2B1 LTR ERVL 1 149 -371 1307 193 216 34 chr9 25079423 25079863 -92782764 - MLT2B1 LTR ERVL 0 520 1 1442 221 42 63 chr9 25079863 25080195 -92782432 + MLT2B1 LTR ERVL 149 469 -51 235 192 0 0 chr9 25080229 25080281 -92782346 + MLT2B1 LTR ERVL 462 513 -7 460 255 173 41 chr9 25080328 25080669 -92781958 + L2 LINE L2 2928 3313 0 252 0 0 0 chr9 25082957 25082985 -92779642 + (A)n Simple_repeat Simple_repeat 1 28 0 263 276 67 9 chr9 25082985 25083090 -92779537 + MER103 DNA DNA 1 111 -55 828 158 0 66 chr9 25084412 25084564 -92778063 + FRAM SINE Alu 4 145 -31 198 0 0 0 chr9 25084564 25084586 -92778041 + (T)n Simple_repeat Simple_repeat 1 22 0 558 339 41 9 chr9 25085108 25085329 -92777298 - MIR SINE MIR -1 261 34 259 355 37 71 chr9 25086030 25086382 -92776245 + L2 LINE L2 2812 3151 -121 1242 180 28 0 chr9 25087977 25088194 -92774433 + MER58A DNA MER1_type 2 224 0 842 97 0 8 chr9 25089028 25089152 -92773475 + MER107 DNA MER1_type 1 123 -74 306 36 0 55 chr9 25089300 25089355 -92773272 + (CAAAA)n Simple_repeat Simple_repeat 2 53 0 1372 97 57 48 chr9 25089383 25089611 -92773016 + MER30 DNA MER1_type 1 230 0 379 236 47 39 chr9 25089847 25089974 -92772653 + MIR SINE MIR 119 246 -16 405 335 88 21 chr9 25091563 25091802 -92770825 - MIR SINE MIR -6 256 2 264 285 15 66 chr9 25093330 25093467 -92769160 + MIR3 SINE MIR 1 130 -78 206 294 193 46 chr9 25093655 25093764 -92768863 + MIR SINE MIR 22 146 -116 1510 211 65 34 chr9 25095071 25095403 -92767224 + MSTD LTR MaLR 1 348 -48 3258 107 62 2 chr9 25095403 25095900 -92766727 + L1PA10 LINE L1 5642 6168 0 1510 211 65 34 chr9 25095900 25095951 -92766676 + MSTD LTR MaLR 348 396 0 356 213 86 72 chr9 25096051 25096172 -92766455 + MER5A DNA MER1_type 52 189 0 347 309 115 18 chr9 25096186 25096351 -92766276 - MER5A DNA MER1_type -6 183 3 306 107 0 0 chr9 25097627 25097683 -92764944 + (CA)n Simple_repeat Simple_repeat 2 57 0 208 119 48 0 chr9 25097963 25098005 -92764622 + A-rich Low_complexity Low_complexity 2 45 0 448 336 111 10 chr9 25098405 25098613 -92764014 + MIR SINE MIR 2 230 -32 346 261 96 21 chr9 25098782 25098933 -92763694 + MER5A DNA MER1_type 8 187 -2 239 194 69 28 chr9 25100209 25100281 -92762346 + MIR SINE MIR 132 206 -56 1909 103 46 28 chr9 25102866 25102976 -92759651 + AluSg SINE Alu 11 118 -192 213 65 0 0 chr9 25102976 25103007 -92759620 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1909 103 46 28 chr9 25103007 25103178 -92759449 + AluSg SINE Alu 118 297 -13 282 278 119 26 chr9 25103739 25103890 -92758737 + MIR3 SINE MIR 20 184 -24 216 0 0 0 chr9 25105155 25105179 -92757448 + (A)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 25107426 25107446 -92755181 + (A)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr9 25108837 25108879 -92753748 + AT_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chr9 25109050 25109091 -92753536 + AT_rich Low_complexity Low_complexity 1 41 0 304 330 55 0 chr9 25112310 25112401 -92750226 - MIR SINE MIR -139 123 28 239 320 0 48 chr9 25112447 25112550 -92750077 - MIR3 SINE MIR -6 202 105 230 125 21 0 chr9 25113278 25113326 -92749301 + (TG)n Simple_repeat Simple_repeat 1 49 0 1480 132 24 4 chr9 25113936 25114187 -92748440 - Tigger3(Golem) DNA MER2_type -3 3026 2771 538 165 134 16 chr9 25114184 25114311 -92748316 - Tigger3(Golem) DNA MER2_type -2887 142 1 * 2350 78 3 10 chr9 25114898 25115205 -92747422 - AluY SINE Alu -6 305 1 54 40 0 0 chr9 25115338 25115413 -92747214 + AT_rich Low_complexity Low_complexity 1 75 0 285 265 85 45 chr9 25115592 25115815 -92746812 + Charlie7 DNA MER1_type 358 589 -2023 360 0 0 0 chr9 25118248 25118288 -92744339 + (T)n Simple_repeat Simple_repeat 1 40 0 717 213 91 25 chr9 25118963 25119160 -92743467 + MER58C DNA MER1_type 2 211 -4 959 213 38 5 chr9 25119382 25119593 -92743034 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr9 25120712 25120733 -92741894 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr9 25121387 25121417 -92741210 + (A)n Simple_repeat Simple_repeat 1 30 0 528 238 41 8 chr9 25121483 25121605 -92741022 - MER5A DNA MER1_type -63 126 1 2129 119 3 22 chr9 25122356 25122667 -92739960 - AluSp SINE Alu -8 305 1 1646 158 134 3 chr9 25123998 25124296 -92738331 - MER1B DNA MER1_type 0 337 1 415 306 46 9 chr9 25124709 25124817 -92737810 + L2 LINE L2 3156 3267 -5 517 282 78 13 chr9 25126702 25126928 -92735699 - MIR SINE MIR -19 243 3 2143 93 17 0 chr9 25127083 25127373 -92735254 - AluSx SINE Alu -17 295 1 376 324 56 21 chr9 25130536 25130678 -92731949 - MIR3 SINE MIR -17 191 45 312 344 123 7 chr9 25132295 25132449 -92730178 + MIR SINE MIR 19 190 -72 380 286 98 0 chr9 25132551 25132663 -92729964 - MIR SINE MIR -8 254 132 2166 64 46 4 chr9 25133602 25133883 -92728744 - AluY SINE Alu -18 293 1 2014 34 0 0 chr9 25134513 25134750 -92727877 + L1PA5 LINE L1 5905 6141 -13 261 313 62 42 chr9 25136160 25136304 -92726323 + L2 LINE L2 3118 3264 -8 22 0 0 0 chr9 25138232 25138254 -92724373 + AT_rich Low_complexity Low_complexity 1 22 0 2196 112 0 7 chr9 25138259 25138562 -92724065 - AluSq SINE Alu -12 301 1 1833 136 31 21 chr9 25138615 25138902 -92723725 - AluSg SINE Alu -20 290 1 276 305 45 51 chr9 25139235 25139412 -92723215 + MER5A DNA MER1_type 1 176 -13 2048 128 111 20 chr9 25140054 25140452 -92722175 + Tigger2a DNA MER2_type 1 434 0 316 22 0 0 chr9 25141512 25141558 -92721069 - L1P LINE L1 -849 5306 5261 3733 35 15 4 chr9 25141558 25142015 -92720612 + L1PA3 LINE L1 5693 6155 0 271 317 55 33 chr9 25145982 25146165 -92716462 + MER5A DNA MER1_type 3 189 0 454 257 95 14 chr9 25148431 25148579 -92714048 + MER117 DNA MER1_type 1 160 -37 1191 235 50 0 chr9 25148841 25149143 -92713484 + MER58B DNA MER1_type 10 326 -15 380 220 45 98 chr9 25151145 25151277 -92711350 + MIR SINE MIR 53 177 -85 255 170 38 19 chr9 25151562 25151615 -92711012 - MER5B DNA MER1_type 0 178 125 189 213 0 0 chr9 25151678 25151725 -92710902 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 360 243 0 0 chr9 25151725 25151799 -92710828 - FLAM SINE Alu -17 116 43 258 227 80 34 chr9 25151799 25151887 -92710740 - MER5B DNA MER1_type -86 92 1 211 295 72 78 chr9 25152746 25152939 -92709688 - MIR SINE MIR -58 204 13 198 0 0 0 chr9 25153541 25153563 -92709064 + (A)n Simple_repeat Simple_repeat 1 22 0 1897 145 0 14 chr9 25153717 25154014 -92708613 - AluSx SINE Alu -19 293 1 25 51 0 0 chr9 25154458 25154497 -92708130 + AT_rich Low_complexity Low_complexity 1 39 0 345 308 164 21 chr9 25154767 25155053 -92707574 - L2 LINE L2 -34 3279 2953 282 284 93 76 chr9 25155347 25155583 -92707044 + L2 LINE L2 2937 3176 -96 421 239 71 49 chr9 25158700 25158884 -92703743 - MIR SINE MIR -57 205 18 1162 273 77 14 chr9 25159945 25160389 -92702238 + LTR38 LTR ERV1 85 556 0 189 283 43 0 chr9 25162795 25162841 -92699786 - L3b LINE CR1 -165 1418 1371 186 71 0 0 chr9 25163187 25163215 -92699412 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1593 191 24 14 chr9 25163363 25163657 -92698970 + AluJo SINE Alu 1 297 -15 387 131 47 131 chr9 25165497 25165604 -92697023 - Tigger7 DNA MER2_type 0 2487 2390 1098 190 59 16 chr9 25165608 25165861 -92696766 - Tigger7 DNA MER2_type -2221 266 3 22 0 0 0 chr9 25166345 25166367 -92696260 + AT_rich Low_complexity Low_complexity 1 22 0 1481 144 29 18 chr9 25167320 25167597 -92695030 + L1MB4 LINE L1 5900 6179 -1 2105 116 38 0 chr9 25170898 25171190 -92691437 - AluSx SINE Alu -9 303 1 513 245 18 89 chr9 25172832 25172881 -92689746 + MER34 LTR ERV1 1 52 -490 1910 155 0 31 chr9 25172881 25173198 -92689429 - AluSx SINE Alu -5 307 1 513 245 18 89 chr9 25173198 25173430 -92689197 + MER34 LTR ERV1 52 262 -280 22 0 0 0 chr9 25174653 25174675 -92687952 + AT_rich Low_complexity Low_complexity 1 22 0 337 261 43 26 chr9 25175299 25175414 -92687213 - MER5A DNA MER1_type -65 124 8 413 327 30 74 chr9 25175775 25175977 -92686650 + MIR3 SINE MIR 8 200 -8 288 297 76 14 chr9 25177163 25177308 -92685319 + MER103 DNA DNA 2 155 -11 3508 175 42 9 chr9 25177384 25178123 -92684504 + L1MA6 LINE L1 5529 6291 -9 403 91 27 45 chr9 25178123 25178233 -92684394 + (TA)n Simple_repeat Simple_repeat 1 108 0 217 235 224 12 chr9 25179438 25179523 -92683104 - MIR SINE MIR -62 146 44 21 36 0 0 chr9 25183816 25183844 -92678783 + AT_rich Low_complexity Low_complexity 1 28 0 1887 122 32 4 chr9 25185934 25186213 -92676414 + AluSx SINE Alu 1 287 -25 196 53 53 0 chr9 25187624 25187662 -92674965 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 188 281 122 76 chr9 25188474 25188777 -92673850 - L2 LINE L2 0 3313 2997 1665 199 66 49 chr9 25188785 25189273 -92673354 + MLT1D LTR MaLR 1 496 -9 640 264 254 0 chr9 25189286 25189652 -92672975 - L2 LINE L2 -323 2990 2526 198 91 0 0 chr9 25189852 25189885 -92672742 + (TA)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr9 25190970 25190993 -92671634 + (A)n Simple_repeat Simple_repeat 1 23 0 2323 86 0 10 chr9 25192365 25192678 -92669949 + AluY SINE Alu 1 310 -1 298 174 0 0 chr9 25193710 25193756 -92668871 + Alu SINE Alu 4 49 -253 309 151 0 0 chr9 25193761 25193814 -92668813 + Alu SINE Alu 239 291 -11 183 222 253 20 chr9 25193823 25193922 -92668705 - MIR SINE MIR -93 169 48 290 250 31 21 chr9 25194952 25195048 -92667579 - L2 LINE L2 -16 3256 3160 207 0 0 0 chr9 25195175 25195198 -92667429 + (A)n Simple_repeat Simple_repeat 1 23 0 486 0 0 0 chr9 25198415 25198469 -92664158 + (A)n Simple_repeat Simple_repeat 1 54 0 1926 146 19 29 chr9 25199939 25200116 -92662511 - AluJb SINE Alu 0 312 138 2200 73 30 13 chr9 25200116 25200418 -92662209 - AluY SINE Alu -4 307 1 1926 146 19 29 chr9 25200418 25200555 -92662072 - AluJb SINE Alu -174 138 1 1251 116 8 139 chr9 25200766 25201033 -92661594 + AluSg/x SINE Alu 78 309 -1 231 315 99 77 chr9 25202336 25202347 -92660280 - L2 LINE L2 -40 3232 3223 2331 62 0 16 chr9 25202347 25202651 -92659976 + AluY SINE Alu 1 299 -12 231 315 99 77 chr9 25202651 25202861 -92659766 - L2 LINE L2 -49 3223 3006 260 315 142 16 chr9 25203067 25203194 -92659433 - MIR3 SINE MIR -32 176 34 201 195 0 0 chr9 25205216 25205257 -92657370 + A-rich Low_complexity Low_complexity 1 41 0 249 279 115 96 chr9 25205609 25205697 -92656930 - MIR SINE MIR -31 231 146 1971 97 104 0 chr9 25205697 25205966 -92656661 - AluSq SINE Alu -16 297 1 249 279 115 96 chr9 25205966 25206085 -92656542 - MIR SINE MIR -116 146 20 462 248 18 0 chr9 25206127 25206236 -92656391 + MER5B DNA MER1_type 68 178 0 225 329 12 0 chr9 25206740 25206822 -92655805 + MIR SINE MIR 113 195 -67 1996 181 110 27 chr9 25206848 25207443 -92655184 - Tigger7 DNA MER2_type -34 2553 1 271 230 149 0 chr9 25209831 25209905 -92652722 + MLT1B LTR MaLR 7 91 -299 330 118 0 0 chr9 25209921 25209972 -92652655 + MER47A DNA MER2_type 73 123 -243 1217 185 38 58 chr9 25210004 25210328 -92652299 + MLT1B LTR MaLR 83 390 0 1950 150 22 27 chr9 25210416 25210783 -92651844 + MER47A DNA MER2_type 1 365 -1 1534 195 0 25 chr9 25211195 25211513 -92651114 - AluJo SINE Alu -2 310 1 2132 116 3 7 chr9 25213700 25214003 -92648624 + AluSx SINE Alu 5 306 -6 182 247 82 55 chr9 25215462 25215535 -92647092 + MIR SINE MIR 69 143 -119 2292 110 3 3 chr9 25216083 25216393 -92646234 + AluSp SINE Alu 4 313 0 790 183 52 70 chr9 25216765 25216978 -92645649 + MIR SINE MIR 30 238 -24 259 227 165 10 chr9 25217781 25217878 -92644749 - MIR SINE MIR -61 147 36 228 372 61 7 chr9 25220730 25220878 -92641749 - MIR3 SINE MIR -17 191 36 926 199 206 27 chr9 25221041 25221474 -92641153 + Charlie1b DNA MER1_type 1 523 0 675 99 0 0 chr9 25222592 25222714 -92639913 - AluSg/x SINE Alu 0 316 195 318 283 184 9 chr9 25222934 25223146 -92639481 - L1MC/D LINE L1 -2024 5784 5536 184 311 67 83 chr9 25223179 25223372 -92639255 + MIR3 SINE MIR 9 198 -10 1380 200 0 8 chr9 25224788 25225038 -92637589 + AluJo SINE Alu 1 248 -64 372 344 63 11 chr9 25226675 25226864 -92635763 + L2 LINE L2 3114 3312 -1 182 57 0 86 chr9 25228212 25228247 -92634380 - L3 LINE CR1 -813 764 733 31 0 0 0 chr9 25228833 25228864 -92633763 + AT_rich Low_complexity Low_complexity 1 31 0 341 198 170 19 chr9 25229098 25229204 -92633423 + MIR SINE MIR 20 141 -67 261 0 0 0 chr9 25234752 25234781 -92627846 + (A)n Simple_repeat Simple_repeat 1 29 0 1826 192 66 6 chr9 25235007 25235372 -92627255 + MER47B DNA MER2_type 1 387 -31 468 153 0 12 chr9 25236744 25236829 -92625798 - MER45A DNA AcHobo 0 178 95 186 43 0 0 chr9 25240131 25240154 -92622473 + (CGG)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr9 25240191 25240214 -92622413 + (CCGCG)n Simple_repeat Simple_repeat 1 23 0 27 0 0 0 chr9 25240345 25240372 -92622255 + GC_rich Low_complexity Low_complexity 1 27 0 212 86 29 0 chr9 25243641 25243676 -92618951 + (CCCCAG)n Simple_repeat Simple_repeat 4 39 0 216 0 0 0 chr9 25249036 25249060 -92613567 + (CA)n Simple_repeat Simple_repeat 2 25 0 280 255 11 21 chr9 25249713 25249807 -92612820 + CT-rich Low_complexity Low_complexity 2 94 0 23 0 0 0 chr9 25251941 25251964 -92610663 + AT_rich Low_complexity Low_complexity 1 23 0 521 319 105 4 chr9 25252773 25253011 -92609616 + MIR SINE MIR 1 262 0 237 139 0 0 chr9 25255081 25255124 -92607503 + (TG)n Simple_repeat Simple_repeat 1 43 0 183 394 19 0 chr9 25255183 25255287 -92607340 - L2 LINE L2 -427 2887 2782 246 333 20 20 chr9 25255740 25255842 -92606785 + MIR3 SINE MIR 4 105 -103 746 253 160 0 chr9 25255888 25256082 -92606545 - MIR SINE MIR -27 235 11 314 253 72 0 chr9 25256473 25256556 -92606071 + L1ME4a LINE L1 5788 5876 -245 357 254 42 49 chr9 25256574 25256716 -92605911 + L1ME4a LINE L1 5978 6118 -3 674 271 108 5 chr9 25258470 25258684 -92603943 + MIR SINE MIR 15 250 -12 388 324 28 45 chr9 25258707 25258883 -92603744 - MER5B DNA MER1_type 0 178 6 302 370 82 7 chr9 25262650 25262796 -92599831 + L2 LINE L2 3111 3267 -5 283 290 184 68 chr9 25265351 25265558 -92597069 + MIR SINE MIR 30 260 -2 24 0 0 0 chr9 25266303 25266327 -92596300 + AT_rich Low_complexity Low_complexity 1 24 0 204 111 0 0 chr9 25268654 25268690 -92593937 + (CCA)n Simple_repeat Simple_repeat 2 37 0 594 82 0 0 chr9 25269157 25269242 -92593385 + (TC)n Simple_repeat Simple_repeat 1 85 0 204 40 0 0 chr9 25269276 25269301 -92593326 + (CA)n Simple_repeat Simple_repeat 1 25 0 2182 88 7 10 chr9 25270883 25271179 -92591448 - AluY SINE Alu -16 295 1 24 77 0 0 chr9 25271398 25271450 -92591177 + AT_rich Low_complexity Low_complexity 1 52 0 256 305 113 13 chr9 25272880 25273031 -92589596 + MIR SINE MIR 63 228 -34 521 267 37 130 chr9 25273142 25273211 -92589416 + MLT1J LTR MaLR 108 182 -329 2030 141 0 3 chr9 25273211 25273508 -92589119 + AluSx SINE Alu 1 296 -16 521 267 37 130 chr9 25273508 25273846 -92588781 + MLT1J LTR MaLR 182 477 -34 685 244 0 32 chr9 25274329 25274485 -92588142 - FRAM SINE Alu -19 157 7 556 314 44 13 chr9 25275067 25275293 -92587334 + MIR SINE MIR 29 261 -1 258 254 45 15 chr9 25275845 25275912 -92586715 + MIR3 SINE MIR 89 157 -51 931 182 223 20 chr9 25276305 25276552 -92586075 - AluJb SINE Alu -5 297 1 851 187 43 32 chr9 25276610 25276797 -92585830 + MER5A DNA MER1_type 1 189 0 1089 253 35 55 chr9 25276819 25277203 -92585424 + MLT1H LTR MaLR 54 505 -44 217 300 0 0 chr9 25277546 25277596 -92585031 - MIR SINE MIR -127 81 32 2404 74 0 0 chr9 25277854 25278153 -92584474 + AluY SINE Alu 1 299 -12 31544 110 11 55 chr9 25279043 25285485 -92577142 - L1PA7 LINE L1 0 6154 12 1628 216 89 45 chr9 25285670 25286142 -92576485 - MLT1D LTR MaLR -12 493 1 262 200 47 47 chr9 25286885 25286970 -92575657 - HAL1b LINE L1 -1 1347 1263 991 230 121 32 chr9 25287023 25287462 -92575165 - HAL1b LINE L1 -262 1086 609 246 317 19 19 chr9 25287598 25287702 -92574925 - HAL1b LINE L1 -849 499 396 12716 186 37 14 chr9 25288102 25292332 -92570295 + L1PB2 LINE L1 2539 6867 0 512 212 89 22 chr9 25292466 25292645 -92569982 - L1MB8 LINE L1 -41 6137 5947 275 173 0 0 chr9 25292651 25292703 -92569924 + L1M4 LINE L1 5676 5727 -447 395 326 92 20 chr9 25292923 25292985 -92569642 + MIR SINE MIR 3 59 -203 1800 150 76 20 chr9 25292985 25293339 -92569288 + THE1C LTR MaLR 1 374 -1 395 326 92 20 chr9 25293339 25293472 -92569155 + MIR SINE MIR 59 212 -50 4089 179 35 17 chr9 25293520 25294357 -92568270 - L1MB2 LINE L1 -2 6169 5318 5672 168 68 18 chr9 25294373 25296283 -92566344 - L1PB2 LINE L1 -3 6148 4141 536 247 21 37 chr9 25296288 25296478 -92566149 - L1MB2 LINE L1 -816 5330 5144 546 278 111 61 chr9 25296592 25297016 -92565611 - L1MB8 LINE L1 -2047 5761 5317 26 0 0 0 chr9 25297030 25297056 -92565571 + AT_rich Low_complexity Low_complexity 1 26 0 245 104 0 0 chr9 25297562 25297610 -92565017 - L1MA9 LINE L1 -11 6301 6254 7084 151 7 32 chr9 25297649 25300035 -92562592 - L1MA5A LINE L1 -10 6287 3961 2303 144 8 3 chr9 25300053 25300415 -92562212 - THE1B LTR MaLR 0 364 1 10419 103 32 35 chr9 25300415 25301999 -92560628 - THE1B-int LTR MaLR 0 1580 1 521 96 0 14 chr9 25301999 25302072 -92560555 - THE1B LTR MaLR 0 375 304 1522 266 19 24 chr9 25302091 25302661 -92559966 - L1M1 LINE L1 -4501 1881 1228 2467 217 26 2 chr9 25302661 25303158 -92559469 + MLT2B1 LTR ERVL 12 520 0 256 236 37 60 chr9 25303159 25303291 -92559336 - L1M4c LINE L1 -3980 2754 2627 1650 185 3 23 chr9 25303291 25303593 -92559034 - AluJo SINE Alu -16 296 1 256 236 37 60 chr9 25303593 25303676 -92558951 - L1M4c LINE L1 -4107 2627 2544 811 236 23 110 chr9 25303706 25303852 -92558775 + AluJo SINE Alu 1 107 -205 278 26 26 0 chr9 25303852 25303891 -92558736 + (TA)n Simple_repeat Simple_repeat 2 41 0 811 236 23 110 chr9 25303891 25304053 -92558574 + AluJo SINE Alu 107 282 -30 1914 156 0 0 chr9 25304071 25304353 -92558274 + AluSx SINE Alu 1 282 -30 204 97 0 0 chr9 25304369 25304400 -92558227 + (TA)n Simple_repeat Simple_repeat 2 32 0 2977 273 34 34 chr9 25304450 25305676 -92556951 - L1M4c LINE L1 -4289 2443 1531 2165 180 36 10 chr9 25305676 25306093 -92556534 - MSTA LTR MaLR 0 428 1 2977 273 34 34 chr9 25306093 25307034 -92555593 - L1M4c LINE L1 -5201 1531 591 180 0 0 0 chr9 25307034 25307054 -92555573 + (TC)n Simple_repeat Simple_repeat 1 20 0 390 288 77 38 chr9 25307116 25307676 -92554951 - L1M4 LINE L1 -1432 4714 4133 781 315 55 41 chr9 25307689 25308032 -92554595 + L2 LINE L2 2963 3310 -3 22 35 0 0 chr9 25308218 25308247 -92554380 + AT_rich Low_complexity Low_complexity 1 29 0 808 305 53 40 chr9 25308410 25308784 -92553843 - L1ME3A LINE L1 -14 6156 5778 1763 166 3 3 chr9 25309266 25309556 -92553071 - AluSx SINE Alu -22 290 1 24 32 0 0 chr9 25310352 25310383 -92552244 + AT_rich Low_complexity Low_complexity 1 31 0 1414 160 19 0 chr9 25310409 25310677 -92551950 - L1MA4 LINE L1 -5 6295 6023 2034 115 19 16 chr9 25310684 25310996 -92551631 - AluSq SINE Alu 0 313 1 37 52 0 0 chr9 25311109 25311167 -92551460 + AT_rich Low_complexity Low_complexity 1 58 0 658 120 0 0 chr9 25311390 25311490 -92551137 - AluY SINE Alu -1 310 211 237 308 93 0 chr9 25311558 25311665 -92550962 + HAL1 LINE L1 23 139 -2368 7441 44 3 0 chr9 25312327 25314030 -92548597 - L1PA4 LINE L1 -4 6151 4445 471 298 48 43 chr9 25314137 25314345 -92548282 + MIR SINE MIR 52 260 -2 22 0 0 0 chr9 25314998 25315020 -92547607 + AT_rich Low_complexity Low_complexity 1 22 0 266 226 71 0 chr9 25316202 25316286 -92546341 - L1MC5 LINE L1 -36 7925 7836 2104 82 36 20 chr9 25316509 25316812 -92545815 + AluY SINE Alu 3 310 -1 1775 174 86 8 chr9 25316813 25317175 -92545452 - MER57A LTR ERV1 -13 390 1 2789 200 24 9 chr9 25317175 25317804 -92544823 + LTR48B LTR ERV1 7 644 0 1088 213 79 18 chr9 25317840 25318168 -92544459 - L1ME3A LINE L1 -168 6002 5655 47 82 0 0 chr9 25318754 25318864 -92543763 + AT_rich Low_complexity Low_complexity 1 110 0 290 317 19 19 chr9 25319114 25319218 -92543409 + MIR SINE MIR 47 150 -112 733 171 181 40 chr9 25319306 25319505 -92543122 - AluJo SINE Alu -3 309 83 423 282 28 80 chr9 25319657 25319870 -92542757 - MIR SINE MIR 0 262 61 25 0 0 0 chr9 25320143 25320168 -92542459 + AT_rich Low_complexity Low_complexity 1 25 0 421 211 202 0 chr9 25320645 25320754 -92541873 + FLAM_A SINE Alu 1 131 -2 2300 187 30 82 chr9 25321043 25321620 -92541007 + MLT2B3 LTR ERVL 8 554 0 254 240 194 23 chr9 25322626 25322755 -92539872 + MER5A DNA MER1_type 35 185 -4 1329 182 64 8 chr9 25322947 25323268 -92539359 + MLT2C2 LTR ERVL 3 332 -65 270 175 0 32 chr9 25323266 25323329 -92539298 - AluSp SINE Alu -170 133 73 * 646 94 31 10 chr9 25323332 25323428 -92539199 - AluJo SINE Alu -210 102 5 876 228 64 20 chr9 25324233 25324483 -92538144 + MIR SINE MIR 2 262 0 610 34 91 23 chr9 25325684 25325772 -92536855 - L1PA8 LINE L1 -5 6167 6074 388 39 0 0 chr9 25325881 25325932 -92536695 + MADE1 DNA Mariner 1 51 -29 619 296 27 17 chr9 25326433 25326734 -92535893 - L1M4 LINE L1 -2499 3647 3344 5299 45 9 0 chr9 25326849 25327534 -92535093 - L1PA4 LINE L1 -1412 4734 4044 * 6848 39 7 0 chr9 25327532 25328939 -92533688 + L1PA4 LINE L1 4708 6120 -35 3982 68 9 0 chr9 25330520 25331048 -92531579 + L1PA5 LINE L1 5607 6139 -15 994 195 0 0 chr9 25331176 25331345 -92531282 + FAM SINE Alu 1 169 -6 311 247 52 10 chr9 25331406 25331503 -92531124 + MER101B LTR ERV1 1 101 -469 1022 241 3 68 chr9 25331697 25332008 -92530619 + LTR51 LTR ERV1 222 512 -159 273 119 48 0 chr9 25332270 25332312 -92530315 + MER21B LTR ERV1 53 96 -767 909 285 14 109 chr9 25332448 25333228 -92529399 + L1ME LINE L1 6 711 -5359 838 218 76 30 chr9 25333245 25333354 -92529273 + L1ME LINE L1 2102 2205 -3875 1856 164 0 37 chr9 25333354 25333678 -92528949 + AluJb SINE Alu 1 312 0 838 218 76 30 chr9 25333678 25334003 -92528624 + L1ME LINE L1 2205 2556 -3524 4081 106 117 97 chr9 25334003 25335500 -92527127 - pTR5 LTR ERV1 -9 2429 63 1444 246 102 3 chr9 25335504 25336070 -92526557 + L1ME LINE L1 4182 4803 -1277 688 255 60 23 chr9 25336118 25336334 -92526293 - MER58A DNA MER1_type 0 224 1 1366 163 130 4 chr9 25336400 25336677 -92525950 - MER2 DNA MER2_type -31 314 3 4677 96 140 6 chr9 25336802 25337530 -92525097 - LTR12 LTR ERV1 0 826 1 58963 86 3 7 chr9 25337530 25345912 -92516715 - HERV9 LTR ERV1 0 8399 55 4906 68 9 194 chr9 25345940 25346953 -92515674 - LTR12 LTR ERV1 0 826 1 971 239 59 33 chr9 25347488 25348030 -92514597 + L1ME LINE L1 4802 5366 -738 1961 176 0 3 chr9 25348030 25348331 -92514296 - AluSx SINE Alu -11 301 2 971 239 59 33 chr9 25348331 25348380 -92514247 + L1ME LINE L1 5366 5412 -692 32 0 0 0 chr9 25348393 25348425 -92514202 + AT_rich Low_complexity Low_complexity 1 32 0 2394 136 0 19 chr9 25348571 25348990 -92513637 - L1MA3 LINE L1 0 6305 5895 695 95 0 0 chr9 25349042 25349147 -92513480 + L1MA3 LINE L1 5770 5874 -431 366 290 95 18 chr9 25350281 25350450 -92512177 + L1ME LINE L1 5292 5473 -2335 548 184 6 78 chr9 25350510 25350689 -92511938 + L1MC4 LINE L1 7869 8034 -8 320 272 160 24 chr9 25350808 25350916 -92511711 + L1ME LINE L1 5499 5591 -530 276 39 39 20 chr9 25350916 25350967 -92511660 + (CATTT)n Simple_repeat Simple_repeat 4 55 0 320 272 160 24 chr9 25350967 25351145 -92511482 + L1ME LINE L1 5591 5824 -297 21 0 0 0 chr9 25351343 25351364 -92511263 + AT_rich Low_complexity Low_complexity 1 21 0 1922 94 11 34 chr9 25351365 25351631 -92510996 - AluSx SINE Alu -17 295 36 23 0 0 0 chr9 25351798 25351821 -92510806 + AT_rich Low_complexity Low_complexity 1 23 0 325 252 9 35 chr9 25352755 25352870 -92509757 - MER94 DNA DNA 0 134 23 649 157 27 68 chr9 25353001 25353148 -92509479 - FRAM SINE Alu -23 153 13 642 188 131 74 chr9 25353302 25353478 -92509149 - AluJb SINE Alu -38 274 89 26 64 0 0 chr9 25354178 25354225 -92508402 + AT_rich Low_complexity Low_complexity 1 47 0 36 23 0 0 chr9 25355852 25355895 -92506732 + AT_rich Low_complexity Low_complexity 1 43 0 11069 27 0 0 chr9 25356502 25357888 -92504739 - L1P LINE L1 -1999 4147 2762 3780 16 9 0 chr9 25358302 25358743 -92503884 + L1PA2 LINE L1 5711 6155 0 235 345 0 24 chr9 25360407 25360491 -92502136 - L3 LINE CR1 -37 1540 1459 1971 161 40 13 chr9 25361488 25361860 -92500767 - MER61D LTR ERV1 -6 495 114 6856 117 71 10 chr9 25361902 25362231 -92500396 - MER61D-int LTR ERV1 0 5217 4910 291 28 0 0 chr9 25362231 25362267 -92500360 + (CAA)n Simple_repeat Simple_repeat 2 37 0 6856 117 71 10 chr9 25362267 25363074 -92499553 - MER61D-int LTR ERV1 -307 4910 4011 10158 97 35 16 chr9 25363074 25363193 -92499434 - MER61D-int LTR ERV1 -1316 3901 3786 2272 118 0 7 chr9 25363193 25363499 -92499128 - AluSx SINE Alu -8 304 1 10158 97 35 16 chr9 25363499 25365048 -92497579 - MER61D-int LTR ERV1 -1431 3786 2201 734 152 62 7 chr9 25365028 25365173 -92497454 - MER61D-int LTR ERV1 -3338 4199 4047 * 3143 185 41 44 chr9 25365164 25366692 -92495935 - MER61D-int LTR ERV1 -3577 2006 183 269 254 53 35 chr9 25366722 25366836 -92495791 - MER61D-int LTR ERV1 -6475 521 406 539 204 44 29 chr9 25366853 25366990 -92495637 - MER61D-int LTR ERV1 -5077 140 2 2158 157 40 38 chr9 25366990 25367385 -92495242 - MER61D LTR ERV1 0 501 106 26 0 0 0 chr9 25367463 25367489 -92495138 + AT_rich Low_complexity Low_complexity 1 26 0 2244 122 0 0 chr9 25367786 25368089 -92494538 - AluSc SINE Alu -6 303 1 22 70 0 0 chr9 25368335 25368378 -92494249 + AT_rich Low_complexity Low_complexity 1 43 0 1982 155 0 0 chr9 25368839 25369143 -92493484 - AluSx SINE Alu -8 304 1 679 297 126 10 chr9 25369384 25369694 -92492933 - L2 LINE L2 0 3313 2968 264 279 59 44 chr9 25369712 25369848 -92492779 - MIR SINE MIR -50 212 75 409 303 59 26 chr9 25369881 25370033 -92492594 + MIR SINE MIR 74 230 -32 1549 175 104 0 chr9 25370060 25370368 -92492259 + MER58B DNA MER1_type 1 340 -1 186 118 0 0 chr9 25370418 25370452 -92492175 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 4811 129 9 11 chr9 25370452 25371235 -92491392 - L1MA5A LINE L1 -9 6288 5508 1332 177 5 0 chr9 25371690 25371905 -92490722 - AluJb SINE Alu -12 300 85 394 310 110 32 chr9 25371927 25372410 -92490217 - L1MC/D LINE L1 -2012 5796 5271 22 35 0 0 chr9 25372789 25372818 -92489809 + AT_rich Low_complexity Low_complexity 1 29 0 246 302 63 0 chr9 25372818 25372944 -92489683 - L1ME3A LINE L1 -13 6157 6024 271 312 0 11 chr9 25373055 25373148 -92489479 - L1MC/D LINE L1 -2053 4093 4002 2333 71 0 0 chr9 25374336 25374619 -92488008 - AluY SINE Alu -17 294 12 9699 123 41 8 chr9 25374776 25376293 -92486334 + Tigger1 DNA MER2_type 23 1589 -829 306 101 30 30 chr9 25377511 25377610 -92485017 + (TA)n Simple_repeat Simple_repeat 2 100 0 2375 159 9 16 chr9 25377708 25378147 -92484480 + Tigger1 DNA MER2_type 1577 2012 -406 434 236 137 47 chr9 25378171 25378404 -92484223 - L1MC/D LINE L1 -3093 3053 2800 530 304 108 30 chr9 25378410 25378772 -92483855 - L1MC4a LINE L1 -1960 5848 5459 1598 211 141 65 chr9 25378776 25379358 -92483269 + MLT1E2 LTR MaLR 1 626 0 2012 143 76 15 chr9 25379877 25380220 -92482407 + THE1B LTR MaLR 1 364 0 284 67 67 0 chr9 25380407 25380449 -92482178 - MLT2B2 LTR ERVL 0 515 471 1538 186 48 18 chr9 25380449 25380529 -92482098 - Tigger2 DNA MER2_type 0 2718 2642 2126 130 0 0 chr9 25380529 25380828 -92481799 + AluY SINE Alu 1 299 -12 1538 186 48 18 chr9 25380828 25381081 -92481546 - Tigger2 DNA MER2_type -76 2642 2375 28452 125 16 67 chr9 25381224 25382193 -92480434 - L1P LINE L1 -1075 5071 4055 5312 167 27 30 chr9 25382193 25383267 -92479360 + MER11C LTR ERVK 1 1071 0 28452 125 16 67 chr9 25383267 25387637 -92474990 - L1P LINE L1 -2091 4055 1 2208 119 0 7 chr9 25387657 25387967 -92474660 - AluSg SINE Alu -2 308 1 243 220 55 18 chr9 25387971 25388080 -92474547 - L1P LINE L1 -734 5420 5308 1973 168 35 0 chr9 25388100 25388474 -92474153 - L1PB4 LINE L1 0 6156 5770 1610 174 4 14 chr9 25388525 25388801 -92473826 - AluJo SINE Alu -39 273 1 562 244 42 115 chr9 25388992 25389541 -92473086 - L1MC4a LINE L1 -1156 4990 4482 1511 205 28 9 chr9 25389559 25389886 -92472741 - L1M4 LINE L1 -460 6216 5884 491 162 31 0 chr9 25389889 25390085 -92472542 + (TA)n Simple_repeat Simple_repeat 1 202 0 1128 201 7 44 chr9 25390085 25390378 -92472249 - L1M4 LINE L1 -904 5740 5459 4005 249 46 29 chr9 25390394 25390819 -92471808 - L1M4 LINE L1 -5305 1237 821 228 35 0 0 chr9 25390819 25390848 -92471779 + (TG)n Simple_repeat Simple_repeat 2 30 0 4005 249 46 29 chr9 25390848 25391633 -92470994 - L1M4 LINE L1 -5721 821 6 1206 137 0 0 chr9 25391905 25392073 -92470554 + AluSg1 SINE Alu 4 171 -138 361 283 28 0 chr9 25392079 25392185 -92470442 + MIR SINE MIR 104 212 -50 226 323 85 30 chr9 25393588 25393773 -92468854 - MIR SINE MIR -50 212 18 2152 133 7 0 chr9 25393785 25394094 -92468533 - AluSx SINE Alu -1 311 1 780 261 10 15 chr9 25394574 25394769 -92467858 + LTR33 LTR ERVL 1 194 -327 454 176 157 10 chr9 25394922 25395024 -92467603 + LTR33 LTR ERVL 405 521 0 2279 70 0 3 chr9 25395302 25395620 -92467007 + AluY SINE Alu 1 317 0 3686 209 38 17 chr9 25396042 25396931 -92465696 + L1ME1 LINE L1 5254 6161 -5 430 35 0 0 chr9 25397594 25397652 -92464975 + L1PA2 LINE L1 6098 6155 0 223 304 180 3 chr9 25398272 25398426 -92464201 - MIR SINE MIR -18 244 49 1980 153 3 3 chr9 25399053 25399361 -92463266 - AluJb SINE Alu 0 312 5 207 0 0 0 chr9 25399792 25399815 -92462812 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 458 297 43 7 chr9 25402577 25402715 -92459912 + MIR SINE MIR 20 162 -100 21 0 0 0 chr9 25403442 25403463 -92459164 + AT_rich Low_complexity Low_complexity 1 21 0 2594 102 3 6 chr9 25403758 25404121 -92458506 - THE1B LTR MaLR -2 362 1 560 226 95 0 chr9 25404691 25404828 -92457799 + MER3 DNA MER1_type 1 150 -59 4806 170 37 34 chr9 25404842 25405804 -92456823 - L1MA4 LINE L1 0 6300 5342 2068 79 0 4 chr9 25405804 25406057 -92456570 + AluSc SINE Alu 14 265 -44 216 0 0 0 chr9 25406060 25406084 -92456543 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 192 40 0 0 chr9 25406086 25406111 -92456516 + (TA)n Simple_repeat Simple_repeat 1 25 0 4806 170 37 34 chr9 25406111 25406574 -92456053 - L1MA4 LINE L1 -959 5341 4843 19631 171 43 8 chr9 25406577 25406662 -92455965 + L1MA1 LINE L1 13 94 -7471 182 88 0 29 chr9 25406662 25406696 -92455931 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 19631 171 43 8 chr9 25406696 25408264 -92454363 + L1MA1 LINE L1 94 1606 -5959 369 0 0 0 chr9 25408264 25408305 -92454322 + (GA)n Simple_repeat Simple_repeat 2 42 0 19631 171 43 8 chr9 25408305 25412195 -92450432 + L1MA1 LINE L1 1606 5752 -1813 23958 81 9 7 chr9 25412198 25418329 -92444298 + L1PA6 LINE L1 11 6145 -9 4654 146 27 38 chr9 25418319 25419676 -92442951 + L1MA1 LINE L1 5732 7068 -653 * 2998 108 11 4 chr9 25419776 25420228 -92442399 + L1MA1 LINE L1 7267 7721 0 3590 169 8 8 chr9 25420246 25420494 -92442133 - L1 LINE L1 -1286 4860 4613 2211 114 3 0 chr9 25420494 25420801 -92441826 - AluSp SINE Alu -5 308 1 3590 169 8 8 chr9 25420801 25421278 -92441349 - L1 LINE L1 -1532 4614 4135 394 169 0 0 chr9 25421279 25421350 -92441277 + MER3 DNA MER1_type 139 209 0 294 222 0 0 chr9 25421303 25421357 -92441270 - MER3 DNA MER1_type -115 94 41 * 21 89 0 0 chr9 25421847 25421903 -92440724 + AT_rich Low_complexity Low_complexity 1 56 0 396 0 0 0 chr9 25423342 25423386 -92439241 + (TA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 25423387 25423408 -92439219 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 25424706 25424733 -92437894 + (CA)n Simple_repeat Simple_repeat 1 27 0 878 176 90 5 chr9 25424892 25425080 -92437547 - MER3 DNA MER1_type 0 209 6 34 24 0 0 chr9 25425117 25425158 -92437469 + AT_rich Low_complexity Low_complexity 1 41 0 1516 185 3 14 chr9 25425398 25425716 -92436911 + AluJb SINE Alu 1 315 0 1640 105 31 0 chr9 25426979 25427236 -92435391 - L1MA1 LINE L1 0 6302 6038 246 353 13 51 chr9 25427860 25428016 -92434611 + L3 LINE CR1 636 785 -792 1385 208 47 9 chr9 25428257 25428574 -92434053 - MER45B DNA AcHobo 0 1040 712 1974 79 0 4 chr9 25428574 25428840 -92433787 + THE1-int LTR MaLR 1 265 -1315 712 270 123 19 chr9 25429245 25429604 -92433023 - L1ME4a LINE L1 -211 5910 5515 1247 181 41 0 chr9 25430005 25430226 -92432401 + AluJb SINE Alu 83 312 0 25 51 0 0 chr9 25430379 25430418 -92432209 + AT_rich Low_complexity Low_complexity 1 39 0 216 97 0 0 chr9 25431191 25431222 -92431405 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr9 25432217 25432240 -92430387 + AT_rich Low_complexity Low_complexity 1 23 0 6751 258 83 36 chr9 25433543 25435798 -92426829 - L1ME1 LINE L1 -8 6953 4804 2152 68 6 71 chr9 25435798 25436120 -92426507 + AluY SINE Alu 1 301 -10 6751 258 83 36 chr9 25436120 25436194 -92426433 - L1ME1 LINE L1 -2157 4804 4735 1947 138 7 3 chr9 25436194 25436499 -92426128 + AluSx SINE Alu 7 312 0 6751 258 83 36 chr9 25436499 25437478 -92425149 - L1ME1 LINE L1 -2226 4735 3803 8830 79 3 0 chr9 25437478 25439438 -92423189 - L1PA6 LINE L1 0 6154 4183 6751 258 83 36 chr9 25439438 25440755 -92421872 - L1ME1 LINE L1 -3158 3803 2548 310 0 67 0 chr9 25440755 25440800 -92421827 + (TATAA)n Simple_repeat Simple_repeat 3 50 0 6751 258 83 36 chr9 25440800 25441327 -92421300 - L1ME1 LINE L1 -4413 2548 2047 2219 108 10 0 chr9 25441327 25441633 -92420994 - AluSp SINE Alu -4 309 1 6751 258 83 36 chr9 25441633 25442142 -92420485 - L1ME1 LINE L1 -4914 2047 821 1789 251 19 2 chr9 25442165 25442591 -92420036 - MLT1C LTR MaLR -1 466 34 1514 174 79 82 chr9 25442604 25442995 -92419632 - MLT1B LTR MaLR 0 390 1 409 303 64 21 chr9 25443703 25443937 -92418690 - L1ME LINE L1 -302 5819 5576 195 402 18 9 chr9 25444126 25444238 -92418389 + MIR3 SINE MIR 47 159 -49 857 339 38 13 chr9 25445613 25445985 -92416642 + LTR16A LTR ERVL 20 400 -50 759 293 31 27 chr9 25446021 25446280 -92416347 - MIR SINE MIR 0 262 3 24 32 0 0 chr9 25446438 25446469 -92416158 + AT_rich Low_complexity Low_complexity 1 31 0 31 26 0 0 chr9 25446939 25446977 -92415650 + AT_rich Low_complexity Low_complexity 1 38 0 234 315 71 39 chr9 25446982 25447109 -92415518 - MIR SINE MIR -40 222 92 2258 128 27 3 chr9 25447140 25447506 -92415121 + THE1C LTR MaLR 1 375 0 359 283 196 38 chr9 25448053 25448237 -92414390 + MIR SINE MIR 2 214 -48 503 359 21 24 chr9 25448328 25448657 -92413970 - L2 LINE L2 -703 2611 2284 23 0 0 0 chr9 25448800 25448823 -92413804 + AT_rich Low_complexity Low_complexity 1 23 0 383 297 34 0 chr9 25448949 25449067 -92413560 - L2 LINE L2 -5 3308 3187 1326 267 84 41 chr9 25449076 25449762 -92412865 + HAL1b LINE L1 267 982 -366 1911 211 44 12 chr9 25499767 25500323 -92362304 + L1M2c LINE L1 1152 1698 -4513 * 2540 143 27 40 chr9 25500310 25500367 -92362260 - L1MA7 LINE L1 -457 5834 5778 207 0 0 0 chr9 25500367 25500390 -92362237 + (TA)n Simple_repeat Simple_repeat 1 23 0 2540 143 27 40 chr9 25500390 25500813 -92361814 - L1MA7 LINE L1 -513 5778 5360 1089 175 21 3 chr9 25500816 25501149 -92361478 + L1MA7 LINE L1 5836 6280 -11 2944 253 50 33 chr9 25501174 25502835 -92359792 + L1M4c LINE L1 1459 3160 -3222 56 29 0 0 chr9 25502837 25502907 -92359720 + AT_rich Low_complexity Low_complexity 1 70 0 403 341 89 11 chr9 25502961 25503140 -92359487 + MIR SINE MIR 13 205 -57 249 163 0 0 chr9 25503365 25503414 -92359213 + GA-rich Low_complexity Low_complexity 2 50 0 196 313 133 8 chr9 25503587 25503715 -92358912 + L2 LINE L2 2916 3059 -254 2235 112 3 0 chr9 25503758 25504063 -92358564 - AluSx SINE Alu -6 306 1 711 133 13 164 chr9 25504079 25504109 -92358518 + L1MA9 LINE L1 6121 6154 -158 297 0 0 0 chr9 25504109 25504142 -92358485 + (CA)n Simple_repeat Simple_repeat 2 34 0 711 133 13 164 chr9 25504142 25504337 -92358290 + L1MA9 LINE L1 6154 6312 0 17104 31 2 1 chr9 25505108 25507939 -92354688 - L1PA3 LINE L1 -1 6154 3321 456 289 173 6 chr9 25509962 25510118 -92352509 - MIR SINE MIR -75 187 6 2006 256 81 39 chr9 25510694 25511420 -92351207 - L1ME3A LINE L1 -13 6157 5358 2078 142 0 0 chr9 25511420 25511716 -92350911 - AluSx SINE Alu -16 296 1 2006 256 81 39 chr9 25511716 25512095 -92350532 - L1ME3A LINE L1 -812 5358 4997 192 40 0 0 chr9 25513533 25513558 -92349069 + (CA)n Simple_repeat Simple_repeat 2 26 0 219 114 0 0 chr9 25514020 25514055 -92348572 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 1371 77 0 57 chr9 25514055 25514148 -92348479 - L1PA8 LINE L1 -24 6148 6051 2406 98 0 0 chr9 25514148 25514455 -92348172 - AluSq SINE Alu -6 307 1 1371 77 0 57 chr9 25514455 25514570 -92348057 - L1PA8 LINE L1 -121 6051 5952 27 0 0 0 chr9 25514840 25514867 -92347760 + AT_rich Low_complexity Low_complexity 1 27 0 342 338 74 17 chr9 25515022 25515253 -92347374 + L1M4 LINE L1 4522 4765 -1381 206 286 57 29 chr9 25515529 25515599 -92347028 + L2 LINE L2 3242 3313 0 1467 186 259 5 chr9 25515757 25515800 -92346827 - MLT2B1 LTR ERVL 0 520 489 303 28 0 0 chr9 25515800 25515836 -92346791 + (TG)n Simple_repeat Simple_repeat 1 36 0 1467 186 259 5 chr9 25515836 25516205 -92346422 - MLT2B1 LTR ERVL -31 489 3 204 318 23 34 chr9 25516666 25516754 -92345873 - L2 LINE L2 0 3313 3227 4139 107 40 54 chr9 25516866 25517032 -92345595 - LTR8 LTR ERV1 0 691 524 207 0 0 0 chr9 25517032 25517055 -92345572 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1950 112 11 4 chr9 25517060 25517338 -92345289 - AluSx SINE Alu -30 282 3 4139 107 40 54 chr9 25517338 25517866 -92344761 - LTR8 LTR ERV1 -171 520 1 458 332 43 5 chr9 25517908 25518095 -92344532 - L2 LINE L2 -516 2798 2605 292 244 103 0 chr9 25518125 25518203 -92344424 - MER69A DNA AcHobo -31 146 61 252 333 84 40 chr9 25518259 25518532 -92344095 - L2 LINE L2 -721 2593 2309 1677 190 25 19 chr9 25520727 25520863 -92341764 + MLT1A1 LTR MaLR 1 135 -230 6767 49 1 0 chr9 25520863 25521705 -92340922 + L1PA4 LINE L1 5310 6152 -3 1677 190 25 19 chr9 25521705 25521931 -92340696 + MLT1A1 LTR MaLR 135 365 0 428 209 163 8 chr9 25522083 25522212 -92340415 - L1ME LINE L1 -437 5684 5536 585 302 106 39 chr9 25522330 25522737 -92339890 - L1ME LINE L1 -748 5398 4965 1037 287 98 25 chr9 25522737 25523134 -92339493 + MLT1J2 LTR MaLR 1 426 -24 223 338 133 13 chr9 25523402 25523553 -92339074 + L2 LINE L2 2697 2865 -449 594 309 30 0 chr9 25524149 25524350 -92338277 - LTR33 LTR ERVL 0 521 315 292 333 44 18 chr9 25524419 25524533 -92338094 - LTR33A LTR ERVL -334 189 73 239 192 19 0 chr9 25525663 25525715 -92336912 + (CAT)n Simple_repeat Simple_repeat 1 53 0 320 276 82 0 chr9 25525735 25525833 -92336794 - MIR SINE MIR -26 236 131 200 352 64 32 chr9 25525868 25525993 -92336634 + L2 LINE L2 3141 3269 -3 2724 217 22 11 chr9 25527409 25527424 -92335203 - L1P LINE L1 -2451 3695 3682 285 29 0 0 chr9 25527424 25527458 -92335169 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2724 217 22 11 chr9 25527458 25528153 -92334474 - L1P LINE L1 -2464 3682 2977 * 5863 147 12 2 chr9 25528152 25529224 -92333403 + L1PA15 LINE L1 5072 6164 -1 216 0 0 0 chr9 25529892 25529916 -92332711 + (T)n Simple_repeat Simple_repeat 1 24 0 2254 119 3 0 chr9 25530406 25530716 -92331911 + AluSq SINE Alu 1 311 -2 347 227 91 11 chr9 25530721 25530809 -92331818 + L2 LINE L2 3169 3263 -9 210 91 0 0 chr9 25530812 25530845 -92331782 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 353 251 33 49 chr9 25532405 25532588 -92330039 + L1ME4a LINE L1 5727 5906 -215 249 33 0 0 chr9 25532928 25532958 -92329669 + (TG)n Simple_repeat Simple_repeat 2 31 0 359 344 44 15 chr9 25533423 25533630 -92328997 + MIR SINE MIR 45 256 -6 647 119 50 0 chr9 25533747 25533848 -92328779 + MLT1B LTR MaLR 1 106 -284 640 170 9 0 chr9 25533852 25533964 -92328663 + AluSq/x SINE Alu 1 113 -200 4123 115 95 101 chr9 25533964 25535377 -92327250 + pTR5 LTR ERV1 66 2438 0 577 239 90 0 chr9 25535402 25535575 -92327052 + FRAM SINE Alu 1 50 0 1166 198 48 58 chr9 25535575 25535868 -92326759 + MLT1B LTR MaLR 101 390 0 225 353 57 0 chr9 25536807 25536929 -92325698 + MIR3 SINE MIR 75 203 -5 250 329 37 0 chr9 25537090 25537172 -92325455 + L2 LINE L2 3228 3312 -1 363 224 216 0 chr9 25537488 25537604 -92325023 + L2 LINE L2 3173 3313 0 200 242 53 42 chr9 25538293 25538388 -92324239 + L2 LINE L2 2170 2265 -1049 252 258 0 0 chr9 25540147 25540209 -92322418 + (CAATT)n Simple_repeat Simple_repeat 1 62 0 287 352 22 0 chr9 25540209 25540300 -92322327 - L2 LINE L2 -8 3264 3172 2623 123 6 105 chr9 25540440 25540937 -92321690 - LTR32 LTR ERVL -9 462 15 522 234 48 110 chr9 25541926 25541990 -92320637 + MIR SINE MIR 49 115 -147 2427 77 3 0 chr9 25541990 25542300 -92320327 + AluY SINE Alu 1 311 0 522 234 48 110 chr9 25542300 25542462 -92320165 + MIR SINE MIR 115 261 -1 312 196 144 21 chr9 25543200 25543297 -92319330 - MER103 DNA DNA -4 162 54 1632 195 13 16 chr9 25543311 25543614 -92319013 - AluJb SINE Alu -10 302 1 21 36 0 0 chr9 25546027 25546055 -92316572 + AT_rich Low_complexity Low_complexity 1 28 0 51 42 0 0 chr9 25547102 25547174 -92315453 + AT_rich Low_complexity Low_complexity 1 72 0 7165 227 67 12 chr9 25547894 25549713 -92312914 - L1MC/D LINE L1 -743 5403 3457 1963 132 0 21 chr9 25549713 25550095 -92312532 - AluSq SINE Alu 0 376 1 7165 227 67 12 chr9 25550095 25550587 -92312040 - L1MC/D LINE L1 -2689 3457 2993 1274 197 7 62 chr9 25550596 25550900 -92311727 + AluJo SINE Alu 11 297 -15 1249 258 15 36 chr9 25550902 25551371 -92311256 - L1MC/D LINE L1 -3144 3002 2544 207 359 63 6 chr9 25551390 25551549 -92311078 + L3 LINE CR1 685 852 -725 23 33 0 0 chr9 25553263 25553293 -92309334 + AT_rich Low_complexity Low_complexity 1 30 0 344 292 62 45 chr9 25554835 25555078 -92307549 + L1MEd LINE L1 830 1076 -5043 781 136 54 27 chr9 25555094 25555241 -92307386 - MLT1B LTR MaLR -239 151 1 272 355 13 13 chr9 25555257 25555412 -92307215 + L1ME LINE L1 5491 5645 -521 1651 172 7 24 chr9 25555596 25555887 -92306740 + AluJo SINE Alu 6 291 -21 1492 204 92 67 chr9 25556036 25556527 -92306100 + MLT1D LTR MaLR 1 503 -2 21 0 0 0 chr9 25556860 25556881 -92305746 + AT_rich Low_complexity Low_complexity 1 21 0 397 202 17 34 chr9 25557796 25557974 -92304653 + CT-rich Low_complexity Low_complexity 4 178 0 312 27 0 0 chr9 25558819 25558856 -92303771 + (CA)n Simple_repeat Simple_repeat 1 37 0 1680 172 4 4 chr9 25558862 25559135 -92303492 - AluJo SINE Alu -31 281 9 35 54 0 0 chr9 25559617 25559673 -92302954 + AT_rich Low_complexity Low_complexity 1 56 0 1525 275 96 29 chr9 25559678 25560394 -92302233 - L1ME3 LINE L1 -2 6160 5397 1688 134 48 101 chr9 25560404 25560800 -92301827 - THE1C LTR MaLR 0 375 1 216 0 0 0 chr9 25561024 25561048 -92301579 + (TA)n Simple_repeat Simple_repeat 2 25 0 1911 143 4 0 chr9 25561048 25561327 -92301300 - AluSx SINE Alu -27 285 6 1825 290 82 17 chr9 25561342 25562789 -92299838 - L1ME3 LINE L1 -1070 5076 3494 2027 229 80 63 chr9 25562795 25563569 -92299058 - L1ME1 LINE L1 -5 6230 5444 2734 249 86 39 chr9 25563646 25564777 -92297850 - L1ME1 LINE L1 -5136 1260 77 1911 137 32 48 chr9 25564778 25565157 -92297470 + THE1C LTR MaLR 1 373 -2 28 29 0 0 chr9 25565219 25565254 -92297373 + AT_rich Low_complexity Low_complexity 1 35 0 9074 169 40 24 chr9 25565254 25567900 -92294727 - L1MA8 LINE L1 -6 6285 3563 2097 127 0 0 chr9 25567900 25568183 -92294444 - AluSx SINE Alu -27 285 3 9074 169 40 24 chr9 25568183 25568906 -92293721 - L1MA8 LINE L1 -2728 3563 2853 274 235 83 30 chr9 25568916 25569048 -92293579 - L1ME3 LINE L1 -2669 3477 3339 1844 199 25 0 chr9 25569358 25569714 -92292913 - MLT1A1 LTR MaLR 0 365 1 191 365 96 10 chr9 25569826 25569930 -92292697 + L2 LINE L2 3198 3310 -3 390 21 0 0 chr9 25570961 25571008 -92291619 + (TG)n Simple_repeat Simple_repeat 1 47 0 244 321 37 9 chr9 25571441 25571550 -92291077 - MIR3 SINE MIR -13 195 84 15173 32 0 0 chr9 25571551 25573374 -92289253 - L1P LINE L1 -892 5254 3432 4500 32 2 0 chr9 25573374 25573946 -92288681 + L1PA3 LINE L1 5617 6192 0 294 253 25 13 chr9 25574202 25574281 -92288346 - L2 LINE L2 -4 3309 3230 389 309 93 34 chr9 25574301 25574505 -92288122 + MIR SINE MIR 40 255 -7 11851 174 20 14 chr9 25575110 25576115 -92286512 - L1PA13 LINE L1 -1 6162 5165 2197 116 0 0 chr9 25576115 25576409 -92286218 - AluSc SINE Alu -15 294 1 11851 174 20 14 chr9 25576409 25578555 -92284072 - L1PA13 LINE L1 -998 5165 2986 2074 152 33 25 chr9 25578556 25578917 -92283710 - THE1B LTR MaLR 0 364 1 9887 115 10 31 chr9 25578917 25580406 -92282221 - THE1B-int LTR MaLR 0 1580 123 317 146 0 0 chr9 25580406 25580454 -92282173 - THE1C LTR MaLR -327 48 1 640 158 0 0 chr9 25580454 25580568 -92282059 - L1PA13 LINE L1 -3157 2989 2876 357 288 92 32 chr9 25580989 25581454 -92281173 - L1M4 LINE L1 -751 5395 4903 279 327 54 25 chr9 25582351 25582629 -92279998 + L1ME4a LINE L1 5607 5892 -229 237 179 73 98 chr9 25582669 25582792 -92279835 + L1ME4a LINE L1 5991 6110 -11 816 296 28 33 chr9 25582862 25583224 -92279403 - L1ME3 LINE L1 0 6162 5803 493 160 4 153 chr9 25583248 25583406 -92279221 - L1ME3 LINE L1 -587 5579 5457 419 298 60 22 chr9 25583501 25583820 -92278807 - L1ME LINE L1 -5064 1006 676 330 285 83 43 chr9 25584516 25584867 -92277760 - L1MEc LINE L1 -3825 2390 2066 1857 203 46 28 chr9 25585019 25585478 -92277149 - MLT1C LTR MaLR 0 467 1 248 274 80 28 chr9 25585640 25585852 -92276775 - L1MEc LINE L1 -4606 1609 1387 7098 47 9 1 chr9 25585859 25587038 -92275589 + L1PA5 LINE L1 4962 6147 -7 204 40 0 0 chr9 25587119 25587144 -92275483 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1122 258 59 94 chr9 25587286 25587762 -92274865 + LTR40a LTR ERVL 2 517 -2 2161 115 3 0 chr9 25587778 25588074 -92274553 + AluSx SINE Alu 1 297 -15 823 215 84 34 chr9 25588195 25588553 -92274074 - L1MEc LINE L1 -5063 1333 958 1279 194 169 3 chr9 25588557 25588871 -92273756 + MER47A DNA MER2_type 1 366 0 967 283 36 26 chr9 25588892 25589313 -92273314 - L1MEc LINE L1 -5462 934 510 4531 186 37 14 chr9 25589857 25590814 -92271813 - L1MC1 LINE L1 -5 6328 5350 950 142 59 50 chr9 25590826 25591045 -92271582 - L1MCa LINE L1 -4432 1994 1774 546 192 15 39 chr9 25591068 25591198 -92271429 - L1MB3 LINE L1 -9 6174 6048 1121 239 152 16 chr9 25591480 25591802 -92270825 - MSTD LTR MaLR -30 366 1 199 306 143 34 chr9 25593543 25593752 -92268875 - L2 LINE L2 -166 3147 2916 265 331 118 24 chr9 25594034 25594203 -92268424 - MIR SINE MIR -50 212 28 4901 193 23 36 chr9 25594441 25596358 -92266269 - L1MA10 LINE L1 -41 6529 4643 21 36 0 0 chr9 25596370 25596398 -92266229 + AT_rich Low_complexity Low_complexity 1 28 0 6085 149 28 21 chr9 25596398 25596978 -92265649 - L1MA3 LINE L1 0 7724 7149 2422 97 43 6 chr9 25596978 25597328 -92265299 + THE1B LTR MaLR 1 363 -1 6085 149 28 21 chr9 25597328 25597818 -92264809 - L1MA3 LINE L1 -575 7149 6654 2299 93 3 10 chr9 25597818 25598131 -92264496 - AluY SINE Alu 0 311 1 6085 149 28 21 chr9 25598131 25598451 -92264176 - L1MA3 LINE L1 -1070 6654 6338 807 140 20 27 chr9 25598480 25598630 -92263997 - L1MA3 LINE L1 -4160 3405 3257 3939 183 25 18 chr9 25598631 25599379 -92263248 - L1MA10 LINE L1 -1752 4630 3874 3061 86 58 0 chr9 25599379 25599807 -92262820 - MLT2A2 LTR ERVL 0 453 1 3939 183 25 18 chr9 25599807 25599909 -92262718 - L1MA10 LINE L1 -2508 3874 3774 1124 268 56 24 chr9 25599908 25600599 -92262028 - L1MA10 LINE L1 -3613 2769 2044 * 2106 301 89 30 chr9 25600694 25601319 -92261308 - L1MA10 LINE L1 -5210 1103 516 2204 145 11 16 chr9 25601319 25601685 -92260942 + THE1B LTR MaLR 1 364 0 11168 98 13 5 chr9 25601685 25603247 -92259380 + THE1B-int LTR MaLR 1 1576 -4 1989 166 28 22 chr9 25603251 25603613 -92259014 + THE1B LTR MaLR 1 364 0 2106 301 89 30 chr9 25603613 25603860 -92258767 - L1MA10 LINE L1 -5799 514 173 7681 191 23 40 chr9 25603860 25605593 -92257034 - L1MCa LINE L1 -4284 2143 5 1331 303 106 19 chr9 25605596 25606219 -92256408 - HAL1 LINE L1 -1828 679 3 299 261 0 0 chr9 25606504 25606573 -92256054 - L2 LINE L2 -1 3312 3244 29 0 0 0 chr9 25607150 25607179 -92255448 + AT_rich Low_complexity Low_complexity 1 29 0 435 256 31 3 chr9 25607277 25607386 -92255241 - MLT1J2 LTR MaLR -280 199 70 24 53 0 0 chr9 25607677 25607715 -92254912 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr9 25608310 25608331 -92254296 + AT_rich Low_complexity Low_complexity 1 21 0 261 314 95 95 chr9 25608797 25609039 -92253588 + MLT1K LTR MaLR 118 359 -229 1165 75 6 0 chr9 25609070 25609231 -92253396 + L1PB2 LINE L1 5987 6148 -3 195 235 0 0 chr9 25609465 25609563 -92253064 + (TA)n Simple_repeat Simple_repeat 1 98 0 197 349 16 0 chr9 25609601 25609664 -92252963 + L2 LINE L2 3174 3237 -35 4361 201 25 46 chr9 25609669 25610589 -92252038 + MER54A LTR ERVL 1 901 0 659 302 72 4 chr9 25610808 25611049 -92251578 + MIR SINE MIR 6 262 0 350 269 163 0 chr9 25611840 25611981 -92250646 + MIR SINE MIR 79 242 -20 276 154 0 0 chr9 25612645 25612697 -92249930 + T-rich Low_complexity Low_complexity 1 52 0 5613 22 3 2 chr9 25612745 25613587 -92249040 - L1PA4 LINE L1 -598 5557 4715 4687 36 5 12 chr9 25613587 25614154 -92248473 + L1PA4 LINE L1 5571 6153 -2 192 337 0 47 chr9 25614302 25614388 -92248239 + MIR SINE MIR 30 111 -97 973 180 6 11 chr9 25614408 25614586 -92248041 + MER5B DNA MER1_type 1 177 -1 253 327 56 0 chr9 25616563 25616670 -92245957 + L2 LINE L2 3147 3259 -13 646 189 104 62 chr9 25617230 25617590 -92245037 + MLT1G LTR MaLR 109 590 0 537 242 52 7 chr9 25618006 25618159 -92244468 - MER103 DNA DNA 0 166 7 21 36 0 0 chr9 25618608 25618636 -92243991 + AT_rich Low_complexity Low_complexity 1 28 0 268 195 381 0 chr9 25619451 25619569 -92243058 + MER103 DNA DNA 2 164 -2 192 301 135 19 chr9 25619812 25619940 -92242687 - MIR SINE MIR -67 141 29 402 80 0 40 chr9 25620446 25620521 -92242106 + (TTCTC)n Simple_repeat Simple_repeat 4 75 0 287 286 26 0 chr9 25621467 25621544 -92241083 + L2 LINE L2 3232 3310 -3 210 339 45 27 chr9 25621567 25621679 -92240948 - MIR SINE MIR -58 150 37 2333 66 0 3 chr9 25622186 25622488 -92240139 - AluY SINE Alu -10 301 1 25 0 0 0 chr9 25622676 25622701 -92239926 + AT_rich Low_complexity Low_complexity 1 25 0 42037 39 26 2 chr9 25623688 25629730 -92232897 - L1PA3 LINE L1 0 6155 7 180 77 0 0 chr9 25630344 25630370 -92232257 + (TGAA)n Simple_repeat Simple_repeat 4 29 0 1442 251 94 7 chr9 25630907 25631365 -92231262 + L2 LINE L2 2077 2574 -740 613 191 53 15 chr9 25631365 25631496 -92231131 - MER63 DNA MER1_type -60 776 15 662 246 56 6 chr9 25632019 25632198 -92230429 - MER5A DNA MER1_type 0 189 2 584 281 7 14 chr9 25632733 25632872 -92229755 + MER5A DNA MER1_type 2 139 -50 23 33 0 0 chr9 25633152 25633182 -92229445 + AT_rich Low_complexity Low_complexity 1 30 0 436 294 138 25 chr9 25633567 25633657 -92228970 - MER5B DNA MER1_type 0 178 100 1816 176 48 28 chr9 25633657 25634015 -92228612 - MLT1A1 LTR MaLR 0 365 1 436 294 138 25 chr9 25634015 25634084 -92228543 - MER5B DNA MER1_type -78 100 1 23 0 0 0 chr9 25634203 25634226 -92228401 + AT_rich Low_complexity Low_complexity 1 23 0 196 289 0 19 chr9 25635017 25635069 -92227558 - MIR SINE MIR -134 74 24 2744 87 0 0 chr9 25635780 25636149 -92226478 - L1PA11 LINE L1 -304 5864 5496 1759 131 39 26 chr9 25636151 25636456 -92226171 + L1PA11 LINE L1 5864 6172 -2 183 129 0 0 chr9 25636840 25636871 -92225756 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 268 353 33 20 chr9 25637209 25637359 -92225268 - MIR3 SINE MIR -6 202 51 7464 94 5 20 chr9 25637923 25639007 -92223620 - MER11C LTR ERVK -4 1067 1 438 198 30 10 chr9 25639019 25639120 -92223507 - MER5A DNA MER1_type -77 112 10 599 279 65 5 chr9 25640549 25640764 -92221863 - L2 LINE L2 -259 3054 2827 627 297 115 63 chr9 25640799 25641343 -92221284 + L2 LINE L2 2714 3298 -15 190 184 29 39 chr9 25641372 25641475 -92221152 + CT-rich Low_complexity Low_complexity 4 105 0 27 0 0 0 chr9 25643615 25643642 -92218985 + AT_rich Low_complexity Low_complexity 1 27 0 388 282 125 68 chr9 25644209 25644923 -92217704 - L2 LINE L2 0 3313 2458 231 240 27 13 chr9 25645296 25645371 -92217256 - MIR SINE MIR -4 258 183 997 297 101 23 chr9 25645720 25646243 -92216384 - L2 LINE L2 0 3313 2753 1699 146 114 7 chr9 25646578 25646859 -92215768 + AluSx SINE Alu 1 311 -1 1932 187 25 42 chr9 25647121 25647596 -92215031 + MLT1C LTR MaLR 1 467 0 195 323 75 21 chr9 25648104 25648197 -92214430 - MIR SINE MIR -66 196 99 185 206 96 68 chr9 25648257 25648330 -92214297 - L2 LINE L2 -300 2972 2898 195 114 0 0 chr9 25648461 25648496 -92214131 + (TATG)n Simple_repeat Simple_repeat 4 38 0 225 0 0 0 chr9 25648719 25648744 -92213883 + (TG)n Simple_repeat Simple_repeat 2 26 0 1934 146 27 27 chr9 25649040 25649411 -92213216 - THE1C LTR MaLR -2 373 3 29 47 0 0 chr9 25649579 25649622 -92213005 + AT_rich Low_complexity Low_complexity 1 43 0 849 123 27 0 chr9 25649622 25649768 -92212859 - L1MA9 LINE L1 0 6312 6163 1056 103 35 0 chr9 25649768 25649942 -92212685 - L1MA9 LINE L1 -829 5483 5304 * 1532 236 3 5 chr9 25649940 25650309 -92212318 - L1 LINE L1 -1962 4420 4053 478 228 0 0 chr9 25650308 25650409 -92212218 + L1 LINE L1 3713 3813 -2333 * 2930 270 69 17 chr9 25650399 25651355 -92211272 - L1 LINE L1 -3630 2752 1896 1386 276 3 19 chr9 25651355 25651725 -92210902 - MLT1A1 LTR MaLR -1 364 1 2930 270 69 17 chr9 25651725 25652701 -92209926 - L1 LINE L1 -4486 1896 972 647 298 63 44 chr9 25653072 25653495 -92209132 - L1 LINE L1 -5857 456 33 2324 176 69 0 chr9 25653499 25653936 -92208691 - L1MC3 LINE L1 -11 7774 7308 234 0 0 0 chr9 25654365 25654391 -92208236 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 1994 114 17 3 chr9 25655176 25655465 -92207162 - AluSx SINE Alu -19 293 1 853 180 12 123 chr9 25655620 25655864 -92206763 + MER20 DNA MER1_type 1 217 -2 230 342 52 32 chr9 25657869 25658024 -92204603 - L2 LINE L2 -470 2844 2687 275 360 40 16 chr9 25658502 25658627 -92204000 + L2 LINE L2 3139 3266 -6 201 303 0 101 chr9 25660241 25660330 -92202297 + MIR SINE MIR 16 95 -113 189 0 0 0 chr9 25660719 25660740 -92201887 + (TA)n Simple_repeat Simple_repeat 1 21 0 268 107 71 0 chr9 25661758 25661842 -92200785 + (TCTA)n Simple_repeat Simple_repeat 1 90 0 21 36 0 0 chr9 25661902 25661930 -92200697 + AT_rich Low_complexity Low_complexity 1 28 0 2509 31 7 3 chr9 25662229 25662521 -92200106 - AluY SINE Alu -4 307 15 440 344 60 0 chr9 25663125 25663343 -92199284 + L2 LINE L2 2141 2371 -943 315 0 0 0 chr9 25665138 25665173 -92197454 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr9 25665287 25665315 -92197312 + AT_rich Low_complexity Low_complexity 1 28 0 396 0 94 0 chr9 25665360 25665413 -92197214 - L1PA3 LINE L1 -1 6154 6097 2661 28 3 0 chr9 25665413 25665730 -92196897 + L1PA4 LINE L1 5762 6079 -76 2405 67 0 7 chr9 25666050 25666349 -92196278 + AluY SINE Alu 1 297 -14 273 265 15 0 chr9 25666458 25666526 -92196101 + MIR SINE MIR 85 153 -109 812 164 8 0 chr9 25666526 25666660 -92195967 + MER47A DNA MER2_type 4 138 -228 486 130 0 39 chr9 25666661 25666722 -92195905 - Tigger7 DNA MER2_type -27 2464 2405 2233 122 0 0 chr9 25666722 25667026 -92195601 - AluSx SINE Alu -8 304 1 486 130 0 39 chr9 25667026 25667041 -92195586 - Tigger7 DNA MER2_type -86 2405 2391 1331 228 15 0 chr9 25667056 25667315 -92195312 - Tigger7 DNA MER2_type -2223 264 2 1354 179 8 0 chr9 25667316 25667551 -92195076 + MER47A DNA MER2_type 129 365 -1 262 309 0 12 chr9 25667552 25667636 -92194991 + MIR SINE MIR 153 235 -27 242 250 0 0 chr9 25667648 25667700 -92194927 + MIR SINE MIR 210 261 -1 1057 115 0 0 chr9 25667921 25668077 -92194550 + L1MA1 LINE L1 6143 6298 -4 216 172 35 35 chr9 25668999 25669086 -92193541 + (TA)n Simple_repeat Simple_repeat 1 87 0 495 33 0 0 chr9 25669096 25669157 -92193470 + (CA)n Simple_repeat Simple_repeat 2 62 0 1906 96 7 38 chr9 25670075 25670366 -92192261 + AluSx SINE Alu 1 282 -30 315 0 0 0 chr9 25670371 25670406 -92192221 + (TAA)n Simple_repeat Simple_repeat 2 36 0 224 150 125 0 chr9 25670521 25670561 -92192066 - MIR SINE MIR -69 139 95 284 306 105 7 chr9 25671639 25671782 -92190845 - L1ME3A LINE L1 -9 6230 6073 464 279 220 40 chr9 25671848 25672221 -92190406 + LTR16A1 LTR ERVL 1 440 -17 548 251 67 124 chr9 25672304 25672649 -92189978 - L1ME3A LINE L1 -216 6023 5727 661 239 50 6 chr9 25672649 25672829 -92189798 - MER5A DNA MER1_type 0 189 2 548 251 67 124 chr9 25672829 25673096 -92189531 - L1ME3A LINE L1 -512 5727 5446 324 321 156 18 chr9 25673182 25673406 -92189221 - L1ME3A LINE L1 -1144 5071 4817 305 324 71 18 chr9 25673440 25673632 -92188995 - L1ME3A LINE L1 -3707 2508 2301 997 261 13 8 chr9 25673632 25673870 -92188757 - MER8 DNA MER2_type 0 239 1 305 324 71 18 chr9 25673870 25673902 -92188725 - L1ME3A LINE L1 -3914 2301 2272 256 275 0 0 chr9 25673916 25673996 -92188631 - L1ME3A LINE L1 -4098 2298 2219 218 224 0 17 chr9 25674083 25674141 -92188486 + (CATA)n Simple_repeat Simple_repeat 3 59 0 706 243 40 52 chr9 25674799 25675050 -92187577 - LTR33 LTR ERVL -236 285 38 952 246 33 0 chr9 25675444 25675655 -92186972 + MER58A DNA MER1_type 1 218 -6 312 342 74 21 chr9 25676059 25676249 -92186378 - MIR SINE MIR -10 252 53 636 206 160 29 chr9 25677815 25678053 -92184574 - L1ME3A LINE L1 -172 6067 5799 4212 45 6 0 chr9 25678694 25679232 -92183395 - L1PA5 LINE L1 -3303 2843 2303 20103 49 7 6 chr9 25679232 25682554 -92180073 + L1PA5 LINE L1 2812 6146 -8 844 261 108 30 chr9 25683466 25683899 -92178728 - L1ME3A LINE L1 -418 5813 5357 515 278 70 29 chr9 25683933 25684206 -92178421 - L1ME3A LINE L1 -844 5371 5088 356 254 28 108 chr9 25684212 25684499 -92178128 - L1ME3A LINE L1 -1220 4995 4732 350 303 18 46 chr9 25684496 25684714 -92177913 - L1ME3A LINE L1 -4604 1792 1581 * 827 222 5 0 chr9 25684863 25685066 -92177561 - L1MC3 LINE L1 -1 7784 7581 349 307 168 3 chr9 25685066 25685369 -92177258 - L1ME3A LINE L1 -5157 1048 696 921 120 0 0 chr9 25685458 25685600 -92177027 + (TCCCC)n Simple_repeat Simple_repeat 2 143 0 1721 194 7 0 chr9 25685616 25685925 -92176702 - AluJb SINE Alu -1 311 1 244 301 64 68 chr9 25686105 25686341 -92176286 - L1ME3A LINE L1 -5951 445 211 1974 176 14 3 chr9 25687117 25687475 -92175152 - MER47A DNA MER2_type -3 363 2 357 102 0 0 chr9 25687485 25687544 -92175083 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1206 102 0 0 chr9 25687581 25687757 -92174870 + (TA)n Simple_repeat Simple_repeat 1 176 0 307 299 35 0 chr9 25687774 25687861 -92174766 - L1MC4 LINE L1 -1339 6703 6614 21 57 0 0 chr9 25687884 25687919 -92174708 + AT_rich Low_complexity Low_complexity 1 35 0 546 269 14 7 chr9 25688054 25688199 -92174428 - L2 LINE L2 -1 3312 3167 2775 201 81 32 chr9 25688982 25689114 -92173513 - LTR48 LTR ERV1 0 787 663 2660 110 0 3 chr9 25689114 25689479 -92173148 - THE1B LTR MaLR 0 364 1 9817 118 41 28 chr9 25689481 25691039 -92171588 - THE1B-int LTR MaLR -2 1578 1 2698 113 0 0 chr9 25691039 25691403 -92171224 - THE1B LTR MaLR 0 364 1 2775 201 81 32 chr9 25691403 25692016 -92170611 - LTR48 LTR ERV1 -123 664 1 275 358 42 17 chr9 25693302 25693422 -92169205 - MIR SINE MIR -120 142 20 818 181 41 13 chr9 25695574 25695793 -92166834 - L1MC3 LINE L1 0 7769 6114 1416 189 102 0 chr9 25695794 25696069 -92166558 - AluJo SINE Alu -7 305 3 339 44 0 0 chr9 25696668 25696713 -92165914 + (TG)n Simple_repeat Simple_repeat 2 46 0 333 289 77 0 chr9 25696730 25696834 -92165793 - L2 LINE L2 -3 3310 3199 236 203 54 27 chr9 25697857 25697931 -92164696 - L1MC4 LINE L1 -1353 6689 6614 441 302 36 7 chr9 25698475 25698614 -92164013 + MIR SINE MIR 8 150 -112 704 332 83 34 chr9 25698878 25699370 -92163257 - L2 LINE L2 -17 3296 2781 1235 340 103 12 chr9 25699441 25700199 -92162428 - L2 LINE L2 -1281 2033 1207 456 35 0 0 chr9 25700283 25700341 -92162286 + (CTG)n Simple_repeat Simple_repeat 2 59 0 1363 226 50 3 chr9 25700805 25701142 -92161485 - L1MB3 LINE L1 -8 6175 5823 11732 174 37 19 chr9 25701148 25702009 -92160618 - L1M4c LINE L1 -3884 2500 1656 207 0 0 0 chr9 25702009 25702032 -92160595 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11732 174 37 19 chr9 25702032 25703609 -92159018 - L1M4c LINE L1 -4728 1656 18 39 22 0 0 chr9 25704357 25704403 -92158224 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 25704584 25704605 -92158022 + AT_rich Low_complexity Low_complexity 1 21 0 233 213 0 0 chr9 25705000 25705047 -92157580 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 972 178 56 0 chr9 25705244 25705475 -92157152 + MER33 DNA MER1_type 48 291 -33 4442 188 29 59 chr9 25705482 25705893 -92156734 + L1MA10 LINE L1 4791 5213 -1121 1301 194 12 76 chr9 25705893 25706223 -92156404 + AluJo SINE Alu 1 309 -3 4442 188 29 59 chr9 25706223 25707246 -92155381 + L1MA10 LINE L1 5213 6163 -171 387 41 0 0 chr9 25707246 25707295 -92155332 + (CAT)n Simple_repeat Simple_repeat 3 51 0 4442 188 29 59 chr9 25707295 25707432 -92155195 + L1MA10 LINE L1 6163 6303 -31 256 157 78 0 chr9 25707466 25707517 -92155110 + MER33 DNA MER1_type 304 358 -5 33 43 0 0 chr9 25707609 25707656 -92154971 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 25707709 25707741 -92154886 + AT_rich Low_complexity Low_complexity 1 32 0 5745 94 67 2 chr9 25707757 25709077 -92153550 - L1PA10 LINE L1 -2 6166 4813 2106 134 0 3 chr9 25710582 25710888 -92151739 + AluSc SINE Alu 3 307 -2 1796 167 146 3 chr9 25710964 25711335 -92151292 - MSTA LTR MaLR 0 428 5 363 272 9 26 chr9 25711406 25711520 -92151107 - L1MC4 LINE L1 -980 7062 6951 353 344 65 45 chr9 25711998 25712245 -92150382 - L3b LINE CR1 -55 1528 1277 184 329 110 0 chr9 25712363 25712445 -92150182 - MIR SINE MIR -7 255 165 1532 229 169 18 chr9 25712506 25712943 -92149684 + MLT2B1 LTR ERVL 18 520 0 315 253 67 0 chr9 25712944 25713019 -92149608 - MIR SINE MIR -182 80 1 223 269 0 0 chr9 25713074 25713126 -92149501 - MIR SINE MIR -110 152 101 651 196 14 184 chr9 25713130 25713477 -92149150 - MER4C LTR ERV1 -37 428 141 2300 90 7 7 chr9 25713969 25714279 -92148348 + AluSg SINE Alu 1 310 0 21 36 0 0 chr9 25714294 25714322 -92148305 + AT_rich Low_complexity Low_complexity 1 28 0 820 54 36 0 chr9 25714322 25714433 -92148194 - L1PA3 LINE L1 0 6155 6041 691 286 156 53 chr9 25715314 25715908 -92146719 - L2 LINE L2 -3 3310 2588 1825 143 60 33 chr9 25715908 25716273 -92146354 - THE1C LTR MaLR 0 375 1 691 286 156 53 chr9 25716273 25716613 -92146014 - L2 LINE L2 -725 2588 2284 1195 245 110 0 chr9 25716646 25716956 -92145671 + MER2 DNA MER2_type 2 345 0 498 307 49 7 chr9 25717141 25717296 -92145331 - MIR SINE MIR -66 142 21 235 394 19 7 chr9 25717301 25717456 -92145171 - L2 LINE L2 -1150 2164 2008 583 238 106 12 chr9 25717681 25717841 -92144786 - MIR SINE MIR -72 190 16 475 292 80 48 chr9 25717857 25718062 -92144565 + L1ME LINE L1 5088 5285 -884 2316 101 3 0 chr9 25718062 25718359 -92144268 + AluSp SINE Alu 1 298 -15 475 292 80 48 chr9 25718359 25718748 -92143879 + L1ME LINE L1 5285 5707 -462 2270 152 70 10 chr9 25718748 25719150 -92143477 - MSTB LTR MaLR 0 426 1 8218 184 42 34 chr9 25719161 25720782 -92141845 - MSTB-int LTR MaLR -17 1634 1 1495 207 146 16 chr9 25720782 25720974 -92141653 - MSTB LTR MaLR 0 426 260 213 39 0 0 chr9 25720974 25721000 -92141627 + (GA)n Simple_repeat Simple_repeat 2 27 0 1495 207 146 16 chr9 25721000 25721184 -92141443 - MSTB LTR MaLR -166 260 1 29 0 0 0 chr9 25721189 25721218 -92141409 + AT_rich Low_complexity Low_complexity 1 29 0 302 237 0 13 chr9 25721222 25721308 -92141319 + L1ME LINE L1 5724 5808 -356 323 311 198 21 chr9 25721351 25721685 -92140942 - L2 LINE L2 -1609 1705 1313 211 232 125 0 chr9 25721961 25722017 -92140610 - L2 LINE L2 -1 3271 3209 206 234 149 0 chr9 25722117 25722211 -92140416 - L2 LINE L2 -147 3166 3059 904 272 56 91 chr9 25722215 25722386 -92140241 - L2 LINE L2 -1463 1851 1675 1827 199 91 25 chr9 25722386 25722825 -92139802 + MLT2B1 LTR ERVL 3 478 -42 180 0 0 0 chr9 25722825 25722845 -92139782 + (TC)n Simple_repeat Simple_repeat 1 20 0 1827 199 91 25 chr9 25722845 25722887 -92139740 + MLT2B1 LTR ERVL 478 516 -4 904 272 56 91 chr9 25722887 25723273 -92139354 - L2 LINE L2 -1639 1675 1314 315 0 0 0 chr9 25724382 25724417 -92138210 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 82 0 0 chr9 25724571 25724620 -92138007 + AT_rich Low_complexity Low_complexity 1 49 0 186 325 49 41 chr9 25725715 25725838 -92136789 + MIR SINE MIR 102 225 -37 208 258 0 45 chr9 25726450 25726516 -92136111 - MIR SINE MIR -42 220 158 397 313 17 34 chr9 25726616 25726795 -92135832 + MER117 DNA MER1_type 1 176 -21 248 247 55 27 chr9 25727890 25727963 -92134664 + L2 LINE L2 2213 2287 -1027 199 336 35 26 chr9 25727992 25728108 -92134519 + L2 LINE L2 2440 2556 -758 228 313 104 0 chr9 25728388 25728455 -92134172 + MIR SINE MIR 33 106 -156 332 362 67 82 chr9 25729181 25729496 -92133131 + L2 LINE L2 2963 3272 0 245 222 42 14 chr9 25729868 25729940 -92132687 + CT-rich Low_complexity Low_complexity 6 79 0 245 343 9 9 chr9 25730982 25731087 -92131540 - L1MC/D LINE L1 -2020 5788 5684 405 302 99 21 chr9 25731364 25731556 -92131071 - MIR SINE MIR -17 245 39 208 383 53 0 chr9 25731807 25731901 -92130726 + L2 LINE L2 3215 3313 0 383 151 0 0 chr9 25734766 25734839 -92127788 - L1MA8 LINE L1 0 6291 6219 22 35 0 0 chr9 25735481 25735510 -92127117 + AT_rich Low_complexity Low_complexity 1 29 0 2233 141 0 5 chr9 25735944 25736314 -92126313 - L1PB1 LINE L1 -1 6150 5783 300 169 0 0 chr9 25736325 25736402 -92126225 + (TA)n Simple_repeat Simple_repeat 2 78 0 6234 19 35 0 chr9 25736505 25737237 -92125390 - L1PA3 LINE L1 0 6155 5398 * 10167 27 1 0 chr9 25737231 25738451 -92124176 + L1PA3 LINE L1 4163 5383 -763 3299 94 62 3 chr9 25738447 25739027 -92123600 - L1PB1 LINE L1 -371 5780 5169 * 1031 175 41 0 chr9 25739007 25739201 -92123426 - L1PBa LINE L1 -5270 1593 1392 * 834 221 0 15 chr9 25739198 25739393 -92123234 - L1PBa LINE L1 -6666 197 6 * 377 329 58 0 chr9 25739740 25739877 -92122750 - MIR SINE MIR -70 192 48 1724 174 3 7 chr9 25740892 25741174 -92121453 + AluJb SINE Alu 2 282 -30 300 53 0 0 chr9 25741178 25741216 -92121411 + (TC)n Simple_repeat Simple_repeat 1 38 0 193 308 68 43 chr9 25741237 25741354 -92121273 + MIR SINE MIR 102 221 -41 597 279 19 0 chr9 25741362 25741516 -92121111 - MIR SINE MIR -21 241 85 920 221 211 33 chr9 25741516 25741847 -92120780 + MSTD LTR MaLR 1 390 -6 216 358 0 0 chr9 25741849 25741916 -92120711 - MIR SINE MIR -183 79 13 1704 192 7 0 chr9 25743206 25743498 -92119129 + AluJo SINE Alu 2 295 -17 323 351 85 6 chr9 25743655 25743820 -92118807 - MER5B DNA MER1_type 0 178 1 183 298 53 0 chr9 25743831 25743888 -92118739 + MER5B DNA MER1_type 119 178 0 203 225 0 0 chr9 25744244 25744284 -92118343 - L2 LINE L2 -17 3255 3216 868 262 37 12 chr9 25744312 25744556 -92118071 - MIR SINE MIR 0 262 13 7125 50 7 0 chr9 25746271 25747153 -92115474 + L1PA7 LINE L1 5259 6146 -8 207 0 0 0 chr9 25748363 25748386 -92114241 + (T)n Simple_repeat Simple_repeat 1 23 0 255 103 0 0 chr9 25749822 25749841 -92112786 + (TG)n Simple_repeat Simple_repeat 1 58 0 255 103 0 0 chr9 25749841 25749880 -92112747 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 51 0 0 chr9 25749976 25750015 -92112612 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr9 25752825 25752847 -92109780 + AT_rich Low_complexity Low_complexity 1 22 0 195 184 41 20 chr9 25753440 25753489 -92109138 - L2 LINE L2 0 3313 3264 281 270 212 16 chr9 25753707 25753896 -92108731 + MIR SINE MIR 35 260 -2 1840 174 33 30 chr9 25754824 25755187 -92107440 - THE1B LTR MaLR 0 364 1 10985 108 12 10 chr9 25755187 25755495 -92107132 - THE1B-int LTR MaLR 0 1580 1274 2822 3 0 0 chr9 25755495 25755799 -92106828 - AluYa5 SINE Alu -7 304 1 10985 108 12 10 chr9 25755799 25757067 -92105560 - THE1B-int LTR MaLR -306 1274 1 1835 158 38 49 chr9 25757067 25757435 -92105192 - THE1B LTR MaLR 0 364 1 1552 209 18 4 chr9 25757805 25758083 -92104544 - AluJb SINE Alu -30 282 1 222 329 161 7 chr9 25758142 25758285 -92104342 - MIR SINE MIR -49 213 49 21 0 0 0 chr9 25759074 25759095 -92103532 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr9 25759148 25759175 -92103452 + (TA)n Simple_repeat Simple_repeat 2 28 0 294 307 68 0 chr9 25759251 25759339 -92103288 - L2 LINE L2 -26 3246 3153 468 280 153 11 chr9 25759393 25759582 -92103045 + MIR SINE MIR 46 261 -1 374 385 52 38 chr9 25759934 25760355 -92102272 - L2 LINE L2 -527 2787 2361 3523 171 52 16 chr9 25760525 25761145 -92101482 + L1MA3 LINE L1 18 659 -6906 12743 162 13 9 chr9 25761153 25763282 -92099345 + L1MA3 LINE L1 805 2941 -4624 17286 194 60 8 chr9 25763311 25769894 -92092733 - L1P4 LINE L1 -696 6910 7 1452 204 42 7 chr9 25769893 25770299 -92092328 + L1MA3 LINE L1 4305 4724 -2841 * 5897 144 16 44 chr9 25770309 25771707 -92090920 + L1MA3 LINE L1 6380 7724 0 2757 123 84 71 chr9 25772231 25772455 -92090172 - MER4A LTR ERV1 0 600 381 2481 66 0 0 chr9 25772455 25772756 -92089871 + AluY SINE Alu 1 301 -10 2757 123 84 71 chr9 25772756 25773123 -92089504 - MER4A LTR ERV1 -219 381 1 191 342 72 18 chr9 25773561 25773672 -92088955 - MIR SINE MIR -127 135 19 203 280 0 0 chr9 25773730 25773780 -92088847 - L3 LINE CR1 -254 1323 1274 295 246 30 46 chr9 25773829 25773944 -92088683 - MER101 LTR ERV1 -14 556 341 1044 174 119 0 chr9 25774103 25774304 -92088323 - MER101B LTR ERV1 -342 228 4 586 282 74 10 chr9 25774311 25774513 -92088114 - LTR49-int LTR ERV1 -1023 7097 6883 1916 175 26 17 chr9 25774691 25775113 -92087514 - LTR49-int LTR ERV1 -1830 4501 4076 304 140 60 70 chr9 25775126 25775226 -92087401 - LTR49-int LTR ERV1 -2369 2567 2469 * 1558 208 77 42 chr9 25775217 25775906 -92086721 - LTR49-int LTR ERV1 -2554 2569 1857 276 169 0 0 chr9 25775901 25775960 -92086667 - LTR49-int LTR ERV1 -3870 2888 2830 * 437 181 39 216 chr9 25776083 25776315 -92086312 - LTR49-int LTR ERV1 -2882 3449 3259 1065 193 69 43 chr9 25776363 25776896 -92085731 - LTR49-int LTR ERV1 -3059 3272 1211 601 250 59 7 chr9 25776896 25777048 -92085579 - MER34C LTR ERV1 -181 404 245 535 184 28 127 chr9 25777050 25777262 -92085365 - LTR49-int LTR ERV1 -4067 1056 866 192 77 0 0 chr9 25777277 25777303 -92085324 + (CAA)n Simple_repeat Simple_repeat 2 27 0 831 194 9 13 chr9 25777389 25777562 -92085065 - LTR49-int LTR ERV1 -2790 2090 1380 2322 198 52 25 chr9 25777672 25778488 -92084139 - LTR49-int LTR ERV1 -3268 1612 516 1860 191 19 25 chr9 25778509 25778939 -92083688 - LTR49-int LTR ERV1 -4617 1329 1 565 217 14 14 chr9 25778941 25779079 -92083548 - LTR49 LTR ERV1 0 595 458 337 222 13 52 chr9 25779997 25780115 -92082512 - MER101B LTR ERV1 -1 538 361 1262 178 13 13 chr9 25780287 25780517 -92082110 - MER101B LTR ERV1 -340 230 1 257 271 0 34 chr9 25780874 25780933 -92081694 - MER2 DNA MER2_type 0 345 289 2296 183 23 72 chr9 25780933 25781533 -92081094 - L1MB7 LINE L1 -87 6097 5527 231 167 0 0 chr9 25781642 25781684 -92080943 + (TG)n Simple_repeat Simple_repeat 1 42 0 1513 191 9 38 chr9 25782354 25782673 -92079954 - AluJo SINE Alu -2 310 1 198 0 0 0 chr9 25833225 25833247 -92029380 + (T)n Simple_repeat Simple_repeat 1 22 0 28 0 0 0 chr9 25834233 25834261 -92028366 + AT_rich Low_complexity Low_complexity 1 28 0 1365 206 39 32 chr9 25834404 25834714 -92027913 - AluJb SINE Alu 0 312 1 2137 121 3 13 chr9 25834735 25835042 -92027585 - AluSx SINE Alu -8 304 1 242 128 26 0 chr9 25835655 25835694 -92026933 + L2 LINE L2 3263 3302 -11 516 297 88 74 chr9 25836589 25837091 -92025536 + HAL1 LINE L1 4 512 -1995 1606 251 142 57 chr9 25837259 25838134 -92024493 + HAL1 LINE L1 750 1698 -809 379 328 128 10 chr9 25838336 25838531 -92024096 - L3b LINE CR1 -53 1530 1313 218 191 0 0 chr9 25838584 25838626 -92024001 + CT-rich Low_complexity Low_complexity 2 43 0 795 11 0 0 chr9 25838691 25838783 -92023844 - L1PA3 LINE L1 -3 6152 6061 27 87 0 0 chr9 25839223 25839292 -92023335 + AT_rich Low_complexity Low_complexity 1 69 0 234 220 0 0 chr9 25841066 25841125 -92021502 + (TA)n Simple_repeat Simple_repeat 2 60 0 431 241 56 9 chr9 25841267 25841375 -92021252 - MIR SINE MIR -103 159 47 311 305 66 13 chr9 25843034 25843185 -92019442 - L2 LINE L2 -106 3207 3049 400 306 65 32 chr9 25844608 25844794 -92017833 - MIR SINE MIR -1 261 70 22 0 0 0 chr9 25845113 25845135 -92017492 + AT_rich Low_complexity Low_complexity 1 22 0 372 254 113 0 chr9 25845831 25845847 -92016780 - L1MA10 LINE L1 -7 6327 6312 1082 224 68 60 chr9 25845847 25846122 -92016505 - L1ME1 LINE L1 -14 6152 5870 1916 173 0 0 chr9 25846122 25846417 -92016210 + AluSx SINE Alu 2 296 -16 1082 224 68 60 chr9 25846417 25846609 -92016018 - L1ME1 LINE L1 -296 5870 5681 2315 128 47 11 chr9 25846654 25847014 -92015613 + THE1C LTR MaLR 3 375 0 9434 138 32 14 chr9 25847014 25848563 -92014064 + THE1C-int LTR MaLR 1 1577 -3 2008 145 56 11 chr9 25848567 25848925 -92013702 + THE1C LTR MaLR 2 375 0 829 96 0 0 chr9 25850705 25850820 -92011807 - AluSc SINE Alu -19 290 176 230 185 19 0 chr9 25850820 25850874 -92011753 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr9 25851369 25851392 -92011235 + AT_rich Low_complexity Low_complexity 1 23 0 229 291 0 0 chr9 25851579 25851634 -92010993 - MIR3 SINE MIR -54 154 100 202 146 24 0 chr9 25852227 25852268 -92010359 + (TA)n Simple_repeat Simple_repeat 2 43 0 295 284 110 40 chr9 25852276 25852466 -92010161 - MIR SINE MIR -57 205 4 559 303 194 46 chr9 25854198 25854565 -92008062 + L2 LINE L2 2831 3251 -62 185 283 50 17 chr9 25854707 25854767 -92007860 - MIR SINE MIR -95 167 106 3372 192 17 10 chr9 25854767 25855459 -92007168 + L1PB4 LINE L1 5458 6154 -2 22 35 0 0 chr9 25855537 25855566 -92007061 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr9 25855832 25855855 -92006772 + AT_rich Low_complexity Low_complexity 1 23 0 1763 209 64 11 chr9 25856238 25856674 -92005953 - MER65C LTR ERV1 0 461 3 350 202 0 11 chr9 25859635 25859724 -92002903 + CT-rich Low_complexity Low_complexity 4 91 0 19400 48 14 1 chr9 25860618 25863102 -91999525 - L1P LINE L1 -1946 4200 1685 1351 37 0 0 chr9 25863101 25863264 -91999363 + L1P LINE L1 4196 4358 -1788 * 209 361 71 59 chr9 25863426 25863664 -91998963 + MIR SINE MIR 1 241 -21 22 0 0 0 chr9 25863804 25863826 -91998801 + AT_rich Low_complexity Low_complexity 1 22 0 185 350 41 0 chr9 25864698 25864795 -91997832 + L3 LINE CR1 304 404 -1173 622 192 0 0 chr9 25865183 25865287 -91997340 + MER33 DNA MER1_type 6 109 -215 656 185 39 0 chr9 25866588 25866718 -91995909 + MER3 DNA MER1_type 40 127 -82 1370 172 89 11 chr9 25866720 25867068 -91995559 + MER3 DNA MER1_type 2238 2612 0 617 225 0 21 chr9 25867361 25867503 -91995124 - FLAM_C SINE Alu -4 139 1 23 33 0 0 chr9 25867503 25867533 -91995094 + AT_rich Low_complexity Low_complexity 1 30 0 332 257 43 21 chr9 25867857 25867997 -91994630 - L1ME4a LINE L1 -5 6116 5974 223 295 67 57 chr9 25869397 25869502 -91993125 - L2 LINE L2 -5 3308 3203 201 227 0 23 chr9 25869598 25869642 -91992985 - L2 LINE L2 -212 3060 3018 192 372 60 70 chr9 25869632 25870046 -91992581 - L2 LINE L2 -17 3255 2846 * 324 333 0 9 chr9 25870474 25870582 -91992045 + MIR SINE MIR 50 156 -106 389 347 91 56 chr9 25870668 25871207 -91991420 - L2 LINE L2 -955 2359 1802 549 72 48 0 chr9 25871401 25871484 -91991143 + AluSg SINE Alu 1 87 -223 447 92 0 0 chr9 25871852 25871917 -91990710 + (CA)n Simple_repeat Simple_repeat 2 66 0 4463 203 26 8 chr9 25872488 25873759 -91988868 - L1PB1 LINE L1 -655 5496 4200 4310 110 14 3 chr9 25873746 25874393 -91988234 + L1PB1 LINE L1 5497 6150 -1 2701 3 0 0 chr9 25875013 25875307 -91987320 - AluYa5 SINE Alu -17 294 1 761 211 0 0 chr9 25875310 25875452 -91987175 - FLAM_C SINE Alu -1 142 1 27 29 0 0 chr9 25875655 25875689 -91986938 + AT_rich Low_complexity Low_complexity 1 34 0 1985 128 10 0 chr9 25875837 25876126 -91986501 - AluSq SINE Alu -21 292 1 225 159 0 0 chr9 25876158 25876202 -91986425 + (TA)n Simple_repeat Simple_repeat 2 45 0 282 308 8 15 chr9 25876256 25876389 -91986238 - L1M4 LINE L1 -3163 2983 2852 563 274 79 19 chr9 25876693 25876908 -91985719 - MLT1J2 LTR MaLR -220 230 3 280 312 100 4 chr9 25877185 25877416 -91985211 - L1M4 LINE L1 -3759 2387 2135 346 350 106 18 chr9 25878687 25879244 -91983383 + L1MC4a LINE L1 5303 5908 -1900 204 123 77 62 chr9 25879447 25879512 -91983115 + A-rich Low_complexity Low_complexity 5 70 0 218 306 24 47 chr9 25879941 25880026 -91982601 + MIR SINE MIR 6 88 -174 382 253 157 30 chr9 25880151 25880317 -91982310 + MIR SINE MIR 50 236 -26 233 383 16 8 chr9 25880686 25880814 -91981813 + MIR3 SINE MIR 77 205 -3 306 0 0 0 chr9 25881109 25881143 -91981484 + (T)n Simple_repeat Simple_repeat 1 34 0 216 0 0 0 chr9 25884038 25884062 -91978565 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 2030 117 7 0 chr9 25884162 25884517 -91978110 - AluSp SINE Alu 0 359 3 333 362 0 16 chr9 25888409 25888536 -91974091 - MIR SINE MIR -65 143 19 372 342 61 0 chr9 25888937 25889133 -91973494 - MIR SINE MIR 0 262 55 25 0 0 0 chr9 25889982 25890007 -91972620 + AT_rich Low_complexity Low_complexity 1 25 0 279 250 0 0 chr9 25891468 25891520 -91971107 - L2 LINE L2 -7 3306 3255 345 47 0 0 chr9 25891653 25891696 -91970931 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr9 25891720 25891743 -91970884 + AT_rich Low_complexity Low_complexity 1 23 0 390 209 22 33 chr9 25892111 25892202 -91970425 - MER63 DNA MER1_type -82 754 39 492 260 31 52 chr9 25893799 25893991 -91968636 + MIR SINE MIR 75 262 0 663 214 128 5 chr9 25894172 25894359 -91968268 + MER6B DNA MER2_type 1 210 0 206 284 87 43 chr9 25894415 25894669 -91967958 + L2 LINE L2 1917 2181 -1133 315 311 67 28 chr9 25896001 25896181 -91966446 - MIR SINE MIR -73 189 3 550 349 133 26 chr9 25896651 25897330 -91965297 - L2 LINE L2 0 3272 2527 456 264 18 42 chr9 25897600 25897767 -91964860 + MIR SINE MIR 2 164 -98 994 350 63 35 chr9 25897821 25898453 -91964174 - L2 LINE L2 -959 2355 1706 380 204 30 106 chr9 25899018 25899150 -91963477 - L2 LINE L2 -17 3296 3175 292 320 195 30 chr9 25900226 25900426 -91962201 + MIR SINE MIR 3 235 -27 192 214 54 54 chr9 25900392 25900448 -91962179 + L2 LINE L2 3207 3262 -10 * 2361 156 36 5 chr9 25900997 25901439 -91961188 - L1PA13 LINE L1 -2 6161 5706 492 299 76 11 chr9 25903356 25903540 -91959087 - L2 LINE L2 0 3313 3118 617 256 12 23 chr9 25903935 25904107 -91958520 + MER63A DNA MER1_type 41 210 0 1751 249 48 38 chr9 25904385 25904967 -91957660 + MLT1G LTR MaLR 1 588 -2 366 259 80 82 chr9 25905524 25905853 -91956774 - MLT1H LTR MaLR -4 545 125 2771 280 76 41 chr9 25906552 25908866 -91953761 - L1ME2 LINE L1 0 6233 3818 2461 54 0 0 chr9 25908867 25909163 -91953464 - AluY SINE Alu -14 297 2 1287 79 69 0 chr9 25909183 25909372 -91953255 - L1PA11 LINE L1 -2 6172 5971 322 311 231 11 chr9 25909372 25909456 -91953171 - L1ME2 LINE L1 -4419 1977 1913 1892 170 25 22 chr9 25909456 25909820 -91952807 - MLT1A1 LTR MaLR 0 365 1 322 311 231 11 chr9 25909820 25909999 -91952628 - L1ME2 LINE L1 -4483 1913 1656 337 336 124 12 chr9 25910037 25910278 -91952349 - L1ME2 LINE L1 -5257 948 681 221 290 65 19 chr9 25911564 25911671 -91950956 + MIR SINE MIR 96 207 -55 3086 45 0 0 chr9 25911849 25912226 -91950401 - L1PA5 LINE L1 -8 6146 5770 42239 36 21 1 chr9 25912238 25918266 -91944361 - L1PA2 LINE L1 0 6155 3 1344 55 2 3 chr9 25918266 25918445 -91944182 - L1PA5 LINE L1 -371 5783 5607 208 300 17 0 chr9 25921942 25922002 -91940625 + MIR SINE MIR 87 147 -61 3766 153 27 2 chr9 25922564 25923196 -91939431 - Tigger1 DNA MER2_type 0 2418 1771 8822 151 39 10 chr9 25923196 25924779 -91937848 - Tigger1 DNA MER2_type -788 1630 2 662 204 0 0 chr9 25925808 25925916 -91936711 + Tigger3(Golem) DNA MER2_type 2 109 -2920 * 3794 149 67 12 chr9 25925915 25926661 -91935966 + Tigger3(Golem) DNA MER2_type 2241 3027 -2 213 39 0 0 chr9 25926942 25926968 -91935659 + (TA)n Simple_repeat Simple_repeat 1 26 0 382 288 112 36 chr9 25927103 25927686 -91934941 + L1M4 LINE L1 2884 3510 -2636 594 287 162 14 chr9 25927731 25928288 -91934339 + L1M4 LINE L1 4326 4964 -1182 24 0 0 0 chr9 25928824 25928848 -91933779 + AT_rich Low_complexity Low_complexity 1 24 0 210 282 153 24 chr9 25930428 25930552 -91932075 + MER5B DNA MER1_type 38 177 -1 24 53 0 0 chr9 25931020 25931058 -91931569 + AT_rich Low_complexity Low_complexity 1 38 0 214 309 0 0 chr9 25931373 25931428 -91931199 + (TA)n Simple_repeat Simple_repeat 1 55 0 249 401 18 6 chr9 25932124 25932291 -91930336 - L2 LINE L2 -1268 2046 1878 279 79 0 0 chr9 25932869 25932907 -91929720 + (T)n Simple_repeat Simple_repeat 1 38 0 267 31 0 0 chr9 25933059 25933091 -91929536 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1930 122 0 0 chr9 25933104 25933375 -91929252 - AluSg SINE Alu -39 271 1 364 311 110 28 chr9 25933789 25934107 -91928520 - L1MC4 LINE L1 -369 7673 7330 306 0 0 0 chr9 25934199 25934233 -91928394 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 264 242 24 40 chr9 25934255 25934379 -91928248 - L1MC5 LINE L1 -738 7223 7102 26 30 0 0 chr9 25935087 25935120 -91927507 + AT_rich Low_complexity Low_complexity 1 33 0 535 280 106 32 chr9 25935614 25935832 -91926795 - L2 LINE L2 -639 2675 2442 27 100 0 0 chr9 25936064 25936154 -91926473 + AT_rich Low_complexity Low_complexity 1 90 0 358 311 77 26 chr9 25936163 25936436 -91926191 - HAL1 LINE L1 -211 2296 2010 242 256 188 8 chr9 25936556 25936646 -91925981 - HAL1 LINE L1 -709 1798 1726 732 232 57 0 chr9 25936646 25936823 -91925804 - MER5A DNA MER1_type -1 188 2 242 256 188 8 chr9 25936823 25936865 -91925762 - HAL1 LINE L1 -781 1726 1642 189 107 0 0 chr9 25937131 25937159 -91925468 + (CAA)n Simple_repeat Simple_repeat 1 28 0 311 273 83 75 chr9 25937415 25937763 -91924864 - HAL1 LINE L1 -1045 1462 1112 210 71 0 0 chr9 25938156 25938184 -91924443 + (T)n Simple_repeat Simple_repeat 1 28 0 230 315 25 74 chr9 25938271 25938433 -91924194 - HAL1 LINE L1 -1871 636 483 448 292 17 17 chr9 25938724 25938844 -91923783 + L2 LINE L2 3150 3269 -3 342 0 0 0 chr9 25939758 25939796 -91922831 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 303 21 7 chr9 25940589 25940734 -91921893 + L2 LINE L2 3167 3313 0 236 196 0 0 chr9 25941216 25941262 -91921365 + (CATA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr9 25942188 25942217 -91920410 + AT_rich Low_complexity Low_complexity 1 29 0 366 274 183 11 chr9 25942934 25943109 -91919518 + MIR SINE MIR 58 262 0 261 313 21 0 chr9 25944258 25944354 -91918273 - L3 LINE CR1 -573 1004 907 209 244 0 24 chr9 25946650 25946732 -91915895 + CT-rich Low_complexity Low_complexity 3 82 0 2043 84 9 75 chr9 25946856 25947176 -91915451 - AluSc SINE Alu -10 299 1 267 259 0 0 chr9 25947730 25947788 -91914839 + (TG)n Simple_repeat Simple_repeat 1 58 0 247 352 22 0 chr9 25948244 25948335 -91914292 + MIR3 SINE MIR 67 159 -49 223 229 21 0 chr9 25948552 25948600 -91914027 + MIR3 SINE MIR 150 198 -10 320 346 149 5 chr9 25950240 25950428 -91912199 + MIR SINE MIR 13 227 -35 876 222 9 47 chr9 25950525 25950737 -91911890 + MER20 DNA MER1_type 16 219 0 27 73 0 0 chr9 25954393 25954448 -91908179 + AT_rich Low_complexity Low_complexity 1 55 0 311 351 48 25 chr9 25955145 25955356 -91907271 - MIR SINE MIR -39 223 5 507 318 91 9 chr9 25955938 25956158 -91906469 - MIR SINE MIR -6 256 19 3305 180 109 9 chr9 25956414 25957165 -91905462 - LTR1B LTR ERV1 0 826 1 32 67 0 0 chr9 25957173 25957233 -91905394 + AT_rich Low_complexity Low_complexity 1 60 0 216 333 145 13 chr9 25958925 25959084 -91903543 - MIR SINE MIR -19 243 64 21 57 0 0 chr9 25959813 25959848 -91902779 + AT_rich Low_complexity Low_complexity 1 35 0 218 327 0 0 chr9 25960966 25961021 -91901606 + MIR SINE MIR 40 94 -114 1376 306 63 39 chr9 25961739 25962379 -91900248 + L2 LINE L2 2035 2690 -624 685 278 64 0 chr9 25962379 25962552 -91900075 - MER5A DNA MER1_type -2 187 4 450 299 162 0 chr9 25962571 25962725 -91899902 + MER5A DNA MER1_type 9 187 -2 853 288 65 64 chr9 25962770 25963388 -91899239 + L2 LINE L2 2695 3313 0 929 179 0 12 chr9 25964648 25964810 -91897817 + FRAM SINE Alu 6 165 -11 296 339 0 27 chr9 25965449 25965561 -91897066 + MIR3 SINE MIR 88 196 -12 5946 101 21 2 chr9 25965790 25967445 -91895182 + L1PA14 LINE L1 4469 6159 -2 5347 186 68 17 chr9 25969226 25971356 -91891271 - L1MA9 LINE L1 -5 6307 4061 3514 221 50 14 chr9 25971353 25972329 -91890298 - L1MA9 LINE L1 -2315 3831 2821 * 253 117 83 17 chr9 25972338 25972398 -91890229 - L1PA8 LINE L1 0 6172 6109 * 16022 178 12 6 chr9 25972385 25975184 -91887443 - L1PA10 LINE L1 -80 6403 3360 1723 152 56 0 chr9 25975184 25975454 -91887173 - AluSg SINE Alu -23 287 3 16022 178 12 6 chr9 25975454 25976445 -91886182 - L1PA10 LINE L1 -3123 3360 2376 * 41239 59 6 7 chr9 25976440 25982601 -91880026 - L1PA4 LINE L1 0 6155 1 4440 222 19 54 chr9 25982602 25984261 -91878366 - L1PA10 LINE L1 -4070 2391 771 2522 195 46 4 chr9 25984266 25984747 -91877880 - L1PA10 LINE L1 -5372 503 3 1918 242 45 44 chr9 25984748 25985773 -91876854 - L1M4c LINE L1 -3315 2719 1677 408 287 11 0 chr9 25985848 25985935 -91876692 - Tigger7 DNA MER2_type 0 2587 2500 1799 113 25 3 chr9 25985935 25986217 -91876410 + MER57-int LTR ERV1 4521 4808 -2729 6913 221 65 20 chr9 25986230 25987780 -91874847 + MER52A LTR ERV1 6 1755 0 601 135 95 40 chr9 25987798 25987946 -91874681 - Tigger7 DNA MER2_type -104 2387 2232 297 254 0 0 chr9 25987944 25987999 -91874628 - Tigger7 DNA MER2_type -678 55 1 * 2651 267 73 17 chr9 25987999 25989478 -91873149 - L1M4c LINE L1 -4523 1513 322 1940 309 92 10 chr9 25989484 25990189 -91872438 - L1 LINE L1 -5181 1122 360 200 94 0 31 chr9 25990200 25990232 -91872395 + (CTTTA)n Simple_repeat Simple_repeat 3 33 0 232 274 162 17 chr9 25990691 25990808 -91871819 - MIR SINE MIR -17 245 112 1669 117 17 0 chr9 25990818 25991049 -91871578 + AluSq SINE Alu 1 235 -78 222 62 0 0 chr9 25991069 25991101 -91871526 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2501 253 167 25 chr9 25991843 25993284 -91869343 - L1M4 LINE L1 -873 5342 3697 5813 26 4 0 chr9 25993286 25993970 -91868657 + L1PA4 LINE L1 5469 6155 0 4118 271 78 35 chr9 25993995 25994116 -91868511 - L1MEc LINE L1 -3477 2738 2624 1448 221 54 20 chr9 25994116 25994469 -91868158 - MLT1A1 LTR MaLR 0 365 1 4118 271 78 35 chr9 25994469 25994613 -91868014 - L1MEc LINE L1 -3591 2624 2488 771 264 93 35 chr9 25994613 25994958 -91867669 - MLT1A1 LTR MaLR 0 365 1 4118 271 78 35 chr9 25994958 25995524 -91867103 - L1MEc LINE L1 -3727 2488 1948 2082 106 7 17 chr9 25995524 25995817 -91866810 + AluSg SINE Alu 1 290 -20 4118 271 78 35 chr9 25995817 25997386 -91865241 - L1MEc LINE L1 -4267 1948 254 1757 203 6 103 chr9 25997386 25997893 -91864734 - LTR22A LTR ERVK 0 458 1 4118 271 78 35 chr9 25997893 25998127 -91864500 - L1MEc LINE L1 -5961 254 31 3129 209 34 17 chr9 25998279 25999036 -91863591 - L1MB8 LINE L1 0 6178 5409 392 263 101 86 chr9 25999310 25999519 -91863108 + MER58C DNA MER1_type 2 213 -2 41326 61 3 7 chr9 26000538 26006718 -91855909 - L1PA4 LINE L1 -3 6152 1 1949 146 7 7 chr9 26006721 26007022 -91855605 - AluSx SINE Alu -11 301 1 2280 102 3 0 chr9 26008159 26008481 -91854146 - AluSx SINE Alu 0 323 1 435 257 14 36 chr9 26009047 26009187 -91853440 + L2 LINE L2 2651 2787 -527 503 285 119 22 chr9 26009197 26009516 -91853111 - MLT1I LTR MaLR 0 409 60 578 329 126 4 chr9 26009568 26009799 -91852828 + L2 LINE L2 2812 3070 -243 290 164 73 0 chr9 26009813 26009868 -91852759 - MER58 DNA MER1_type -2201 219 161 385 287 28 19 chr9 26009941 26010049 -91852578 + L2 LINE L2 3193 3301 -12 360 320 116 7 chr9 26010154 26010301 -91852326 - MIR SINE MIR -19 243 81 462 227 296 0 chr9 26010526 26010658 -91851969 - MER5B DNA MER1_type -5 173 3 2921 100 37 2 chr9 26012699 26013128 -91849499 - MLT2A1 LTR ERVL 0 444 1 792 285 72 49 chr9 26013260 26013607 -91849020 + LTR33 LTR ERVL 1 355 -166 336 170 0 0 chr9 26013606 26013659 -91848968 - Alu SINE Alu -249 53 1 * 1456 195 18 28 chr9 26013920 26014202 -91848425 + AluJo SINE Alu 1 279 -33 2691 58 17 0 chr9 26014202 26014547 -91848080 + L1PA7 LINE L1 5804 6154 0 288 0 0 0 chr9 26014646 26014678 -91847949 + (CA)n Simple_repeat Simple_repeat 2 33 0 214 178 0 0 chr9 26015346 26015391 -91847236 + T-rich Low_complexity Low_complexity 1 45 0 2155 100 10 3 chr9 26016182 26016492 -91846135 - AluSq SINE Alu -1 312 1 712 217 11 5 chr9 26016582 26016766 -91845861 - L1MB2 LINE L1 0 6171 5987 2198 113 0 0 chr9 26017092 26017394 -91845233 - AluSc SINE Alu -7 302 1 213 184 20 20 chr9 26017514 26017563 -91845064 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 307 278 0 46 chr9 26017745 26017853 -91844774 + MIR SINE MIR 159 261 -1 825 214 10 36 chr9 26018820 26019012 -91843615 - MER5A DNA MER1_type -1 188 2 399 206 0 0 chr9 26019377 26019450 -91843177 + MER6 DNA MER2_type 143 215 -390 23 86 0 0 chr9 26019806 26019864 -91842763 + AT_rich Low_complexity Low_complexity 1 58 0 21 57 0 0 chr9 26021002 26021037 -91841590 + AT_rich Low_complexity Low_complexity 1 35 0 360 333 81 24 chr9 26021632 26021842 -91840785 - LTR16A LTR ERVL -6 444 223 539 269 118 5 chr9 26021851 26022037 -91840590 - HERV16 LTR ERVL -3062 1934 1728 199 343 7 68 chr9 26022367 26022513 -91840114 + MIR SINE MIR 86 222 -40 2183 120 0 0 chr9 26023372 26023673 -91838954 - AluSx SINE Alu -11 301 1 2226 87 0 3 chr9 26025270 26025570 -91837057 + AluSg SINE Alu 1 299 -11 21 36 0 0 chr9 26025735 26025763 -91836864 + AT_rich Low_complexity Low_complexity 1 28 0 1279 259 141 13 chr9 26025841 26027007 -91835620 + L1MD2 LINE L1 1692 2973 -3242 341 316 14 73 chr9 26027011 26027229 -91835398 + Zaphod DNA AcHobo 55 259 -3772 588 274 75 24 chr9 26027335 26027547 -91835080 + Zaphod DNA AcHobo 438 660 -3371 260 264 13 71 chr9 26027591 26027746 -91834881 + Zaphod DNA AcHobo 1868 2013 -2018 2382 230 60 33 chr9 26027768 26028689 -91833938 + Zaphod DNA AcHobo 2454 3399 -632 437 247 184 47 chr9 26028737 26029039 -91833588 + Zaphod DNA AcHobo 3614 3976 -55 1409 177 47 13 chr9 26029039 26029356 -91833271 - L1MA9 LINE L1 -10 6302 5975 437 247 184 47 chr9 26029356 26029417 -91833210 + Zaphod DNA AcHobo 3976 4027 -4 182 266 89 13 chr9 26030099 26030178 -91832449 - L2 LINE L2 -40 3273 3189 22 35 0 0 chr9 26030374 26030403 -91832224 + AT_rich Low_complexity Low_complexity 1 29 0 389 297 48 21 chr9 26031121 26031266 -91831361 + MIR SINE MIR 114 262 0 24 53 0 0 chr9 26032059 26032097 -91830530 + AT_rich Low_complexity Low_complexity 1 38 0 189 147 0 0 chr9 26032104 26032138 -91830489 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 387 60 0 0 chr9 26032163 26032213 -91830414 + (GA)n Simple_repeat Simple_repeat 2 51 0 2744 265 73 23 chr9 26033104 26034453 -91828174 + L1MD2 LINE L1 4086 5505 -730 1046 220 161 24 chr9 26034449 26034858 -91827769 + L1MD2 LINE L1 5710 6174 -254 * 5802 98 31 2 chr9 26034872 26036142 -91826485 + L1PA13 LINE L1 4846 6144 -19 227 317 117 39 chr9 26036976 26037181 -91825446 + MLT1K LTR MaLR 313 533 -55 25 0 0 0 chr9 26038403 26038428 -91824199 + AT_rich Low_complexity Low_complexity 1 25 0 32 67 0 0 chr9 26038851 26038911 -91823716 + AT_rich Low_complexity Low_complexity 1 60 0 22 70 0 0 chr9 26039745 26039788 -91822839 + AT_rich Low_complexity Low_complexity 1 43 0 4804 220 21 53 chr9 26040324 26041549 -91821078 + L1MB8 LINE L1 11 1196 -5663 2463 224 59 5 chr9 26041683 26042696 -91819931 + L1MB8 LINE L1 5658 6729 -260 * 4273 51 0 0 chr9 26042693 26043238 -91819389 - L1P LINE L1 -3677 2469 1925 730 264 34 22 chr9 26043234 26043503 -91819124 + L1MB8 LINE L1 6718 6989 0 * 394 244 101 71 chr9 26043554 26043605 -91819022 + MLT1H LTR MaLR 377 425 -124 1873 115 7 27 chr9 26043605 26043901 -91818726 + AluY SINE Alu 1 290 -21 394 244 101 71 chr9 26043901 26044017 -91818610 + MLT1H LTR MaLR 425 549 0 556 318 20 40 chr9 26044077 26044329 -91818298 - MIR SINE MIR -14 248 2 287 218 90 8 chr9 26044335 26044468 -91818159 - L1ME4a LINE L1 -196 5925 5782 21 0 0 0 chr9 26044736 26044757 -91817870 + AT_rich Low_complexity Low_complexity 1 21 0 1116 259 63 71 chr9 26044963 26045580 -91817047 - L1MC4 LINE L1 -5 8037 7426 197 378 61 0 chr9 26047722 26047804 -91814823 - L2 LINE L2 -5 3267 3181 515 232 34 4 chr9 26048228 26048444 -91814183 + LTR37A LTR ERV1 110 412 -14 1537 81 0 19 chr9 26048540 26048751 -91813876 + AluY SINE Alu 92 298 -13 571 307 50 17 chr9 26049256 26049614 -91813013 - L1ME4a LINE L1 -216 5905 5536 1149 184 19 34 chr9 26051456 26051722 -91810905 - THE1C LTR MaLR -113 262 1 5192 135 6 10 chr9 26051722 26052529 -91810098 - THE1C-int LTR MaLR 0 1580 777 484 307 78 14 chr9 26053773 26053991 -91808636 + MIR SINE MIR 17 248 -14 218 175 0 0 chr9 26054021 26054061 -91808566 + (CCA)n Simple_repeat Simple_repeat 1 40 0 475 320 34 25 chr9 26054352 26054561 -91808066 - MIR SINE MIR -17 245 36 394 71 0 0 chr9 26054906 26054962 -91807665 - L1PB1 LINE L1 -3 6148 6093 371 97 16 0 chr9 26055037 26055099 -91807528 - L1PB1 LINE L1 -6 6145 6083 2530 86 11 0 chr9 26055173 26055524 -91807103 - L1PB1 LINE L1 -6 6145 5791 309 77 0 0 chr9 26055524 26055563 -91807064 + (TG)n Simple_repeat Simple_repeat 1 39 0 523 229 29 0 chr9 26055563 26055738 -91806889 + (TA)n Simple_repeat Simple_repeat 1 180 0 473 218 41 0 chr9 26055752 26055922 -91806705 + (TA)n Simple_repeat Simple_repeat 2 178 0 3487 167 15 7 chr9 26055931 26055942 -91806685 - L1PB1 LINE L1 -360 5791 5782 180 0 0 0 chr9 26055942 26055962 -91806665 + (CA)n Simple_repeat Simple_repeat 2 21 0 3487 167 15 7 chr9 26055962 26056982 -91805645 - L1PB1 LINE L1 -369 5782 4753 342 353 35 17 chr9 26058850 26059023 -91803604 - MIR3 SINE MIR -1 207 32 225 83 0 0 chr9 26061006 26061042 -91801585 + (CA)n Simple_repeat Simple_repeat 2 37 0 1133 245 116 48 chr9 26061327 26061566 -91801061 + Charlie2 DNA MER1_type 2061 2282 -580 2608 33 0 0 chr9 26061566 26061868 -91800759 + AluY SINE Alu 1 302 -9 1133 245 116 48 chr9 26061868 26062378 -91800249 + Charlie2 DNA MER1_type 2282 2861 -1 772 264 82 58 chr9 26062566 26062673 -91799954 + LTR16A LTR ERVL 113 216 -234 2032 125 63 34 chr9 26062673 26063024 -91799603 + THE1B LTR MaLR 1 361 -3 772 264 82 58 chr9 26063024 26063246 -91799381 + LTR16A LTR ERVL 216 450 0 381 276 12 0 chr9 26064838 26064936 -91797691 + MIR SINE MIR 50 147 -62 449 362 122 19 chr9 26064969 26065386 -91797241 - L2 LINE L2 -18 3295 2836 1194 244 95 65 chr9 26066017 26066054 -91796573 - LTR40a LTR ERVL 0 519 485 1483 234 42 18 chr9 26066054 26066435 -91796192 + MLT1B LTR MaLR 1 390 0 1194 244 95 65 chr9 26066435 26066456 -91796171 - LTR40a LTR ERVL -34 485 466 5350 67 56 7 chr9 26066456 26067186 -91795441 + MER4E LTR ERV1 1 766 0 1194 244 95 65 chr9 26067186 26067630 -91794997 - LTR40a LTR ERVL -53 466 1 21 57 0 0 chr9 26067775 26067810 -91794817 + AT_rich Low_complexity Low_complexity 1 35 0 2187 175 204 88 chr9 26068086 26068894 -91793733 - LTR28 LTR ERV1 0 1020 92 2188 109 0 3 chr9 26068894 26069196 -91793431 + AluSg1 SINE Alu 1 301 -8 2187 175 204 88 chr9 26069196 26069301 -91793326 - LTR28 LTR ERV1 -928 92 1 754 246 41 0 chr9 26070365 26070536 -91792091 + MER45A DNA AcHobo 1 178 0 30 89 0 0 chr9 26070766 26070845 -91791782 + AT_rich Low_complexity Low_complexity 1 79 0 24 32 0 0 chr9 26073735 26073766 -91788861 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr9 26074603 26074631 -91787996 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr9 26074695 26074725 -91787902 + AT_rich Low_complexity Low_complexity 1 30 0 2014 152 97 66 chr9 26075573 26076059 -91786568 + LTR1 LTR ERV1 28 528 -257 4512 128 91 83 chr9 26076059 26077615 -91785012 + pTR5 LTR ERV1 331 714 0 1562 146 43 4 chr9 26077615 26077869 -91784758 + LTR1 LTR ERV1 522 785 0 320 353 90 16 chr9 26078348 26078592 -91784035 - MIR SINE MIR 0 262 1 568 223 82 35 chr9 26079747 26080003 -91782624 - LTR37B LTR ERV1 -4 464 197 27 29 0 0 chr9 26080092 26080126 -91782501 + AT_rich Low_complexity Low_complexity 1 34 0 319 221 121 34 chr9 26080126 26080275 -91782352 - LTR37B LTR ERV1 -306 162 1 21 0 0 0 chr9 26080463 26080484 -91782143 + AT_rich Low_complexity Low_complexity 1 21 0 861 78 0 0 chr9 26081903 26082019 -91780608 + L1PA8 LINE L1 5800 5915 -257 2483 96 11 8 chr9 26082307 26082673 -91779954 + L1PA8 LINE L1 5800 6166 -6 189 0 0 0 chr9 26083279 26083300 -91779327 + (T)n Simple_repeat Simple_repeat 1 21 0 340 248 0 13 chr9 26084068 26084192 -91778435 - L1MCa LINE L1 -1339 6983 1995 28 29 0 0 chr9 26084321 26084356 -91778271 + AT_rich Low_complexity Low_complexity 1 35 0 246 310 112 36 chr9 26084366 26084724 -91777903 - L1MC/D LINE L1 -1893 5915 5531 30 0 0 0 chr9 26084911 26084941 -91777686 + AT_rich Low_complexity Low_complexity 1 30 0 253 352 0 0 chr9 26085151 26085242 -91777385 - MLT1K LTR MaLR -149 439 349 2013 130 33 3 chr9 26085958 26086258 -91776369 - THE1B LTR MaLR 0 364 56 714 55 0 0 chr9 26087328 26087419 -91775208 + (CAGAA)n Simple_repeat Simple_repeat 2 92 0 397 172 51 153 chr9 26087749 26087906 -91774721 + MLT1I LTR MaLR 14 154 -255 21 57 0 0 chr9 26088020 26088055 -91774572 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr9 26088126 26088152 -91774475 + AT_rich Low_complexity Low_complexity 1 26 0 400 261 75 43 chr9 26088370 26088531 -91774096 + MLT1I LTR MaLR 244 409 0 23 54 0 0 chr9 26089018 26089055 -91773572 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr9 26089126 26089153 -91773474 + AT_rich Low_complexity Low_complexity 1 27 0 185 320 48 75 chr9 26090625 26090772 -91771855 - MIR SINE MIR -28 234 92 765 298 42 4 chr9 26090798 26091036 -91771591 - MIR SINE MIR -6 256 10 191 336 154 25 chr9 26091766 26092046 -91770581 + L3 LINE CR1 956 1271 -306 741 286 77 4 chr9 26092063 26092297 -91770330 + MIR SINE MIR 12 262 0 294 328 23 35 chr9 26092318 26092489 -91770138 - L2 LINE L2 -2621 693 525 340 244 0 0 chr9 26092501 26092579 -91770048 + MER1B DNA MER1_type 44 121 -176 335 145 29 36 chr9 26093130 26093268 -91769359 + (TA)n Simple_repeat Simple_repeat 2 138 0 954 302 144 22 chr9 26094453 26094986 -91767641 - L2 LINE L2 -1001 2313 1716 1611 215 79 63 chr9 26095936 26096442 -91766185 - MER67D LTR ERV1 0 514 1 244 286 56 8 chr9 26096680 26096806 -91765821 + LTR67 LTR ERVL 410 541 -16 255 258 8 121 chr9 26097600 26097732 -91764895 + MIR SINE MIR 116 232 -30 981 325 117 15 chr9 26097950 26098786 -91763841 + L2 LINE L2 2370 3300 -13 186 43 0 0 chr9 26098786 26098809 -91763818 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 25 51 0 0 chr9 26098848 26098887 -91763740 + AT_rich Low_complexity Low_complexity 1 39 0 229 282 206 30 chr9 26099357 26099488 -91763139 + MIR SINE MIR 1 154 -108 191 189 19 0 chr9 26099579 26099632 -91762995 + (ATG)n Simple_repeat Simple_repeat 1 54 0 20446 105 28 0 chr9 26100637 26103375 -91759252 + L1PA7 LINE L1 2254 5042 -1112 2762 13 0 0 chr9 26103375 26103681 -91758946 + AluYb8 SINE Alu 2 307 -11 20446 105 28 0 chr9 26103681 26104820 -91757807 + L1PA7 LINE L1 5042 6148 -6 31 58 0 0 chr9 26105060 26105112 -91757515 + AT_rich Low_complexity Low_complexity 1 52 0 1256 225 121 17 chr9 26105829 26106184 -91756443 + MSTD LTR MaLR 1 392 -4 4805 182 33 46 chr9 26106518 26107910 -91754717 + L1MA10 LINE L1 4935 6312 -22 302 194 60 0 chr9 26108359 26108426 -91754201 - MER92C LTR ERV1 0 554 484 286 224 0 66 chr9 26108611 26108687 -91753940 - MER92C LTR ERV1 -483 71 1 1380 234 95 23 chr9 26109869 26110300 -91752327 - MLT1C LTR MaLR 0 467 6 21 0 0 0 chr9 26110656 26110677 -91751950 + AT_rich Low_complexity Low_complexity 1 21 0 1473 197 34 3 chr9 26110889 26111183 -91751444 + AluJo SINE Alu 1 303 -9 1473 202 56 43 chr9 26112377 26112838 -91749789 - MLT1C LTR MaLR 0 467 1 1517 137 105 43 chr9 26113124 26113475 -91749152 + THE1C LTR MaLR 3 375 0 468 279 8 85 chr9 26113793 26114051 -91748576 + L2 LINE L2 2904 3141 -172 22 0 0 0 chr9 26115929 26115951 -91746676 + AT_rich Low_complexity Low_complexity 1 22 0 276 111 0 0 chr9 26115958 26116003 -91746624 + (TA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 26116346 26116367 -91746260 + AT_rich Low_complexity Low_complexity 1 21 0 383 318 24 0 chr9 26116647 26116773 -91745854 + MIR SINE MIR 102 230 -32 2065 175 62 40 chr9 26118680 26119093 -91743534 + L1MA4A LINE L1 5635 6062 -241 1915 157 3 3 chr9 26119093 26119399 -91743228 + AluSx SINE Alu 1 306 -6 2065 175 62 40 chr9 26119399 26119466 -91743161 + L1MA4A LINE L1 6062 6126 -177 265 233 0 17 chr9 26119564 26119624 -91743003 + MLT1H LTR MaLR 91 149 -400 312 300 50 0 chr9 26119675 26119775 -91742852 + MLT1H LTR MaLR 240 344 -205 425 241 123 37 chr9 26120557 26120719 -91741908 - MLT1K LTR MaLR -27 561 386 272 299 52 0 chr9 26120831 26120908 -91741719 - MLT1K LTR MaLR -423 165 85 538 259 67 10 chr9 26121816 26122009 -91740618 - MER3 DNA MER1_type 0 209 6 687 369 50 19 chr9 26122252 26122713 -91739914 + L1MEd LINE L1 279 753 -5366 3919 222 66 15 chr9 26122819 26124836 -91737791 + L1MB7 LINE L1 4047 6167 -17 251 264 49 62 chr9 26125136 26125280 -91737347 + L1MEd LINE L1 1101 1242 -4877 262 365 0 0 chr9 26125352 26125497 -91737130 + HAL1 LINE L1 1453 1597 -910 229 355 43 0 chr9 26127191 26127284 -91735343 - L2 LINE L2 -221 3051 2955 515 286 141 14 chr9 26128971 26129184 -91733443 + MLT1I LTR MaLR 1 240 -169 1869 129 45 55 chr9 26131196 26131575 -91731052 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr9 26132908 26132932 -91729695 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr9 26133104 26133127 -91729500 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr9 26134909 26134930 -91727697 + (A)n Simple_repeat Simple_repeat 1 21 0 702 127 51 0 chr9 26135611 26135729 -91726898 - AluSg/x SINE Alu -1 311 188 189 254 73 0 chr9 26136002 26136057 -91726570 + MIR3 SINE MIR 98 156 -52 24 24 0 24 chr9 26136859 26136874 -91725753 + AT_rich Low_complexity Low_complexity 1 15 -26 571 86 0 0 chr9 26136874 26136955 -91725672 + L1PA6 LINE L1 6070 6150 -4 24 24 0 24 chr9 26136955 26136981 -91725646 + AT_rich Low_complexity Low_complexity 15 41 0 6219 225 21 52 chr9 26137098 26139731 -91722896 + L1PA16 LINE L1 2694 4978 -1188 1840 144 17 3 chr9 26139731 26140030 -91722597 - AluSx SINE Alu -9 303 1 6219 225 21 52 chr9 26140030 26141051 -91721576 + L1PA16 LINE L1 4978 6029 -137 410 49 16 0 chr9 26141061 26141122 -91721505 + (TA)n Simple_repeat Simple_repeat 1 62 0 678 143 0 0 chr9 26141172 26141291 -91721336 + L1PA16 LINE L1 6045 6163 -3 650 314 93 64 chr9 26141998 26142489 -91720138 + L2 LINE L2 2690 3203 -110 2375 87 7 0 chr9 26142489 26142799 -91719828 - AluSp SINE Alu -1 312 1 650 314 93 64 chr9 26142799 26142914 -91719713 + L2 LINE L2 3203 3313 0 355 225 34 0 chr9 26143420 26143442 -91719185 + MER58 DNA MER1_type 2318 2338 -82 207 0 0 0 chr9 26143442 26143465 -91719162 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 355 225 34 0 chr9 26143465 26143531 -91719096 + MER58 DNA MER1_type 2338 2409 -11 240 278 106 46 chr9 26143612 26143763 -91718864 - MIR SINE MIR -17 245 86 281 333 75 65 chr9 26146320 26146521 -91716106 - MIR3 SINE MIR -5 203 1 1239 263 147 18 chr9 26149842 26150393 -91712234 - L1ME2 LINE L1 -49 6115 5494 2113 92 0 14 chr9 26150560 26150884 -91711743 + AluY SINE Alu 1 320 0 180 77 0 0 chr9 26150921 26150947 -91711680 + (CAA)n Simple_repeat Simple_repeat 3 28 0 446 304 131 13 chr9 26151280 26151758 -91710869 - L1ME LINE L1 -440 5705 5164 310 346 123 35 chr9 26152040 26152526 -91710101 - L1ME LINE L1 -5050 1069 541 21 0 0 0 chr9 26152775 26152796 -91709831 + AT_rich Low_complexity Low_complexity 1 21 0 5609 193 26 26 chr9 26152895 26154547 -91708080 - L1MC1 LINE L1 -1 6332 4678 443 48 16 0 chr9 26154555 26154617 -91708010 - MADE1 DNA Mariner 0 80 18 232 324 0 0 chr9 26154837 26154908 -91707719 + CT-rich Low_complexity Low_complexity 2 72 0 2125 125 0 6 chr9 26154908 26155220 -91707407 - AluSq SINE Alu -2 311 2 193 291 36 0 chr9 26155235 26155290 -91707337 - L2 LINE L2 -35 3278 3222 617 354 62 24 chr9 26155446 26155785 -91706842 - L2 LINE L2 -157 3156 2805 2043 114 10 0 chr9 26157523 26157812 -91704815 + AluSg SINE Alu 1 292 -18 581 274 98 35 chr9 26157892 26158210 -91704417 - MLT1H LTR MaLR -150 399 62 2014 94 0 0 chr9 26158500 26158766 -91703861 - AluSc SINE Alu -43 266 1 330 211 0 0 chr9 26159321 26159435 -91703192 + (TA)n Simple_repeat Simple_repeat 1 114 0 2257 255 98 31 chr9 26161823 26163323 -91699304 - L1ME1 LINE L1 -170 5996 4405 238 274 95 0 chr9 26163819 26163903 -91698724 + MIR3 SINE MIR 72 163 -45 180 330 102 11 chr9 26164912 26165000 -91697627 - L2 LINE L2 0 3313 3218 212 226 32 0 chr9 26166142 26166204 -91696423 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 2041 179 60 3 chr9 26166214 26166600 -91696027 - MLT2C2 LTR ERVL -56 408 1 856 242 78 55 chr9 26167032 26167417 -91695210 + MER66A LTR ERV1 45 438 -40 239 271 59 0 chr9 26167509 26167594 -91695033 - MIR SINE MIR -30 232 143 23 92 0 0 chr9 26168335 26168400 -91694227 + AT_rich Low_complexity Low_complexity 1 65 0 7265 45 0 3 chr9 26168431 26169506 -91693121 - L1PA5 LINE L1 -1 6153 5082 4627 47 5 0 chr9 26169511 26170089 -91692538 - L1PA5 LINE L1 -1171 4975 4395 21924 64 4 0 chr9 26170090 26172970 -91689657 + L1P LINE L1 690 3580 -2566 500 68 0 0 chr9 26173537 26173610 -91689017 + L1PA5 LINE L1 5981 6053 -101 29 47 0 0 chr9 26173616 26173659 -91688968 + AT_rich Low_complexity Low_complexity 1 43 0 274 301 54 0 chr9 26173980 26174073 -91688554 - MIR SINE MIR -6 256 159 226 326 94 44 chr9 26174334 26174515 -91688112 + MIR SINE MIR 65 254 -8 226 415 47 9 chr9 26174952 26175058 -91687569 + MIR SINE MIR 20 129 -133 499 287 115 52 chr9 26175360 26175550 -91687077 - L1ME3A LINE L1 -281 5889 5712 1912 130 36 0 chr9 26175550 26175861 -91686766 + AluSx SINE Alu 1 321 0 499 287 115 52 chr9 26175861 26176191 -91686436 - L1ME3A LINE L1 -458 5712 5335 356 301 54 0 chr9 26176264 26176450 -91686177 - L1ME3A LINE L1 -928 5218 5023 311 311 56 80 chr9 26176568 26176819 -91685808 + LTR16B LTR ERVL 208 452 -12 208 294 52 58 chr9 26177060 26177215 -91685412 + MIR SINE MIR 64 216 -46 1956 138 0 0 chr9 26177339 26177622 -91685005 + AluSx SINE Alu 1 283 -29 246 62 0 0 chr9 26177622 26177654 -91684973 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 234 261 0 0 chr9 26177769 26177838 -91684789 + (TA)n Simple_repeat Simple_repeat 1 69 0 246 294 94 69 chr9 26178936 26179096 -91683531 + MER103 DNA DNA 2 165 -1 1806 201 75 2 chr9 26179457 26179856 -91682771 - MSTA LTR MaLR 0 428 1 524 286 142 33 chr9 26179858 26180487 -91682140 - L1ME3A LINE L1 -1133 5013 4317 22 0 0 0 chr9 26180549 26180571 -91682056 + AT_rich Low_complexity Low_complexity 1 22 0 31 82 0 0 chr9 26180759 26180832 -91681795 + AT_rich Low_complexity Low_complexity 1 73 0 296 62 0 21 chr9 26180904 26180952 -91681675 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 7053 11 0 1 chr9 26180952 26181754 -91680873 - L1PA2 LINE L1 -16 6139 5339 234 0 0 0 chr9 26182406 26182432 -91680195 + (CAA)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr9 26182445 26182470 -91680157 + (CA)n Simple_repeat Simple_repeat 2 26 0 1734 189 25 0 chr9 26183924 26184289 -91678338 - L1MB1 LINE L1 -1 6167 5794 186 43 0 0 chr9 26184289 26184312 -91678315 + (TG)n Simple_repeat Simple_repeat 2 24 0 5752 210 24 8 chr9 26184413 26186158 -91676469 - L1MB1 LINE L1 -382 5786 4011 3382 186 6 27 chr9 26186166 26186899 -91675728 - L1MC1 LINE L1 -5 6608 5892 330 169 0 0 chr9 26186901 26186966 -91675661 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 2445 198 9 60 chr9 26186968 26187958 -91674669 - L1MC1 LINE L1 -739 5874 4948 3969 193 43 16 chr9 26188003 26190048 -91672579 - L1MC1 LINE L1 -3401 3025 826 712 270 43 9 chr9 26190065 26190276 -91672351 - L1MC1 LINE L1 -6136 471 254 579 336 70 32 chr9 26190746 26191091 -91671536 + LTR16C LTR ERVL 85 442 -49 1203 236 20 55 chr9 26191204 26191548 -91671079 - MLT2B1 LTR ERVL -186 334 3 393 39 0 0 chr9 26191820 26191871 -91670756 + (TG)n Simple_repeat Simple_repeat 1 51 0 25 0 0 0 chr9 26192093 26192118 -91670509 + AT_rich Low_complexity Low_complexity 1 25 0 381 263 30 0 chr9 26192855 26192954 -91669673 + MER94 DNA DNA 1 102 -32 309 313 129 0 chr9 26195076 26195223 -91667404 + MER5B DNA MER1_type 7 172 -6 27 29 0 0 chr9 26195757 26195791 -91666836 + AT_rich Low_complexity Low_complexity 1 34 0 1623 70 0 0 chr9 26195797 26196010 -91666617 - L1PA4 LINE L1 -11 6144 5932 22 0 0 0 chr9 26196295 26196317 -91666310 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 26197167 26197196 -91665431 + AT_rich Low_complexity Low_complexity 1 29 0 185 375 0 0 chr9 26197505 26197561 -91665066 - MIR SINE MIR -148 114 59 21 57 0 0 chr9 26197729 26197764 -91664863 + AT_rich Low_complexity Low_complexity 1 35 0 325 262 47 19 chr9 26198111 26198218 -91664409 + MIR SINE MIR 75 184 -78 208 321 47 65 chr9 26198452 26198667 -91663960 - L3 LINE CR1 -12 1565 1355 310 272 206 46 chr9 26198770 26199208 -91663419 - L1ME4a LINE L1 -92 6029 5522 23 33 0 0 chr9 26199312 26199342 -91663285 + AT_rich Low_complexity Low_complexity 1 30 0 189 403 16 16 chr9 26199355 26199484 -91663143 - MIR3 SINE MIR -52 156 28 1620 132 21 4 chr9 26199772 26200015 -91662612 + AluSx SINE Alu 37 283 -29 198 0 0 0 chr9 26200015 26200037 -91662590 + (CAAT)n Simple_repeat Simple_repeat 1 22 0 29819 116 21 59 chr9 26200075 26205804 -91656823 + L1PA7 LINE L1 12 5456 -698 2227 77 0 20 chr9 26205804 26206103 -91656524 + AluY SINE Alu 1 293 -18 29819 116 21 59 chr9 26206103 26206764 -91655863 + L1PA7 LINE L1 5456 6141 -13 196 357 121 6 chr9 26206962 26207119 -91655508 - MIR SINE MIR -11 251 77 181 231 0 0 chr9 26207330 26207369 -91655258 - L2 LINE L2 -4 3309 3271 1033 170 85 0 chr9 26207667 26207855 -91654772 - MER2 DNA MER2_type -140 205 2 216 285 44 7 chr9 26207864 26208001 -91654626 + (TATATG)n Simple_repeat Simple_repeat 2 143 0 * 289 233 34 40 chr9 26207906 26208067 -91654560 + (TA)n Simple_repeat Simple_repeat 2 163 -13 2108 126 0 0 chr9 26208067 26208361 -91654266 + AluSx SINE Alu 1 294 -18 289 233 34 40 chr9 26208361 26208375 -91654252 + (TA)n Simple_repeat Simple_repeat 163 176 0 204 314 118 20 chr9 26208762 26208864 -91653763 - L2 LINE L2 -982 2332 2221 3465 123 65 125 chr9 26208978 26209159 -91653468 + LTR1 LTR ERV1 1 191 -594 2272 86 3 0 chr9 26209159 26209451 -91653176 + AluSc SINE Alu 1 293 -16 3465 123 65 125 chr9 26209451 26210104 -91652523 + LTR1 LTR ERV1 191 785 0 280 340 0 30 chr9 26210355 26210455 -91652172 + MIR SINE MIR 51 147 -115 1798 153 14 17 chr9 26210966 26211260 -91651367 - AluSx SINE Alu -17 295 3 192 259 17 35 chr9 26212767 26212825 -91649802 + MIR SINE MIR 92 148 -60 1348 267 50 2 chr9 26213974 26214393 -91648234 - L1ME3A LINE L1 -235 5935 5497 199 357 0 0 chr9 26216043 26216113 -91646514 + L3 LINE CR1 1317 1386 -191 24 85 0 0 chr9 26216287 26216346 -91646281 + AT_rich Low_complexity Low_complexity 1 59 0 186 43 0 0 chr9 26216464 26216487 -91646140 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 410 225 60 18 chr9 26216692 26216850 -91645777 + MIR SINE MIR 30 192 -62 323 274 0 0 chr9 26216879 26216952 -91645675 - LTR67 LTR ERVL -79 478 406 2744 171 21 6 chr9 26217754 26218227 -91644400 - MER66B LTR ERV1 0 486 7 1390 158 38 19 chr9 26218338 26218603 -91644024 - LTR23 LTR ERV1 -1 436 167 2531 175 130 16 chr9 26218656 26219209 -91643418 - LTR51 LTR ERV1 -53 618 3 290 115 19 0 chr9 26219210 26219262 -91643365 + (TG)n Simple_repeat Simple_repeat 2 54 0 215 283 67 0 chr9 26219290 26219350 -91643277 + L2 LINE L2 3200 3263 -50 195 414 11 0 chr9 26219457 26219544 -91643083 - L2 LINE L2 -219 3053 2966 2676 152 47 12 chr9 26219591 26219737 -91642890 + MER84 LTR ERV1 1 140 -367 258 81 0 0 chr9 26219737 26219774 -91642853 + (TA)n Simple_repeat Simple_repeat 2 38 0 2676 152 47 12 chr9 26219774 26220114 -91642513 + MER84 LTR ERV1 140 504 -3 1314 147 17 37 chr9 26220420 26220875 -91641752 + LTR54 LTR ERV1 1 505 -5 233 0 62 0 chr9 26220967 26220999 -91641628 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1982 120 0 7 chr9 26221002 26221285 -91641342 - AluSx SINE Alu -31 281 1 216 0 0 0 chr9 26221748 26221772 -91640855 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 294 325 45 6 chr9 26222137 26222294 -91640333 + MIR SINE MIR 100 262 0 293 348 141 7 chr9 26223418 26223553 -91639074 - MER91A DNA MER1_type -22 174 22 2024 217 89 6 chr9 26224307 26224781 -91637846 - MER67D LTR ERV1 -1 513 1 505 229 82 12 chr9 26225334 26225504 -91637123 - L1MC4 LINE L1 -380 7662 7481 626 259 15 71 chr9 26225508 26225705 -91636922 + MER58A DNA MER1_type 39 224 0 236 258 194 16 chr9 26225754 26225878 -91636749 + MIR SINE MIR 79 224 -38 253 298 33 25 chr9 26226091 26226212 -91636415 + MLT1L LTR MaLR 44 165 -450 1784 252 72 74 chr9 26226631 26227425 -91635202 - L1ME3A LINE L1 -5 6165 5354 1332 205 89 0 chr9 26227425 26227683 -91634944 - AluJo SINE Alu -31 281 1 1784 252 72 74 chr9 26227683 26228080 -91634547 - L1ME3A LINE L1 -816 5354 4958 1125 224 133 23 chr9 26229263 26229655 -91632972 + MER63B DNA MER1_type 1 435 -1 514 282 100 6 chr9 26229768 26229938 -91632689 - MER5A DNA MER1_type 0 189 4 10382 23 1 0 chr9 26229938 26231399 -91631228 - L1PA3 LINE L1 -836 5310 3847 6996 31 1 0 chr9 26231399 26232256 -91630371 + L1PA3 LINE L1 5313 6170 0 332 318 11 45 chr9 26232541 26232720 -91629907 + CT-rich Low_complexity Low_complexity 5 177 0 31 26 0 0 chr9 26232946 26232984 -91629643 + AT_rich Low_complexity Low_complexity 1 38 0 3935 195 10 16 chr9 26233004 26234028 -91628599 + L1P5 LINE L1 4440 5451 -700 22 0 0 0 chr9 26234151 26234173 -91628454 + AT_rich Low_complexity Low_complexity 1 22 0 2580 211 34 8 chr9 26235641 26236165 -91626462 + MLT2B3 LTR ERVL 1 395 -19 213 156 0 22 chr9 26236167 26236212 -91626415 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 250 93 23 23 chr9 26236212 26236255 -91626372 + MLT2B3 LTR ERVL 509 551 -3 2584 24 0 0 chr9 26236288 26236582 -91626045 + AluY SINE Alu 1 294 -17 180 330 82 52 chr9 26237191 26237288 -91625339 - MIR3 SINE MIR -108 100 1 370 204 19 0 chr9 26237632 26237735 -91624892 + (TA)n Simple_repeat Simple_repeat 2 106 0 440 236 55 18 chr9 26237902 26238012 -91624615 - L2 LINE L2 0 3313 3200 24 32 0 0 chr9 26238387 26238418 -91624209 + AT_rich Low_complexity Low_complexity 1 31 0 187 279 33 33 chr9 26238534 26238595 -91624032 + L2 LINE L2 3211 3271 -1 234 365 24 2 chr9 26238645 26238797 -91623830 + MIR SINE MIR 15 172 -36 816 242 146 39 chr9 26239301 26239631 -91622996 - MLT1A1 LTR MaLR 0 365 1 852 316 93 23 chr9 26240162 26240592 -91622035 - LTR16B LTR ERVL -2 462 3 331 281 99 28 chr9 26240746 26240999 -91621628 - L1MC4a LINE L1 -1926 5882 5612 3162 194 64 63 chr9 26241006 26241876 -91620751 - L1MD2 LINE L1 -2 6357 5487 612 209 38 43 chr9 26241882 26242092 -91620535 - L1MD2 LINE L1 -1191 4955 4747 594 274 95 12 chr9 26242106 26242391 -91620236 - L1MC4a LINE L1 -515 5606 5292 22 0 0 0 chr9 26242534 26242556 -91620071 + AT_rich Low_complexity Low_complexity 1 22 0 517 284 14 0 chr9 26242595 26242736 -91619891 + MIR SINE MIR 96 238 -24 34 0 0 0 chr9 26242851 26242885 -91619742 + AT_rich Low_complexity Low_complexity 1 34 0 1508 251 209 22 chr9 26242927 26243478 -91619149 + MLT1E1 LTR MaLR 1 654 0 24 85 0 0 chr9 26244140 26244199 -91618428 + AT_rich Low_complexity Low_complexity 1 59 0 197 178 22 0 chr9 26244362 26244407 -91618220 + GA-rich Low_complexity Low_complexity 3 48 0 24 0 0 0 chr9 26244747 26244771 -91617856 + AT_rich Low_complexity Low_complexity 1 24 0 26 19 0 58 chr9 26245167 26245219 -91617408 + AT_rich Low_complexity Low_complexity 1 49 0 216 135 0 0 chr9 26248344 26248381 -91614246 + (GA)n Simple_repeat Simple_repeat 1 37 0 1730 169 0 16 chr9 26248741 26249048 -91613579 + AluJo SINE Alu 11 312 0 327 104 0 0 chr9 26249054 26249102 -91613525 + (GGAA)n Simple_repeat Simple_repeat 3 50 0 34 65 0 0 chr9 26249356 26249418 -91613209 + AT_rich Low_complexity Low_complexity 1 62 0 392 298 8 8 chr9 26251099 26251230 -91611397 - MIR3 SINE MIR 0 208 78 1451 163 8 4 chr9 26252099 26252344 -91610283 - AluJb SINE Alu 0 312 67 247 368 8 24 chr9 26252488 26252613 -91610014 + MLT2E LTR ERVL 32 154 -474 429 20 0 0 chr9 26252859 26252909 -91609718 + (TG)n Simple_repeat Simple_repeat 2 51 0 363 269 167 54 chr9 26252912 26253247 -91609380 - L1ME4a LINE L1 -224 5897 5525 415 226 155 32 chr9 26255018 26255173 -91607454 - MER45A DNA AcHobo 0 178 5 711 216 67 36 chr9 26255371 26255565 -91607062 - MER20 DNA MER1_type 0 219 20 400 275 0 0 chr9 26255604 26255695 -91606932 - L1MC5 LINE L1 -48 7913 7823 188 300 0 0 chr9 26255799 26255849 -91606778 - MER5A DNA MER1_type -77 112 63 200 206 55 68 chr9 26258213 26258286 -91604341 - MIR SINE MIR -69 193 122 542 300 97 4 chr9 26258578 26258805 -91603822 + MLT1C LTR MaLR 216 463 -4 2471 216 22 51 chr9 26258806 26259477 -91603150 + MLT1C-int LTR MaLR 4 655 -716 406 256 0 0 chr9 26259540 26259626 -91603001 + MLT1C-int LTR MaLR 661 746 -625 26 0 0 0 chr9 26259637 26259663 -91602964 + AT_rich Low_complexity Low_complexity 1 26 0 2821 201 130 100 chr9 26259731 26260284 -91602343 - L1MC3 LINE L1 -9 7845 7310 237 326 12 0 chr9 26260284 26260370 -91602257 - MLT1F1 LTR MaLR -436 131 45 2821 201 130 100 chr9 26260370 26260860 -91601767 - L1MC3 LINE L1 -544 7310 6683 1425 175 35 132 chr9 26260860 26261254 -91601373 - MLT1B LTR MaLR 0 390 35 1150 279 65 20 chr9 26261269 26261610 -91601017 - ERVL LTR ERVL -3990 1774 1419 1727 223 41 7 chr9 26261615 26262401 -91600226 - L1MC3 LINE L1 -743 5472 4899 * 2527 271 82 33 chr9 26262398 26264097 -91598530 - L1MC3 LINE L1 -2717 3498 1753 811 271 50 14 chr9 26264126 26264484 -91598143 - MER69 DNA AcHobo -293 2233 1863 1084 304 87 24 chr9 26264506 26265056 -91597571 - MER69 DNA AcHobo -402 824 240 1652 160 24 17 chr9 26265101 26265389 -91597238 + AluJo SINE Alu 12 301 -11 444 191 0 0 chr9 26265472 26265566 -91597061 + (TA)n Simple_repeat Simple_repeat 2 95 0 400 282 8 17 chr9 26265566 26265683 -91596944 - MER69 DNA AcHobo -2410 116 1 232 89 22 22 chr9 26265891 26265936 -91596691 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 283 267 38 9 chr9 26266169 26266274 -91596353 - LTR37B LTR ERV1 -359 109 2 2495 46 10 0 chr9 26266390 26266692 -91595935 - AluY SINE Alu -6 305 1 1543 163 13 64 chr9 26266971 26267284 -91595343 + AluJb SINE Alu 9 305 -7 22 70 0 0 chr9 26267369 26267412 -91595215 + AT_rich Low_complexity Low_complexity 1 43 0 331 238 50 40 chr9 26269598 26269699 -91592928 - MIR SINE MIR -64 198 97 183 80 0 0 chr9 26270152 26270177 -91592450 + (CA)n Simple_repeat Simple_repeat 2 26 0 321 363 52 15 chr9 26270190 26270325 -91592302 + L2 LINE L2 3133 3272 0 180 125 0 0 chr9 26271274 26271306 -91591321 + (TA)n Simple_repeat Simple_repeat 2 33 0 2190 129 0 3 chr9 26271431 26271741 -91590886 + AluSx SINE Alu 3 311 -1 1525 201 28 12 chr9 26271983 26272302 -91590325 - MER44D DNA MER2_type -3 606 13 1961 171 19 5 chr9 26272407 26272781 -91589846 + L1MC1 LINE L1 5645 6023 -310 1432 181 15 0 chr9 26272877 26273147 -91589480 + L1MC1 LINE L1 6058 6331 -2 219 204 0 20 chr9 26274532 26274581 -91588046 + (TA)n Simple_repeat Simple_repeat 1 48 0 1003 225 78 30 chr9 26275041 26275409 -91587218 - MSTC LTR MaLR 0 428 3 5087 131 18 20 chr9 26277844 26279196 -91583431 + L1PB2 LINE L1 4796 6151 0 8058 112 40 17 chr9 26279843 26281098 -91581529 - HSMAR1 DNA Mariner 0 1287 4 197 311 0 0 chr9 26281100 26281161 -91581466 - L2 LINE L2 -1049 2265 2205 2259 155 32 32 chr9 26281837 26282269 -91580358 + Tigger2a DNA MER2_type 2 433 -1 315 0 0 0 chr9 26282270 26282305 -91580322 + (TG)n Simple_repeat Simple_repeat 2 36 0 1856 133 14 0 chr9 26282308 26282616 -91580011 - AluSx SINE Alu 0 312 1 24 67 0 0 chr9 26283019 26283064 -91579563 + AT_rich Low_complexity Low_complexity 1 45 0 328 227 39 31 chr9 26283258 26283386 -91579241 + L1MCa LINE L1 1943 2071 -4355 336 354 77 48 chr9 26283525 26283901 -91578726 + L2 LINE L2 2924 3310 -3 26 30 0 0 chr9 26284434 26284467 -91578160 + AT_rich Low_complexity Low_complexity 1 33 0 1650 145 0 4 chr9 26284592 26284834 -91577793 - AluSg SINE Alu -15 295 55 323 227 0 53 chr9 26284937 26285012 -91577615 - L1 LINE L1 -2018 4128 4058 * 3985 206 41 23 chr9 26284999 26286002 -91576625 + L1MB1 LINE L1 4618 5663 -505 2183 99 3 13 chr9 26286002 26286343 -91576284 + AluSp SINE Alu 1 313 0 3985 206 41 23 chr9 26286343 26286850 -91575777 + L1MB1 LINE L1 5663 6159 -9 444 337 22 22 chr9 26286914 26287095 -91575532 + LTR16A LTR ERVL 263 443 -7 1288 315 131 27 chr9 26288244 26288901 -91573726 + L1MC3 LINE L1 1 725 -6134 2110 223 65 60 chr9 26288992 26290392 -91572235 + L1MC3 LINE L1 934 2453 -4504 1888 295 57 8 chr9 26290457 26291512 -91571115 + L1MC3 LINE L1 2776 3844 -3113 2449 227 67 28 chr9 26291811 26293199 -91569428 + L1MC3 LINE L1 5184 6633 -749 * 2744 208 49 92 chr9 26293194 26293897 -91568730 + L1MC3 LINE L1 6974 7706 -890 1370 242 46 3 chr9 26293897 26294244 -91568383 + MLT1A1 LTR MaLR 1 362 -3 369 0 0 0 chr9 26294244 26294285 -91568342 + (CA)n Simple_repeat Simple_repeat 2 42 0 363 44 0 0 chr9 26294284 26294329 -91568298 + (GA)n Simple_repeat Simple_repeat 2 46 0 2744 208 49 92 chr9 26294285 26294550 -91568077 + L1MC3 LINE L1 7704 7859 -737 309 89 0 0 chr9 26294551 26294596 -91568031 + (TG)n Simple_repeat Simple_repeat 2 46 0 206 279 15 15 chr9 26295851 26295919 -91566708 + L2 LINE L2 3245 3312 -1 231 357 36 30 chr9 26296311 26296479 -91566148 + MER20B DNA MER1_type 4 172 -611 25 31 0 0 chr9 26298182 26298214 -91564413 + AT_rich Low_complexity Low_complexity 1 32 0 182 304 89 30 chr9 26298325 26298460 -91564167 + MIR SINE MIR 120 262 0 188 377 0 0 chr9 26298746 26298815 -91563812 - L2 LINE L2 -7 3306 3238 543 329 43 10 chr9 26300069 26300276 -91562351 - MIR SINE MIR -2 260 47 235 286 18 0 chr9 26301736 26301792 -91560835 - L2 LINE L2 -8 3264 3208 330 270 9 26 chr9 26302910 26303025 -91559602 + Charlie8 DNA MER1_type 77 189 -2228 243 330 36 0 chr9 26303091 26303203 -91559424 + Charlie8 DNA MER1_type 298 413 -2004 2056 168 34 50 chr9 26303535 26303976 -91558651 - Tigger2a DNA MER2_type 0 434 1 5448 195 29 16 chr9 26304935 26306755 -91555872 - L1PA13 LINE L1 -3536 3261 1406 4613 227 80 11 chr9 26306789 26307848 -91554779 - L1PA13 LINE L1 -5573 1214 83 208 217 0 0 chr9 26308231 26308277 -91554350 + (CA)n Simple_repeat Simple_repeat 1 46 0 1346 210 24 15 chr9 26309787 26310116 -91552511 - L1 LINE L1 -1534 4612 4281 409 151 0 0 chr9 26310221 26310294 -91552333 - AluS SINE Alu -228 73 1 2326 92 0 3 chr9 26311186 26311491 -91551136 - AluSx SINE Alu -8 304 1 21 36 0 0 chr9 26312411 26312439 -91550188 + AT_rich Low_complexity Low_complexity 1 28 0 351 0 0 0 chr9 26312622 26312661 -91549966 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr9 26314437 26314460 -91548167 + AT_rich Low_complexity Low_complexity 1 23 0 273 29 0 0 chr9 26314731 26314765 -91547862 + (CA)n Simple_repeat Simple_repeat 1 34 0 333 190 0 0 chr9 26315090 26315148 -91547479 - L1MC2 LINE L1 -23 6321 6264 952 243 106 58 chr9 26315148 26315526 -91547101 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr9 26315749 26315771 -91546856 + AT_rich Low_complexity Low_complexity 1 22 0 289 289 26 18 chr9 26315787 26315901 -91546726 - L1MC4 LINE L1 -601 7441 7327 1867 223 50 72 chr9 26316713 26317292 -91545335 - MER74B LTR ERVL -2 620 55 250 281 0 31 chr9 26317821 26317885 -91544742 - MLT2E LTR ERVL -506 122 61 311 339 18 0 chr9 26318146 26318255 -91544372 + MIR SINE MIR 36 146 -62 204 293 0 40 chr9 26321926 26322001 -91540626 + GA-rich Low_complexity Low_complexity 1 72 0 196 364 133 7 chr9 26323064 26323224 -91539403 + MIR SINE MIR 37 217 -45 190 235 0 20 chr9 26323299 26323350 -91539277 + L2 LINE L2 3219 3268 -4 268 159 0 0 chr9 26323363 26323407 -91539220 - LTR16C LTR ERVL 0 491 448 1812 55 4 0 chr9 26324098 26324355 -91538272 + L1PA4 LINE L1 5804 6061 -111 327 67 0 0 chr9 26324325 26324370 -91538257 + L1PA3 LINE L1 6106 6150 -5 * 3898 182 90 17 chr9 26325210 26326220 -91536407 - L1PBa LINE L1 -3038 3824 2683 3740 212 11 10 chr9 26326220 26327027 -91535600 + L1 LINE L1 3355 4162 -1984 3697 123 9 6 chr9 26327029 26327772 -91534855 + L1P5 LINE L1 5030 5771 -380 342 0 0 0 chr9 26327779 26327817 -91534810 + (TA)n Simple_repeat Simple_repeat 2 39 0 20607 141 32 30 chr9 26327928 26331779 -91530848 - L1P3 LINE L1 -1501 4960 1104 1548 113 0 4 chr9 26331779 26332019 -91530608 + L1P LINE L1 3789 4027 -2119 6626 151 24 16 chr9 26332027 26333159 -91529468 - L1P3 LINE L1 -5315 1146 6 2465 68 0 0 chr9 26333773 26334084 -91528543 - AluY SINE Alu 0 311 1 1835 167 0 0 chr9 26334278 26334554 -91528073 - AluSg SINE Alu -29 281 6 580 365 16 4 chr9 26334979 26335223 -91527404 + MIR SINE MIR 16 262 0 23 54 0 0 chr9 26335458 26335495 -91527132 + AT_rich Low_complexity Low_complexity 1 37 0 216 345 86 35 chr9 26335970 26336086 -91526541 - L2 LINE L2 -8 3305 3184 499 339 20 16 chr9 26337646 26337891 -91524736 + L1MEc LINE L1 173 418 -5978 711 249 61 42 chr9 26338238 26338551 -91524076 + L1MB7 LINE L1 3972 4290 -1856 * 969 266 118 65 chr9 26338544 26339194 -91523433 + L1MB7 LINE L1 5490 6174 -10 414 305 32 21 chr9 26339225 26339415 -91523212 + L1ME1 LINE L1 5971 6162 -4 503 275 67 11 chr9 26339720 26339949 -91522678 + L1MEc LINE L1 1023 1343 -4862 4373 246 88 29 chr9 26340230 26342190 -91520437 + L1MA7 LINE L1 3387 5481 -743 1520 156 33 47 chr9 26342190 26342540 -91520087 + L1MA7 LINE L1 5933 6287 -4 195 100 0 0 chr9 26342631 26342661 -91519966 + (CAA)n Simple_repeat Simple_repeat 2 31 0 777 296 37 0 chr9 26342814 26342987 -91519640 - LTR16C LTR ERVL -79 412 228 1676 174 135 26 chr9 26342987 26343373 -91519254 + MSTA LTR MaLR 1 428 0 777 296 37 0 chr9 26343373 26343415 -91519212 - LTR16C LTR ERVL -263 228 189 940 306 49 43 chr9 26343489 26343937 -91518690 - L1MDb LINE L1 -5887 522 69 1985 144 123 0 chr9 26343937 26344318 -91518309 - MSTA LTR MaLR 0 428 1 940 306 49 43 chr9 26344318 26344382 -91518245 - L1MDb LINE L1 -6340 69 7 22 0 0 0 chr9 26345185 26345207 -91517420 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr9 26345469 26345499 -91517128 + (CA)n Simple_repeat Simple_repeat 1 30 0 29 84 0 0 chr9 26345499 26345570 -91517057 + AT_rich Low_complexity Low_complexity 1 71 0 231 326 58 55 chr9 26345839 26346130 -91516497 + MLT1H LTR MaLR 118 409 -140 255 244 67 0 chr9 26346266 26346356 -91516271 - L1MC4 LINE L1 -1339 6703 6608 41506 57 7 2 chr9 26346809 26352939 -91509688 - L1PA4 LINE L1 0 6155 2 1036 264 100 11 chr9 26353056 26353633 -91508994 + L1ME1 LINE L1 5161 5788 -571 417 224 8 8 chr9 26353760 26353885 -91508742 + L1ME1 LINE L1 5785 5909 -257 190 341 101 47 chr9 26354093 26354222 -91508405 + MIR3 SINE MIR 10 145 -63 25 31 0 0 chr9 26354375 26354407 -91508220 + AT_rich Low_complexity Low_complexity 1 32 0 220 211 0 0 chr9 26354733 26354771 -91507856 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 227 100 0 0 chr9 26354771 26354821 -91507806 + LTR66 LTR ERVL 398 447 -163 224 344 179 9 chr9 26356275 26356487 -91506140 + MIR SINE MIR 3 250 -12 180 152 0 0 chr9 26357593 26357626 -91505001 + (TG)n Simple_repeat Simple_repeat 2 34 0 2148 146 30 28 chr9 26358241 26358603 -91504024 - THE1B LTR MaLR -1 363 1 2409 77 0 10 chr9 26358824 26359137 -91503490 - AluY SINE Alu -1 310 1 24 53 0 0 chr9 26361376 26361414 -91501213 + AT_rich Low_complexity Low_complexity 1 38 0 199 369 45 27 chr9 26361447 26361558 -91501069 - L2 LINE L2 0 3313 3201 21 0 0 0 chr9 26361686 26361707 -91500920 + AT_rich Low_complexity Low_complexity 1 21 0 344 216 0 95 chr9 26361803 26361919 -91500708 + L1MC4 LINE L1 6604 6708 -1334 213 39 0 0 chr9 26361921 26361947 -91500680 + (TA)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr9 26362110 26362133 -91500494 + AT_rich Low_complexity Low_complexity 1 23 0 1984 151 5 78 chr9 26362801 26363186 -91499441 - THE1B LTR MaLR 0 364 8 22 35 0 0 chr9 26363205 26363234 -91499393 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr9 26364523 26364551 -91498076 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr9 26364958 26364982 -91497645 + (TA)n Simple_repeat Simple_repeat 2 25 0 11739 97 8 2 chr9 26364989 26367440 -91495187 - L1PA7 LINE L1 -5 6464 4003 8009 115 9 3 chr9 26367440 26368195 -91494432 - L1PA7 LINE L1 -5285 1176 410 252 0 0 0 chr9 26368195 26368223 -91494404 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 8009 115 9 3 chr9 26368223 26368634 -91493993 - L1PA7 LINE L1 -6051 410 3 2555 233 74 64 chr9 26368830 26369517 -91493110 - L1MD2 LINE L1 -10 6349 5670 5902 88 19 25 chr9 26369517 26370925 -91491702 - L1PA13 LINE L1 0 6163 4780 378 0 0 0 chr9 26370925 26370967 -91491660 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5902 88 19 25 chr9 26370967 26371348 -91491279 - L1PA13 LINE L1 -1383 4780 4398 2555 233 74 64 chr9 26371348 26372471 -91490156 - L1MD2 LINE L1 -689 5670 4522 1384 161 88 101 chr9 26372479 26372913 -91489714 - MSTA LTR MaLR 0 428 1 515 317 155 34 chr9 26373026 26373255 -91489372 - L1M4 LINE L1 -1300 4846 4646 2347 81 0 7 chr9 26373255 26373552 -91489075 - AluSc SINE Alu -14 295 1 515 317 155 34 chr9 26373552 26373845 -91488782 - L1M4 LINE L1 -1500 4646 4261 413 314 94 13 chr9 26374026 26374185 -91488442 - MIR SINE MIR -88 174 3 2202 36 0 0 chr9 26374841 26375090 -91487537 - AluY SINE Alu -13 298 50 438 280 168 0 chr9 26375112 26375255 -91487372 - MIR SINE MIR -68 194 28 182 307 93 0 chr9 26375791 26375866 -91486761 - MIR SINE MIR -95 113 32 523 200 9 17 chr9 26376043 26376158 -91486469 + MLT2B2 LTR ERVL 1 114 -401 302 264 36 45 chr9 26376166 26376276 -91486351 - L1MC4 LINE L1 -1339 6703 6595 562 132 41 11 chr9 26376282 26376824 -91485803 + (TA)n Simple_repeat Simple_repeat 1 558 0 607 127 28 18 chr9 26376837 26377123 -91485504 + (TA)n Simple_repeat Simple_repeat 1 289 0 241 82 82 61 chr9 26377125 26377174 -91485453 + MLT2B1 LTR ERVL 464 518 -2 23 0 0 0 chr9 26377180 26377203 -91485424 + AT_rich Low_complexity Low_complexity 1 23 0 333 359 106 20 chr9 26377277 26377625 -91485002 - L2 LINE L2 -782 2532 2155 42362 36 25 3 chr9 26377794 26383806 -91478821 - L1PA3 LINE L1 -11 6144 3 310 318 178 33 chr9 26384266 26384480 -91478147 - MIR SINE MIR -14 248 4 21 0 0 0 chr9 26384629 26384650 -91477977 + AT_rich Low_complexity Low_complexity 1 21 0 392 279 43 50 chr9 26385421 26385561 -91477066 + MIR SINE MIR 58 196 -66 1308 215 55 7 chr9 26385570 26385742 -91476885 - AluJo SINE Alu -5 307 114 569 33 43 0 chr9 26385742 26385834 -91476793 + (TA)n Simple_repeat Simple_repeat 2 97 0 1308 215 55 7 chr9 26385834 26385954 -91476673 - AluJo SINE Alu -198 114 1 314 304 31 12 chr9 26386438 26386599 -91476028 + L1MC3 LINE L1 6697 6860 -925 1014 279 43 3 chr9 26386607 26386955 -91475672 + MLT1A1 LTR MaLR 1 362 -3 348 24 0 0 chr9 26386955 26386996 -91475631 + (CA)n Simple_repeat Simple_repeat 2 42 0 * 363 44 0 0 chr9 26386995 26387040 -91475587 + (GA)n Simple_repeat Simple_repeat 2 46 0 668 188 91 0 chr9 26387107 26387261 -91475366 + L1MC3 LINE L1 6881 7048 -737 309 89 0 0 chr9 26387262 26387307 -91475320 + (TG)n Simple_repeat Simple_repeat 2 46 0 399 41 0 0 chr9 26387819 26387868 -91474759 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 308 157 0 0 chr9 26388024 26388075 -91474552 + MER5A DNA MER1_type 16 66 -123 369 0 0 0 chr9 26388309 26388350 -91474277 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 233 233 11 0 chr9 26389012 26389102 -91473525 + (TA)n Simple_repeat Simple_repeat 2 92 0 304 283 0 30 chr9 26389102 26389201 -91473426 - L1MC4 LINE L1 -1333 6709 6614 492 198 9 0 chr9 26389324 26389430 -91473197 - L1MA10 LINE L1 -2 6332 6226 6576 74 8 4 chr9 26389916 26391430 -91471197 - L1PA8 LINE L1 -2 6170 4655 2040 280 63 34 chr9 26441472 26441814 -91420813 + L1M4 LINE L1 2997 3328 -2818 618 109 0 0 chr9 26441814 26441906 -91420721 + (TA)n Simple_repeat Simple_repeat 2 93 0 2040 280 63 34 chr9 26441906 26442306 -91420321 + L1M4 LINE L1 3328 3715 -2431 2248 97 0 3 chr9 26442306 26442614 -91420013 - AluSx SINE Alu -5 307 1 2040 280 63 34 chr9 26442614 26443101 -91419526 + L1M4 LINE L1 3715 4360 -1786 342 243 136 24 chr9 26443842 26444011 -91418616 - LTR41 LTR ERVL -585 188 1 357 248 41 7 chr9 26444376 26444521 -91418106 - L1MA10 LINE L1 -3 6331 6182 341 273 35 7 chr9 26444602 26444745 -91417882 - L1M4 LINE L1 -2791 3355 3209 * 3069 123 0 17 chr9 26444742 26445205 -91417422 - L1P LINE L1 -5691 455 1 599 250 69 39 chr9 26445228 26445588 -91417039 - L1M4 LINE L1 -2962 3184 2814 29 60 0 0 chr9 26445974 26446024 -91416603 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr9 26446571 26446592 -91416035 + AT_rich Low_complexity Low_complexity 1 21 0 414 176 0 0 chr9 26446593 26446661 -91415966 - MER8 DNA MER2_type -2 237 170 * 1900 171 93 20 chr9 26446658 26446913 -91415714 + Tigger2 DNA MER2_type 2280 2515 -203 207 0 0 0 chr9 26446913 26446936 -91415691 + (TA)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr9 26446935 26446956 -91415671 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 1900 171 93 20 chr9 26446936 26447109 -91415518 + Tigger2 DNA MER2_type 2515 2718 0 2623 10 0 0 chr9 26447442 26447736 -91414891 + AluYa5 SINE Alu 1 294 -17 260 257 171 0 chr9 26450437 26450507 -91412120 + L2 LINE L2 3229 3310 -3 374 226 43 43 chr9 26451331 26451446 -91411181 - MIR SINE MIR -10 252 138 278 265 0 15 chr9 26451932 26452000 -91410627 + MIR3 SINE MIR 111 177 -31 1819 158 67 12 chr9 26452275 26452604 -91410023 - MER7A DNA MER2_type 0 346 2 2316 67 14 0 chr9 26452961 26453258 -91409369 - AluY SINE Alu -10 301 1 541 299 98 5 chr9 26453541 26453735 -91408892 - MIR SINE MIR -10 252 41 306 291 152 6 chr9 26453974 26454132 -91408495 + MIR SINE MIR 82 262 0 237 33 0 0 chr9 26455055 26455085 -91407542 + (CA)n Simple_repeat Simple_repeat 2 31 0 27 29 0 0 chr9 26455099 26455133 -91407494 + AT_rich Low_complexity Low_complexity 1 34 0 502 290 86 56 chr9 26455264 26455927 -91406700 + L1MEd LINE L1 562 1244 -4875 428 315 56 23 chr9 26455955 26456171 -91406456 + L1MEd LINE L1 1344 1566 -4744 1245 198 4 4 chr9 26456826 26457064 -91405563 - THE1A LTR MaLR -117 238 1 10813 121 4 1 chr9 26457066 26458640 -91403987 - THE1B-int LTR MaLR -2 1578 1 1874 162 39 25 chr9 26458640 26458999 -91403628 - THE1B LTR MaLR 0 364 1 1973 124 39 7 chr9 26458999 26459306 -91403321 + MER57A-int LTR ERV1 6830 7146 -391 687 124 31 31 chr9 26459306 26459435 -91403192 + LTR54B LTR ERV1 3 131 -367 1294 93 205 5 chr9 26459436 26459651 -91402976 + MER57A-int LTR ERV1 7280 7537 0 1951 174 10 36 chr9 26459651 26460065 -91402562 + MER57A LTR ERV1 1 403 0 308 127 18 0 chr9 26460461 26460516 -91402111 + GA-rich Low_complexity Low_complexity 1 56 0 324 327 48 18 chr9 26460811 26460979 -91401648 + MIR SINE MIR 47 219 -43 22 0 0 0 chr9 26461190 26461212 -91401415 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 26462933 26462954 -91399673 + (A)n Simple_repeat Simple_repeat 1 21 0 556 151 0 32 chr9 26465976 26466161 -91396466 + (TA)n Simple_repeat Simple_repeat 1 179 0 302 244 0 12 chr9 26466189 26466271 -91396356 + (TA)n Simple_repeat Simple_repeat 1 81 0 26 30 0 0 chr9 26466449 26466482 -91396145 + AT_rich Low_complexity Low_complexity 1 33 0 276 43 128 0 chr9 26466485 26466532 -91396095 - L1MA4A LINE L1 -8 6295 6243 301 284 103 40 chr9 26466551 26466921 -91395706 - L1ME LINE L1 -503 5659 5267 21 36 0 0 chr9 26467002 26467030 -91395597 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr9 26468732 26468760 -91393867 + (CA)n Simple_repeat Simple_repeat 1 28 0 395 270 0 0 chr9 26470392 26470492 -91392135 + MER5A DNA MER1_type 10 109 -80 230 340 72 0 chr9 26471188 26471285 -91391342 + L2 LINE L2 3209 3312 -1 542 207 17 35 chr9 26471388 26471504 -91391123 + MER5B DNA MER1_type 64 177 -1 386 361 75 40 chr9 26471558 26471804 -91390823 + L3 LINE CR1 1134 1395 -182 1951 153 3 0 chr9 26471804 26472104 -91390523 + AluSx SINE Alu 2 302 -10 386 361 75 40 chr9 26472104 26472178 -91390449 + L3 LINE CR1 1395 1465 -112 1995 113 7 23 chr9 26472293 26472594 -91390033 + AluSx SINE Alu 1 296 -16 423 341 66 22 chr9 26472622 26472848 -91389779 - MIR SINE MIR 0 262 27 23 33 0 0 chr9 26472987 26473017 -91389610 + AT_rich Low_complexity Low_complexity 1 30 0 692 191 46 40 chr9 26473022 26473195 -91389432 + Tigger3(Golem) DNA MER2_type 102 275 -2754 180 285 133 44 chr9 26473651 26473809 -91388818 + MIR SINE MIR 81 252 -10 905 207 101 23 chr9 26474558 26474775 -91387852 + L1PB4 LINE L1 5919 6152 -4 214 333 78 0 chr9 26475802 26475892 -91386735 + MIR SINE MIR 56 152 -110 262 250 45 23 chr9 26476911 26477087 -91385540 + (TA)n Simple_repeat Simple_repeat 1 180 0 278 311 12 0 chr9 26477727 26477904 -91384723 + L1ME3A LINE L1 5296 5476 -694 1469 249 10 27 chr9 26477907 26478313 -91384314 + L1ME3A LINE L1 5655 6053 -117 191 86 0 29 chr9 26479256 26479291 -91383336 + (TA)n Simple_repeat Simple_repeat 1 34 0 28 29 0 0 chr9 26479330 26479365 -91383262 + AT_rich Low_complexity Low_complexity 1 35 0 236 322 70 43 chr9 26479454 26479569 -91383058 + L2 LINE L2 3153 3270 -2 1859 174 7 0 chr9 26479898 26480196 -91382431 + AluSx SINE Alu 1 300 -12 2218 234 44 127 chr9 26481125 26482317 -91380310 - MER52A LTR ERV1 0 1755 663 268 358 56 12 chr9 26483550 26483712 -91378915 - MIR SINE MIR -70 192 24 372 266 195 64 chr9 26483842 26484109 -91378518 - L1MDb LINE L1 -4392 2433 2132 8670 83 4 0 chr9 26484126 26486214 -91376413 - L1PA7 LINE L1 -2 6152 4059 2342 176 30 17 chr9 26486270 26486729 -91375898 + MLT1C LTR MaLR 1 465 -2 361 336 40 10 chr9 26486925 26487234 -91375393 - L1MDb LINE L1 -4869 1673 1429 1524 219 6 0 chr9 26487301 26487620 -91375007 - L1PB4 LINE L1 -12 6144 5824 1921 40 0 0 chr9 26487620 26487845 -91374782 - L1PA5 LINE L1 -434 5721 5497 3281 50 0 0 chr9 26487845 26488240 -91374387 + L1PA5 LINE L1 5748 6149 -5 267 129 0 30 chr9 26488252 26488322 -91374305 - L1PB4 LINE L1 -318 5838 5772 257 230 150 0 chr9 26488320 26488420 -91374207 - L1MDb LINE L1 -5130 1517 1403 * 2401 205 64 123 chr9 26488503 26488950 -91373677 - L1MB8 LINE L1 -66 6108 5636 1476 237 92 31 chr9 26488950 26489426 -91373201 - MLT1D LTR MaLR 0 505 1 2401 205 64 123 chr9 26489426 26489597 -91373030 - L1MB8 LINE L1 -538 5636 5456 268 108 0 0 chr9 26489597 26489634 -91372993 + U2 snRNA snRNA 1 37 -151 2401 205 64 123 chr9 26489634 26489708 -91372919 - L1MB8 LINE L1 -718 5456 5433 1995 123 3 0 chr9 26489708 26490000 -91372627 - AluY SINE Alu -18 293 1 2401 205 64 123 chr9 26490000 26490114 -91372513 - L1MB8 LINE L1 -741 5433 5314 2235 77 24 0 chr9 26490117 26490415 -91372212 - AluY SINE Alu -6 305 1 422 365 14 18 chr9 26490812 26491094 -91371533 - L1MDb LINE L1 -6076 749 469 320 301 80 45 chr9 26491524 26491723 -91370904 - L1ME2 LINE L1 -243 5921 5716 21 82 0 0 chr9 26492094 26492143 -91370484 + AT_rich Low_complexity Low_complexity 1 49 0 496 171 30 0 chr9 26492606 26492770 -91369857 + (TA)n Simple_repeat Simple_repeat 2 170 0 197 156 0 0 chr9 26494622 26494654 -91367973 - L2 LINE L2 -15 3298 3267 1925 155 0 16 chr9 26494698 26495014 -91367613 - AluSx SINE Alu -1 311 1 288 292 92 8 chr9 26495156 26495286 -91367341 - L2 LINE L2 0 3313 3173 22 0 0 0 chr9 26495895 26495917 -91366710 + AT_rich Low_complexity Low_complexity 1 22 0 367 119 15 15 chr9 26497517 26497533 -91365094 + MADE1 DNA Mariner 14 29 -51 2247 114 7 0 chr9 26497533 26497840 -91364787 - AluSc SINE Alu 0 309 1 367 119 15 15 chr9 26497840 26497890 -91364737 + MADE1 DNA Mariner 28 80 0 1393 211 3 37 chr9 26498326 26498648 -91363979 - AluJo SINE Alu -1 311 1 32 43 0 0 chr9 26498842 26498888 -91363739 + AT_rich Low_complexity Low_complexity 1 46 0 1289 222 10 33 chr9 26499846 26500152 -91362475 - AluJo SINE Alu -13 299 1 240 325 155 15 chr9 26500226 26500491 -91362136 - L3 LINE CR1 -27 1550 1249 183 254 0 0 chr9 26500792 26500855 -91361772 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 491 355 52 10 chr9 26500927 26501337 -91361290 + LTR16B LTR ERVL 3 460 -4 3008 164 6 0 chr9 26501443 26501938 -91360689 - L1PA16 LINE L1 -46 6120 5623 4972 83 3 0 chr9 26501938 26502591 -91360036 + HERV9 LTR ERV1 7745 8399 0 2612 143 82 185 chr9 26502591 26503630 -91358997 + pTR5 LTR ERV1 1 2438 0 6158 180 43 49 chr9 26503633 26504562 -91358065 + L1M4c LINE L1 873 1789 -4595 2774 162 12 12 chr9 26504562 26505057 -91357570 + LOR1a LTR ERV1 2 496 -1 6158 180 43 49 chr9 26505057 26505676 -91356951 + L1M4c LINE L1 1789 2411 -3973 716 161 7 7 chr9 26505677 26505820 -91356807 + L1MB3 LINE L1 6038 6180 -3 297 295 45 45 chr9 26505827 26506027 -91356600 + L1MEc LINE L1 1624 1823 -4573 445 293 63 52 chr9 26506211 26506498 -91356129 + L1MEc LINE L1 2012 2301 -4095 246 292 0 0 chr9 26507336 26507514 -91355113 + (TA)n Simple_repeat Simple_repeat 1 178 0 181 206 16 16 chr9 26508727 26508790 -91353837 + CT-rich Low_complexity Low_complexity 3 65 0 399 41 0 0 chr9 26509593 26509642 -91352985 + (TG)n Simple_repeat Simple_repeat 2 50 0 1312 248 162 12 chr9 26509661 26510174 -91352453 + L1MC4 LINE L1 6856 7445 -597 3638 135 40 62 chr9 26510177 26510903 -91351724 + MER50 LTR ERV1 1 710 -24 1148 233 43 94 chr9 26510913 26511513 -91351114 + L1MD3 LINE L1 7486 8022 -2 774 310 82 4 chr9 26511516 26511797 -91350830 + L2 LINE L2 2449 2751 -563 7738 16 0 1 chr9 26511812 26512777 -91349850 + L1PA3 LINE L1 5212 6175 0 306 233 41 0 chr9 26512808 26512881 -91349746 + MER94 DNA DNA 19 94 -40 323 402 40 17 chr9 26512920 26513216 -91349411 + L2 LINE L2 2819 3121 -192 382 279 52 65 chr9 26513401 26513555 -91349072 + L2 LINE L2 3161 3312 -1 22 0 0 0 chr9 26513695 26513717 -91348910 + AT_rich Low_complexity Low_complexity 1 22 0 1159 239 49 3 chr9 26514588 26514935 -91347692 + L1ME4a LINE L1 5513 5875 -246 24 0 0 0 chr9 26514950 26514974 -91347653 + AT_rich Low_complexity Low_complexity 1 24 0 581 357 65 42 chr9 26516647 26517123 -91345504 + LTR16C LTR ERVL 5 491 0 336 203 0 0 chr9 26517387 26517446 -91345181 + MLT1D LTR MaLR 1 59 -446 836 275 17 4 chr9 26517575 26517811 -91344816 + MLT1D LTR MaLR 267 505 0 322 326 62 0 chr9 26518384 26518513 -91344114 + MIR SINE MIR 50 186 -76 380 42 0 56 chr9 26518520 26518591 -91344036 + (TAATG)n Simple_repeat Simple_repeat 4 70 0 191 333 72 67 chr9 26519179 26519359 -91343268 + L2 LINE L2 2928 3108 -164 2735 94 23 15 chr9 26519979 26520374 -91342253 + MLT2A1 LTR ERVL 3 400 -44 202 158 26 0 chr9 26520374 26520412 -91342215 + (TA)n Simple_repeat Simple_repeat 1 39 0 377 113 0 16 chr9 26520454 26520516 -91342111 - MLT2A2 LTR ERVL -1 452 392 216 123 18 53 chr9 26520561 26520618 -91342009 + (TA)n Simple_repeat Simple_repeat 2 56 0 384 71 0 18 chr9 26520618 26520674 -91341953 + MLT2A1 LTR ERVL 399 453 0 190 297 143 22 chr9 26520893 26520984 -91341643 + MIR SINE MIR 98 199 -63 341 299 11 11 chr9 26521287 26521374 -91341253 + MER58A DNA MER1_type 4 90 -17 643 224 16 0 chr9 26521410 26521535 -91341092 + MER58A DNA MER1_type 95 221 -3 318 50 0 0 chr9 26522025 26522065 -91340562 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 170 0 0 chr9 26522065 26522112 -91340515 + GA-rich Low_complexity Low_complexity 2 48 0 315 171 66 26 chr9 26522362 26522438 -91340189 - L1ME4a LINE L1 -51 6070 5992 21 36 0 0 chr9 26523583 26523611 -91339016 + AT_rich Low_complexity Low_complexity 1 28 0 205 143 48 0 chr9 26524469 26524511 -91338116 + (CAGAGA)n Simple_repeat Simple_repeat 4 47 0 38 22 0 0 chr9 26525229 26525274 -91337353 + AT_rich Low_complexity Low_complexity 1 45 0 246 290 21 11 chr9 26526383 26526476 -91336151 + L1M1 LINE L1 5364 5457 -848 274 243 47 34 chr9 26526850 26526998 -91335629 - L1ME4a LINE L1 -304 5817 5668 1747 185 7 70 chr9 26527140 26527556 -91335071 + MLT1B LTR MaLR 1 390 0 407 274 46 46 chr9 26527827 26527913 -91334714 - MIR SINE MIR 0 262 174 2015 171 43 29 chr9 26527913 26528333 -91334294 + MSTB LTR MaLR 1 426 0 407 274 46 46 chr9 26528333 26528399 -91334228 - MIR SINE MIR -87 175 110 405 308 16 38 chr9 26528479 26528664 -91333963 - MIR SINE MIR 0 262 82 260 243 54 0 chr9 26529085 26529159 -91333468 + MER116 DNA Mariner 3 80 0 1636 265 115 59 chr9 26530033 26530911 -91331716 + L1MEc LINE L1 44 970 -5426 860 284 55 32 chr9 26531239 26531822 -91330805 + L1M3d LINE L1 1203 1783 -4520 21 71 0 0 chr9 26531885 26531927 -91330700 + AT_rich Low_complexity Low_complexity 1 42 0 5968 271 69 10 chr9 26532276 26534705 -91327922 + L1M3d LINE L1 2607 5179 -1203 2855 226 29 68 chr9 26534726 26535152 -91327475 + L1ME1 LINE L1 5398 5839 -563 2037 47 0 55 chr9 26535152 26535426 -91327201 + AluY SINE Alu 39 297 -14 2855 226 29 68 chr9 26535426 26536034 -91326593 + L1ME1 LINE L1 5839 6397 -5 718 197 21 7 chr9 26538686 26538828 -91323799 - MIR SINE MIR -24 238 95 535 252 65 42 chr9 26539124 26539338 -91323289 + MER106A DNA MER1_type 1 219 -17 24 0 0 0 chr9 26539961 26539985 -91322642 + AT_rich Low_complexity Low_complexity 1 24 0 771 227 58 58 chr9 26539987 26540229 -91322398 - MIR SINE MIR -15 247 6 379 330 26 26 chr9 26540224 26540418 -91322209 - MIR SINE MIR -28 234 41 * 245 29 0 29 chr9 26540528 26540563 -91322064 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 265 183 39 33 chr9 26541128 26541281 -91321346 + (TAGA)n Simple_repeat Simple_repeat 1 154 0 182 91 0 73 chr9 26541283 26541338 -91321289 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 185 146 42 156 chr9 26541755 26541851 -91320776 - MIR SINE MIR -54 208 124 351 330 101 0 chr9 26543104 26543292 -91319335 - L1ME3A LINE L1 -215 5938 5732 2560 84 91 19 chr9 26543294 26543710 -91318917 + LTR7 LTR ERV1 3 448 -2 15027 104 11 6 chr9 26543712 26546184 -91316443 + HERVH LTR ERV1 1 2983 -4730 8363 106 3 3 chr9 26546194 26548268 -91314359 + HERVH LTR ERV1 3140 5149 -2564 1239 171 19 0 chr9 26548269 26548485 -91314142 + HERVH LTR ERV1 5600 5819 -1894 * 2370 100 48 13 chr9 26548483 26548862 -91313765 + HERVH LTR ERV1 7322 7713 0 2050 79 16 13 chr9 26548862 26549220 -91313407 + LTR7 LTR ERV1 1 448 -2 352 299 102 0 chr9 26549358 26549508 -91313119 - L1ME3A LINE L1 -588 5559 5394 323 356 96 10 chr9 26549509 26549821 -91312806 - L1ME3A LINE L1 -4635 1494 1156 339 280 29 34 chr9 26549873 26550080 -91312547 - L1ME3A LINE L1 -5011 1108 903 2963 113 7 13 chr9 26550154 26550834 -91311793 - L1PA8A LINE L1 -352 5779 5023 321 357 50 11 chr9 26550837 26551019 -91311608 - L1ME3A LINE L1 -5370 749 561 939 311 83 11 chr9 26552076 26552427 -91310200 - MLT2E LTR ERVL -240 388 13 333 0 0 0 chr9 26552564 26552601 -91310026 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 281 318 150 18 chr9 26553546 26553766 -91308861 + MIR SINE MIR 14 262 0 480 247 41 53 chr9 26553856 26554026 -91308601 - L2 LINE L2 0 3313 3146 314 233 107 39 chr9 26554110 26554213 -91308414 + L2 LINE L2 3204 3313 0 22 56 0 0 chr9 26554315 26554351 -91308276 + AT_rich Low_complexity Low_complexity 1 36 0 778 195 40 29 chr9 26555268 26555442 -91307185 + MER45A DNA AcHobo 1 176 -2 386 272 87 74 chr9 26555444 26555756 -91306871 + LTR33 LTR ERVL 198 513 -8 24 0 0 0 chr9 26556598 26556622 -91306005 + AT_rich Low_complexity Low_complexity 1 24 0 525 281 22 45 chr9 26556624 26556802 -91305825 - MIR SINE MIR -18 244 71 189 295 76 97 chr9 26557466 26557703 -91304924 + L2 LINE L2 1830 2061 -1253 477 50 0 0 chr9 26558664 26558724 -91303903 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 903 127 38 6 chr9 26559421 26559579 -91303048 + L1PA16 LINE L1 5985 6147 -19 1728 243 27 2 chr9 26559818 26560292 -91302335 + L1MC3 LINE L1 4849 5334 -812 5922 206 88 58 chr9 26560297 26562140 -91300487 + L1MC3 LINE L1 5432 7329 -456 1243 269 33 3 chr9 26562166 26562556 -91300071 - L1ME LINE L1 -351 5882 5481 1906 321 65 32 chr9 26562567 26564084 -91298543 - L1ME LINE L1 -4757 1639 74 2109 64 0 8 chr9 26564090 26564354 -91298273 - AluY SINE Alu -13 298 37 5415 59 4 4 chr9 26564363 26565063 -91297564 - L1PA5 LINE L1 0 6154 5455 561 79 0 0 chr9 26565063 26565139 -91297488 + L1PA5 LINE L1 5408 5483 -672 244 176 14 40 chr9 26565663 26565737 -91296890 + (TATAA)n Simple_repeat Simple_repeat 1 72 0 183 80 0 0 chr9 26566738 26566763 -91295864 + (A)n Simple_repeat Simple_repeat 1 25 0 316 279 0 0 chr9 26567697 26567776 -91294851 + MER5A DNA MER1_type 28 106 -83 625 271 63 14 chr9 26567815 26568036 -91294591 + MIR SINE MIR 23 254 -8 608 235 0 0 chr9 26568427 26568559 -91294068 + FLAM_C SINE Alu 2 133 0 1171 178 10 0 chr9 26568591 26568788 -91293839 + AluSg/x SINE Alu 85 283 -29 22 0 0 0 chr9 26568794 26568816 -91293811 + AT_rich Low_complexity Low_complexity 1 22 0 551 195 34 105 chr9 26568993 26569260 -91293367 + L1ME2 LINE L1 3671 3918 -2228 1902 254 129 42 chr9 26569291 26570455 -91292172 + L1ME2 LINE L1 4114 5487 -677 1940 37 0 12 chr9 26570455 26570699 -91291928 + L1PA5 LINE L1 5914 6154 0 1902 254 129 42 chr9 26570699 26571441 -91291186 + L1ME2 LINE L1 5487 6163 -1 14269 49 1 2 chr9 26571632 26573432 -91289195 - L1P LINE L1 -3330 2816 1019 7263 34 12 1 chr9 26573432 26574737 -91287890 + L1PA4 LINE L1 4839 6153 -2 2384 113 20 0 chr9 26574757 26575111 -91287516 - L1PA10 LINE L1 -7 6161 5801 257 340 39 0 chr9 26575320 26575423 -91287204 + MIR SINE MIR 35 141 -121 1559 172 0 19 chr9 26575587 26575854 -91286773 + AluSq SINE Alu 1 262 -51 256 361 110 11 chr9 26578106 26578297 -91284330 + MIR SINE MIR 29 238 -24 227 180 80 0 chr9 26579330 26579380 -91283247 + HsTC2 DNA Tc2 772 825 -1073 551 237 78 23 chr9 26579490 26579823 -91282804 - L1MB8 LINE L1 -7 6171 5782 233 238 95 0 chr9 26580014 26580077 -91282550 + L1ME4a LINE L1 5529 5597 -2188 363 23 0 0 chr9 26580378 26580422 -91282205 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 242 347 0 0 chr9 26581415 26581487 -91281140 - MIR SINE MIR -18 244 173 1081 217 63 43 chr9 26582308 26582592 -91280035 - MLT1A2 LTR MaLR 0 467 162 3399 52 5 14 chr9 26582592 26583038 -91279589 - L1PA7 LINE L1 -5 6149 5708 1081 217 63 43 chr9 26583038 26583194 -91279433 - MLT1A2 LTR MaLR -305 162 11 590 87 64 10 chr9 26583896 26584372 -91278255 + (TA)n Simple_repeat Simple_repeat 1 501 0 1489 191 54 7 chr9 26584574 26584872 -91277755 - AluJb SINE Alu 0 312 1 754 175 0 0 chr9 26585272 26585392 -91277235 + FLAM_A SINE Alu 2 121 -12 363 23 0 0 chr9 26585393 26585437 -91277190 + (CATA)n Simple_repeat Simple_repeat 2 45 0 188 273 141 50 chr9 26585860 26585959 -91276668 + L2 LINE L2 3206 3313 0 21 71 0 0 chr9 26586163 26586205 -91276422 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr9 26586925 26586957 -91275670 + AT_rich Low_complexity Low_complexity 1 32 0 2004 108 28 3 chr9 26587083 26587369 -91275258 - AluSx SINE Alu -19 293 1 210 323 30 20 chr9 26588111 26588210 -91274417 + MER5A DNA MER1_type 7 106 -83 339 314 176 6 chr9 26590306 26590618 -91272009 + L1ME4a LINE L1 5741 6105 -16 22 0 0 0 chr9 26590619 26590641 -91271986 + AT_rich Low_complexity Low_complexity 1 22 0 662 195 31 0 chr9 26590851 26590979 -91271648 + MLT1A2 LTR MaLR 1 132 -242 581 220 14 28 chr9 26590971 26591112 -91271515 + MLT1A2 LTR MaLR 236 374 0 * 345 266 11 82 chr9 26591610 26591877 -91270750 + L1MEd LINE L1 1249 1496 -5138 305 321 57 44 chr9 26591897 26592146 -91270481 + L1MEd LINE L1 1457 1765 -4832 4297 148 16 7 chr9 26592295 26593036 -91269591 + L1MC1 LINE L1 5585 6332 -1 313 306 147 48 chr9 26593156 26593577 -91269050 + L1MEd LINE L1 2135 2597 -4228 11010 249 45 55 chr9 26593788 26597837 -91264790 + L1MA4A LINE L1 3 4099 -2749 3867 180 51 13 chr9 26597810 26598902 -91263725 + L1MA4A LINE L1 5818 6861 -7 * 479 175 33 0 chr9 26598972 26599092 -91263535 + (TA)n Simple_repeat Simple_repeat 2 125 0 1822 124 4 0 chr9 26599112 26599362 -91263265 - AluSx SINE Alu -61 251 1 189 0 0 0 chr9 26599442 26599463 -91263164 + (T)n Simple_repeat Simple_repeat 1 21 0 548 259 96 7 chr9 26599469 26599739 -91262888 + L1MEd LINE L1 3220 3513 -3131 416 222 90 21 chr9 26599829 26599973 -91262654 + Charlie2a DNA MER1_type 1421 1574 -1288 818 249 92 66 chr9 26600079 26600494 -91262133 + Charlie2a DNA MER1_type 1827 2265 -597 1479 185 46 0 chr9 26600494 26600775 -91261852 + AluJo SINE Alu 1 294 -18 818 249 92 66 chr9 26600775 26600993 -91261634 + Charlie2a DNA MER1_type 2265 2476 -386 385 283 78 58 chr9 26601155 26601413 -91261214 - Charlie2a DNA MER1_type -2437 345 83 243 343 75 14 chr9 26601542 26601688 -91260939 - MER112 DNA MER1_type -1 259 105 227 284 0 0 chr9 26601706 26601773 -91260854 + (TA)n Simple_repeat Simple_repeat 2 68 0 183 80 0 0 chr9 26602357 26602382 -91260245 + (A)n Simple_repeat Simple_repeat 1 25 0 2095 110 3 0 chr9 26603683 26603992 -91258635 - AluSq SINE Alu 0 310 1 216 256 12 24 chr9 26604349 26604431 -91258196 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr9 26604511 26604532 -91258095 + AT_rich Low_complexity Low_complexity 1 21 0 230 148 49 0 chr9 26606145 26606206 -91256421 + (TAATG)n Simple_repeat Simple_repeat 3 66 0 205 339 111 12 chr9 26606313 26606336 -91256291 + MIR SINE MIR 34 53 -209 2018 112 10 7 chr9 26606336 26606630 -91255997 - AluSg SINE Alu -15 295 1 205 339 111 12 chr9 26606630 26606777 -91255850 + MIR SINE MIR 53 221 -41 477 130 11 22 chr9 26606962 26607054 -91255573 + L1MC2 LINE L1 6254 6344 0 253 379 23 29 chr9 26609622 26609796 -91252831 + MIR SINE MIR 20 192 -70 3423 204 67 18 chr9 26611146 26611775 -91250852 - L1MC3 LINE L1 -21 7764 7167 1498 192 67 28 chr9 26611775 26612134 -91250493 - THE1C LTR MaLR 0 375 3 9069 156 7 35 chr9 26612136 26613760 -91248867 - THE1C-int LTR MaLR 0 1580 3 1786 132 82 28 chr9 26613763 26613936 -91248691 - THE1C LTR MaLR -1 374 212 378 0 0 0 chr9 26613936 26613978 -91248649 + (GA)n Simple_repeat Simple_repeat 1 42 0 1786 132 82 28 chr9 26613978 26614159 -91248468 - THE1C LTR MaLR -163 212 1 3423 204 67 18 chr9 26614159 26614379 -91248248 - L1MC3 LINE L1 -619 7166 6866 183 114 0 0 chr9 26614380 26614415 -91248212 + (TTAG)n Simple_repeat Simple_repeat 3 37 0 6217 258 47 16 chr9 26614452 26617633 -91244994 - L1MCc LINE L1 -1538 5403 1899 2742 256 67 32 chr9 26617640 26617837 -91244790 - L1MCc LINE L1 -5106 1316 1127 192 40 0 0 chr9 26617837 26617862 -91244765 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2742 256 67 32 chr9 26617862 26618275 -91244352 - L1MCc LINE L1 -5295 1127 730 2521 48 3 3 chr9 26618275 26618585 -91244042 + AluY SINE Alu 1 310 -1 2742 256 67 32 chr9 26618585 26618899 -91243728 - L1MCc LINE L1 -5692 730 12 312 244 90 65 chr9 26618957 26619158 -91243469 + L1MC4a LINE L1 5741 5946 -1862 410 95 0 95 chr9 26619208 26619282 -91243345 + MLT2B3 LTR ERVL 1 67 -487 2351 208 22 28 chr9 26619332 26619832 -91242795 + MLT2B3 LTR ERVL 38 534 -20 24 53 0 0 chr9 26619866 26619904 -91242723 + AT_rich Low_complexity Low_complexity 1 38 0 198 103 0 0 chr9 26619986 26620015 -91242612 + (TA)n Simple_repeat Simple_repeat 1 29 0 459 288 23 57 chr9 26621025 26621202 -91241425 + MER117 DNA MER1_type 3 173 -24 308 269 9 56 chr9 26621309 26621417 -91241210 - MIR SINE MIR 0 262 160 2563 208 56 20 chr9 26622419 26623059 -91239568 - L1MB8 LINE L1 -5 6173 5511 1089 253 54 41 chr9 26623054 26623417 -91239210 - L1M4b LINE L1 -6355 504 11 * 5618 118 36 14 chr9 26623611 26624573 -91238054 - Tigger3b DNA MER2_type 0 1231 249 1733 220 40 30 chr9 26624573 26624978 -91237649 - LTR2 LTR ERV1 0 449 41 1487 138 74 0 chr9 26625065 26625296 -91237331 - Tigger3b DNA MER2_type -983 248 1 1306 284 61 33 chr9 26625296 26626511 -91236116 + L1MEc LINE L1 1619 2836 -3379 1806 224 25 43 chr9 26626529 26626967 -91235660 - MLT2B3 LTR ERVL -124 430 1 2568 278 35 23 chr9 26626969 26627176 -91235451 + L1MEc LINE L1 240 443 -5953 1845 151 13 0 chr9 26627176 26627474 -91235153 + AluSx SINE Alu 4 305 -7 2568 278 35 23 chr9 26627474 26628207 -91234420 + L1MEc LINE L1 443 1191 -5205 * 2675 181 105 40 chr9 26628198 26628660 -91233967 + MLT-int LTR MaLR 32 545 -1190 1398 158 81 56 chr9 26628660 26628945 -91233682 + AluSx SINE Alu 1 292 -20 2675 181 105 40 chr9 26628945 26629100 -91233527 + MLT-int LTR MaLR 545 689 -1046 1702 183 19 46 chr9 26629111 26629483 -91233144 - THE1B LTR MaLR 0 364 3 2457 102 3 0 chr9 26629485 26629819 -91232808 - THE1B-int LTR MaLR 0 1580 1246 2343 222 13 4 chr9 26629823 26630287 -91232340 + MLT1A1-int LTR MaLR 1268 1735 0 1039 202 102 97 chr9 26630287 26630649 -91231978 + MLT1A1 LTR MaLR 1 364 -1 1602 216 94 107 chr9 26631997 26632946 -91229681 - LTR1B LTR ERV1 -1 1019 1 328 316 113 47 chr9 26635580 26635855 -91226772 - MLT1J1 LTR MaLR -8 438 146 22 35 0 0 chr9 26636534 26636563 -91226064 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 26636794 26636815 -91225812 + AT_rich Low_complexity Low_complexity 1 21 0 252 373 0 26 chr9 26636974 26637127 -91225500 + MIR SINE MIR 104 252 -10 3270 231 67 24 chr9 26687239 26688015 -91174612 + L1MEc LINE L1 1209 1950 -4265 2746 148 14 18 chr9 26688015 26688520 -91174107 + L1MA8 LINE L1 5784 6286 -5 3270 231 67 24 chr9 26688520 26689168 -91173459 + L1MEc LINE L1 1950 2694 -3521 269 172 17 0 chr9 26689176 26689234 -91173393 + L1MD1 LINE L1 1888 1946 -4594 2074 269 40 19 chr9 26689322 26690226 -91172401 + L1MD1 LINE L1 3039 3961 -2579 1903 182 48 42 chr9 26690258 26690798 -91171829 - MLT2A2 LTR ERVL 0 554 1 4753 242 48 13 chr9 26690798 26693366 -91169261 + L1MD1 LINE L1 3973 6636 0 2147 116 0 26 chr9 26693464 26693775 -91168852 - AluSx SINE Alu -7 305 3 353 328 153 6 chr9 26694476 26694653 -91167974 + MIR SINE MIR 1 203 -59 209 305 0 49 chr9 26694882 26694964 -91167663 + MIR SINE MIR 75 152 -110 1065 95 4 17 chr9 26695031 26695263 -91167364 + (TTCC)n Simple_repeat Simple_repeat 1 228 0 22 0 0 0 chr9 26695428 26695450 -91167177 + AT_rich Low_complexity Low_complexity 1 22 0 445 180 0 11 chr9 26696470 26696559 -91166068 - MER33 DNA MER1_type 0 363 276 374 247 47 9 chr9 26696553 26696664 -91165963 - MER33 DNA MER1_type -250 74 1 * 23 0 0 0 chr9 26697163 26697186 -91165441 + AT_rich Low_complexity Low_complexity 1 23 0 2421 63 3 0 chr9 26697208 26697507 -91165120 + AluSp SINE Alu 2 301 -12 32 26 0 0 chr9 26697555 26697594 -91165033 + AT_rich Low_complexity Low_complexity 1 39 0 392 319 112 30 chr9 26698189 26698421 -91164206 + L1ME LINE L1 5351 5601 -520 29 28 0 0 chr9 26698511 26698547 -91164080 + AT_rich Low_complexity Low_complexity 1 36 0 277 200 14 14 chr9 26698555 26698625 -91164002 + L1ME LINE L1 5769 5838 -283 2429 267 126 36 chr9 26698773 26700226 -91162401 + Charlie7 DNA MER1_type 725 2308 -304 24 0 0 0 chr9 26700245 26700269 -91162358 + AT_rich Low_complexity Low_complexity 1 24 0 1936 220 106 33 chr9 26701091 26701609 -91161018 + ERVL-F LTR ERVL 5201 5756 -8 313 338 35 7 chr9 26701609 26701751 -91160876 + MLT2F LTR ERVL 1 146 -517 * 464 220 0 13 chr9 26701750 26701865 -91160762 + MLT1E3 LTR MaLR 46 205 -449 378 0 0 0 chr9 26703342 26703384 -91159243 + (CA)n Simple_repeat Simple_repeat 1 42 0 201 133 0 0 chr9 26703677 26703707 -91158920 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 357 145 0 0 chr9 26703797 26703859 -91158768 + (TA)n Simple_repeat Simple_repeat 1 62 0 1875 128 35 10 chr9 26703911 26704199 -91158428 + AluSq SINE Alu 1 295 -18 320 341 7 51 chr9 26704209 26704347 -91158280 - MIR SINE MIR -110 152 21 943 218 57 5 chr9 26704391 26704584 -91158043 + MER82 DNA MER2_type 445 647 -6 186 103 0 0 chr9 26705060 26705089 -91157538 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 137 98 20 chr9 26706377 26706428 -91156199 - L2 LINE L2 -4 3309 3255 314 284 64 18 chr9 26706483 26706592 -91156035 + L2 LINE L2 3192 3305 -8 * 340 288 179 14 chr9 26706578 26706790 -91155837 - MIR SINE MIR -10 252 6 7252 160 11 21 chr9 26708195 26709505 -91153122 - HSMAR2 DNA Mariner -3 1299 3 272 196 18 0 chr9 26709653 26709709 -91152918 + MER63 DNA MER1_type 694 750 -311 241 211 0 19 chr9 26709710 26709762 -91152865 + MER63 DNA MER1_type 979 1029 -33 252 59 0 0 chr9 26710029 26710063 -91152564 + (CA)n Simple_repeat Simple_repeat 2 35 0 313 296 120 69 chr9 26711203 26711277 -91151350 + L2 LINE L2 3024 3093 -220 1973 144 3 0 chr9 26711277 26711569 -91151058 - AluSx SINE Alu -19 293 1 313 296 120 69 chr9 26711569 26711768 -91150859 + L2 LINE L2 3093 3311 -2 195 100 0 0 chr9 26713730 26713760 -91148867 + (CA)n Simple_repeat Simple_repeat 1 30 0 1808 166 44 14 chr9 26713968 26714330 -91148297 - THE1C LTR MaLR 0 375 3 9014 133 38 40 chr9 26714332 26715913 -91146714 - THE1C-int LTR MaLR 0 1580 3 1453 191 70 14 chr9 26715915 26716270 -91146357 - THE1C LTR MaLR 0 375 1 895 232 150 37 chr9 26716294 26716695 -91145932 + MLT1D LTR MaLR 54 499 -6 15401 167 16 4 chr9 26717472 26721136 -91141491 - L1PA11 LINE L1 -1 7611 3894 251 231 0 13 chr9 26721136 26721214 -91141413 + (TG)n Simple_repeat Simple_repeat 2 78 0 2207 98 0 3 chr9 26721228 26721523 -91141104 - AluSq SINE Alu -19 294 1 6131 238 31 28 chr9 26721523 26724616 -91138011 - L1PA11 LINE L1 -3686 3898 11 5069 121 17 10 chr9 26724736 26725510 -91137117 + MER4E LTR ERV1 1 779 0 349 85 0 0 chr9 26725623 26725670 -91136957 + LOR1b LTR ERV1 1 47 -414 2107 173 14 0 chr9 26725671 26726030 -91136597 + LOR1a LTR ERV1 134 497 0 188 392 39 10 chr9 26727274 26727376 -91135251 + MER5A DNA MER1_type 61 165 -24 367 62 62 0 chr9 26727722 26727787 -91134840 + CT-rich Low_complexity Low_complexity 4 72 0 1775 159 0 7 chr9 26727804 26728093 -91134534 - AluJb SINE Alu -25 287 1 432 275 9 0 chr9 26728844 26728953 -91133674 + MIR SINE MIR 87 196 -66 2059 233 20 39 chr9 26729108 26729618 -91133009 + MLT1D LTR MaLR 1 500 -5 373 270 58 0 chr9 26729603 26729740 -91132887 - MLT1L LTR MaLR -59 556 412 * 23 33 0 0 chr9 26729899 26729929 -91132698 + AT_rich Low_complexity Low_complexity 1 30 0 405 257 104 69 chr9 26730289 26730624 -91132003 - L1M4 LINE L1 -1488 4658 4312 222 62 0 0 chr9 26730911 26730943 -91131684 + (TG)n Simple_repeat Simple_repeat 2 33 0 713 350 104 12 chr9 26731048 26731622 -91131005 - L1MEd LINE L1 -5491 628 2 321 309 62 88 chr9 26732062 26732483 -91130144 - L1MDa LINE L1 -4476 2064 1655 22 35 0 0 chr9 26732526 26732555 -91130072 + AT_rich Low_complexity Low_complexity 1 29 0 261 317 234 35 chr9 26733246 26733729 -91128898 + L2 LINE L2 268 846 -2468 200 247 14 27 chr9 26734230 26734303 -91128324 + GA-rich Low_complexity Low_complexity 2 73 0 267 238 63 0 chr9 26734363 26734426 -91128201 - MIR SINE MIR -109 99 33 269 248 120 26 chr9 26735192 26735309 -91127318 + MER67D LTR ERV1 386 513 -1 415 218 80 58 chr9 26735494 26735682 -91126945 - MER106A DNA MER1_type -44 192 1 7220 17 0 0 chr9 26736021 26736846 -91125781 + L1PA3 LINE L1 5328 6152 -3 21 57 0 0 chr9 26736867 26736902 -91125725 + AT_rich Low_complexity Low_complexity 1 35 0 209 179 0 0 chr9 26736957 26736996 -91125631 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1761 209 64 11 chr9 26737441 26737876 -91124751 - MER39 LTR ERV1 0 707 250 237 232 188 0 chr9 26737850 26737919 -91124708 - LTR29 LTR ERV1 -534 88 7 * 1933 111 54 0 chr9 26738089 26738369 -91124258 - AluSg SINE Alu -12 298 4 272 338 92 7 chr9 26738955 26739097 -91123530 + MIR SINE MIR 29 182 -80 24 0 0 0 chr9 26739159 26739183 -91123444 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr9 26740783 26740824 -91121803 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr9 26740876 26740904 -91121723 + AT_rich Low_complexity Low_complexity 1 28 0 240 216 0 63 chr9 26741151 26741262 -91121365 + T-rich Low_complexity Low_complexity 3 106 0 295 301 29 0 chr9 26741331 26741434 -91121193 + MER69A DNA AcHobo 65 170 -7 26 50 0 0 chr9 26741461 26741501 -91121126 + AT_rich Low_complexity Low_complexity 1 40 0 234 321 19 19 chr9 26741620 26741726 -91120901 + LTR48B LTR ERV1 1 106 -538 993 233 56 86 chr9 26741729 26742011 -91120616 + MER39 LTR ERV1 335 605 -102 2081 118 16 0 chr9 26742011 26742316 -91120311 - AluSg SINE Alu 0 310 1 993 233 56 86 chr9 26742316 26742407 -91120220 + MER39 LTR ERV1 605 697 -10 29 60 0 0 chr9 26742479 26742529 -91120098 + AT_rich Low_complexity Low_complexity 1 50 0 400 291 77 57 chr9 26742756 26743106 -91119521 - L1MEc LINE L1 -3516 2699 2343 965 198 84 0 chr9 26743344 26743581 -91119046 - L1MD3 LINE L1 -881 7114 6858 1139 261 35 0 chr9 26743586 26743956 -91118671 - L1M LINE L1 -836 5310 4944 464 283 31 19 chr9 26743970 26744129 -91118498 + L1MEc LINE L1 553 713 -5683 1125 304 35 29 chr9 26744143 26744634 -91117993 - L1MEc LINE L1 -5869 527 34 2161 92 3 41 chr9 26746658 26746974 -91115653 - AluSc SINE Alu 0 309 6 184 337 145 0 chr9 26747324 26747407 -91115220 + L2 LINE L2 3161 3255 -17 21 57 0 0 chr9 26747852 26747887 -91114740 + AT_rich Low_complexity Low_complexity 1 35 0 186 247 62 62 chr9 26748181 26748278 -91114349 - MIR SINE MIR -64 144 48 21 57 0 0 chr9 26748648 26748683 -91113944 + AT_rich Low_complexity Low_complexity 1 35 0 4516 239 93 49 chr9 26748719 26750680 -91111947 + L1M4 LINE L1 14 2059 -4587 340 326 94 45 chr9 26750689 26750956 -91111671 + L1M4 LINE L1 2205 2484 -4162 1690 186 18 0 chr9 26751056 26751341 -91111286 - AluJo SINE Alu -19 293 4 367 274 94 86 chr9 26751364 26751747 -91110880 + MLT1I LTR MaLR 1 386 -23 24 32 0 0 chr9 26751844 26751875 -91110752 + AT_rich Low_complexity Low_complexity 1 31 0 2263 124 16 24 chr9 26752123 26752501 -91110126 + THE1C LTR MaLR 1 375 0 8927 138 28 48 chr9 26752501 26754114 -91108513 + THE1C-int LTR MaLR 1 1580 0 1940 159 21 29 chr9 26754114 26754492 -91108135 + THE1C LTR MaLR 1 375 0 193 391 0 11 chr9 26754539 26754631 -91107996 - MIR SINE MIR 0 262 172 1681 186 139 16 chr9 26755951 26756332 -91106295 - MSTA LTR MaLR 0 428 1 8412 186 30 5 chr9 26756332 26757942 -91104685 - MSTA-int LTR MaLR 0 1651 1 1828 171 127 16 chr9 26757942 26758327 -91104300 - MSTA LTR MaLR 0 428 1 2266 119 0 0 chr9 26758415 26758725 -91103902 - AluSg SINE Alu 0 310 1 208 231 26 13 chr9 26759612 26759690 -91102937 + CT-rich Low_complexity Low_complexity 2 80 0 205 315 126 42 chr9 26760312 26760455 -91102172 - L2 LINE L2 0 3313 3159 342 331 16 16 chr9 26760678 26760802 -91101825 - MIR SINE MIR -121 141 18 4316 234 50 14 chr9 26762120 26765137 -91097490 - L1M4c LINE L1 -2511 3871 800 245 357 31 16 chr9 26765500 26765629 -91096998 - L1M4c LINE L1 -5756 547 417 1241 122 11 0 chr9 26766121 26766309 -91096318 - L1PA16 LINE L1 -259 5907 5718 313 297 64 64 chr9 26766323 26766606 -91096021 - L1MEd LINE L1 -5192 939 657 271 209 15 30 chr9 26766747 26766814 -91095813 - L1MEd LINE L1 -5476 643 578 1628 222 160 33 chr9 26766866 26767279 -91095348 + MLT2B2 LTR ERVL 3 481 -34 392 37 19 0 chr9 26767279 26767333 -91095294 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1628 222 160 33 chr9 26767333 26767374 -91095253 + MLT2B2 LTR ERVL 481 515 0 1607 186 7 0 chr9 26768968 26769278 -91093349 + AluJb SINE Alu 5 316 0 918 276 23 5 chr9 26769279 26769493 -91093134 - MER21B LTR ERV1 -631 232 15 462 187 0 0 chr9 26769501 26769592 -91093035 + (TA)n Simple_repeat Simple_repeat 2 92 0 1483 226 137 67 chr9 26769600 26770258 -91092369 + MER50 LTR ERV1 10 713 -21 1441 249 67 41 chr9 26770324 26770785 -91091842 + MER21B LTR ERV1 248 720 -143 4742 147 72 12 chr9 26770860 26771712 -91090915 + MER4D LTR ERV1 1 903 0 189 221 59 59 chr9 26771934 26772002 -91090625 + L2 LINE L2 1365 1432 -1882 249 277 116 26 chr9 26773483 26773638 -91088989 - MIR SINE MIR 0 262 94 202 295 7 81 chr9 26773688 26773837 -91088790 + MIR SINE MIR 67 204 -58 22 56 0 0 chr9 26775254 26775290 -91087337 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr9 26775346 26775377 -91087250 + AT_rich Low_complexity Low_complexity 1 31 0 9145 139 42 40 chr9 26775808 26778549 -91084078 - L1PA13 LINE L1 -1 6162 3424 516 179 17 0 chr9 26778562 26778677 -91083950 - L1 LINE L1 -2061 4085 3963 270 353 44 15 chr9 26780653 26780789 -91081838 - MIR SINE MIR -111 151 12 1215 201 37 13 chr9 26781092 26781390 -91081237 + AluJo SINE Alu 2 306 -6 629 302 68 14 chr9 26783090 26783312 -91079315 - MIR SINE MIR -26 236 3 2261 86 0 0 chr9 26783416 26783708 -91078919 - AluY SINE Alu -19 292 1 837 329 162 30 chr9 26783718 26784543 -91078084 + L3 LINE CR1 470 1403 -174 478 114 0 0 chr9 26784960 26785030 -91077597 - AluJ/FRAM SINE Alu -16 296 227 1279 159 0 10 chr9 26785130 26785338 -91077289 - AluSx SINE Alu -106 206 1 2214 127 22 14 chr9 26785395 26785756 -91076871 + THE1B LTR MaLR 1 364 0 320 328 78 36 chr9 26786050 26786242 -91076385 - MIR SINE MIR -7 255 56 342 0 0 0 chr9 26786755 26786793 -91075834 + (CA)n Simple_repeat Simple_repeat 2 39 0 227 284 12 25 chr9 26787230 26787311 -91075316 + MIR3 SINE MIR 125 204 -4 218 297 109 10 chr9 26787440 26787541 -91075086 + L2 LINE L2 3203 3313 0 243 0 0 0 chr9 26787844 26787871 -91074756 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 247 169 24 84 chr9 26788189 26788272 -91074355 - MIR SINE MIR -71 191 114 21 57 0 0 chr9 26790313 26790348 -91072279 + AT_rich Low_complexity Low_complexity 1 35 0 214 379 40 0 chr9 26790849 26790973 -91071654 - MIR3 SINE MIR -43 165 37 24 32 0 0 chr9 26791480 26791511 -91071116 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chr9 26791631 26791670 -91070957 + (GA)n Simple_repeat Simple_repeat 1 39 0 518 304 42 35 chr9 26791827 26792087 -91070540 - MIR SINE MIR 0 262 1 234 383 74 0 chr9 26793421 26793583 -91069044 - MIR SINE MIR 0 262 89 1625 170 30 7 chr9 26794002 26794302 -91068325 + AluJb SINE Alu 1 307 -5 454 61 0 192 chr9 26794781 26794823 -91067804 + MADE1 DNA Mariner 1 49 -31 821 36 0 9 chr9 26794823 26794933 -91067694 + (TTTTA)n Simple_repeat Simple_repeat 2 110 0 1868 75 43 53 chr9 26794935 26795217 -91067410 - AluY SINE Alu -30 281 3 454 61 0 192 chr9 26795217 26795270 -91067357 + MADE1 DNA Mariner 50 80 0 396 344 109 0 chr9 26795569 26795761 -91066866 + MIR SINE MIR 47 259 -3 339 277 77 32 chr9 26796168 26796323 -91066304 - MIR SINE MIR -68 194 33 4307 184 22 35 chr9 26796895 26797720 -91064907 - MER21B LTR ERV1 -49 814 1 1970 151 0 3 chr9 26798066 26798370 -91064257 - AluSx SINE Alu -9 303 1 21 0 0 0 chr9 26798522 26798543 -91064084 + AT_rich Low_complexity Low_complexity 1 21 0 1183 173 106 15 chr9 26798688 26799043 -91063584 + MSTC LTR MaLR 13 428 0 249 255 0 0 chr9 26799882 26799929 -91062698 + MIR3 SINE MIR 149 195 -13 407 354 35 31 chr9 26801409 26801663 -91060964 - MIR SINE MIR -6 256 2 356 191 79 34 chr9 26801955 26802044 -91060583 - MIR SINE MIR -50 212 120 193 233 33 89 chr9 26802967 26803057 -91059570 - MIR SINE MIR -72 190 106 424 231 0 0 chr9 26803131 26803209 -91059418 + Tigger3(Golem) DNA MER2_type 2 79 -2950 * 917 199 20 15 chr9 26803189 26803385 -91059242 + Tigger3(Golem) DNA MER2_type 2831 3027 -2 868 259 62 10 chr9 26803958 26804247 -91058380 + MER46C DNA MER2_type 5 308 -30 395 305 107 16 chr9 26804628 26804815 -91057812 + MIR SINE MIR 59 262 0 239 347 138 0 chr9 26805955 26806122 -91056505 + MIR SINE MIR 67 256 -6 563 335 8 20 chr9 26806336 26806581 -91056046 - MIR SINE MIR 0 262 21 1955 231 41 12 chr9 26806661 26807150 -91055477 - MLT1D LTR MaLR 0 505 3 274 221 86 36 chr9 26808863 26809003 -91053624 + L1MC5 LINE L1 7504 7650 -311 213 121 0 0 chr9 26809182 26809215 -91053412 + (CA)n Simple_repeat Simple_repeat 1 33 0 254 266 17 121 chr9 26809329 26809502 -91053125 + MIR SINE MIR 61 215 -47 354 250 9 43 chr9 26810220 26810236 -91052391 - L1MA10 LINE L1 -52 6282 6267 2724 242 34 37 chr9 26810236 26811053 -91051574 - L1ME1 LINE L1 -55 6111 5297 262 178 37 37 chr9 26811195 26811302 -91051325 + L1MEc LINE L1 1004 1110 -5286 1047 196 19 44 chr9 26811308 26811578 -91051049 - L1MA10 LINE L1 -2026 4120 3858 * 4980 201 38 28 chr9 26811573 26812910 -91049717 + L1MA10 LINE L1 4126 5448 -886 1971 137 3 6 chr9 26812910 26813223 -91049404 + AluSq SINE Alu 1 312 -1 4980 201 38 28 chr9 26813223 26813404 -91049223 + L1MA10 LINE L1 5448 5626 -708 3687 126 11 28 chr9 26813404 26814014 -91048613 - MER4A LTR ERV1 0 600 1 4980 201 38 28 chr9 26814014 26814676 -91047951 + L1MA10 LINE L1 5626 6323 -11 296 195 58 35 chr9 26814783 26814870 -91047757 + L1MEc LINE L1 1789 1877 -4519 * 1968 257 65 48 chr9 26814868 26815611 -91047016 - L1MEc LINE L1 -5608 788 34 28 29 0 0 chr9 26816671 26816706 -91045921 + AT_rich Low_complexity Low_complexity 1 35 0 304 244 12 0 chr9 26817445 26817527 -91045100 - L1MC4a LINE L1 -1875 5933 5851 268 274 42 32 chr9 26818215 26818310 -91044317 + L2 LINE L2 3208 3303 -10 21 0 0 0 chr9 26819295 26819316 -91043311 + AT_rich Low_complexity Low_complexity 1 21 0 425 338 87 14 chr9 26819834 26820041 -91042586 - MIR SINE MIR -3 259 38 557 259 85 36 chr9 26820116 26820338 -91042289 - MIR SINE MIR 0 262 31 825 185 67 0 chr9 26820408 26820586 -91042041 - L1MA4 LINE L1 0 6300 6111 487 282 106 12 chr9 26820608 26820778 -91041849 - MIR SINE MIR 0 262 77 269 365 73 7 chr9 26821227 26821364 -91041263 + MIR SINE MIR 51 196 -66 641 246 63 34 chr9 26821503 26821710 -91040917 + MIR SINE MIR 50 262 0 2513 50 0 0 chr9 26826488 26826788 -91035839 - AluY SINE Alu -9 302 3 265 299 43 22 chr9 26827227 26827411 -91035216 - L1M4 LINE L1 -3528 2618 2431 21 82 0 0 chr9 26827824 26827873 -91034754 + AT_rich Low_complexity Low_complexity 1 49 0 229 213 64 32 chr9 26827879 26827973 -91034654 - MER103 DNA DNA -4 162 66 1033 181 6 0 chr9 26829125 26829296 -91033331 + MER2 DNA MER2_type 2 173 -172 183 162 0 0 chr9 26829362 26829399 -91033228 + T-rich Low_complexity Low_complexity 1 37 0 1029 179 0 6 chr9 26829406 26829585 -91033042 - AluJb SINE Alu -124 188 11 407 195 24 12 chr9 26829622 26829704 -91032923 + MER2 DNA MER2_type 263 345 0 500 301 76 65 chr9 26830229 26830505 -91032122 + MLT1K LTR MaLR 310 588 0 428 344 23 0 chr9 26831983 26832114 -91030513 - MIR3 SINE MIR -11 197 64 22 0 0 0 chr9 26834177 26834199 -91028428 + AT_rich Low_complexity Low_complexity 1 22 0 336 148 0 0 chr9 26835564 26835625 -91027002 + (TC)n Simple_repeat Simple_repeat 1 61 0 7052 6 0 0 chr9 26835983 26836776 -91025851 - L1HS LINE L1 0 6155 5363 1960 29 0 0 chr9 26836775 26837020 -91025607 + L1HS LINE L1 5106 5350 -796 * 348 130 19 0 chr9 26837204 26837258 -91025369 - Charlie8 DNA MER1_type -1003 1414 1360 2108 97 4 0 chr9 26837361 26837640 -91024987 - AluSg SINE Alu -28 282 3 204 314 186 17 chr9 26838208 26838326 -91024301 + MIR3 SINE MIR 34 171 -37 227 304 169 30 chr9 26838485 26838722 -91023905 - L2 LINE L2 -1020 2294 2025 222 128 0 0 chr9 26939214 26939253 -90923374 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 420 264 28 9 chr9 26939265 26939371 -90923256 - L2 LINE L2 -14 3299 3192 191 373 144 5 chr9 26939428 26939629 -90922998 + L2 LINE L2 2612 2840 -474 207 368 11 0 chr9 26939722 26939817 -90922810 + L2 LINE L2 2946 3041 -231 2150 113 3 0 chr9 26940142 26940435 -90922192 - AluSg SINE Alu -16 294 1 22 0 0 0 chr9 26940444 26940466 -90922161 + AT_rich Low_complexity Low_complexity 1 22 0 367 273 49 55 chr9 26941016 26941199 -90921428 + L3 LINE CR1 1253 1434 -143 21 36 0 0 chr9 26941627 26941655 -90920972 + AT_rich Low_complexity Low_complexity 1 28 0 970 251 69 30 chr9 26943375 26944361 -90918266 + L1MC4 LINE L1 5803 6847 -1195 3600 252 56 28 chr9 26944514 26945664 -90916963 + L1MC4a LINE L1 6627 7808 0 355 310 50 50 chr9 26946034 26946176 -90916451 + L1M4 LINE L1 2337 2481 -3665 968 237 7 106 chr9 26946176 26946581 -90916046 - MLT1A1 LTR MaLR 0 365 1 355 310 50 50 chr9 26946581 26946680 -90915947 + L1M4 LINE L1 2480 2578 -3568 28 29 0 0 chr9 26947315 26947350 -90915277 + AT_rich Low_complexity Low_complexity 1 35 0 2075 114 0 7 chr9 26947528 26947825 -90914802 - AluSc SINE Alu -14 295 1 1923 265 74 23 chr9 26950811 26951653 -90910974 + L1ME3A LINE L1 5258 6122 -48 764 132 18 0 chr9 26951796 26951910 -90910717 - MSTD LTR MaLR 0 396 281 35 24 0 0 chr9 26952371 26952413 -90910214 + AT_rich Low_complexity Low_complexity 1 42 0 2249 95 7 0 chr9 26952773 26953079 -90909548 + AluY SINE Alu 1 308 -3 334 320 35 23 chr9 26954362 26954618 -90908009 - MIR SINE MIR -2 260 2 779 242 166 39 chr9 26955280 26955862 -90906765 - LTR50 LTR ERVL 0 795 43 1188 155 183 68 chr9 26955862 26956184 -90906443 + THE1C LTR MaLR 4 373 -2 207 0 0 0 chr9 26956270 26956293 -90906334 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 834 345 92 22 chr9 26956688 26956836 -90905791 - L2 LINE L2 -4 3309 3173 1021 205 149 13 chr9 26956836 26957138 -90905489 - MER2 DNA MER2_type 0 344 2 834 345 92 22 chr9 26957138 26957505 -90905122 - L2 LINE L2 -140 3173 2764 477 296 44 6 chr9 26957651 26957810 -90904817 + MLT1I LTR MaLR 243 407 -2 288 91 0 0 chr9 26958592 26958636 -90903991 + (TC)n Simple_repeat Simple_repeat 1 44 0 1365 176 15 27 chr9 26958640 26958901 -90903726 - AluJo SINE Alu -30 282 25 197 275 145 0 chr9 26958967 26959036 -90903591 + L2 LINE L2 3185 3263 -9 183 80 0 0 chr9 26959037 26959062 -90903565 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 191 265 176 59 chr9 26960791 26960927 -90901700 + MIR SINE MIR 1 152 -110 218 205 0 0 chr9 26961457 26961496 -90901131 + GA-rich Low_complexity Low_complexity 2 40 0 290 302 43 17 chr9 26962199 26962315 -90900312 - MIR SINE MIR -68 194 76 204 315 0 51 chr9 26962349 26962460 -90900167 - MIR SINE MIR -100 108 8 2377 59 0 3 chr9 26962642 26962945 -90899682 + AluY SINE Alu 1 302 -9 4987 204 20 9 chr9 26962981 26964052 -90898575 - Tigger6a DNA MER2_type 0 1083 1 21 0 0 0 chr9 26964145 26964166 -90898461 + AT_rich Low_complexity Low_complexity 1 21 0 788 201 0 0 chr9 26964224 26964363 -90898264 + FRAM SINE Alu 8 146 -30 383 294 8 25 chr9 26964691 26964810 -90897817 - MIR SINE MIR -61 201 85 491 355 150 24 chr9 26965731 26966924 -90895703 + L2 LINE L2 1430 2772 -542 185 311 144 0 chr9 26967219 26967309 -90895318 + L2 LINE L2 2950 3052 -261 1777 150 3 29 chr9 26967312 26967618 -90895009 + AluSx SINE Alu 1 298 -14 619 280 57 14 chr9 26970028 26970251 -90892376 + MIR SINE MIR 16 245 -17 307 271 10 21 chr9 26970467 26970563 -90892064 - MLT1H1 LTR MaLR -43 512 418 289 288 12 12 chr9 26970792 26970872 -90891755 - MLT1H1 LTR MaLR -374 181 102 1979 103 43 0 chr9 26970925 26971207 -90891420 + AluSg SINE Alu 5 298 -12 10031 79 3 2 chr9 26971439 26972790 -90889837 + L1P LINE L1 6 1357 -4789 2406 53 0 3 chr9 26973312 26973614 -90889013 + AluY SINE Alu 1 301 -10 286 257 64 46 chr9 26973704 26973813 -90888814 + MER110-int LTR ERV1 1790 1900 -2747 285 292 0 0 chr9 26973850 26973922 -90888705 + MER110-int LTR ERV1 2000 2071 -2576 1173 323 72 20 chr9 26974105 26974616 -90888011 + MER110-int LTR ERV1 2254 2791 -1856 305 159 16 0 chr9 26974958 26975021 -90887606 + GA-rich Low_complexity Low_complexity 3 66 0 858 213 96 106 chr9 26975137 26975734 -90886893 + LTR49 LTR ERV1 5 595 0 242 345 69 9 chr9 26975812 26975928 -90886699 - MER5A DNA MER1_type -64 125 3 1349 269 76 21 chr9 26976149 26976676 -90885951 + LTR38 LTR ERV1 1 556 0 24 0 0 0 chr9 26976913 26976937 -90885690 + AT_rich Low_complexity Low_complexity 1 24 0 901 202 30 103 chr9 26977708 26978010 -90884617 - MER67D LTR ERV1 -234 280 1 353 318 47 12 chr9 26979055 26979225 -90883402 + MIR SINE MIR 42 210 -52 369 43 0 0 chr9 26979630 26979677 -90882950 + (TG)n Simple_repeat Simple_repeat 1 47 0 1346 175 18 119 chr9 26980110 26980509 -90882118 - MLT1A1 LTR MaLR 0 365 13 698 205 16 0 chr9 26980527 26980654 -90881973 + Tigger1 DNA MER2_type 15 143 -2275 1024 163 48 14 chr9 26980657 26980866 -90881761 + Tigger1 DNA MER2_type 2203 2418 0 22 56 0 0 chr9 26981362 26981398 -90881229 + AT_rich Low_complexity Low_complexity 1 36 0 199 314 43 14 chr9 26982515 26982585 -90880042 + MER5B DNA MER1_type 3 74 -104 6995 32 0 2 chr9 26982883 26983719 -90878908 - L1PA3 LINE L1 0 6155 5322 280 77 0 0 chr9 26983697 26983736 -90878891 + L1P LINE L1 2680 2718 -3428 * 393 264 0 0 chr9 26983833 26983920 -90878707 + MER81 DNA DNA 1 87 -27 261 182 45 27 chr9 26984826 26984936 -90877691 + (CATATA)n Simple_repeat Simple_repeat 2 113 0 539 279 110 43 chr9 26984969 26985154 -90877473 - L1ME LINE L1 -519 5645 5474 222 37 0 0 chr9 26985154 26985181 -90877446 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2254 92 0 0 chr9 26985184 26985476 -90877151 - AluSg SINE Alu -18 292 1 539 279 110 43 chr9 26985476 26985928 -90876699 - L1ME LINE L1 -691 5473 4962 2152 201 50 7 chr9 26985928 26986371 -90876256 + MLT1C LTR MaLR 1 462 -5 1972 151 22 22 chr9 26986431 26986795 -90875832 - THE1B LTR MaLR 0 364 1 331 300 15 10 chr9 26987118 26987318 -90875309 - L1ME LINE L1 -1542 4604 4404 21 36 0 0 chr9 26988733 26988761 -90873866 + AT_rich Low_complexity Low_complexity 1 28 0 35 54 0 0 chr9 26988961 26989017 -90873610 + AT_rich Low_complexity Low_complexity 1 56 0 260 328 46 30 chr9 26989568 26989699 -90872928 - L3b LINE CR1 -4 1579 1447 26 30 0 0 chr9 26990059 26990092 -90872535 + AT_rich Low_complexity Low_complexity 1 33 0 198 403 14 14 chr9 26990216 26990360 -90872267 + L2 LINE L2 2307 2450 -864 491 315 107 0 chr9 26990391 26990569 -90872058 - MIR SINE MIR -38 224 28 381 258 177 0 chr9 26990788 26990912 -90871715 - MIR SINE MIR -6 256 111 24 0 0 0 chr9 26992262 26992286 -90870341 + AT_rich Low_complexity Low_complexity 1 24 0 330 266 138 9 chr9 26992994 26993103 -90869524 - L2 LINE L2 -24 3289 3167 284 129 71 24 chr9 26995656 26995741 -90866886 + CT-rich Low_complexity Low_complexity 3 91 0 1286 222 116 6 chr9 26995907 26996218 -90866409 + MLT1B-int LTR MaLR 955 1299 -72 559 337 64 7 chr9 26996192 26996388 -90866239 - L1MDa LINE L1 -5735 805 431 * 297 225 67 22 chr9 26996393 26996482 -90866145 - L1MDa LINE L1 -6069 471 379 * 355 196 11 22 chr9 26996479 26996571 -90866056 + MLT1B-int LTR MaLR 1644 1734 -1 1522 209 59 17 chr9 26996572 26996927 -90865700 + MLT1B LTR MaLR 1 370 -20 6211 243 81 31 chr9 26996939 26999278 -90863349 + L1MDa LINE L1 123 2718 -3822 1065 278 58 14 chr9 26999398 26999847 -90862780 + L1MDa LINE L1 3325 3753 -2787 1411 184 26 43 chr9 26999847 27000151 -90862476 - AluJo SINE Alu -13 299 1 1065 278 58 14 chr9 27000151 27000164 -90862463 + L1MDa LINE L1 3753 3764 -2776 354 23 0 0 chr9 27000164 27000207 -90862420 + (CA)n Simple_repeat Simple_repeat 2 44 0 1065 278 58 14 chr9 27000207 27000368 -90862259 + L1MDa LINE L1 3764 3976 -2564 822 312 47 64 chr9 27000383 27000835 -90861792 + L1M2a LINE L1 1 444 -6724 * 3158 266 84 31 chr9 27000809 27002760 -90859867 + L1M2a LINE L1 1568 3222 -3947 2882 158 20 2 chr9 27002786 27003285 -90859342 + L1PA8 LINE L1 1 508 -5367 23262 148 10 70 chr9 27003285 27009362 -90853265 + L1PA8 LINE L1 771 6487 0 3023 257 88 6 chr9 27009357 27010454 -90852173 + L1M2a LINE L1 3223 4409 -2758 * 269 118 0 227 chr9 27010455 27010565 -90852062 + MLT2C2 LTR ERVL 407 464 0 289 327 59 56 chr9 27010575 27010881 -90851746 - HAL1 LINE L1 -952 1555 1249 388 248 32 89 chr9 27010941 27011098 -90851529 - MLT1I LTR MaLR -235 174 27 468 310 105 44 chr9 27011458 27011868 -90850759 - HAL1 LINE L1 -2044 463 29 29 47 0 0 chr9 27012135 27012178 -90850449 + AT_rich Low_complexity Low_complexity 1 43 0 217 341 80 0 chr9 27012239 27012327 -90850300 + L2 LINE L2 3185 3279 -34 551 313 185 40 chr9 27012708 27012828 -90849799 - L2 LINE L2 -5 3308 3207 3681 109 79 0 chr9 27012828 27013386 -90849241 - LTR43 LTR ERV1 0 602 1 551 313 185 40 chr9 27013386 27013781 -90848846 - L2 LINE L2 -106 3207 2722 305 293 29 69 chr9 27014081 27014255 -90848372 + L1M2a LINE L1 4862 5028 -2139 514 237 258 42 chr9 27014330 27014385 -90848242 + MLT1E1 LTR MaLR 3 45 -609 315 0 0 0 chr9 27014385 27014420 -90848207 + (CA)n Simple_repeat Simple_repeat 2 36 0 514 237 258 42 chr9 27014420 27014554 -90848073 + MLT1E1 LTR MaLR 45 233 -421 478 184 10 0 chr9 27014560 27014658 -90847969 + MLT1E3 LTR MaLR 526 624 0 191 320 148 23 chr9 27014941 27015197 -90847430 + L2 LINE L2 3020 3307 -6 2006 184 6 0 chr9 27017870 27018234 -90844393 - MER47A DNA MER2_type 0 366 1 215 173 19 0 chr9 27018911 27018963 -90843664 + (CA)n Simple_repeat Simple_repeat 2 54 0 230 266 101 46 chr9 27020075 27020184 -90842443 + MIR SINE MIR 110 224 -38 424 248 39 39 chr9 27020603 27020756 -90841871 - MER5A DNA MER1_type 0 189 37 321 301 46 64 chr9 27020605 27020778 -90841849 + MER5A DNA MER1_type 17 186 -3 * 23 0 0 0 chr9 27021948 27021971 -90840656 + AT_rich Low_complexity Low_complexity 1 23 0 300 263 64 52 chr9 27022067 27022267 -90840360 + MIR SINE MIR 15 221 -41 309 51 0 0 chr9 27022576 27022615 -90840012 + (CA)n Simple_repeat Simple_repeat 2 40 0 278 146 0 0 chr9 27024152 27024193 -90838434 - tRNA-Lys-AAG tRNA tRNA -34 42 2 413 221 170 78 chr9 27024430 27024765 -90837862 + L1ME3A LINE L1 5735 6100 -70 2232 105 0 7 chr9 27025136 27025431 -90837196 - AluSg SINE Alu -17 293 1 258 318 39 84 chr9 27025460 27025614 -90837013 + L2 LINE L2 3124 3270 -2 239 48 0 0 chr9 27025859 27025901 -90836726 - LTR66 LTR ERVL -171 439 398 239 48 0 0 chr9 27025869 27025911 -90836716 + LTR66 LTR ERVL 398 439 -171 327 311 0 0 chr9 27025919 27026009 -90836618 + L1MC4 LINE L1 6614 6703 -1339 225 154 0 0 chr9 27026009 27026048 -90836579 + (TG)n Simple_repeat Simple_repeat 1 39 0 429 70 0 0 chr9 27026048 27026105 -90836522 + (TA)n Simple_repeat Simple_repeat 1 57 0 27 49 0 0 chr9 27028198 27028239 -90834388 + AT_rich Low_complexity Low_complexity 1 41 0 357 295 84 54 chr9 27028597 27028858 -90833769 - L1MDa LINE L1 -4702 1838 1570 1196 248 114 72 chr9 27028892 27029460 -90833167 - MLT1E2 LTR MaLR -31 594 2 1259 264 88 35 chr9 27029466 27030094 -90832533 - L1MDa LINE L1 -5105 1616 956 472 300 8 0 chr9 27030108 27030238 -90832389 - L2 LINE L2 -947 2367 2237 835 215 58 6 chr9 27030373 27030545 -90832082 + MER5A DNA MER1_type 7 187 -2 211 309 41 31 chr9 27030591 27030688 -90831939 - L2 LINE L2 -243 3029 2932 1468 111 214 12 chr9 27031878 27032130 -90830497 - AluSg1 SINE Alu -6 303 1 333 318 97 41 chr9 27034070 27034302 -90828325 + MLT1L LTR MaLR 201 465 -150 1724 138 34 18 chr9 27034302 27034629 -90827998 + L1MA9 LINE L1 5979 6310 -2 333 318 97 41 chr9 27034629 27034789 -90827838 + MLT1L LTR MaLR 465 615 0 1398 245 50 67 chr9 27035602 27036157 -90826470 - L1ME3 LINE L1 -14 6148 5603 577 258 0 7 chr9 27036209 27036360 -90826267 - L1ME3 LINE L1 -1292 4854 4705 439 240 13 20 chr9 27036439 27036589 -90826038 - L1ME3 LINE L1 -1567 4579 4431 2613 45 0 0 chr9 27036604 27036915 -90825712 - AluY SINE Alu 0 311 1 334 279 81 54 chr9 27036923 27037145 -90825482 - L1ME3 LINE L1 -1979 4167 3940 597 329 35 16 chr9 27037200 27037513 -90825114 + L1MEc LINE L1 92 410 -5986 1579 245 96 10 chr9 27037597 27038087 -90824540 + LTR48B LTR ERV1 108 639 -5 1000 219 76 106 chr9 27038108 27038159 -90824468 - MLT1A2 LTR MaLR -5 369 318 1969 161 21 15 chr9 27038159 27038494 -90824133 + MER1B DNA MER1_type 1 337 0 1000 219 76 106 chr9 27038494 27038799 -90823828 - MLT1A2 LTR MaLR -56 318 24 3870 222 19 9 chr9 27040236 27041243 -90821384 + L1 LINE L1 2861 3877 -2269 5693 138 196 9 chr9 27041363 27042477 -90820150 - L1PBa LINE L1 -4903 1960 639 1100 190 0 0 chr9 27042474 27042674 -90819953 - L1PBa LINE L1 -6661 202 3 * 22 35 0 0 chr9 27043451 27043480 -90819147 + AT_rich Low_complexity Low_complexity 1 29 0 2850 151 86 10 chr9 27044498 27045201 -90817426 - L1PBa LINE L1 -3733 3129 2372 1635 197 45 28 chr9 27045681 27045831 -90816796 + L1M1 LINE L1 2890 3036 -4529 1447 164 80 52 chr9 27045831 27046196 -90816431 - THE1C LTR MaLR 0 375 1 1635 197 45 28 chr9 27046196 27046761 -90815866 + L1M1 LINE L1 3036 3939 -3626 9431 130 30 6 chr9 27046861 27048287 -90814340 - THE1B-int LTR MaLR -120 1460 1 1942 175 11 16 chr9 27048287 27048653 -90813974 - THE1B LTR MaLR 0 364 1 1929 174 0 0 chr9 27049243 27049554 -90813073 - AluJo SINE Alu -1 311 1 1961 174 93 53 chr9 27049664 27050056 -90812571 - MER67D LTR ERV1 0 514 96 1616 122 122 7 chr9 27050056 27050327 -90812300 + AluSx SINE Alu 1 302 0 1961 174 93 53 chr9 27050327 27050428 -90812199 - MER67D LTR ERV1 -418 96 1 302 312 136 7 chr9 27050510 27050664 -90811963 - MIR SINE MIR -84 178 5 338 313 68 0 chr9 27050982 27051145 -90811482 - MIR SINE MIR 0 262 89 368 258 0 10 chr9 27051291 27051388 -90811239 + MER34 LTR ERV1 1 96 -446 1598 227 91 28 chr9 27051393 27051856 -90810771 + LTR48B LTR ERV1 151 642 -2 24 85 0 0 chr9 27052048 27052107 -90810520 + AT_rich Low_complexity Low_complexity 1 59 0 622 237 131 44 chr9 27052271 27052773 -90809854 + LTR48 LTR ERV1 157 787 0 210 71 0 0 chr9 27052874 27052902 -90809725 + (A)n Simple_repeat Simple_repeat 1 28 0 299 289 22 0 chr9 27053121 27053211 -90809416 + MLT1I LTR MaLR 19 110 -299 388 254 192 8 chr9 27053291 27053421 -90809206 + MER5A DNA MER1_type 30 183 -6 548 240 101 29 chr9 27053443 27053651 -90808976 + MLT1I LTR MaLR 186 408 -1 379 281 79 0 chr9 27054613 27054727 -90807900 - L2 LINE L2 0 3313 3191 4887 89 43 98 chr9 27055665 27056539 -90806088 - LTR12 LTR ERV1 0 826 1 560 306 81 67 chr9 27057205 27057502 -90805125 - LTR16C LTR ERVL 0 491 191 6719 70 3 26 chr9 27057512 27058677 -90803950 - L1PA7 LINE L1 0 6154 5013 2319 95 0 0 chr9 27058677 27058972 -90803655 - AluY SINE Alu -14 297 3 6719 70 3 26 chr9 27058972 27059495 -90803132 - L1PA7 LINE L1 -1141 5013 4479 995 188 53 41 chr9 27059842 27060161 -90802466 - MER33 DNA MER1_type -1 323 1 1420 263 126 17 chr9 27060527 27060994 -90801633 + MLT1F LTR MaLR 25 542 0 428 273 50 25 chr9 27062178 27062339 -90800288 - MIR SINE MIR -90 172 8 1597 52 10 0 chr9 27062481 27062674 -90799953 + AluY SINE Alu 99 293 -18 2093 130 3 0 chr9 27063208 27063508 -90799119 - AluJb SINE Alu -7 305 5 377 302 37 73 chr9 27064503 27064831 -90797796 + MLT1H LTR MaLR 53 368 -181 1838 107 0 0 chr9 27065050 27065313 -90797314 - AluSx SINE Alu 0 310 48 21 0 0 0 chr9 27065382 27065403 -90797224 + AT_rich Low_complexity Low_complexity 1 21 0 583 319 117 36 chr9 27066578 27066938 -90795689 - L2 LINE L2 -5 3308 2920 233 212 106 15 chr9 27067228 27067294 -90795333 - LTR33A LTR ERVL 0 523 452 229 240 106 87 chr9 27067355 27067459 -90795168 - MLT2E LTR ERVL -491 137 32 2611 310 74 23 chr9 27067894 27068009 -90794618 - ERVL LTR ERVL -431 5333 5225 1973 176 12 6 chr9 27068009 27068355 -90794272 + MER7A DNA MER2_type 1 346 0 2611 310 74 23 chr9 27068355 27069371 -90793256 - ERVL LTR ERVL -539 5225 4144 1944 181 109 8 chr9 27069622 27070097 -90792530 - L1MA9 LINE L1 -1 6311 5789 6400 141 34 13 chr9 27070106 27071564 -90791063 - L1MA2 LINE L1 0 7723 6243 981 198 28 4 chr9 27071556 27071803 -90790824 - L1MA2 LINE L1 -2972 4593 4341 * 2847 131 27 17 chr9 27071837 27072317 -90790310 - L1PA13 LINE L1 0 6163 5679 847 76 8 0 chr9 27072317 27072435 -90790192 + L1P4 LINE L1 5609 5727 -436 * 17972 171 67 29 chr9 27072432 27074181 -90788446 - L1MA2 LINE L1 -3215 4350 2669 1966 122 15 0 chr9 27074181 27074452 -90788175 + AluSx SINE Alu 2 276 -36 17972 171 67 29 chr9 27074452 27076874 -90785753 - L1MA2 LINE L1 -4896 2669 15 3791 178 42 11 chr9 27076890 27078170 -90784457 - L1M2 LINE L1 -514 5798 4486 1799 170 3 3 chr9 27078174 27078462 -90784165 - AluSx SINE Alu -24 288 1 14451 162 41 14 chr9 27078847 27081493 -90781134 - Tigger2 DNA MER2_type 0 2718 2 213 180 16 16 chr9 27081499 27081560 -90781067 + (TA)n Simple_repeat Simple_repeat 1 61 0 1296 314 55 49 chr9 27081560 27082271 -90780356 - ERVL LTR ERVL -2180 3474 2760 2343 81 7 3 chr9 27083994 27084304 -90778323 + AluY SINE Alu 1 311 0 180 152 0 0 chr9 27084596 27084629 -90777998 + (TAA)n Simple_repeat Simple_repeat 1 33 0 26 0 0 0 chr9 27084778 27084804 -90777823 + AT_rich Low_complexity Low_complexity 1 26 0 583 349 56 45 chr9 27085338 27085716 -90776911 - L2 LINE L2 -1 3271 2890 228 333 42 33 chr9 27086238 27086358 -90776269 - MIR SINE MIR -10 252 132 22 35 0 0 chr9 27087159 27087188 -90775439 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr9 27089223 27089245 -90773382 + AT_rich Low_complexity Low_complexity 1 22 0 328 224 82 12 chr9 27089791 27089876 -90772751 - MER91C DNA MER1_type -1 139 49 263 284 71 57 chr9 27090197 27090338 -90772289 - MIR SINE MIR -109 153 11 2602 165 8 4 chr9 27091258 27091731 -90770896 + L1MA5 LINE L1 5826 6300 0 243 170 0 0 chr9 27093377 27093424 -90769203 + A-rich Low_complexity Low_complexity 1 47 0 39 22 0 0 chr9 27094277 27094323 -90768304 + AT_rich Low_complexity Low_complexity 1 46 0 967 298 44 16 chr9 27094681 27095044 -90767583 + L1MEd LINE L1 11 383 -5736 517 311 34 42 chr9 27095155 27095512 -90767115 + L1MEd LINE L1 532 885 -5234 585 134 21 10 chr9 27095613 27095710 -90766917 + MER4A LTR ERV1 1 98 -566 1842 139 6 24 chr9 27095710 27096061 -90766566 + MER4A LTR ERV1 261 664 0 7796 123 94 49 chr9 27096064 27098393 -90764234 + MER4A-int LTR ERV1 1 2486 -4112 1159 201 75 0 chr9 27098397 27098636 -90763991 - LTR8 LTR ERV1 -434 257 1 2896 158 121 59 chr9 27098636 27098694 -90763933 + MER4A-int LTR ERV1 2737 2790 -3808 193 28 0 56 chr9 27098694 27098730 -90763897 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 2896 158 121 59 chr9 27098730 27099572 -90763055 + MER4A-int LTR ERV1 2790 3693 -2905 * 15023 112 44 17 chr9 27099555 27102149 -90760478 + MER4A-int LTR ERV1 3838 6593 -5 585 143 0 0 chr9 27102163 27102254 -90760373 + MER4A LTR ERV1 8 98 -566 1892 131 3 23 chr9 27102254 27102596 -90760031 + MER4A LTR ERV1 263 664 0 505 270 82 30 chr9 27102597 27102830 -90759797 + L1MEd LINE L1 985 1229 -4890 1488 192 0 55 chr9 27102874 27103182 -90759445 - AluJo SINE Alu -21 291 1 2093 77 7 0 chr9 27103468 27103754 -90758873 - L1PA7 LINE L1 -3 6151 5864 2188 62 3 0 chr9 27103754 27104042 -90758585 + L1P LINE L1 4369 4657 -1489 183 260 0 20 chr9 27105093 27105143 -90757484 + MIR SINE MIR 100 148 -114 289 371 51 69 chr9 27105227 27105620 -90757007 + L2 LINE L2 2809 3194 -78 181 315 174 0 chr9 27106968 27107060 -90755567 + L2 LINE L2 3156 3263 -9 249 250 0 0 chr9 27107171 27107223 -90755404 + MER58A DNA MER1_type 28 79 -28 487 248 9 0 chr9 27107264 27107373 -90755254 + MER58A DNA MER1_type 82 191 -33 403 332 104 5 chr9 27107612 27107805 -90754822 + MIR SINE MIR 48 259 -3 22 0 0 0 chr9 27108000 27108022 -90754605 + AT_rich Low_complexity Low_complexity 1 22 0 1306 227 82 43 chr9 27108656 27109096 -90753531 + MSTB2 LTR MaLR 1 457 0 23 33 0 0 chr9 27109139 27109169 -90753458 + AT_rich Low_complexity Low_complexity 1 30 0 891 240 47 11 chr9 27109355 27109630 -90752997 + HAL1 LINE L1 2036 2320 -187 1557 185 39 13 chr9 27109632 27109940 -90752687 + L1PB4 LINE L1 5841 6156 0 226 152 0 0 chr9 27109948 27109994 -90752633 + HAL1 LINE L1 2306 2351 -156 1339 200 0 8 chr9 27110095 27110340 -90752287 + AluJb SINE Alu 4 246 -66 189 74 0 0 chr9 27110363 27110390 -90752237 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 22 35 0 0 chr9 27110419 27110448 -90752179 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr9 27111042 27111069 -90751558 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr9 27111718 27111746 -90750881 + AT_rich Low_complexity Low_complexity 1 28 0 221 339 60 120 chr9 27112706 27113157 -90749470 + L2 LINE L2 2826 3249 -23 580 242 16 0 chr9 27113479 27113603 -90749024 - FLAM_A SINE Alu -6 127 2 2214 104 0 0 chr9 27113609 27113906 -90748721 - AluY SINE Alu -14 297 1 606 239 0 22 chr9 27113927 27114065 -90748562 - FLAM_C SINE Alu -8 135 1 258 331 47 31 chr9 27114208 27114335 -90748292 + L2 LINE L2 3184 3312 -1 1623 93 161 4 chr9 27116091 27116339 -90746288 - AluSg1 SINE Alu -20 289 3 268 204 0 68 chr9 27116845 27116923 -90745704 + T-rich Low_complexity Low_complexity 1 83 -13 3049 169 31 44 chr9 27116923 27117116 -90745511 - L1PB3 LINE L1 -1 6153 5959 1605 171 190 11 chr9 27117116 27117479 -90745148 - MSTA LTR MaLR 0 428 1 8288 162 11 55 chr9 27117479 27119129 -90743498 - MSTA-int LTR MaLR 0 1580 3 1746 171 140 11 chr9 27119131 27119510 -90743117 - MSTA LTR MaLR 0 428 1 3049 169 31 44 chr9 27119510 27119992 -90742635 - L1PB3 LINE L1 -195 5959 5483 268 204 0 68 chr9 27119992 27120016 -90742611 + T-rich Low_complexity Low_complexity 83 96 0 6965 141 22 24 chr9 27120395 27121807 -90740820 - L1MA2 LINE L1 0 6304 4902 2900 115 9 0 chr9 27121807 27122241 -90740386 - L1PB2 LINE L1 -2 6149 5712 6965 141 22 24 chr9 27122241 27123015 -90739612 - L1MA2 LINE L1 -1402 4902 4128 31 26 0 0 chr9 27123404 27123442 -90739185 + AT_rich Low_complexity Low_complexity 1 38 0 216 356 9 17 chr9 27123648 27123763 -90738864 - MIR SINE MIR 0 262 149 278 300 97 3 chr9 27125092 27125231 -90737396 + MIR SINE MIR 6 152 -62 473 264 58 80 chr9 27125427 27125753 -90736874 - HAL1b LINE L1 -814 534 216 560 247 0 92 chr9 27125870 27126097 -90736530 + L1MC4 LINE L1 7816 8021 -21 2114 119 0 13 chr9 27126105 27126417 -90736210 - AluSc SINE Alu -1 308 1 302 341 47 0 chr9 27126518 27126647 -90735980 - MIR3 SINE MIR -14 194 60 580 278 98 0 chr9 27126735 27126908 -90735719 - MER58C DNA MER1_type 0 215 26 3191 222 65 42 chr9 27127123 27127826 -90734801 + L1MDb LINE L1 6 691 -5715 2142 130 16 0 chr9 27127826 27128133 -90734494 + AluSx SINE Alu 1 312 0 3191 222 65 42 chr9 27128133 27128988 -90733639 + L1MDb LINE L1 691 1732 -4674 1563 164 44 11 chr9 27128988 27129284 -90733343 + AluJb SINE Alu 1 305 0 3191 222 65 42 chr9 27129284 27129553 -90733074 + L1MDb LINE L1 1732 1993 -4413 520 258 65 41 chr9 27129561 27129852 -90732775 + L1MDb LINE L1 2071 2368 -4038 230 225 0 0 chr9 27129855 27129895 -90732732 - L1MD2 LINE L1 -297 6062 6023 * 595 236 48 36 chr9 27129894 27130144 -90732483 - L1M4 LINE L1 -1816 4330 4078 333 274 62 18 chr9 27130469 27130582 -90732045 - L2 LINE L2 -7 3306 3189 3589 179 38 95 chr9 27130703 27131772 -90730855 - L1MA9 LINE L1 -33 6279 5272 21 0 0 0 chr9 27132171 27132192 -90730435 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 27133082 27133110 -90729517 + AT_rich Low_complexity Low_complexity 1 28 0 204 345 103 9 chr9 27133926 27134042 -90728585 + L2 LINE L2 3187 3313 0 24 0 0 0 chr9 27134580 27134604 -90728023 + AT_rich Low_complexity Low_complexity 1 24 0 180 306 16 0 chr9 27134685 27134747 -90727880 + MIR SINE MIR 92 154 -108 2406 61 0 6 chr9 27134794 27135106 -90727521 + AluY SINE Alu 1 310 -1 1629 208 17 0 chr9 27135285 27135583 -90727044 - AluJb SINE Alu -9 303 1 585 79 83 0 chr9 27135628 27135897 -90726730 + (TA)n Simple_repeat Simple_repeat 1 291 0 338 101 76 8 chr9 27135908 27136027 -90726600 + (TA)n Simple_repeat Simple_repeat 1 127 0 4610 99 5 0 chr9 27136058 27136706 -90725921 + L1PA13 LINE L1 5494 6144 -19 191 267 151 12 chr9 27136745 27136831 -90725796 + MIR SINE MIR 164 261 -1 29 47 0 0 chr9 27137199 27137242 -90725385 + AT_rich Low_complexity Low_complexity 1 43 0 202 189 0 38 chr9 27138123 27138176 -90724451 + A-rich Low_complexity Low_complexity 6 56 0 319 301 26 59 chr9 27138187 27138340 -90724287 - MIR SINE MIR -67 195 48 219 302 135 24 chr9 27138391 27138517 -90724110 - L2 LINE L2 -38 3234 3095 347 363 119 12 chr9 27138731 27138891 -90723736 - MIR SINE MIR -65 197 21 290 276 58 35 chr9 27139411 27139498 -90723129 - L2 LINE L2 -37 3235 3147 408 309 56 8 chr9 27139995 27140121 -90722506 - L2 LINE L2 -12 3260 3129 425 289 0 0 chr9 27140253 27140350 -90722277 - MER5A DNA MER1_type -83 106 10 274 254 70 81 chr9 27140566 27140751 -90721876 - MER5A DNA MER1_type 0 189 7 203 360 122 45 chr9 27140776 27141192 -90721435 - L2 LINE L2 -569 2745 2363 2120 145 14 19 chr9 27141192 27141558 -90721069 - THE1B LTR MaLR 0 364 1 10947 102 28 8 chr9 27141560 27143107 -90719520 - THE1B-int LTR MaLR -2 1578 1 2275 139 8 16 chr9 27143107 27143474 -90719153 - THE1B LTR MaLR 0 364 1 203 360 122 45 chr9 27143474 27143519 -90719108 - L2 LINE L2 -950 2364 2244 2119 105 0 41 chr9 27143764 27144078 -90718549 + AluSq SINE Alu 1 301 -12 464 274 156 14 chr9 27144670 27144958 -90717669 + L1ME4a LINE L1 5746 6074 -47 798 226 54 5 chr9 27145133 27145319 -90717308 - MER72 LTR ERV1 -527 195 1 2602 138 24 0 chr9 27146283 27146697 -90715930 - MSTA LTR MaLR -4 424 1 725 271 10 10 chr9 27147020 27147212 -90715415 - MIR SINE MIR 0 262 71 180 365 81 14 chr9 27147219 27147367 -90715260 - MIR SINE MIR -57 205 48 2353 81 3 0 chr9 27147430 27147728 -90714899 + AluY SINE Alu 1 299 -12 3753 155 58 9 chr9 27147747 27148431 -90714196 - L1PA16 LINE L1 -9 6157 5440 3889 189 52 8 chr9 27148426 27149393 -90713234 + L1P LINE L1 4411 5420 -743 289 364 91 0 chr9 27150357 27150544 -90712083 - MIR SINE MIR 0 262 59 180 295 16 16 chr9 27150714 27150775 -90711852 - MIR SINE MIR -2 260 200 362 306 33 33 chr9 27150959 27151142 -90711485 + MLT1J2 LTR MaLR 266 448 -2 306 311 230 0 chr9 27151142 27151303 -90711324 - MIR SINE MIR -59 203 6 868 255 53 24 chr9 27152151 27152398 -90710229 - MIR SINE MIR -8 254 1 1584 192 15 29 chr9 27152741 27153098 -90709529 - MLT1A2 LTR MaLR 0 467 23 2209 108 3 0 chr9 27153315 27153611 -90709016 + AluSx SINE Alu 1 297 -15 329 317 80 43 chr9 27153711 27153922 -90708705 + MIR SINE MIR 45 262 0 242 240 20 0 chr9 27153957 27154007 -90708620 - L2 LINE L2 -5 3308 3258 789 322 111 23 chr9 27154264 27154662 -90707965 + L2 LINE L2 2266 2698 -616 200 163 23 0 chr9 27154841 27154884 -90707743 + (TA)n Simple_repeat Simple_repeat 1 44 0 549 110 0 0 chr9 27154922 27155004 -90707623 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 410 271 196 0 chr9 27156654 27156787 -90705840 + MIR SINE MIR 103 261 -1 299 317 93 33 chr9 27157593 27157776 -90704851 + L2 LINE L2 2651 2844 -470 302 247 79 0 chr9 27157800 27157889 -90704738 + MIR SINE MIR 166 261 -1 1214 55 0 7 chr9 27158037 27158064 -90704563 + L1P LINE L1 4194 4220 -1926 7336 42 0 7 chr9 27158064 27159709 -90702918 - L1PA5 LINE L1 -1 6153 4515 1214 55 0 7 chr9 27159709 27159856 -90702771 + L1P LINE L1 4220 4361 -1785 290 349 37 0 chr9 27159869 27159978 -90702649 + L2 LINE L2 3191 3303 -10 206 326 0 0 chr9 27160076 27160122 -90702505 - MIR SINE MIR -129 79 34 321 26 0 0 chr9 27160128 27160166 -90702461 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 230 433 39 0 chr9 27160279 27160406 -90702221 - L2 LINE L2 -215 3057 2926 1409 149 98 0 chr9 27162276 27162551 -90700076 + L1MB4 LINE L1 5869 6170 -10 271 336 19 28 chr9 27162754 27162861 -90699766 - L2 LINE L2 -1 3312 3207 180 290 0 32 chr9 27163676 27163738 -90698889 + L3b LINE CR1 1281 1340 -243 27 62 0 0 chr9 27163757 27163805 -90698822 + AT_rich Low_complexity Low_complexity 1 48 0 1526 253 107 36 chr9 27164179 27164769 -90697858 - LTR48B LTR ERV1 -6 638 7 27 49 0 0 chr9 27165027 27165068 -90697559 + AT_rich Low_complexity Low_complexity 1 41 0 297 358 18 17 chr9 27166288 27166440 -90696187 + MER5A DNA MER1_type 20 183 -6 24 53 0 0 chr9 27167245 27167283 -90695344 + AT_rich Low_complexity Low_complexity 1 38 0 605 348 62 51 chr9 27167419 27168315 -90694312 + L1M4 LINE L1 2128 3033 -3113 640 298 59 26 chr9 27168335 27168607 -90694020 + L1MB1 LINE L1 173 453 -5860 10891 230 58 32 chr9 27169070 27170374 -90692253 + L1MB1 LINE L1 801 2069 -4335 2398 63 0 7 chr9 27170374 27170677 -90691950 - AluY SINE Alu -10 301 1 10891 230 58 32 chr9 27170677 27171382 -90691245 + L1MB1 LINE L1 2069 2754 -3650 1178 150 55 9 chr9 27171382 27171602 -90691025 - MER30 DNA MER1_type 0 230 1 10891 230 58 32 chr9 27171602 27174307 -90688320 + L1MB1 LINE L1 2754 5570 -834 2021 161 0 0 chr9 27174307 27174618 -90688009 + AluSx SINE Alu 1 311 -1 10891 230 58 32 chr9 27174618 27175473 -90687154 + L1MB1 LINE L1 5570 6401 -3 336 361 110 5 chr9 27176821 27177040 -90685587 - MIR SINE MIR -2 260 19 23945 42 6 4 chr9 27177359 27181154 -90681473 - L1PA5 LINE L1 -3 6151 2346 234 392 20 0 chr9 27183728 27183830 -90678797 - MIR SINE MIR -112 150 47 481 298 148 30 chr9 27183853 27184799 -90677828 + L1MEc LINE L1 109 1139 -5066 1289 114 0 21 chr9 27184853 27185046 -90677581 + MER1B DNA MER1_type 87 275 -64 1182 293 46 27 chr9 27185069 27185697 -90676930 + L1MEc LINE L1 1214 1853 -4543 240 333 39 16 chr9 27186654 27186783 -90675844 + L1ME2 LINE L1 5574 5705 -2103 381 341 32 0 chr9 27186791 27186917 -90675710 + L3 LINE CR1 1437 1566 -11 202 273 30 0 chr9 27186946 27187012 -90675615 + (CAG)n Simple_repeat Simple_repeat 2 69 0 793 263 93 37 chr9 27187383 27187737 -90674890 - MLT1A2 LTR MaLR 0 374 1 2802 121 17 0 chr9 27187866 27188272 -90674355 + MLT2A2 LTR ERVL 1 413 -40 261 0 0 0 chr9 27188284 27188313 -90674314 + (CA)n Simple_repeat Simple_repeat 2 30 0 489 184 0 20 chr9 27188338 27188485 -90674142 + (TA)n Simple_repeat Simple_repeat 1 144 0 306 275 11 11 chr9 27188487 27188578 -90674049 + L1MC4 LINE L1 6612 6702 -1340 375 71 24 106 chr9 27188581 27188625 -90674002 + MLT2A2 LTR ERVL 376 411 -42 390 55 0 41 chr9 27188625 27188698 -90673929 + (TA)n Simple_repeat Simple_repeat 2 71 0 375 71 24 106 chr9 27188698 27188738 -90673889 + MLT2A2 LTR ERVL 411 453 0 390 294 75 10 chr9 27189624 27189825 -90672802 + L1MC4a LINE L1 5617 5830 -1978 317 297 40 84 chr9 27189874 27190123 -90672504 + L1ME2 LINE L1 5854 6091 -73 426 276 112 0 chr9 27190127 27190243 -90672384 - FLAM_A SINE Alu -3 130 2 236 94 0 0 chr9 27190246 27190278 -90672349 + HsTC2 DNA Tc2 32 63 -1835 393 168 168 0 chr9 27190335 27190442 -90672185 + HsTC2 DNA Tc2 1656 1780 -118 1041 276 74 35 chr9 27190452 27191032 -90671595 + L1MEc LINE L1 1859 2461 -3935 2005 275 98 19 chr9 27191133 27192116 -90670511 + L1MEc LINE L1 3550 4609 -1606 17675 168 24 23 chr9 27192118 27192390 -90670237 - L1MA1 LINE L1 0 7721 7451 1995 75 0 11 chr9 27192390 27192656 -90669971 - AluY SINE Alu 0 311 49 2015 88 0 0 chr9 27192657 27192919 -90669708 - AluY SINE Alu -49 262 1 17675 168 24 23 chr9 27192919 27194289 -90668338 - L1MA1 LINE L1 -270 7451 6084 246 95 0 0 chr9 27194289 27194331 -90668296 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 17675 168 24 23 chr9 27194331 27198617 -90664010 - L1MA1 LINE L1 -1637 6084 1745 207 0 0 0 chr9 27198617 27198640 -90663987 + (TC)n Simple_repeat Simple_repeat 2 24 0 17675 168 24 23 chr9 27198640 27200373 -90662254 - L1MA1 LINE L1 -5976 1745 16 461 330 53 47 chr9 27200429 27200750 -90661877 - L1ME LINE L1 -346 5775 5453 467 246 99 0 chr9 27201552 27201694 -90660933 + MER69A DNA AcHobo 16 171 -6 306 330 28 0 chr9 27201972 27202081 -90660546 - MIR3 SINE MIR -10 198 87 328 313 144 6 chr9 27202755 27202915 -90659712 + MIR SINE MIR 10 191 -71 495 335 69 0 chr9 27203999 27204187 -90658440 + MIR SINE MIR 29 229 -33 6407 194 30 15 chr9 27205423 27205552 -90657075 + L1M2 LINE L1 2512 2638 -4210 1528 153 80 52 chr9 27205552 27205917 -90656710 - THE1C LTR MaLR 0 375 1 6407 194 30 15 chr9 27205917 27207739 -90654888 + L1M2 LINE L1 2638 4494 -2354 3582 152 63 0 chr9 27207739 27208313 -90654314 - LTR9 LTR ERV1 0 612 3 5747 183 58 18 chr9 27208316 27209565 -90653062 - HUERS-P3b LTR ERV1 -7 7411 6112 3672 83 7 11 chr9 27209571 27210110 -90652517 - HUERS-P3b LTR ERV1 -3809 3609 3073 1777 217 76 2 chr9 27210110 27210520 -90652107 + LTR8 LTR ERV1 1 440 -251 13059 167 31 30 chr9 27210522 27211960 -90650667 - HUERS-P3b LTR ERV1 -4777 2641 1197 333 0 0 0 chr9 27211960 27211997 -90650630 + (CA)n Simple_repeat Simple_repeat 1 37 0 13059 167 31 30 chr9 27211997 27213180 -90649447 - HUERS-P3b LTR ERV1 -6221 1197 17 3591 162 46 2 chr9 27213197 27213783 -90648844 - LTR9 LTR ERV1 0 612 1 2746 198 13 5 chr9 27213783 27214416 -90648211 + L1M2 LINE L1 4491 5128 -1720 2387 40 40 17 chr9 27214421 27214719 -90647908 - AluY SINE Alu -6 305 1 348 83 0 0 chr9 27214930 27214978 -90647649 + (TG)n Simple_repeat Simple_repeat 1 48 0 228 336 51 7 chr9 27215405 27215542 -90647085 - MIR SINE MIR 0 262 120 213 354 0 0 chr9 27215810 27215875 -90646752 - MIR SINE MIR -3 259 195 236 217 28 104 chr9 27215882 27215988 -90646639 - MLT1H LTR MaLR 0 549 452 245 320 10 10 chr9 27216121 27216218 -90646409 - MLT1H LTR MaLR -307 242 146 1227 169 165 4 chr9 27216475 27216717 -90645910 - AluJo SINE Alu -15 297 17 23 97 0 0 chr9 27217035 27217107 -90645520 + AT_rich Low_complexity Low_complexity 1 72 0 201 363 0 0 chr9 27218396 27218487 -90644140 + (TA)n Simple_repeat Simple_repeat 2 92 0 1402 179 39 4 chr9 27218487 27218766 -90643861 + MLT1A1 LTR MaLR 77 365 0 21 57 0 0 chr9 27218770 27218805 -90643822 + AT_rich Low_complexity Low_complexity 1 35 0 979 215 92 0 chr9 27219035 27219339 -90643288 - MER33 DNA MER1_type -3 321 1 1658 241 145 73 chr9 27219819 27220768 -90641859 + LTR28 LTR ERV1 3 1020 0 1405 214 0 16 chr9 27220863 27221172 -90641455 - MER67D LTR ERV1 -210 304 1 278 254 218 9 chr9 27221507 27221617 -90641010 + MER5A DNA MER1_type 54 186 -3 2381 204 32 2 chr9 27222602 27223101 -90639526 + MER67D LTR ERV1 1 514 0 483 18 0 0 chr9 27223119 27223175 -90639452 + (TG)n Simple_repeat Simple_repeat 2 57 0 365 259 48 54 chr9 27223918 27224084 -90638543 + MIR SINE MIR 91 255 -7 246 179 0 0 chr9 27224102 27224158 -90638469 + CT-rich Low_complexity Low_complexity 3 58 0 250 250 25 0 chr9 27225012 27225092 -90637535 - MER53 DNA DNA -1 188 107 246 247 26 0 chr9 27225023 27225100 -90637527 + MER53 DNA DNA 23 101 -88 * 2827 13 0 0 chr9 27225797 27226110 -90636517 - AluYb8 SINE Alu -5 313 1 227 285 67 28 chr9 27226366 27226545 -90636082 - L1MEd LINE L1 -4562 1978 1793 812 316 79 68 chr9 27226545 27227383 -90635244 - L1MEd LINE L1 -1011 1890 935 2092 153 0 0 chr9 27227700 27228001 -90634626 - AluSx SINE Alu -9 303 3 2158 130 0 7 chr9 27228903 27229202 -90633425 - AluSc SINE Alu -12 297 1 34501 95 6 16 chr9 27230591 27236795 -90625832 + L1PA6 LINE L1 11 6153 -1 2186 131 73 14 chr9 27237378 27237722 -90624905 - THE1B LTR MaLR 0 364 1 11188 110 10 1 chr9 27237723 27239288 -90623339 - THE1B-int LTR MaLR -1 1579 1 1924 143 88 26 chr9 27239288 27239631 -90622996 - THE1B LTR MaLR 0 364 1 1113 175 0 0 chr9 27240284 27240484 -90622143 + L1PBa LINE L1 3 202 -6661 * 9162 123 60 7 chr9 27240481 27242683 -90619944 + L1PBa LINE L1 639 3129 -3733 559 254 31 16 chr9 27242930 27243123 -90619504 + LTR7 LTR ERV1 238 433 -17 5554 261 27 26 chr9 27243652 27247588 -90615039 + HERVH LTR ERV1 596 7682 -31 429 296 28 28 chr9 27247880 27248093 -90614534 + LTR7 LTR ERV1 238 450 0 4222 165 8 19 chr9 27248112 27249554 -90613073 + L1PB1 LINE L1 4333 5759 -392 198 0 0 0 chr9 27249554 27249576 -90613051 + (TCTA)n Simple_repeat Simple_repeat 1 22 0 4222 165 8 19 chr9 27249576 27249690 -90612937 + L1PB1 LINE L1 5759 5873 -278 2824 91 10 7 chr9 27249695 27250111 -90612516 - L1PA8 LINE L1 -2 6170 5754 1673 91 10 0 chr9 27249897 27250590 -90612037 - L1PA8A LINE L1 -162 5969 5126 1953 87 35 7 chr9 27250590 27250873 -90611754 + L1PB1 LINE L1 5857 6151 0 1291 208 65 6 chr9 27251617 27251939 -90610688 - MER58B DNA MER1_type 0 341 1 2365 120 14 19 chr9 27253210 27253576 -90609051 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 27254203 27254231 -90608396 + AT_rich Low_complexity Low_complexity 1 28 0 207 293 71 57 chr9 27255031 27255171 -90607456 + L2 LINE L2 2936 3077 -195 2631 136 44 2 chr9 27255695 27256106 -90606521 + MSTC LTR MaLR 1 428 0 202 280 20 0 chr9 27257005 27257055 -90605572 + L2 LINE L2 3217 3267 -5 28 61 0 0 chr9 27257603 27257652 -90604975 + AT_rich Low_complexity Low_complexity 1 49 0 245 215 15 0 chr9 27257872 27257937 -90604690 + (TA)n Simple_repeat Simple_repeat 2 67 0 243 0 0 0 chr9 27258191 27258218 -90604409 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 235 226 16 16 chr9 27258224 27258286 -90604341 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 23 68 0 0 chr9 27258344 27258388 -90604239 + AT_rich Low_complexity Low_complexity 1 44 0 3841 199 57 13 chr9 27258400 27259416 -90603211 - L1MB5 LINE L1 -9 6165 5103 827 217 17 0 chr9 27259409 27259589 -90603038 - L1MB5 LINE L1 -1543 4603 4421 * 190 367 72 7 chr9 27259984 27260123 -90602504 - L2 LINE L2 -5 3308 3161 679 310 175 14 chr9 27260754 27261324 -90601303 + L2 LINE L2 2641 3313 0 254 269 15 0 chr9 27263086 27263153 -90599474 + MIR3 SINE MIR 97 164 -44 2143 125 76 15 chr9 27264644 27264987 -90597640 - THE1B LTR MaLR 0 364 1 10888 109 19 2 chr9 27264997 27266540 -90596087 - THE1B-int LTR MaLR -11 1569 1 2102 113 69 17 chr9 27266540 27266886 -90595741 - THE1B LTR MaLR 0 364 1 193 356 76 30 chr9 27267591 27267723 -90594904 - MIR SINE MIR -76 186 49 372 94 0 0 chr9 27267975 27268028 -90594599 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr9 27269404 27269426 -90593201 + AT_rich Low_complexity Low_complexity 1 22 0 183 326 51 65 chr9 27269794 27269932 -90592695 - MIR SINE MIR -78 184 49 198 333 0 0 chr9 27270094 27270157 -90592470 - L2 LINE L2 -4 3268 3206 266 200 0 0 chr9 27270366 27270416 -90592211 - L1MC4a LINE L1 -6 7802 7753 471 138 23 92 chr9 27270416 27270546 -90592081 + L1MB8 LINE L1 5921 6041 -137 * 6679 61 9 0 chr9 27270535 27271405 -90591222 - L1PA7 LINE L1 0 6154 5277 231 61 0 0 chr9 27271490 27271523 -90591104 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr9 27272271 27272292 -90590335 + AT_rich Low_complexity Low_complexity 1 21 0 713 186 0 0 chr9 27272988 27273149 -90589478 + FLAM_C SINE Alu 6 166 0 1509 204 57 56 chr9 27274402 27274921 -90587706 - MER67C LTR ERV1 -5 509 1 333 0 0 0 chr9 27275450 27275487 -90587140 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 95 0 0 chr9 27275714 27275777 -90586850 + AT_rich Low_complexity Low_complexity 1 63 0 23 54 0 0 chr9 27278807 27278844 -90583783 + AT_rich Low_complexity Low_complexity 1 37 0 1626 196 2 86 chr9 27279566 27279767 -90582860 - MLT1A2 LTR MaLR 0 374 158 384 22 0 0 chr9 27279767 27279812 -90582815 + (TG)n Simple_repeat Simple_repeat 1 45 0 2893 159 36 26 chr9 27279819 27280404 -90582223 - LTR49 LTR ERV1 -2 593 3 1626 196 2 86 chr9 27280404 27280602 -90582025 - MLT1A2 LTR MaLR -222 152 1 336 48 0 0 chr9 27283112 27283154 -90579473 + (CA)n Simple_repeat Simple_repeat 1 42 0 229 279 122 0 chr9 27283159 27283301 -90579326 + MIR SINE MIR 94 262 0 1175 176 92 0 chr9 27283698 27283936 -90578691 + L1MB1 LINE L1 5905 6164 -4 2537 174 2 17 chr9 27284246 27284666 -90577961 - MSTC LTR MaLR -12 416 3 305 293 27 34 chr9 27284685 27284832 -90577795 + MLT1J1 LTR MaLR 62 207 -239 24 0 0 0 chr9 27285124 27285148 -90577479 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 27285468 27285492 -90577135 + AT_rich Low_complexity Low_complexity 1 24 0 291 28 0 0 chr9 27285699 27285735 -90576892 + (CA)n Simple_repeat Simple_repeat 1 36 0 655 314 63 26 chr9 27285910 27286289 -90576338 + L1ME1 LINE L1 5407 5799 -2009 21 0 0 0 chr9 27286468 27286489 -90576138 + AT_rich Low_complexity Low_complexity 1 21 0 2984 209 37 6 chr9 27286523 27287225 -90575402 + L1MB7 LINE L1 5296 6019 -165 328 272 97 68 chr9 27287489 27287695 -90574932 + L1MC4a LINE L1 6382 6593 -1215 691 306 35 11 chr9 27287755 27288131 -90574496 + L1MEc LINE L1 1419 1803 -4593 342 321 44 15 chr9 27288226 27288363 -90574264 + L1MC5 LINE L1 6647 6787 -1174 2415 254 97 14 chr9 27288416 27289745 -90572882 + L1MEc LINE L1 1838 3239 -2976 483 271 36 14 chr9 27289743 27289969 -90572658 + L1ME1 LINE L1 5943 6184 0 * 456 271 34 38 chr9 27290035 27290271 -90572356 + L1MC5 LINE L1 7679 7913 -48 23 0 0 0 chr9 27290474 27290497 -90572130 + AT_rich Low_complexity Low_complexity 1 23 0 477 333 52 0 chr9 27290544 27290697 -90571930 + MIR SINE MIR 36 196 -66 24 0 0 0 chr9 27290864 27290888 -90571739 + AT_rich Low_complexity Low_complexity 1 24 0 26343 43 2 2 chr9 27292811 27296926 -90565701 + L1PA4 LINE L1 2040 6155 0 1076 219 157 14 chr9 27297063 27297414 -90565213 - LTR37A LTR ERV1 -12 414 14 1588 245 57 18 chr9 27297644 27298085 -90564542 - MLT1C LTR MaLR -4 463 6 542 343 6 0 chr9 27298332 27298498 -90564129 + MIR3 SINE MIR 33 199 -9 325 253 11 33 chr9 27300504 27300595 -90562032 - MIR SINE MIR -15 247 159 294 279 257 0 chr9 27301522 27301662 -90560965 + MIR SINE MIR 23 198 -64 244 248 86 38 chr9 27301714 27301819 -90560808 - MIR SINE MIR -6 256 147 * 264 292 56 11 chr9 27301773 27301862 -90560765 + MIR SINE MIR 156 248 -14 204 40 0 0 chr9 27306456 27306481 -90556146 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 256 254 60 67 chr9 27307415 27307549 -90555078 - MIR SINE MIR 0 262 130 5595 124 5 28 chr9 27307684 27308577 -90554050 - MER4D LTR ERV1 0 872 1 208 329 35 0 chr9 27310930 27311015 -90551612 - MIR SINE MIR 0 262 175 189 325 48 24 chr9 27311105 27311188 -90551439 - MIR SINE MIR -131 131 47 259 313 154 42 chr9 27312381 27312549 -90550078 + MLT1J LTR MaLR 224 422 -89 2070 230 87 69 chr9 27312549 27313276 -90549351 + LTR68 LTR ERV1 1 740 0 259 313 154 42 chr9 27313276 27313321 -90549306 + MLT1J LTR MaLR 422 461 -50 22 0 0 0 chr9 27313973 27313995 -90548632 + AT_rich Low_complexity Low_complexity 1 22 0 275 383 17 8 chr9 27314876 27314996 -90547631 + MIR3 SINE MIR 88 208 0 247 317 58 50 chr9 27315143 27315263 -90547364 + MIR SINE MIR 71 191 -71 22 80 0 0 chr9 27315349 27315399 -90547228 + AT_rich Low_complexity Low_complexity 1 50 0 219 310 0 62 chr9 27315646 27315759 -90546868 + L2 LINE L2 1583 1688 -1626 276 329 66 48 chr9 27315790 27315957 -90546670 - MLT1K LTR MaLR -290 298 129 603 40 0 0 chr9 27316818 27316892 -90545735 + (TTTTA)n Simple_repeat Simple_repeat 2 75 0 217 331 141 21 chr9 27316949 27317091 -90545536 + MIR SINE MIR 34 192 -70 225 328 90 49 chr9 27317392 27317514 -90545113 - MIR SINE MIR -58 150 24 2076 196 34 12 chr9 27317573 27317986 -90544641 - MSTB LTR MaLR -4 422 1 1420 253 50 23 chr9 27319338 27319781 -90542846 - MLT1C LTR MaLR 0 467 13 24349 149 16 21 chr9 27320207 27323080 -90539547 - L1PA8A LINE L1 0 6446 3560 363 23 0 0 chr9 27323080 27323124 -90539503 + (TCTA)n Simple_repeat Simple_repeat 4 47 0 24349 149 16 21 chr9 27323124 27326666 -90535961 - L1PA8A LINE L1 -2886 3560 3 685 286 15 10 chr9 27327308 27327511 -90535116 + MIR SINE MIR 59 262 0 234 218 0 36 chr9 27327679 27327734 -90534893 + L3b LINE CR1 1527 1579 -4 197 376 83 32 chr9 27328127 27328284 -90534343 + L2 LINE L2 3108 3272 0 22 35 0 0 chr9 27328423 27328452 -90534175 + AT_rich Low_complexity Low_complexity 1 29 0 371 333 61 20 chr9 27328643 27328790 -90533837 - L2 LINE L2 -3 3269 3117 1365 196 0 0 chr9 27328863 27329087 -90533540 + AluJb SINE Alu 16 239 -73 274 300 244 17 chr9 27329497 27329857 -90532770 - L2 LINE L2 -619 2695 2254 243 0 0 0 chr9 27329873 27329900 -90532727 + (CA)n Simple_repeat Simple_repeat 2 28 0 254 155 0 56 chr9 27329971 27330042 -90532585 + (TG)n Simple_repeat Simple_repeat 2 68 0 245 218 26 39 chr9 27330072 27330150 -90532477 + L1MCa LINE L1 1992 2068 -4358 236 216 0 72 chr9 27330137 27330234 -90532393 - L1MC4 LINE L1 -1339 6703 6614 * 254 206 16 0 chr9 27330234 27330297 -90532330 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 270 281 11 0 chr9 27330301 27330390 -90532237 + L1MC4 LINE L1 6614 6703 -1339 229 322 26 53 chr9 27330528 27330646 -90531981 - L2 LINE L2 -1230 2084 1969 2158 118 0 0 chr9 27330646 27330943 -90531684 - AluSc SINE Alu -12 297 1 229 322 26 53 chr9 27330943 27330976 -90531651 - L2 LINE L2 -1345 1969 1937 2903 173 93 2 chr9 27330976 27331515 -90531112 - LTR69 LTR ERVL 0 588 1 206 280 0 0 chr9 27332015 27332065 -90530562 - MIR SINE MIR -15 247 198 509 342 21 60 chr9 27332070 27332403 -90530224 - L2 LINE L2 -1837 1477 1158 400 360 37 37 chr9 27332571 27332999 -90529628 + L1ME LINE L1 166 593 -5612 724 322 59 13 chr9 27333185 27333781 -90528846 + L1ME LINE L1 1007 1629 -4767 23 54 0 0 chr9 27333845 27333882 -90528745 + AT_rich Low_complexity Low_complexity 1 37 0 985 236 50 8 chr9 27333882 27334140 -90528487 + L1ME3 LINE L1 5890 6158 -4 273 302 89 68 chr9 27334262 27334497 -90528130 + L3 LINE CR1 1085 1324 -253 264 275 43 0 chr9 27334533 27334602 -90528025 + L3 LINE CR1 1430 1501 -76 1472 176 60 33 chr9 27334659 27334961 -90527666 + AluJb SINE Alu 1 310 -2 306 312 0 0 chr9 27337750 27337827 -90524800 + L2 LINE L2 2943 3019 -253 375 299 54 12 chr9 27337961 27338128 -90524499 + MIR SINE MIR 84 257 -5 21 71 0 0 chr9 27338140 27338182 -90524445 + AT_rich Low_complexity Low_complexity 1 42 0 1906 180 83 11 chr9 27339499 27339933 -90522694 + MLT1C LTR MaLR 3 467 0 439 310 65 27 chr9 27340192 27340560 -90522067 - HAL1b LINE L1 -708 640 259 206 241 0 19 chr9 27340565 27340619 -90522008 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 398 282 6 31 chr9 27340833 27340996 -90521631 - L1M4 LINE L1 -1421 4725 4567 1375 143 41 121 chr9 27341002 27341365 -90521262 + THE1C LTR MaLR 1 334 -41 2292 264 62 18 chr9 27341369 27342308 -90520319 - L1M4 LINE L1 -1622 4524 3545 399 288 74 18 chr9 27342332 27342669 -90519958 - L1MEc LINE L1 -5126 1270 915 1427 199 31 3 chr9 27342670 27342956 -90519671 + AluJb SINE Alu 1 294 -18 28 0 0 0 chr9 27342956 27342984 -90519643 + AT_rich Low_complexity Low_complexity 1 28 0 308 358 20 60 chr9 27343100 27343500 -90519127 - L1MEc LINE L1 -5572 824 441 568 345 26 40 chr9 27343574 27343925 -90518702 - L1MEc LINE L1 -6021 375 30 221 341 11 0 chr9 27345147 27345235 -90517392 + L2 LINE L2 2763 2851 -463 284 326 61 10 chr9 27346527 27346625 -90516002 + L2 LINE L2 3170 3272 0 208 375 11 0 chr9 27346694 27346782 -90515845 - MIR SINE MIR -82 180 92 693 291 88 30 chr9 27346913 27347424 -90515203 - LTR50 LTR ERVL 0 795 34 306 312 0 0 chr9 27348157 27348234 -90514393 + L2 LINE L2 2943 3019 -253 368 299 54 12 chr9 27348368 27348535 -90514092 + MIR SINE MIR 84 257 -5 21 71 0 0 chr9 27348547 27348589 -90514038 + AT_rich Low_complexity Low_complexity 1 42 0 1514 203 87 19 chr9 27349903 27350327 -90512300 + MLT1C LTR MaLR 3 455 -12 5193 79 39 0 chr9 27350678 27351390 -90511237 + HERVL-A2 LTR ERVL 4915 5654 0 2148 118 23 0 chr9 27351390 27351696 -90510931 + MLT2A2 LTR ERVL 1 313 -140 315 53 0 0 chr9 27351712 27351750 -90510877 - MLT2A2 LTR ERVL 0 453 416 245 167 0 56 chr9 27351791 27351845 -90510782 + MLT1F LTR MaLR 77 127 -415 226 304 0 0 chr9 27352060 27352116 -90510511 + L2 LINE L2 3212 3267 -5 220 146 24 0 chr9 27352765 27352806 -90509821 + (TA)n Simple_repeat Simple_repeat 2 43 0 28 0 0 0 chr9 27353244 27353272 -90509355 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr9 27354791 27354812 -90507815 + (A)n Simple_repeat Simple_repeat 1 21 0 565 184 16 0 chr9 27355525 27355650 -90506977 + L1MA7 LINE L1 6165 6291 0 518 336 137 24 chr9 27355718 27356398 -90506229 - L2 LINE L2 -1 3312 2542 2841 103 16 0 chr9 27356986 27357366 -90505261 + MLT2A2 LTR ERVL 8 393 -60 288 0 0 0 chr9 27357366 27357398 -90505229 + (TC)n Simple_repeat Simple_repeat 2 33 0 709 74 11 0 chr9 27357400 27357495 -90505132 - HERVL LTR ERVL -5416 238 143 659 311 104 17 chr9 27357787 27358086 -90504541 - LTR50 LTR ERVL 0 795 471 445 235 62 49 chr9 27358159 27358321 -90504306 - LTR50 LTR ERVL -629 166 3 266 348 51 0 chr9 27358453 27358591 -90504036 - L2 LINE L2 -4 3309 3165 222 215 91 29 chr9 27359292 27359375 -90503252 - MIR SINE MIR -15 193 97 280 293 35 100 chr9 27360898 27360924 -90501703 + L2 LINE L2 3023 3049 -264 2458 57 3 0 chr9 27360924 27361225 -90501402 + AluY SINE Alu 1 302 -9 280 293 35 100 chr9 27361225 27361427 -90501200 + L2 LINE L2 3049 3236 -77 1862 298 151 26 chr9 27361429 27362413 -90500214 - L2 LINE L2 -7 3306 2200 699 262 18 29 chr9 27362748 27363023 -90499604 + AluSc SINE Alu 6 277 -32 416 363 6 18 chr9 27363110 27363278 -90499349 - MLT1H1 LTR MaLR -357 198 33 240 170 0 0 chr9 27363535 27363588 -90499039 + GA-rich Low_complexity Low_complexity 1 53 0 647 305 120 7 chr9 27364204 27364496 -90498131 + MLT1I LTR MaLR 63 387 -22 343 253 32 97 chr9 27364708 27364842 -90497785 + MIR SINE MIR 70 194 -68 800 222 37 23 chr9 27364842 27365058 -90497569 + MER20 DNA MER1_type 1 219 0 343 253 32 97 chr9 27365058 27365077 -90497550 + MIR SINE MIR 194 213 -49 22 0 0 0 chr9 27365444 27365466 -90497161 + AT_rich Low_complexity Low_complexity 1 22 0 2023 146 0 13 chr9 27365904 27366220 -90496407 + AluSx SINE Alu 1 312 0 259 301 80 32 chr9 27367961 27368243 -90494384 + L1ME LINE L1 5509 5818 -303 270 256 11 111 chr9 27368639 27368729 -90493898 + L2 LINE L2 3136 3216 -56 219 281 115 10 chr9 27369294 27369390 -90493237 - MIR3 SINE MIR -1 207 102 2009 66 0 4 chr9 27369740 27369996 -90492631 + AluY SINE Alu 4 258 -53 207 0 0 0 chr9 27369997 27370020 -90492607 + (A)n Simple_repeat Simple_repeat 1 23 0 25444 90 10 6 chr9 27370492 27373920 -90488707 - HERVL LTR ERVL -2034 3620 181 2438 81 0 3 chr9 27374699 27375006 -90487621 + AluY SINE Alu 2 307 -4 280 274 0 24 chr9 27375370 27375454 -90487173 - MIR3 SINE MIR -42 166 85 1965 184 124 50 chr9 27375768 27376403 -90486224 + LTR1B LTR ERV1 1 720 -106 247 307 42 60 chr9 27376576 27376742 -90485885 + L2 LINE L2 2892 3054 -259 1016 202 23 18 chr9 27376829 27377047 -90485580 + MER20 DNA MER1_type 1 219 0 318 337 92 18 chr9 27377571 27377734 -90484893 - MIR3 SINE MIR 0 208 34 284 275 113 0 chr9 27378355 27378435 -90484192 + L2 LINE L2 3207 3295 -18 2014 118 3 7 chr9 27378451 27378772 -90483855 - AluSq SINE Alu 0 320 1 2080 157 18 0 chr9 27380044 27380381 -90482246 - MER61A LTR ERV1 0 343 1 1876 171 3 3 chr9 27381728 27382037 -90480590 + AluJo SINE Alu 2 310 -2 26 50 0 0 chr9 27382044 27382084 -90480543 + AT_rich Low_complexity Low_complexity 1 40 0 641 228 21 7 chr9 27384684 27384829 -90477798 + MER117 DNA MER1_type 4 150 -47 261 200 40 27 chr9 27384853 27384928 -90477699 + L2 LINE L2 2685 2760 -554 185 356 26 43 chr9 27385109 27385224 -90477403 + L2 LINE L2 2987 3099 -173 318 171 14 57 chr9 27385903 27385973 -90476654 + MER5A DNA MER1_type 10 76 -113 570 101 0 13 chr9 27385973 27386052 -90476575 + MER4E LTR ERV1 652 729 -37 187 274 236 19 chr9 27386088 27386194 -90476433 + MER5A DNA MER1_type 61 189 0 622 217 22 7 chr9 27386207 27386345 -90476282 - MER5B DNA MER1_type -30 148 9 219 285 223 31 chr9 27386358 27386488 -90476139 + MER5A DNA MER1_type 35 189 0 385 242 68 38 chr9 27386612 27386744 -90475883 + MLT1E3 LTR MaLR 69 204 -420 907 300 134 20 chr9 27386747 27387440 -90475187 + HAL1 LINE L1 1141 1912 -595 727 157 11 22 chr9 27387484 27387662 -90474965 + GA-rich Low_complexity Low_complexity 2 177 0 207 281 101 34 chr9 27388874 27388963 -90473664 - MIR3 SINE MIR -16 192 98 273 404 43 7 chr9 27390579 27390720 -90471907 + L2 LINE L2 3127 3272 0 2453 131 17 0 chr9 27391481 27391839 -90470788 + THE1B LTR MaLR 1 364 0 2452 167 24 5 chr9 27392000 27392420 -90470207 + MSTA LTR MaLR 1 428 0 275 355 43 16 chr9 27392596 27392782 -90469845 - MIR SINE MIR -52 210 20 26 30 0 0 chr9 27393227 27393260 -90469367 + AT_rich Low_complexity Low_complexity 1 33 0 182 208 83 21 chr9 27394336 27394384 -90468243 - L2 LINE L2 0 3272 3222 184 250 62 62 chr9 27394776 27394840 -90467787 + L3 LINE CR1 345 408 -1169 343 316 35 46 chr9 27395156 27395330 -90467297 - L2 LINE L2 -435 2879 2708 1256 129 0 0 chr9 27395331 27395501 -90467126 - AluSg/x SINE Alu -12 300 131 276 270 93 110 chr9 27395507 27395744 -90466883 - L2 LINE L2 -602 2712 2480 1563 203 7 7 chr9 27395918 27396204 -90466423 - AluJo SINE Alu -21 291 6 194 316 18 0 chr9 27396409 27396466 -90466161 - L2 LINE L2 -3 3269 3212 385 290 62 7 chr9 27397002 27397147 -90465480 - MIR SINE MIR -51 211 59 2467 75 0 3 chr9 27397462 27397770 -90464857 + AluY SINE Alu 1 307 -4 285 319 46 10 chr9 27398133 27398264 -90464363 - MIR3 SINE MIR -42 166 32 2374 179 176 45 chr9 27398531 27399195 -90463432 + LTR1B LTR ERV1 1 751 -75 217 283 17 0 chr9 27400452 27400512 -90462115 + MIR3 SINE MIR 125 185 -23 2293 98 7 0 chr9 27401521 27401827 -90460800 - AluY SINE Alu -3 308 1 1570 255 41 19 chr9 27401854 27402391 -90460236 - L1M4 LINE L1 -2154 3992 3444 375 344 49 101 chr9 27402642 27403070 -90459557 + L2 LINE L2 2866 3271 -1 366 114 0 0 chr9 27405251 27405321 -90457306 + (TA)n Simple_repeat Simple_repeat 1 70 0 441 103 0 0 chr9 27405422 27405490 -90457137 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 444 295 67 52 chr9 27407069 27407262 -90455365 + MIR SINE MIR 11 206 -56 1892 153 7 13 chr9 27407336 27407643 -90454984 - AluJo SINE Alu -5 307 3 417 282 164 9 chr9 27408349 27408569 -90454058 + MIR SINE MIR 9 262 0 180 0 0 0 chr9 27408671 27408691 -90453936 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 239 308 33 0 chr9 27408852 27408943 -90453684 - MIR3 SINE MIR -4 204 111 1185 87 0 0 chr9 27408960 27409110 -90453517 - AluSc SINE Alu -159 150 1 1966 138 0 3 chr9 27409113 27409436 -90453191 - AluSx SINE Alu 0 322 1 22 0 0 0 chr9 27409874 27409896 -90452731 + AT_rich Low_complexity Low_complexity 1 22 0 343 253 32 97 chr9 27410263 27410282 -90452345 - MIR SINE MIR -49 213 194 857 241 19 5 chr9 27410282 27410498 -90452129 - MER20 DNA MER1_type 0 219 1 343 253 32 97 chr9 27410498 27410632 -90451995 - MIR SINE MIR -68 194 70 652 312 129 6 chr9 27410844 27411161 -90451466 - MLT1I LTR MaLR -22 387 32 240 170 0 0 chr9 27411752 27411805 -90450822 + CT-rich Low_complexity Low_complexity 1 53 0 420 364 6 17 chr9 27412053 27412229 -90450398 + MLT1G3 LTR MaLR 25 198 -357 2297 92 7 3 chr9 27412288 27412592 -90450035 - AluSc SINE Alu -4 305 1 1433 255 14 31 chr9 27412593 27413009 -90449618 + MLT1C LTR MaLR 34 442 -25 539 289 108 16 chr9 27413067 27413390 -90449237 + MLT1G3 LTR MaLR 156 595 0 298 287 8 33 chr9 27413482 27413604 -90449023 + MLT1G3-int LTR MaLR 258 376 -995 231 243 81 0 chr9 27413696 27413770 -90448857 + MLT1C LTR MaLR 437 516 -39 313 307 11 0 chr9 27413819 27413907 -90448720 + MLT1H1 LTR MaLR 1 89 -466 213 65 0 0 chr9 27414931 27414962 -90447665 + (A)n Simple_repeat Simple_repeat 1 31 0 293 145 16 0 chr9 27415742 27415804 -90446823 + (CA)n Simple_repeat Simple_repeat 2 64 0 2096 136 0 16 chr9 27416390 27416707 -90445920 + AluJb SINE Alu 1 312 0 487 347 86 36 chr9 27416738 27417075 -90445552 + MLT1K LTR MaLR 3 356 -232 295 57 0 0 chr9 27417140 27417175 -90445452 + U2 snRNA snRNA 1 35 -153 295 351 76 0 chr9 27417937 27418068 -90444559 + MIR3 SINE MIR 65 205 -3 23 33 0 0 chr9 27418689 27418719 -90443908 + AT_rich Low_complexity Low_complexity 1 30 0 337 182 80 23 chr9 27419001 27419089 -90443538 - MIR SINE MIR -16 246 154 652 58 0 0 chr9 27419559 27419645 -90442982 - L1PA5 LINE L1 -1 6153 6068 2044 130 7 0 chr9 27420497 27420798 -90441829 + AluY SINE Alu 3 305 -6 457 238 57 33 chr9 27420978 27421100 -90441527 - MLT1I LTR MaLR -5 404 280 260 257 14 14 chr9 27421234 27421308 -90441319 - L2 LINE L2 -1 3312 3239 910 229 132 61 chr9 27421328 27421791 -90440836 - MER67C LTR ERV1 0 514 69 284 180 0 0 chr9 27421856 27421906 -90440721 - MER67D LTR ERV1 -453 61 12 298 178 41 0 chr9 27421925 27421998 -90440629 + L1MA9 LINE L1 6075 6150 -162 7100 238 112 17 chr9 27422012 27424287 -90438340 + L1M3e LINE L1 2 2509 -4528 2637 230 79 54 chr9 27424479 27425688 -90436939 + L1M1 LINE L1 2291 3597 -3968 342 93 19 0 chr9 27425688 27425742 -90436885 - MADE1 DNA Mariner -1 79 25 2637 230 79 54 chr9 27425742 27426133 -90436494 + L1M1 LINE L1 3597 3977 -3588 553 167 10 0 chr9 27426134 27426236 -90436391 + L1M1 LINE L1 4138 4240 -3325 1320 200 12 16 chr9 27426244 27426499 -90436128 - MLT1A1 LTR MaLR -111 254 1 1869 201 11 6 chr9 27426518 27426881 -90435746 + MLT1A1 LTR MaLR 1 365 0 571 276 65 14 chr9 27426906 27427120 -90435507 - L2 LINE L2 -1095 2219 1995 209 204 82 0 chr9 27427137 27427186 -90435441 - L2 LINE L2 -1890 1424 1372 2402 153 3 3 chr9 27427197 27427577 -90435050 + MLT1B LTR MaLR 1 380 -10 924 314 101 36 chr9 27427582 27428105 -90434522 - L2 LINE L2 -1959 1355 799 407 281 31 69 chr9 27428107 27428267 -90434360 - MER5A DNA MER1_type -5 184 31 320 317 175 6 chr9 27428309 27428492 -90434135 - L2 LINE L2 -2504 810 597 34 24 0 0 chr9 27428569 27428610 -90434017 + AT_rich Low_complexity Low_complexity 1 41 0 904 219 33 37 chr9 27428634 27428879 -90433748 + MLT1A1 LTR MaLR 1 271 -119 2015 125 6 56 chr9 27428882 27429219 -90433408 + MER1B DNA MER1_type 20 339 0 192 97 0 0 chr9 27429305 27429336 -90433291 + (CA)n Simple_repeat Simple_repeat 1 31 0 186 339 0 32 chr9 27429336 27429398 -90433229 - L3 LINE CR1 0 1577 1518 2013 165 55 80 chr9 27429422 27429936 -90432691 - L1MC1 LINE L1 -18 6315 5815 478 340 105 0 chr9 27430117 27430308 -90432319 - L3 LINE CR1 -65 1512 1302 311 335 20 66 chr9 27430584 27430781 -90431846 + L3b LINE CR1 1323 1510 -73 356 275 44 12 chr9 27430908 27431068 -90431559 + L1ME LINE L1 5630 5794 -327 33 56 0 0 chr9 27431282 27431336 -90431291 + AT_rich Low_complexity Low_complexity 1 54 0 504 304 119 28 chr9 27431864 27432252 -90430375 + L1ME2 LINE L1 676 1098 -5021 4361 195 31 12 chr9 27432253 27433359 -90429268 + L1MB3 LINE L1 4682 5824 -359 243 0 0 0 chr9 27433359 27433386 -90429241 + (CA)n Simple_repeat Simple_repeat 2 28 0 4361 195 31 12 chr9 27433386 27433753 -90428874 + L1MB3 LINE L1 5824 6183 0 481 284 54 50 chr9 27434808 27435125 -90427502 + L1ME2 LINE L1 2613 2930 -3199 301 316 53 35 chr9 27435190 27435361 -90427266 + L1ME2 LINE L1 4878 5051 -1078 263 288 70 35 chr9 27435565 27435822 -90426805 + L1ME2 LINE L1 5298 5563 -2228 342 270 87 24 chr9 27435855 27436098 -90426529 + L1ME2 LINE L1 5668 5929 -216 29 0 0 0 chr9 27436360 27436389 -90426238 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr9 27436508 27436549 -90426078 + AT_rich Low_complexity Low_complexity 1 41 0 205 333 17 0 chr9 27438637 27438697 -90423930 + L2 LINE L2 3244 3304 -9 322 347 28 21 chr9 27438934 27439078 -90423549 - MER5A DNA MER1_type -44 145 1 2946 69 0 0 chr9 27440503 27440878 -90421749 - L1PA7 LINE L1 -2 6152 5778 1864 169 27 11 chr9 27441236 27441846 -90420781 - MER67C LTR ERV1 0 710 1 419 291 126 13 chr9 27442508 27442659 -90419968 - MIR SINE MIR -74 188 21 208 200 31 0 chr9 27443626 27443691 -90418936 + (TA)n Simple_repeat Simple_repeat 1 67 0 229 356 53 0 chr9 27444527 27444659 -90417968 - MIR SINE MIR -13 249 111 342 219 0 24 chr9 27444864 27444946 -90417681 - LTR67 LTR ERVL -21 536 457 2170 126 0 0 chr9 27446843 27447145 -90415482 - AluSq SINE Alu -11 302 1 1512 146 8 8 chr9 27447975 27448215 -90414412 + AluSg SINE Alu 1 240 -70 180 0 0 0 chr9 27449108 27449128 -90413499 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr9 27449229 27449253 -90413374 + AT_rich Low_complexity Low_complexity 1 24 0 308 263 0 26 chr9 27449333 27449409 -90413218 - MER5A DNA MER1_type -3 186 113 274 288 0 30 chr9 27449361 27449427 -90413200 + MER5A DNA MER1_type 43 106 -83 * 393 289 82 31 chr9 27449781 27449994 -90412633 - MIR SINE MIR -32 230 3 200 360 101 0 chr9 27450420 27450509 -90412118 + MIR SINE MIR 8 105 -157 2240 90 0 35 chr9 27450536 27450846 -90411781 - AluY SINE Alu -10 301 3 191 146 24 0 chr9 27451518 27451559 -90411068 + CT-rich Low_complexity Low_complexity 1 42 0 680 214 26 7 chr9 27452700 27452854 -90409773 + FRAM SINE Alu 1 157 -19 225 0 0 0 chr9 27453624 27453649 -90408978 + (A)n Simple_repeat Simple_repeat 1 25 0 263 265 48 36 chr9 27453735 27453818 -90408809 + MIR SINE MIR 28 111 -151 222 37 0 0 chr9 27454088 27454115 -90408512 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2226 115 0 0 chr9 27454162 27454458 -90408169 + AluSx SINE Alu 1 296 -16 691 276 21 16 chr9 27454744 27454936 -90407691 + MLT1I LTR MaLR 210 402 -7 26 0 0 0 chr9 27455820 27455846 -90406781 + AT_rich Low_complexity Low_complexity 1 26 0 185 154 26 0 chr9 27457858 27457897 -90404730 + (TA)n Simple_repeat Simple_repeat 1 40 0 569 301 74 6 chr9 27458262 27458425 -90404202 + MER5B DNA MER1_type 1 174 -4 761 195 0 0 chr9 27458606 27458734 -90403893 + MER7A DNA MER2_type 1 126 -220 853 203 46 13 chr9 27458745 27458982 -90403645 + MER33 DNA MER1_type 52 296 -28 327 320 98 34 chr9 27459344 27459578 -90403049 + MIR SINE MIR 2 250 -12 314 313 118 28 chr9 27459712 27459856 -90402771 + L2 LINE L2 3116 3272 0 342 266 13 0 chr9 27461092 27461171 -90401456 + Tigger3(Golem) DNA MER2_type 1 80 -2949 338 209 15 0 chr9 27461271 27461338 -90401289 + Tigger3(Golem) DNA MER2_type 2961 3028 -1 267 234 16 0 chr9 27461810 27461874 -90400753 + MIR SINE MIR 133 197 -65 550 296 59 0 chr9 27462063 27462232 -90400395 + MIR SINE MIR 37 215 -47 296 297 136 22 chr9 27462876 27463149 -90399478 + L1ME LINE L1 5536 5839 -282 270 256 11 111 chr9 27463523 27463613 -90399014 + L2 LINE L2 3136 3216 -56 2141 63 56 7 chr9 27464394 27464679 -90397948 + AluY SINE Alu 1 299 -12 29 28 0 0 chr9 27465567 27465603 -90397024 + AT_rich Low_complexity Low_complexity 1 36 0 25 65 0 0 chr9 27465694 27465740 -90396887 + AT_rich Low_complexity Low_complexity 1 46 0 368 246 92 8 chr9 27465829 27465959 -90396668 + MER103 DNA DNA 2 142 -24 373 263 42 34 chr9 27466169 27466287 -90396340 + MLT1J LTR MaLR 1 119 -392 286 298 67 0 chr9 27466755 27466859 -90395768 + LTR67 LTR ERVL 433 543 -14 1821 211 103 29 chr9 27466932 27467416 -90395211 + MLT2B1 LTR ERVL 1 520 0 223 314 100 14 chr9 27468629 27468769 -90393858 + MIR SINE MIR 98 249 -13 482 353 120 15 chr9 27469582 27469990 -90392637 + L2 LINE L2 2426 2876 -438 2148 123 0 7 chr9 27470249 27470557 -90392070 + AluSg SINE Alu 1 306 -4 1241 138 0 0 chr9 27470898 27471087 -90391540 + AluSg/x SINE Alu 124 312 0 8203 50 8 227 chr9 27471680 27473453 -90389174 - SVA Other Other -2 1384 1 718 171 85 8 chr9 27473566 27473695 -90388932 - FRAM SINE Alu -22 154 16 925 190 65 0 chr9 27475223 27475407 -90387220 + MER3 DNA MER1_type 10 205 -4 1040 305 96 47 chr9 27475469 27476270 -90386357 - HAL1 LINE L1 -1496 1011 172 246 179 0 0 chr9 27476470 27476526 -90386101 + (TGGA)n Simple_repeat Simple_repeat 1 56 0 2545 57 0 0 chr9 27476544 27476842 -90385785 - AluY SINE Alu -13 298 1 600 252 69 13 chr9 27477536 27477695 -90384932 - MIR3 SINE MIR -7 201 34 710 281 13 45 chr9 27477886 27478110 -90384517 + MIR SINE MIR 20 236 -26 332 312 89 13 chr9 27478901 27479058 -90383569 - MIR3 SINE MIR -10 198 30 389 318 218 0 chr9 27479114 27479284 -90383343 - L2 LINE L2 -2531 783 577 220 387 0 0 chr9 27481897 27481972 -90380655 - L2 LINE L2 -2 3270 3196 475 311 42 37 chr9 27482031 27482221 -90380406 + MIR3 SINE MIR 9 199 -9 350 332 80 25 chr9 27482511 27482710 -90379917 - MIR SINE MIR -49 213 4 24 32 0 0 chr9 27483922 27483953 -90378674 + AT_rich Low_complexity Low_complexity 1 31 0 215 306 32 0 chr9 27484522 27484584 -90378043 + L2 LINE L2 3209 3272 0 358 331 22 39 chr9 27485478 27485593 -90377034 + MIR SINE MIR 42 154 -108 919 275 60 68 chr9 27485593 27486047 -90376580 + MLT1J2 LTR MaLR 1 450 0 358 331 22 39 chr9 27486047 27486112 -90376515 + MIR SINE MIR 154 219 -43 2000 109 14 3 chr9 27486115 27486398 -90376229 + AluSp SINE Alu 5 290 -23 2164 114 0 7 chr9 27486410 27486709 -90375918 + AluSc SINE Alu 1 297 -12 324 342 45 19 chr9 27487610 27487765 -90374862 - MIR SINE MIR -11 251 93 227 167 48 24 chr9 27488416 27488500 -90374127 + (CACAC)n Simple_repeat Simple_repeat 1 86 0 618 233 62 28 chr9 27488638 27488814 -90373813 + LTR53 LTR ERVL 338 519 0 545 250 17 0 chr9 27490471 27490587 -90372040 + FLAM_A SINE Alu 1 118 -15 813 276 74 87 chr9 27490602 27490712 -90371915 - MLT1G LTR MaLR -52 538 428 726 238 119 10 chr9 27490712 27490905 -90371722 - MER58C DNA MER1_type -1 214 1 813 276 74 87 chr9 27490905 27491311 -90371316 - MLT1G LTR MaLR -162 428 1 21 0 0 0 chr9 27492090 27492111 -90370516 + AT_rich Low_complexity Low_complexity 1 21 0 274 260 13 39 chr9 27492564 27492641 -90369986 + MIR3 SINE MIR 125 199 -9 21 0 0 0 chr9 27493297 27493318 -90369309 + AT_rich Low_complexity Low_complexity 1 21 0 1901 152 33 0 chr9 27494409 27494711 -90367916 + AluSx SINE Alu 1 312 0 216 138 52 69 chr9 27495294 27495352 -90367275 + L2 LINE L2 3257 3313 0 597 308 68 13 chr9 27495556 27495790 -90366837 + MIR SINE MIR 3 249 -13 21 0 0 0 chr9 27495854 27495875 -90366752 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 27495950 27495982 -90366645 + AT_rich Low_complexity Low_complexity 1 32 0 231 114 0 0 chr9 27496552 27496596 -90366031 + (T)n Simple_repeat Simple_repeat 1 44 0 21 57 0 0 chr9 27497565 27497600 -90365027 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr9 27498987 27499029 -90363598 + AT_rich Low_complexity Low_complexity 1 42 0 211 306 97 0 chr9 27499988 27500112 -90362515 - MIR SINE MIR -58 204 69 2487 84 0 0 chr9 27501072 27501383 -90361244 - AluY SINE Alu 0 311 1 300 342 173 27 chr9 27502191 27502486 -90360141 - L2 LINE L2 0 3272 2935 30587 34 14 1 chr9 27503272 27509297 -90353330 + L1PA3 LINE L1 1 6154 -1 22 0 0 0 chr9 27510100 27510122 -90352505 + AT_rich Low_complexity Low_complexity 1 22 0 448 311 34 28 chr9 27511312 27511530 -90351097 - MIR SINE MIR -34 228 9 1807 169 0 10 chr9 27512069 27512365 -90350262 - AluJo SINE Alu -13 299 7 22 0 0 0 chr9 27512472 27512494 -90350133 + AT_rich Low_complexity Low_complexity 1 22 0 2045 133 3 0 chr9 27512626 27512928 -90349699 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 27513301 27513330 -90349297 + AT_rich Low_complexity Low_complexity 1 29 0 328 361 9 69 chr9 27513847 27514063 -90348564 + MIR SINE MIR 47 249 -13 3398 137 33 50 chr9 27514747 27514871 -90347756 - LTR26 LTR ERV1 0 603 478 3467 109 58 0 chr9 27514871 27515419 -90347208 - LTR19B LTR ERV1 0 580 1 3398 137 33 50 chr9 27515419 27515908 -90346719 - LTR26 LTR ERV1 -125 478 1 393 221 0 0 chr9 27516714 27516800 -90345827 - L1P LINE L1 -3420 2726 2641 384 283 6 17 chr9 27516807 27516980 -90345647 + L1P LINE L1 2747 2917 -3229 * 5217 132 23 9 chr9 27516971 27517827 -90344800 + L1PA15 LINE L1 5293 6160 -5 2187 253 47 0 chr9 27518717 27519255 -90343372 + MLT1F1 LTR MaLR 1 563 -4 2125 129 17 8 chr9 27520300 27520656 -90341971 + L1MA8 LINE L1 5931 6289 -2 31 26 0 0 chr9 27520656 27520694 -90341933 + AT_rich Low_complexity Low_complexity 1 38 0 225 194 32 16 chr9 27521454 27521516 -90341111 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr9 27521768 27521789 -90340838 + AT_rich Low_complexity Low_complexity 1 21 0 2175 98 0 19 chr9 27522450 27522757 -90339870 - AluY SINE Alu -8 303 3 488 270 16 0 chr9 27523605 27523731 -90338896 - MIR SINE MIR -4 258 131 26 30 0 0 chr9 27524307 27524340 -90338287 + AT_rich Low_complexity Low_complexity 1 33 0 4212 158 16 11 chr9 27524869 27525577 -90337050 - MER50 LTR ERV1 -23 711 1 340 306 37 9 chr9 27525646 27525754 -90336873 + MIR SINE MIR 36 146 -62 336 336 17 8 chr9 27528147 27528266 -90334361 - MIR SINE MIR -123 139 20 2120 220 5 36 chr9 27528967 27529039 -90333588 - L1P LINE L1 -1070 5076 5003 1952 100 100 0 chr9 27529039 27529309 -90333318 - AluSq SINE Alu -12 301 5 2120 220 5 36 chr9 27529309 27529794 -90332833 - L1P LINE L1 -1143 5003 4536 354 64 0 0 chr9 27530001 27530048 -90332579 - MADE1 DNA Mariner -3 77 31 26 50 0 0 chr9 27530559 27530599 -90332028 + AT_rich Low_complexity Low_complexity 1 40 0 30379 119 12 57 chr9 27530602 27537051 -90325576 + L1PA7 LINE L1 5 6154 0 335 356 10 0 chr9 27537215 27537316 -90325311 + L2 LINE L2 3117 3218 -54 482 277 48 48 chr9 27537991 27538240 -90324387 + L1M4 LINE L1 14 262 -6280 5006 242 51 53 chr9 27538270 27540992 -90321635 - L1M4c LINE L1 -3437 3207 359 604 91 0 0 chr9 27540992 27541080 -90321547 + L1PA13 LINE L1 6073 6160 -3 5006 242 51 53 chr9 27541080 27541390 -90321237 - L1M4c LINE L1 -6285 359 50 5034 180 12 34 chr9 27541404 27543468 -90319159 - L1PA16 LINE L1 -9 6157 4125 194 0 0 37 chr9 27543560 27543587 -90319040 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 605 321 57 22 chr9 27543655 27544023 -90318604 + L1M4 LINE L1 485 865 -5677 1966 240 42 54 chr9 27544097 27544763 -90317864 + L1M4 LINE L1 879 1537 -5005 2054 125 7 7 chr9 27544763 27545060 -90317567 + AluSx SINE Alu 1 297 -15 1966 240 42 54 chr9 27545060 27545130 -90317497 + L1M4 LINE L1 1537 1606 -4936 242 387 76 0 chr9 27545133 27545252 -90317375 + MER5B DNA MER1_type 49 176 -2 242 315 120 28 chr9 27545263 27545371 -90317256 - MER5B DNA MER1_type -1 177 60 1672 128 4 51 chr9 27545399 27545672 -90316955 - AluSq SINE Alu -53 260 1 188 160 260 0 chr9 27545674 27545724 -90316903 - MER5B DNA MER1_type -115 63 1 221 349 12 12 chr9 27547967 27548050 -90314577 + L2 LINE L2 2957 3039 -233 185 370 9 19 chr9 27548530 27548638 -90313989 + L2 LINE L2 2904 3010 -262 192 125 0 0 chr9 27550164 27550196 -90312431 + (T)n Simple_repeat Simple_repeat 1 32 0 2252 123 0 0 chr9 27550205 27550515 -90312112 - AluSg SINE Alu 0 310 1 876 342 76 13 chr9 27550872 27551494 -90311133 + L2 LINE L2 2642 3313 0 195 189 27 0 chr9 27551649 27551686 -90310941 + L2 LINE L2 3213 3250 -22 237 317 10 29 chr9 27553053 27553157 -90309470 + MIR SINE MIR 13 114 -148 221 320 40 0 chr9 27553203 27553278 -90309349 + MIR SINE MIR 125 202 -60 225 0 0 0 chr9 27553327 27553352 -90309275 + (CA)n Simple_repeat Simple_repeat 2 26 0 199 147 173 53 chr9 27554450 27554525 -90308102 - L2 LINE L2 -4 3268 3185 544 300 141 14 chr9 27554749 27554969 -90307658 + MIR SINE MIR 15 262 0 979 208 84 44 chr9 27555414 27555776 -90306851 + LTR52 LTR ERVL 1 418 -3 355 289 25 16 chr9 27556092 27556213 -90306414 - MER94 DNA DNA -3 131 10 302 337 105 16 chr9 27556524 27556714 -90305913 + MIR SINE MIR 53 259 -3 341 276 16 8 chr9 27556835 27556958 -90305669 + L1ME LINE L1 5536 5659 -462 184 360 92 7 chr9 27557053 27557206 -90305421 + MIR SINE MIR 97 262 0 2152 119 0 3 chr9 27557386 27557689 -90304938 - AluSx SINE Alu -10 302 1 195 252 63 158 chr9 27559330 27559457 -90303170 - MIR3 SINE MIR -1 207 93 2412 92 0 0 chr9 27559497 27559803 -90302824 - AluSg SINE Alu -4 306 1 300 91 0 0 chr9 27560221 27560265 -90302362 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 338 100 12 chr9 27561830 27561910 -90300717 + L2 LINE L2 3148 3234 -38 321 302 42 0 chr9 27562133 27562229 -90300398 + MIR SINE MIR 89 188 -74 445 192 13 0 chr9 27564482 27564560 -90298067 - Tigger7 DNA MER2_type -651 82 4 252 209 90 0 chr9 27564579 27564646 -90297981 - Zaphod DNA AcHobo -3304 727 655 1035 167 39 0 chr9 27564695 27564875 -90297752 + MER3 DNA MER1_type 10 196 -13 1606 275 22 0 chr9 27564889 27565289 -90297338 - Zaphod DNA AcHobo -3461 570 162 318 87 0 0 chr9 27565335 27565381 -90297246 + (TG)n Simple_repeat Simple_repeat 1 46 0 369 319 85 0 chr9 27566593 27566734 -90295893 + L2 LINE L2 3128 3280 -33 773 280 16 11 chr9 27566777 27566966 -90295661 - MIR SINE MIR -65 197 8 2566 227 27 22 chr9 27567210 27567764 -90294863 + MER68 LTR ERV1 6 562 0 427 318 35 17 chr9 27567955 27568128 -90294499 + MIR SINE MIR 85 260 -2 214 200 22 0 chr9 27568980 27569025 -90293602 + GA-rich Low_complexity Low_complexity 3 48 0 347 344 62 16 chr9 27569340 27569511 -90293116 - MIR SINE MIR -61 147 14 204 423 0 21 chr9 27570329 27570426 -90292201 - MIR SINE MIR -145 117 23 294 305 136 26 chr9 27570787 27570941 -90291686 - L2 LINE L2 -1 3271 3101 337 327 142 58 chr9 27571586 27571932 -90290695 + HAL1 LINE L1 1 375 -2132 1020 300 105 15 chr9 27571935 27573230 -90289397 + HAL1 LINE L1 581 2045 -462 1691 174 16 19 chr9 27573434 27573745 -90288882 - AluSx SINE Alu -2 310 1 25 51 0 0 chr9 27576245 27576284 -90286343 + AT_rich Low_complexity Low_complexity 1 39 0 2805 19 0 6 chr9 27576618 27576938 -90285689 - AluYb8 SINE Alu 0 318 1 460 368 63 9 chr9 27579386 27579609 -90283018 + MIR SINE MIR 22 256 -6 183 333 67 0 chr9 27584361 27584421 -90278206 + L2 LINE L2 3210 3273 -40 302 370 0 7 chr9 27584846 27584981 -90277646 - L2 LINE L2 -444 2870 2737 363 260 29 10 chr9 27585090 27585194 -90277433 + MER94 DNA DNA 24 129 -5 349 219 0 122 chr9 27585846 27586010 -90276617 + L1ME4a LINE L1 5843 5986 -135 549 275 150 0 chr9 27586114 27586274 -90276353 - MER5A DNA MER1_type -2 187 4 628 252 56 0 chr9 27586301 27586444 -90276183 - MER5B DNA MER1_type -16 162 12 25 31 0 0 chr9 27586462 27586494 -90276133 + AT_rich Low_complexity Low_complexity 1 32 0 516 113 21 54 chr9 27586499 27586685 -90275942 + (TA)n Simple_repeat Simple_repeat 1 180 0 299 313 42 0 chr9 27586816 27586912 -90275715 + MIR SINE MIR 89 188 -74 213 368 94 9 chr9 27587559 27587665 -90274962 + MIR3 SINE MIR 87 201 -7 537 253 81 0 chr9 27587748 27587922 -90274705 - MER5A DNA MER1_type 0 189 2 234 0 0 0 chr9 27588692 27588718 -90273909 + (CA)n Simple_repeat Simple_repeat 1 26 0 216 325 0 12 chr9 27588718 27588798 -90273829 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 248 141 0 56 chr9 27589491 27589562 -90273065 - L1MC4 LINE L1 -1339 6703 6637 513 273 89 74 chr9 27591433 27591880 -90270747 + LTR16A1 LTR ERVL 4 457 0 463 317 113 14 chr9 27591918 27592139 -90270488 + MIR SINE MIR 8 250 -12 24 0 0 0 chr9 27592502 27592526 -90270101 + AT_rich Low_complexity Low_complexity 1 24 0 2878 157 72 9 chr9 27592530 27593098 -90269529 - L1MB1 LINE L1 0 6168 5565 188 352 127 0 chr9 27593176 27593318 -90269309 - MIR SINE MIR 0 262 103 325 155 63 0 chr9 27594528 27594736 -90267891 + (TA)n Simple_repeat Simple_repeat 1 221 0 2268 107 0 0 chr9 27594736 27595034 -90267593 - AluSc SINE Alu -10 299 2 2141 111 3 10 chr9 27595090 27595387 -90267240 - AluSq SINE Alu -18 295 1 1576 232 46 81 chr9 27595562 27596117 -90266510 - MLT1F1 LTR MaLR 0 567 33 * 4551 133 43 19 chr9 27596101 27596929 -90265698 + Tigger3(Golem) DNA MER2_type 2181 3028 -1 565 184 37 9 chr9 27597274 27597383 -90265244 - MER46A DNA MER2_type -124 112 1 254 250 0 0 chr9 27597335 27597391 -90265236 + MER46A DNA MER2_type 97 152 -84 * 6637 230 75 33 chr9 27597391 27600344 -90262283 + L1MA9 LINE L1 2533 5601 -1964 1078 275 65 50 chr9 27600447 27600982 -90261645 - L1PBa LINE L1 -6312 551 9 14526 196 13 13 chr9 27600987 27602883 -90259744 + L1PB1 LINE L1 872 2766 -4101 5231 58 37 11 chr9 27602883 27603587 -90259040 + LTR30 LTR ERV1 1 722 0 14526 196 13 13 chr9 27603587 27607494 -90255133 + L1PB1 LINE L1 2766 6859 -8 4987 170 30 41 chr9 27607506 27609659 -90252968 + L1MA9 LINE L1 5594 7731 0 25 31 0 0 chr9 27609668 27609700 -90252927 + AT_rich Low_complexity Low_complexity 1 32 0 282 256 6 122 chr9 27610007 27610187 -90252440 + MLT1I LTR MaLR 229 387 -22 22 35 0 0 chr9 27612667 27612696 -90249931 + AT_rich Low_complexity Low_complexity 1 29 0 255 119 0 0 chr9 27613409 27613451 -90249176 - MER3 DNA MER1_type -160 49 8 1131 227 0 49 chr9 27613525 27613579 -90249048 - L1ME2 LINE L1 -254 5910 5855 2019 121 10 36 chr9 27613579 27613884 -90248743 + AluSq SINE Alu 3 299 -14 1131 227 0 49 chr9 27613884 27614115 -90248512 - L1ME2 LINE L1 -309 5855 5639 * 1739 242 95 9 chr9 27614109 27614770 -90247857 - L1ME2 LINE L1 -1706 4440 3723 261 201 122 79 chr9 27614850 27614989 -90247638 + MLT1L LTR MaLR 471 615 0 191 317 50 50 chr9 27615096 27615197 -90247430 - MIR SINE MIR -49 213 113 935 207 163 82 chr9 27615382 27615800 -90246827 + MER66A LTR ERV1 97 475 -3 2530 65 0 0 chr9 27616147 27616457 -90246170 - AluY SINE Alu -1 310 1 274 306 56 9 chr9 27617247 27617355 -90245272 - MIR SINE MIR -50 212 100 1708 152 37 10 chr9 27617390 27617686 -90244941 - MER57A LTR ERV1 0 403 100 220 319 129 36 chr9 27618607 27618855 -90243772 + L2 LINE L2 2826 3096 -176 227 366 168 0 chr9 27620302 27620403 -90242224 - L2 LINE L2 -16 3256 3139 777 204 25 181 chr9 27620462 27620903 -90241724 + MLT1A2 LTR MaLR 1 372 -2 217 398 73 8 chr9 27621928 27622051 -90240576 - L2 LINE L2 -21 3251 3121 373 266 95 38 chr9 27622251 27622409 -90240218 - MIR SINE MIR -52 210 44 262 303 172 5 chr9 27622428 27622626 -90240001 - MIR SINE MIR -1 261 31 30 27 0 0 chr9 27623880 27623917 -90238710 + AT_rich Low_complexity Low_complexity 1 37 0 430 240 0 0 chr9 27624571 27624646 -90237981 + L2 LINE L2 3198 3272 0 2433 82 0 0 chr9 27625311 27625616 -90237011 + AluSg SINE Alu 1 305 -5 264 288 14 0 chr9 27626380 27626453 -90236174 - L2 LINE L2 -47 3266 3193 1200 273 86 67 chr9 27626480 27627456 -90235171 - L1ME LINE L1 -4981 1089 95 207 0 0 0 chr9 27628184 27628207 -90234420 + (CA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr9 27628640 27628669 -90233958 + AT_rich Low_complexity Low_complexity 1 29 0 1206 232 134 46 chr9 27628836 27628870 -90233757 - MLT2B1 LTR ERVL 0 520 490 180 0 0 0 chr9 27628870 27628890 -90233737 + (GA)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr9 27628892 27628920 -90233707 + (TG)n Simple_repeat Simple_repeat 2 29 0 1206 232 134 46 chr9 27628920 27629360 -90233267 - MLT2B1 LTR ERVL -30 490 1 330 327 0 9 chr9 27629833 27629940 -90232687 + MIR SINE MIR 41 146 -116 183 331 8 85 chr9 27630020 27630150 -90232477 - L2 LINE L2 -12 3260 3141 253 263 38 0 chr9 27630220 27630300 -90232327 + L1M4 LINE L1 5150 5232 -914 335 286 60 38 chr9 27630495 27630680 -90231947 + L1M4 LINE L1 2120 2308 -3838 844 288 58 56 chr9 27630744 27630835 -90231792 - L2 LINE L2 0 3313 3224 1228 206 121 0 chr9 27630835 27631107 -90231520 + AluJo SINE Alu 4 308 -4 844 288 58 56 chr9 27631107 27631428 -90231199 - L2 LINE L2 -89 3224 2900 624 301 83 0 chr9 27631417 27631633 -90230994 - L2 LINE L2 -563 2751 2518 * 2200 108 0 3 chr9 27631633 27631965 -90230662 + AluSq SINE Alu 1 331 0 1605 151 63 0 chr9 27631974 27632259 -90230368 + L1MA9 LINE L1 5971 6273 -39 307 232 71 18 chr9 27632279 27632391 -90230236 + Charlie7 DNA MER1_type 563 680 -1932 24 53 0 0 chr9 27632391 27632429 -90230198 + AT_rich Low_complexity Low_complexity 1 38 0 307 273 51 51 chr9 27632453 27632706 -90229921 + L1M4 LINE L1 2843 3095 -3051 5044 70 2 0 chr9 27633023 27633938 -90228689 - L1PA5 LINE L1 -512 5642 4726 4052 58 0 12 chr9 27633938 27634456 -90228171 + L1PA5 LINE L1 5640 6151 -3 25 0 0 0 chr9 27634456 27634481 -90228146 + AT_rich Low_complexity Low_complexity 1 25 0 225 383 31 39 chr9 27634601 27634729 -90227898 + L2 LINE L2 3136 3262 -10 359 300 0 42 chr9 27634772 27634892 -90227735 + MIR SINE MIR 33 147 -61 24 0 0 0 chr9 27634927 27634951 -90227676 + AT_rich Low_complexity Low_complexity 1 24 0 746 245 159 32 chr9 27635111 27635611 -90227016 + MLT1G1 LTR MaLR 7 590 0 622 276 68 41 chr9 27637242 27637463 -90225164 + MIR SINE MIR 6 232 -30 330 200 57 14 chr9 27637560 27637630 -90224997 - MIR SINE MIR -165 97 25 330 333 59 7 chr9 27637699 27637834 -90224793 - MIR3 SINE MIR -64 144 3 526 190 152 13 chr9 27638038 27638173 -90224454 + MER5A DNA MER1_type 4 160 -29 981 164 0 99 chr9 27638198 27638430 -90224197 - MER20 DNA MER1_type -4 215 7 309 236 0 56 chr9 27638630 27638719 -90223908 + LTR16A1 LTR ERVL 371 454 -3 24 32 0 0 chr9 27639459 27639490 -90223137 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 27640259 27640282 -90222345 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr9 27640586 27640615 -90222012 + AT_rich Low_complexity Low_complexity 1 29 0 703 260 120 19 chr9 27641839 27642224 -90220403 - MLT1J LTR MaLR 0 511 41 360 0 0 0 chr9 27642250 27642290 -90220337 + (CA)n Simple_repeat Simple_repeat 2 41 0 2467 54 0 3 chr9 27642792 27643090 -90219537 - AluY SINE Alu -14 297 1 4768 193 45 12 chr9 27643096 27644601 -90218026 - L1P4 LINE L1 -467 7137 5589 1101 185 15 0 chr9 27644595 27644800 -90217827 - L1 LINE L1 -1865 4281 4074 * 1931 104 92 19 chr9 27644814 27645131 -90217496 + THE1C LTR MaLR 1 340 -35 9428 121 55 36 chr9 27645131 27646662 -90215965 + THE1C-int LTR MaLR 20 1580 0 2139 144 22 16 chr9 27646662 27647031 -90215596 + THE1C LTR MaLR 1 371 -4 2747 240 10 0 chr9 27647032 27647656 -90214971 - L1P4 LINE L1 -2080 5504 4875 5023 224 34 28 chr9 27647687 27649562 -90213065 - L1P4 LINE L1 -3525 4059 2204 394 313 18 22 chr9 27649816 27650044 -90212583 - L1P4 LINE L1 -5269 2305 2084 777 296 53 37 chr9 27650061 27650439 -90212188 - L1P4 LINE L1 -6209 1365 982 229 159 0 0 chr9 27650480 27650524 -90212103 + LTR66 LTR ERVL 393 436 -174 266 299 0 0 chr9 27650544 27650631 -90211996 - L1MC4 LINE L1 -1342 6700 6614 264 200 0 0 chr9 27650633 27650693 -90211934 + (TA)n Simple_repeat Simple_repeat 2 61 0 214 211 0 0 chr9 27650743 27650781 -90211846 + (TA)n Simple_repeat Simple_repeat 1 38 0 754 230 34 49 chr9 27650784 27651049 -90211578 - L1M4 LINE L1 -944 5202 4942 381 300 0 33 chr9 27651062 27651182 -90211445 - MER21B LTR ERV1 -415 448 333 325 264 118 18 chr9 27651238 27651348 -90211279 + L2 LINE L2 3186 3306 -7 361 264 164 0 chr9 27651526 27651666 -90210961 - MIR SINE MIR -25 237 75 307 323 111 14 chr9 27652320 27652501 -90210126 + MIR SINE MIR 8 203 -59 2483 198 20 6 chr9 27654753 27655294 -90207333 + L1MB8 LINE L1 5608 6156 -22 352 261 169 8 chr9 27656112 27656242 -90206385 - L2 LINE L2 -3 3310 3160 193 171 24 24 chr9 27656391 27656432 -90206195 - L2 LINE L2 -375 2938 2898 196 302 101 82 chr9 27656551 27656819 -90205808 - L2 LINE L2 -585 2729 2457 506 267 34 0 chr9 27657147 27657293 -90205334 + LTR16A1 LTR ERVL 307 457 0 1055 298 92 49 chr9 27657438 27658052 -90204575 + L2 LINE L2 1059 1646 -1667 486 0 0 0 chr9 27658052 27658106 -90204521 + (TG)n Simple_repeat Simple_repeat 2 55 0 1055 298 92 49 chr9 27658106 27658188 -90204439 + L2 LINE L2 1646 3313 0 226 175 12 50 chr9 27658400 27658480 -90204147 + MER2 DNA MER2_type 133 209 -136 224 167 21 0 chr9 27658473 27658521 -90204106 + (TTA)n Simple_repeat Simple_repeat 2 50 0 * 208 287 85 32 chr9 27659154 27659248 -90203379 - MIR SINE MIR -64 144 46 252 158 0 70 chr9 27660094 27660151 -90202476 + L2 LINE L2 3261 3313 0 333 291 47 0 chr9 27663030 27663116 -90199511 - L2 LINE L2 -14 3258 3169 225 319 155 33 chr9 27663866 27664170 -90198457 + L2 LINE L2 2632 2972 -342 216 0 0 0 chr9 27664309 27664333 -90198294 + (T)n Simple_repeat Simple_repeat 1 24 0 1818 54 5 0 chr9 27664349 27664572 -90198055 - AluY SINE Alu -87 224 1 489 237 44 0 chr9 27664634 27664748 -90197879 + MER58B DNA MER1_type 222 340 -1 321 252 194 0 chr9 27664750 27664853 -90197774 + L2 LINE L2 3191 3313 0 560 247 98 81 chr9 27666348 27666644 -90195983 - MLT1J LTR MaLR -87 424 124 216 0 0 0 chr9 27666644 27666668 -90195959 + (A)n Simple_repeat Simple_repeat 1 24 0 214 406 0 10 chr9 27666826 27666922 -90195705 + L2 LINE L2 3136 3230 -42 1750 179 17 17 chr9 27667511 27667862 -90194765 + MLT1A1 LTR MaLR 15 365 0 357 278 40 53 chr9 27668091 27668242 -90194385 + MIR SINE MIR 26 174 -88 254 356 91 0 chr9 27670144 27670276 -90192351 - L2 LINE L2 -2 3311 3168 1189 266 14 36 chr9 27670345 27670759 -90191868 - L1ME1 LINE L1 -67 6099 5695 256 312 75 0 chr9 27671137 27671230 -90191397 + L2 LINE L2 3168 3267 -5 316 300 97 48 chr9 27671910 27672137 -90190490 + L2 LINE L2 3076 3313 0 392 331 106 31 chr9 27672573 27672827 -90189800 - L3 LINE CR1 -499 1078 806 221 296 91 38 chr9 27674221 27674353 -90188274 - MIR SINE MIR -123 139 1 1005 341 44 13 chr9 27674365 27674816 -90187811 - L3 LINE CR1 -99 1478 1014 345 294 147 42 chr9 27675216 27675481 -90187146 - L3 LINE CR1 -689 888 596 549 294 138 4 chr9 27675753 27675984 -90186643 - MIR SINE MIR 0 262 1 488 316 29 19 chr9 27677515 27677724 -90184903 - MIR SINE MIR 0 262 52 317 320 111 0 chr9 27678570 27678723 -90183904 + MIR SINE MIR 87 256 -6 1149 301 98 58 chr9 27679006 27679656 -90182971 - MER115 DNA AcHobo -1 692 17 551 200 185 0 chr9 27680451 27680581 -90182046 - MER5B DNA MER1_type -22 156 3 500 246 16 0 chr9 27680797 27680923 -90181704 + MER94 DNA DNA 7 134 0 277 355 169 0 chr9 27680949 27681073 -90181554 + L2 LINE L2 3119 3263 -9 748 252 117 22 chr9 27681088 27681318 -90181309 + MIR SINE MIR 11 262 0 459 274 20 27 chr9 27681408 27681554 -90181073 - MIR SINE MIR 0 262 118 927 146 43 0 chr9 27682111 27682296 -90180331 + L1PBa LINE L1 3 195 -6668 * 2471 135 147 171 chr9 27682281 27682780 -90179847 + L1PBa LINE L1 620 1130 -5733 2306 75 17 0 chr9 27682780 27683073 -90179554 - AluSg1 SINE Alu -11 298 1 1174 139 0 0 chr9 27683073 27683239 -90179388 - AluSq SINE Alu -14 299 134 2267 111 0 10 chr9 27683239 27683545 -90179082 - AluSq SINE Alu -10 303 1 2471 135 147 171 chr9 27683545 27683907 -90178720 + L1PBa LINE L1 1127 1623 -5240 402 283 99 7 chr9 27684034 27684186 -90178441 - L2 LINE L2 -5 3308 3143 293 313 24 0 chr9 27684798 27684881 -90177746 - MIR3 SINE MIR -14 194 110 203 0 37 0 chr9 27685024 27685051 -90177576 + (TG)n Simple_repeat Simple_repeat 1 28 0 1752 162 123 3 chr9 27685126 27685485 -90177142 - MLT2C2 LTR ERVL -62 402 1 294 370 81 6 chr9 27685496 27685669 -90176958 - MIR SINE MIR -75 187 2 349 116 246 0 chr9 27685950 27686019 -90176608 + MLT2D LTR ERVL 58 143 -271 183 222 0 0 chr9 27686037 27686082 -90176545 + (CA)n Simple_repeat Simple_repeat 1 45 0 640 296 37 23 chr9 27686947 27687163 -90175464 + MIR SINE MIR 32 250 -12 1469 227 46 37 chr9 27690204 27690640 -90171987 - L1M1 LINE L1 -6973 592 153 234 0 0 0 chr9 27690643 27690669 -90171958 + (TCTCCC)n Simple_repeat Simple_repeat 6 31 0 5629 122 42 23 chr9 27690673 27692672 -90169955 + SVA Other Other 51 1369 -17 242 28 0 28 chr9 27692680 27692716 -90169911 + (TAA)n Simple_repeat Simple_repeat 2 36 0 702 170 7 54 chr9 27692716 27692863 -90169764 - L1M1 LINE L1 -7409 156 17 1336 311 59 19 chr9 27692873 27693991 -90168636 + L1M4 LINE L1 2788 3950 -2196 7300 177 22 22 chr9 27694636 27696278 -90166349 + L1MA4 LINE L1 3567 5207 -939 5260 148 21 19 chr9 27696291 27697325 -90165302 + L1MA4 LINE L1 5254 6289 -11 25 0 0 0 chr9 27697482 27697507 -90165120 + AT_rich Low_complexity Low_complexity 1 25 0 930 80 0 0 chr9 27697532 27697645 -90164982 + AluSg/x SINE Alu 180 292 -20 21 0 0 0 chr9 27697665 27697686 -90164941 + AT_rich Low_complexity Low_complexity 1 21 0 1750 66 8 12 chr9 27697687 27697929 -90164698 + AluY SINE Alu 36 276 -35 5516 133 12 29 chr9 27698029 27698278 -90164349 - L1MA1 LINE L1 -278 7443 7191 1943 75 60 0 chr9 27698278 27698571 -90164056 - AluY SINE Alu 0 309 1 5516 133 12 29 chr9 27698571 27699667 -90162960 - L1MA1 LINE L1 -530 7191 6134 1946 87 43 20 chr9 27699667 27699967 -90162660 - AluY SINE Alu -4 307 1 5516 133 12 29 chr9 27699967 27700462 -90162165 - L1MA1 LINE L1 -1587 6134 5632 4381 110 10 7 chr9 27700571 27701299 -90161328 - L1MA1 LINE L1 -4487 3078 2349 3208 163 8 0 chr9 27701291 27701886 -90160741 - L1P LINE L1 -3170 2976 2377 * 2703 173 24 6 chr9 27701901 27703451 -90159176 - L1MA1 LINE L1 -5214 2351 625 21 0 0 0 chr9 27704165 27704186 -90158441 + AT_rich Low_complexity Low_complexity 1 21 0 325 348 37 18 chr9 27704802 27704966 -90157661 + L2 LINE L2 2921 3087 -185 217 292 34 0 chr9 27705571 27705660 -90156967 + L3b LINE CR1 1321 1412 -171 333 302 110 80 chr9 27706113 27706477 -90156150 + L1MEd LINE L1 261 635 -5737 490 320 86 22 chr9 27706537 27707025 -90155602 + L1MEd LINE L1 700 1218 -5154 638 247 22 22 chr9 27707035 27707224 -90155403 + MLT1F1 LTR MaLR 3 197 -369 460 176 0 17 chr9 27707245 27707364 -90155263 + CT-rich Low_complexity Low_complexity 2 118 0 941 194 148 0 chr9 27707413 27707630 -90154997 + MLT1F1 LTR MaLR 312 560 -7 607 282 49 80 chr9 27707630 27708032 -90154595 + L1MEd LINE L1 1115 1510 -4862 15971 32 0 0 chr9 27708276 27710721 -90151906 + L1P LINE L1 2248 4692 -1454 315 317 50 19 chr9 27710724 27710751 -90151876 + L1MEd LINE L1 2502 2527 -3855 2333 102 3 0 chr9 27710751 27711055 -90151572 + AluSp SINE Alu 1 305 -8 315 317 50 19 chr9 27711055 27711289 -90151338 + L1MEd LINE L1 2527 2771 -3611 27 0 0 0 chr9 27711403 27711430 -90151197 + AT_rich Low_complexity Low_complexity 1 27 0 324 314 46 26 chr9 27711430 27711583 -90151044 + L1MEd LINE L1 2881 3036 -3346 1184 126 30 0 chr9 27711607 27711806 -90150821 - L1MA1 LINE L1 0 6302 6098 8366 197 21 1 chr9 27711989 27714139 -90148488 - L1 LINE L1 -2140 5425 3231 255 337 10 20 chr9 27714403 27714504 -90148123 - L2 LINE L2 0 3272 3173 482 335 38 8 chr9 27714784 27714984 -90147643 + MIR SINE MIR 3 206 -56 309 297 138 43 chr9 27715154 27715386 -90147241 + L2 LINE L2 3043 3296 -17 225 256 24 61 chr9 27715626 27715708 -90146919 + L2 LINE L2 3193 3271 -1 1005 173 17 11 chr9 27716998 27717177 -90145450 - AluJo SINE Alu -132 180 1 292 313 83 46 chr9 27717488 27717705 -90144922 + L2 LINE L2 2252 2476 -838 2266 110 0 16 chr9 27717913 27718230 -90144397 - AluSx SINE Alu 0 312 1 202 373 63 47 chr9 27718554 27718809 -90143818 + L2 LINE L2 2485 2743 -571 1314 173 79 47 chr9 27719253 27719530 -90143097 + AluJo SINE Alu 1 286 -26 186 189 0 0 chr9 27720032 27720069 -90142558 + A-rich Low_complexity Low_complexity 1 37 0 2717 26 0 3 chr9 27720119 27720427 -90142200 + AluYa5 SINE Alu 1 307 -4 1083 323 74 35 chr9 27722522 27723073 -90139554 + L3 LINE CR1 2 574 -1003 220 314 137 13 chr9 27723204 27723357 -90139270 + L3 LINE CR1 934 1105 -472 2011 156 6 16 chr9 27723360 27723680 -90138947 + MER1B DNA MER1_type 23 339 0 226 344 0 0 chr9 27723833 27723894 -90138733 + L3 LINE CR1 1411 1471 -106 21 0 0 0 chr9 27724425 27724446 -90138181 + AT_rich Low_complexity Low_complexity 1 21 0 969 191 22 16 chr9 27725437 27725620 -90137007 - MER5A DNA MER1_type 0 189 6 281 292 29 166 chr9 27725603 27725880 -90136747 + L2 LINE L2 3028 3266 -6 * 180 0 0 0 chr9 27725927 27725947 -90136680 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 201 39 0 0 chr9 27725946 27725972 -90136655 + (TG)n Simple_repeat Simple_repeat 2 27 0 2052 162 26 6 chr9 27725977 27726317 -90136310 - MER7A DNA MER2_type 0 346 2 213 175 0 0 chr9 27726319 27726359 -90136268 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 311 285 114 19 chr9 27726649 27726807 -90135820 - L1MCb LINE L1 -4848 1197 1025 192 364 50 43 chr9 27728556 27728696 -90133931 + MIR SINE MIR 20 160 -102 23 0 0 0 chr9 27728696 27728719 -90133908 + AT_rich Low_complexity Low_complexity 1 23 0 232 206 44 44 chr9 27728845 27728913 -90133714 - MLT1G1 LTR MaLR -28 567 500 233 276 92 10 chr9 27729096 27729194 -90133433 - MLT1I LTR MaLR -240 169 64 34 0 0 0 chr9 27729598 27729632 -90132995 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr9 27729632 27729657 -90132970 + (TA)n Simple_repeat Simple_repeat 2 26 0 971 138 6 19 chr9 27729890 27730049 -90132578 - THE1-int LTR MaLR -183 1397 1241 302 192 0 0 chr9 27730313 27730365 -90132262 - MLT1E3 LTR MaLR -572 52 1 21 36 0 0 chr9 27730373 27730401 -90132226 + AT_rich Low_complexity Low_complexity 1 28 0 333 330 124 58 chr9 27730449 27730883 -90131744 - L3 LINE CR1 -24 1553 1091 263 260 40 20 chr9 27730942 27731042 -90131585 + L1P LINE L1 3828 3929 -2217 22 0 0 0 chr9 27731042 27731064 -90131563 + AT_rich Low_complexity Low_complexity 1 22 0 186 133 0 0 chr9 27731526 27731556 -90131071 + (TA)n Simple_repeat Simple_repeat 1 30 0 313 312 73 65 chr9 27731578 27731991 -90130636 + L1M4 LINE L1 4428 4843 -1303 7687 94 29 5 chr9 27732778 27733964 -90128663 + L1PB1 LINE L1 1529 2742 -4121 11061 187 15 13 chr9 27733976 27737409 -90125218 + L1PB1 LINE L1 3431 6864 -3 377 304 27 133 chr9 27737431 27737806 -90124821 - L2 LINE L2 -5 3267 2933 1032 136 5 15 chr9 27738113 27738311 -90124316 + L1MA8 LINE L1 6078 6273 -18 5660 166 36 10 chr9 27738311 27739876 -90122751 - L1MA4 LINE L1 -14 6286 4666 1106 190 112 20 chr9 27739876 27740171 -90122456 + MER31A LTR ERV1 164 485 0 248 149 0 21 chr9 27740328 27740375 -90122252 + HAL1 LINE L1 2104 2149 -358 349 300 50 31 chr9 27740403 27740563 -90122064 + L1ME3 LINE L1 5724 5886 -276 24 32 0 0 chr9 27740571 27740602 -90122025 + AT_rich Low_complexity Low_complexity 1 31 0 223 294 322 0 chr9 27740875 27741021 -90121606 + MIR SINE MIR 59 251 -11 533 238 25 0 chr9 27741413 27741535 -90121092 + MER94 DNA DNA 1 125 -9 317 246 156 25 chr9 27741545 27741667 -90120960 - MIR SINE MIR -74 188 51 217 299 26 8 chr9 27742542 27742633 -90119994 + MIR SINE MIR 47 140 -68 664 266 15 70 chr9 27742635 27742834 -90119793 - MER5A DNA MER1_type 0 189 2 289 279 29 10 chr9 27745220 27745324 -90117303 + L2 LINE L2 2680 2785 -529 355 214 325 0 chr9 27745324 27745450 -90117177 + MIR SINE MIR 80 246 -16 371 377 49 38 chr9 27745494 27745863 -90116764 + L2 LINE L2 2852 3224 -48 574 283 107 37 chr9 27745899 27746143 -90116484 - MLT1I LTR MaLR -49 360 100 290 351 18 9 chr9 27746635 27746746 -90115881 - MIR3 SINE MIR -85 123 12 292 232 2 5 chr9 27746794 27746868 -90115759 - MIR SINE MIR -65 143 75 186 284 40 40 chr9 27746909 27746983 -90115644 + L2 LINE L2 3239 3312 -1 186 167 0 0 chr9 27746984 27747020 -90115607 + (AATTG)n Simple_repeat Simple_repeat 2 37 0 230 313 200 13 chr9 27747796 27747946 -90114681 + MIR SINE MIR 20 197 -65 524 281 21 46 chr9 27748242 27748439 -90114188 - MIR SINE MIR -40 222 33 409 235 0 0 chr9 27748624 27748705 -90113922 - MER63 DNA MER1_type -84 752 672 197 282 28 56 chr9 27748706 27748777 -90113850 - L2 LINE L2 -272 3000 2932 3941 163 108 94 chr9 27749029 27749600 -90113027 - L1MC3 LINE L1 -1 7784 7222 309 171 40 26 chr9 27749600 27749676 -90112951 - MLT1F1 LTR MaLR -456 111 35 3941 163 108 94 chr9 27749676 27750144 -90112483 - L1MC3 LINE L1 -563 7222 6655 1176 177 120 57 chr9 27750145 27750479 -90112148 - MLT1A1 LTR MaLR 0 365 11 2827 182 56 14 chr9 27750489 27751078 -90111549 - L1MC3 LINE L1 -1127 6658 6045 303 341 54 0 chr9 27753070 27753199 -90109428 + L2 LINE L2 3177 3312 -1 23 33 0 0 chr9 27754596 27754626 -90108001 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr9 27755055 27755079 -90107548 + AT_rich Low_complexity Low_complexity 1 24 0 2192 115 56 11 chr9 27755129 27755486 -90107141 - THE1C LTR MaLR -2 373 1 2068 123 31 0 chr9 27755542 27755834 -90106793 - AluSx SINE Alu -11 301 1 1929 157 219 41 chr9 27756073 27756565 -90106062 - LTR18B LTR ERVL -34 580 1 597 269 137 23 chr9 27757165 27757384 -90105243 + MIR SINE MIR 17 260 -2 1209 113 72 23 chr9 27757610 27757641 -90104986 - L1MA1 LINE L1 0 6302 6274 192 40 0 0 chr9 27757641 27757666 -90104961 + (TA)n Simple_repeat Simple_repeat 1 25 0 1209 113 72 23 chr9 27757666 27757855 -90104772 - L1MA1 LINE L1 -28 6274 6071 308 320 227 20 chr9 27757878 27758081 -90104546 - MIR SINE MIR -12 250 6 202 333 0 0 chr9 27758274 27758331 -90104296 - MER5A DNA MER1_type -98 91 35 263 283 131 10 chr9 27758487 27758586 -90104041 - MIR SINE MIR -120 142 32 2738 71 0 0 chr9 27758795 27759147 -90103480 - L1PA6 LINE L1 -5 6149 5798 244 321 10 114 chr9 27759949 27760142 -90102485 - L2 LINE L2 0 3272 3100 314 343 19 8 chr9 27761629 27761772 -90100855 + MIR SINE MIR 2 147 -67 1090 232 129 72 chr9 27761776 27762250 -90100377 + MLT1D LTR MaLR 5 505 0 272 297 0 33 chr9 27762645 27762736 -90099891 - MIR SINE MIR 0 262 175 22 0 0 0 chr9 27762996 27763018 -90099609 + AT_rich Low_complexity Low_complexity 1 22 0 259 329 53 86 chr9 27763201 27763538 -90099089 + L2 LINE L2 2934 3259 -13 224 367 0 0 chr9 27763627 27763706 -90098921 - L2 LINE L2 -3 3310 3232 498 214 0 19 chr9 27763835 27763938 -90098689 + MER5A DNA MER1_type 5 105 -84 190 255 0 0 chr9 27763950 27763997 -90098630 + MIR SINE MIR 216 262 0 714 255 124 92 chr9 27764535 27765025 -90097602 - MLT1J LTR MaLR -4 507 2 301 311 0 25 chr9 27765077 27765196 -90097431 - L2 LINE L2 -970 2344 2229 254 284 55 28 chr9 27765830 27765939 -90096688 + L3 LINE CR1 1092 1203 -374 4981 145 16 5 chr9 27766060 27767557 -90095070 + L1MA8 LINE L1 4592 6107 -184 1100 202 108 23 chr9 27767558 27767918 -90094709 + MSTC LTR MaLR 1 423 -5 721 190 39 0 chr9 27767923 27768102 -90094525 + L1MA8 LINE L1 6104 6289 -2 350 339 42 25 chr9 27768179 27768624 -90094003 + L1M4 LINE L1 3976 4433 -1713 491 222 9 19 chr9 27769640 27769748 -90092879 + L1ME LINE L1 5536 5642 -528 1651 353 74 12 chr9 27769765 27770831 -90091796 - L2 LINE L2 0 3313 2174 998 244 79 16 chr9 27771341 27771656 -90090971 + LTR16A LTR ERVL 113 447 -3 1120 208 29 45 chr9 27772266 27772612 -90090015 + MER33 DNA MER1_type 1 319 -5 288 0 0 0 chr9 27772872 27772904 -90089723 + (TTTG)n Simple_repeat Simple_repeat 4 35 0 2597 246 17 31 chr9 27773200 27773847 -90088780 + L1PA15 LINE L1 11 648 -6933 2065 174 28 0 chr9 27773847 27774204 -90088423 + MER50 LTR ERV1 1 367 -367 1361 174 71 35 chr9 27774200 27774510 -90088117 + LTR9 LTR ERV1 292 612 0 * 17506 197 23 12 chr9 27774522 27780093 -90082534 + L1PA15 LINE L1 1968 7601 -2 374 200 80 40 chr9 27780611 27780736 -90081891 - MER102a DNA MER1_type -2 328 199 1543 143 95 76 chr9 27780767 27781124 -90081503 - L1MA9 LINE L1 -13 6299 5936 5555 57 4 0 chr9 27781406 27782105 -90080522 + L1PA7 LINE L1 5453 6154 0 212 100 25 0 chr9 27782769 27782809 -90079818 + (GA)n Simple_repeat Simple_repeat 2 42 0 182 315 0 0 chr9 27784102 27784156 -90078471 + MIR SINE MIR 44 97 -111 2110 119 17 0 chr9 27784357 27784651 -90077976 + AluSc SINE Alu 4 302 -7 397 200 0 0 chr9 27784844 27784914 -90077713 - L2 LINE L2 -50 3222 3153 244 342 63 32 chr9 27785422 27785580 -90077047 - L2 LINE L2 -11 3302 3140 277 221 0 0 chr9 27785585 27785653 -90076974 - MLT1L LTR MaLR -4 611 544 1077 265 73 9 chr9 27785803 27786131 -90076496 + L1MC4 LINE L1 6458 6806 -1236 856 249 6 4 chr9 27786131 27786348 -90076279 + L1MC4 LINE L1 7485 7788 -207 1853 135 54 96 chr9 27787350 27787691 -90074936 + MLT1B LTR MaLR 1 324 -66 2219 113 0 0 chr9 27787691 27788002 -90074625 - AluSx SINE Alu -1 311 1 1853 135 54 96 chr9 27788002 27788067 -90074560 + MLT1B LTR MaLR 324 390 0 28 0 0 0 chr9 27788249 27788277 -90074350 + AT_rich Low_complexity Low_complexity 1 28 0 289 353 49 22 chr9 27789282 27789466 -90073161 + L2 LINE L2 3122 3310 -3 1480 194 41 9 chr9 27789957 27790276 -90072351 + L1MB5 LINE L1 5536 5864 -310 4186 157 13 12 chr9 27790279 27791045 -90071582 - L1MA8 LINE L1 -4 6287 5521 893 223 5 28 chr9 27791045 27791260 -90071367 + L1MB5 LINE L1 5959 6168 -6 2665 136 22 11 chr9 27791589 27792037 -90070590 + L1MA10 LINE L1 5880 6332 -2 2138 94 0 85 chr9 27792046 27792375 -90070252 + AluSg SINE Alu 1 301 -9 6883 66 6 0 chr9 27792375 27793509 -90069118 + L1PA7 LINE L1 5014 6154 0 271 195 98 49 chr9 27794160 27794283 -90068344 - L1ME4a LINE L1 -2 6119 5991 245 359 18 100 chr9 27794511 27794731 -90067896 + L2 LINE L2 3009 3210 -62 2671 229 93 25 chr9 27795182 27795751 -90066876 + L1MEc LINE L1 44 680 -5716 2658 107 0 3 chr9 27795751 27796114 -90066513 + THE1B LTR MaLR 1 362 -2 2671 229 93 25 chr9 27796114 27796311 -90066316 + L1MEc LINE L1 680 862 -5534 24 53 0 0 chr9 27797308 27797346 -90065281 + GC_rich Low_complexity Low_complexity 1 38 0 240 185 0 0 chr9 27797944 27797998 -90064629 + (CA)n Simple_repeat Simple_repeat 1 54 0 2264 107 0 0 chr9 27798285 27798583 -90064044 + AluSx SINE Alu 1 298 -14 523 305 8 0 chr9 27798600 27798728 -90063899 + L2 LINE L2 3176 3304 -9 1059 283 66 42 chr9 27798803 27799256 -90063371 - MLT1J LTR MaLR -17 494 31 572 100 0 0 chr9 27799706 27799786 -90062841 - MADE1 DNA Mariner 0 80 1 1077 260 22 6 chr9 27801646 27801969 -90060658 + L1MA9 LINE L1 5937 6264 -48 3932 186 64 9 chr9 27801978 27802795 -90059832 - L1MB5 LINE L1 -31 6143 5282 225 333 13 13 chr9 27803050 27803125 -90059502 - L2 LINE L2 -3 3269 3195 1362 176 48 65 chr9 27803720 27804010 -90058617 + AluJo SINE Alu 5 289 -23 39 0 0 0 chr9 27804011 27804050 -90058577 + AT_rich Low_complexity Low_complexity 1 39 0 425 366 17 6 chr9 27804050 27804222 -90058405 + MIR SINE MIR 3 176 -86 9192 143 26 8 chr9 27804724 27806245 -90056382 - Ricksha DNA DNA -7 3239 1692 310 95 0 0 chr9 27806249 27806291 -90056336 - Ricksha DNA DNA -2963 283 242 570 189 9 0 chr9 27806310 27806416 -90056211 - Ricksha DNA DNA -3132 114 8 249 231 108 0 chr9 27806504 27806569 -90056058 + LTR50 LTR ERVL 212 283 -512 724 239 147 7 chr9 27806647 27806932 -90055695 + LTR50 LTR ERVL 471 795 0 647 269 64 5 chr9 27807137 27807356 -90055271 + L1MB8 LINE L1 5941 6172 -6 403 346 54 39 chr9 27807695 27807900 -90054727 - MIR SINE MIR -6 256 49 22 0 0 0 chr9 27809111 27809133 -90053494 + AT_rich Low_complexity Low_complexity 1 22 0 363 60 0 0 chr9 27809431 27809481 -90053146 + (CATA)n Simple_repeat Simple_repeat 2 51 0 272 253 0 13 chr9 27809636 27809711 -90052916 - LTR33A LTR ERVL -4 519 446 330 286 18 28 chr9 27810158 27810327 -90052300 - MLT1I LTR MaLR -263 175 12 2417 159 24 5 chr9 27810975 27811390 -90051237 - MSTB LTR MaLR -3 423 1 342 357 180 24 chr9 27811732 27812326 -90050301 + L2 LINE L2 1947 2633 -681 344 336 0 9 chr9 27813159 27813275 -90049352 - MIR3 SINE MIR -6 202 88 180 125 0 0 chr9 27813858 27813890 -90048737 + (CAA)n Simple_repeat Simple_repeat 3 34 0 731 217 127 0 chr9 27814200 27814357 -90048270 - AluJb SINE Alu -6 306 130 198 71 0 0 chr9 27814363 27814391 -90048236 + (TTG)n Simple_repeat Simple_repeat 2 29 0 300 324 18 65 chr9 27814410 27814580 -90048047 + L3 LINE CR1 1344 1505 -72 4737 152 38 19 chr9 27814580 27815865 -90046762 + L1MA5 LINE L1 4876 6193 -107 571 215 8 0 chr9 27817181 27817311 -90045316 - MER97c DNA MER1_type? -915 175 45 201 282 125 24 chr9 27817911 27818085 -90044542 - MIR SINE MIR -72 136 3 4783 170 38 27 chr9 27818718 27820718 -90041909 - L1MA9 LINE L1 -1 6375 4356 16889 30 0 0 chr9 27820719 27822846 -90039781 + L1P LINE L1 2134 4260 -1886 2783 148 8 24 chr9 27822854 27822935 -90039692 - L1MA9 LINE L1 -1870 4340 4259 2721 81 3 18 chr9 27822935 27823316 -90039311 - L1PA8A LINE L1 -1 6130 5756 2783 148 8 24 chr9 27823316 27823739 -90038888 - L1MA9 LINE L1 -1951 4259 3844 769 244 6 0 chr9 27823739 27823899 -90038728 - FRAM SINE Alu -5 161 1 2133 146 39 17 chr9 27823925 27824281 -90038346 - THE1B LTR MaLR 0 364 1 9876 109 43 8 chr9 27824281 27825704 -90036923 - THE1B-int LTR MaLR 0 1580 99 1785 146 55 55 chr9 27825704 27826068 -90036559 - THE1B LTR MaLR 0 364 1 9876 109 43 8 chr9 27826068 27826171 -90036456 - THE1B-int LTR MaLR -1481 99 1 2215 134 33 19 chr9 27826171 27826530 -90036097 - THE1B LTR MaLR 0 364 1 645 171 36 0 chr9 27826530 27826640 -90035987 - FLAM_C SINE Alu -18 115 1 3801 233 74 16 chr9 27826642 27827508 -90035119 - L1MA9 LINE L1 -2361 3849 2882 2073 150 0 0 chr9 27827508 27827801 -90034826 - AluSx SINE Alu -19 293 1 3801 233 74 16 chr9 27827801 27828214 -90034413 - L1MA9 LINE L1 -3328 2882 2495 4887 233 84 40 chr9 27828219 27828537 -90034090 - L1MA9 LINE L1 -4357 1854 1552 2259 89 0 49 chr9 27828537 27828862 -90033765 - AluSq SINE Alu -2 311 3 4887 233 84 40 chr9 27828862 27828873 -90033754 - L1MA9 LINE L1 -4659 1552 1543 1799 69 52 0 chr9 27828873 27829136 -90033491 - AluY SINE Alu 0 315 41 4887 233 84 40 chr9 27829136 27830608 -90032019 - L1MA9 LINE L1 -4668 1543 2 2541 75 0 0 chr9 27830875 27831183 -90031444 - AluY SINE Alu -3 308 1 285 340 32 45 chr9 27831461 27831617 -90031010 + L2 LINE L2 2897 3050 -222 261 0 0 0 chr9 27831796 27831825 -90030802 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 362 261 11 0 chr9 27833687 27833779 -90028848 - MER20 DNA MER1_type -9 210 118 2387 114 8 16 chr9 27835153 27835522 -90027105 + THE1C LTR MaLR 1 366 -9 1816 241 104 34 chr9 27835594 27836168 -90026459 + MLT1G1 LTR MaLR 1 549 0 180 97 0 0 chr9 27836265 27836296 -90026331 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 2335 82 0 10 chr9 27836296 27836590 -90026037 - AluY SINE Alu -20 291 1 25 65 0 0 chr9 27836610 27836656 -90025971 + AT_rich Low_complexity Low_complexity 1 46 0 413 291 57 24 chr9 27836781 27836991 -90025636 + L1ME4a LINE L1 5879 6095 -26 1238 239 3 58 chr9 27838438 27838798 -90023829 + MLT2B1 LTR ERVL 1 340 -180 2408 84 0 0 chr9 27839154 27839452 -90023175 + AluY SINE Alu 1 298 -13 1358 273 50 39 chr9 27839815 27840350 -90022277 + MER68 LTR ERV1 10 550 -12 399 278 112 58 chr9 27840373 27840578 -90022049 + MER68-int LTR ERV1 18 233 -3958 * 857 298 36 28 chr9 27840422 27840784 -90021843 + HERVL68 LTR ERVL 28 392 -2645 * 3898 211 50 40 chr9 27840751 27841877 -90020750 + HERVL68 LTR ERVL 517 1653 -1384 797 175 41 6 chr9 27841882 27842053 -90020574 + HERVL68 LTR ERVL 2842 3018 -19 1192 211 52 4 chr9 27842058 27842309 -90020318 + MER68 LTR ERV1 6 268 -294 1367 248 26 28 chr9 27842320 27842761 -90019866 + MLT1C LTR MaLR 6 447 -20 1746 142 78 36 chr9 27842761 27842953 -90019674 + THE1C LTR MaLR 1 184 -191 231 36 0 0 chr9 27842953 27842981 -90019646 + (TC)n Simple_repeat Simple_repeat 1 28 0 1746 142 78 36 chr9 27842981 27843148 -90019479 + THE1C LTR MaLR 184 375 0 1367 248 26 28 chr9 27843148 27843169 -90019458 + MLT1C LTR MaLR 447 467 0 699 277 21 35 chr9 27843171 27843460 -90019167 + MER68 LTR ERV1 272 556 -6 364 315 89 65 chr9 27843791 27844164 -90018463 + L1MEd LINE L1 931 1273 -1234 23 54 0 0 chr9 27844474 27844511 -90018116 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr9 27844794 27844826 -90017801 + AT_rich Low_complexity Low_complexity 1 32 0 783 172 0 0 chr9 27844921 27845043 -90017584 + FLAM_A SINE Alu 1 122 -11 311 300 88 6 chr9 27845208 27845368 -90017259 + L1MEd LINE L1 2341 2513 -3633 630 274 112 82 chr9 27845484 27846009 -90016618 + L1MEd LINE L1 2651 3191 -2955 746 125 9 0 chr9 27846082 27846194 -90016433 - LTR62 LTR ERVK -2 717 605 6925 51 2 2 chr9 27846294 27847380 -90015247 + L1P2 LINE L1 4457 5542 -612 1571 102 49 11 chr9 27847483 27847747 -90014880 - LTR62 LTR ERVK -445 274 1 311 278 78 41 chr9 27847758 27848103 -90014524 + L1MEd LINE L1 3397 3754 -2392 1206 185 141 7 chr9 27848106 27848403 -90014224 + MLT1C LTR MaLR 1 337 -130 1616 167 3 45 chr9 27848418 27848601 -90014026 + AluJb SINE Alu 2 168 -144 8307 54 4 4 chr9 27848601 27849608 -90013019 - LTR13 LTR ERVK 0 1007 1 1616 167 3 45 chr9 27849608 27849735 -90012892 + AluJb SINE Alu 168 299 -13 439 233 8 42 chr9 27849743 27849863 -90012764 + MLT1C LTR MaLR 352 467 0 673 242 141 58 chr9 27850170 27850497 -90012130 - MLT1H LTR MaLR 0 549 196 2065 120 10 20 chr9 27851479 27851778 -90010849 + AluSc SINE Alu 1 296 -13 751 244 49 0 chr9 27852547 27852752 -90009875 - L1ME3 LINE L1 -8 6154 5940 2586 236 121 19 chr9 27852755 27853674 -90008953 - L1MEc LINE L1 -5373 1023 11 553 197 33 0 chr9 27853652 27853774 -90008853 - L1ME3 LINE L1 -214 6017 5892 * 23 54 0 0 chr9 27853807 27853844 -90008783 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr9 27854699 27854744 -90007883 + AT_rich Low_complexity Low_complexity 1 45 0 1582 130 9 0 chr9 27855086 27855309 -90007318 + AluSp SINE Alu 65 289 -24 421 136 0 0 chr9 27855446 27855512 -90007115 + Alu SINE Alu 223 288 -23 6792 50 27 1 chr9 27856583 27858300 -90004327 + L1PA7 LINE L1 4409 6154 0 185 197 0 115 chr9 27860092 27860153 -90002474 - MIR SINE MIR -100 162 109 213 121 0 0 chr9 27861060 27861093 -90001534 + (TC)n Simple_repeat Simple_repeat 1 33 0 2431 84 0 0 chr9 27862577 27862885 -89999742 + AluY SINE Alu 1 308 -3 329 347 167 7 chr9 27863626 27863914 -89998713 - L2 LINE L2 -342 2972 2639 30 59 0 0 chr9 27865351 27865402 -89997225 + AT_rich Low_complexity Low_complexity 1 51 0 189 325 0 52 chr9 27867147 27867224 -89995403 + MIR SINE MIR 179 251 -11 2680 42 0 0 chr9 27868703 27869033 -89993594 - AluY SINE Alu 0 330 1 207 0 0 0 chr9 27869130 27869153 -89993474 + (A)n Simple_repeat Simple_repeat 1 23 0 2466 129 8 30 chr9 27869336 27869708 -89992919 - THE1B LTR MaLR 0 364 1 260 348 84 22 chr9 27871726 27871904 -89990723 + L3 LINE CR1 1328 1516 -61 319 75 0 0 chr9 27872222 27872262 -89990365 + LTR23 LTR ERV1 320 359 -78 27 0 0 0 chr9 27872262 27872289 -89990338 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr9 27874174 27874200 -89988427 + AT_rich Low_complexity Low_complexity 1 26 0 185 159 23 0 chr9 27875485 27875529 -89987098 + CT-rich Low_complexity Low_complexity 1 45 0 2568 44 3 0 chr9 27875681 27875979 -89986648 - AluY SINE Alu -12 299 1 315 266 195 8 chr9 27878912 27879040 -89983587 + MIR SINE MIR 44 195 -67 236 368 58 0 chr9 27879036 27879123 -89983504 - L2 LINE L2 -34 3238 3147 * 623 277 61 53 chr9 27879999 27880378 -89982249 + L1ME4a LINE L1 5582 5963 -158 226 250 0 22 chr9 27880409 27880501 -89982126 + L1MC4 LINE L1 6614 6703 -1339 243 256 98 0 chr9 27880523 27880605 -89982022 + L1MC4 LINE L1 6614 6703 -1339 222 214 0 0 chr9 27880610 27880652 -89981975 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 324 222 128 44 chr9 27880652 27880832 -89981795 + L1ME4a LINE L1 5927 6121 0 337 275 89 27 chr9 27883140 27883346 -89979281 + MIR SINE MIR 20 242 -20 211 326 79 22 chr9 27884473 27884562 -89978065 - L3 LINE CR1 -225 1352 1259 341 137 0 123 chr9 27885441 27885514 -89977113 - MADE1 DNA Mariner -2 78 15 1029 267 112 46 chr9 27886676 27886748 -89975879 + L2 LINE L2 1177 1243 -2071 1821 136 94 28 chr9 27886748 27887100 -89975527 - THE1C LTR MaLR 0 375 1 1029 267 112 46 chr9 27887100 27887413 -89975214 + L2 LINE L2 1243 1605 -1709 1641 215 31 22 chr9 27887413 27887771 -89974856 + MLT1A1 LTR MaLR 5 365 0 1029 267 112 46 chr9 27887771 27887882 -89974745 + L2 LINE L2 1605 1707 -1607 342 115 0 0 chr9 27887925 27887977 -89974650 + (TG)n Simple_repeat Simple_repeat 1 52 0 372 301 12 58 chr9 27887985 27888021 -89974606 - MIR3 SINE MIR -21 187 151 716 250 23 23 chr9 27888021 27888197 -89974430 - MER5B DNA MER1_type -1 177 2 372 301 12 58 chr9 27888197 27888333 -89974294 - MIR3 SINE MIR -57 151 23 541 264 50 33 chr9 27889099 27889281 -89973346 + MIR SINE MIR 8 192 -70 471 254 97 18 chr9 27889506 27889671 -89972956 + MIR SINE MIR 23 200 -62 505 273 87 61 chr9 27890341 27890686 -89971941 - LTR16A1 LTR ERVL 0 457 104 415 257 131 0 chr9 27891223 27891398 -89971229 + MER5C DNA MER1_type 127 324 0 639 241 32 80 chr9 27892487 27892736 -89969891 - MLT1K LTR MaLR -16 572 336 706 86 0 38 chr9 27893269 27893374 -89969253 - L1PA11 LINE L1 0 6174 6074 607 274 125 5 chr9 27894859 27895060 -89967567 + MIR SINE MIR 28 236 -26 731 283 93 28 chr9 27895466 27896051 -89966576 + L2 LINE L2 2647 3267 -5 205 323 32 11 chr9 27896116 27896209 -89966418 - L3 LINE CR1 -214 1363 1269 203 88 29 0 chr9 27896234 27896268 -89966359 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 369 136 0 0 chr9 27896271 27896337 -89966290 + (GGGA)n Simple_repeat Simple_repeat 3 68 0 279 219 237 0 chr9 27897349 27897463 -89965164 - MIR SINE MIR 0 262 122 345 282 54 47 chr9 27897509 27897658 -89964969 - MIR SINE MIR -93 169 20 213 215 41 93 chr9 27898383 27898493 -89964134 + MIR SINE MIR 43 147 -104 2121 141 0 0 chr9 27898537 27898835 -89963792 + AluSx SINE Alu 1 298 -14 209 0 0 89 chr9 27898836 27898881 -89963746 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 8776 61 14 151 chr9 27899044 27900647 -89961980 + SVA Other Other 3 1385 -1 554 336 39 57 chr9 27900722 27901005 -89961622 + L2 LINE L2 2995 3272 0 21 104 0 0 chr9 27901024 27901101 -89961526 + AT_rich Low_complexity Low_complexity 1 77 0 1228 216 110 58 chr9 27902006 27902482 -89960145 - MER39 LTR ERV1 -26 681 1 1616 190 3 13 chr9 27902633 27902943 -89959684 - AluJb SINE Alu -5 307 1 243 279 252 0 chr9 27902946 27903057 -89959570 + MIR SINE MIR 116 254 -8 201 94 0 0 chr9 27903057 27903089 -89959538 + (TTA)n Simple_repeat Simple_repeat 2 33 0 632 312 111 4 chr9 27903233 27903467 -89959160 - L2 LINE L2 -205 3108 2850 869 225 26 35 chr9 27903810 27904041 -89958586 - MIR SINE MIR 0 262 34 235 240 20 0 chr9 27906172 27906222 -89956405 - L2 LINE L2 -1 3271 3221 21 0 0 0 chr9 27906677 27906698 -89955929 + AT_rich Low_complexity Low_complexity 1 21 0 864 248 31 5 chr9 27906749 27906971 -89955656 + MIR SINE MIR 21 248 -14 1055 309 114 50 chr9 27906981 27907221 -89955406 + L3 LINE CR1 216 439 -1138 409 212 26 139 chr9 27907221 27907372 -89955255 + MER94 DNA DNA 1 134 0 1055 309 114 50 chr9 27907372 27907816 -89954811 + L3 LINE CR1 439 944 -633 375 195 273 23 chr9 27907924 27908052 -89954575 + L3 LINE CR1 1407 1566 -11 283 297 22 0 chr9 27909861 27909952 -89952675 + MIR SINE MIR 57 149 -113 217 290 14 0 chr9 27911066 27911135 -89951492 + MIR SINE MIR 177 246 -16 206 360 90 0 chr9 27911184 27911284 -89951343 + L2 LINE L2 3159 3267 -5 304 50 0 25 chr9 27911424 27911464 -89951163 - U2 snRNA snRNA -149 39 1 210 71 0 0 chr9 27913278 27913306 -89949321 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2170 96 0 0 chr9 27914761 27915077 -89947550 - AluSx SINE Alu 0 316 1 289 256 59 35 chr9 27915380 27915524 -89947103 + MIR SINE MIR 54 196 -12 27 0 0 0 chr9 27915992 27916019 -89946608 + AT_rich Low_complexity Low_complexity 1 27 0 1098 157 0 0 chr9 27916100 27916272 -89946355 - FRAM SINE Alu -10 166 1 198 216 247 52 chr9 27916383 27916412 -89946215 - L2 LINE L2 -4 3268 3246 1977 188 121 13 chr9 27916412 27916874 -89945753 - MER67D LTR ERV1 0 514 3 198 216 247 52 chr9 27916874 27916941 -89945686 - L2 LINE L2 -26 3246 3153 21 0 0 0 chr9 27918196 27918217 -89944410 + AT_rich Low_complexity Low_complexity 1 21 0 182 250 14 0 chr9 27919210 27919282 -89943345 + (TA)n Simple_repeat Simple_repeat 2 74 0 708 282 52 28 chr9 27920734 27920986 -89941641 - MIR SINE MIR -1 261 2 277 410 56 0 chr9 27921615 27921810 -89940817 + L3b LINE CR1 1104 1309 -274 356 351 53 55 chr9 27921856 27922272 -89940355 - L2 LINE L2 -54 3218 2804 425 258 10 21 chr9 27923851 27923948 -89938679 - L2 LINE L2 -1 3271 3176 739 250 48 6 chr9 27923976 27924144 -89938483 + MER5B DNA MER1_type 1 175 -3 960 200 9 0 chr9 27926186 27926401 -89936226 + L1MA6 LINE L1 6084 6300 0 21 0 0 0 chr9 27926700 27926721 -89935906 + AT_rich Low_complexity Low_complexity 1 21 0 631 299 6 0 chr9 27927286 27927463 -89935164 + LTR33 LTR ERVL 1 178 -343 22 0 0 0 chr9 27928019 27928041 -89934586 + AT_rich Low_complexity Low_complexity 1 22 0 2276 106 6 3 chr9 27929080 27929391 -89933236 + AluSx SINE Alu 1 312 0 11825 195 47 18 chr9 27931804 27936814 -89925813 + L1PA16 LINE L1 1761 6858 -11 1701 181 74 47 chr9 27937172 27937659 -89924968 + MLT1D LTR MaLR 6 505 0 1281 272 88 24 chr9 27938013 27938591 -89924036 + MLT1L LTR MaLR 1 615 0 720 254 144 27 chr9 27940379 27940868 -89921759 - MLT1H LTR MaLR -15 540 1 208 338 26 84 chr9 27941433 27941587 -89921040 + MIR SINE MIR 48 192 -70 2437 72 26 0 chr9 27942185 27942490 -89920137 + AluSp SINE Alu 1 313 0 29 70 0 0 chr9 27942516 27942573 -89920054 + AT_rich Low_complexity Low_complexity 1 57 0 1427 233 34 34 chr9 27943215 27943601 -89919026 - MLT1B LTR MaLR -4 386 1 253 409 35 16 chr9 27943689 27943946 -89918681 - L2 LINE L2 -446 2868 2607 197 342 6 95 chr9 27943996 27944154 -89918473 - MIR SINE MIR -99 163 20 199 256 0 0 chr9 27944412 27944455 -89918172 + MIR SINE MIR 109 151 -111 304 352 0 16 chr9 27945428 27945610 -89917017 + (CCA)n Simple_repeat Simple_repeat 1 179 0 271 237 62 62 chr9 27946530 27946627 -89916000 + LTR33 LTR ERVL 1 97 -424 437 260 79 45 chr9 27947972 27948149 -89914478 + MER5A DNA MER1_type 6 188 -1 240 271 195 27 chr9 27948343 27948500 -89914127 - MIR SINE MIR -64 198 23 328 151 35 35 chr9 27948888 27948974 -89913653 - L1MC5 LINE L1 -47 7914 7829 534 277 83 37 chr9 27949792 27950034 -89912593 - MIR SINE MIR -5 257 5 388 320 107 15 chr9 27950043 27950240 -89912387 + L1MC4a LINE L1 5695 5909 -1899 21 36 0 0 chr9 27950315 27950343 -89912284 + AT_rich Low_complexity Low_complexity 1 28 0 287 304 146 92 chr9 27950489 27950566 -89912061 + L2 LINE L2 3020 3091 -181 7712 58 2 60 chr9 27950566 27951595 -89911032 - LTR5 LTR ERVK 0 969 1 287 304 146 92 chr9 27951595 27951757 -89910870 + L2 LINE L2 3091 3272 0 566 316 101 3 chr9 27951897 27952138 -89910489 + MIR SINE MIR 2 261 -1 192 77 0 0 chr9 27952453 27952479 -89910148 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr9 27952595 27952624 -89910003 + AT_rich Low_complexity Low_complexity 1 29 0 1523 134 24 0 chr9 27952674 27952921 -89909706 - L1PA16 LINE L1 0 6166 5914 356 314 127 18 chr9 27952923 27953365 -89909262 + L1ME4a LINE L1 5618 6121 0 23 33 0 0 chr9 27953365 27953395 -89909232 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 27953951 27953972 -89908655 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr9 27953997 27954022 -89908605 + (TAAAAA)n Simple_repeat Simple_repeat 2 26 0 1696 183 52 48 chr9 27954288 27954748 -89907879 + MLT1C LTR MaLR 6 467 0 257 171 0 66 chr9 27954754 27954830 -89907797 + L1MC5 LINE L1 7754 7824 -137 284 230 50 29 chr9 27955021 27955160 -89907467 + HAL1b LINE L1 1204 1345 -3 2316 77 0 3 chr9 27955192 27955478 -89907149 + AluY SINE Alu 1 285 -26 337 279 54 36 chr9 27956327 27956370 -89906257 - L2 LINE L2 -2 3270 3229 2277 93 0 10 chr9 27956370 27956670 -89905957 + AluSc SINE Alu 10 306 -3 337 279 54 36 chr9 27956670 27956737 -89905890 - L2 LINE L2 -43 3229 3158 435 249 233 0 chr9 27957018 27957211 -89905416 - MIR SINE MIR -12 250 13 1001 199 197 9 chr9 27958981 27959497 -89903130 + LTR50 LTR ERVL 1 694 -101 571 217 178 11 chr9 27959600 27959780 -89902847 + MIR SINE MIR 47 256 -6 22 0 0 0 chr9 27960761 27960783 -89901844 + AT_rich Low_complexity Low_complexity 1 22 0 310 279 57 33 chr9 27961229 27961351 -89901276 - MIR SINE MIR -65 143 19 529 306 71 6 chr9 27961986 27962169 -89900458 - MIR SINE MIR -61 201 7 540 304 28 11 chr9 27962963 27963144 -89899483 - MIR SINE MIR -6 256 73 391 308 43 47 chr9 27963768 27963979 -89898648 - MLT1J2 LTR MaLR 0 450 241 249 143 54 36 chr9 27964043 27964099 -89898528 + MIR SINE MIR 148 204 -58 338 308 0 0 chr9 27964131 27964235 -89898392 - MIR SINE MIR -74 188 85 1334 250 40 42 chr9 27964241 27964532 -89898095 - MLT1D LTR MaLR -6 499 208 354 23 0 0 chr9 27964532 27964575 -89898052 + (TG)n Simple_repeat Simple_repeat 2 44 0 1334 250 40 42 chr9 27964575 27964779 -89897848 - MLT1D LTR MaLR -297 208 5 240 322 11 0 chr9 27964784 27964871 -89897756 - MIR SINE MIR -174 88 1 29285 111 18 59 chr9 27965031 27971440 -89891187 - L1PA7 LINE L1 -8 6146 16 13731 210 9 36 chr9 27971660 27972847 -89889780 + L1PA15 LINE L1 1679 2896 -3269 1770 160 4 7 chr9 27972847 27973146 -89889481 + AluJb SINE Alu 9 306 0 13731 210 9 36 chr9 27973146 27976084 -89886543 + L1PA15 LINE L1 2896 5689 -476 957 173 30 89 chr9 27976085 27976322 -89886305 + AluJb SINE Alu 81 303 -9 2846 160 6 8 chr9 27976322 27976809 -89885818 + L1PA15 LINE L1 5677 6162 -3 258 303 0 13 chr9 27977297 27977373 -89885254 + Zaphod DNA AcHobo 3954 4028 -3 282 338 86 0 chr9 27977922 27978061 -89884566 + MIR SINE MIR 106 256 -6 201 361 124 0 chr9 27980253 27980350 -89882277 + MIR SINE MIR 34 142 -66 1349 155 49 13 chr9 27980366 27980807 -89881820 - LTR54 LTR ERV1 -21 477 2 608 267 120 22 chr9 27980842 27981067 -89881560 - MIR SINE MIR -14 248 2 241 256 110 12 chr9 27981707 27981789 -89880838 - MIR SINE MIR -102 106 17 469 247 114 11 chr9 27982007 27982233 -89880394 - MIR SINE MIR -5 257 5 1637 127 43 56 chr9 27982402 27982515 -89880112 + MER44D DNA MER2_type 18 131 -2360 2124 124 0 17 chr9 27982515 27982813 -89879814 - AluSx SINE Alu -19 293 1 1637 127 43 56 chr9 27982813 27983023 -89879604 + MER44D DNA MER2_type 131 607 -2 2597 115 5 0 chr9 27983437 27983810 -89878817 + THE1C LTR MaLR 1 375 0 1908 217 82 27 chr9 27983926 27984451 -89878176 + MLT2B3 LTR ERVL 1 554 0 210 381 67 9 chr9 27984535 27984640 -89877987 - L2 LINE L2 -11 3302 3192 2615 162 12 14 chr9 27985515 27986002 -89876625 - L1MB2 LINE L1 -1 6170 5685 377 307 108 22 chr9 27986170 27986401 -89876226 - MIR SINE MIR 0 262 12 232 369 90 0 chr9 27986674 27986785 -89875842 + MIR3 SINE MIR 36 156 -52 204 322 0 0 chr9 27986840 27986899 -89875728 + MIR SINE MIR 85 143 -119 265 264 138 23 chr9 27987096 27987183 -89875444 - MER5A DNA MER1_type -2 187 91 2922 155 43 6 chr9 27987304 27987834 -89874793 + L1MB3 LINE L1 5625 6174 -9 2207 96 81 26 chr9 27988131 27988476 -89874151 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr9 27988815 27988843 -89873784 + AT_rich Low_complexity Low_complexity 1 28 0 2016 152 39 51 chr9 27989098 27989430 -89873197 - MSTB1 LTR MaLR -4 428 101 2240 143 125 0 chr9 27989430 27989830 -89872797 + LTR47A LTR ERVL 1 450 -2 2016 152 39 51 chr9 27989830 27989930 -89872697 - MSTB1 LTR MaLR -331 101 1 688 233 84 5 chr9 27990956 27991002 -89871625 + MER58A DNA MER1_type 6 47 -2373 257 0 30 0 chr9 27991002 27991035 -89871592 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 688 233 84 5 chr9 27991035 27991190 -89871437 + MER58A DNA MER1_type 47 223 -1 933 208 52 119 chr9 27991448 27991833 -89870794 - MLT1A1 LTR MaLR -2 363 5 1220 254 92 30 chr9 27991913 27992084 -89870543 - LTR16B LTR ERVL 0 464 305 1695 184 43 0 chr9 27992084 27992246 -89870381 - AluJb SINE Alu -18 294 113 207 0 0 0 chr9 27992246 27992269 -89870358 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1695 184 43 0 chr9 27992269 27992388 -89870239 - AluJb SINE Alu -199 113 1 1220 254 92 30 chr9 27992388 27992653 -89869974 - LTR16B LTR ERVL -159 305 1 216 263 35 0 chr9 27992770 27992827 -89869800 - MIR3 SINE MIR -25 183 125 220 340 206 25 chr9 27993558 27993917 -89868710 - L2 LINE L2 -965 2349 1926 213 180 0 0 chr9 27995035 27995085 -89867542 + CT-rich Low_complexity Low_complexity 1 50 0 1520 207 98 15 chr9 27996083 27996493 -89866134 + MLT1D LTR MaLR 62 505 0 338 296 59 62 chr9 27996735 27996936 -89865691 - MIR SINE MIR -36 226 30 384 155 0 0 chr9 27997404 27997475 -89865152 + GA-rich Low_complexity Low_complexity 1 71 0 205 191 24 0 chr9 27998307 27998349 -89864278 + (ATG)n Simple_repeat Simple_repeat 2 44 0 697 255 6 12 chr9 27998399 27998560 -89864067 - MIR SINE MIR -73 189 30 187 193 313 12 chr9 27998601 27998684 -89863943 - MIR SINE MIR -76 186 79 215 344 0 0 chr9 27998937 27999001 -89863626 + L2 LINE L2 3136 3199 -73 2569 128 7 17 chr9 27999001 27999423 -89863204 + MSTA LTR MaLR 11 428 0 260 328 15 0 chr9 27999423 27999490 -89863137 + L2 LINE L2 3237 3304 -9 256 288 29 22 chr9 28000121 28000260 -89862367 + L1ME4a LINE L1 5308 5447 -2361 442 91 0 15 chr9 28000277 28000343 -89862284 + AluSc SINE Alu 233 297 -12 1084 219 48 4 chr9 28000344 28000613 -89862014 - L1ME1 LINE L1 -5 6161 5881 736 238 115 43 chr9 28000617 28001059 -89861568 + L1ME4a LINE L1 5446 5919 -202 228 206 0 0 chr9 28001129 28001192 -89861435 + L1ME4a LINE L1 6056 6118 -3 1581 152 80 4 chr9 28001219 28001495 -89861132 - AluJo SINE Alu -15 297 1 186 287 156 16 chr9 28001595 28001717 -89860910 - L2 LINE L2 -19 3294 3156 286 263 203 8 chr9 28001759 28001892 -89860735 + MIR SINE MIR 98 256 -6 183 94 62 0 chr9 28003232 28003264 -89859363 - L3 LINE CR1 -155 1422 1389 2156 106 0 52 chr9 28004113 28004442 -89858185 - AluSx SINE Alu 0 312 1 574 328 65 34 chr9 28005293 28005705 -89856922 - MLT1K LTR MaLR -25 563 139 240 240 20 0 chr9 28005680 28005730 -89856897 - MLT1K LTR MaLR -355 233 183 * 7546 106 26 18 chr9 28005783 28005873 -89856754 - HSMAR2 DNA Mariner -94 1208 1120 2211 135 0 19 chr9 28005873 28006191 -89856436 - AluSx SINE Alu 0 312 1 7546 106 26 18 chr9 28006191 28007298 -89855329 - HSMAR2 DNA Mariner -182 1120 1 1486 163 25 4 chr9 28007546 28007822 -89854805 + L1MB3 LINE L1 5892 6173 -10 474 309 108 10 chr9 28009049 28009253 -89853374 - MIR SINE MIR -7 255 32 299 231 253 0 chr9 28009589 28009680 -89852947 + MIR SINE MIR 44 157 -105 565 220 51 19 chr9 28009694 28009908 -89852719 - L1ME LINE L1 -680 5482 5262 2055 139 3 3 chr9 28009909 28010218 -89852409 + AluSg SINE Alu 1 309 -1 2624 216 6 40 chr9 28010232 28010932 -89851695 + L1ME1 LINE L1 5486 6161 -5 1604 190 28 21 chr9 28011117 28011406 -89851221 + AluJo SINE Alu 1 291 -21 270 169 34 17 chr9 28011505 28011564 -89851063 + LTR67 LTR ERVL 478 537 -20 396 307 109 50 chr9 28011696 28011880 -89850747 - MIR SINE MIR -5 257 54 1973 102 84 3 chr9 28011880 28012164 -89850463 + AluSg SINE Alu 1 307 -3 396 307 109 50 chr9 28012164 28012217 -89850410 - MIR SINE MIR -208 54 6 7402 37 0 3 chr9 28013136 28014448 -89848179 + L1PA5 LINE L1 4840 6148 -6 2391 180 11 17 chr9 28014497 28014959 -89847668 + MER44D DNA MER2_type 7 520 -85 6342 88 11 1 chr9 28014966 28016268 -89846359 + L1PA14 LINE L1 4833 6159 -2 2106 107 0 7 chr9 28016591 28016933 -89845694 - AluSc SINE Alu 0 340 1 393 298 153 37 chr9 28017156 28017508 -89845119 - L2 LINE L2 0 3313 2921 297 75 0 0 chr9 28018947 28018987 -89843640 + (CA)n Simple_repeat Simple_repeat 2 41 0 226 328 107 16 chr9 28019336 28019458 -89843169 + MIR3 SINE MIR 67 199 -9 2208 112 0 3 chr9 28019607 28019901 -89842726 - AluSg SINE Alu -17 293 1 2316 118 82 43 chr9 28021950 28022366 -89840261 + MSTB1 LTR MaLR 1 432 0 412 258 41 53 chr9 28022368 28022612 -89840015 + L1MC5 LINE L1 7336 7576 -385 232 300 82 29 chr9 28022701 28022944 -89839683 + L1MC5 LINE L1 7701 7956 -5 2378 104 0 9 chr9 28023050 28023366 -89839261 + AluSq SINE Alu 1 313 0 199 277 0 0 chr9 28023902 28023949 -89838678 + MIR SINE MIR 216 262 0 371 285 70 65 chr9 28024390 28024590 -89838037 - MIR3 SINE MIR -5 203 3 217 191 21 21 chr9 28024781 28024828 -89837799 - L2 LINE L2 -3 3310 3264 1921 161 43 0 chr9 28024938 28025237 -89837390 + AluJb SINE Alu 1 312 0 224 109 0 43 chr9 28026292 28026338 -89836289 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2248 84 7 23 chr9 28026544 28026852 -89835775 - AluSp SINE Alu -6 307 5 319 320 112 34 chr9 28027688 28027894 -89834733 - L1 LINE L1 -2238 3908 3687 2120 231 49 38 chr9 28028653 28029078 -89833549 + L1ME3 LINE L1 5455 5893 -269 5935 103 15 5 chr9 28029078 28029904 -89832723 + L1PA14 LINE L1 4339 5155 -1006 2105 104 34 10 chr9 28029904 28030201 -89832426 + AluSx SINE Alu 1 304 -8 5935 103 15 5 chr9 28030201 28031182 -89831445 + L1PA14 LINE L1 5155 6149 -12 2120 231 49 38 chr9 28031182 28031450 -89831177 + L1ME3 LINE L1 5893 6156 -6 2757 132 27 8 chr9 28031745 28032230 -89830397 - L1MA5 LINE L1 0 6300 5807 2165 80 31 0 chr9 28032432 28032718 -89829909 - AluY SINE Alu -5 306 12 185 284 75 0 chr9 28032721 28032788 -89829839 - MIR SINE MIR -114 148 77 234 0 0 0 chr9 28032947 28032973 -89829654 + (T)n Simple_repeat Simple_repeat 1 26 0 877 104 30 0 chr9 28034366 28034501 -89828126 - L1PA13 LINE L1 -5 6158 6020 1103 211 35 107 chr9 28034581 28034749 -89827878 + MLT1B LTR MaLR 6 185 -205 2313 99 7 0 chr9 28034749 28035042 -89827585 + AluSc SINE Alu 1 295 -14 1103 211 35 107 chr9 28035042 28035276 -89827351 + MLT1B LTR MaLR 185 379 -11 1168 153 0 0 chr9 28037604 28037781 -89824846 - AluSg/x SINE Alu -3 309 133 21 0 0 0 chr9 28038010 28038031 -89824596 + AT_rich Low_complexity Low_complexity 1 21 0 2116 219 59 49 chr9 28038106 28038767 -89823860 + L1ME2 LINE L1 5009 5701 -463 2157 96 11 4 chr9 28038767 28039075 -89823552 + AluSx SINE Alu 1 310 0 2116 219 59 49 chr9 28039075 28039479 -89823148 + L1ME2 LINE L1 5701 6100 -64 1771 177 7 3 chr9 28039483 28039783 -89822844 + AluJo SINE Alu 4 304 -8 225 235 45 45 chr9 28039863 28039995 -89822632 + L1MC4 LINE L1 7836 7967 -75 26 0 0 0 chr9 28040067 28040093 -89822534 + AT_rich Low_complexity Low_complexity 1 26 0 249 257 62 88 chr9 28040237 28040350 -89822277 + L2 LINE L2 3158 3267 -5 1353 161 107 76 chr9 28040372 28040663 -89821964 - AluJo SINE Alu -12 300 1 43 20 0 0 chr9 28040906 28040956 -89821671 + AT_rich Low_complexity Low_complexity 1 50 0 261 288 38 25 chr9 28040972 28041052 -89821575 - MER5B DNA MER1_type -8 170 90 223 347 0 27 chr9 28040986 28041061 -89821566 + MER5A DNA MER1_type 35 107 -82 * 399 266 227 30 chr9 28041634 28041837 -89820790 + MIR SINE MIR 20 262 0 2418 51 51 0 chr9 28041893 28042189 -89820438 + AluY SINE Alu 1 311 0 2051 155 79 25 chr9 28042821 28043227 -89819400 - MSTA LTR MaLR 0 428 1 25 31 0 0 chr9 28044291 28044323 -89818304 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 28044488 28044509 -89818118 + AT_rich Low_complexity Low_complexity 1 21 0 1245 279 116 26 chr9 28045101 28045645 -89816982 + MLT1E LTR MaLR 1 593 0 273 236 150 14 chr9 28046167 28046307 -89816320 - L1ME3A LINE L1 -3 6167 6009 1344 271 81 2 chr9 28046313 28046781 -89815846 - L1ME3A LINE L1 -278 5892 5388 207 103 0 26 chr9 28046867 28046906 -89815721 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 254 305 59 17 chr9 28046915 28047033 -89815594 + L1ME3A LINE L1 6026 6148 -22 4048 143 32 16 chr9 28047046 28048304 -89814323 + L1PA16 LINE L1 4698 5963 -203 2177 111 44 0 chr9 28048317 28048615 -89814012 + AluSx SINE Alu 2 312 0 1171 274 44 85 chr9 28048616 28049486 -89813141 + L1ME LINE L1 2 835 -5235 1734 197 0 7 chr9 28049496 28049780 -89812847 + AluJo SINE Alu 1 282 -30 326 128 60 0 chr9 28049819 28049936 -89812691 + (TA)n Simple_repeat Simple_repeat 1 124 0 536 257 60 32 chr9 28049973 28050222 -89812405 + L1ME LINE L1 837 1092 -4988 612 221 41 0 chr9 28050260 28050432 -89812195 + L1ME LINE L1 1198 1376 -4704 1415 225 75 44 chr9 28050455 28050873 -89811754 + L1MEc LINE L1 1007 1449 -5376 2363 91 0 0 chr9 28050873 28051169 -89811458 + AluSq SINE Alu 1 296 -17 1415 225 75 44 chr9 28051169 28051320 -89811307 + L1MEc LINE L1 1449 1594 -5231 225 161 48 24 chr9 28051354 28051478 -89811149 + (TA)n Simple_repeat Simple_repeat 1 127 0 344 232 77 23 chr9 28051509 28051658 -89810969 + L1MEc LINE L1 1517 1766 -4878 2839 180 76 5 chr9 28051792 28052447 -89810180 + L1MB7 LINE L1 5472 6173 -11 273 209 57 38 chr9 28052556 28052661 -89809966 + L1MEc LINE L1 2646 2752 -3892 1437 119 13 0 chr9 28052661 28052896 -89809731 - Tigger5 DNA MER2_type 0 2323 2086 231 211 70 0 chr9 28052918 28052975 -89809652 - Tigger5 DNA MER2_type -2261 62 2 305 222 42 0 chr9 28052975 28053047 -89809580 + L1MEc LINE L1 2748 2822 -3822 1318 221 38 0 chr9 28053096 28053359 -89809268 + AluSx SINE Alu 1 273 -39 184 29 29 29 chr9 28053368 28053402 -89809225 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1782 143 4 4 chr9 28053402 28053675 -89808952 + AluSq SINE Alu 1 273 -40 568 238 54 0 chr9 28053675 28053822 -89808805 + MLT1E1 LTR MaLR 491 645 -9 1091 186 21 86 chr9 28053831 28053956 -89808671 + L1MEc LINE L1 3055 3187 -3457 2458 70 0 0 chr9 28053956 28054256 -89808371 - AluY SINE Alu -11 300 1 1091 186 21 86 chr9 28054256 28054472 -89808155 + L1MEc LINE L1 3187 3372 -3272 2334 71 0 0 chr9 28054472 28054916 -89807711 + AluY SINE Alu 1 444 0 1091 186 21 86 chr9 28054916 28054958 -89807669 + L1MEc LINE L1 3372 3415 -3229 2106 132 0 0 chr9 28055252 28055547 -89807080 - AluSx SINE Alu -17 295 1 2555 52 0 3 chr9 28055926 28056231 -89806396 - AluY SINE Alu -7 304 1 1012 152 0 0 chr9 28057214 28057365 -89805262 - AluJb SINE Alu -15 297 147 2243 121 0 3 chr9 28057801 28058115 -89804512 + AluSp SINE Alu 1 313 0 1866 72 0 4 chr9 28058403 28058638 -89803989 - AluY SINE Alu -77 234 1 1471 163 83 18 chr9 28058697 28058915 -89803712 + AluJo SINE Alu 1 242 -70 2254 199 118 73 chr9 28058915 28059706 -89802921 - LTR1B LTR ERV1 0 826 1 1471 163 83 18 chr9 28059706 28059763 -89802864 + AluJo SINE Alu 242 294 -18 21 36 0 0 chr9 28059956 28059984 -89802643 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 28060188 28060210 -89802417 + AT_rich Low_complexity Low_complexity 1 22 0 1833 123 9 56 chr9 28060493 28060552 -89802075 - MER47A DNA MER2_type -1984 339 279 2424 78 0 19 chr9 28060552 28060861 -89801766 - AluSq SINE Alu -10 303 1 1833 123 9 56 chr9 28060861 28061143 -89801484 - MER47A DNA MER2_type -2044 279 14 26 0 0 0 chr9 28061178 28061204 -89801423 + AT_rich Low_complexity Low_complexity 1 26 0 19440 83 1 6 chr9 28061432 28064173 -89798454 + HERV9 LTR ERV1 2217 4944 -3455 2060 176 116 66 chr9 28064174 28065013 -89797614 + HERV9 LTR ERV1 840 1720 -5176 * 3215 79 3 16 chr9 28065007 28065592 -89797035 + HERV9 LTR ERV1 7756 8399 0 5530 77 98 1 chr9 28065592 28066345 -89796282 + LTR12 LTR ERV1 1 826 0 369 349 64 43 chr9 28066824 28067151 -89795476 + HAL1b LINE L1 18 351 -997 315 288 107 23 chr9 28067351 28067528 -89795099 + HAL1 LINE L1 6 197 -2310 2516 179 95 81 chr9 28067569 28068250 -89794377 - LTR8 LTR ERV1 0 691 1 293 253 20 20 chr9 28068394 28068493 -89794134 + HAL1 LINE L1 468 566 -1941 485 222 105 77 chr9 28068535 28068620 -89794007 + HAL1 LINE L1 760 841 -1666 1761 167 3 16 chr9 28068620 28068932 -89793695 + AluJb SINE Alu 1 308 -4 485 222 105 77 chr9 28068932 28069094 -89793533 + HAL1 LINE L1 841 1014 -1493 1318 238 38 108 chr9 28069097 28069699 -89792928 - REP3 LTR ERV -2 560 1 509 230 97 50 chr9 28069714 28070014 -89792613 + HAL1 LINE L1 1026 1339 -1168 377 260 65 8 chr9 28070123 28070246 -89792381 + HAL1 LINE L1 1363 1492 -1015 * 1109 15 0 0 chr9 28070241 28070371 -89792256 + L1P LINE L1 2791 2920 -3226 3791 60 12 6 chr9 28070472 28070984 -89791643 + L1PA5 LINE L1 4814 5329 -812 3572 39 0 2 chr9 28070984 28071418 -89791209 + L1PA5 LINE L1 5721 6154 0 1350 233 142 87 chr9 28071419 28072259 -89790368 + HAL1 LINE L1 1485 2370 -137 242 292 292 14 chr9 28072520 28072664 -89789963 - MIR3 SINE MIR -6 202 19 786 156 0 15 chr9 28073340 28073475 -89789152 + FLAM_A SINE Alu 1 133 0 2195 75 14 14 chr9 28073706 28074000 -89788627 - AluY SINE Alu -17 294 1 823 10 0 20 chr9 28077133 28077233 -89785394 - L1PA3 LINE L1 -2 6153 6056 2328 98 3 0 chr9 28077882 28078179 -89784448 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr9 28078288 28078316 -89784311 + AT_rich Low_complexity Low_complexity 1 28 0 396 201 58 71 chr9 28078403 28078557 -89784070 - L1MC5 LINE L1 -608 7353 7202 237 244 70 0 chr9 28078607 28078693 -89783934 - HAL1 LINE L1 -1028 1479 1388 665 215 226 26 chr9 28078809 28079074 -89783553 + L2 LINE L2 2988 3305 -8 579 301 90 47 chr9 28079076 28079215 -89783412 - HAL1 LINE L1 -1276 1231 1100 2100 98 0 0 chr9 28079215 28079480 -89783147 - AluSg SINE Alu -45 265 1 579 301 90 47 chr9 28079480 28079705 -89782922 - HAL1 LINE L1 -1407 1100 851 2383 91 0 0 chr9 28079943 28080252 -89782375 + AluSg1 SINE Alu 1 309 0 2391 90 3 0 chr9 28080492 28080793 -89781834 - AluSp SINE Alu -11 302 1 21 71 0 0 chr9 28080837 28080879 -89781748 + AT_rich Low_complexity Low_complexity 1 42 0 2704 39 0 0 chr9 28081009 28081320 -89781307 - AluY SINE Alu 0 311 1 280 233 8 54 chr9 28081325 28081454 -89781173 - L1MC/D LINE L1 -2603 5439 5317 329 267 0 0 chr9 28081689 28081764 -89780863 - HAL1 LINE L1 -2422 85 11 2219 88 3 10 chr9 28082039 28082336 -89780291 + AluY SINE Alu 1 295 -16 2327 75 7 0 chr9 28083648 28083942 -89778685 - AluY SINE Alu -15 296 1 35 41 0 0 chr9 28085827 28085876 -89776751 + AT_rich Low_complexity Low_complexity 1 49 0 515 220 0 8 chr9 28085876 28085994 -89776633 - AluJb SINE Alu -22 290 174 2145 103 3 3 chr9 28086133 28086424 -89776203 + AluSx SINE Alu 14 304 -8 249 328 138 9 chr9 28086656 28086772 -89775855 + L3 LINE CR1 199 329 -1248 624 229 170 31 chr9 28086784 28087142 -89775485 - L2 LINE L2 -280 3033 2632 457 225 183 100 chr9 28087146 28087597 -89775030 - L2 LINE L2 -831 2483 1920 422 311 139 0 chr9 28087600 28087780 -89774847 - L2 LINE L2 -1648 1666 1462 416 297 34 14 chr9 28087906 28088054 -89774573 + L3 LINE CR1 1250 1400 -177 1057 222 29 25 chr9 28088123 28088366 -89774261 - MIR SINE MIR -18 244 1 4187 153 101 7 chr9 28088550 28089460 -89773167 + L1MC2 LINE L1 5188 6181 -163 532 93 23 12 chr9 28089474 28089560 -89773067 + L1MC2 LINE L1 6248 6334 -10 428 215 16 58 chr9 28089948 28090069 -89772558 - AluJb SINE Alu -68 244 129 479 322 159 21 chr9 28090479 28090768 -89771859 - L3 LINE CR1 -7 1570 1242 2020 142 30 0 chr9 28091317 28091620 -89771007 + AluSx SINE Alu 1 312 0 2455 78 0 3 chr9 28092508 28092816 -89769811 + AluY SINE Alu 1 307 -4 1188 102 12 0 chr9 28092816 28092983 -89769644 + AluY SINE Alu 133 301 -10 23 0 0 0 chr9 28093610 28093633 -89768994 + AT_rich Low_complexity Low_complexity 1 23 0 2240 75 4 0 chr9 28094477 28094778 -89767849 + AluY SINE Alu 1 302 0 1179 268 93 34 chr9 28096409 28097033 -89765594 + L1MC4 LINE L1 7377 8037 -5 198 0 0 0 chr9 28097738 28097760 -89764867 + (A)n Simple_repeat Simple_repeat 1 22 0 1294 189 125 11 chr9 28097765 28098029 -89764598 - AluJb SINE Alu -18 294 1 2203 98 7 3 chr9 28098899 28099195 -89763432 + AluSp SINE Alu 1 297 -16 537 194 86 29 chr9 28099329 28099468 -89763159 - MIR SINE MIR -10 252 106 2187 127 0 0 chr9 28099498 28099797 -89762830 - AluSx SINE Alu -7 305 7 290 191 88 0 chr9 28099972 28100040 -89762587 + L1MC4a LINE L1 5885 5958 -1850 1106 230 101 83 chr9 28100389 28100555 -89762072 - MLT1D LTR MaLR 0 505 343 1925 153 52 18 chr9 28100555 28100881 -89761746 + MER1B DNA MER1_type 1 337 0 1106 230 101 83 chr9 28100881 28101210 -89761417 - MLT1D LTR MaLR -162 343 1 1013 189 111 45 chr9 28101259 28101592 -89761035 + Charlie4a DNA MER1_type 148 502 -6 2296 187 47 18 chr9 28101792 28102283 -89760344 + MLT1D LTR MaLR 1 505 0 462 238 54 82 chr9 28102304 28102657 -89759970 + L1MC5 LINE L1 7339 7681 -280 25 31 0 0 chr9 28102669 28102701 -89759926 + AT_rich Low_complexity Low_complexity 1 32 0 344 208 40 32 chr9 28102730 28102855 -89759772 + L1MC5 LINE L1 7806 7931 -30 180 0 0 0 chr9 28103696 28103716 -89758911 + (T)n Simple_repeat Simple_repeat 1 20 0 213 154 0 0 chr9 28104198 28104237 -89758390 + (CA)n Simple_repeat Simple_repeat 2 40 0 216 0 0 0 chr9 28104244 28104268 -89758359 + (TG)n Simple_repeat Simple_repeat 2 25 0 2038 128 0 10 chr9 28104277 28104573 -89758054 - AluSx SINE Alu -19 293 1 2004 141 3 0 chr9 28104954 28105251 -89757376 + AluSx SINE Alu 3 300 -12 1933 121 36 0 chr9 28105300 28105610 -89757017 + AluSx SINE Alu 3 312 0 221 57 29 0 chr9 28106196 28106231 -89756396 + (TA)n Simple_repeat Simple_repeat 2 37 0 747 211 0 0 chr9 28106233 28106375 -89756252 - FRAM SINE Alu -31 145 4 1357 186 74 0 chr9 28106640 28106909 -89755718 + AluJb SINE Alu 5 293 -19 2492 78 0 0 chr9 28107585 28107891 -89754736 + AluY SINE Alu 3 308 -3 1727 162 17 17 chr9 28107891 28108250 -89754377 - L1MA4 LINE L1 -3 6297 5939 1764 142 0 4 chr9 28108794 28109047 -89753580 + AluSx SINE Alu 35 286 -26 281 91 0 0 chr9 28109048 28109092 -89753535 + Alu SINE Alu 257 300 -2 764 132 9 0 chr9 28109494 28109608 -89753019 + Tigger3(Golem) DNA MER2_type 2808 2922 -107 1803 117 51 48 chr9 28109615 28109757 -89752870 + MER46B DNA MER2_type 10 30 -2701 1689 161 39 0 chr9 28109757 28110036 -89752591 + AluJo SINE Alu 1 290 -22 1803 117 51 48 chr9 28110036 28110244 -89752383 + MER46B DNA MER2_type 30 236 0 526 224 37 0 chr9 28110244 28110348 -89752279 + Tigger3(Golem) DNA MER2_type 2921 3028 -1 29 0 0 0 chr9 28110769 28110798 -89751829 + AT_rich Low_complexity Low_complexity 1 29 0 767 225 6 0 chr9 28111553 28111713 -89750914 + AluJb SINE Alu 134 294 -18 1985 218 62 46 chr9 28112373 28112918 -89749709 + MLT2B3 LTR ERVL 1 554 0 1945 160 13 0 chr9 28113562 28113862 -89748765 - AluSx SINE Alu -8 304 1 421 228 0 0 chr9 28113949 28114028 -89748599 + AluJo/FLAM SINE Alu 37 115 -197 * 768 190 22 0 chr9 28114021 28114158 -89748469 - AluJo SINE Alu -170 142 3 1957 150 45 31 chr9 28114213 28114572 -89748055 + THE1B LTR MaLR 1 364 0 10685 92 54 10 chr9 28114572 28116085 -89746542 + THE1B-int LTR MaLR 1 1580 0 1029 137 52 10 chr9 28116085 28116395 -89746232 + THE1B LTR MaLR 1 364 0 2273 73 3 7 chr9 28117961 28118261 -89744366 - AluSg SINE Alu -11 299 1 203 286 0 14 chr9 28118283 28118353 -89744274 + (TA)n Simple_repeat Simple_repeat 2 70 0 22 35 0 0 chr9 28119485 28119514 -89743113 + AT_rich Low_complexity Low_complexity 1 29 0 2270 94 7 0 chr9 28119820 28120117 -89742510 + AluSg SINE Alu 2 300 -10 499 359 65 8 chr9 28120902 28121150 -89741477 + L2 LINE L2 2511 2772 -542 213 292 62 0 chr9 28121340 28121405 -89741222 + L2 LINE L2 3006 3074 -198 1647 151 185 116 chr9 28121509 28122021 -89740606 + L1MB8 LINE L1 5508 6072 -106 2289 88 3 3 chr9 28122021 28122329 -89740298 + AluSq SINE Alu 1 308 -5 1647 151 185 116 chr9 28122329 28122438 -89740189 + L1MB8 LINE L1 6072 6172 -6 2221 85 0 44 chr9 28122458 28122775 -89739852 + AluY SINE Alu 1 303 -8 2155 130 0 3 chr9 28122973 28123280 -89739347 + AluSx SINE Alu 1 306 -6 577 296 190 25 chr9 28123305 28123549 -89739078 + L1MC/D LINE L1 3424 3626 -2520 2517 53 0 0 chr9 28123549 28123852 -89738775 + AluY SINE Alu 1 303 -8 577 296 190 25 chr9 28123852 28124050 -89738577 + L1MC/D LINE L1 3626 3939 -2207 365 263 82 63 chr9 28124073 28124389 -89738238 + L1MC/D LINE L1 5315 5636 -2172 434 301 56 7 chr9 28124789 28124938 -89737689 + MIR SINE MIR 2 154 -60 24 0 0 0 chr9 28125055 28125079 -89737548 + AT_rich Low_complexity Low_complexity 1 24 0 319 323 101 45 chr9 28125183 28125561 -89737066 + L1M2 LINE L1 345 743 -6106 2483 74 3 0 chr9 28126709 28127019 -89735608 - AluSp SINE Alu -2 311 1 1276 241 29 21 chr9 28127102 28127198 -89735429 + LTR26 LTR ERV1 181 275 -328 3677 139 81 0 chr9 28127198 28127794 -89734833 + LTR9B LTR ERV1 1 644 0 1276 241 29 21 chr9 28127794 28128117 -89734510 + LTR26 LTR ERV1 275 603 0 815 112 77 7 chr9 28128120 28128263 -89734364 + MLT1B LTR MaLR 22 174 -216 2356 68 14 14 chr9 28128267 28128563 -89734064 + AluY SINE Alu 1 296 -15 1218 205 9 0 chr9 28128563 28128787 -89733840 + 7SLRNA srpRNA srpRNA 1 226 -94 764 101 0 2 chr9 28128788 28129036 -89733591 + AluSx SINE Alu 1 296 -13 516 202 0 0 chr9 28129036 28129130 -89733497 + 7SLRNA srpRNA srpRNA 217 310 -10 1162 152 25 0 chr9 28129151 28129349 -89733278 + MLT1B LTR MaLR 188 390 0 314 248 29 19 chr9 28129594 28129699 -89732928 - L2 LINE L2 -44 3269 3164 319 238 169 44 chr9 28129737 28129842 -89732785 + L2 LINE L2 3096 3229 -84 2308 108 3 0 chr9 28129842 28130149 -89732478 - AluSg SINE Alu -2 308 1 319 238 169 44 chr9 28130149 28130203 -89732424 + L2 LINE L2 3229 3275 -38 1438 155 52 48 chr9 28130203 28130474 -89732153 + AluJb SINE Alu 1 272 -40 258 146 18 18 chr9 28130739 28130794 -89731833 - MER116 DNA Mariner 0 80 26 237 167 0 0 chr9 28130823 28130865 -89731762 - MER116 DNA Mariner -38 42 1 1819 109 91 0 chr9 28131331 28131606 -89731021 - AluSx SINE Alu -8 304 5 246 111 67 0 chr9 28131615 28131660 -89730967 + MLT1K LTR MaLR 541 588 0 227 200 0 22 chr9 28131661 28131706 -89730921 + (CATAG)n Simple_repeat Simple_repeat 1 44 0 253 330 127 0 chr9 28131941 28132059 -89730568 + L2 LINE L2 3172 3304 -9 392 255 87 19 chr9 28132112 28132273 -89730354 + MLT1H LTR MaLR 1 172 -377 355 277 207 28 chr9 28132991 28133204 -89729423 - MIR SINE MIR -10 252 2 226 211 28 14 chr9 28133408 28133479 -89729148 - L1 LINE L1 -1197 4949 4878 1635 214 180 20 chr9 28134015 28134525 -89728102 + MLT1E LTR MaLR 1 592 -1 265 252 171 37 chr9 28134725 28134971 -89727656 + L1MC4 LINE L1 7689 7967 -75 1900 166 3 19 chr9 28134999 28135313 -89727314 - AluJo SINE Alu -3 309 1 23 54 0 0 chr9 28135313 28135350 -89727277 + AT_rich Low_complexity Low_complexity 1 37 0 1477 40 0 0 chr9 28135581 28135757 -89726870 + AluY SINE Alu 123 298 -13 227 254 0 0 chr9 28136394 28136449 -89726178 + L1ME4a LINE L1 5990 6044 -77 181 227 0 106 chr9 28136808 28136874 -89725753 + MIR SINE MIR 21 79 -129 55 40 0 0 chr9 28137875 28137951 -89724676 + AT_rich Low_complexity Low_complexity 1 76 0 3143 35 0 0 chr9 28138961 28139355 -89723272 - L1P LINE L1 -1255 4891 4498 322 267 55 36 chr9 28139697 28139862 -89722765 + L1ME LINE L1 5673 5840 -281 23 33 0 0 chr9 28140283 28140313 -89722314 + AT_rich Low_complexity Low_complexity 1 30 0 200 194 0 0 chr9 28140317 28140353 -89722274 - MIR SINE MIR -8 254 219 2931 159 36 82 chr9 28140381 28141110 -89721517 - L1PB4 LINE L1 -7 6149 5455 2365 108 7 0 chr9 28141431 28141738 -89720889 - AluSq SINE Alu -4 309 1 368 258 129 83 chr9 28141799 28142148 -89720479 + L1MC5 LINE L1 7263 7634 -408 2246 62 36 36 chr9 28142271 28142579 -89720048 + AluY SINE Alu 3 310 -1 2252 105 3 0 chr9 28143172 28143476 -89719151 - AluY SINE Alu -6 305 1 1972 112 3 37 chr9 28143488 28143784 -89718843 - AluSx SINE Alu -26 286 1 23 0 0 0 chr9 28143993 28144016 -89718611 + AT_rich Low_complexity Low_complexity 1 23 0 2364 90 0 10 chr9 28144624 28144934 -89717693 - AluSx SINE Alu -5 307 1 29 47 0 0 chr9 28145598 28145641 -89716986 + AT_rich Low_complexity Low_complexity 1 43 0 743 168 168 7 chr9 28145687 28145836 -89716791 - AluJb SINE Alu -6 306 134 22 35 0 0 chr9 28145837 28145866 -89716761 + AT_rich Low_complexity Low_complexity 1 29 0 598 99 0 0 chr9 28146064 28146155 -89716472 - L1PA10 LINE L1 0 6168 6078 2295 106 0 0 chr9 28146169 28146461 -89716166 - AluSg SINE Alu -18 292 1 964 97 8 15 chr9 28146461 28146595 -89716032 - AluSq/x SINE Alu -177 136 4 355 305 122 18 chr9 28147275 28147562 -89715065 - L2 LINE L2 -357 2956 2577 555 282 47 41 chr9 28147718 28147888 -89714739 - MIR SINE MIR -89 173 3 670 204 0 15 chr9 28147955 28148087 -89714540 + FLAM_A SINE Alu 4 133 0 532 247 37 56 chr9 28148558 28148720 -89713907 + MER5B DNA MER1_type 1 159 -19 264 143 20 20 chr9 28149092 28149141 -89713486 + MIR SINE MIR 193 241 -21 206 233 14 27 chr9 28149567 28149640 -89712987 + A-rich Low_complexity Low_complexity 3 74 0 193 277 270 20 chr9 28149643 28149791 -89712836 - MIR SINE MIR -13 249 65 340 253 13 97 chr9 28149881 28149942 -89712685 + MER5B DNA MER1_type 1 66 -112 2252 105 3 0 chr9 28149942 28150237 -89712390 + AluSp SINE Alu 2 297 -16 340 253 13 97 chr9 28150237 28150329 -89712298 + MER5B DNA MER1_type 66 141 -37 286 315 0 45 chr9 28150321 28150432 -89712195 + MER5A DNA MER1_type 82 187 -2 * 209 327 45 9 chr9 28150543 28150653 -89711974 - MIR SINE MIR 0 262 149 590 275 19 6 chr9 28151698 28151858 -89710769 - MIR SINE MIR -99 163 2 981 289 45 48 chr9 28152876 28153485 -89709142 + L2 LINE L2 2395 3049 -264 354 230 18 62 chr9 28153562 28153675 -89708952 + MLT1J2 LTR MaLR 64 171 -279 3489 208 93 37 chr9 28153704 28154764 -89707863 - Charlie1a DNA MER1_type -335 1120 1 1160 155 6 0 chr9 28154887 28155061 -89707566 - AluJb SINE Alu -15 297 123 1794 175 0 13 chr9 28156342 28156651 -89705976 - AluJo SINE Alu -7 305 1 31 44 0 0 chr9 28159093 28159138 -89703489 + AT_rich Low_complexity Low_complexity 1 45 0 2035 149 0 7 chr9 28159330 28159639 -89702988 - AluSx SINE Alu -5 307 1 460 283 92 3 chr9 28160772 28160941 -89701686 + MIR SINE MIR 8 189 -19 1811 174 0 13 chr9 28161133 28161443 -89701184 + AluJo SINE Alu 2 307 -5 1101 204 155 15 chr9 28161446 28161710 -89700917 + AluJb SINE Alu 2 302 0 321 256 12 12 chr9 28162096 28162182 -89700445 + MLT1I LTR MaLR 36 121 -288 2347 64 7 3 chr9 28162323 28162619 -89700008 - AluY SINE Alu -14 297 1 225 322 35 23 chr9 28162689 28162776 -89699851 + MLT1I LTR MaLR 243 330 -79 2102 136 0 3 chr9 28162798 28163099 -89699528 - AluSq SINE Alu -13 300 1 610 250 65 35 chr9 28163169 28163369 -89699258 + L1MC4a LINE L1 6704 6909 -899 613 225 48 43 chr9 28163394 28163625 -89699002 + L1MC5 LINE L1 6997 7228 -733 512 227 131 48 chr9 28163649 28163971 -89698656 + L1MC5 LINE L1 7226 7512 -449 674 130 0 0 chr9 28163976 28164076 -89698551 + AluS SINE Alu 1 100 -213 1655 97 4 13 chr9 28164076 28164338 -89698289 + AluSq SINE Alu 58 317 0 258 198 206 93 chr9 28164345 28164430 -89698197 + L1MC5 LINE L1 7546 7620 -341 216 0 0 0 chr9 28164430 28164454 -89698173 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 258 198 206 93 chr9 28164454 28164513 -89698114 + L1MC5 LINE L1 7620 7671 -290 1425 190 75 16 chr9 28164513 28164834 -89697793 + MER58B DNA MER1_type 2 341 0 258 198 206 93 chr9 28164834 28164935 -89697692 + L1MC5 LINE L1 7671 7820 -141 1867 105 6 71 chr9 28165069 28165203 -89697424 + AluSx SINE Alu 1 142 -170 2279 106 0 0 chr9 28165203 28165504 -89697123 + AluSc SINE Alu 1 301 -8 1867 105 6 71 chr9 28165504 28165694 -89696933 + AluSx SINE Alu 142 304 -8 25 0 0 0 chr9 28165694 28165719 -89696908 + AT_rich Low_complexity Low_complexity 1 25 0 2462 72 0 3 chr9 28165722 28166029 -89696598 + AluY SINE Alu 1 306 -5 1882 180 0 0 chr9 28166029 28166323 -89696304 - AluJo SINE Alu -17 295 2 2037 122 10 3 chr9 28166691 28166994 -89695633 - AluSx SINE Alu -7 305 1 747 110 63 0 chr9 28167905 28168032 -89694595 + MER30 DNA MER1_type 1 135 -95 35 24 0 0 chr9 28168062 28168104 -89694523 + AT_rich Low_complexity Low_complexity 1 42 0 439 250 146 39 chr9 28168342 28168602 -89694025 + HAL1 LINE L1 1 288 -2219 * 8082 143 23 21 chr9 28168601 28169074 -89693553 + L1MB3 LINE L1 18 489 -5895 2237 110 0 3 chr9 28169074 28169375 -89693252 + AluSq SINE Alu 1 300 -13 8082 143 23 21 chr9 28169375 28170443 -89692184 + L1MB3 LINE L1 489 1561 -4823 585 266 0 0 chr9 28170443 28170567 -89692060 + FAM SINE Alu 2 125 -60 1075 204 13 35 chr9 28170567 28170793 -89691834 + AluJo SINE Alu 85 305 -7 3313 164 85 32 chr9 28170796 28171322 -89691305 + L1MB3 LINE L1 1686 2183 -4199 2409 71 0 0 chr9 28171322 28171656 -89690971 + AluY SINE Alu 1 334 0 3313 164 85 32 chr9 28171656 28172275 -89690352 + L1MB3 LINE L1 2183 2900 -3482 3221 155 31 3 chr9 28172287 28172894 -89689733 + L1MB3 LINE L1 5795 6418 -1 189 74 0 0 chr9 28173367 28173394 -89689233 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 242 284 137 0 chr9 28173431 28173526 -89689101 + HAL1 LINE L1 404 511 -1996 847 234 254 29 chr9 28173625 28174141 -89688486 + HAL1 LINE L1 720 1351 -1156 700 306 94 25 chr9 28174257 28174702 -89687925 + HAL1 LINE L1 1620 2095 -412 2355 54 13 0 chr9 28174741 28175039 -89687588 + AluY SINE Alu 1 302 -9 256 192 115 0 chr9 28175064 28175142 -89687485 + HAL1 LINE L1 2219 2305 -202 1833 166 0 23 chr9 28175805 28176106 -89686521 + AluJo SINE Alu 1 294 -18 1955 173 59 11 chr9 28176123 28176498 -89686129 + MSTD LTR MaLR 4 396 0 1085 121 136 29 chr9 28176631 28176837 -89685790 + MER30 DNA MER1_type 3 230 0 2327 82 10 0 chr9 28176988 28177280 -89685347 + AluSp SINE Alu 1 295 -18 309 247 118 21 chr9 28177581 28177674 -89684953 - L3 LINE CR1 -6 1571 1470 * 444 341 40 0 chr9 28177654 28177830 -89684797 + L2 LINE L2 2578 2760 -554 225 235 190 114 chr9 28177899 28178188 -89684439 + L2 LINE L2 2943 3253 -60 249 250 313 21 chr9 28178719 28178863 -89683764 - MIR3 SINE MIR -9 199 14 249 192 39 0 chr9 28179990 28180042 -89682585 - MER5A DNA MER1_type -80 109 56 2331 79 16 0 chr9 28180599 28180903 -89681724 - AluSc SINE Alu 0 309 1 364 188 43 0 chr9 28181377 28181446 -89681181 - MIR SINE MIR -70 192 121 768 129 282 38 chr9 28181449 28181658 -89680969 + MER93b LTR ERV1 1 260 -113 994 194 114 38 chr9 28181720 28182148 -89680479 - LTR8A LTR ERV1 -24 627 143 2489 75 0 3 chr9 28182171 28182477 -89680150 + AluSc SINE Alu 1 305 -4 258 185 15 15 chr9 28182628 28182693 -89679934 - MER87 LTR ERV1 -395 146 82 342 179 64 13 chr9 28182734 28182812 -89679815 - LTR8 LTR ERV1 -607 84 3 508 168 75 0 chr9 28182816 28182923 -89679704 + MER93a LTR ERV1 288 402 0 181 379 0 0 chr9 28182985 28183043 -89679584 - MIR SINE MIR -100 108 51 1877 135 14 3 chr9 28183757 28184045 -89678582 + AluSx SINE Alu 1 291 -21 2364 84 3 13 chr9 28184409 28184717 -89677910 - AluSq SINE Alu -8 305 1 287 220 37 46 chr9 28184937 28185046 -89677581 - MER34 LTR ERV1 0 542 435 407 227 105 63 chr9 28185408 28185646 -89676981 - L1MC4a LINE L1 -1962 5846 5599 826 146 7 29 chr9 28185813 28185950 -89676677 - AluJo SINE Alu -178 134 1 823 198 77 0 chr9 28186103 28186285 -89676342 + MER67A LTR ERV1 348 543 0 1568 167 64 4 chr9 28186330 28186673 -89675954 + MER93a LTR ERV1 1 402 0 440 317 22 27 chr9 28186715 28186898 -89675729 - L2 LINE L2 -180 3092 2911 195 256 0 0 chr9 28187144 28187187 -89675440 + MIR SINE MIR 72 114 -148 536 204 15 15 chr9 28187231 28187363 -89675264 - LTR67 LTR ERVL -2 555 424 24 0 0 0 chr9 28187971 28187995 -89674632 + AT_rich Low_complexity Low_complexity 1 24 0 351 293 103 35 chr9 28189085 28189259 -89673368 - MIR SINE MIR -54 208 23 289 323 174 0 chr9 28189684 28189845 -89672782 - L2 LINE L2 -990 2324 2136 1724 51 174 16 chr9 28189940 28190193 -89672434 - AluY SINE Alu -8 293 1 2404 55 0 3 chr9 28191224 28191549 -89671078 - AluY SINE Alu 0 311 1 456 352 87 7 chr9 28192191 28192478 -89670149 + L2 LINE L2 1876 2185 -1129 559 262 52 56 chr9 28192483 28192735 -89669892 + MER112 DNA MER1_type 9 259 -1 522 357 101 47 chr9 28192813 28193224 -89669403 - L2 LINE L2 -2379 935 469 2174 98 0 23 chr9 28193224 28193530 -89669097 - AluY SINE Alu -12 299 1 522 357 101 47 chr9 28193530 28193824 -89668803 - L2 LINE L2 -2845 469 192 451 209 73 36 chr9 28194254 28194364 -89668263 + FRAM SINE Alu 38 151 -25 313 336 102 33 chr9 28194612 28195064 -89667563 + L1M4 LINE L1 4802 5284 -862 228 67 0 0 chr9 28195067 28195097 -89667530 + (T)n Simple_repeat Simple_repeat 1 30 0 7590 28 4 16 chr9 28195098 28196094 -89666533 - L1PA2 LINE L1 0 6155 5163 221 237 50 36 chr9 28196094 28196233 -89666394 + A-rich Low_complexity Low_complexity 5 145 0 248 228 0 22 chr9 28196246 28196338 -89666289 - L1PA2 LINE L1 -1130 5016 4927 9744 187 52 22 chr9 28196668 28198448 -89664179 - L1 LINE L1 -802 6046 4171 2340 99 0 0 chr9 28198448 28198742 -89663885 - AluSg SINE Alu -16 294 1 9744 187 52 22 chr9 28198742 28199450 -89663177 - L1 LINE L1 -2677 4171 3485 1476 229 40 69 chr9 28199445 28200359 -89662268 - L1 LINE L1 -3687 3161 2273 * 367 295 53 70 chr9 28200483 28200710 -89661917 - L1ME4a LINE L1 -111 6010 5788 24767 196 27 33 chr9 28200975 28206431 -89656196 - HERVI LTR ERV1 -2338 5447 26 1929 193 74 22 chr9 28206456 28206944 -89655683 - LTR10D LTR ERV1 0 513 1 330 295 70 19 chr9 28207175 28207331 -89655296 - L1ME4a LINE L1 -1 6120 5957 601 221 16 8 chr9 28207331 28207458 -89655169 - FLAM_A SINE Alu -2 131 4 688 225 0 0 chr9 28207501 28207630 -89654997 + FLAM_A SINE Alu 2 130 -3 2013 161 0 0 chr9 28207667 28207972 -89654655 - AluSx SINE Alu -7 305 1 291 213 27 0 chr9 28207987 28208062 -89654565 - L1ME4a LINE L1 -378 5786 5710 2392 102 0 6 chr9 28209884 28210198 -89652429 - AluSx SINE Alu 0 312 1 421 246 77 8 chr9 28210332 28210462 -89652165 - MER3 DNA MER1_type -70 139 1 1459 184 61 53 chr9 28211062 28211421 -89651206 - MLT1A1 LTR MaLR -3 362 1 1018 171 0 18 chr9 28211427 28211597 -89651030 - FRAM SINE Alu -9 167 1 2068 135 0 17 chr9 28211606 28211903 -89650724 - AluSx SINE Alu -20 292 1 2199 117 3 3 chr9 28211952 28212251 -89650376 - AluSx SINE Alu -13 299 1 1874 136 6 57 chr9 28212448 28212627 -89650000 - AluSq SINE Alu -12 301 143 2360 87 10 3 chr9 28212627 28212938 -89649689 - AluSp SINE Alu 0 313 1 1874 136 6 57 chr9 28212938 28213075 -89649552 - AluSq SINE Alu -170 143 1 835 206 62 34 chr9 28213569 28213778 -89648849 + MER20 DNA MER1_type 1 215 -4 2228 119 0 0 chr9 28213957 28214267 -89648360 - AluSx SINE Alu -2 310 1 5042 119 23 5 chr9 28214816 28215640 -89646987 + L1PA13 LINE L1 5321 6159 -4 34 0 0 0 chr9 28215666 28215700 -89646927 + AT_rich Low_complexity Low_complexity 1 34 0 3272 146 21 17 chr9 28215803 28216659 -89645968 + L1PB1 LINE L1 4928 5788 -363 237 139 0 0 chr9 28216671 28216714 -89645913 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 2399 117 5 3 chr9 28216714 28217082 -89645545 + L1PB1 LINE L1 5782 6150 -1 2384 84 0 0 chr9 28217086 28217395 -89645232 + AluY SINE Alu 1 309 -2 1192 147 0 11 chr9 28217699 28217883 -89644744 + AluSg/x SINE Alu 118 299 -13 1463 161 39 0 chr9 28217975 28218254 -89644373 + L1MB8 LINE L1 5544 5833 -345 180 77 0 0 chr9 28218458 28218484 -89644143 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 1888 171 7 3 chr9 28218507 28218816 -89643811 - AluJb SINE Alu 0 312 3 1974 164 0 7 chr9 28218820 28219124 -89643503 - AluJo SINE Alu -10 302 1 2041 92 0 121 chr9 28219243 28219591 -89643036 - AluSg SINE Alu -4 306 1 286 258 8 75 chr9 28219674 28219794 -89642833 + MIR SINE MIR 149 260 -2 272 263 168 0 chr9 28219895 28219990 -89642637 + MIR SINE MIR 119 229 -33 2292 85 3 0 chr9 28220136 28220453 -89642174 - AluSp SINE Alu 0 313 1 431 237 0 0 chr9 28221395 28221488 -89641139 + L1PB4 LINE L1 5976 6068 -88 249 328 59 34 chr9 28222121 28222240 -89640387 - MER5A DNA MER1_type -3 186 65 272 278 37 49 chr9 28222362 28222415 -89640212 + MER103 DNA DNA 6 58 -108 2288 113 0 0 chr9 28222415 28222724 -89639903 - AluSg SINE Alu -1 309 1 272 278 37 49 chr9 28222724 28222832 -89639795 + MER103 DNA DNA 58 165 -1 21 36 0 0 chr9 28223849 28223877 -89638750 + AT_rich Low_complexity Low_complexity 1 28 0 283 219 0 0 chr9 28224288 28224352 -89638275 + L1MB8 LINE L1 4804 4867 -1279 757 179 130 86 chr9 28224359 28224530 -89638097 + L1MB8 LINE L1 5865 6056 -122 1412 189 62 24 chr9 28224530 28224821 -89637806 + AluJo SINE Alu 1 302 0 757 179 130 86 chr9 28224821 28224950 -89637677 + L1MB8 LINE L1 6056 6178 0 403 133 81 204 chr9 28225473 28225684 -89636943 + MER53 DNA DNA 1 185 -4 1443 191 22 18 chr9 28226286 28226586 -89636041 + AluJo SINE Alu 21 312 0 1297 201 71 28 chr9 28227299 28227691 -89634936 + MLT1C LTR MaLR 3 411 -56 1510 209 15 0 chr9 28228635 28228908 -89633719 - AluJo SINE Alu -35 277 1 181 310 69 0 chr9 28229052 28229110 -89633517 - L2 LINE L2 -1 3312 3251 2178 96 0 27 chr9 28229143 28229436 -89633191 + AluSc SINE Alu 7 291 -18 2136 95 3 34 chr9 28229799 28230094 -89632533 + AluSx SINE Alu 1 286 -26 1360 195 29 46 chr9 28230869 28231176 -89631451 - AluJb SINE Alu 0 302 1 22 0 0 0 chr9 28231389 28231411 -89631216 + AT_rich Low_complexity Low_complexity 1 22 0 257 123 82 14 chr9 28231442 28231515 -89631112 - HAL1 LINE L1 -155 2352 2275 715 219 16 0 chr9 28231600 28231783 -89630844 - L1MA4 LINE L1 -7 6293 6108 1211 61 12 6 chr9 28231788 28231951 -89630676 + L1PA11 LINE L1 6010 6173 -1 4472 158 19 33 chr9 28231951 28233031 -89629596 - L1MA4 LINE L1 -190 6110 5042 1004 112 134 11 chr9 28233053 28233232 -89629395 - MSTA LTR MaLR -54 374 174 1078 127 0 0 chr9 28233232 28233382 -89629245 - AluSg/x SINE Alu -16 296 147 449 99 0 28 chr9 28233384 28233455 -89629172 - LTR7 LTR ERV1 -2 448 380 4266 159 16 4 chr9 28233566 28234371 -89628256 - L1MA4 LINE L1 -1096 5050 4236 2279 110 0 0 chr9 28234408 28234707 -89627920 + AluSx SINE Alu 2 300 -12 245 196 0 18 chr9 28236362 28236418 -89626209 - L1MC5 LINE L1 -99 7862 7808 23 33 0 0 chr9 28236468 28236498 -89626129 + AT_rich Low_complexity Low_complexity 1 30 0 2224 113 0 13 chr9 28237001 28237311 -89625316 - AluSx SINE Alu -6 306 1 1245 231 41 24 chr9 28237483 28237778 -89624849 + AluJo SINE Alu 1 300 -2 367 255 0 21 chr9 28237784 28237925 -89624702 + GA-rich Low_complexity Low_complexity 3 140 0 2541 62 0 3 chr9 28237999 28238304 -89624323 - AluY SINE Alu -7 304 1 194 314 12 70 chr9 28238406 28238492 -89624135 + MIR SINE MIR 84 164 -98 2020 129 3 7 chr9 28239525 28239827 -89622800 - AluSq SINE Alu -12 301 1 262 240 0 0 chr9 28240372 28240422 -89622205 + MER5A DNA MER1_type 9 58 -131 618 81 0 35 chr9 28240764 28240850 -89621777 + AluSg/x SINE Alu 209 291 -19 1680 149 81 50 chr9 28240997 28241139 -89621488 - L1MA4 LINE L1 -4 6296 6160 2350 47 6 38 chr9 28241139 28241456 -89621171 - AluY SINE Alu -4 307 1 1680 149 81 50 chr9 28241456 28241645 -89620982 - L1MA4 LINE L1 -140 6160 5949 2077 72 79 7 chr9 28241645 28241935 -89620692 - AluY SINE Alu 0 311 1 1680 149 81 50 chr9 28241935 28241984 -89620643 - L1MA4 LINE L1 -351 5949 5903 1576 100 0 0 chr9 28242225 28242435 -89620192 + AluSg/x SINE Alu 86 295 -14 208 244 12 12 chr9 28242550 28242636 -89619991 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 1527 196 28 11 chr9 28243400 28243685 -89618942 - AluJo SINE Alu -22 290 1 2569 62 0 3 chr9 28243876 28244184 -89618443 - AluY SINE Alu -4 307 1 214 247 82 82 chr9 28244231 28244316 -89618311 - MIR SINE MIR -11 251 167 918 273 127 18 chr9 28244378 28244891 -89617736 - L1MC4a LINE L1 -1915 5893 5325 2316 101 0 0 chr9 28245101 28245399 -89617228 + AluY SINE Alu 1 298 -13 2248 105 3 0 chr9 28245788 28246074 -89616553 - AluSg SINE Alu -23 287 1 2363 84 0 3 chr9 28246523 28246820 -89615807 + AluSg SINE Alu 1 296 -14 446 342 47 10 chr9 28246863 28247056 -89615571 + MIR SINE MIR 46 245 -17 680 242 29 99 chr9 28247758 28247873 -89614754 - L1ME4a LINE L1 -51 6070 5948 438 20 0 0 chr9 28247873 28247924 -89614703 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 680 242 29 99 chr9 28247924 28248263 -89614364 - L1ME4a LINE L1 -173 5948 5648 473 269 34 0 chr9 28248339 28248458 -89614169 + L2 LINE L2 3150 3272 0 2495 57 0 3 chr9 28248593 28248890 -89613737 + AluY SINE Alu 1 296 -15 276 250 76 21 chr9 28248955 28249099 -89613528 - L1ME4a LINE L1 -96 6025 5874 1759 188 3 3 chr9 28249108 28249406 -89613221 - AluJo SINE Alu -14 298 1 2255 100 0 7 chr9 28249406 28249705 -89612922 - AluSq SINE Alu -16 297 1 32 26 0 0 chr9 28251363 28251402 -89611225 + AT_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr9 28251432 28251468 -89611159 + AT_rich Low_complexity Low_complexity 1 36 0 2333 86 0 13 chr9 28251693 28252008 -89610619 + AluY SINE Alu 1 311 0 225 0 0 0 chr9 28252161 28252186 -89610441 + (TG)n Simple_repeat Simple_repeat 1 25 0 263 402 31 0 chr9 28252259 28252356 -89610271 + MIR SINE MIR 3 102 -160 312 172 35 0 chr9 28252380 28252438 -89610189 - MER92B LTR ERV1 -576 60 1 656 160 56 8 chr9 28252466 28252591 -89610036 - FLAM_C SINE Alu -2 131 1 262 162 27 0 chr9 28252660 28252734 -89609893 + (TA)n Simple_repeat Simple_repeat 1 76 0 368 292 117 53 chr9 28253772 28253933 -89608694 + L1ME4a LINE L1 5462 5611 -510 2238 91 0 20 chr9 28253933 28254229 -89608398 - AluSg SINE Alu -16 294 5 368 292 117 53 chr9 28254229 28254666 -89607961 + L1ME4a LINE L1 5611 6098 -23 4551 95 14 14 chr9 28254769 28255462 -89607165 + L1MA1 LINE L1 5610 6302 0 21 57 0 0 chr9 28255462 28255497 -89607130 + AT_rich Low_complexity Low_complexity 1 35 0 2202 120 13 0 chr9 28255710 28256010 -89606617 + AluSg SINE Alu 1 304 -6 194 222 0 79 chr9 28256710 28256741 -89605886 + L2 LINE L2 2992 3017 -255 2202 93 7 10 chr9 28256741 28257041 -89605586 + AluSx SINE Alu 1 299 -13 194 222 0 79 chr9 28257041 28257072 -89605555 + L2 LINE L2 3017 3049 -223 1229 299 75 9 chr9 28257078 28257519 -89605108 - MLT1H LTR MaLR -9 540 71 2344 208 50 80 chr9 28257567 28257616 -89605011 - L1ME1 LINE L1 -5 6161 6112 3442 170 70 4 chr9 28257616 28258259 -89604368 - L1MB2 LINE L1 -7 6164 5472 213 119 0 0 chr9 28258259 28258301 -89604326 + (TTG)n Simple_repeat Simple_repeat 1 42 0 3442 170 70 4 chr9 28258301 28258341 -89604286 - L1MB2 LINE L1 -699 5472 5436 2344 208 50 80 chr9 28258341 28259708 -89602919 - L1ME1 LINE L1 -54 6112 4790 2316 88 3 0 chr9 28259708 28260002 -89602625 - AluSc SINE Alu -14 295 1 203 250 77 0 chr9 28260897 28260949 -89601678 - L2 LINE L2 -3 3269 3214 23 0 0 0 chr9 28261248 28261271 -89601356 + AT_rich Low_complexity Low_complexity 1 23 0 1749 123 104 38 chr9 28261513 28261829 -89600798 - MER1B DNA MER1_type 0 337 1 257 367 22 0 chr9 28262382 28262472 -89600155 - L3 LINE CR1 -87 1490 1399 874 339 119 21 chr9 28262591 28263269 -89599358 - L2 LINE L2 -182 3090 2332 307 276 124 7 chr9 28264497 28264642 -89597985 - L1ME4a LINE L1 -169 5952 5791 413 304 95 12 chr9 28264684 28264852 -89597775 + MIR SINE MIR 5 186 -76 2472 55 0 0 chr9 28265351 28265641 -89596986 + AluY SINE Alu 1 290 -21 2203 110 0 7 chr9 28267107 28267417 -89595210 + AluSg SINE Alu 1 308 -2 5327 102 23 11 chr9 28267417 28268238 -89594389 - L1MA3 LINE L1 -180 6125 5295 3217 180 51 2 chr9 28268239 28268810 -89593817 - Tigger7 DNA MER2_type -134 599 1 216 321 25 49 chr9 28268844 28268925 -89593702 + MIR SINE MIR 50 128 -134 1235 122 35 44 chr9 28269094 28269323 -89593304 - L1 LINE L1 -1902 4244 4018 302 125 11 34 chr9 28269395 28269483 -89593144 + (TA)n Simple_repeat Simple_repeat 2 87 0 180 0 0 0 chr9 28269767 28269787 -89592840 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2271 103 0 3 chr9 28269843 28270145 -89592482 + AluSc SINE Alu 1 301 -8 2070 128 17 3 chr9 28270468 28270758 -89591869 - AluSx SINE Alu -18 294 1 945 65 8 0 chr9 28270781 28270904 -89591723 + THE1B-int LTR MaLR 1457 1580 0 1962 120 49 55 chr9 28270904 28271197 -89591430 + THE1B LTR MaLR 1 293 -71 2546 68 0 0 chr9 28271197 28271506 -89591121 - AluY SINE Alu -2 309 1 1962 120 49 55 chr9 28271506 28271578 -89591049 + THE1B LTR MaLR 293 364 0 17785 137 104 8 chr9 28271578 28273698 -89588929 - L1PA12 LINE L1 -4266 3318 821 2157 131 47 33 chr9 28273698 28274057 -89588570 + THE1B LTR MaLR 1 364 0 17785 137 104 8 chr9 28274057 28274964 -89587663 - L1PA12 LINE L1 -6763 821 3 566 241 23 1 chr9 28274969 28275111 -89587516 - MER33 DNA MER1_type -251 73 1 2079 174 42 38 chr9 28275195 28275581 -89587046 + MSTA LTR MaLR 1 391 -37 2069 129 10 0 chr9 28275581 28275876 -89586751 - AluSg SINE Alu -12 298 1 2079 174 42 38 chr9 28275876 28275915 -89586712 + MSTA LTR MaLR 391 428 0 189 0 0 0 chr9 28276170 28276191 -89586436 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2426 60 3 0 chr9 28276194 28276478 -89586149 - AluY SINE Alu -26 285 1 273 98 0 0 chr9 28276598 28276639 -89585988 + (TA)n Simple_repeat Simple_repeat 2 42 0 517 286 12 18 chr9 28277391 28277562 -89585065 - MARNA DNA Mariner -348 238 69 1696 106 24 0 chr9 28278040 28278295 -89584332 - L1P LINE L1 -2039 4107 3847 483 327 121 23 chr9 28279036 28279639 -89582988 + L1MC/D LINE L1 4594 5255 -891 180 0 0 0 chr9 28279646 28279666 -89582961 + (T)n Simple_repeat Simple_repeat 1 20 0 1753 82 41 0 chr9 28279666 28279885 -89582742 - AluSg SINE Alu -82 228 1 180 0 0 0 chr9 28279897 28279917 -89582710 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 344 216 131 93 chr9 28279921 28280157 -89582470 + L1MC/D LINE L1 5288 5532 -2276 1944 138 27 17 chr9 28280219 28280516 -89582111 + AluSx SINE Alu 1 300 -12 1702 155 60 3 chr9 28280560 28280844 -89581783 + AluJo SINE Alu 1 300 -12 2141 102 0 0 chr9 28281096 28281371 -89581256 - AluSg SINE Alu -1 309 35 239 143 0 18 chr9 28281865 28281921 -89580706 + (GA)n Simple_repeat Simple_repeat 2 56 0 1908 108 4 0 chr9 28283985 28284236 -89578391 + AluSx SINE Alu 24 275 -37 377 253 146 28 chr9 28284595 28284773 -89577854 - MIR SINE MIR -56 206 8 2238 107 0 0 chr9 28285105 28285394 -89577233 - AluSg SINE Alu -16 294 6 306 247 0 0 chr9 28285813 28285886 -89576741 - L1M4 LINE L1 -1534 4612 4540 2249 95 0 13 chr9 28285933 28286237 -89576390 - AluSc SINE Alu -9 300 1 24 32 0 0 chr9 28286617 28286648 -89575979 + AT_rich Low_complexity Low_complexity 1 31 0 5439 65 124 0 chr9 28286861 28287596 -89575031 - LTR12 LTR ERV1 0 826 1 1039 233 22 13 chr9 28287668 28287900 -89574727 - MER8 DNA MER2_type -4 235 2 2343 65 3 17 chr9 28287951 28288245 -89574382 + AluY SINE Alu 5 294 -17 876 150 0 7 chr9 28288410 28288557 -89574070 + AluSg/x SINE Alu 165 310 -2 231 309 27 0 chr9 28289415 28289525 -89573102 + MIR SINE MIR 129 241 -21 4406 79 8 18 chr9 28289640 28290246 -89572381 + L1PA7 LINE L1 5554 6153 -1 2131 228 110 6 chr9 28290648 28291158 -89571469 - MER82 DNA MER2_type 0 653 91 235 280 0 43 chr9 28291248 28291341 -89571286 + L2 LINE L2 3225 3313 0 501 304 157 9 chr9 28291463 28291680 -89570947 - MIR SINE MIR 0 262 14 285 311 0 73 chr9 28292500 28292651 -89569976 - L2 LINE L2 -218 3054 2915 261 374 80 20 chr9 28292729 28292978 -89569649 - L2 LINE L2 -499 2815 2552 429 141 0 0 chr9 28293961 28294032 -89568595 + (TG)n Simple_repeat Simple_repeat 2 72 0 234 0 0 0 chr9 28294142 28294168 -89568459 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 270 303 53 30 chr9 28294731 28294863 -89567764 - MIR SINE MIR -70 192 58 272 362 35 9 chr9 28295052 28295168 -89567459 + MIR3 SINE MIR 10 128 -80 229 281 9 53 chr9 28295237 28295351 -89567276 - L2 LINE L2 -31 3241 3133 180 111 0 0 chr9 28296968 28296995 -89565632 + (A)n Simple_repeat Simple_repeat 1 27 0 356 303 17 80 chr9 28297584 28297822 -89564805 - MIR SINE MIR -34 228 6 295 273 0 0 chr9 28297840 28297917 -89564710 + MER103 DNA DNA 41 117 -49 1851 156 0 11 chr9 28298307 28298590 -89564037 + AluJo SINE Alu 1 280 -32 254 306 36 18 chr9 28298662 28298773 -89563854 + MIR SINE MIR 28 140 -122 2358 79 23 0 chr9 28298784 28299088 -89563539 + AluY SINE Alu 1 311 0 611 275 97 14 chr9 28300542 28300782 -89561845 + MIR SINE MIR 4 262 0 252 338 103 28 chr9 28301070 28301215 -89561412 + MIR SINE MIR 28 183 -79 2209 103 3 17 chr9 28301810 28302131 -89560496 - AluSx SINE Alu 0 312 1 398 315 125 5 chr9 28302193 28302393 -89560234 - MIR SINE MIR -13 249 26 793 293 22 33 chr9 28302697 28302970 -89559657 + Charlie8 DNA MER1_type 7 276 -2141 245 259 241 0 chr9 28303688 28303796 -89558831 - L2 LINE L2 0 3313 3180 2376 178 93 34 chr9 28304249 28304265 -89558362 - MER74A LTR ERVL 0 558 544 1445 170 31 69 chr9 28304265 28304583 -89558044 - AluJo SINE Alu -6 306 1 2376 178 93 34 chr9 28304583 28305093 -89557534 - MER74A LTR ERVL -14 544 1 216 0 0 0 chr9 28305207 28305231 -89557396 + (TA)n Simple_repeat Simple_repeat 2 25 0 2102 64 0 11 chr9 28306538 28306805 -89555822 + AluY SINE Alu 48 311 0 453 269 151 11 chr9 28307224 28307410 -89555217 + MIR SINE MIR 2 213 -49 201 318 159 0 chr9 28307556 28307682 -89554945 + L2 LINE L2 3119 3264 -8 428 232 0 0 chr9 28308019 28308101 -89554526 - MER81 DNA DNA -32 82 1 274 295 11 21 chr9 28308924 28309019 -89553608 + MER5A DNA MER1_type 35 128 -61 462 218 204 20 chr9 28309039 28309186 -89553441 - MER5A DNA MER1_type -7 182 9 600 223 51 25 chr9 28309387 28309544 -89553083 - MER103 DNA DNA -2 164 4 182 161 0 0 chr9 28309587 28309618 -89553009 - MER5C DNA MER1_type -293 31 1 1877 126 37 4 chr9 28309961 28310232 -89552395 - AluJb SINE Alu -10 302 23 228 214 171 0 chr9 28310901 28311002 -89551625 + MIR3 SINE MIR 67 188 -20 2414 89 0 0 chr9 28311150 28311452 -89551175 + AluSq SINE Alu 1 302 -11 304 105 18 18 chr9 28311947 28312004 -89550623 + L1ME4a LINE L1 5846 5902 -219 468 219 20 55 chr9 28312039 28312185 -89550442 + L1ME4a LINE L1 5978 6118 -3 727 212 20 7 chr9 28312228 28312379 -89550248 - MER3 DNA MER1_type -56 153 1 575 263 42 46 chr9 28313500 28313670 -89548957 - MLT1F1 LTR MaLR -342 225 55 2287 119 0 0 chr9 28313670 28313982 -89548645 - AluSx SINE Alu 0 312 1 575 263 42 46 chr9 28313982 28314028 -89548599 - MLT1F1 LTR MaLR -512 55 10 21 0 0 0 chr9 28314028 28314049 -89548578 + AT_rich Low_complexity Low_complexity 1 21 0 2406 125 31 0 chr9 28314350 28314701 -89547926 - Tigger3(Golem) DNA MER2_type 0 3029 2668 2301 113 0 3 chr9 28315339 28315640 -89546987 - AluSx SINE Alu -12 300 1 584 289 67 0 chr9 28315811 28316005 -89546622 - MIR SINE MIR -28 234 28 1790 197 14 32 chr9 28316017 28316387 -89546240 - MLT1A1 LTR MaLR -2 363 1 438 264 178 0 chr9 28316710 28316918 -89545709 - MER102a DNA MER1_type -9 321 77 21 0 0 0 chr9 28316931 28316952 -89545675 + AT_rich Low_complexity Low_complexity 1 21 0 767 133 17 0 chr9 28318256 28318376 -89544251 - L1MB3 LINE L1 0 6183 6062 4985 73 12 20 chr9 28318857 28319927 -89542700 - SVA Other Other -954 1386 1 1197 234 58 0 chr9 28320211 28320472 -89542155 - MER58 DNA MER1_type -65 276 1 362 241 102 0 chr9 28320528 28320636 -89541991 + MIR SINE MIR 51 169 -93 552 268 146 34 chr9 28322605 28322839 -89539788 + MIR SINE MIR 4 254 -8 207 269 0 0 chr9 28323753 28323805 -89538822 + T-rich Low_complexity Low_complexity 4 55 0 474 206 29 0 chr9 28326149 28326251 -89536376 + MIR SINE MIR 71 175 -87 275 317 122 66 chr9 28326384 28326687 -89535940 - L2 LINE L2 -16 3256 2937 461 273 23 51 chr9 28326935 28327111 -89535516 + MIR3 SINE MIR 36 206 -2 2166 73 63 3 chr9 28327248 28327535 -89535092 + AluY SINE Alu 1 304 -7 207 255 39 20 chr9 28327622 28327673 -89534954 + MIR SINE MIR 83 134 -74 327 329 84 7 chr9 28329473 28329628 -89532999 + MIR SINE MIR 6 172 -90 1642 163 31 17 chr9 28330062 28330356 -89532271 + AluJb SINE Alu 1 298 -14 410 261 175 76 chr9 28331174 28331580 -89531047 - Charlie8 DNA MER1_type -1931 486 41 662 221 14 14 chr9 28334264 28334404 -89528223 - FLAM_A SINE Alu 0 142 3 1178 227 69 119 chr9 28334407 28335055 -89527572 - L1MC4 LINE L1 -103 7939 7324 744 147 26 64 chr9 28335421 28335577 -89527050 + MER106A DNA MER1_type 47 196 -40 32536 105 12 59 chr9 28337289 28339908 -89522719 + L1PA7 LINE L1 12 2753 -3401 2177 125 0 13 chr9 28339908 28340220 -89522407 + AluY SINE Alu 1 308 -3 32536 105 12 59 chr9 28340220 28342127 -89520500 + L1PA7 LINE L1 2753 4749 -1405 2372 72 3 7 chr9 28342127 28342431 -89520196 + AluY SINE Alu 9 311 0 32536 105 12 59 chr9 28342431 28343248 -89519379 + L1PA7 LINE L1 4749 4989 -1165 2334 90 0 3 chr9 28343248 28343548 -89519079 + AluY SINE Alu 1 299 -12 32536 105 12 59 chr9 28343548 28344662 -89517965 + L1PA7 LINE L1 4989 6154 0 237 326 10 20 chr9 28344906 28345004 -89517623 + MIR SINE MIR 47 143 -119 21 0 0 0 chr9 28345105 28345126 -89517501 + AT_rich Low_complexity Low_complexity 1 21 0 419 304 53 66 chr9 28345348 28345591 -89517036 + Charlie8 DNA MER1_type 17 256 -2161 2369 79 3 3 chr9 28345980 28346285 -89516342 - AluY SINE Alu -6 305 1 1172 246 137 19 chr9 28347233 28347655 -89514972 + L2 LINE L2 2842 3313 0 22 56 0 0 chr9 28347713 28347749 -89514878 + AT_rich Low_complexity Low_complexity 1 36 0 608 282 94 14 chr9 28347778 28347991 -89514636 - MIR SINE MIR -16 246 17 199 327 0 0 chr9 28349674 28349729 -89512898 - L2 LINE L2 -19 3253 3199 705 218 202 16 chr9 28349879 28350067 -89512560 - MIR SINE MIR -38 224 2 22 0 0 0 chr9 28350094 28350116 -89512511 + AT_rich Low_complexity Low_complexity 1 22 0 377 261 61 9 chr9 28350820 28350935 -89511692 + MER103 DNA DNA 3 123 -43 1878 196 47 47 chr9 28351672 28352101 -89510526 - MER63B DNA MER1_type 0 436 8 2180 137 49 23 chr9 28352144 28352532 -89510095 - L1MA8 LINE L1 -5 6286 5889 227 147 0 0 chr9 28352804 28352838 -89509789 + LTR16A1 LTR ERVL 3 36 -421 734 279 50 50 chr9 28352890 28353274 -89509353 + MERVL LTR ERVL 3471 3854 -1910 917 261 66 4 chr9 28353282 28353523 -89509104 + MER76 LTR ERV 5 260 -428 305 309 61 64 chr9 28353774 28354133 -89508494 + HAL1 LINE L1 2144 2501 -6 249 322 73 45 chr9 28354211 28354353 -89508274 + LTR16C LTR ERVL 1 150 -341 2655 151 69 0 chr9 28354353 28354776 -89507851 - LTR47A LTR ERVL 0 452 1 249 322 73 45 chr9 28354776 28354810 -89507817 + LTR16C LTR ERVL 150 182 -309 322 217 43 0 chr9 28354932 28355001 -89507626 - LTR16C LTR ERVL -162 329 258 351 336 29 7 chr9 28355279 28355416 -89507211 + MERVL LTR ERVL 442 581 -4415 301 371 35 5 chr9 28355849 28356051 -89506576 + MERVL LTR ERVL 4819 5026 -459 622 319 80 48 chr9 28356397 28356873 -89505754 + LTR16C LTR ERVL 1 491 0 337 298 7 43 chr9 28357004 28357145 -89505482 - MIR SINE MIR -110 152 17 22 35 0 0 chr9 28357728 28357757 -89504870 + AT_rich Low_complexity Low_complexity 1 29 0 2036 142 13 0 chr9 28358212 28358514 -89504113 + AluSx SINE Alu 1 306 -6 2248 56 3 28 chr9 28359326 28359657 -89502970 - AluY SINE Alu 0 324 1 743 225 0 0 chr9 28359879 28360021 -89502606 - MLT1H1 LTR MaLR 0 555 414 2272 110 0 0 chr9 28360266 28360565 -89502062 + AluSx SINE Alu 5 303 -9 378 304 22 22 chr9 28360792 28360927 -89501700 - MIR SINE MIR -110 152 18 2709 165 11 15 chr9 28361267 28361728 -89500899 - MLT1C LTR MaLR -8 459 1 897 172 0 8 chr9 28361791 28361925 -89500702 - FLAM_C SINE Alu 0 133 1 269 250 16 16 chr9 28362182 28362246 -89500381 - L2 LINE L2 -18 3254 3191 27 62 0 0 chr9 28363062 28363110 -89499517 + AT_rich Low_complexity Low_complexity 1 48 0 5415 103 13 4 chr9 28363116 28363894 -89498733 + L1PB3 LINE L1 5368 6152 -2 267 143 20 51 chr9 28363907 28364005 -89498622 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 1678 132 147 0 chr9 28364146 28364418 -89498209 - AluSx SINE Alu 0 312 1 2126 158 64 13 chr9 28364539 28364931 -89497696 + LTR3 LTR ERVK 5 416 -16 344 251 83 107 chr9 28365822 28366040 -89496587 - L1M4 LINE L1 -753 5393 5171 1930 136 0 24 chr9 28366040 28366334 -89496293 - AluJb SINE Alu -25 287 1 344 251 83 107 chr9 28366334 28366498 -89496129 - L1M4 LINE L1 -975 5171 5023 2626 36 3 0 chr9 28366498 28366801 -89495826 - AluY SINE Alu -7 304 1 344 251 83 107 chr9 28366801 28366911 -89495716 - L1M4 LINE L1 -1123 5023 4912 22 0 0 0 chr9 28367834 28367856 -89494771 + AT_rich Low_complexity Low_complexity 1 22 0 215 258 41 72 chr9 28371109 28371206 -89491421 + L2 LINE L2 3177 3270 -2 187 51 0 51 chr9 28371246 28371285 -89491342 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 340 259 22 29 chr9 28371686 28371825 -89490802 + (TATG)n Simple_repeat Simple_repeat 2 139 0 3427 197 11 14 chr9 28371877 28372522 -89490105 - MER82 DNA MER2_type -10 643 1 256 158 0 9 chr9 28372704 28372907 -89489720 + AluJo SINE Alu 1 288 -14 3743 135 56 7 chr9 28373183 28373879 -89488748 - L1MC2 LINE L1 -13 6331 5602 290 122 41 0 chr9 28373890 28373939 -89488688 + AluJ/FLAM SINE Alu 11 61 -241 439 106 106 24 chr9 28373944 28374029 -89488598 - L1MC2 LINE L1 -739 5605 5514 189 229 0 0 chr9 28374175 28374210 -89488417 + L2 LINE L2 1531 1565 -1749 2141 93 0 31 chr9 28374270 28374561 -89488066 + AluSx SINE Alu 23 304 -8 496 173 188 8 chr9 28374690 28374823 -89487804 - MIR SINE MIR -14 248 92 276 227 189 38 chr9 28375684 28375816 -89486811 + MIR SINE MIR 47 198 -64 2510 78 0 0 chr9 28376912 28377220 -89485407 + AluSc SINE Alu 1 308 -1 2518 74 0 0 chr9 28378183 28378492 -89484135 - AluSc SINE Alu 0 309 1 2167 113 10 10 chr9 28378809 28379111 -89483516 + AluSg SINE Alu 1 302 -8 297 295 188 13 chr9 28379225 28379374 -89483253 - MIR SINE MIR -3 259 85 219 36 0 0 chr9 28380172 28380200 -89482427 + (TAG)n Simple_repeat Simple_repeat 2 29 0 829 244 99 23 chr9 28380791 28381136 -89481491 - MER66A LTR ERV1 -10 468 98 645 203 127 19 chr9 28381152 28381439 -89481188 - MER41B LTR ERV1 -159 476 100 2098 111 17 0 chr9 28385061 28385359 -89477268 - AluSx SINE Alu -9 303 1 2335 225 73 13 chr9 28385869 28386483 -89476144 - MER82 DNA MER2_type -1 652 2 2411 91 0 0 chr9 28386619 28386926 -89475701 + AluSc SINE Alu 1 307 -2 441 236 64 0 chr9 28386986 28387096 -89475531 + MIR SINE MIR 56 172 -90 305 161 0 0 chr9 28387230 28387286 -89475341 + AluJb SINE Alu 120 175 -127 380 245 85 89 chr9 28387344 28387626 -89475001 - L1ME LINE L1 -464 5657 5377 * 441 208 113 24 chr9 28387621 28387789 -89474838 - HAL1b LINE L1 -888 460 278 1926 121 19 56 chr9 28388432 28388754 -89473873 - AluSx SINE Alu -2 310 1 1185 251 47 12 chr9 28390733 28391155 -89471472 - L1ME LINE L1 -2037 4109 3673 1233 160 27 0 chr9 28391160 28391385 -89471242 - L1MB4 LINE L1 -6 6174 5944 1235 121 12 0 chr9 28391387 28391560 -89471067 - AluSc SINE Alu 0 309 135 792 218 5 0 chr9 28391562 28391759 -89470868 - L1MB4 LINE L1 -222 5958 5761 442 144 19 19 chr9 28391785 28391889 -89470738 - L1ME LINE L1 -2446 3700 3597 * 832 303 122 43 chr9 28391888 28392568 -89470059 - L1M4 LINE L1 -5793 749 16 332 268 122 30 chr9 28392789 28392953 -89469674 + MIR SINE MIR 71 249 -13 25 0 0 0 chr9 28392953 28392978 -89469649 + AT_rich Low_complexity Low_complexity 1 25 0 352 258 83 50 chr9 28393123 28393243 -89469384 + MIR SINE MIR 80 203 -59 2193 120 0 0 chr9 28393349 28393648 -89468979 - AluSx SINE Alu -11 301 3 649 231 28 77 chr9 28394205 28394307 -89468320 - MER106A DNA MER1_type -1 235 130 1095 58 0 0 chr9 28394307 28394445 -89468182 + L1PA3 LINE L1 6018 6155 0 649 231 28 77 chr9 28394445 28394589 -89468038 - MER106A DNA MER1_type -106 130 1 253 108 0 0 chr9 28394894 28394931 -89467696 + AluSq SINE Alu 117 153 -150 1463 199 52 3 chr9 28395310 28395597 -89467030 - AluJb SINE Alu -11 301 1 1947 118 40 0 chr9 28395951 28396254 -89466373 - AluSx SINE Alu 0 314 1 2316 87 7 0 chr9 28396792 28397080 -89465547 + AluSc SINE Alu 1 290 -19 2883 73 13 0 chr9 28397261 28397644 -89464983 + L1PA8 LINE L1 5781 6168 -4 296 272 192 48 chr9 28397769 28397894 -89464733 - MER5A DNA MER1_type 0 189 47 442 287 102 0 chr9 28398278 28398435 -89464192 + MIR SINE MIR 16 188 -74 240 154 0 0 chr9 28398933 28398985 -89463642 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 762 258 57 0 chr9 28399100 28399294 -89463333 - MIR SINE MIR -47 215 11 566 279 46 63 chr9 28399627 28399864 -89462763 + MIR SINE MIR 2 234 -28 226 279 27 45 chr9 28400620 28400731 -89461896 + L2 LINE L2 822 930 -2384 240 280 215 26 chr9 28400827 28401166 -89461461 + L2 LINE L2 1370 1772 -1542 580 307 155 32 chr9 28401353 28402396 -89460231 + L2 LINE L2 1851 3312 -1 231 304 51 0 chr9 28404070 28404149 -89458478 - MIR SINE MIR -121 141 59 223 273 178 45 chr9 28404346 28404545 -89458082 + MIR SINE MIR 16 248 -14 7470 84 11 2 chr9 28404651 28406455 -89456172 - L1PA7 LINE L1 0 6154 4328 706 12 0 0 chr9 28406455 28406541 -89456086 + AluSg/x SINE Alu 219 304 -5 21609 116 29 95 chr9 28406541 28411175 -89451452 - L1PA7 LINE L1 -1817 4329 3 216 0 0 0 chr9 28411319 28411343 -89451284 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 524 256 65 65 chr9 28411602 28411848 -89450779 - MIR SINE MIR -10 252 7 734 224 88 19 chr9 28412811 28413016 -89449611 + MER58A DNA MER1_type 4 222 -2 852 209 94 0 chr9 28413025 28413216 -89449411 + MER3 DNA MER1_type 1 209 0 597 340 52 5 chr9 28414497 28414709 -89447918 + MIR SINE MIR 10 231 -31 41496 45 1 1 chr9 28416834 28422984 -89439643 - L1PA4 LINE L1 -6 6149 1 207 191 0 0 chr9 28423568 28423631 -89438996 + (TA)n Simple_repeat Simple_repeat 1 63 0 429 20 0 0 chr9 28423631 28423681 -89438946 + (TG)n Simple_repeat Simple_repeat 1 50 0 1669 170 22 0 chr9 28423687 28423957 -89438670 - AluJo SINE Alu -36 276 1 10757 154 36 12 chr9 28423967 28426866 -89435761 - L1MA8 LINE L1 -4 7308 4338 3730 237 96 26 chr9 28426863 28428925 -89433702 - L1MA8 LINE L1 -3629 3538 1619 * 307 342 21 43 chr9 28429805 28429992 -89432635 - L1MA8 LINE L1 -6984 184 2 398 226 171 0 chr9 28430184 28430279 -89432348 + MER6 DNA MER2_type -65 12 -853 7016 61 18 2 chr9 28430279 28431836 -89430791 - L1PA7 LINE L1 -11 6143 4570 398 226 171 0 chr9 28431836 28431910 -89430717 + MER6 DNA MER2_type 12 861 -4 22 0 0 0 chr9 28432854 28432876 -89429751 + AT_rich Low_complexity Low_complexity 1 22 0 497 248 78 0 chr9 28433695 28433824 -89428803 + MIR3 SINE MIR 65 203 -5 2146 165 40 3 chr9 28434582 28434934 -89427693 + MLT1A1 LTR MaLR 1 365 0 225 299 93 19 chr9 28435067 28435174 -89427453 - MER5A DNA MER1_type -21 168 54 * 240 379 30 15 chr9 28435085 28435217 -89427410 + MER5A DNA MER1_type 56 189 0 348 301 88 0 chr9 28435349 28435462 -89427165 - MER94 DNA DNA -11 123 1 22802 97 52 19 chr9 28435621 28441827 -89420800 - L1PA7 LINE L1 -3 6466 4 2516 77 0 27 chr9 28442703 28443041 -89419586 - L1PA8 LINE L1 -69 6103 5775 267 260 0 14 chr9 28443134 28443207 -89419420 - L1ME LINE L1 -249 5872 5801 383 275 38 23 chr9 28443803 28443934 -89418693 + MIR SINE MIR 34 166 -96 209 270 40 14 chr9 28444026 28444100 -89418527 + MIR3 SINE MIR 90 165 -43 184 358 45 50 chr9 28444980 28445159 -89417468 - L2 LINE L2 -159 3113 2936 447 356 63 48 chr9 28445950 28446617 -89416010 + L2 LINE L2 2555 3239 -33 349 283 19 82 chr9 28446710 28446869 -89415758 + MER5B DNA MER1_type 26 174 -4 21 0 0 0 chr9 28450360 28450381 -89412246 + AT_rich Low_complexity Low_complexity 1 21 0 1690 158 0 76 chr9 28450540 28450869 -89411758 + AluJo SINE Alu 1 304 -8 33 25 0 0 chr9 28450994 28451034 -89411593 + AT_rich Low_complexity Low_complexity 1 40 0 330 272 0 22 chr9 28451061 28451153 -89411474 - L1MC4 LINE L1 -1339 6703 6614 2213 78 0 20 chr9 28451172 28451465 -89411162 - AluSc SINE Alu -22 287 1 254 29 29 0 chr9 28452008 28452043 -89410584 + (TG)n Simple_repeat Simple_repeat 2 37 0 1040 153 148 0 chr9 28453318 28453507 -89409120 - MER20 DNA MER1_type -1 218 2 276 300 27 73 chr9 28454858 28455008 -89407619 - MER5A DNA MER1_type 0 189 47 995 199 33 0 chr9 28455037 28455218 -89407409 + MER5A DNA MER1_type 3 189 0 371 247 0 0 chr9 28455940 28456013 -89406614 + MER117 DNA MER1_type 125 197 0 459 182 107 41 chr9 28456952 28457073 -89405554 - MER94 DNA DNA 0 134 6 237 303 0 0 chr9 28457725 28457791 -89404836 + MIR SINE MIR 74 139 -123 210 283 0 0 chr9 28457895 28457941 -89404686 + polypurine Low_complexity Low_complexity 3 48 0 329 257 176 22 chr9 28457997 28458219 -89404408 + HAL1b LINE L1 1062 1317 -31 225 274 32 0 chr9 28459577 28459639 -89402988 + MER117 DNA MER1_type 1 64 -133 598 289 178 0 chr9 28459801 28459998 -89402629 - MIR SINE MIR -12 250 19 231 227 0 0 chr9 28460416 28460473 -89402154 - MIR SINE MIR -62 146 97 282 278 0 67 chr9 28461123 28461213 -89401414 + MER5A DNA MER1_type 105 188 -1 523 246 66 55 chr9 28461325 28461508 -89401119 + MIR SINE MIR 5 189 -73 613 279 106 66 chr9 28462083 28463125 -89399502 + L1MC/D LINE L1 4771 5851 -344 1847 135 14 17 chr9 28463215 28463504 -89399123 + AluJo SINE Alu 1 288 -24 246 268 35 3 chr9 28463645 28463771 -89398856 + L1ME4a LINE L1 5966 8041 -1 458 143 14 0 chr9 28463958 28464028 -89398599 - 5S rRNA rRNA -50 71 1 1314 131 5 5 chr9 28465041 28465239 -89397388 + MSTA LTR MaLR 1 198 -230 429 69 0 0 chr9 28465239 28465297 -89397330 - L1PA4 LINE L1 -169 5986 5929 1363 32 0 0 chr9 28465297 28465454 -89397173 + L1PA4 LINE L1 5999 6155 0 23 68 0 0 chr9 28465506 28465550 -89397077 + AT_rich Low_complexity Low_complexity 1 44 0 1008 126 73 138 chr9 28465550 28465811 -89396816 + MSTA LTR MaLR 185 428 0 458 217 35 9 chr9 28465930 28466045 -89396582 + L1ME LINE L1 5682 5799 -322 261 285 154 8 chr9 28466447 28466577 -89396050 + MIR SINE MIR 68 216 -46 789 249 34 38 chr9 28466748 28466985 -89395642 + MER106A DNA MER1_type 1 236 0 1533 169 24 30 chr9 28468210 28468505 -89394122 + AluJo SINE Alu 1 293 -19 203 287 58 11 chr9 28468546 28468633 -89393994 + MIR SINE MIR 99 189 -73 846 170 44 66 chr9 28468892 28469074 -89393553 + MER5A DNA MER1_type 12 189 0 378 237 53 41 chr9 28469074 28469243 -89393384 + HAL1 LINE L1 2330 2500 -7 488 338 119 15 chr9 28471899 28472242 -89390385 + L2 LINE L2 2599 2977 -337 1340 223 49 24 chr9 28472472 28472800 -89389827 - MLT1D LTR MaLR -53 452 117 1147 207 9 4 chr9 28472810 28473037 -89389590 + MER106A DNA MER1_type 7 234 -2 215 280 40 0 chr9 28473039 28473089 -89389538 + L2 LINE L2 3148 3199 -73 829 210 67 82 chr9 28473292 28473621 -89389006 + L2 LINE L2 2988 3311 -2 2233 210 47 32 chr9 28473948 28474305 -89388322 - L1ME3 LINE L1 -2 6160 5789 2137 149 15 66 chr9 28474305 28474714 -89387913 + MLT1B LTR MaLR 3 390 0 2233 210 47 32 chr9 28474714 28474955 -89387672 - L1ME3 LINE L1 -373 5789 5553 182 302 0 19 chr9 28475640 28475693 -89386934 + MIR3 SINE MIR 4 55 -153 987 142 82 0 chr9 28475734 28475917 -89386710 - MER2 DNA MER2_type -1 344 147 412 301 79 30 chr9 28476322 28476525 -89386102 - MIR SINE MIR -32 230 18 1713 172 17 27 chr9 28477263 28477559 -89385068 - AluJo SINE Alu -17 295 3 283 291 11 30 chr9 28478942 28479124 -89383503 - MIR SINE MIR -35 227 3 443 235 167 19 chr9 28480562 28480724 -89381903 - MER58A DNA MER1_type 0 224 39 583 203 33 33 chr9 28480729 28480882 -89381745 + L1MB7 LINE L1 5814 5966 -212 1310 110 20 0 chr9 28480884 28481084 -89381543 + Tigger2 DNA MER2_type 3 206 -2512 885 155 34 0 chr9 28481085 28481233 -89381394 + Tigger2 DNA MER2_type 2556 2708 -10 652 244 17 0 chr9 28481234 28481414 -89381213 + L1MB7 LINE L1 5966 6148 -36 251 293 53 0 chr9 28481420 28481495 -89381132 - MER58 DNA MER1_type -145 196 1 2633 240 96 27 chr9 28482239 28483424 -89379203 + L1ME LINE L1 3 1261 -4819 5537 147 34 13 chr9 28483771 28484542 -89378085 + L1MA9 LINE L1 4568 5321 -991 2320 105 3 0 chr9 28484542 28484847 -89377780 - AluSp SINE Alu -7 306 1 5537 147 34 13 chr9 28484847 28485781 -89376846 + L1MA9 LINE L1 5321 6312 0 7468 37 0 0 chr9 28486350 28487350 -89375277 + L1PA4 LINE L1 5177 6155 0 21 0 0 0 chr9 28487468 28487489 -89375138 + AT_rich Low_complexity Low_complexity 1 21 0 1150 151 169 4 chr9 28487696 28487974 -89374653 + MER33 DNA MER1_type 1 324 0 1193 137 0 0 chr9 28488375 28488536 -89374091 - FRAM SINE Alu -18 158 1 222 62 0 0 chr9 28488559 28488591 -89374036 + (A)n Simple_repeat Simple_repeat 1 32 0 490 245 0 0 chr9 28488613 28488711 -89373916 + MER5A DNA MER1_type 9 106 -83 833 238 16 5 chr9 28489282 28489467 -89373160 + MER91B DNA MER1_type 1 187 -3 689 288 162 45 chr9 28489737 28490095 -89372532 - L2 LINE L2 -3 3269 2870 690 173 30 30 chr9 28490096 28490229 -89372398 + MER5A DNA MER1_type 3 135 -54 251 264 110 0 chr9 28490869 28490960 -89371667 + L2 LINE L2 3210 3310 -3 1577 159 133 0 chr9 28491694 28491958 -89370669 - AluJb SINE Alu -13 299 1 2255 120 3 32 chr9 28492007 28492381 -89370246 + THE1C LTR MaLR 1 363 -12 274 219 14 27 chr9 28492565 28492638 -89369989 + LTR67 LTR ERVL 479 550 -7 1231 175 35 0 chr9 28494121 28494349 -89368278 - MER46A DNA MER2_type 0 236 1 2176 129 0 0 chr9 28494787 28495089 -89367538 + AluSx SINE Alu 1 302 -10 289 226 89 124 chr9 28495584 28495987 -89366640 + L1ME LINE L1 2170 2558 -3522 423 287 144 17 chr9 28496549 28496730 -89365897 + MIR SINE MIR 23 226 -36 1015 244 8 21 chr9 28497403 28497481 -89365146 - MIR SINE MIR 0 262 185 1353 191 50 28 chr9 28497481 28497696 -89364931 + AluJo SINE Alu 3 227 -85 2395 88 0 0 chr9 28497696 28497992 -89364635 + AluY SINE Alu 1 296 -15 1353 191 50 28 chr9 28497992 28498058 -89364569 + AluJo SINE Alu 227 290 -22 1015 244 8 21 chr9 28498058 28498213 -89364414 - MIR SINE MIR -77 185 32 303 269 97 48 chr9 28498218 28498363 -89364264 - MIR3 SINE MIR -3 205 54 223 315 77 46 chr9 28498545 28498675 -89363952 - MIR SINE MIR -82 180 47 211 379 100 29 chr9 28498678 28499029 -89363598 + L2 LINE L2 2817 3192 -80 282 348 101 18 chr9 28499035 28499262 -89363365 + MIR SINE MIR 3 248 -14 2232 109 0 0 chr9 28499300 28499602 -89363025 + AluSg SINE Alu 1 302 -8 285 300 102 37 chr9 28500391 28500620 -89362007 - MIR SINE MIR -1 261 15 276 351 0 0 chr9 28500731 28500808 -89361819 + MIR SINE MIR 7 83 -179 575 283 57 11 chr9 28500899 28501076 -89361551 - MIR SINE MIR -57 205 21 424 213 133 16 chr9 28501725 28501889 -89360738 + MER5A DNA MER1_type 4 189 0 1734 174 6 13 chr9 28501988 28502299 -89360328 + AluJo SINE Alu 1 309 -3 417 269 158 12 chr9 28502834 28503005 -89359622 + MLT1H LTR MaLR 15 210 -339 257 250 149 24 chr9 28503155 28503323 -89359304 + MLT1H LTR MaLR 345 533 -16 2167 124 0 13 chr9 28503352 28503659 -89358968 + AluSc SINE Alu 1 303 -6 197 350 70 10 chr9 28505020 28505120 -89357507 + MIR SINE MIR 157 262 0 464 248 70 45 chr9 28505543 28505700 -89356927 - MIR SINE MIR -49 213 53 590 297 83 15 chr9 28505704 28505970 -89356657 + L2 LINE L2 2881 3164 -149 211 111 0 28 chr9 28506082 28506118 -89356509 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 2038 108 56 3 chr9 28506207 28506494 -89356133 + AluSq SINE Alu 1 302 -11 211 188 62 0 chr9 28506648 28506696 -89355931 - L2 LINE L2 -4 3309 3259 565 93 0 0 chr9 28507922 28507997 -89354630 + AluS SINE Alu 1 75 -238 1072 62 0 0 chr9 28507997 28508142 -89354485 + L1PA7 LINE L1 6010 6154 0 2201 88 3 10 chr9 28508846 28509141 -89353486 - AluSg SINE Alu -17 293 1 21 0 0 0 chr9 28509685 28509706 -89352921 + AT_rich Low_complexity Low_complexity 1 21 0 375 302 101 16 chr9 28510500 28510629 -89351998 - L2 LINE L2 0 3272 3133 201 264 293 9 chr9 28510875 28511087 -89351540 - L3b LINE CR1 -176 1407 1136 1745 163 0 17 chr9 28511690 28511984 -89350643 - AluJb SINE Alu -23 289 1 298 306 116 35 chr9 28512859 28513032 -89349595 - MIR SINE MIR -27 235 49 380 292 11 0 chr9 28513094 28513183 -89349444 + L2 LINE L2 3224 3313 0 329 288 68 25 chr9 28513217 28513335 -89349292 - L2 LINE L2 0 3313 3191 600 228 13 74 chr9 28513576 28513841 -89348786 + MLT1H LTR MaLR 5 293 -256 258 186 85 76 chr9 28513831 28513949 -89348678 + MLT1H LTR MaLR 412 530 -12 * 354 297 104 16 chr9 28513976 28514168 -89348459 + L1ME LINE L1 5381 5589 -2219 642 300 40 4 chr9 28514186 28514436 -89348191 - MIR SINE MIR -1 261 3 2883 211 69 50 chr9 28514450 28515280 -89347347 + L1ME1 LINE L1 4863 5719 -447 2532 42 0 23 chr9 28515280 28515588 -89347039 + AluY SINE Alu 1 301 -10 2883 211 69 50 chr9 28515588 28516022 -89346605 + L1ME1 LINE L1 5719 6143 -23 320 246 85 0 chr9 28516078 28516196 -89346431 + L1ME LINE L1 5679 5806 -356 24 32 0 0 chr9 28516403 28516434 -89346193 + AT_rich Low_complexity Low_complexity 1 31 0 200 300 311 0 chr9 28516469 28516559 -89346068 + L2 LINE L2 3115 3232 -40 204 232 72 43 chr9 28516717 28516786 -89345841 + MIR SINE MIR 116 186 -76 204 373 25 17 chr9 28517522 28517640 -89344987 - L3 LINE CR1 -16 1561 1443 2407 81 0 0 chr9 28518012 28518307 -89344320 - AluSc SINE Alu -14 295 1 222 293 10 40 chr9 28518350 28518449 -89344178 + L2 LINE L2 2954 3049 -223 479 272 189 0 chr9 28518944 28519135 -89343492 + LTR33 LTR ERVL 127 353 -168 296 313 52 15 chr9 28519382 28519516 -89343111 - MIR SINE MIR -25 237 99 306 313 176 18 chr9 28519847 28520125 -89342502 + L2 LINE L2 2182 2503 -811 470 196 0 31 chr9 28520518 28520615 -89342012 + Tigger2 DNA MER2_type 2614 2707 -11 26 74 0 0 chr9 28520696 28520750 -89341877 + AT_rich Low_complexity Low_complexity 1 54 0 933 200 6 0 chr9 28520870 28521030 -89341597 - MER5A DNA MER1_type -1 188 28 363 147 59 0 chr9 28521397 28521465 -89341162 + Tigger2 DNA MER2_type 2553 2624 -94 596 233 70 52 chr9 28521470 28521642 -89340985 - MIR SINE MIR -65 197 23 2234 105 0 3 chr9 28521659 28521982 -89340645 + AluSp SINE Alu 1 322 0 421 289 138 4 chr9 28522556 28522809 -89339818 + L1ME LINE L1 5463 5749 -372 1822 142 16 67 chr9 28522894 28523210 -89339417 - AluJb SINE Alu -9 303 4 201 219 24 0 chr9 28523228 28523269 -89339358 - MIR SINE MIR -217 45 4 26 74 0 0 chr9 28523532 28523586 -89339041 + AT_rich Low_complexity Low_complexity 1 54 0 2464 86 0 3 chr9 28523600 28523903 -89338724 - AluSg SINE Alu -8 302 1 1025 181 110 8 chr9 28524096 28524350 -89338277 + HAL1 LINE L1 2 281 -2226 1814 147 7 33 chr9 28524479 28524661 -89337966 + AluJo SINE Alu 3 175 -137 704 0 9 56 chr9 28524661 28524768 -89337859 + (TTTTA)n Simple_repeat Simple_repeat 3 104 0 1814 147 7 33 chr9 28524768 28524891 -89337736 + AluJo SINE Alu 175 300 -12 2198 77 42 3 chr9 28525006 28525292 -89337335 - AluY SINE Alu -14 297 1 989 208 6 17 chr9 28525329 28525502 -89337125 + FAM SINE Alu 1 171 -4 1303 76 0 0 chr9 28525923 28526080 -89336547 - AluSg/x SINE Alu -12 300 144 815 192 0 8 chr9 28526081 28526211 -89336416 + AluJo SINE Alu 121 249 -63 22 0 0 0 chr9 28526704 28526726 -89335901 + AT_rich Low_complexity Low_complexity 1 22 0 2225 98 3 3 chr9 28526726 28527023 -89335604 - AluSp SINE Alu -16 297 1 2297 86 0 0 chr9 28527717 28528008 -89334619 - AluSc SINE Alu -13 296 6 2217 188 40 22 chr9 28528277 28528777 -89333850 + L1M4 LINE L1 4738 5246 -900 1532 136 0 0 chr9 28528884 28529098 -89333529 - AluSg SINE Alu -96 214 1 9532 111 14 5 chr9 28529104 28530531 -89332096 - L1PBa LINE L1 -4597 2266 827 4128 202 7 17 chr9 28530522 28531323 -89331304 + L1 LINE L1 3571 4379 -1767 * 2248 88 14 0 chr9 28531323 28531618 -89331009 + AluY SINE Alu 1 299 -12 4128 202 7 17 chr9 28531618 28531650 -89330977 + L1 LINE L1 4379 4410 -1736 213 39 0 0 chr9 28531650 28531676 -89330951 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 4128 202 7 17 chr9 28531676 28531722 -89330905 + L1 LINE L1 4410 4442 -1704 312 320 31 39 chr9 28531970 28532098 -89330529 - L2 LINE L2 0 3272 3146 449 308 184 24 chr9 28532871 28532885 -89329742 - L3 LINE CR1 -376 1201 1191 2098 112 20 10 chr9 28532885 28533190 -89329437 - AluSx SINE Alu -4 308 1 449 308 184 24 chr9 28533190 28533549 -89329078 - L3 LINE CR1 -386 1191 768 1475 149 42 42 chr9 28533598 28533860 -89328767 + MER2 DNA MER2_type 2 263 -82 800 157 30 37 chr9 28533910 28534044 -89328583 - FLAM_C SINE Alu 0 133 1 813 209 8 0 chr9 28534129 28534263 -89328364 + AluJo SINE Alu 2 136 -176 2592 323 31 42 chr9 28534510 28534881 -89327746 - Tigger7 DNA MER2_type -512 1975 1602 2163 96 3 56 chr9 28534881 28535203 -89327424 + AluSg SINE Alu 1 305 -5 2592 323 31 42 chr9 28535203 28536219 -89326408 - Tigger7 DNA MER2_type -885 1602 602 2266 96 3 7 chr9 28536219 28536522 -89326105 - AluSq SINE Alu -11 302 1 2592 323 31 42 chr9 28536522 28536623 -89326004 - Tigger7 DNA MER2_type -1885 602 501 1113 147 16 27 chr9 28537155 28537339 -89325288 + Tigger2a DNA MER2_type 1 182 -252 2623 200 61 62 chr9 28537478 28538380 -89324247 - L1ME LINE L1 -473 5693 4791 1713 179 34 3 chr9 28538380 28538671 -89323956 - AluJo SINE Alu -12 300 1 2623 200 61 62 chr9 28538671 28538720 -89323907 - L1ME LINE L1 -1375 4791 4743 2270 104 3 0 chr9 28538720 28539019 -89323608 - AluSx SINE Alu -12 300 1 2623 200 61 62 chr9 28539019 28539120 -89323507 - L1ME LINE L1 -1423 4743 4658 2374 203 42 75 chr9 28539118 28539409 -89323218 - L1ME LINE L1 -3025 3121 2822 * 2285 113 0 3 chr9 28539409 28539719 -89322908 - AluSg1 SINE Alu 0 309 1 2374 203 42 75 chr9 28539719 28539910 -89322717 - L1ME LINE L1 -3324 2822 2626 1572 211 7 0 chr9 28539910 28540194 -89322433 + AluJo SINE Alu 11 296 -16 2374 203 42 75 chr9 28540194 28540245 -89322382 - L1ME LINE L1 -3520 2626 2575 585 52 0 26 chr9 28540245 28540322 -89322305 - L1PA8 LINE L1 -2 6170 6096 2374 203 42 75 chr9 28540322 28540596 -89322031 - L1ME LINE L1 -3571 2575 2339 2266 107 0 0 chr9 28540801 28541100 -89321527 + AluSc SINE Alu 1 299 -10 2022 141 149 16 chr9 28541116 28541492 -89321135 - MSTB LTR MaLR 0 426 1 10095 187 8 2 chr9 28541492 28543132 -89319495 - MSTB-int LTR MaLR 0 1651 1 2276 150 94 13 chr9 28543132 28543526 -89319101 - MSTB LTR MaLR 0 426 1 291 308 44 33 chr9 28544125 28544216 -89318411 + L2 LINE L2 3126 3217 -55 207 242 30 146 chr9 28544753 28544918 -89317709 + L2 LINE L2 2829 2974 -340 1612 92 0 0 chr9 28545667 28545884 -89316743 - pTR5 LTR ERV1 -2047 391 175 260 276 10 0 chr9 28545891 28545989 -89316638 - LTR30 LTR ERV1 -80 642 544 5237 124 51 48 chr9 28545989 28547097 -89315530 - pTR5 LTR ERV1 -413 2025 741 212 269 0 39 chr9 28547097 28547175 -89315452 + MIR SINE MIR 188 262 0 646 277 113 9 chr9 28547498 28547826 -89314801 + HAL1 LINE L1 2 363 -2144 1861 95 0 0 chr9 28547826 28548058 -89314569 + AluSc SINE Alu 1 232 -77 2271 100 0 7 chr9 28549138 28549437 -89313190 + AluSq SINE Alu 1 297 -16 1838 178 3 3 chr9 28549437 28549735 -89312892 + AluJo SINE Alu 1 298 -14 309 237 65 47 chr9 28549744 28549913 -89312714 + L1ME4a LINE L1 5874 6045 -76 2514 57 0 0 chr9 28549953 28550249 -89312378 - AluY SINE Alu -15 296 1 3193 145 38 99 chr9 28550270 28551000 -89311627 + L1MB8 LINE L1 5428 6106 -72 661 215 16 0 chr9 28551000 28551121 -89311506 - FLAM_A SINE Alu -10 123 1 3193 145 38 99 chr9 28551121 28551190 -89311437 + L1MB8 LINE L1 6106 6178 0 967 250 130 32 chr9 28551280 28551688 -89310939 + HAL1 LINE L1 584 1031 -1476 2263 169 71 22 chr9 28551704 28552166 -89310461 + L1MC3 LINE L1 5782 6266 -1519 234 269 184 14 chr9 28552434 28552575 -89310052 - MIR SINE MIR -32 230 66 2386 82 0 3 chr9 28552661 28552954 -89309673 + AluY SINE Alu 1 292 -19 185 263 118 26 chr9 28553389 28553465 -89309162 - MIR SINE MIR -160 102 20 201 39 0 0 chr9 28553542 28553568 -89309059 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2021 125 0 3 chr9 28553572 28553859 -89308768 - AluJb SINE Alu -26 286 1 21 0 0 0 chr9 28554580 28554601 -89308026 + AT_rich Low_complexity Low_complexity 1 21 0 2302 91 0 0 chr9 28555053 28555349 -89307278 - AluSg SINE Alu -14 296 1 561 286 94 4 chr9 28556214 28556448 -89306179 + L1ME LINE L1 5566 5820 -301 2392 63 0 3 chr9 28556458 28556772 -89305855 + AluY SINE Alu 1 313 0 571 304 65 20 chr9 28557385 28557632 -89304995 - MIR SINE MIR 0 262 5 331 250 0 42 chr9 28557915 28557987 -89304640 - L2 LINE L2 0 3313 3245 2432 66 0 10 chr9 28558061 28558362 -89304265 - AluY SINE Alu -13 298 1 397 89 0 0 chr9 28558461 28558517 -89304110 - MADE1 DNA Mariner 0 80 25 296 205 145 6 chr9 28558532 28558710 -89303917 + L1ME3A LINE L1 5191 5442 -800 466 296 159 11 chr9 28558744 28559116 -89303511 + L1ME3A LINE L1 5530 5956 -214 387 336 148 0 chr9 28559396 28559613 -89303014 - L2 LINE L2 -611 2703 2455 206 268 0 70 chr9 28560747 28560818 -89301809 + L2 LINE L2 3173 3238 -75 2177 125 3 0 chr9 28560821 28561125 -89301502 - AluSx SINE Alu -7 305 1 2451 179 85 0 chr9 28561376 28561823 -89300804 - MLT1D LTR MaLR 0 505 21 324 262 8 74 chr9 28561936 28562058 -89300569 - MIR SINE MIR -22 240 127 556 247 232 58 chr9 28562114 28562563 -89300064 + MLT1H LTR MaLR 23 549 0 180 320 0 0 chr9 28562563 28562613 -89300014 - MIR SINE MIR -189 73 24 1896 149 13 0 chr9 28562665 28562966 -89299661 + AluSx SINE Alu 2 306 -6 313 204 5 0 chr9 28562980 28563056 -89299571 + MIR3 SINE MIR 79 156 -52 2436 91 0 0 chr9 28563660 28563969 -89298658 - AluY SINE Alu -2 309 1 407 295 149 24 chr9 28564323 28564618 -89298009 + L2 LINE L2 2941 3272 0 255 319 35 0 chr9 28564944 28565060 -89297567 + MER113 DNA MER1_type? 1 120 -401 477 243 29 6 chr9 28565101 28565274 -89297353 + (TA)n Simple_repeat Simple_repeat 1 177 0 28 29 0 0 chr9 28565274 28565309 -89297318 + AT_rich Low_complexity Low_complexity 1 35 0 2271 101 3 16 chr9 28565393 28565701 -89296926 - AluSp SINE Alu -9 304 1 504 340 48 10 chr9 28566309 28566518 -89296109 - L2 LINE L2 -187 3085 2869 210 191 0 0 chr9 28566826 28566873 -89295754 + (CA)n Simple_repeat Simple_repeat 1 47 0 321 306 86 53 chr9 28567340 28567549 -89295078 - MIR SINE MIR 0 262 47 495 254 153 62 chr9 28567600 28567985 -89294642 - MLT1K LTR MaLR -4 584 165 1590 197 7 7 chr9 28568087 28568381 -89294246 - AluJo SINE Alu -18 294 1 331 258 196 6 chr9 28568382 28568545 -89294082 + MIR SINE MIR 69 262 0 2494 53 0 13 chr9 28569569 28569873 -89292754 + AluY SINE Alu 1 300 -11 318 336 136 30 chr9 28569977 28570150 -89292477 + L2 LINE L2 2138 2291 -1023 2156 104 14 0 chr9 28570150 28570437 -89292190 + AluSg SINE Alu 1 291 -19 318 336 136 30 chr9 28570437 28571004 -89291623 + L2 LINE L2 2291 2957 -357 2023 157 0 0 chr9 28571211 28571516 -89291111 - AluJb SINE Alu -7 305 1 334 312 60 6 chr9 28571672 28571866 -89290761 + L2 LINE L2 3134 3305 -8 297 139 0 0 chr9 28572082 28572125 -89290502 + MADE1 DNA Mariner 1 43 -37 2257 117 0 0 chr9 28572143 28572442 -89290185 - AluSg SINE Alu -11 299 1 2007 123 7 0 chr9 28573120 28573418 -89289209 - AluSc SINE Alu 0 300 1 450 286 81 11 chr9 28573445 28573635 -89288992 - MIR SINE MIR -41 221 16 * 657 315 47 47 chr9 28573610 28574016 -89288611 - L3 LINE CR1 -453 1124 719 2357 84 3 3 chr9 28574529 28574828 -89287799 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr9 28577042 28577073 -89285554 + AT_rich Low_complexity Low_complexity 1 31 0 222 128 0 0 chr9 28577453 28577492 -89285135 + (CTG)n Simple_repeat Simple_repeat 1 39 0 566 276 71 22 chr9 28578439 28578664 -89283963 + MIR SINE MIR 20 255 -7 2279 96 36 0 chr9 28578794 28579095 -89283532 + AluSx SINE Alu 1 312 0 685 262 7 0 chr9 28579542 28579691 -89282936 + MER82 DNA MER2_type 498 647 -6 389 379 127 19 chr9 28579706 28580068 -89282559 - L2 LINE L2 0 3272 2872 213 240 0 0 chr9 28580248 28580298 -89282329 + (TA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr9 28580821 28580843 -89281784 + AT_rich Low_complexity Low_complexity 1 22 0 680 215 52 42 chr9 28580881 28581072 -89281555 - MER106A DNA MER1_type 0 236 44 234 0 0 0 chr9 28581080 28581106 -89281521 + (A)n Simple_repeat Simple_repeat 1 26 0 2154 67 7 7 chr9 28581106 28581413 -89281214 + AluY SINE Alu 1 307 0 2233 106 7 0 chr9 28581739 28582042 -89280585 - AluSx SINE Alu -7 305 1 2914 150 45 10 chr9 28582346 28582854 -89279773 + L1MB2 LINE L1 5643 6168 -3 1332 189 12 24 chr9 28583050 28583304 -89279323 - MER46C DNA MER2_type -1 337 87 2005 27 0 0 chr9 28583381 28583601 -89279026 - L1PA5 LINE L1 -9 6145 5926 867 142 213 64 chr9 28583843 28583911 -89278716 + MER33 DNA MER1_type 1 58 -2527 1828 155 0 7 chr9 28583911 28584223 -89278404 + AluJb SINE Alu 1 310 0 867 142 213 64 chr9 28584223 28584435 -89278192 + MER33 DNA MER1_type 58 324 0 587 105 23 0 chr9 28584653 28584739 -89277888 + MER67A LTR ERV1 1 88 -455 2408 203 93 48 chr9 28584741 28584993 -89277634 + MER67B LTR ERV1 14 253 -408 2418 146 67 15 chr9 28584993 28585397 -89277230 - MSTB LTR MaLR 0 426 2 2408 203 93 48 chr9 28585397 28585764 -89276863 + MER67B LTR ERV1 253 661 0 23 33 0 0 chr9 28585948 28585978 -89276649 + AT_rich Low_complexity Low_complexity 1 30 0 2299 90 3 0 chr9 28587087 28587377 -89275250 - AluSc SINE Alu -18 291 1 512 224 0 22 chr9 28588823 28588957 -89273670 + L1MA9 LINE L1 6157 6287 -25 642 193 0 0 chr9 28588971 28589085 -89273542 - AluSg/x SINE Alu -3 309 196 248 241 0 0 chr9 28589606 28589664 -89272963 - AluS SINE Alu -244 58 1 3043 191 111 14 chr9 28589664 28590287 -89272340 - L1M4c LINE L1 -5678 706 24 262 329 60 27 chr9 28590618 28590767 -89271860 - MLT1I LTR MaLR -255 154 1 219 331 70 14 chr9 28590970 28591102 -89271525 + L2 LINE L2 3163 3305 -8 1876 189 11 50 chr9 28591102 28591259 -89271368 + MLT1A1 LTR MaLR 1 163 -202 2316 105 3 0 chr9 28591259 28591563 -89271064 + AluSp SINE Alu 1 305 -8 1876 189 11 50 chr9 28591563 28591785 -89270842 + MLT1A1 LTR MaLR 163 365 0 684 254 39 93 chr9 28592654 28592933 -89269694 - MER102a DNA MER1_type -6 324 61 28 29 0 0 chr9 28593014 28593049 -89269578 + AT_rich Low_complexity Low_complexity 1 35 0 4617 178 116 6 chr9 28593053 28594051 -89268576 + L1MC3 LINE L1 6676 7783 -2 656 165 338 0 chr9 28594171 28594304 -89268323 - MER45A DNA AcHobo 0 178 1 192 242 84 151 chr9 28594831 28594863 -89267764 - MIR SINE MIR -67 141 108 1814 195 51 38 chr9 28594863 28595257 -89267370 + MER57A LTR ERV1 1 399 -4 192 242 84 151 chr9 28595257 28595351 -89267276 - MIR SINE MIR -100 108 38 622 262 160 39 chr9 28595653 28595935 -89266692 + MER102b DNA MER1_type 1 316 -25 272 365 17 0 chr9 28596479 28596594 -89266033 + Tigger8 DNA MER2_type 2 118 -548 608 211 77 0 chr9 28597022 28597178 -89265449 - L1ME4a LINE L1 -85 6036 5869 458 216 288 7 chr9 28597581 28597720 -89264907 - MER5B DNA MER1_type 0 178 1 930 227 11 5 chr9 28597729 28597914 -89264713 + MER5A DNA MER1_type 2 187 -2 578 247 57 25 chr9 28597982 28598140 -89264487 + MIR SINE MIR 26 188 -74 666 211 106 0 chr9 28598537 28598698 -89263929 - MER5A DNA MER1_type 0 189 12 446 258 47 12 chr9 28599054 28599220 -89263407 - MIR SINE MIR -48 214 44 289 257 69 83 chr9 28599859 28600003 -89262624 - MIR3 SINE MIR -64 144 3 474 247 53 27 chr9 28600030 28600180 -89262447 + L3 LINE CR1 1357 1510 -67 262 313 106 12 chr9 28600188 28600348 -89262279 - MER5B DNA MER1_type -3 175 1 546 260 90 19 chr9 28600430 28600639 -89261988 - MIR SINE MIR 0 262 36 2112 73 95 0 chr9 28601295 28601569 -89261058 - AluSc SINE Alu -9 300 1 256 235 0 0 chr9 28602266 28602317 -89260310 + MIR3 SINE MIR 151 201 -7 1696 176 3 7 chr9 28602682 28602966 -89259661 - AluJo SINE Alu -17 295 13 235 281 58 41 chr9 28603038 28603159 -89259468 + MIR SINE MIR 27 149 -113 180 0 0 0 chr9 28603750 28603770 -89258857 + (TA)n Simple_repeat Simple_repeat 2 21 0 470 266 165 32 chr9 28604137 28604355 -89258272 + MIR SINE MIR 16 262 0 430 276 35 9 chr9 28604996 28605112 -89257515 - MER103 DNA DNA -45 121 3 213 346 39 0 chr9 28605334 28605412 -89257215 + L3b LINE CR1 1476 1556 -27 248 282 51 26 chr9 28606336 28606414 -89256213 - L2 LINE L2 -10 3262 3183 297 280 95 52 chr9 28607127 28607368 -89255259 + MIR SINE MIR 3 262 0 584 268 108 21 chr9 28608412 28608606 -89254021 + MIR SINE MIR 46 256 -6 1179 211 14 9 chr9 28608950 28609163 -89253464 + MER20 DNA MER1_type 4 217 -2 1455 112 10 10 chr9 28609502 28609708 -89252919 - L1PB1 LINE L1 -3 6148 5943 852 295 135 50 chr9 28609720 28610168 -89252459 + L2 LINE L2 2332 2741 -572 1081 172 50 0 chr9 28610168 28610348 -89252279 + MER5A DNA MER1_type 1 189 0 852 295 135 50 chr9 28610348 28610800 -89251827 + L2 LINE L2 2741 3313 0 266 304 27 27 chr9 28610830 28610978 -89251649 - MER117 DNA MER1_type 0 197 50 32 0 0 0 chr9 28610978 28611010 -89251617 + AT_rich Low_complexity Low_complexity 1 32 0 206 105 26 0 chr9 28611087 28611125 -89251502 + (TA)n Simple_repeat Simple_repeat 2 40 0 1185 135 19 53 chr9 28611125 28611333 -89251294 - AluSg/x SINE Alu -27 285 85 901 143 0 0 chr9 28611401 28611534 -89251093 - FLAM_C SINE Alu 0 133 1 192 265 59 29 chr9 28611581 28611649 -89250978 - MIR SINE MIR -166 96 27 1816 161 92 18 chr9 28611753 28612089 -89250538 + MLT1A1 LTR MaLR 1 361 -4 504 271 39 19 chr9 28613077 28613232 -89249395 + MER5A DNA MER1_type 7 164 -25 374 226 29 20 chr9 28613769 28613871 -89248756 + MIR SINE MIR 54 156 -106 234 0 0 0 chr9 28614405 28614431 -89248196 + (TG)n Simple_repeat Simple_repeat 2 27 0 705 257 101 25 chr9 28614666 28614903 -89247724 - MIR SINE MIR -4 258 4 1354 173 47 11 chr9 28616199 28616477 -89246150 + L1MA8 LINE L1 6004 6291 0 407 303 104 26 chr9 28616757 28616988 -89245639 + MIR SINE MIR 2 250 -12 373 198 0 37 chr9 28617484 28617565 -89245062 + LTR67 LTR ERVL 478 555 -2 256 289 97 9 chr9 28617896 28618010 -89244617 - MIR3 SINE MIR -45 163 40 578 205 89 0 chr9 28618839 28618951 -89243676 - MER20 DNA MER1_type 0 219 98 340 310 29 58 chr9 28619394 28619568 -89243059 + MIR SINE MIR 86 254 -8 236 238 12 71 chr9 28619937 28620021 -89242606 + MER116 DNA Mariner 2 80 0 439 322 106 28 chr9 28620717 28621152 -89241475 + L2 LINE L2 2230 2698 -616 562 298 85 52 chr9 28621311 28621731 -89240896 + L2 LINE L2 2796 3227 -45 589 280 106 5 chr9 28623022 28623229 -89239398 + MIR SINE MIR 23 250 -12 469 287 47 13 chr9 28623306 28623456 -89239171 + L2 LINE L2 3159 3313 0 187 308 0 0 chr9 28623537 28623589 -89239038 + L2 LINE L2 3262 3313 0 810 134 0 17 chr9 28624551 28624670 -89237957 - AluSg SINE Alu 0 312 196 1072 114 0 0 chr9 28624671 28624811 -89237816 - AluSg SINE Alu -170 140 1 5616 145 23 45 chr9 28624822 28625377 -89237250 - L1MA4 LINE L1 -1 6299 5733 2178 128 3 6 chr9 28625377 28625690 -89236937 - AluSx SINE Alu 0 312 1 5616 145 23 45 chr9 28625690 28626129 -89236498 - L1MA4 LINE L1 -567 5733 5327 2450 100 0 0 chr9 28626129 28626439 -89236188 - AluSg SINE Alu 0 310 1 5616 145 23 45 chr9 28626439 28626689 -89235938 - L1MA4 LINE L1 -973 5327 5073 2819 157 52 10 chr9 28626657 28627867 -89234760 + L1MA4 LINE L1 3633 5083 -1063 * 2163 122 10 0 chr9 28627867 28628170 -89234457 - AluSq SINE Alu -7 306 1 2819 157 52 10 chr9 28628170 28628195 -89234432 + L1MB4 LINE L1 5083 5106 -1040 500 286 119 0 chr9 28629998 28630183 -89232444 - MIR SINE MIR -1 261 55 428 289 8 8 chr9 28630178 28630299 -89232328 - L2 LINE L2 0 3313 3193 * 4328 155 23 12 chr9 28630398 28631146 -89231481 + L1MB4 LINE L1 5425 6180 0 339 75 19 0 chr9 28631788 28631841 -89230786 - L1ME4a LINE L1 0 6121 6068 408 254 56 0 chr9 28631895 28632021 -89230606 - L1ME4a LINE L1 -206 5915 5783 217 196 0 36 chr9 28632674 28632714 -89229913 + GA-rich Low_complexity Low_complexity 2 41 -14 2006 132 40 3 chr9 28632714 28633039 -89229588 + L1MC2 LINE L1 5999 6335 -9 217 196 0 36 chr9 28633039 28633054 -89229573 + GA-rich Low_complexity Low_complexity 41 55 0 205 243 0 0 chr9 28633572 28633609 -89229018 + polypyrimidine Low_complexity Low_complexity 4 40 0 434 311 105 38 chr9 28634548 28634892 -89227735 - L2 LINE L2 -583 2731 2365 2305 83 30 7 chr9 28635893 28636194 -89226433 - AluSx SINE Alu -4 308 1 463 238 19 44 chr9 28636344 28636504 -89226123 + L1MD3 LINE L1 7826 7981 -14 1634 161 76 17 chr9 28637578 28637869 -89224758 - AluJo SINE Alu -4 308 1 2401 67 0 3 chr9 28638115 28638441 -89224186 + AluY SINE Alu 1 325 0 253 241 253 0 chr9 28638711 28638790 -89223837 - MIR SINE MIR -3 259 161 1971 96 6 93 chr9 28638814 28639146 -89223481 + AluSx SINE Alu 1 303 -9 8812 182 19 4 chr9 28639149 28641489 -89221138 + L1PB1 LINE L1 3414 5791 -360 432 0 0 0 chr9 28641582 28641630 -89220997 + (TA)n Simple_repeat Simple_repeat 2 49 0 2431 138 0 0 chr9 28641630 28641986 -89220641 + L1PB1 LINE L1 5796 6151 0 2316 88 0 3 chr9 28642130 28642425 -89220202 - AluSq SINE Alu -19 294 1 1116 266 117 39 chr9 28642504 28643125 -89219502 + L2 LINE L2 2634 3313 0 206 174 43 22 chr9 28644133 28644179 -89218448 - L2 LINE L2 -5 3267 3221 274 262 0 0 chr9 28644187 28644248 -89218379 + MIR SINE MIR 85 145 -63 1038 237 40 16 chr9 28644848 28645097 -89217530 - MIR SINE MIR -7 255 1 2401 70 10 0 chr9 28646129 28646428 -89216199 + AluSp SINE Alu 3 304 -9 944 201 21 16 chr9 28646454 28646648 -89215979 - MER46C DNA MER2_type -29 309 115 543 256 156 15 chr9 28647062 28647261 -89215366 - MIR SINE MIR -18 244 18 298 297 117 0 chr9 28649156 28649267 -89213360 - L2 LINE L2 0 3272 3149 445 246 157 15 chr9 28649273 28649407 -89213220 - MER5A DNA MER1_type -2 187 35 225 318 84 9 chr9 28649487 28649594 -89213033 - L2 LINE L2 -243 3029 2915 186 301 48 39 chr9 28653475 28653578 -89209049 + L2 LINE L2 3164 3267 -5 212 321 0 0 chr9 28653660 28653713 -89208914 - L3b LINE CR1 -9 1574 1522 30 59 0 0 chr9 28654250 28654301 -89208326 + AT_rich Low_complexity Low_complexity 1 51 0 791 285 182 27 chr9 28655250 28655886 -89206741 + L2 LINE L2 1901 2635 -679 1926 204 90 51 chr9 28655886 28656081 -89206546 + MER34C LTR ERV1 1 187 -398 375 23 0 0 chr9 28656081 28656125 -89206502 + (TC)n Simple_repeat Simple_repeat 1 44 0 1926 204 90 51 chr9 28656125 28656482 -89206145 + MER34C LTR ERV1 187 575 -10 523 317 91 43 chr9 28656495 28656617 -89206010 + L2 LINE L2 2643 2758 -555 2072 126 0 3 chr9 28656617 28656934 -89205693 - AluSq SINE Alu 0 316 1 523 317 91 43 chr9 28656934 28657196 -89205431 + L2 LINE L2 2758 3045 -268 356 259 80 0 chr9 28657311 28657423 -89205204 - L2 LINE L2 0 3313 3193 277 321 43 62 chr9 28657402 28657564 -89205063 + L2 LINE L2 3107 3265 -7 * 404 305 50 93 chr9 28657757 28658302 -89204325 - L2 LINE L2 -134 3179 2661 218 246 210 29 chr9 28660099 28660237 -89202390 - MIR SINE MIR 0 262 100 212 83 0 28 chr9 28660421 28660457 -89202170 + (CATA)n Simple_repeat Simple_repeat 4 38 0 228 250 44 0 chr9 28660869 28660937 -89201690 + MIR SINE MIR 74 144 -118 1871 141 17 14 chr9 28661890 28662180 -89200447 - MER1B DNA MER1_type 0 339 49 * 3766 148 45 7 chr9 28662172 28662774 -89199853 - Tigger7 DNA MER2_type -107 626 2 1904 175 65 20 chr9 28662923 28663324 -89199303 + Charlie1 DNA MER1_type 2343 2761 0 275 212 35 12 chr9 28663375 28663460 -89199167 + L2 LINE L2 3108 3194 -119 350 219 170 81 chr9 28663469 28663878 -89198749 + LTR33A LTR ERVL 1 509 -14 1044 167 44 0 chr9 28664041 28664221 -89198406 - MER5A DNA MER1_type -1 188 1 232 219 61 49 chr9 28664949 28665031 -89197596 - MER117 DNA MER1_type -16 181 99 467 133 0 12 chr9 28665152 28665235 -89197392 + (GAAA)n Simple_repeat Simple_repeat 2 83 0 1076 121 6 0 chr9 28665235 28665408 -89197219 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 526 272 108 24 chr9 28665743 28665956 -89196671 + MIR SINE MIR 31 261 -1 484 274 48 67 chr9 28666254 28666462 -89196165 - MIR SINE MIR -8 254 51 428 293 133 16 chr9 28667735 28667923 -89194704 - MIR SINE MIR -6 256 47 732 246 127 31 chr9 28669214 28669391 -89193236 + MIR SINE MIR 13 218 -44 2351 114 42 33 chr9 28669391 28669752 -89192875 - THE1B LTR MaLR 0 364 1 732 246 127 31 chr9 28669752 28669802 -89192825 + MIR SINE MIR 218 262 0 449 242 142 64 chr9 28670431 28670650 -89191977 - MIR SINE MIR -4 258 23 2069 129 0 16 chr9 28670766 28671077 -89191550 + AluSx SINE Alu 1 306 -6 232 301 269 0 chr9 28671337 28671430 -89191197 + L2 LINE L2 3196 3313 0 198 0 0 0 chr9 28671625 28671647 -89190980 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 403 318 76 42 chr9 28671758 28671994 -89190633 + MIR SINE MIR 8 251 -11 375 89 0 0 chr9 28673251 28673307 -89189320 + (TCCA)n Simple_repeat Simple_repeat 1 56 0 231 357 63 16 chr9 28673400 28673526 -89189101 - L2 LINE L2 -223 3049 2918 623 122 70 0 chr9 28673601 28673716 -89188911 + L1MA8 LINE L1 5270 5392 -899 * 1933 132 12 35 chr9 28673706 28674048 -89188579 + L1MA8 LINE L1 5759 6092 -199 282 331 0 44 chr9 28674051 28674187 -89188440 + MER5A DNA MER1_type 55 184 -5 599 158 211 0 chr9 28674253 28674386 -89188241 - MER103 DNA DNA -1 165 5 393 229 0 12 chr9 28675375 28675458 -89187169 - L2 LINE L2 0 3313 3232 271 284 15 0 chr9 28675975 28676042 -89186585 - MER113 DNA MER1_type? 0 521 454 222 184 0 0 chr9 28677425 28677463 -89185164 + GA-rich Low_complexity Low_complexity 1 38 0 257 248 53 121 chr9 28677504 28677710 -89184917 + MLT1K LTR MaLR 392 583 -5 1160 164 34 29 chr9 28677783 28677991 -89184636 + MER3 DNA MER1_type 1 209 0 324 308 26 43 chr9 28678104 28678221 -89184406 - MIR3 SINE MIR -84 124 10 23 0 0 0 chr9 28679507 28679530 -89183097 + AT_rich Low_complexity Low_complexity 1 23 0 334 222 0 0 chr9 28679607 28679670 -89182957 + AluJb SINE Alu 183 245 -57 1178 171 9 32 chr9 28679670 28679887 -89182740 - AluJb SINE Alu -57 255 44 247 150 0 0 chr9 28679920 28679960 -89182667 - MIR SINE MIR -111 151 112 251 283 0 0 chr9 28680399 28680459 -89182168 - MER5A DNA MER1_type -126 63 4 297 216 0 0 chr9 28680478 28680529 -89182098 + MER5A DNA MER1_type 52 102 -87 198 0 0 0 chr9 28680951 28680973 -89181654 + (A)n Simple_repeat Simple_repeat 1 22 0 422 336 34 0 chr9 28681074 28681193 -89181434 - L2 LINE L2 -1 3271 3149 220 216 20 0 chr9 28681876 28681927 -89180700 + L2 LINE L2 3221 3272 0 440 250 63 28 chr9 28684326 28684472 -89178155 - MIR SINE MIR -68 140 34 354 240 55 115 chr9 28684638 28684753 -89177874 + MIR SINE MIR 25 125 -137 1931 156 17 3 chr9 28684753 28685054 -89177573 + AluJb SINE Alu 1 305 -7 354 240 55 115 chr9 28685054 28685138 -89177489 + MIR SINE MIR 125 212 -50 2987 82 0 0 chr9 28685712 28686067 -89176560 - THE1A LTR MaLR 0 355 1 12525 83 19 0 chr9 28686067 28687618 -89175009 - THE1A-int LTR MaLR 0 1580 1 2913 84 3 3 chr9 28687618 28687973 -89174654 - THE1A LTR MaLR 0 355 1 372 262 95 42 chr9 28688280 28688448 -89174179 + MIR SINE MIR 31 207 -55 300 381 101 0 chr9 28689649 28689788 -89172839 + L2 LINE L2 3107 3259 -13 840 141 7 7 chr9 28690206 28690341 -89172286 - AluJo SINE Alu -177 135 1 295 322 51 79 chr9 28690629 28690806 -89171821 - MIR3 SINE MIR -25 183 12 1501 171 29 44 chr9 28690878 28691010 -89171617 + AluJo SINE Alu 2 135 -177 180 0 0 0 chr9 28691010 28691030 -89171597 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1501 171 29 44 chr9 28691030 28691212 -89171415 + AluJo SINE Alu 135 311 -1 31 0 0 0 chr9 28691349 28691380 -89171247 + AT_rich Low_complexity Low_complexity 1 31 0 532 294 38 55 chr9 28692543 28692781 -89169846 + MIR SINE MIR 4 237 -25 243 0 0 0 chr9 28693752 28693779 -89168848 + (A)n Simple_repeat Simple_repeat 1 27 0 720 165 41 17 chr9 28694921 28695197 -89167430 + MLT1A1 LTR MaLR 36 365 0 326 310 122 13 chr9 28695849 28695958 -89166669 + L1ME4a LINE L1 5563 5659 -462 1891 220 97 36 chr9 28695958 28696516 -89166111 + MLT1E LTR MaLR 2 593 0 326 310 122 13 chr9 28696516 28696709 -89165918 + L1ME4a LINE L1 5659 5898 -223 1179 277 32 19 chr9 28696875 28697254 -89165373 + L2 LINE L2 2552 2935 -379 2482 181 11 19 chr9 28697254 28697719 -89164908 - MLT1C LTR MaLR 0 467 7 236 196 0 0 chr9 28697729 28697775 -89164852 + L2 LINE L2 2933 2978 -335 981 320 24 11 chr9 28697775 28698147 -89164480 + LTR16B LTR ERVL 1 377 -87 562 229 41 8 chr9 28698154 28698276 -89164351 + MER45A DNA AcHobo 33 158 -20 367 218 0 35 chr9 28698276 28698363 -89164264 + LTR16B LTR ERVL 380 463 -1 881 260 88 22 chr9 28698363 28698682 -89163945 + L2 LINE L2 2974 3313 0 562 285 65 39 chr9 28698806 28699876 -89162751 + L1MEd LINE L1 232 1342 -4863 387 0 0 0 chr9 28699883 28699926 -89162701 + (CA)n Simple_repeat Simple_repeat 2 44 0 380 335 28 14 chr9 28699931 28700146 -89162481 + HAL1 LINE L1 1406 1623 -884 1825 165 73 52 chr9 28700146 28700527 -89162100 - MSTD LTR MaLR 0 396 8 1639 169 0 15 chr9 28700882 28701148 -89161479 + AluJo SINE Alu 37 298 -14 1761 95 88 33 chr9 28701229 28701375 -89161252 - AluSc SINE Alu -16 293 156 2469 67 0 3 chr9 28701375 28701672 -89160955 - AluY SINE Alu -15 296 1 1761 95 88 33 chr9 28701672 28701798 -89160829 - AluSc SINE Alu -153 156 6 232 352 38 23 chr9 28702126 28702390 -89160237 + L1MEd LINE L1 2023 2290 -4106 282 243 29 0 chr9 28702391 28702461 -89160166 - Charlie8 DNA MER1_type -4 2413 2342 * 383 303 68 68 chr9 28702455 28702578 -89160049 - Charlie8 DNA MER1_type -2093 324 202 2571 56 0 25 chr9 28702578 28702897 -89159730 - AluY SINE Alu 0 311 1 383 303 68 68 chr9 28702897 28703037 -89159590 - Charlie8 DNA MER1_type -2214 203 61 2646 52 0 0 chr9 28704198 28704504 -89158123 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 28704561 28704582 -89158045 + AT_rich Low_complexity Low_complexity 1 21 0 606 158 135 8 chr9 28706239 28706372 -89156255 - MIR SINE MIR -56 206 57 235 279 189 49 chr9 28706378 28706500 -89156127 - MIR3 SINE MIR -63 145 7 546 271 131 54 chr9 28707013 28707364 -89155263 - L2 LINE L2 -4 3309 2932 2037 144 0 0 chr9 28707921 28708240 -89154387 + AluSx SINE Alu 1 319 0 432 248 8 32 chr9 28708290 28708415 -89154212 + LTR40a LTR ERVL 79 200 -319 767 236 44 35 chr9 28708470 28708673 -89153954 + LTR40a LTR ERVL 197 401 -118 2213 124 0 0 chr9 28709473 28709780 -89152847 - AluSx SINE Alu -5 307 1 222 275 100 0 chr9 28711197 28711277 -89151350 - MIR3 SINE MIR -6 202 115 668 309 50 89 chr9 28711281 28711741 -89150886 - L2 LINE L2 -5 3267 2826 251 310 40 20 chr9 28711726 28711826 -89150801 - MIR SINE MIR -86 122 21 * 2417 77 3 0 chr9 28712664 28712964 -89149663 + AluY SINE Alu 1 301 -10 487 280 68 38 chr9 28713893 28714129 -89148498 + MIR SINE MIR 20 262 0 330 107 0 36 chr9 28714205 28714261 -89148366 - AluSg SINE Alu 0 302 249 9253 57 2 8 chr9 28714261 28714430 -89148197 + MER11C LTR ERVK 1 170 -901 2354 82 0 3 chr9 28714430 28714724 -89147903 + AluY SINE Alu 1 293 -18 9253 57 2 8 chr9 28714724 28715632 -89146995 + MER11C LTR ERVK 170 1071 0 1948 107 0 0 chr9 28715632 28715884 -89146743 - AluSg SINE Alu -58 252 1 294 263 281 0 chr9 28715961 28716075 -89146552 - MER5A DNA MER1_type -35 154 9 1732 170 7 7 chr9 28716119 28716456 -89146171 + AluJb SINE Alu 1 337 0 192 266 172 0 chr9 28716547 28716611 -89146016 + L2 LINE L2 3104 3178 -94 286 273 125 39 chr9 28718283 28718594 -89144033 + L1ME4a LINE L1 5612 5949 -172 301 245 91 42 chr9 28718596 28718739 -89143888 + L1ME4a LINE L1 5972 6121 0 587 311 54 5 chr9 28719788 28720010 -89142617 - Charlie8 DNA MER1_type -2166 251 19 6390 59 1 3 chr9 28721425 28722735 -89139892 + L1PA6 LINE L1 4747 6055 -99 836 126 0 0 chr9 28722735 28722854 -89139773 + AluSg/x SINE Alu 178 296 -14 367 230 0 11 chr9 28723726 28723813 -89138814 - MER117 DNA MER1_type -106 91 6 804 293 99 28 chr9 28724759 28725151 -89137476 + LTR16A LTR ERVL 23 442 -8 1084 188 104 21 chr9 28725362 28725602 -89137025 + Tigger6 DNA MER2_type 4 263 -820 2316 185 135 0 chr9 28725809 28726252 -89136375 - MLT1D LTR MaLR -2 503 1 613 234 15 0 chr9 28726487 28726624 -89136003 - MER103 DNA DNA -15 151 13 221 316 41 31 chr9 28727251 28727349 -89135278 - L3 LINE CR1 -4 1573 1475 254 256 0 70 chr9 28727523 28727609 -89135018 - MIR SINE MIR -1 261 182 2402 64 3 3 chr9 28727609 28727904 -89134723 - AluY SINE Alu -16 295 1 1052 92 0 0 chr9 28727922 28728053 -89134574 - AluSg1 SINE Alu -178 131 1 373 273 117 42 chr9 28728150 28728334 -89134293 - MIR SINE MIR -26 236 42 271 271 29 0 chr9 28728796 28728866 -89133761 + L2 LINE L2 3240 3311 -2 21 57 0 0 chr9 28729648 28729683 -89132944 + AT_rich Low_complexity Low_complexity 1 35 0 196 243 257 0 chr9 28729885 28729959 -89132668 - MIR SINE MIR -76 132 40 253 169 15 15 chr9 28730340 28730405 -89132222 + GA-rich Low_complexity Low_complexity 4 68 0 2163 129 0 0 chr9 28730483 28730786 -89131841 - AluSx SINE Alu -9 303 1 2234 101 3 16 chr9 28730788 28731094 -89131533 - AluSx SINE Alu -10 302 1 259 289 61 18 chr9 28732384 28732498 -89130129 + MIR SINE MIR 83 201 -61 939 262 62 39 chr9 28732938 28733354 -89129273 + MLT1J2 LTR MaLR 6 431 -19 22 0 0 0 chr9 28733401 28733423 -89129204 + AT_rich Low_complexity Low_complexity 1 22 0 792 320 69 13 chr9 28734327 28734809 -89127818 + L2 LINE L2 2554 3066 -247 545 94 12 0 chr9 28734932 28735017 -89127610 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 207 0 0 0 chr9 28735414 28735437 -89127190 + (A)n Simple_repeat Simple_repeat 1 23 0 474 290 93 23 chr9 28736439 28736653 -89125974 + MIR SINE MIR 34 262 0 1506 228 43 39 chr9 28736885 28737350 -89125277 + MLT1C LTR MaLR 1 467 0 500 339 74 41 chr9 28737734 28738247 -89124380 + L2 LINE L2 2079 2608 -706 231 333 0 0 chr9 28738291 28738351 -89124276 + L2 LINE L2 3174 3233 -39 2466 79 13 0 chr9 28738439 28738742 -89123885 + AluSx SINE Alu 1 307 -5 276 291 152 0 chr9 28738818 28738897 -89123730 - L2 LINE L2 0 3272 3182 344 172 0 0 chr9 28740286 28740344 -89122283 - L2 LINE L2 0 3313 3256 187 355 72 26 chr9 28740612 28740764 -89121863 - L2 LINE L2 -75 3197 3039 472 126 137 0 chr9 28741904 28741999 -89120628 + MER53 DNA DNA 1 108 -81 189 0 0 0 chr9 28742757 28742778 -89119849 + (TG)n Simple_repeat Simple_repeat 2 22 0 2333 93 0 3 chr9 28743029 28743339 -89119288 + AluSc SINE Alu 1 309 0 24 0 0 0 chr9 28743397 28743421 -89119206 + AT_rich Low_complexity Low_complexity 1 24 0 264 100 0 0 chr9 28743489 28743529 -89119098 + (TA)n Simple_repeat Simple_repeat 2 41 0 550 305 110 8 chr9 28743530 28743903 -89118724 - L1ME4a LINE L1 -193 5928 5511 26 0 0 0 chr9 28743977 28744003 -89118624 + AT_rich Low_complexity Low_complexity 1 26 0 246 62 0 0 chr9 28744533 28744565 -89118062 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 213 39 0 0 chr9 28745017 28745043 -89117584 + (TGAG)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr9 28745219 28745240 -89117387 + (A)n Simple_repeat Simple_repeat 1 21 0 301 239 0 15 chr9 28746630 28746697 -89115930 + L3 LINE CR1 1510 1575 -2 319 296 100 29 chr9 28747789 28748100 -89114527 + L1ME4a LINE L1 5329 5661 -460 291 243 64 81 chr9 28751220 28751419 -89111208 + MIR SINE MIR 12 212 -50 381 242 158 8 chr9 28751982 28752102 -89110525 + MIR SINE MIR 105 242 -20 208 138 0 35 chr9 28753034 28753092 -89109535 + (TA)n Simple_repeat Simple_repeat 1 56 0 610 110 55 0 chr9 28753578 28753669 -89108958 + FRAM SINE Alu 69 164 -12 279 268 24 0 chr9 28754803 28754885 -89107742 + CT-rich Low_complexity Low_complexity 4 87 0 306 148 0 0 chr9 28755671 28755725 -89106902 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 334 179 0 113 chr9 28756130 28756236 -89106391 + MLT1F1 LTR MaLR 474 567 0 232 159 0 23 chr9 28756259 28756303 -89106324 + MIR SINE MIR 212 254 -8 292 234 102 91 chr9 28756333 28756607 -89106020 + L1ME4a LINE L1 5744 6020 -101 506 246 47 23 chr9 28757381 28757552 -89105075 + MLT1K LTR MaLR 397 571 -17 21 0 0 0 chr9 28757725 28757746 -89104881 + AT_rich Low_complexity Low_complexity 1 21 0 474 293 23 8 chr9 28757871 28758004 -89104623 - MIR SINE MIR -6 256 122 390 241 85 47 chr9 28758381 28758593 -89104034 + LTR16C LTR ERVL 266 485 -6 36 40 0 0 chr9 28758794 28758844 -89103783 + AT_rich Low_complexity Low_complexity 1 50 0 694 231 63 80 chr9 28759111 28759142 -89103485 - MLT1I LTR MaLR -18 391 361 2102 189 110 23 chr9 28759142 28759613 -89103014 + MLT2B2 LTR ERVL 1 512 -3 694 231 63 80 chr9 28759613 28759880 -89102747 - MLT1I LTR MaLR -48 361 98 392 231 224 8 chr9 28759971 28760105 -89102522 + MIR SINE MIR 91 253 -9 217 385 42 30 chr9 28760115 28760281 -89102346 - L3b LINE CR1 -311 1272 1105 520 264 90 14 chr9 28761799 28761943 -89100684 - L2 LINE L2 0 3272 3118 277 195 230 11 chr9 28762017 28762104 -89100523 - L2 LINE L2 -8 3305 3200 345 325 109 39 chr9 28762128 28762410 -89100217 - L2 LINE L2 -216 3056 2732 2430 68 0 0 chr9 28762410 28762702 -89099925 - AluY SINE Alu -19 292 1 345 325 109 39 chr9 28762702 28762902 -89099725 - L2 LINE L2 -540 2732 2547 909 274 9 14 chr9 28763174 28763397 -89099230 - MIR SINE MIR -8 254 33 22 0 0 0 chr9 28764173 28764195 -89098432 + AT_rich Low_complexity Low_complexity 1 22 0 405 294 119 0 chr9 28764202 28764328 -89098299 - L2 LINE L2 -3 3269 3129 246 319 109 14 chr9 28764407 28764545 -89098082 - L2 LINE L2 -523 2791 2641 2364 214 35 24 chr9 28764673 28764992 -89097635 - L1MEc LINE L1 -3286 2929 2615 2245 60 53 3 chr9 28764992 28765276 -89097351 + AluY SINE Alu 1 298 -13 2364 214 35 24 chr9 28765276 28765635 -89096992 - L1MEc LINE L1 -3600 2615 2243 1608 132 42 100 chr9 28765640 28766050 -89096577 - L1MA8 LINE L1 -3 6288 5903 233 167 0 0 chr9 28766049 28766097 -89096530 - L1MEc LINE L1 -4094 2302 2255 * 465 187 98 0 chr9 28766087 28766499 -89096128 + L1MEc LINE L1 1833 2318 -4078 259 228 281 24 chr9 28766499 28766666 -89095961 - MIR SINE MIR -13 249 40 507 244 96 0 chr9 28766783 28766918 -89095709 + MIR SINE MIR 43 190 -72 35 83 0 0 chr9 28767321 28767405 -89095222 + AT_rich Low_complexity Low_complexity 1 84 0 23 0 0 0 chr9 28768049 28768072 -89094555 + AT_rich Low_complexity Low_complexity 1 23 0 231 36 0 0 chr9 28769503 28769531 -89093096 + (A)n Simple_repeat Simple_repeat 1 28 0 2266 100 3 0 chr9 28769915 28770206 -89092421 - AluSc SINE Alu -15 294 3 31 26 0 0 chr9 28771055 28771093 -89091534 + AT_rich Low_complexity Low_complexity 1 38 0 340 233 27 33 chr9 28771190 28771340 -89091287 + (TA)n Simple_repeat Simple_repeat 1 149 0 207 229 0 0 chr9 28772394 28772429 -89090198 + L2 LINE L2 3211 3245 -27 4172 181 48 24 chr9 28772889 28773418 -89089209 - L1P LINE L1 -1638 4508 3945 1845 162 0 26 chr9 28773418 28773720 -89088907 - AluJb SINE Alu -18 294 1 4172 181 48 24 chr9 28773720 28774125 -89088502 - L1P LINE L1 -2201 3945 3551 5156 110 81 1 chr9 28774125 28775714 -89086913 + L1PA15 LINE L1 4483 6162 -3 24 32 0 0 chr9 28775752 28775783 -89086844 + AT_rich Low_complexity Low_complexity 1 31 0 186 194 28 0 chr9 28776579 28776615 -89086012 - L2 LINE L2 -16 3256 3220 1623 181 10 17 chr9 28776623 28776922 -89085705 - AluJo SINE Alu -10 302 6 22 0 0 0 chr9 28777110 28777132 -89085495 + AT_rich Low_complexity Low_complexity 1 22 0 333 303 92 9 chr9 28777287 28777396 -89085231 + L2 LINE L2 3151 3268 -4 435 317 104 5 chr9 28777939 28778333 -89084294 + L1ME4a LINE L1 5616 6048 -73 21 0 0 0 chr9 28778870 28778891 -89083736 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr9 28779093 28779155 -89083472 + AT_rich Low_complexity Low_complexity 1 62 0 396 174 188 49 chr9 28779845 28779989 -89082638 + MER103 DNA DNA 3 166 0 297 289 0 0 chr9 28781614 28781690 -89080937 - MIR SINE MIR -46 162 86 244 275 43 0 chr9 28781928 28781997 -89080630 + MIR SINE MIR 188 259 -3 847 234 106 18 chr9 28782037 28782263 -89080364 - MIR SINE MIR -15 247 2 23 54 0 0 chr9 28783356 28783393 -89079234 + AT_rich Low_complexity Low_complexity 1 37 0 1681 128 8 0 chr9 28783724 28783967 -89078660 - AluSq SINE Alu 0 313 69 207 0 0 0 chr9 28785220 28785243 -89077384 + (A)n Simple_repeat Simple_repeat 1 23 0 227 307 79 40 chr9 28787249 28787350 -89075277 - MIR3 SINE MIR -19 189 85 195 128 51 26 chr9 28788375 28788414 -89074213 + L2 LINE L2 3227 3266 -6 1732 176 79 29 chr9 28788667 28789110 -89073517 + MLT1C LTR MaLR 3 467 0 189 0 0 0 chr9 28789150 28789171 -89073456 + (A)n Simple_repeat Simple_repeat 1 21 0 5188 129 85 18 chr9 28789633 28790734 -89071893 + Tigger3b DNA MER2_type 1 1198 -33 2024 101 7 23 chr9 28791647 28791981 -89070646 + AluSx SINE Alu 1 312 0 1764 167 14 0 chr9 28792526 28792807 -89069820 - AluJo SINE Alu -17 295 11 234 0 0 0 chr9 28794274 28794300 -89068327 + (CCG)n Simple_repeat Simple_repeat 1 26 0 326 197 15 53 chr9 28794480 28794612 -89068015 + C-rich Low_complexity Low_complexity 3 129 0 190 244 0 0 chr9 28795126 28795171 -89067456 + L2 LINE L2 3264 3308 -5 2193 177 42 11 chr9 28795738 28796185 -89066442 + MER65C LTR ERV1 1 461 0 458 236 109 6 chr9 28796235 28796400 -89066227 + L1MA9 LINE L1 5917 6098 -214 2068 149 83 5 chr9 28796400 28796797 -89065830 - MSTA LTR MaLR 0 428 1 4740 186 35 12 chr9 28796803 28797618 -89065009 - MSTA-int LTR MaLR -6 1645 803 3696 185 37 4 chr9 28797618 28798327 -89064300 - MER50 LTR ERV1 -2 732 1 4740 186 35 12 chr9 28798327 28798483 -89064144 - MSTA-int LTR MaLR -848 803 652 5054 25 3 0 chr9 28798485 28799139 -89063488 + L1PA3 LINE L1 5519 6174 0 3499 164 31 0 chr9 28799149 28799783 -89062844 - MSTA-int LTR MaLR -997 654 1 2527 118 51 17 chr9 28799783 28800197 -89062430 - MSTA LTR MaLR 0 428 1 734 189 55 0 chr9 28800198 28800362 -89062265 + L1MA9 LINE L1 6103 6275 -37 323 244 25 109 chr9 28800373 28800492 -89062135 - MIR SINE MIR -72 190 82 604 281 67 14 chr9 28801396 28801606 -89061021 + MIR SINE MIR 2 222 -40 2215 102 37 0 chr9 28801970 28802264 -89060363 - AluSp SINE Alu -6 307 3 1990 136 30 13 chr9 28802549 28802851 -89059776 + AluSx SINE Alu 1 307 -5 304 311 84 21 chr9 28803799 28804107 -89058520 + L2 LINE L2 2709 3068 -204 595 280 165 9 chr9 28804254 28804472 -89058155 + MIR SINE MIR 11 262 0 181 195 24 0 chr9 28804474 28804515 -89058112 + L2 LINE L2 3272 3313 0 315 309 41 0 chr9 28804517 28804614 -89058013 - MIR SINE MIR -55 153 53 282 333 39 31 chr9 28804669 28804798 -89057829 + L2 LINE L2 3127 3256 -16 22 56 0 0 chr9 28805880 28805916 -89056711 + AT_rich Low_complexity Low_complexity 1 36 0 1972 141 7 20 chr9 28806397 28806694 -89055933 - AluSx SINE Alu -12 300 8 2168 177 2 8 chr9 28807709 28808105 -89054522 + MER57A LTR ERV1 1 394 -9 1762 126 21 37 chr9 28808111 28808436 -89054191 - L1MA3 LINE L1 -8 6297 5978 1467 125 12 0 chr9 28808436 28808734 -89053893 + L1M1 LINE L1 5211 5511 -743 180 260 80 0 chr9 28808976 28809026 -89053601 + L2 LINE L2 3208 3261 -11 35 88 0 0 chr9 28809117 28809208 -89053419 + AT_rich Low_complexity Low_complexity 1 91 0 969 258 75 73 chr9 28809260 28809462 -89053165 - L1MC4a LINE L1 -1773 6035 5835 2233 44 34 27 chr9 28809462 28809756 -89052871 - AluY SINE Alu -15 296 1 969 258 75 73 chr9 28809756 28810211 -89052416 - L1MC4a LINE L1 -1973 5835 5377 726 310 20 27 chr9 28810220 28810627 -89052000 + L1PA16 LINE L1 10 413 -7168 13038 224 39 10 chr9 28811177 28816400 -89046227 + L1PA16 LINE L1 2224 7588 -16 200 216 69 147 chr9 28816534 28816636 -89045991 + L2 LINE L2 3165 3258 -55 * 222 313 47 31 chr9 28816635 28816763 -89045864 - L2 LINE L2 -820 2494 2365 1938 168 93 20 chr9 28816776 28817228 -89045399 + MER52A LTR ERV1 1271 1755 0 1292 195 200 26 chr9 28817303 28817733 -89044894 - MLT1D LTR MaLR 0 505 1 649 227 38 76 chr9 28818563 28818801 -89043826 - L1ME3A LINE L1 -18 6152 5924 452 224 0 22 chr9 28819797 28819931 -89042696 + L1MA9 LINE L1 6157 6287 -25 768 87 9 9 chr9 28819945 28820060 -89042567 - AluSg/x SINE Alu -2 308 194 340 184 37 18 chr9 28820561 28820670 -89041957 + MER113 DNA MER1_type? 90 200 -321 413 339 0 8 chr9 28820690 28820817 -89041810 + MIR3 SINE MIR 8 133 -75 216 0 0 0 chr9 28820817 28820841 -89041786 + (A)n Simple_repeat Simple_repeat 1 24 0 248 268 12 0 chr9 28820951 28821033 -89041594 + MER117 DNA MER1_type 6 88 -109 599 186 215 0 chr9 28823039 28823296 -89039331 - MER33 DNA MER1_type -4 359 6 1409 234 45 28 chr9 28824146 28824608 -89038019 + LTR38 LTR ERV1 87 556 0 28 29 0 0 chr9 28824864 28824899 -89037728 + AT_rich Low_complexity Low_complexity 1 35 0 447 231 60 0 chr9 28825547 28825681 -89036946 + MER5C DNA MER1_type 128 269 -55 358 331 49 22 chr9 28825986 28826170 -89036457 + MER5A DNA MER1_type 1 189 0 449 291 120 20 chr9 28826444 28826743 -89035884 - MLT1J2 LTR MaLR -121 329 1 2468 57 3 0 chr9 28828140 28828439 -89034188 - AluY SINE Alu -11 300 1 241 270 54 34 chr9 28828880 28829028 -89033599 + L1ME LINE L1 5648 5798 -323 25 51 0 0 chr9 28829040 28829079 -89033548 + AT_rich Low_complexity Low_complexity 1 39 0 2203 104 0 0 chr9 28832032 28832320 -89030307 - L1PA7 LINE L1 -6 6148 5861 20895 119 20 87 chr9 28832320 28836433 -89026194 - L1P LINE L1 -2298 3848 12 1599 142 22 18 chr9 28836447 28836721 -89025906 - AluJb SINE Alu -13 299 25 21 36 0 0 chr9 28836743 28836771 -89025856 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 28837193 28837214 -89025413 + AT_rich Low_complexity Low_complexity 1 21 0 195 298 77 58 chr9 28838016 28838120 -89024507 - L2 LINE L2 0 3313 3208 465 285 69 0 chr9 28838270 28838414 -89024213 - L2 LINE L2 0 3272 3119 1358 199 17 14 chr9 28838456 28838747 -89023880 - MLT1C LTR MaLR 0 467 176 21 36 0 0 chr9 28840491 28840519 -89022108 + AT_rich Low_complexity Low_complexity 1 28 0 568 261 153 0 chr9 28841177 28841334 -89021293 + MER5A DNA MER1_type 9 189 0 1062 279 46 61 chr9 28841961 28842021 -89020606 + L1ME LINE L1 5152 5211 -910 2356 53 0 0 chr9 28842021 28842329 -89020298 + AluY SINE Alu 1 308 0 1062 279 46 61 chr9 28842329 28842934 -89019693 + L1ME LINE L1 5211 5808 -313 2365 74 0 19 chr9 28842943 28843254 -89019373 + AluY SINE Alu 1 305 -6 214 182 65 13 chr9 28843329 28843406 -89019221 + (TA)n Simple_repeat Simple_repeat 2 82 0 269 185 15 0 chr9 28843490 28843555 -89019072 + (TA)n Simple_repeat Simple_repeat 1 66 0 626 191 229 16 chr9 28844050 28844233 -89018394 - L1ME LINE L1 -583 5583 5362 1022 209 57 29 chr9 28844251 28844566 -89018061 + L1ME LINE L1 5026 5349 -797 5302 209 31 45 chr9 28845490 28845872 -89016755 - Zaphod DNA AcHobo -2680 1351 965 1611 180 119 67 chr9 28845872 28846350 -89016277 + MLT1D LTR MaLR 1 503 -2 5302 209 31 45 chr9 28846350 28847337 -89015290 - Zaphod DNA AcHobo -3066 965 1 23 0 0 0 chr9 28848656 28848679 -89013948 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr9 28848705 28848727 -89013900 + (A)n Simple_repeat Simple_repeat 1 22 0 205 350 12 12 chr9 28849075 28849155 -89013472 - MER5A DNA MER1_type -64 125 46 * 367 291 10 10 chr9 28849085 28849188 -89013439 + MER5B DNA MER1_type 75 177 -1 1161 181 37 19 chr9 28849202 28849417 -89013210 + MER20 DNA MER1_type 1 219 0 1757 134 40 118 chr9 28849444 28849892 -89012735 + L1MA3 LINE L1 5893 6305 0 709 196 15 103 chr9 28850751 28850955 -89011672 + MER53 DNA DNA 4 189 0 1045 247 208 28 chr9 28851904 28852684 -89009943 - L2 LINE L2 -28 3285 2376 991 252 87 29 chr9 28852760 28853003 -89009624 - L1MC4 LINE L1 -143 7899 7633 2143 96 23 13 chr9 28853003 28853304 -89009323 - AluSx SINE Alu -7 305 2 991 252 87 29 chr9 28853304 28853370 -89009257 - L1MC4 LINE L1 -409 7633 7572 1865 215 60 77 chr9 28853374 28853423 -89009204 - MLT1E LTR MaLR -4 589 541 333 47 0 0 chr9 28853423 28853466 -89009161 + (CA)n Simple_repeat Simple_repeat 2 44 0 1865 215 60 77 chr9 28853466 28853951 -89008676 - MLT1E LTR MaLR -52 541 64 1075 231 81 19 chr9 28854031 28854875 -89007752 - L1MC4 LINE L1 -502 7540 6479 866 202 26 47 chr9 28856136 28856329 -89006298 + MER5A DNA MER1_type 1 189 0 2449 78 0 0 chr9 28856691 28856999 -89005628 - AluY SINE Alu -3 308 1 2578 113 80 28 chr9 28857069 28857492 -89005135 + MER65A LTR ERV1 1 445 0 3489 90 0 26 chr9 28858176 28858632 -89003995 + MLT2A1 LTR ERVL 1 444 0 45422 69 8 1 chr9 28858632 28864247 -88998380 + HERVL-A1 LTR ERVL 1 5654 0 3233 62 5 2 chr9 28864249 28864649 -88997978 + MLT2A1 LTR ERVL 3 403 -41 233 245 0 0 chr9 28864667 28864720 -88997907 + (TA)n Simple_repeat Simple_repeat 2 54 0 233 59 0 0 chr9 28864725 28864759 -88997868 + MLT2A1 LTR ERVL 370 403 -41 203 283 22 22 chr9 28864776 28864868 -88997759 + (CATATA)n Simple_repeat Simple_repeat 1 92 0 363 92 0 172 chr9 28864868 28864955 -88997672 + MLT2A2 LTR ERVL 382 453 0 24236 147 9 24 chr9 28865933 28868943 -88993684 + L1P3 LINE L1 3 2967 -3494 2084 97 4 0 chr9 28868943 28869212 -88993415 - AluY SINE Alu -41 270 1 24236 147 9 24 chr9 28869212 28871518 -88991109 + L1P3 LINE L1 2967 5305 -1156 6823 89 1 2 chr9 28871518 28872771 -88989856 + L1PA8A LINE L1 4878 6131 0 850 172 0 8 chr9 28873457 28873591 -88989036 + FLAM_C SINE Alu 1 133 0 7888 126 25 18 chr9 28873623 28874846 -88987781 + Tigger3b DNA MER2_type 1 1231 0 21 57 0 0 chr9 28874934 28874969 -88987658 + AT_rich Low_complexity Low_complexity 1 35 0 2143 229 28 20 chr9 28875055 28875591 -88987036 - L1ME1 LINE L1 -9 6157 5618 4353 124 46 88 chr9 28875781 28876600 -88986027 + LTR1 LTR ERV1 1 785 0 2326 65 17 3 chr9 28877067 28877361 -88985266 + AluY SINE Alu 1 298 -13 2267 84 3 0 chr9 28879569 28879876 -88982751 - AluSp SINE Alu 0 308 1 723 320 70 17 chr9 28880454 28880938 -88981689 + L2 LINE L2 2554 3066 -247 384 103 0 0 chr9 28881061 28881119 -88981508 + (TGGA)n Simple_repeat Simple_repeat 3 60 0 2161 180 52 76 chr9 28881363 28881608 -88981019 + MLT1E2 LTR MaLR 62 311 -315 391 181 12 24 chr9 28881608 28881691 -88980936 + L1PB4 LINE L1 6073 6154 -2 2161 180 52 76 chr9 28881691 28881945 -88980682 + MLT1E2 LTR MaLR 311 548 -78 1236 126 111 0 chr9 28881945 28882152 -88980475 - MER30 DNA MER1_type 0 230 1 2161 180 52 76 chr9 28882152 28882229 -88980398 + MLT1E2 LTR MaLR 548 625 -1 24 53 0 0 chr9 28882542 28882580 -88980047 + AT_rich Low_complexity Low_complexity 1 38 0 445 275 23 30 chr9 28883184 28883315 -88979312 + MIR SINE MIR 31 160 -102 212 357 124 25 chr9 28884273 28884757 -88977870 + L2 LINE L2 2445 2976 -338 1744 166 0 33 chr9 28884903 28885204 -88977423 - AluJo SINE Alu -21 291 1 1719 123 0 16 chr9 28885316 28885559 -88977068 - AluSc SINE Alu -1 308 70 349 267 113 104 chr9 28885762 28886242 -88976385 + L2 LINE L2 2824 3307 -6 2049 186 49 72 chr9 28886593 28887202 -88975425 + LTR9 LTR ERV1 18 612 0 1586 205 42 13 chr9 28887256 28887641 -88974986 - L1MD3 LINE L1 -813 7182 6787 231 280 0 0 chr9 28887634 28887684 -88974943 - L1MC3 LINE L1 -1058 6727 6678 * 616 235 11 21 chr9 28887684 28887871 -88974756 - L1MC4a LINE L1 -1276 6532 6348 10486 154 53 52 chr9 28888085 28890500 -88972127 - Tigger1 DNA MER2_type 0 2418 1 661 227 83 61 chr9 28890945 28891223 -88971404 + MARNA DNA Mariner 143 426 -160 526 185 84 8 chr9 28891308 28891427 -88971200 + FLAM_C SINE Alu 1 128 -15 192 286 52 13 chr9 28891812 28891889 -88970738 + MIR SINE MIR 177 256 -6 185 128 0 26 chr9 28892296 28892335 -88970292 + (CATG)n Simple_repeat Simple_repeat 1 38 0 524 301 54 16 chr9 28893447 28893633 -88968994 - MIR SINE MIR -19 243 51 2093 150 0 0 chr9 28893927 28894233 -88968394 - AluSx SINE Alu -6 306 1 185 284 157 10 chr9 28894448 28894550 -88968077 + MIR SINE MIR 17 133 -75 204 317 12 12 chr9 28895636 28895718 -88966909 + CT-rich Low_complexity Low_complexity 2 83 0 189 0 0 0 chr9 28896278 28896299 -88966328 + (T)n Simple_repeat Simple_repeat 1 21 0 438 307 87 15 chr9 28896386 28896572 -88966055 + MIR SINE MIR 1 198 -64 464 117 13 0 chr9 28896717 28896794 -88965833 - MER51C LTR ERV1 -2 638 561 221 342 13 13 chr9 28898565 28898644 -88963983 + L2 LINE L2 3187 3265 -7 424 239 83 0 chr9 28899901 28900010 -88962617 - MIR SINE MIR -73 189 72 298 243 15 0 chr9 28900045 28900148 -88962479 - MLT2E LTR ERVL 0 663 532 27 29 0 0 chr9 28900160 28900194 -88962433 + AT_rich Low_complexity Low_complexity 1 34 0 198 103 0 0 chr9 28900430 28900459 -88962168 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 185 343 0 14 chr9 28900946 28901016 -88961611 - MIR3 SINE MIR -41 167 99 24 0 0 0 chr9 28901028 28901052 -88961575 + AT_rich Low_complexity Low_complexity 1 24 0 201 326 32 11 chr9 28902375 28902470 -88960157 + MIR SINE MIR 117 213 -49 791 292 42 4 chr9 28904213 28904453 -88958174 + MIR SINE MIR 13 261 -1 2342 57 3 3 chr9 28904559 28904857 -88957770 - AluY SINE Alu -13 298 1 317 320 29 0 chr9 28904982 28905085 -88957542 + MIR SINE MIR 46 151 -111 390 203 47 42 chr9 28905487 28905629 -88956998 + LTR45B LTR ERV1 324 503 -22 9540 195 43 12 chr9 28905629 28907509 -88955118 - L1M1 LINE L1 -671 5634 3656 2855 19 0 0 chr9 28907509 28907825 -88954802 - AluYb8 SINE Alu -2 316 1 9540 195 43 12 chr9 28907825 28908339 -88954288 - L1M1 LINE L1 -2649 3656 3159 183 233 0 23 chr9 28909505 28909548 -88953079 - MIR3 SINE MIR -29 179 138 410 267 78 37 chr9 28912233 28912424 -88950203 - MIR SINE MIR -44 218 20 486 322 191 23 chr9 28912517 28913004 -88949623 + L3 LINE CR1 999 1567 -10 591 246 0 0 chr9 28916314 28916428 -88946199 - MER81 DNA DNA 0 114 1 1844 100 20 7 chr9 28916708 28917065 -88945562 - MER51C LTR ERV1 -361 279 1 249 331 27 47 chr9 28917159 28917269 -88945358 - MIR SINE MIR -24 238 130 5208 68 134 4 chr9 28917269 28917999 -88944628 + LTR12 LTR ERV1 1 825 -1 249 331 27 47 chr9 28917999 28918036 -88944591 - MIR SINE MIR -132 130 94 458 315 81 55 chr9 28918483 28918721 -88943906 - MIR SINE MIR -20 242 6 524 291 90 33 chr9 28919283 28919527 -88943100 - MIR SINE MIR -4 258 1 264 278 157 0 chr9 28919672 28919780 -88942847 - MIR SINE MIR -87 175 51 246 330 93 0 chr9 28920075 28920172 -88942455 + MIR3 SINE MIR 94 199 -9 224 274 0 0 chr9 28920529 28920580 -88942047 + L2 LINE L2 2703 2753 -561 234 0 0 0 chr9 28920618 28920644 -88941983 + (T)n Simple_repeat Simple_repeat 1 26 0 670 107 83 0 chr9 28920878 28920999 -88941628 + L1MA9 LINE L1 6182 6312 0 2183 109 77 6 chr9 28921234 28921574 -88941053 + THE1B LTR MaLR 1 364 0 418 335 18 0 chr9 28921587 28921751 -88940876 - MER63A DNA MER1_type -1 209 43 6795 64 6 3 chr9 28921768 28923412 -88939215 - L1PA7 LINE L1 0 6154 4507 2481 68 21 6 chr9 28923420 28923756 -88938871 - L1PA7 LINE L1 -4 6150 5810 522 209 0 16 chr9 28923757 28923886 -88938741 - L1PA7 LINE L1 -1623 4523 4397 192 425 50 22 chr9 28924153 28924431 -88938196 - L2 LINE L2 -22 3250 2965 289 200 13 80 chr9 28924608 28924683 -88937944 - MER5A DNA MER1_type -111 78 9 4811 163 34 11 chr9 28924686 28925588 -88937039 - MER49 LTR ERV1 0 923 1 805 240 0 6 chr9 28926534 28926713 -88935914 - MER5B DNA MER1_type 0 178 1 303 299 120 8 chr9 28926963 28927080 -88935547 + MIR SINE MIR 62 191 -71 249 203 174 0 chr9 28928459 28928528 -88934099 - MLT1I LTR MaLR -12 397 317 387 215 84 9 chr9 28928634 28928741 -88933886 - MLT1I LTR MaLR -254 155 41 349 318 18 35 chr9 28930154 28930324 -88932303 + MIR SINE MIR 46 212 -50 336 235 154 72 chr9 28930685 28930991 -88931636 + MLT1H LTR MaLR 116 446 -103 446 308 30 15 chr9 28931767 28931900 -88930727 + L2 LINE L2 3138 3272 0 434 382 96 14 chr9 28931934 28932287 -88930340 - L3 LINE CR1 -183 1394 1013 235 162 27 27 chr9 28932342 28932416 -88930211 + (TATAA)n Simple_repeat Simple_repeat 3 76 0 324 257 20 88 chr9 28932444 28932592 -88930035 - MIR SINE MIR -66 196 59 413 333 131 22 chr9 28932808 28933075 -88929552 - L3 LINE CR1 -629 948 653 1153 140 0 91 chr9 28933346 28933567 -88929060 - AluJo SINE Alu -16 296 96 1829 166 3 10 chr9 28933754 28934049 -88928578 - AluJb SINE Alu -14 298 6 33803 40 32 2 chr9 28934465 28938896 -88923731 - L1P LINE L1 -1579 4567 2 445 340 25 10 chr9 28939083 28939283 -88923344 - MIR SINE MIR -58 204 2 816 190 22 5 chr9 28939559 28939743 -88922884 - MER53 DNA DNA -2 187 1 1451 220 67 73 chr9 28939916 28940393 -88922234 - MLT1E1 LTR MaLR -180 474 1 181 337 96 0 chr9 28941515 28941598 -88921029 - MER5A DNA MER1_type -92 97 7 230 371 36 0 chr9 28942351 28942491 -88920136 + L2 LINE L2 2168 2312 -1002 22 0 0 0 chr9 28944030 28944052 -88918575 + AT_rich Low_complexity Low_complexity 1 22 0 447 19 0 0 chr9 28944059 28944111 -88918516 + (CA)n Simple_repeat Simple_repeat 2 53 0 355 152 30 0 chr9 28944116 28944182 -88918445 + L1ME4a LINE L1 5979 6046 -75 21 0 0 0 chr9 28944220 28944241 -88918386 + AT_rich Low_complexity Low_complexity 1 21 0 422 200 36 27 chr9 28944394 28944504 -88918123 - L2 LINE L2 -1370 1944 1834 2209 110 0 25 chr9 28945114 28945433 -88917194 + AluSx SINE Alu 1 311 -1 405 263 63 46 chr9 28947001 28947176 -88915451 - MIR SINE MIR -45 217 40 295 245 274 0 chr9 28947272 28947378 -88915249 + MIR SINE MIR 119 253 -9 221 324 209 7 chr9 28948311 28948459 -88914168 - MIR SINE MIR -33 229 52 243 337 0 10 chr9 28948529 28948627 -88914000 + MIR SINE MIR 154 250 -12 26533 130 17 88 chr9 28950231 28956222 -88906405 - L1PA8A LINE L1 -599 5532 1 265 250 0 0 chr9 28956225 28956293 -88906334 + CT-rich Low_complexity Low_complexity 3 70 0 571 354 45 15 chr9 28956352 28956824 -88905803 + ERVL LTR ERVL 1909 2394 -3370 1235 226 24 0 chr9 28956884 28957181 -88905446 + L1MA4 LINE L1 5983 6286 -14 2770 181 16 27 chr9 28957439 28958064 -88904563 - L1MB8 LINE L1 0 6178 5561 2294 133 83 10 chr9 28958490 28958889 -88903738 + MSTA LTR MaLR 1 428 0 6873 200 32 1 chr9 28958889 28960321 -88902306 + MSTA-int LTR MaLR 1 1476 -175 1679 166 36 25 chr9 28960745 28961101 -88901526 + THE1C LTR MaLR 14 373 -2 295 316 61 0 chr9 28961494 28961608 -88901019 + Charlie8 DNA MER1_type 89 209 -2208 740 242 139 28 chr9 28961854 28962243 -88900384 + LTR16A1 LTR ERVL 20 451 -6 274 290 0 56 chr9 28962397 28962504 -88900123 + MER117 DNA MER1_type 1 101 -96 1881 229 64 22 chr9 28962548 28963081 -88899546 - MER74B LTR ERVL -67 555 1 260 340 10 29 chr9 28963184 28963287 -88899340 + L2 LINE L2 2995 3095 -177 373 209 90 81 chr9 28963337 28963548 -88899079 - L1ME1 LINE L1 -6 6160 5948 838 180 25 62 chr9 28963680 28963924 -88898703 - L1ME1 LINE L1 -168 5998 5764 248 274 24 65 chr9 28963958 28964082 -88898545 - MER74A LTR ERVL -56 502 384 351 109 18 0 chr9 28964136 28964191 -88898436 - L1ME LINE L1 -429 5735 5680 628 208 33 29 chr9 28964191 28964541 -88898086 + L1ME LINE L1 5190 5650 -516 2068 150 0 7 chr9 28964672 28964979 -88897648 + AluSx SINE Alu 1 305 -7 640 302 68 38 chr9 28964985 28965353 -88897274 + MER93a LTR ERV1 13 391 -11 13270 195 62 30 chr9 28965964 28968364 -88894263 - L1PA14 LINE L1 -134 7465 5144 252 0 0 0 chr9 28968364 28968392 -88894235 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 13270 195 62 30 chr9 28968392 28968953 -88893674 - L1PA14 LINE L1 -2455 5144 4602 2738 17 0 0 chr9 28968953 28969253 -88893374 - AluYa5 SINE Alu -11 300 1 13270 195 62 30 chr9 28969253 28970605 -88892022 - L1PA14 LINE L1 -2997 4602 3002 10665 137 16 15 chr9 28970609 28972874 -88889753 - L1PA14 LINE L1 -5029 2552 1 751 149 91 0 chr9 28974117 28974271 -88888356 + L1MA7 LINE L1 6089 6256 -35 257 89 22 0 chr9 28974371 28974416 -88888211 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 317 291 86 7 chr9 28974426 28974577 -88888050 + LTR50 LTR ERVL 2 164 -631 210 37 0 0 chr9 28974584 28974611 -88888016 + (CAA)n Simple_repeat Simple_repeat 1 27 0 316 236 68 26 chr9 28974970 28975152 -88887475 + LTR41 LTR ERVL 582 792 -3 418 277 62 23 chr9 28975154 28975284 -88887343 - L2 LINE L2 -12 3301 3167 231 179 0 0 chr9 28975688 28975727 -88886900 - MER5B DNA MER1_type -2 176 138 1407 198 59 53 chr9 28975747 28976105 -88886522 + MLT1A1 LTR MaLR 1 360 -5 562 219 0 0 chr9 28976108 28976213 -88886414 + MER5B DNA MER1_type 74 178 0 220 288 125 0 chr9 28977983 28978063 -88884564 + MIR SINE MIR 16 105 -103 432 346 65 30 chr9 28978083 28978314 -88884313 - L3 LINE CR1 -43 1534 1296 184 291 70 0 chr9 28978738 28978824 -88883803 + L2 LINE L2 3134 3225 -88 772 199 73 37 chr9 28979408 28979599 -88883028 - MER58A DNA MER1_type -26 198 1 645 242 143 0 chr9 28979607 28979768 -88882859 + MER5A DNA MER1_type 1 184 -5 210 298 0 18 chr9 28980617 28980674 -88881953 - L3 LINE CR1 -96 1481 1426 204 261 0 0 chr9 28980683 28980729 -88881898 + L2 LINE L2 3265 3310 -3 591 306 64 9 chr9 28980875 28981094 -88881533 - MIR SINE MIR -27 235 5 230 263 181 15 chr9 28982311 28982444 -88880183 - L2 LINE L2 0 3313 3159 197 211 26 0 chr9 28982672 28982710 -88879917 - L2 LINE L2 -15 3257 3219 451 307 109 33 chr9 28982929 28983232 -88879395 + MLT1I LTR MaLR 50 375 -34 215 380 65 0 chr9 28983391 28983499 -88879128 + L2 LINE L2 3158 3272 0 6604 83 6 2 chr9 28983733 28984100 -88878527 + L1PA10 LINE L1 4759 5123 -1045 2068 121 4 4 chr9 28984100 28984381 -88878246 + AluSp SINE Alu 1 281 -32 267 31 0 0 chr9 28984383 28984415 -88878212 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 6604 83 6 2 chr9 28984415 28985478 -88877149 + L1PA10 LINE L1 5123 6167 -1 182 337 33 43 chr9 28985929 28986021 -88876606 - L2 LINE L2 -2819 495 405 276 278 52 43 chr9 28987151 28987266 -88875361 + L2 LINE L2 3156 3271 -1 277 268 113 10 chr9 28987286 28987383 -88875244 - L2 LINE L2 -13 3259 3153 201 256 0 0 chr9 28987956 28987999 -88874628 + L2 LINE L2 3139 3181 -91 226 200 80 0 chr9 28988301 28988351 -88874276 - MER91C DNA MER1_type -47 93 40 202 347 67 0 chr9 28988584 28988659 -88873968 + L2 LINE L2 3188 3267 -5 396 256 200 0 chr9 28988835 28988960 -88873667 + MIR SINE MIR 20 169 -93 673 198 136 11 chr9 28989148 28989325 -88873302 - MER3 DNA MER1_type -1 208 10 315 240 202 0 chr9 28990441 28990570 -88872057 - L1ME4a LINE L1 0 6121 5967 253 241 321 0 chr9 28991584 28991696 -88870931 + MIR SINE MIR 59 206 -56 852 225 13 66 chr9 28991978 28992205 -88870422 - MER20 DNA MER1_type -4 215 1 309 278 202 17 chr9 28992933 28993106 -88869521 - MIR SINE MIR -8 254 50 405 280 88 8 chr9 28993456 28993581 -88869046 - L2 LINE L2 -6 3266 3132 560 313 61 19 chr9 28994649 28994959 -88867668 - MLT1I LTR MaLR -60 349 27 581 298 53 6 chr9 28994993 28995164 -88867463 + MIR SINE MIR 78 256 -6 343 314 0 0 chr9 28996640 28996742 -88865885 - MIR SINE MIR -74 188 87 246 189 0 0 chr9 28996761 28996808 -88865819 + MIR SINE MIR 104 151 -57 900 239 39 10 chr9 28996819 28997024 -88865603 - MER20 DNA MER1_type -4 215 5 4826 60 5 2 chr9 28997189 28997804 -88864823 + L1PA8 LINE L1 5542 6158 -14 183 337 24 36 chr9 28997805 28997888 -88864739 + MIR SINE MIR 148 229 -33 262 233 35 23 chr9 28999108 28999194 -88863433 + MER103 DNA DNA 62 148 -18 2157 191 56 34 chr9 28999815 29000371 -88862256 - LTR29 LTR ERV1 -54 568 1 4074 82 11 5 chr9 29000504 29001055 -88861572 + MER41A LTR ERV1 1 554 0 1134 281 42 17 chr9 29002872 29003274 -88859353 - LTR16B LTR ERVL 0 464 53 1226 310 69 30 chr9 29003410 29004016 -88858611 + L2 LINE L2 73 702 -2612 1675 268 76 107 chr9 29004025 29004723 -88857904 + L2 LINE L2 1481 2124 -1190 2269 104 0 13 chr9 29004723 29005022 -88857605 - AluSx SINE Alu -17 295 1 1675 268 76 107 chr9 29005022 29005619 -88857008 + L2 LINE L2 2124 2737 -577 627 95 9 35 chr9 29006406 29006522 -88856105 + MSTA-int LTR MaLR 1468 1580 0 1830 151 143 11 chr9 29006522 29006900 -88855727 + MSTA LTR MaLR 1 428 0 274 255 71 51 chr9 29007013 29007111 -88855516 + L2 LINE L2 3173 3272 0 1841 172 40 36 chr9 29007132 29007679 -88854948 + MLT2A2 LTR ERVL 1 552 -2 395 314 208 20 chr9 29007850 29008153 -88854474 + L3 LINE CR1 1213 1572 -5 24 67 0 0 chr9 29009386 29009431 -88853196 + AT_rich Low_complexity Low_complexity 1 45 0 1975 128 25 7 chr9 29010499 29010781 -88851846 + AluSc SINE Alu 1 287 -22 3765 112 102 0 chr9 29010835 29011469 -88851158 + L1P LINE L1 3943 4641 -1505 1047 81 0 0 chr9 29011472 29011621 -88851006 - L1PA8 LINE L1 -78 6094 5946 1160 220 20 57 chr9 29012730 29013084 -88849543 - MER58B DNA MER1_type 0 341 1 240 35 0 0 chr9 29013249 29013278 -88849349 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 248 248 139 20 chr9 29013859 29013960 -88848667 + L2 LINE L2 3193 3305 -8 28 48 0 0 chr9 29015143 29015185 -88847442 + AT_rich Low_complexity Low_complexity 1 42 0 397 214 97 10 chr9 29015981 29016084 -88846543 - MER94 DNA DNA -19 115 4 352 303 107 8 chr9 29016835 29016957 -88845670 - L2 LINE L2 -2 3270 3137 276 138 69 0 chr9 29018828 29018886 -88843741 + MER96B DNA MER1_type? 355 416 -1 8263 137 13 5 chr9 29019194 29020665 -88841962 - L1P LINE L1 -1859 4287 2805 2828 198 19 68 chr9 29020675 29021638 -88840989 - L1P3 LINE L1 -4735 1140 571 269 266 237 30 chr9 29023066 29023235 -88839392 + MIR SINE MIR 14 217 -45 291 114 0 0 chr9 29023417 29023461 -88839166 + (TG)n Simple_repeat Simple_repeat 1 44 0 348 197 113 63 chr9 29023589 29023731 -88838896 - L1MEc LINE L1 -4614 1782 1634 206 213 0 0 chr9 29024480 29024527 -88838100 + C-rich Low_complexity Low_complexity 1 47 0 461 162 0 0 chr9 29024549 29024623 -88838004 + AluJb SINE Alu 179 252 -60 286 55 0 73 chr9 29024628 29024683 -88837944 + (GGAA)n Simple_repeat Simple_repeat 3 53 0 4306 202 44 25 chr9 29024685 29025695 -88836932 + L1MD2 LINE L1 5118 6149 -210 369 43 0 0 chr9 29025695 29025742 -88836885 + (GA)n Simple_repeat Simple_repeat 2 48 0 4306 202 44 25 chr9 29025742 29025956 -88836671 + L1MD2 LINE L1 6149 6358 -1 2711 108 0 12 chr9 29027258 29027676 -88834951 - LTR46-int LTR ERV1 -3616 3369 2957 753 312 48 45 chr9 29028322 29028659 -88833968 - L2 LINE L2 0 3272 2935 695 102 62 55 chr9 29028780 29028908 -88833719 - L1PA11 LINE L1 -4 6170 6042 8806 114 4 64 chr9 29028913 29030541 -88832086 + L1P LINE L1 3230 4760 -1386 221 333 0 32 chr9 29030906 29030999 -88831628 - L2 LINE L2 -50 3222 3133 2166 144 28 0 chr9 29031076 29031430 -88831197 + THE1B LTR MaLR 1 364 0 27 29 0 0 chr9 29031809 29031843 -88830784 + AT_rich Low_complexity Low_complexity 1 34 0 370 266 86 22 chr9 29031918 29032057 -88830570 - MIR SINE MIR -10 252 105 226 250 10 10 chr9 29032542 29032642 -88829985 + CT-rich Low_complexity Low_complexity 4 103 0 183 42 0 0 chr9 29032649 29032673 -88829954 + (TCCA)n Simple_repeat Simple_repeat 2 25 0 2094 109 42 0 chr9 29033358 29033689 -88828938 + L1PA13 LINE L1 5800 6144 -19 304 272 29 10 chr9 29034556 29034659 -88827968 - L2 LINE L2 -192 3080 2976 483 244 25 125 chr9 29034701 29034980 -88827647 + MIR SINE MIR 12 262 0 2504 83 37 35 chr9 29035721 29036095 -88826532 - THE1C LTR MaLR 0 375 1 352 302 56 8 chr9 29036192 29036318 -88826309 - MIR SINE MIR -116 146 15 313 300 55 0 chr9 29036486 29036596 -88826031 + MER69 DNA AcHobo 137 252 -974 557 241 45 60 chr9 29036671 29036741 -88825886 + MER69 DNA AcHobo 373 443 -2083 1371 171 98 14 chr9 29036741 29037028 -88825599 - AluJb SINE Alu -1 311 1 557 241 45 60 chr9 29037028 29037156 -88825471 + MER69 DNA AcHobo 443 568 -1958 * 1250 231 111 6 chr9 29037144 29037620 -88825007 + MER69 DNA AcHobo 2000 2525 -1 2687 138 5 14 chr9 29037636 29038079 -88824548 - L1PA16 LINE L1 -10 6156 5718 1814 95 67 21 chr9 29038607 29038892 -88823735 - MER1B DNA MER1_type 0 339 42 839 195 0 6 chr9 29039401 29039570 -88823057 + L1PB1 LINE L1 5980 6147 -4 36 0 0 0 chr9 29039570 29039606 -88823021 + AT_rich Low_complexity Low_complexity 1 36 0 239 256 37 24 chr9 29039718 29039800 -88822827 + MER5B DNA MER1_type 17 99 -79 408 194 8 108 chr9 29039931 29040060 -88822567 + MER94 DNA DNA 1 116 -18 296 291 75 22 chr9 29040076 29040210 -88822417 - L3 LINE CR1 -214 1363 1223 231 340 21 21 chr9 29041438 29041532 -88821095 - L2 LINE L2 -206 3066 2973 707 265 51 10 chr9 29041563 29041759 -88820868 - MIR SINE MIR -21 241 38 5552 87 12 4 chr9 29042206 29043382 -88819245 - L1P3 LINE L1 -442 5730 4552 336 349 54 0 chr9 29043627 29043776 -88818851 - L2 LINE L2 -1 3271 3115 314 320 178 18 chr9 29044471 29044696 -88817931 + L1ME4a LINE L1 5590 5850 -271 598 187 41 142 chr9 29044760 29045006 -88817621 - L1MD1 LINE L1 -11 6231 6011 948 223 27 0 chr9 29045007 29045263 -88817364 - L1 LINE L1 -2882 3264 3002 2082 133 23 0 chr9 29045266 29045566 -88817061 - AluSx SINE Alu -5 307 1 8413 163 14 57 chr9 29045584 29047570 -88815057 + L1M1 LINE L1 3566 5472 -748 819 194 11 81 chr9 29047671 29047857 -88814770 + MER58B DNA MER1_type 169 341 0 261 212 85 80 chr9 29047874 29048086 -88814541 + L1ME4a LINE L1 5862 6074 -47 281 24 49 0 chr9 29049508 29049549 -88813078 + (CAAAA)n Simple_repeat Simple_repeat 2 44 0 276 261 70 35 chr9 29050629 29050771 -88811856 - MER117 DNA MER1_type -49 148 2 378 207 51 12 chr9 29050810 29050907 -88811720 - MIR3 SINE MIR -49 159 57 250 304 88 47 chr9 29051268 29051416 -88811211 - MIR3 SINE MIR -6 202 49 461 322 17 17 chr9 29051433 29051610 -88811017 + MER5B DNA MER1_type 1 177 -1 205 348 75 25 chr9 29052952 29053113 -88809514 - L3 LINE CR1 -62 1515 1347 486 288 62 0 chr9 29053141 29053287 -88809340 - MER63 DNA MER1_type -276 786 6 229 315 0 22 chr9 29053292 29053384 -88809243 - L3 LINE CR1 -263 1314 1225 227 335 118 19 chr9 29053436 29053597 -88809030 + MIR SINE MIR 86 262 0 1414 226 160 63 chr9 29054111 29054681 -88807946 + MLT1E1 LTR MaLR 23 647 -7 187 320 122 27 chr9 29054689 29054836 -88807791 - L3 LINE CR1 -329 1248 1088 229 283 50 50 chr9 29055882 29055981 -88806646 - MIR SINE MIR -65 143 45 21 0 0 0 chr9 29056063 29056084 -88806543 + AT_rich Low_complexity Low_complexity 1 21 0 184 218 91 36 chr9 29056304 29056359 -88806268 - L2 LINE L2 -1 3271 3214 433 192 23 100 chr9 29056370 29056500 -88806127 - Charlie7 DNA MER1_type -474 2138 2019 935 211 31 75 chr9 29056514 29056832 -88805795 - Charlie7 DNA MER1_type -814 1798 1495 1687 157 20 17 chr9 29057466 29057759 -88804868 - AluJb SINE Alu -17 295 2 21 36 0 0 chr9 29057913 29057941 -88804686 + AT_rich Low_complexity Low_complexity 1 28 0 443 302 92 25 chr9 29058175 29058643 -88803984 - HAL1b LINE L1 -829 1532 169 661 213 0 22 chr9 29058715 29058851 -88803776 - FLAM_A SINE Alu 0 133 1 189 213 0 0 chr9 29058925 29058972 -88803655 + CT-rich Low_complexity Low_complexity 6 52 0 2409 194 36 27 chr9 29059710 29060263 -88802364 - MER74A LTR ERVL 0 558 1 485 302 73 0 chr9 29060408 29060600 -88802027 + MIR SINE MIR 1 206 -56 1137 111 0 0 chr9 29060761 29060914 -88801713 + MER41C LTR ERV1 1 153 -401 230 182 23 0 chr9 29061015 29061059 -88801568 + MER41B LTR ERV1 591 635 0 333 328 40 50 chr9 29061426 29061624 -88801003 - L2 LINE L2 0 3313 3118 2314 104 3 0 chr9 29062015 29062323 -88800304 - AluSg SINE Alu -1 309 1 317 303 0 38 chr9 29063088 29063220 -88799407 - L1ME LINE L1 -391 5730 5604 13401 116 18 16 chr9 29063635 29065695 -88796932 - LTR46-int LTR ERV1 -1425 5560 3498 231 61 0 0 chr9 29065984 29066017 -88796610 + (TC)n Simple_repeat Simple_repeat 1 33 0 813 186 169 0 chr9 29066103 29066275 -88796352 - MER3 DNA MER1_type -8 201 1 1652 239 70 25 chr9 29066806 29067321 -88795306 + MER68 LTR ERV1 1 538 -24 204 176 0 0 chr9 29067516 29067550 -88795077 + L2 LINE L2 3264 3297 -16 261 75 0 0 chr9 29069640 29069680 -88792947 + (A)n Simple_repeat Simple_repeat 1 40 0 376 239 132 48 chr9 29069699 29069866 -88792761 + MIR SINE MIR 50 230 -32 289 250 12 0 chr9 29071308 29071388 -88791239 - LTR58 LTR ERV1 -249 430 350 508 256 30 54 chr9 29073865 29074033 -88788594 + MIR3 SINE MIR 31 194 -14 2661 156 66 10 chr9 29074458 29074946 -88787681 - MLT2B2 LTR ERVL 0 515 1 1972 154 170 29 chr9 29075624 29076078 -88786549 + MLT2B1 LTR ERVL 1 518 -2 2146 141 123 5 chr9 29076843 29077226 -88785401 + MSTA LTR MaLR 1 428 0 28 0 0 0 chr9 29077850 29077878 -88784749 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr9 29077991 29078024 -88784603 + (CA)n Simple_repeat Simple_repeat 2 34 0 2184 263 94 33 chr9 29078056 29079318 -88783309 + L1MEc LINE L1 745 2083 -4313 180 0 54 54 chr9 29079976 29080013 -88782614 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2436 52 0 0 chr9 29080015 29080305 -88782322 - AluY SINE Alu -21 290 1 261 193 53 0 chr9 29080913 29080970 -88781657 - MIR SINE MIR -96 166 107 315 0 0 0 chr9 29081769 29081804 -88780823 + (TA)n Simple_repeat Simple_repeat 2 36 0 334 268 113 7 chr9 29081896 29082038 -88780589 - MIR SINE MIR 0 262 106 220 349 9 19 chr9 29082278 29082384 -88780243 - MER5A DNA MER1_type -14 175 71 302 357 77 32 chr9 29083094 29083405 -88779222 + L3 LINE CR1 142 466 -1111 313 331 22 29 chr9 29083898 29084037 -88778590 - L1ME3 LINE L1 -231 5931 5794 253 216 0 0 chr9 29084105 29084156 -88778471 + MER33 DNA MER1_type 41 91 -233 303 205 58 42 chr9 29084171 29084304 -88778323 - L1ME3 LINE L1 -388 5776 5643 382 320 17 6 chr9 29084469 29084647 -88777980 - L1M4 LINE L1 -1470 4676 4497 422 295 97 15 chr9 29084972 29085446 -88777181 - L1M4 LINE L1 -2464 3682 3170 25 51 0 0 chr9 29086742 29086781 -88775846 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr9 29087742 29087763 -88774864 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr9 29088427 29088451 -88774176 + (T)n Simple_repeat Simple_repeat 1 24 0 377 353 153 12 chr9 29090052 29090301 -88772326 + L3 LINE CR1 1032 1315 -262 192 250 115 73 chr9 29090477 29090573 -88772054 - L2 LINE L2 -6 3307 3208 188 236 139 0 chr9 29091082 29091154 -88771473 - MIR SINE MIR -34 228 147 1292 189 100 17 chr9 29091622 29091981 -88770646 - Charlie2 DNA MER1_type -618 2244 1856 255 317 29 0 chr9 29091983 29092087 -88770540 - Charlie2 DNA MER1_type -2537 325 219 344 171 57 34 chr9 29092090 29092178 -88770449 + MIR SINE MIR 106 195 -67 709 205 160 65 chr9 29092475 29092782 -88769845 - MLT1C LTR MaLR -131 336 1 194 337 59 10 chr9 29093916 29094017 -88768610 - L2 LINE L2 -40 3273 3168 7180 39 10 2 chr9 29095179 29096309 -88766318 - L1PA5 LINE L1 -15 6139 5002 323 55 0 55 chr9 29096602 29096657 -88765970 + (T)n Simple_repeat Simple_repeat 1 52 0 6102 97 11 5 chr9 29096680 29097805 -88764822 - L1PB1 LINE L1 0 6151 5027 477 0 0 0 chr9 29099003 29099056 -88763571 + (GGAA)n Simple_repeat Simple_repeat 3 55 0 745 243 88 68 chr9 29099068 29099222 -88763405 + MIR SINE MIR 2 164 -98 1736 54 54 17 chr9 29099222 29099461 -88763166 - AluY SINE Alu 0 311 64 745 243 88 68 chr9 29099461 29099557 -88763070 + MIR SINE MIR 164 257 -5 24 0 0 0 chr9 29099983 29100007 -88762620 + AT_rich Low_complexity Low_complexity 1 24 0 314 273 129 22 chr9 29100388 29100527 -88762100 + MIR3 SINE MIR 38 191 -17 833 299 61 30 chr9 29101609 29102003 -88760624 + MLT1I LTR MaLR 1 406 -3 5731 108 28 3 chr9 29102286 29103729 -88758898 + L1PA13 LINE L1 4686 6159 -4 1760 191 22 19 chr9 29105086 29105452 -88757175 - L1MC1 LINE L1 -1 6332 5966 750 53 0 0 chr9 29105452 29105546 -88757081 - AluSg/x SINE Alu -18 294 201 3929 193 17 12 chr9 29105546 29106915 -88755712 - L1MC1 LINE L1 -408 5925 4546 1558 210 58 6 chr9 29106915 29107262 -88755365 + MLT1A1 LTR MaLR 1 365 0 3929 193 17 12 chr9 29107262 29107292 -88755335 - L1MC1 LINE L1 -1787 4546 4518 819 214 22 39 chr9 29107296 29107525 -88755102 - L1MC1 LINE L1 -1922 4224 4000 1622 153 0 0 chr9 29107548 29107783 -88754844 - AluSx SINE Alu -57 255 21 1316 253 51 0 chr9 29107788 29108159 -88754468 - L1MC1 LINE L1 -2451 3695 3306 508 305 103 14 chr9 29108162 29108385 -88754242 + MLT1K LTR MaLR 346 588 0 255 232 0 18 chr9 29110312 29110368 -88752259 + (TG)n Simple_repeat Simple_repeat 2 56 0 294 136 37 0 chr9 29111185 29111266 -88751361 + CT-rich Low_complexity Low_complexity 2 85 0 225 281 146 12 chr9 29111422 29111504 -88751123 + L3 LINE CR1 1368 1460 -117 233 192 0 0 chr9 29111504 29111556 -88751071 - L1ME LINE L1 -470 5694 5643 4563 249 56 14 chr9 29111614 29113330 -88749297 - L1ME LINE L1 -644 5520 3742 521 256 104 15 chr9 29113486 29113806 -88748821 + L1MEc LINE L1 2014 2317 -3898 198 91 0 0 chr9 29113877 29113910 -88748717 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 262 267 0 76 chr9 29113929 29114034 -88748593 - L1M4 LINE L1 -976 5170 5074 5132 153 27 19 chr9 29114148 29115578 -88747049 + L1PB4 LINE L1 4716 6156 0 2123 101 3 22 chr9 29115612 29115928 -88746699 + AluSg SINE Alu 1 310 0 602 257 77 50 chr9 29116856 29117218 -88745409 + L1ME LINE L1 5282 5653 -468 27 0 0 0 chr9 29118784 29118811 -88743816 + AT_rich Low_complexity Low_complexity 1 27 0 273 299 117 30 chr9 29118969 29119166 -88743461 - L1ME LINE L1 -287 5834 5621 339 324 20 0 chr9 29120293 29120395 -88742232 - ERVL LTR ERVL -463 5301 5198 292 344 132 21 chr9 29120653 29120941 -88741686 - ERVL LTR ERVL -865 4899 4580 429 305 53 102 chr9 29120972 29121536 -88741091 - L2 LINE L2 -209 3063 2532 853 316 193 10 chr9 29121537 29122334 -88740293 - L2 LINE L2 -1096 2218 1276 268 323 54 38 chr9 29122627 29122813 -88739814 + L2 LINE L2 2788 2976 -338 203 311 67 44 chr9 29123012 29123192 -88739435 - L2 LINE L2 -1116 2198 2015 831 317 134 15 chr9 29124747 29125202 -88737425 + L2 LINE L2 2605 3176 -137 2048 152 24 24 chr9 29125202 29125576 -88737051 - THE1C LTR MaLR 0 375 2 831 317 134 15 chr9 29125576 29125733 -88736894 + L2 LINE L2 3176 3313 0 639 287 57 18 chr9 29126013 29126295 -88736332 + L1ME4a LINE L1 5508 5800 -321 21 36 0 0 chr9 29126354 29126382 -88736245 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 29126510 29126533 -88736094 + AT_rich Low_complexity Low_complexity 1 23 0 257 211 35 35 chr9 29126647 29126704 -88735923 - L2 LINE L2 -3 3269 3213 302 281 37 0 chr9 29127142 29127224 -88735403 + L2 LINE L2 3227 3311 -2 306 275 0 12 chr9 29128990 29129070 -88733557 + GA-rich Low_complexity Low_complexity 3 81 0 302 329 98 21 chr9 29129134 29129277 -88733350 + L1ME4a LINE L1 5968 6121 0 1322 222 37 53 chr9 29130548 29130927 -88731700 + MLT1A2 LTR MaLR 2 374 0 23 0 0 0 chr9 29131916 29131939 -88730688 + AT_rich Low_complexity Low_complexity 1 23 0 367 244 152 24 chr9 29132195 29132359 -88730268 - MIR SINE MIR -76 186 2 25 31 0 0 chr9 29133912 29133944 -88728683 + AT_rich Low_complexity Low_complexity 1 32 0 2100 91 0 7 chr9 29134938 29135213 -88727414 + AluSc SINE Alu 1 273 -36 198 0 0 0 chr9 29135215 29135237 -88727390 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 363 258 45 8 chr9 29139924 29140056 -88722571 + MER103 DNA DNA 8 144 -22 420 307 80 62 chr9 29144566 29144791 -88717836 + MIR SINE MIR 2 230 -32 430 272 123 32 chr9 29145786 29146102 -88716525 + L1ME4a LINE L1 4125 4469 -1677 21 0 0 0 chr9 29146150 29146171 -88716456 + AT_rich Low_complexity Low_complexity 1 21 0 340 333 161 19 chr9 29146219 29146690 -88715937 + L1ME4a LINE L1 4628 5165 -981 317 343 102 46 chr9 29146799 29147082 -88715545 + L1ME4a LINE L1 5349 5647 -2161 2250 110 68 11 chr9 29147238 29147593 -88715034 + THE1C LTR MaLR 1 375 0 435 247 44 28 chr9 29147655 29147837 -88714790 + L1ME4a LINE L1 5934 6118 -3 3633 164 52 46 chr9 29147851 29148467 -88714160 - L1MA4A LINE L1 -5 6306 5641 613 73 12 0 chr9 29148467 29148549 -88714078 - THE1A LTR MaLR 0 355 273 3633 164 52 46 chr9 29148549 29148864 -88713763 - L1MA4A LINE L1 -670 5641 5329 4835 242 135 48 chr9 29149137 29149719 -88712908 - L1ME3 LINE L1 -41 6190 5660 2323 65 7 13 chr9 29149719 29150025 -88712602 - AluSp SINE Alu -9 304 1 4835 242 135 48 chr9 29150025 29150594 -88712033 - L1ME3 LINE L1 -571 5660 5142 1616 177 21 14 chr9 29150594 29150882 -88711745 + AluJo SINE Alu 1 290 -22 4835 242 135 48 chr9 29150882 29151074 -88711553 - L1ME3 LINE L1 -1089 5142 4968 2151 113 0 3 chr9 29151074 29151376 -88711251 - AluSc SINE Alu -8 301 1 4835 242 135 48 chr9 29151376 29152229 -88710398 - L1ME3 LINE L1 -1263 4968 4190 1680 172 36 30 chr9 29152229 29152566 -88710061 + MER44D DNA MER2_type 1 609 0 4835 242 135 48 chr9 29152566 29153835 -88708792 - L1ME3 LINE L1 -2041 4190 2417 583 253 80 34 chr9 29154353 29154740 -88707887 - L1ME3 LINE L1 -3945 2451 2047 1703 148 28 1 chr9 29154742 29155082 -88707545 + MER47A DNA MER2_type 2 366 0 252 274 53 42 chr9 29155091 29155186 -88707441 - L1ME3 LINE L1 -4363 2033 1938 752 348 85 22 chr9 29155187 29155728 -88706899 - L2 LINE L2 -343 2971 2397 180 319 21 0 chr9 29156858 29156905 -88705722 + MIR SINE MIR 45 92 -170 339 272 39 19 chr9 29159732 29159835 -88702792 + MIR SINE MIR 103 207 -55 2848 88 0 0 chr9 29160145 29160533 -88702094 + L1PA8 LINE L1 5785 6172 0 410 117 26 26 chr9 29160956 29161033 -88701594 - MLT1J1 LTR MaLR -19 427 351 * 784 301 118 20 chr9 29161015 29161311 -88701316 - MLT1J2 LTR MaLR -123 327 3 223 352 162 0 chr9 29161867 29161972 -88700655 - L2 LINE L2 -8 3264 3143 500 272 123 48 chr9 29162022 29162419 -88700208 + L1ME4a LINE L1 5675 6101 -20 30 45 0 0 chr9 29162629 29162673 -88699954 + AT_rich Low_complexity Low_complexity 1 44 0 590 277 17 23 chr9 29163293 29163470 -88699157 - MIR SINE MIR -59 203 28 225 0 0 0 chr9 29163484 29163509 -88699118 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 377 252 61 29 chr9 29163513 29163679 -88698948 - MIR SINE MIR -51 157 14 282 281 47 23 chr9 29163910 29164038 -88698589 + MER94 DNA DNA 1 131 -3 210 338 148 24 chr9 29164646 29164856 -88697771 + MIR SINE MIR 21 256 -6 22 0 0 0 chr9 29164862 29164884 -88697743 + AT_rich Low_complexity Low_complexity 1 22 0 228 316 8 26 chr9 29164963 29165080 -88697547 + CT-rich Low_complexity Low_complexity 2 116 0 1906 142 0 23 chr9 29165169 29165471 -88697156 - AluSx SINE Alu -17 295 1 1009 238 26 27 chr9 29166648 29167010 -88695617 + MLT2B2 LTR ERVL 106 515 0 302 271 21 42 chr9 29167112 29167208 -88695419 - MER5A DNA MER1_type -83 106 13 428 256 28 126 chr9 29169136 29169351 -88693276 + MER63A DNA MER1_type 12 205 -5 803 202 50 55 chr9 29169772 29169990 -88692637 + MIR SINE MIR 24 240 -22 218 246 16 16 chr9 29170087 29170148 -88692479 + MER5A DNA MER1_type 108 168 -21 514 292 139 5 chr9 29170271 29170473 -88692154 - MIR SINE MIR -30 232 4 1973 195 0 11 chr9 29172123 29172492 -88690135 + MLT1A1 LTR MaLR 1 365 0 516 314 167 10 chr9 29172672 29172876 -88689751 - MIR SINE MIR -15 247 12 552 323 100 23 chr9 29174995 29175215 -88687412 - MIR SINE MIR -6 256 20 411 73 0 0 chr9 29175317 29175372 -88687255 + (A)n Simple_repeat Simple_repeat 1 55 0 238 254 32 0 chr9 29176179 29176242 -88686385 + (CATA)n Simple_repeat Simple_repeat 2 66 0 892 257 45 29 chr9 29176244 29176489 -88686138 - MIR SINE MIR -6 256 8 404 269 80 51 chr9 29176504 29176679 -88685948 + MIR SINE MIR 33 212 -50 215 325 0 25 chr9 29177231 29177311 -88685316 - L2 LINE L2 -6 3307 3230 196 333 0 60 chr9 29177336 29177420 -88685207 + MIR SINE MIR 68 146 -62 * 232 339 59 59 chr9 29177418 29177536 -88685091 - MIR3 SINE MIR -78 130 13 435 183 97 0 chr9 29178578 29178671 -88683956 - MIR SINE MIR -77 185 84 289 255 62 90 chr9 29179191 29179336 -88683291 + MIR SINE MIR 10 150 -112 213 320 48 10 chr9 29180829 29180932 -88681695 + MIR SINE MIR 82 188 -74 270 179 0 0 chr9 29181059 29181115 -88681512 + CT-rich Low_complexity Low_complexity 3 58 0 475 216 137 10 chr9 29181119 29181221 -88681406 - FLAM_A SINE Alu -18 115 1 6742 45 11 1 chr9 29181650 29182489 -88680138 - L1PA5 LINE L1 -14 6140 5294 809 301 39 27 chr9 29182520 29182852 -88679775 + L2 LINE L2 2361 2696 -618 243 338 208 22 chr9 29182859 29183176 -88679451 + L2 LINE L2 2883 3258 -55 339 25 0 0 chr9 29183228 29183268 -88679359 + (TG)n Simple_repeat Simple_repeat 1 40 0 501 325 108 10 chr9 29183468 29183671 -88678956 - MIR SINE MIR -28 234 12 403 150 12 12 chr9 29183938 29184018 -88678609 + MER116 DNA Mariner 1 80 0 360 315 98 16 chr9 29184373 29184557 -88678070 - MIR SINE MIR -61 201 3 224 292 111 0 chr9 29186174 29186246 -88676381 - L2 LINE L2 -6 3307 3228 23 54 0 0 chr9 29186385 29186422 -88676205 + AT_rich Low_complexity Low_complexity 1 37 0 814 170 12 55 chr9 29187174 29187339 -88675288 + AluJb SINE Alu 137 294 -18 2351 195 68 8 chr9 29187582 29188197 -88674430 + L1MA4 LINE L1 2629 3280 -2866 1195 180 138 22 chr9 29188204 29188657 -88673970 + LTR60 LTR ERV1 1 577 -9 4463 177 52 23 chr9 29188823 29189805 -88672822 + L1MA4 LINE L1 3288 4297 -1849 * 4928 140 55 11 chr9 29189804 29190687 -88671940 + L1MA4 LINE L1 5379 6300 0 247 348 59 0 chr9 29191188 29191306 -88671321 + MIR SINE MIR 17 141 -121 188 267 0 0 chr9 29191377 29191422 -88671205 - L2 LINE L2 -11 3261 3217 22 35 0 0 chr9 29191787 29191816 -88670811 + AT_rich Low_complexity Low_complexity 1 29 0 863 226 60 154 chr9 29191831 29192279 -88670348 + MLT1G LTR MaLR 1 403 -139 1869 137 6 38 chr9 29192279 29192593 -88670034 + AluSx SINE Alu 1 304 -8 863 226 60 154 chr9 29192593 29192623 -88670004 + MLT1G LTR MaLR 403 434 -108 324 0 0 0 chr9 29193219 29193255 -88669372 + (GA)n Simple_repeat Simple_repeat 2 37 0 390 40 0 0 chr9 29193633 29193683 -88668944 - MADE1 DNA Mariner -30 50 1 230 250 0 0 chr9 29194150 29194194 -88668433 + polypurine Low_complexity Low_complexity 3 46 0 207 315 14 14 chr9 29194387 29194460 -88668167 - L2 LINE L2 -4 3268 3196 301 261 17 119 chr9 29195207 29195383 -88667244 - MIR3 SINE MIR -32 176 19 4336 164 26 49 chr9 29196458 29197109 -88665518 + MER6 DNA MER2_type 4 668 -197 465 34 0 0 chr9 29197109 29197168 -88665459 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 4336 164 26 49 chr9 29197168 29197254 -88665373 + MER6 DNA MER2_type 668 754 -111 2049 64 0 12 chr9 29197254 29197504 -88665123 - AluY SINE Alu -25 286 40 4336 164 26 49 chr9 29197504 29197647 -88664980 + MER6 DNA MER2_type 754 865 0 31 26 0 0 chr9 29198057 29198095 -88664532 + AT_rich Low_complexity Low_complexity 1 38 0 225 379 26 17 chr9 29198097 29198213 -88664414 + L2 LINE L2 3148 3264 -8 197 333 0 0 chr9 29198417 29198465 -88664162 + L2 LINE L2 3246 3293 -20 24 32 0 0 chr9 29199496 29199527 -88663100 + AT_rich Low_complexity Low_complexity 1 31 0 338 282 0 0 chr9 29200711 29200782 -88661845 - L2 LINE L2 0 3313 3243 186 284 0 45 chr9 29200904 29200971 -88661656 - MIR3 SINE MIR -4 204 141 3728 200 77 21 chr9 29202206 29203951 -88658676 + L1MB7 LINE L1 4092 5936 -242 262 164 0 0 chr9 29203967 29204021 -88658606 + L1MB7 LINE L1 6079 6132 -46 1574 157 23 33 chr9 29204449 29204748 -88657879 + AluJo SINE Alu 1 296 -16 566 286 33 22 chr9 29206665 29206847 -88655780 - MER5A DNA MER1_type -5 184 1 416 244 65 8 chr9 29208393 29208516 -88654111 - L1MC/D LINE L1 -433 5731 5602 276 212 71 47 chr9 29208555 29208640 -88653987 + L1ME1 LINE L1 6062 6148 -18 290 323 123 62 chr9 29209598 29209874 -88652753 - L2 LINE L2 0 3313 3021 9288 178 29 23 chr9 29210293 29212694 -88649933 + L1PA15 LINE L1 3318 5719 -446 2135 144 41 0 chr9 29212705 29213067 -88649560 + L1PA15 LINE L1 5787 6163 -2 271 284 23 23 chr9 29213603 29213691 -88648936 + MIR3 SINE MIR 73 160 -48 227 352 34 34 chr9 29213687 29213863 -88648764 + MER5A DNA MER1_type 13 188 -1 * 3659 262 85 25 chr9 29214007 29214066 -88648561 - L1MCb LINE L1 -2471 4093 4039 1621 158 0 0 chr9 29214066 29214365 -88648262 + AluSx SINE Alu 38 336 0 3659 262 85 25 chr9 29214365 29216418 -88646209 - L1MCb LINE L1 -2525 4039 1884 3717 206 83 145 chr9 29216459 29217934 -88644693 - L1MCb LINE L1 -4851 1194 3 299 322 23 0 chr9 29218011 29218098 -88644529 + MER91A DNA MER1_type 1 89 -107 401 288 142 52 chr9 29219653 29219865 -88642762 + L2 LINE L2 2674 2904 -410 600 169 181 12 chr9 29220141 29220301 -88642326 - MER5A DNA MER1_type 0 189 3 206 375 0 0 chr9 29220351 29220423 -88642204 + MIR SINE MIR 30 101 -107 474 269 192 16 chr9 29220963 29221156 -88641471 - MIR SINE MIR -26 236 10 530 292 72 15 chr9 29221363 29221558 -88641069 + MIR SINE MIR 57 262 0 817 184 80 2 chr9 29222342 29222608 -88640019 + MER2 DNA MER2_type 14 344 -1 378 284 124 12 chr9 29222988 29223157 -88639470 - MER5A DNA MER1_type 0 189 2 204 277 151 17 chr9 29223497 29223616 -88639011 + MIR SINE MIR 128 262 0 28 29 0 0 chr9 29225136 29225171 -88637456 + AT_rich Low_complexity Low_complexity 1 35 0 480 119 76 0 chr9 29225172 29225272 -88637355 - L1MA7 LINE L1 -11 6289 6166 487 257 88 29 chr9 29225275 29225446 -88637181 + MIR SINE MIR 20 200 -62 316 317 31 37 chr9 29226313 29226474 -88636153 - MIR SINE MIR -47 215 56 22 70 0 0 chr9 29228527 29228570 -88634057 + AT_rich Low_complexity Low_complexity 1 43 0 300 27 0 0 chr9 29229662 29229699 -88632928 + (CA)n Simple_repeat Simple_repeat 2 38 0 215 327 53 114 chr9 29231156 29231517 -88631110 + L2 LINE L2 2934 3272 0 639 246 67 42 chr9 29231609 29231849 -88630778 - MIR SINE MIR -10 252 7 2657 24 0 0 chr9 29232194 29232491 -88630136 + AluYa5 SINE Alu 1 297 -14 180 0 0 0 chr9 29234207 29234227 -88628400 + (T)n Simple_repeat Simple_repeat 1 20 0 396 254 156 15 chr9 29234423 29234628 -88627999 - MIR SINE MIR -17 245 12 195 336 98 49 chr9 29234650 29234772 -88627855 - L2 LINE L2 -19 3253 3126 581 227 45 61 chr9 29235718 29235916 -88626711 + MIR SINE MIR 26 220 -42 682 203 150 72 chr9 29237383 29237783 -88624844 - L1MC5 LINE L1 -48 7913 7483 204 266 114 0 chr9 29237948 29238027 -88624600 + MIR SINE MIR 86 173 -89 674 260 51 11 chr9 29240086 29240263 -88622364 - MER5A DNA MER1_type -1 188 5 469 329 60 16 chr9 29241281 29241530 -88621097 + MIR SINE MIR 3 262 0 429 274 181 18 chr9 29241675 29241956 -88620671 + L1ME4a LINE L1 4564 4890 -1256 366 311 112 25 chr9 29242456 29242697 -88619930 + L1ME4a LINE L1 5710 5971 -150 487 330 126 20 chr9 29243553 29243996 -88618631 - L2 LINE L2 -469 2845 2356 363 306 36 9 chr9 29244001 29244112 -88618515 - L2 LINE L2 -33 3280 3167 440 232 76 32 chr9 29244143 29244328 -88618299 + L1MC4a LINE L1 7383 7575 -233 185 206 111 48 chr9 29245305 29245368 -88617259 - L2 LINE L2 -58 3255 3189 182 370 37 0 chr9 29246491 29246572 -88616055 - MIR SINE MIR -81 127 44 556 345 57 59 chr9 29246713 29247171 -88615456 - L2 LINE L2 -8 3264 2808 427 281 14 58 chr9 29247403 29247542 -88615085 - MER5B DNA MER1_type -1 177 45 233 175 0 0 chr9 29249671 29249711 -88612916 - LTR3b LTR ERVK 0 500 461 3100 144 19 4 chr9 29249713 29250192 -88612435 - LTR3b LTR ERVK -14 486 1 497 245 27 34 chr9 29251031 29251178 -88611449 + MER103 DNA DNA 20 165 -1 229 289 0 0 chr9 29251293 29251383 -88611244 - L1MC4 LINE L1 -1339 6703 6614 210 143 0 0 chr9 29251387 29251422 -88611205 + (TA)n Simple_repeat Simple_repeat 1 35 0 276 396 97 21 chr9 29251585 29251873 -88610754 + L2 LINE L2 2950 3259 -13 280 286 73 38 chr9 29252267 29252554 -88610073 + Charlie7 DNA MER1_type 329 625 -1987 331 168 19 75 chr9 29252684 29252791 -88609836 + Charlie7 DNA MER1_type 2510 2610 -2 284 43 21 43 chr9 29252847 29252894 -88609733 + LTR14B LTR ERVK 1 46 -562 * 1901 100 121 48 chr9 29252882 29253253 -88609374 + LTR14B LTR ERVK 211 608 0 257 292 14 0 chr9 29253684 29253756 -88608871 + MIR SINE MIR 13 85 -177 646 266 116 13 chr9 29254157 29254390 -88608237 - MIR SINE MIR -2 260 4 253 291 186 42 chr9 29254635 29254996 -88607631 + L2 LINE L2 2882 3294 -19 553 191 0 0 chr9 29255066 29255160 -88607467 + L1PB4 LINE L1 6033 6126 -30 440 269 231 16 chr9 29255543 29255729 -88606898 + MIR SINE MIR 1 226 -36 314 202 107 12 chr9 29256200 29256284 -88606343 - L1MC4 LINE L1 -1339 6703 6612 346 184 30 18 chr9 29256284 29256452 -88606175 + (TA)n Simple_repeat Simple_repeat 1 170 0 22 56 0 0 chr9 29256459 29256495 -88606132 + AT_rich Low_complexity Low_complexity 1 36 0 861 186 93 44 chr9 29256505 29256753 -88605874 - L1MB7 LINE L1 0 6184 5925 182 254 0 18 chr9 29257114 29257169 -88605458 - L2 LINE L2 -2 3311 3258 * 188 170 0 113 chr9 29257168 29257221 -88605406 - MIR SINE MIR -75 187 141 620 196 0 0 chr9 29257221 29257323 -88605304 - FLAM_A SINE Alu -15 127 26 387 331 42 7 chr9 29257324 29257466 -88605161 - MIR SINE MIR -113 149 3 349 214 20 92 chr9 29259062 29259160 -88603467 + L2 LINE L2 3223 3313 0 23 33 0 0 chr9 29259338 29259368 -88603259 + AT_rich Low_complexity Low_complexity 1 30 0 203 147 0 0 chr9 29259509 29259543 -88603084 + MIR SINE MIR 118 151 -111 249 291 33 62 chr9 29261250 29261400 -88601227 + MIR SINE MIR 12 159 -49 348 269 15 33 chr9 29261583 29261713 -88600914 - MIR SINE MIR -61 201 78 1345 176 68 84 chr9 29261953 29262333 -88600294 - MLT1A2 LTR MaLR 0 374 1 286 271 0 68 chr9 29262425 29262543 -88600084 - MIR SINE MIR -56 206 97 458 214 68 17 chr9 29262639 29262756 -88599871 - L2 LINE L2 0 3313 3191 266 271 75 9 chr9 29263013 29263120 -88599507 + L2 LINE L2 3192 3305 -8 1576 187 16 26 chr9 29264490 29264800 -88597827 - AluJo SINE Alu -5 307 1 193 348 22 87 chr9 29265428 29265566 -88597061 - MIR3 SINE MIR -74 134 6 26 64 0 0 chr9 29265595 29265642 -88596985 + AT_rich Low_complexity Low_complexity 1 47 0 279 228 94 76 chr9 29267022 29267193 -88595434 + MIR SINE MIR 63 236 -26 528 287 28 6 chr9 29267343 29267524 -88595103 - HsTC2a DNA Tc2 -172 570 386 615 205 0 8 chr9 29267531 29267653 -88594974 + FLAM_C SINE Alu 1 121 -22 1118 261 39 36 chr9 29267666 29268056 -88594571 - HsTC2a DNA Tc2 -347 397 7 263 321 64 28 chr9 29268196 29268305 -88594322 - L2 LINE L2 -5 3267 3155 187 320 10 68 chr9 29268393 29268496 -88594131 - MIR3 SINE MIR -40 168 72 45 62 0 0 chr9 29268703 29268783 -88593844 + AT_rich Low_complexity Low_complexity 1 80 0 516 240 140 43 chr9 29268960 29269260 -88593367 - L1ME3 LINE L1 -211 5951 5623 433 286 68 39 chr9 29269266 29269729 -88592898 - L1M1 LINE L1 -621 5543 5102 342 286 40 29 chr9 29270474 29270668 -88591959 - L1MEc LINE L1 -900 1676 1452 187 85 34 51 chr9 29271566 29271625 -88591002 + GA-rich Low_complexity Low_complexity 2 59 0 575 310 214 36 chr9 29272058 29272356 -88590271 + L3 LINE CR1 62 306 -1271 2151 89 24 7 chr9 29272356 29272647 -88589980 + AluSp SINE Alu 2 297 -16 575 310 214 36 chr9 29272647 29273097 -88589530 + L3 LINE CR1 306 943 -634 1408 349 82 14 chr9 29273496 29274545 -88588082 + L2 LINE L2 2183 3313 0 1161 146 33 38 chr9 29274854 29275067 -88587560 - MER20 DNA MER1_type 0 219 8 544 297 47 18 chr9 29275372 29275618 -88587009 + MIR SINE MIR 13 262 0 180 0 0 0 chr9 29275962 29275982 -88586645 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 222 213 0 0 chr9 29276514 29276561 -88586066 + CT-rich Low_complexity Low_complexity 2 48 0 387 177 0 0 chr9 29277324 29277386 -88585241 + MLT2E LTR ERVL 32 93 -535 221 342 13 0 chr9 29277388 29277464 -88585163 + MIR SINE MIR 178 254 -8 22 35 0 0 chr9 29277840 29277869 -88584758 + AT_rich Low_complexity Low_complexity 1 29 0 318 259 189 14 chr9 29278343 29278486 -88584141 - MIR SINE MIR -89 173 6 417 314 26 7 chr9 29278756 29278909 -88583718 - MIR SINE MIR -26 236 81 334 192 51 0 chr9 29279666 29279744 -88582883 + L1MC4a LINE L1 5808 5889 -1919 1184 264 198 35 chr9 29280652 29281106 -88581521 + MLT1H LTR MaLR 6 533 -16 399 273 97 26 chr9 29281829 29281983 -88580644 + MIR SINE MIR 40 204 -58 315 0 0 0 chr9 29281990 29282025 -88580602 + (CA)n Simple_repeat Simple_repeat 2 36 0 26105 46 8 1 chr9 29282413 29286496 -88576131 + L1PA5 LINE L1 2046 6154 0 819 315 28 8 chr9 29286645 29286896 -88575731 - MIR SINE MIR 0 262 7 3264 30 2 0 chr9 29287017 29287424 -88575203 + L1P LINE L1 4959 5366 -780 1281 192 0 5 chr9 29287424 29287648 -88574979 + AluJo SINE Alu 78 300 -12 377 323 46 15 chr9 29287652 29287782 -88574845 + MIR SINE MIR 122 255 -7 346 299 160 27 chr9 29287904 29288091 -88574536 - MLT1I LTR MaLR -197 212 1 6864 26 0 0 chr9 29288534 29289335 -88573292 + L1PA3 LINE L1 5352 6152 -3 1897 156 6 19 chr9 29289514 29289828 -88572799 + AluSx SINE Alu 3 312 0 444 105 13 0 chr9 29289831 29289907 -88572720 + L1MB8 LINE L1 6095 6171 -7 393 328 191 33 chr9 29290952 29291683 -88570944 + L2 LINE L2 2468 3299 -14 220 264 160 90 chr9 29291767 29291911 -88570716 - L2 LINE L2 -11 3261 3108 1175 267 68 13 chr9 29294802 29295248 -88567379 + MLT1H LTR MaLR 79 542 0 249 98 0 0 chr9 29295745 29295786 -88566841 + (T)n Simple_repeat Simple_repeat 1 41 0 415 249 50 99 chr9 29296797 29296998 -88565629 - L2 LINE L2 -5 3308 3118 1290 191 36 102 chr9 29297039 29297399 -88565228 + MLT1B LTR MaLR 1 332 -58 1898 157 49 12 chr9 29297399 29297724 -88564903 + MER1B DNA MER1_type 1 337 0 1290 191 36 102 chr9 29297724 29297776 -88564851 + MLT1B LTR MaLR 332 386 -4 344 324 147 0 chr9 29298198 29298368 -88564259 + MIR SINE MIR 62 256 -6 299 275 62 167 chr9 29298469 29298793 -88563834 + L2 LINE L2 2941 3230 -42 299 254 44 35 chr9 29298893 29299007 -88563620 + MIR3 SINE MIR 87 201 -7 463 296 66 15 chr9 29300201 29300386 -88562241 - MIR SINE MIR -6 256 65 10300 105 10 4 chr9 29300455 29302909 -88559718 + L1PA8 LINE L1 3710 6172 0 221 0 35 0 chr9 29303386 29303415 -88559212 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 40342 31 22 1 chr9 29303415 29309356 -88553271 - L1HS LINE L1 -16 6139 73 299 95 0 0 chr9 29309447 29309489 -88553138 + L1PA10 LINE L1 5540 5581 -587 1752 116 8 4 chr9 29309489 29309739 -88552888 + L1PA10 LINE L1 5902 6161 -7 598 99 77 0 chr9 29310737 29310828 -88551799 - AluSg/x SINE Alu -125 187 90 557 315 71 21 chr9 29310854 29311092 -88551535 + MIR SINE MIR 13 262 0 21 0 0 0 chr9 29313782 29313803 -88548824 + AT_rich Low_complexity Low_complexity 1 21 0 231 361 118 6 chr9 29313911 29314080 -88548547 - MIR SINE MIR -70 192 5 2327 81 7 10 chr9 29315161 29315456 -88547171 - AluY SINE Alu -17 294 1 431 218 61 87 chr9 29318640 29318869 -88543758 + MLT1H LTR MaLR 74 296 -253 301 296 72 8 chr9 29319304 29319429 -88543198 + MIR SINE MIR 15 147 -115 509 286 32 38 chr9 29319592 29319777 -88542850 - MIR3 SINE MIR -5 203 20 1790 232 50 56 chr9 29320262 29320819 -88541808 + MLT2B3 LTR ERVL 1 554 0 309 332 30 62 chr9 29323422 29323566 -88539061 + MIR SINE MIR 17 154 -67 469 232 87 7 chr9 29324863 29325001 -88537626 - L2 LINE L2 -960 2354 2206 666 312 194 13 chr9 29325196 29325753 -88536874 + L2 LINE L2 2052 2709 -605 249 196 139 76 chr9 29327322 29327480 -88535147 + L2 LINE L2 3098 3265 -48 333 282 12 12 chr9 29327743 29327828 -88534799 - MER91A DNA MER1_type 0 196 112 1957 186 60 55 chr9 29328212 29328689 -88533938 + MLT2B1 LTR ERVL 6 488 -32 261 0 0 0 chr9 29328689 29328718 -88533909 + (CA)n Simple_repeat Simple_repeat 2 30 0 1957 186 60 55 chr9 29328718 29328752 -88533875 + MLT2B1 LTR ERVL 488 520 0 23 0 0 0 chr9 29328808 29328831 -88533796 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr9 29329068 29329095 -88533532 + AT_rich Low_complexity Low_complexity 1 27 0 440 298 44 63 chr9 29329462 29329667 -88532960 - MIR SINE MIR -28 234 34 312 351 155 65 chr9 29331973 29332340 -88530287 + L2 LINE L2 2835 3234 -38 31 68 0 0 chr9 29332401 29332460 -88530167 + AT_rich Low_complexity Low_complexity 1 59 0 366 263 28 50 chr9 29332784 29332969 -88529658 + MER20B DNA MER1_type 17 202 -17 2039 110 14 3 chr9 29333125 29333415 -88529212 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr9 29335392 29335413 -88527214 + AT_rich Low_complexity Low_complexity 1 21 0 286 293 0 20 chr9 29335511 29335610 -88527017 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 225 346 9 20 chr9 29335795 29335947 -88526680 + MER5B DNA MER1_type 1 159 -30 266 180 16 0 chr9 29337121 29337182 -88525445 + CT-rich Low_complexity Low_complexity 1 62 0 288 263 0 0 chr9 29338064 29338144 -88524483 + L1M1 LINE L1 3539 3618 -3947 210 297 14 0 chr9 29338741 29338815 -88523812 + MIR SINE MIR 21 95 -167 545 88 12 0 chr9 29340703 29340783 -88521844 + AluSc SINE Alu 4 84 -225 484 117 45 72 chr9 29340776 29341763 -88520864 + SVA Other Other 496 603 -783 * 1580 102 0 0 chr9 29341867 29342072 -88520555 + AluSc SINE Alu 73 277 -32 403 340 5 5 chr9 29342640 29342846 -88519781 + L1ME LINE L1 3760 3965 -2181 205 204 23 0 chr9 29342885 29342929 -88519698 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 647 298 101 62 chr9 29343175 29343580 -88519047 + L1ME LINE L1 4298 4686 -1460 2228 140 23 52 chr9 29343580 29344022 -88518605 + MSTB1 LTR MaLR 1 429 -3 647 298 101 62 chr9 29344022 29344516 -88518111 + L1ME LINE L1 4686 5312 -834 239 267 100 0 chr9 29344623 29344713 -88517914 + L1ME LINE L1 5539 5637 -484 236 261 72 0 chr9 29344902 29344971 -88517656 + L2 LINE L2 3218 3291 -22 377 308 39 0 chr9 29346904 29347008 -88515619 + L2 LINE L2 2636 2743 -571 1756 217 19 3 chr9 29347166 29347525 -88515102 + MLT1A1 LTR MaLR 1 365 0 311 237 89 82 chr9 29347865 29348000 -88514627 - MIR SINE MIR -21 241 106 10858 102 15 3 chr9 29348076 29349572 -88513055 - THE1B-int LTR MaLR -66 1514 1 1666 119 218 16 chr9 29349572 29349875 -88512752 - THE1B LTR MaLR 0 364 1 649 143 0 0 chr9 29350941 29351053 -88511574 - L1MA7 LINE L1 0 6291 6180 319 343 46 0 chr9 29352167 29352275 -88510352 + L2 LINE L2 3201 3313 0 23 33 0 0 chr9 29353430 29353460 -88509167 + AT_rich Low_complexity Low_complexity 1 30 0 543 304 103 5 chr9 29355837 29356041 -88506586 - MIR SINE MIR -13 249 26 210 335 106 59 chr9 29357579 29357663 -88504964 - L2 LINE L2 0 3272 3193 216 86 0 0 chr9 29357663 29357698 -88504929 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 210 335 106 59 chr9 29357698 29357783 -88504844 - L2 LINE L2 -79 3193 3095 * 250 192 291 46 chr9 29357763 29357914 -88504713 + MIR SINE MIR 10 197 -65 546 287 35 59 chr9 29358646 29358871 -88503756 - L1MEc LINE L1 -6027 369 153 1739 172 0 20 chr9 29358871 29359174 -88503453 - AluSx SINE Alu -11 301 5 546 287 35 59 chr9 29359174 29359289 -88503338 - L1MEc LINE L1 -6243 153 37 338 232 61 20 chr9 29359651 29359750 -88502877 + MLT1K LTR MaLR 435 537 -51 270 276 0 0 chr9 29360431 29360489 -88502138 - L2 LINE L2 -12 3260 3203 24 0 0 0 chr9 29360640 29360664 -88501963 + AT_rich Low_complexity Low_complexity 1 24 0 673 209 32 19 chr9 29361020 29361178 -88501449 - L2 LINE L2 -4 3309 3150 234 217 12 60 chr9 29361223 29361306 -88501321 - L2 LINE L2 -1559 1755 1677 663 302 142 30 chr9 29361311 29361649 -88500978 + L2 LINE L2 2935 3310 -3 181 244 90 64 chr9 29361746 29361824 -88500803 - MIR SINE MIR -39 223 144 2092 171 146 9 chr9 29362040 29362484 -88500143 - MLT1D LTR MaLR 0 505 1 2282 60 16 44 chr9 29363219 29363537 -88499090 + AluY SINE Alu 2 310 -1 2745 7 0 0 chr9 29363601 29363899 -88498728 + AluYa5 SINE Alu 1 298 -13 287 321 0 9 chr9 29363903 29364015 -88498612 - MIR SINE MIR -36 226 116 201 159 0 0 chr9 29365967 29366011 -88496616 + (CA)n Simple_repeat Simple_repeat 1 44 0 247 336 187 0 chr9 29366206 29366313 -88496314 + L2 LINE L2 3137 3263 -9 380 84 0 42 chr9 29366363 29366382 -88496245 + (GA)n Simple_repeat Simple_repeat 1 19 -49 222 62 0 0 chr9 29366382 29366414 -88496213 + (TG)n Simple_repeat Simple_repeat 1 32 0 380 84 0 42 chr9 29366414 29366465 -88496162 + (GA)n Simple_repeat Simple_repeat 19 68 0 341 331 14 14 chr9 29366823 29366962 -88495665 - MLT2E LTR ERVL -450 178 40 185 338 14 27 chr9 29367514 29367588 -88495039 + L2 LINE L2 2710 2782 -532 394 315 31 8 chr9 29368091 29368218 -88494409 - MIR SINE MIR -50 212 83 488 261 33 7 chr9 29368984 29369137 -88493490 + MIR SINE MIR 106 262 0 296 207 96 0 chr9 29369250 29369345 -88493282 - MIR SINE MIR -62 146 88 282 115 39 39 chr9 29370739 29370817 -88491810 + (CTATA)n Simple_repeat Simple_repeat 3 80 0 483 60 5 101 chr9 29370819 29371018 -88491609 + (TA)n Simple_repeat Simple_repeat 1 180 0 323 126 45 18 chr9 29371077 29371188 -88491439 + (CTATA)n Simple_repeat Simple_repeat 2 115 0 180 77 0 0 chr9 29372312 29372338 -88490289 + (CA)n Simple_repeat Simple_repeat 1 26 0 893 230 11 0 chr9 29372897 29373084 -88489543 + MER5A DNA MER1_type 1 189 0 489 103 13 0 chr9 29373256 29373334 -88489293 - L1PA8A LINE L1 -1634 4512 4434 * 6384 89 14 1 chr9 29373326 29374912 -88487715 + L1PA8A LINE L1 4514 6111 -20 718 255 25 6 chr9 29374946 29375107 -88487520 + MER58A DNA MER1_type 1 164 0 420 264 54 36 chr9 29375392 29375559 -88487068 - MER117 DNA MER1_type -23 174 5 188 254 26 9 chr9 29376015 29376129 -88486498 + GA-rich Low_complexity Low_complexity 1 116 0 240 59 0 0 chr9 29376429 29376463 -88486164 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1924 282 44 42 chr9 29377867 29378699 -88483928 - L2 LINE L2 -6 3307 2471 2062 134 3 0 chr9 29378699 29378998 -88483629 + AluSx SINE Alu 1 300 -12 1924 282 44 42 chr9 29378998 29379149 -88483478 - L2 LINE L2 -842 2471 2322 1347 75 0 0 chr9 29380704 29380957 -88481670 + (GGAA)n Simple_repeat Simple_repeat 1 253 0 2095 176 0 11 chr9 29381605 29381964 -88480663 + MLT1A1 LTR MaLR 1 355 -10 204 245 19 0 chr9 29382778 29382831 -88479796 + CT-rich Low_complexity Low_complexity 4 57 0 180 314 129 14 chr9 29382832 29382902 -88479725 - L2 LINE L2 -9 3304 3227 1049 299 128 8 chr9 29382904 29383419 -88479208 + L2 LINE L2 1886 2462 -852 187 133 44 0 chr9 29383475 29383520 -88479107 + (TA)n Simple_repeat Simple_repeat 1 47 0 27 0 0 0 chr9 29383593 29383620 -88479007 + AT_rich Low_complexity Low_complexity 1 27 0 33 25 0 0 chr9 29384602 29384642 -88477985 + AT_rich Low_complexity Low_complexity 1 40 0 1243 269 73 21 chr9 29384869 29385430 -88477197 - MLT1G1 LTR MaLR 0 567 1 697 266 94 5 chr9 29385542 29385745 -88476882 - MIR SINE MIR -29 233 13 388 315 50 57 chr9 29385812 29386250 -88476377 + L1MC/D LINE L1 2154 2588 -3558 312 321 32 43 chr9 29386737 29386924 -88475703 + L1MC/D LINE L1 3288 3472 -2674 284 274 47 58 chr9 29387082 29387356 -88475271 + L1MC/D LINE L1 3692 3962 -2184 728 326 87 72 chr9 29387444 29387993 -88474634 + L1MC/D LINE L1 4080 4619 -1527 2171 170 18 18 chr9 29387993 29388428 -88474199 + L1MA4 LINE L1 5852 6286 -14 728 326 87 72 chr9 29388428 29389103 -88473524 + L1MC/D LINE L1 4619 5322 -824 388 306 89 12 chr9 29389115 29389363 -88473264 + L1MC/D LINE L1 5392 5658 -2150 191 267 253 0 chr9 29390073 29390148 -88472479 - L3 LINE CR1 -11 1566 1473 282 240 0 80 chr9 29390393 29390493 -88472134 + L2 LINE L2 3181 3272 0 2542 55 3 0 chr9 29390564 29390872 -88471755 - AluY SINE Alu -2 309 1 5538 11 0 2 chr9 29392313 29392945 -88469682 - L1PA2 LINE L1 -2 6153 5523 222 150 0 0 chr9 29393021 29393061 -88469566 + (TCC)n Simple_repeat Simple_repeat 3 42 0 1683 181 66 36 chr9 29393162 29393526 -88469101 - MLT1C LTR MaLR -91 376 2 224 333 16 32 chr9 29393526 29393649 -88468978 - MER5A DNA MER1_type -68 121 1 221 244 105 47 chr9 29393906 29393992 -88468635 + MIR SINE MIR 84 174 -88 321 303 71 0 chr9 29394173 29394272 -88468355 + L2 LINE L2 3192 3297 -16 349 284 26 26 chr9 29395110 29395265 -88467362 + MER103 DNA DNA 3 157 -9 195 204 0 0 chr9 29395458 29395502 -88467125 + (CA)n Simple_repeat Simple_repeat 2 45 0 604 289 93 21 chr9 29396526 29396806 -88465821 + L2 LINE L2 2934 3233 -80 2004 131 55 0 chr9 29397135 29397425 -88465202 + AluSg SINE Alu 1 306 -4 724 294 119 39 chr9 29399789 29400278 -88462349 - HAL1 LINE L1 -1968 539 12 23 0 0 0 chr9 29402023 29402046 -88460581 + AT_rich Low_complexity Low_complexity 1 23 0 260 297 0 0 chr9 29403040 29403114 -88459513 + CT-rich Low_complexity Low_complexity 4 77 0 364 91 0 18 chr9 29403169 29403224 -88459403 + MADE1 DNA Mariner 27 80 0 391 308 45 45 chr9 29403509 29403665 -88458962 - MIR SINE MIR -101 161 6 1090 197 5 0 chr9 29403876 29404084 -88458543 - MER3 DNA MER1_type 0 209 1 1009 93 25 12 chr9 29405794 29405956 -88456671 - L1P LINE L1 -1200 4946 4783 23 0 0 0 chr9 29406297 29406320 -88456307 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr9 29406763 29406784 -88455843 + (TC)n Simple_repeat Simple_repeat 1 21 0 203 292 0 0 chr9 29407266 29407314 -88455313 - L2 LINE L2 -17 3255 3208 21 36 0 0 chr9 29407723 29407751 -88454876 + AT_rich Low_complexity Low_complexity 1 28 0 838 239 18 0 chr9 29457839 29458061 -88404566 + L1PA15-16 LINE L1 2575 2800 -4049 1720 170 29 0 chr9 29458274 29458551 -88404076 + AluJb SINE Alu 1 285 -27 503 290 105 0 chr9 29458675 29458837 -88403790 - MIR SINE MIR -32 230 52 2378 165 23 21 chr9 29459333 29459770 -88402857 - Tigger2 DNA MER2_type -1 2717 2280 426 174 0 0 chr9 29459768 29459837 -88402790 - Tigger2 DNA MER2_type -2649 69 1 * 330 238 0 12 chr9 29459996 29460080 -88402547 + LTR67 LTR ERVL 475 557 0 28 0 0 0 chr9 29460095 29460123 -88402504 + AT_rich Low_complexity Low_complexity 1 28 0 323 248 20 20 chr9 29460123 29460272 -88402355 + (TA)n Simple_repeat Simple_repeat 1 149 0 903 236 38 4 chr9 29460282 29460519 -88402108 - L1ME2 LINE L1 -15 6149 5905 318 205 134 18 chr9 29460522 29460634 -88401993 - L1ME2 LINE L1 -466 5698 5574 2214 215 41 20 chr9 29460974 29461587 -88401040 + L1M4 LINE L1 3860 4485 -1661 365 210 217 7 chr9 29461585 29461723 -88400904 - L1ME2 LINE L1 -1501 4645 4479 * 273 350 86 14 chr9 29462015 29462155 -88400472 + L2 LINE L2 3118 3267 -5 183 220 0 0 chr9 29462169 29462219 -88400408 + GA-rich Low_complexity Low_complexity 3 52 0 20721 30 0 0 chr9 29462219 29465473 -88397154 + L1PA3 LINE L1 2902 6155 0 2447 246 25 65 chr9 29465530 29466621 -88396006 + L1ME1 LINE L1 5127 6161 -5 7574 90 15 14 chr9 29466883 29467939 -88394688 - MER11C LTR ERVK -14 1057 1 22 0 0 0 chr9 29468173 29468195 -88394432 + AT_rich Low_complexity Low_complexity 1 22 0 2329 64 0 3 chr9 29469814 29470111 -88392516 - AluY SINE Alu -15 296 1 211 264 167 0 chr9 29470390 29470462 -88392165 - MIR SINE MIR -64 144 61 2351 45 0 78 chr9 29470580 29470912 -88391715 + AluY SINE Alu 1 306 -5 1865 118 7 7 chr9 29471019 29471298 -88391329 + AluSg1 SINE Alu 20 298 -11 299 200 67 22 chr9 29471554 29471644 -88390983 + Charlie7 DNA MER1_type 1 94 -2518 739 274 4 90 chr9 29471786 29472052 -88390575 + MIR SINE MIR 16 258 -4 22 0 0 0 chr9 29472058 29472080 -88390547 + AT_rich Low_complexity Low_complexity 1 22 0 191 257 119 79 chr9 29474369 29474470 -88388157 - MIR SINE MIR -147 115 11 505 266 101 28 chr9 29474676 29474894 -88387733 - MIR SINE MIR 0 262 29 1093 220 61 45 chr9 29475104 29475417 -88387210 - MLT1E2 LTR MaLR -308 318 1 1181 244 75 0 chr9 29475435 29475764 -88386863 + L1ME1 LINE L1 5820 6332 -2 413 340 35 7 chr9 29476040 29476184 -88386443 - MIR3 SINE MIR -38 170 23 23 33 0 0 chr9 29476921 29476951 -88385676 + AT_rich Low_complexity Low_complexity 1 30 0 199 211 26 0 chr9 29477298 29477336 -88385291 + MIR SINE MIR 38 76 -132 226 231 0 19 chr9 29477384 29477436 -88385191 - LTR67 LTR ERVL 0 557 507 565 364 148 6 chr9 29477827 29478218 -88384409 + L2 LINE L2 2669 3114 -199 378 0 0 0 chr9 29478316 29478358 -88384269 + (CA)n Simple_repeat Simple_repeat 2 43 0 356 284 93 12 chr9 29478380 29478542 -88384085 - MIR SINE MIR -86 176 2 2142 121 0 0 chr9 29479197 29479479 -88383148 + AluSx SINE Alu 3 284 -28 540 228 10 93 chr9 29479994 29480187 -88382440 + MER69A DNA AcHobo 1 177 0 3683 136 55 2 chr9 29480230 29480833 -88381794 + MER41B LTR ERV1 1 635 0 236 154 19 0 chr9 29480929 29480981 -88381646 + CT-rich Low_complexity Low_complexity 1 53 0 2115 209 53 51 chr9 29480994 29481313 -88381314 + MER67D LTR ERV1 1 323 -191 2215 113 36 33 chr9 29481313 29481676 -88380951 + THE1B LTR MaLR 1 364 0 2115 209 53 51 chr9 29481676 29481869 -88380758 + MER67D LTR ERV1 323 514 0 2081 135 0 0 chr9 29481885 29482182 -88380445 - AluSg SINE Alu -13 297 1 387 255 26 113 chr9 29482357 29482588 -88380039 + L2 LINE L2 3101 3311 -2 1828 171 51 14 chr9 29482822 29483172 -88379455 + MLT1A1 LTR MaLR 1 363 -2 327 130 0 0 chr9 29483757 29483811 -88378816 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 197 341 82 11 chr9 29484335 29484517 -88378110 + L3 LINE CR1 80 274 -1303 207 125 0 83 chr9 29485488 29485536 -88377091 + L2 LINE L2 2936 2979 -293 289 298 23 38 chr9 29485557 29485688 -88376939 + L2 LINE L2 2958 3086 -186 947 134 23 23 chr9 29485823 29485840 -88376787 - L1MC2 LINE L1 -18 6326 6310 1277 216 45 66 chr9 29485840 29486220 -88376407 + MLT1A2 LTR MaLR 1 372 -2 947 134 23 23 chr9 29486220 29486374 -88376253 - L1MC2 LINE L1 -33 6311 6155 32 57 0 0 chr9 29486931 29486984 -88375643 + AT_rich Low_complexity Low_complexity 1 53 0 1664 191 3 3 chr9 29487381 29487679 -88374948 - AluJb SINE Alu -10 302 5 418 111 111 0 chr9 29488142 29488214 -88374413 + MADE1 DNA Mariner 1 80 0 340 280 11 0 chr9 29490377 29490470 -88372157 + MIR SINE MIR 159 252 -10 21 0 0 0 chr9 29490949 29490970 -88371657 + AT_rich Low_complexity Low_complexity 1 21 0 2236 228 44 9 chr9 29491656 29492608 -88370019 - L1MC/D LINE L1 -427 5815 4830 27 29 0 0 chr9 29492736 29492770 -88369857 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr9 29492899 29492926 -88369701 + AT_rich Low_complexity Low_complexity 1 27 0 330 251 62 56 chr9 29492943 29493122 -88369505 + L1ME4a LINE L1 5924 6103 -18 30 45 0 0 chr9 29493162 29493206 -88369421 + AT_rich Low_complexity Low_complexity 1 44 0 7228 138 4 16 chr9 29493246 29494406 -88368221 + THE1C-int LTR MaLR 435 1580 0 2429 127 14 0 chr9 29494406 29494776 -88367851 + THE1C LTR MaLR 1 375 0 207 0 0 0 chr9 29494811 29494834 -88367793 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 327 266 62 16 chr9 29495254 29495382 -88367245 + MIR SINE MIR 119 252 -10 579 323 84 18 chr9 29495973 29496199 -88366428 + MIR SINE MIR 6 246 -16 27 0 0 0 chr9 29497098 29497125 -88365502 + AT_rich Low_complexity Low_complexity 1 27 0 334 261 71 63 chr9 29500295 29500533 -88362094 + L1ME4a LINE L1 5879 6118 -3 21 0 0 0 chr9 29500542 29500563 -88362064 + AT_rich Low_complexity Low_complexity 1 21 0 1658 258 39 18 chr9 29500743 29501276 -88361351 + MER119 DNA MER1_type 6 583 0 5214 122 35 0 chr9 29501947 29502932 -88359695 - L1PA13 LINE L1 -13 6150 5128 197 358 0 0 chr9 29503394 29503461 -88359166 - L2 LINE L2 -3 3310 3244 567 259 12 53 chr9 29503504 29503674 -88358953 + MER5B DNA MER1_type 15 177 -1 42910 34 21 1 chr9 29504012 29510040 -88352587 + L1PA2 LINE L1 1 6153 -2 864 92 0 0 chr9 29511101 29511242 -88351385 + (TC)n Simple_repeat Simple_repeat 2 142 0 432 0 0 0 chr9 29511241 29511289 -88351338 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 255 330 103 32 chr9 29512239 29512424 -88350203 - MIR SINE MIR -59 203 6 771 288 80 11 chr9 29512494 29512758 -88349869 - L3 LINE CR1 -21 1556 1275 22 35 0 0 chr9 29512849 29512878 -88349749 + AT_rich Low_complexity Low_complexity 1 29 0 696 237 137 14 chr9 29514014 29514233 -88348394 - MIR SINE MIR -4 258 13 212 267 0 40 chr9 29514229 29514304 -88348323 + L2 LINE L2 3236 3307 -6 * 308 281 94 23 chr9 29514516 29514644 -88347983 + MIR SINE MIR 106 242 -20 410 359 28 38 chr9 29515771 29516024 -88346603 + MIR SINE MIR 8 260 -2 491 138 38 0 chr9 29516495 29516575 -88346052 - Tigger7 DNA MER2_type -48 2439 2357 2552 168 95 6 chr9 29516803 29517308 -88345319 + MER44D DNA MER2_type 1 605 0 341 204 46 125 chr9 29517332 29517484 -88345143 + MER112 DNA MER1_type 120 259 -1 285 222 43 103 chr9 29517694 29517811 -88344816 - MIR SINE MIR -82 180 71 193 259 65 111 chr9 29517898 29518006 -88344621 - MER5A DNA MER1_type -22 167 65 366 183 0 0 chr9 29518082 29518153 -88344474 + (TG)n Simple_repeat Simple_repeat 2 72 0 2291 101 7 0 chr9 29518340 29518646 -88343981 - AluSp SINE Alu -5 308 1 472 259 117 25 chr9 29518954 29519116 -88343511 - MIR SINE MIR -65 197 21 186 227 0 0 chr9 29521641 29521685 -88340942 + T-rich Low_complexity Low_complexity 4 47 0 385 357 106 4 chr9 29522176 29522411 -88340216 - L3 LINE CR1 -87 1490 1232 33 25 0 0 chr9 29522607 29522647 -88339980 + AT_rich Low_complexity Low_complexity 1 40 0 920 255 90 65 chr9 29522881 29523415 -88339212 - HAL1 LINE L1 -230 2277 1731 1051 271 97 98 chr9 29523425 29524462 -88338165 - HAL1 LINE L1 -948 1559 522 2614 51 0 0 chr9 29524462 29524773 -88337854 - AluY SINE Alu 0 311 1 1051 271 97 98 chr9 29524773 29525294 -88337333 - HAL1 LINE L1 -1985 522 2 184 340 0 0 chr9 29525835 29525882 -88336745 - L3 LINE CR1 -471 1106 1060 1526 206 54 9 chr9 29527155 29527504 -88335123 - MLT1A1 LTR MaLR 0 365 1 183 100 0 0 chr9 29527947 29527977 -88334650 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 21 36 0 0 chr9 29527980 29528008 -88334619 + AT_rich Low_complexity Low_complexity 1 28 0 1935 185 34 42 chr9 29528224 29528695 -88333932 + L1MA7 LINE L1 5825 6291 0 23 33 0 0 chr9 29528929 29528959 -88333668 + AT_rich Low_complexity Low_complexity 1 30 0 2399 90 0 0 chr9 29529495 29529795 -88332832 + AluSq SINE Alu 1 300 -13 392 211 0 0 chr9 29529918 29529994 -88332633 - MIR SINE MIR -70 192 117 198 71 0 0 chr9 29530084 29530112 -88332515 + (TA)n Simple_repeat Simple_repeat 1 28 0 22 70 0 0 chr9 29530237 29530280 -88332347 + AT_rich Low_complexity Low_complexity 1 43 0 230 308 26 0 chr9 29530624 29530702 -88331925 - MIR SINE MIR -106 156 77 429 20 0 0 chr9 29530967 29531017 -88331610 + (CA)n Simple_repeat Simple_repeat 2 51 0 374 352 55 36 chr9 29531116 29531517 -88331110 + ERVL LTR ERVL 4250 4617 -868 * 637 345 35 60 chr9 29531515 29532135 -88330492 + ERVL LTR ERVL 4719 5323 -441 237 33 0 0 chr9 29532137 29532167 -88330460 + (GAGAA)n Simple_repeat Simple_repeat 2 31 0 461 284 38 33 chr9 29532371 29532554 -88330073 + LTR16A1 LTR ERVL 60 243 -214 278 284 14 14 chr9 29532561 29532635 -88329992 + LTR16A LTR ERVL 363 436 -14 187 316 18 18 chr9 29532668 29532725 -88329902 - MIR SINE MIR -195 67 11 23 0 0 0 chr9 29532952 29532975 -88329652 + AT_rich Low_complexity Low_complexity 1 23 0 385 203 0 0 chr9 29532975 29533044 -88329583 + Tigger2 DNA MER2_type 1 69 -2649 * 2448 158 37 14 chr9 29533034 29533470 -88329157 + Tigger2 DNA MER2_type 2273 2718 0 35 71 0 0 chr9 29534944 29535014 -88327613 + AT_rich Low_complexity Low_complexity 1 70 0 472 335 37 20 chr9 29535489 29535734 -88326893 + L3 LINE CR1 945 1193 -384 323 248 93 47 chr9 29535907 29536036 -88326591 + MER58B DNA MER1_type 207 341 0 245 100 20 0 chr9 29537078 29537128 -88325499 + (CAAAAA)n Simple_repeat Simple_repeat 1 51 0 716 270 99 4 chr9 29537843 29538076 -88324551 + MIR SINE MIR 2 256 -6 622 268 123 18 chr9 29538556 29538784 -88323843 + MIR SINE MIR 1 252 -10 333 0 0 0 chr9 29539132 29539169 -88323458 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr9 29540207 29540228 -88322399 + (TA)n Simple_repeat Simple_repeat 2 22 0 308 371 38 0 chr9 29540716 29540875 -88321752 - HAL1b LINE L1 -807 541 377 385 308 25 8 chr9 29540893 29541013 -88321614 - L2 LINE L2 -5 3267 3146 5003 101 43 73 chr9 29542899 29543749 -88318878 + LTR12 LTR ERV1 1 825 -1 932 49 81 0 chr9 29543750 29543873 -88318754 + LTR12 LTR ERV1 582 714 0 775 276 82 44 chr9 29544058 29544533 -88318094 - L1ME3A LINE L1 -281 5889 5397 408 337 57 5 chr9 29544568 29544761 -88317866 - L1MEd LINE L1 -5383 736 534 243 88 0 0 chr9 29544761 29544795 -88317832 + (TC)n Simple_repeat Simple_repeat 2 35 0 29 0 0 0 chr9 29545118 29545147 -88317480 + AT_rich Low_complexity Low_complexity 1 29 0 193 309 48 0 chr9 29545899 29545983 -88316644 - MIR SINE MIR 0 262 175 233 188 21 0 chr9 29546536 29546584 -88316043 + MIR SINE MIR 103 151 -111 361 272 32 24 chr9 29547035 29547160 -88315467 - L1ME2 LINE L1 -35 6129 6004 270 56 0 0 chr9 29547475 29547511 -88315116 + (TG)n Simple_repeat Simple_repeat 1 36 0 2052 121 13 0 chr9 29547804 29548102 -88314525 + AluSc SINE Alu 1 302 -7 351 322 72 7 chr9 29548227 29548379 -88314248 + MIR SINE MIR 29 190 -72 331 276 0 51 chr9 29548379 29548477 -88314150 - MER21B LTR ERV1 -427 436 344 618 204 53 8 chr9 29548497 29548629 -88313998 - MER21B LTR ERV1 -623 240 103 330 266 13 0 chr9 29548674 29548753 -88313874 - MER21B LTR ERV1 -767 96 17 237 333 94 38 chr9 29548871 29549030 -88313597 - MIR SINE MIR -75 187 20 296 216 78 39 chr9 29549046 29549148 -88313479 - L2 LINE L2 -17 3296 3191 272 224 9 93 chr9 29549187 29549294 -88313333 - MIR SINE MIR -62 200 103 1382 266 70 36 chr9 29549579 29549996 -88312631 + LTR16C LTR ERVL 61 491 0 278 297 0 0 chr9 29550320 29550394 -88312233 + CT-rich Low_complexity Low_complexity 2 75 0 373 296 0 53 chr9 29552032 29552184 -88310443 - MIR SINE MIR -5 257 114 23 33 0 0 chr9 29552211 29552241 -88310386 + AT_rich Low_complexity Low_complexity 1 30 0 485 335 49 40 chr9 29552271 29552300 -88310327 - L2 LINE L2 -277 3036 3009 2480 57 0 0 chr9 29552300 29552598 -88310029 + AluY SINE Alu 1 298 -13 485 335 49 40 chr9 29552598 29552792 -88309835 - L2 LINE L2 -304 3009 2811 1057 166 67 46 chr9 29553176 29553233 -88309394 - L1MA8 LINE L1 0 6291 6237 267 31 0 0 chr9 29553233 29553265 -88309362 + (TA)n Simple_repeat Simple_repeat 1 32 0 1057 166 67 46 chr9 29553265 29553421 -88309206 - L1MA8 LINE L1 -54 6237 6068 2489 66 0 0 chr9 29553421 29553724 -88308903 - AluY SINE Alu -8 303 1 1057 166 67 46 chr9 29553724 29553793 -88308834 - L1MA8 LINE L1 -223 6068 6002 427 248 29 15 chr9 29555088 29555225 -88307402 + L1ME LINE L1 5546 5684 -437 311 226 34 20 chr9 29555384 29555524 -88307103 + L1ME LINE L1 5313 5453 -668 182 335 4 29 chr9 29556057 29556185 -88306442 + MIR SINE MIR 2 92 -116 854 280 14 0 chr9 29556186 29556393 -88306234 - MER63A DNA MER1_type 0 210 1 6294 82 8 1 chr9 29557040 29557901 -88304726 - L1PA8A LINE L1 0 6131 5265 239 143 41 0 chr9 29558437 29558486 -88304141 + CT-rich Low_complexity Low_complexity 4 54 0 436 287 127 33 chr9 29558761 29558942 -88303685 + MIR SINE MIR 3 206 -56 880 303 71 12 chr9 29559009 29559349 -88303278 + LTR33 LTR ERVL 4 363 -158 23 54 0 0 chr9 29560240 29560277 -88302350 + AT_rich Low_complexity Low_complexity 1 37 0 243 0 0 0 chr9 29560778 29560805 -88301822 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr9 29560884 29560912 -88301715 + AT_rich Low_complexity Low_complexity 1 28 0 1811 126 23 0 chr9 29562034 29562295 -88300332 + AluSx SINE Alu 1 267 -45 200 222 0 0 chr9 29562947 29562992 -88299635 + (TA)n Simple_repeat Simple_repeat 1 45 0 245 331 0 24 chr9 29563037 29563161 -88299466 + GA-rich Low_complexity Low_complexity 2 122 0 253 307 79 79 chr9 29564000 29564228 -88298399 + MIR SINE MIR 34 261 -1 2464 42 3 0 chr9 29564350 29564660 -88297967 + L1PA4 LINE L1 5845 6155 0 297 0 0 0 chr9 29565498 29565531 -88297096 + (TG)n Simple_repeat Simple_repeat 1 33 0 346 235 61 0 chr9 29565636 29565734 -88296893 - MIR3 SINE MIR 0 208 105 414 228 14 17 chr9 29565753 29566046 -88296581 + GA-rich Low_complexity Low_complexity 1 292 0 185 0 0 39 chr9 29566051 29566077 -88296550 + (GGAAA)n Simple_repeat Simple_repeat 5 29 0 2044 211 48 80 chr9 29567209 29567829 -88294798 - L1MB5 LINE L1 0 6183 5515 1568 109 4 21 chr9 29567829 29568067 -88294560 - L1PB3 LINE L1 -7 6147 5914 2044 211 48 80 chr9 29568067 29568277 -88294350 - L1MB5 LINE L1 -668 5515 5300 1040 208 15 30 chr9 29568275 29568539 -88294088 + L1 LINE L1 4123 4382 -1764 * 2407 151 7 20 chr9 29568685 29569140 -88293487 + Tigger2 DNA MER2_type 1 2718 0 277 340 11 0 chr9 29569369 29569463 -88293164 + MIR3 SINE MIR 60 154 -54 36 40 0 0 chr9 29569794 29569844 -88292783 + AT_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr9 29570231 29570260 -88292367 + AT_rich Low_complexity Low_complexity 1 29 0 311 318 53 25 chr9 29570700 29570945 -88291682 + L1ME4a LINE L1 5643 5894 -227 393 337 69 29 chr9 29571168 29571414 -88291213 + L2 LINE L2 2621 2876 -438 197 208 104 0 chr9 29571691 29571739 -88290888 + L2 LINE L2 3261 3313 0 278 370 90 32 chr9 29573514 29573792 -88288835 + L2 LINE L2 3020 3313 0 360 222 113 113 chr9 29574106 29574153 -88288474 + MIR SINE MIR 57 103 -159 2125 117 0 0 chr9 29574153 29574452 -88288175 - AluSg SINE Alu -9 301 3 360 222 113 113 chr9 29574452 29574598 -88288029 + MIR SINE MIR 102 250 -12 240 287 128 49 chr9 29575240 29575404 -88287223 - MIR SINE MIR -71 191 15 26 30 0 0 chr9 29575694 29575727 -88286900 + AT_rich Low_complexity Low_complexity 1 33 0 4589 199 37 25 chr9 29576989 29577420 -88285207 + L1MB3 LINE L1 4275 4699 -1484 887 276 44 0 chr9 29577420 29577645 -88284982 + MER8 DNA MER2_type 4 238 -1 4589 199 37 25 chr9 29577645 29579084 -88283543 + L1MB3 LINE L1 4699 6176 -7 1069 294 58 27 chr9 29580025 29580508 -88282119 + MLT1H LTR MaLR 7 547 -2 463 349 68 5 chr9 29580703 29580895 -88281732 + MIR SINE MIR 2 205 -57 438 164 39 8 chr9 29581109 29581237 -88281390 + (TA)n Simple_repeat Simple_repeat 1 132 0 437 273 148 0 chr9 29581238 29581414 -88281213 - MIR SINE MIR -59 203 2 207 278 21 93 chr9 29582996 29583093 -88279534 - L2 LINE L2 -6 3266 3177 486 314 126 18 chr9 29583286 29583509 -88279118 - MIR SINE MIR -13 249 3 339 318 58 40 chr9 29584589 29584762 -88277865 + MIR SINE MIR 15 190 -72 189 0 0 0 chr9 29585987 29586008 -88276619 + (TG)n Simple_repeat Simple_repeat 1 21 0 1445 264 55 66 chr9 29586557 29586907 -88275720 - MLT1F1 LTR MaLR -2 565 197 378 0 0 0 chr9 29586907 29586949 -88275678 + (GA)n Simple_repeat Simple_repeat 1 42 0 1445 264 55 66 chr9 29586949 29587144 -88275483 - MLT1F1 LTR MaLR -370 197 1 34 65 0 0 chr9 29588250 29588312 -88274315 + AT_rich Low_complexity Low_complexity 1 62 0 4097 93 44 58 chr9 29589448 29589792 -88272835 + L1PB2 LINE L1 5433 5780 -371 303 28 0 0 chr9 29589792 29589828 -88272799 + (TC)n Simple_repeat Simple_repeat 2 37 0 4097 93 44 58 chr9 29589828 29590212 -88272415 + L1PB2 LINE L1 5780 6151 0 818 198 6 73 chr9 29590233 29590410 -88272217 + LTR69 LTR ERVL 322 486 -102 22 0 0 0 chr9 29592097 29592119 -88270508 + AT_rich Low_complexity Low_complexity 1 22 0 485 279 86 41 chr9 29592241 29592299 -88270328 - LTR33 LTR ERVL -7 514 460 2376 50 0 0 chr9 29592299 29592634 -88269993 - AluY SINE Alu 0 335 1 485 279 86 41 chr9 29592634 29592843 -88269784 - LTR33 LTR ERVL -61 460 234 2480 206 27 24 chr9 29592887 29593400 -88269227 + MLT2B3 LTR ERVL 1 518 -36 525 115 0 0 chr9 29593400 29593487 -88269140 + (CA)n Simple_repeat Simple_repeat 2 88 0 2480 206 27 24 chr9 29593487 29593522 -88269105 + MLT2B3 LTR ERVL 518 551 -3 2535 206 47 4 chr9 29594056 29594550 -88268077 + MLT2B2 LTR ERVL 1 515 0 228 134 0 90 chr9 29594682 29594749 -88267878 - LTR66 LTR ERVL -152 458 398 342 174 59 14 chr9 29594764 29595106 -88267521 + (TA)n Simple_repeat Simple_repeat 1 357 0 229 215 0 97 chr9 29595115 29595208 -88267419 + L1MC4 LINE L1 6659 6742 -1300 751 269 152 25 chr9 29595213 29595309 -88267318 + MLT1I LTR MaLR 3 85 -324 1763 167 162 8 chr9 29595309 29595680 -88266947 + MSTA LTR MaLR 1 428 0 751 269 152 25 chr9 29595680 29595944 -88266683 + MLT1I LTR MaLR 85 409 0 23 0 0 0 chr9 29596028 29596051 -88266576 + AT_rich Low_complexity Low_complexity 1 23 0 704 210 90 23 chr9 29596812 29597081 -88265546 + MSTD LTR MaLR 1 303 -62 342 0 0 0 chr9 29597129 29597167 -88265460 + (T)n Simple_repeat Simple_repeat 1 38 0 232 315 228 20 chr9 29597333 29597482 -88265145 - MER5A DNA MER1_type -3 186 7 240 206 20 59 chr9 29598114 29598216 -88264411 - L1ME4a LINE L1 -47 6074 5977 455 148 0 11 chr9 29598268 29598356 -88264271 + L1MA7 LINE L1 6203 6289 -2 4829 203 103 91 chr9 29599162 29600895 -88261732 + MER52A LTR ERV1 3 1755 0 318 222 173 0 chr9 29600920 29601001 -88261626 - MIR SINE MIR -155 107 13 227 227 182 45 chr9 29602271 29602359 -88260268 + MIR SINE MIR 8 107 -155 620 317 77 84 chr9 29602384 29603006 -88259621 + L2 LINE L2 2462 3073 -199 1809 202 34 8 chr9 29603068 29603424 -88259203 + MLT1A1 LTR MaLR 1 365 0 324 180 0 0 chr9 29603449 29603499 -88259128 + FLAM SINE Alu 75 124 -9 350 324 227 45 chr9 29603685 29604148 -88258479 + L3 LINE CR1 364 910 -667 378 0 0 0 chr9 29604910 29604952 -88257675 + (TG)n Simple_repeat Simple_repeat 2 43 0 295 360 70 17 chr9 29606046 29606218 -88256409 + MER5A DNA MER1_type 1 181 -8 373 272 19 19 chr9 29608260 29608422 -88254205 - MER103 DNA DNA -2 164 3 193 324 101 73 chr9 29608562 29608781 -88253846 - L2 LINE L2 -218 3054 2830 393 299 109 0 chr9 29609014 29609161 -88253466 - L2 LINE L2 -1 3312 3150 184 400 11 0 chr9 29609482 29609577 -88253050 - L2 LINE L2 -557 2757 2662 321 253 0 13 chr9 29609594 29609673 -88252954 - MARNA DNA Mariner -123 463 386 205 146 42 0 chr9 29610444 29610492 -88252135 + (TA)n Simple_repeat Simple_repeat 2 51 0 197 408 11 45 chr9 29611540 29611807 -88250820 + L2 LINE L2 2714 2971 -343 391 307 167 5 chr9 29611973 29612165 -88250462 - MIR SINE MIR -13 249 27 1313 165 34 88 chr9 29613305 29613602 -88249025 - AluJo SINE Alu -25 287 7 185 245 0 20 chr9 29615167 29615216 -88247411 - MIR SINE MIR -59 203 156 181 152 121 0 chr9 29615346 29615379 -88247248 - L2 LINE L2 -9 3263 3227 207 357 47 62 chr9 29615477 29615606 -88247021 + L2 LINE L2 3146 3272 0 453 284 39 44 chr9 29617735 29617939 -88244688 - MIR SINE MIR -54 208 6 216 0 0 0 chr9 29618292 29618316 -88244311 + (A)n Simple_repeat Simple_repeat 1 24 0 254 333 15 59 chr9 29618557 29618692 -88243935 - MIR3 SINE MIR -11 197 69 317 301 9 18 chr9 29618914 29619027 -88243600 - MER94 DNA DNA -15 119 8 6325 131 27 9 chr9 29620665 29620747 -88241880 + L1MA3 LINE L1 5069 5148 -1157 1993 217 150 43 chr9 29620747 29621493 -88241134 - LTR1B LTR ERV1 0 826 1 6325 131 27 9 chr9 29621493 29622628 -88239999 + L1MA3 LINE L1 5148 6305 0 2200 78 0 7 chr9 29622921 29623204 -88239423 - AluY SINE Alu -30 281 1 36 23 0 0 chr9 29623515 29623558 -88239069 + AT_rich Low_complexity Low_complexity 1 43 0 252 264 14 14 chr9 29624460 29624532 -88238095 + L1M4c LINE L1 -782 4294966585 -7094 4219 231 19 28 chr9 29624641 29625875 -88236752 + L1M4c LINE L1 777 1904 -4480 339 222 30 20 chr9 29625920 29626019 -88236608 + L1M4c LINE L1 2036 2135 -4249 603 194 15 0 chr9 29626020 29626154 -88236473 + L1MB3 LINE L1 6048 6183 0 350 183 63 7 chr9 29626727 29626869 -88235758 + (TA)n Simple_repeat Simple_repeat 1 150 0 1168 209 105 51 chr9 29627019 29627449 -88235178 - MSTB2 LTR MaLR 0 457 5 586 244 118 33 chr9 29627456 29627726 -88234901 + L1ME3A LINE L1 5406 5698 -464 929 240 65 25 chr9 29627755 29628080 -88234547 + L1ME3A LINE L1 5810 6147 -23 273 57 0 0 chr9 29629289 29629324 -88233303 + (CA)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr9 29629924 29629946 -88232681 + AT_rich Low_complexity Low_complexity 1 22 0 602 254 133 21 chr9 29630665 29630944 -88231683 + MER5C DNA MER1_type 15 324 0 243 319 80 9 chr9 29631292 29631405 -88231222 + MIR SINE MIR 94 214 -48 276 331 62 19 chr9 29631453 29631613 -88231014 - MIR SINE MIR -18 244 78 2419 28 0 0 chr9 29632148 29632452 -88230175 - AluY SINE Alu 0 304 1 186 365 0 0 chr9 29633029 29633092 -88229535 + L2 LINE L2 2262 2324 -990 * 688 289 72 20 chr9 29633089 29633338 -88229289 - MIR SINE MIR 0 262 1 548 326 179 18 chr9 29633342 29633799 -88228828 + L2 LINE L2 2330 2860 -454 239 297 14 14 chr9 29633880 29633954 -88228673 + L2 LINE L2 2989 3062 -251 378 307 117 6 chr9 29634236 29634399 -88228228 - MER5A DNA MER1_type 0 189 9 251 219 122 12 chr9 29634956 29635038 -88227589 - MIR SINE MIR 0 262 172 342 0 0 0 chr9 29635723 29635761 -88226866 + (TG)n Simple_repeat Simple_repeat 1 38 0 468 139 0 0 chr9 29635761 29635840 -88226787 + (TA)n Simple_repeat Simple_repeat 1 79 0 224 363 41 47 chr9 29637102 29637273 -88225354 - MIR SINE MIR -67 195 26 257 0 30 0 chr9 29637480 29637513 -88225114 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 7640 24 0 0 chr9 29637513 29638568 -88224059 - L1PA3 LINE L1 -13 6142 5088 2050 36 0 0 chr9 29638568 29638815 -88223812 + L1PA3 LINE L1 4837 5083 -1063 190 318 63 0 chr9 29640055 29640118 -88222509 - L3 LINE CR1 -5 1572 1506 856 263 42 70 chr9 29640192 29640504 -88222123 - L3 LINE CR1 -179 1398 1096 374 308 82 14 chr9 29640811 29640957 -88221670 + MIR3 SINE MIR 20 175 -33 205 368 38 38 chr9 29641146 29641279 -88221348 - L2 LINE L2 -8 3264 3132 258 333 0 0 chr9 29642394 29642466 -88220161 + (TATG)n Simple_repeat Simple_repeat 2 73 0 24 0 0 0 chr9 29642664 29642688 -88219939 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr9 29644241 29644283 -88218344 + AT_rich Low_complexity Low_complexity 1 42 0 516 321 65 11 chr9 29644341 29644525 -88218102 + MIR SINE MIR 1 194 -68 1507 145 4 4 chr9 29645119 29645347 -88217280 - AluSx SINE Alu -84 228 1 2125 109 7 7 chr9 29645495 29645798 -88216829 + AluSc SINE Alu 1 303 -6 283 292 46 82 chr9 29646169 29646364 -88216263 + MER5A DNA MER1_type 2 189 0 243 286 78 13 chr9 29646364 29646441 -88216186 - MIR SINE MIR -153 109 28 456 344 20 29 chr9 29646587 29646831 -88215796 + L1MC/D LINE L1 5496 5737 -2071 1189 224 60 10 chr9 29646957 29647405 -88215222 - MLT1D LTR MaLR 0 505 1 180 0 0 0 chr9 29648710 29648730 -88213897 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3197 106 4 4 chr9 29649499 29649952 -88212675 + MLT2A2 LTR ERVL 1 453 0 392 120 13 13 chr9 29650010 29650085 -88212542 + MADE1 DNA Mariner 6 80 0 7142 53 3 0 chr9 29650097 29651523 -88211104 - L1PA5 LINE L1 -4 6150 4725 22819 77 2 0 chr9 29651523 29654683 -88207944 - L1PA5 LINE L1 -2982 3164 1 25 0 0 0 chr9 29654797 29654822 -88207805 + AT_rich Low_complexity Low_complexity 1 25 0 479 307 104 10 chr9 29655407 29655599 -88207028 + MIR SINE MIR 41 250 -12 2309 96 0 0 chr9 29706631 29706924 -88155703 - AluSx SINE Alu -11 301 9 31 58 0 0 chr9 29706930 29706982 -88155645 + AT_rich Low_complexity Low_complexity 1 52 0 306 323 30 37 chr9 29707292 29707456 -88155171 + MIR SINE MIR 79 241 -21 342 0 0 0 chr9 29708815 29708853 -88153774 + (ATG)n Simple_repeat Simple_repeat 2 39 0 2025 128 0 0 chr9 29708854 29709136 -88153491 - AluSx SINE Alu -30 282 1 199 271 57 14 chr9 29710048 29710118 -88152509 + MIR SINE MIR 182 254 -8 23 0 0 0 chr9 29710132 29710155 -88152472 + AT_rich Low_complexity Low_complexity 1 23 0 2153 158 30 32 chr9 29710722 29711160 -88151467 - L1PA15 LINE L1 -5 6160 5724 24 32 0 0 chr9 29712372 29712403 -88150224 + AT_rich Low_complexity Low_complexity 1 31 0 36 40 0 0 chr9 29712415 29712465 -88150162 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr9 29712738 29712760 -88149867 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr9 29713417 29713454 -88149173 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr9 29714021 29714042 -88148585 + AT_rich Low_complexity Low_complexity 1 21 0 312 333 17 64 chr9 29714669 29714753 -88147874 + L3 LINE CR1 1092 1178 -399 1957 154 7 0 chr9 29714753 29715058 -88147569 - AluSx SINE Alu -3 309 3 312 333 17 64 chr9 29715058 29715207 -88147420 + L3 LINE CR1 1178 1314 -263 25 31 0 0 chr9 29715574 29715606 -88147021 + AT_rich Low_complexity Low_complexity 1 32 0 278 312 115 6 chr9 29715732 29715889 -88146738 + MIR SINE MIR 13 186 -76 2377 77 3 0 chr9 29716330 29716630 -88145997 + AluSq SINE Alu 1 301 -12 212 281 220 83 chr9 29717431 29717483 -88145144 - L2 LINE L2 0 3313 3270 345 109 0 0 chr9 29717483 29717538 -88145089 + (TA)n Simple_repeat Simple_repeat 2 56 0 212 281 220 83 chr9 29717538 29717798 -88144829 - L2 LINE L2 -43 3270 2958 1981 134 0 7 chr9 29719045 29719350 -88143277 + AluSx SINE Alu 1 303 -9 678 293 40 0 chr9 29719734 29719908 -88142719 - MIR SINE MIR -9 253 73 825 281 96 65 chr9 29721022 29721513 -88141114 - MLT1H LTR MaLR -32 517 12 21 0 0 0 chr9 29721984 29722005 -88140622 + AT_rich Low_complexity Low_complexity 1 21 0 210 244 17 61 chr9 29722116 29722231 -88140396 + T-rich Low_complexity Low_complexity 1 110 0 251 287 67 70 chr9 29722494 29722767 -88139860 - L1M4c LINE L1 -4608 1955 1682 1741 177 30 7 chr9 29722767 29723072 -88139555 + AluJo SINE Alu 1 312 0 251 287 67 70 chr9 29723072 29723341 -88139286 - L1M4c LINE L1 -4881 1682 1265 808 222 87 14 chr9 29723448 29723723 -88138904 - L1MC4 LINE L1 -13 8029 7735 266 153 119 17 chr9 29723727 29723786 -88138841 - MLT1F LTR MaLR 0 542 441 4531 249 27 9 chr9 29723811 29725198 -88137429 + L1M4 LINE L1 2170 3581 -2565 558 208 27 7 chr9 29725201 29725350 -88137277 + L1MB3 LINE L1 6032 6183 0 1104 256 193 12 chr9 29725367 29725797 -88136830 - MLT1F1 LTR MaLR -52 515 8 1301 217 122 60 chr9 29725802 29726285 -88136342 - L1MC4 LINE L1 -306 7736 7224 2424 124 8 21 chr9 29726591 29726971 -88135656 - THE1C LTR MaLR 0 375 1 1729 120 4 4 chr9 29726971 29727229 -88135398 - THE1C-int LTR MaLR 0 1580 1323 922 159 16 23 chr9 29727229 29727457 -88135170 - THE1C LTR MaLR -71 293 1 315 335 27 8 chr9 29727622 29727811 -88134816 - MIR SINE MIR -17 245 9 293 345 176 7 chr9 29727891 29728033 -88134594 - MIR3 SINE MIR -12 196 31 375 261 73 111 chr9 29729041 29729382 -88133245 + MLT1I LTR MaLR 46 373 -36 2101 99 27 3 chr9 29731315 29731607 -88131020 - AluY SINE Alu -12 299 1 22 0 0 0 chr9 29732726 29732748 -88129879 + AT_rich Low_complexity Low_complexity 1 22 0 340 302 201 0 chr9 29733009 29733168 -88129459 + MIR SINE MIR 8 198 -64 204 211 0 0 chr9 29733211 29733249 -88129378 + (CTA)n Simple_repeat Simple_repeat 1 38 0 240 111 0 0 chr9 29734604 29734640 -88127987 + (A)n Simple_repeat Simple_repeat 1 36 0 425 352 28 20 chr9 29736393 29736643 -88125984 - MIR SINE MIR -2 260 9 22 0 0 0 chr9 29737649 29737671 -88124956 + AT_rich Low_complexity Low_complexity 1 22 0 6041 152 26 18 chr9 29737687 29739555 -88123072 - L1MA2 LINE L1 -12 6292 4408 25 31 0 0 chr9 29740393 29740425 -88122202 + AT_rich Low_complexity Low_complexity 1 32 0 213 39 0 0 chr9 29740426 29740452 -88122175 + (CA)n Simple_repeat Simple_repeat 1 26 0 2411 55 0 10 chr9 29741180 29741472 -88121155 + AluY SINE Alu 1 289 -22 35204 49 2 1 chr9 29741473 29746703 -88115924 + L1PA5 LINE L1 934 6165 0 23 54 0 0 chr9 29746870 29746907 -88115720 + AT_rich Low_complexity Low_complexity 1 37 0 468 257 139 46 chr9 29747289 29747526 -88115101 - MLT1K LTR MaLR -10 578 320 2217 125 3 0 chr9 29747730 29748042 -88114585 + AluSq SINE Alu 1 313 0 234 296 51 41 chr9 29748649 29748747 -88113880 - L2 LINE L2 0 3313 3215 2511 119 19 41 chr9 29749210 29749602 -88113025 + MLT2A1 LTR ERVL 1 385 -59 288 0 0 0 chr9 29749602 29749634 -88112993 + (TC)n Simple_repeat Simple_repeat 2 33 0 2511 119 19 41 chr9 29749634 29749654 -88112973 + MLT2A1 LTR ERVL 385 404 -40 594 143 28 12 chr9 29749665 29749995 -88112632 + (TA)n Simple_repeat Simple_repeat 1 335 0 264 53 0 26 chr9 29750008 29750046 -88112581 + MLT2A1 LTR ERVL 417 453 0 274 291 152 89 chr9 29750342 29750644 -88111983 + L2 LINE L2 2952 3272 0 278 344 27 38 chr9 29750653 29750839 -88111788 + MER117 DNA MER1_type 10 193 -4 1495 70 25 0 chr9 29750951 29751152 -88111475 + L1PA5 LINE L1 4829 5034 -1112 1486 62 5 0 chr9 29751152 29751397 -88111230 + L1PA5 LINE L1 5944 6193 0 482 243 15 15 chr9 29751434 29751570 -88111057 - L1MD2 LINE L1 -13 6346 6211 995 26 0 0 chr9 29752295 29752412 -88110215 - L1PA2 LINE L1 -2 6153 6037 1868 26 4 0 chr9 29752412 29752638 -88109989 + L1PA2 LINE L1 5821 6047 -108 249 311 56 0 chr9 29753419 29753509 -88109118 + MIR SINE MIR 156 250 -12 22 0 0 0 chr9 29754576 29754598 -88108029 + AT_rich Low_complexity Low_complexity 1 22 0 519 326 120 13 chr9 29754825 29755141 -88107486 + L1ME LINE L1 61 410 -5986 554 282 91 18 chr9 29755487 29755827 -88106800 + L1ME LINE L1 810 1174 -5222 1207 246 153 13 chr9 29755859 29756498 -88106129 + L1ME LINE L1 4901 5681 -552 221 0 35 0 chr9 29756498 29756527 -88106100 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1207 246 153 13 chr9 29756527 29756617 -88106010 + L1ME LINE L1 5681 5757 -476 21 36 0 0 chr9 29756621 29756649 -88105978 + AT_rich Low_complexity Low_complexity 1 28 0 497 230 54 0 chr9 29756652 29756863 -88105764 + L1ME2 LINE L1 2315 5888 -347 23 33 0 0 chr9 29756891 29756921 -88105706 + AT_rich Low_complexity Low_complexity 1 30 0 4486 190 12 10 chr9 29756941 29757761 -88104866 + L1MA2 LINE L1 14 835 -6730 * 9157 146 23 24 chr9 29757759 29760494 -88102133 + L1MA2 LINE L1 4989 7723 0 346 151 35 81 chr9 29760530 29760616 -88102011 + Tigger1 DNA MER2_type 70 151 -2267 * 1198 136 41 18 chr9 29760613 29760834 -88101793 + Tigger1 DNA MER2_type 2192 2417 -1 385 194 102 174 chr9 29760905 29761198 -88101429 + L1ME2 LINE L1 5906 6177 -58 2223 97 0 0 chr9 29761524 29761835 -88100792 - L1PA13 LINE L1 -4 6159 5849 266 287 20 10 chr9 29763509 29763610 -88099017 - MIR SINE MIR -12 250 149 266 220 0 0 chr9 29763647 29763697 -88098930 - L2 LINE L2 0 3272 3223 753 325 114 20 chr9 29763851 29764359 -88098268 - L2 LINE L2 -435 2879 2324 2368 43 0 0 chr9 29764925 29765229 -88097398 + AluY SINE Alu 3 306 0 971 226 83 43 chr9 29766346 29766688 -88095939 - L1ME3A LINE L1 -5 6165 5811 22 35 0 0 chr9 29766949 29766978 -88095649 + AT_rich Low_complexity Low_complexity 1 29 0 434 267 35 0 chr9 29766995 29767111 -88095516 - L2 LINE L2 -3 3310 3191 408 266 143 19 chr9 29768455 29768609 -88094018 + MER58 DNA MER1_type 1 173 -2247 211 250 0 19 chr9 29769044 29769152 -88093475 + (TA)n Simple_repeat Simple_repeat 2 107 0 1867 141 35 40 chr9 29769288 29769665 -88092962 - THE1C LTR MaLR 0 375 1 2474 157 71 7 chr9 29769671 29770105 -88092522 - THE1C-int LTR MaLR -5 1575 1114 314 190 0 0 chr9 29770102 29770160 -88092467 + L1MA9 LINE L1 5722 5779 -521 * 1249 239 17 3 chr9 29770160 29770449 -88092178 + AluJo SINE Alu 5 297 -15 378 62 0 0 chr9 29770451 29770499 -88092128 + AluY SINE Alu 3 50 -258 1500 78 0 0 chr9 29770499 29770734 -88091893 + AluY SINE Alu 102 311 0 2407 166 33 55 chr9 29770764 29771146 -88091481 + L1MA9 LINE L1 5783 6151 -161 198 0 0 0 chr9 29771146 29771168 -88091459 + (CA)n Simple_repeat Simple_repeat 1 22 0 2407 166 33 55 chr9 29771168 29771327 -88091300 + L1MA9 LINE L1 6151 6312 0 1098 232 27 59 chr9 29771759 29772134 -88090493 - MLT1A1 LTR MaLR 0 365 3 502 335 116 61 chr9 29772431 29773136 -88089491 - L1MC4a LINE L1 -161 6009 5266 21 57 0 0 chr9 29773327 29773362 -88089265 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr9 29774202 29774237 -88088390 + AT_rich Low_complexity Low_complexity 1 35 0 296 282 56 80 chr9 29774694 29774907 -88087720 + MLT1K LTR MaLR 166 373 -215 493 293 145 4 chr9 29775138 29775387 -88087240 - Charlie7 DNA MER1_type -2292 320 37 905 213 33 9 chr9 29776587 29776798 -88085829 - MER58A DNA MER1_type -8 216 1 821 210 93 40 chr9 29777162 29777462 -88085165 - MER33 DNA MER1_type -7 317 2 284 274 301 27 chr9 29777462 29777648 -88084979 + MIR SINE MIR 8 244 -18 322 247 24 12 chr9 29779131 29779216 -88083411 - L2 LINE L2 0 3313 3228 207 0 0 0 chr9 29780190 29780213 -88082414 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 725 245 101 32 chr9 29780260 29780538 -88082089 + LTR16A1 LTR ERVL 159 455 -2 26 0 0 0 chr9 29781881 29781907 -88080720 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 29782685 29782706 -88079921 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 29782960 29782983 -88079644 + AT_rich Low_complexity Low_complexity 1 23 0 204 122 0 0 chr9 29784058 29784099 -88078528 + (T)n Simple_repeat Simple_repeat 1 41 0 1990 136 0 0 chr9 29784453 29784739 -88077888 + AluSx SINE Alu 1 286 -26 336 94 0 0 chr9 29784739 29784792 -88077835 + (CATA)n Simple_repeat Simple_repeat 2 54 0 204 364 23 11 chr9 29788754 29788842 -88073785 + MIR SINE MIR 13 101 -161 249 211 19 149 chr9 29789147 29789308 -88073319 + MIR SINE MIR 122 261 -1 744 327 75 42 chr9 29789760 29790212 -88072415 + MLT1K LTR MaLR 101 567 -21 257 287 96 11 chr9 29790286 29790380 -88072247 + MIR SINE MIR 107 208 -54 26 0 0 0 chr9 29791188 29791214 -88071413 + AT_rich Low_complexity Low_complexity 1 26 0 12958 32 0 3 chr9 29791331 29793419 -88069208 - L1PA4 LINE L1 -256 5899 3817 579 286 111 24 chr9 29795625 29796002 -88066625 + HAL1 LINE L1 2097 2506 -1 1646 164 124 0 chr9 29796449 29796772 -88065855 - MER47A DNA MER2_type -3 363 1 289 331 30 15 chr9 29796779 29796912 -88065715 + L1MEd LINE L1 455 589 -5530 280 217 86 59 chr9 29796914 29797066 -88065561 + MER53 DNA DNA 1 156 -33 690 0 0 34 chr9 29797166 29797255 -88065372 + AluY SINE Alu 218 303 -8 1232 239 66 37 chr9 29798026 29798407 -88064220 - MSTD LTR MaLR 0 396 5 189 367 135 32 chr9 29803273 29803644 -88058983 + L2 LINE L2 2824 3232 -40 3187 169 38 63 chr9 29803752 29804496 -88058131 - LTR8A LTR ERV1 0 727 3 380 204 0 0 chr9 29804625 29804713 -88057914 + L1PB1 LINE L1 6060 6147 -4 2206 199 2 7 chr9 29805021 29805437 -88057190 + MER47B DNA MER2_type 5 418 0 240 35 0 0 chr9 29805469 29805498 -88057129 + (TG)n Simple_repeat Simple_repeat 2 30 0 2120 156 8 77 chr9 29805715 29805999 -88056628 - L1PA16 LINE L1 -6 6160 5923 2110 95 20 3 chr9 29805999 29806304 -88056323 - AluSg SINE Alu 0 310 1 2120 156 8 77 chr9 29806304 29806514 -88056113 - L1PA16 LINE L1 -243 5923 5700 303 287 88 22 chr9 29806533 29806669 -88055958 - MIR3 SINE MIR -32 176 32 302 305 48 19 chr9 29809590 29809695 -88052932 + L2 LINE L2 3204 3311 -2 552 310 39 0 chr9 29809794 29809949 -88052678 + MIR SINE MIR 49 209 -53 4892 169 29 15 chr9 29811480 29812469 -88050158 - L1MA9 LINE L1 0 6312 5310 1386 263 21 5 chr9 29812504 29812926 -88049701 - L1M2 LINE L1 -4171 2678 2250 1336 171 4 12 chr9 29812943 29813200 -88049427 - L1PA13 LINE L1 -15 6148 5894 699 236 12 19 chr9 29813207 29813368 -88049259 - L1M2 LINE L1 -5979 800 641 288 0 0 0 chr9 29813599 29813631 -88048996 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3665 176 3 11 chr9 29813631 29814283 -88048344 - L1PA16 LINE L1 -24 6142 5496 2333 46 0 11 chr9 29815579 29815863 -88046764 + AluY SINE Alu 8 288 -23 28 0 0 0 chr9 29815910 29815938 -88046689 + AT_rich Low_complexity Low_complexity 1 28 0 2037 86 11 4 chr9 29815944 29816213 -88046414 + AluY SINE Alu 4 274 -37 784 206 111 5 chr9 29816511 29816700 -88045927 + MER3 DNA MER1_type 1 209 0 492 301 0 47 chr9 29818128 29818280 -88044347 + MIR SINE MIR 15 154 -108 1989 124 3 0 chr9 29818280 29818600 -88044027 + AluSx SINE Alu 1 321 0 492 301 0 47 chr9 29818600 29818655 -88043972 + MIR SINE MIR 154 210 -52 219 88 0 0 chr9 29818934 29818968 -88043659 + (T)n Simple_repeat Simple_repeat 1 34 0 313 247 0 52 chr9 29819647 29819744 -88042883 - L1MC4 LINE L1 -1339 6703 6612 366 97 80 0 chr9 29819748 29819861 -88042766 + (TA)n Simple_repeat Simple_repeat 1 122 0 26 0 0 0 chr9 29819899 29819925 -88042702 + AT_rich Low_complexity Low_complexity 1 26 0 1790 158 0 27 chr9 29820451 29820748 -88041879 + AluJb SINE Alu 1 289 -23 26 30 0 0 chr9 29820748 29820781 -88041846 + AT_rich Low_complexity Low_complexity 1 33 0 1279 253 36 39 chr9 29820849 29821264 -88041363 - MLT2D LTR ERVL 0 414 1 889 328 70 37 chr9 29822699 29823214 -88039413 + HAL1 LINE L1 215 746 -1761 35097 37 1 0 chr9 29823268 29828348 -88034279 - L1PA2 LINE L1 -2 6153 1067 1361 271 147 71 chr9 29828350 29829906 -88032721 + HAL1 LINE L1 833 2507 0 231 264 23 11 chr9 29830630 29830717 -88031910 - L1ME LINE L1 -297 5873 5786 635 247 98 51 chr9 29830790 29831219 -88031408 + L1MEd LINE L1 702 1150 -4969 390 300 122 27 chr9 29831303 29831566 -88031061 + L1MEd LINE L1 1282 1569 -4741 361 300 76 34 chr9 29831782 29832086 -88030541 + L1ME LINE L1 5468 5777 -401 2186 124 0 0 chr9 29832695 29833002 -88029625 - AluSc SINE Alu -2 307 1 233 287 62 31 chr9 29833353 29833482 -88029145 + LTR67 LTR ERVL 410 542 -15 3571 156 98 3 chr9 29834573 29835219 -88027408 + MER39 LTR ERV1 1 707 0 468 115 10 7 chr9 29835305 29835393 -88027234 - L1MA8 LINE L1 -326 5976 5888 266 350 43 29 chr9 29835477 29835617 -88027010 + MIR SINE MIR 1 142 -120 204 299 27 102 chr9 29836335 29836482 -88026145 + MIR SINE MIR 117 252 -10 * 234 269 51 26 chr9 29836480 29836558 -88026069 + MIR3 SINE MIR 105 184 -24 211 91 55 36 chr9 29836631 29836686 -88025941 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 23 0 0 0 chr9 29836687 29836710 -88025917 + AT_rich Low_complexity Low_complexity 1 23 0 1867 168 7 0 chr9 29837194 29837503 -88025124 - AluSq SINE Alu -2 311 1 252 365 61 33 chr9 29838569 29838750 -88023877 + MER5A DNA MER1_type 3 188 -1 627 307 130 18 chr9 29839046 29839447 -88023180 + LTR16A LTR ERVL 3 448 -2 1660 174 0 7 chr9 29840864 29841139 -88021488 + AluJb SINE Alu 1 273 -39 330 67 0 0 chr9 29841139 29841184 -88021443 + (GA)n Simple_repeat Simple_repeat 1 45 0 373 315 56 0 chr9 29842071 29842179 -88020448 - L2 LINE L2 -3 3269 3156 22 56 0 0 chr9 29842448 29842484 -88020143 + AT_rich Low_complexity Low_complexity 1 36 0 1124 189 115 72 chr9 29842543 29842892 -88019735 + MLT1A1 LTR MaLR 1 364 -1 216 41 0 82 chr9 29843160 29843209 -88019418 + (TTTTA)n Simple_repeat Simple_repeat 5 49 0 275 306 41 8 chr9 29843303 29843424 -88019203 - L1MEc LINE L1 -4742 1568 1255 21 0 0 0 chr9 29843541 29843562 -88019065 + AT_rich Low_complexity Low_complexity 1 21 0 334 280 60 60 chr9 29843586 29843836 -88018791 - L1MEc LINE L1 -4898 1221 972 1896 222 24 17 chr9 29844109 29844573 -88018054 - MLT1C LTR MaLR 0 467 1 29 60 0 0 chr9 29845370 29845420 -88017207 + AT_rich Low_complexity Low_complexity 1 50 0 302 221 47 23 chr9 29845451 29845537 -88017090 - L1MEc LINE L1 -5785 334 247 233 256 12 0 chr9 29845680 29845762 -88016865 + (TG)n Simple_repeat Simple_repeat 1 83 0 411 311 61 20 chr9 29846133 29846429 -88016198 - L1ME4a LINE L1 -237 5884 5577 180 0 0 0 chr9 29846726 29846746 -88015881 + (CA)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr9 29846747 29846789 -88015838 + AT_rich Low_complexity Low_complexity 1 42 0 29 60 0 0 chr9 29846938 29846988 -88015639 + AT_rich Low_complexity Low_complexity 1 50 0 210 37 0 0 chr9 29847419 29847446 -88015181 + (TGG)n Simple_repeat Simple_repeat 1 27 0 682 294 132 0 chr9 29847811 29848039 -88014588 - MIR SINE MIR -4 258 1 186 406 24 32 chr9 29848161 29848284 -88014343 + L2 LINE L2 3149 3270 -2 574 336 69 42 chr9 29848725 29849205 -88013422 + L2 LINE L2 2537 3051 -221 707 305 47 8 chr9 29849270 29849506 -88013121 + MIR SINE MIR 6 250 -12 189 357 25 57 chr9 29849532 29849689 -88012938 + L2 LINE L2 3158 3309 -4 27 0 0 0 chr9 29849724 29849751 -88012876 + AT_rich Low_complexity Low_complexity 1 27 0 469 213 0 19 chr9 29850317 29850425 -88012202 - L1MA10 LINE L1 -7 6327 6222 29 0 0 0 chr9 29850457 29850486 -88012141 + AT_rich Low_complexity Low_complexity 1 29 0 4833 174 36 40 chr9 29850607 29851951 -88010676 - L1MA8 LINE L1 -6 6285 4937 223 295 162 48 chr9 29852748 29852853 -88009774 - MIR SINE MIR -71 137 21 228 147 0 0 chr9 29854625 29854659 -88007968 + L2 LINE L2 3264 3297 -16 2557 48 0 6 chr9 29854971 29855284 -88007343 - AluY SINE Alu 0 311 1 1705 125 9 92 chr9 29855284 29855612 -88007015 - AluSx SINE Alu -9 303 3 2940 126 7 2 chr9 29855616 29856070 -88006557 - L1PA15 LINE L1 0 6165 5710 270 0 0 0 chr9 29856773 29856803 -88005824 + (TG)n Simple_repeat Simple_repeat 1 30 0 794 261 51 114 chr9 29859732 29860161 -88002466 + MLT1E1 LTR MaLR 20 421 -172 6237 86 5 20 chr9 29860161 29861049 -88001578 + L1PA11 LINE L1 5301 6174 0 845 213 6 6 chr9 29861073 29861237 -88001390 + MLT1E1 LTR MaLR 491 654 0 22 0 0 0 chr9 29862500 29862522 -88000105 + AT_rich Low_complexity Low_complexity 1 22 0 214 353 98 21 chr9 29862597 29862832 -87999795 - MIR SINE MIR 0 262 10 2088 136 3 0 chr9 29862988 29863298 -87999329 + AluSq SINE Alu 1 311 -2 25 65 0 0 chr9 29863741 29863787 -87998840 + AT_rich Low_complexity Low_complexity 1 46 0 21 89 0 0 chr9 29865023 29865079 -87997548 + AT_rich Low_complexity Low_complexity 1 56 0 833 234 10 30 chr9 29865341 29865538 -87997089 - MIR SINE MIR -55 207 15 258 32 0 0 chr9 29865844 29865875 -87996752 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 484 274 62 111 chr9 29866110 29866479 -87996148 + L1ME LINE L1 5460 5671 -450 1355 169 20 102 chr9 29869420 29869567 -87993060 - L1MC1 LINE L1 0 6613 6456 1499 214 0 0 chr9 29869567 29869870 -87992757 + AluJo SINE Alu 13 315 0 1355 169 20 102 chr9 29869870 29870075 -87992552 - L1MC1 LINE L1 -157 6456 6289 4276 71 34 8 chr9 29870075 29871076 -87991551 + MER11A LTR ERVK 1 1266 0 8294 213 63 23 chr9 29871076 29875763 -87986864 - L1MC1 LINE L1 -320 6293 812 1402 177 8 8 chr9 29875765 29876013 -87986614 - AluJb SINE Alu -64 248 1 3923 192 30 26 chr9 29876014 29876811 -87985816 - L1MC1 LINE L1 -5599 827 28 197 295 77 0 chr9 29877914 29877992 -87984635 + L2 LINE L2 3229 3312 -1 445 49 62 0 chr9 29879558 29879639 -87982988 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 27 49 0 0 chr9 29880519 29880560 -87982067 + AT_rich Low_complexity Low_complexity 1 41 0 1884 211 11 0 chr9 29880839 29881200 -87981427 + MLT1A1 LTR MaLR 1 365 0 218 350 17 43 chr9 29881409 29881526 -87981101 + L2 LINE L2 2956 3069 -244 424 332 79 5 chr9 29882049 29882251 -87980376 + MIR SINE MIR 30 246 -16 277 342 97 0 chr9 29882482 29882637 -87979990 + MIR SINE MIR 74 243 -19 642 305 70 9 chr9 29883253 29883466 -87979161 + MIR SINE MIR 10 235 -27 2088 115 10 0 chr9 29883672 29883960 -87978667 - AluSg SINE Alu -19 291 1 621 271 42 10 chr9 29884140 29884332 -87978295 + MLT1J1 LTR MaLR 1 198 -248 2020 118 0 3 chr9 29884672 29884959 -87977668 + AluSq SINE Alu 1 286 -27 321 232 0 0 chr9 29884965 29885034 -87977593 - L1MC4 LINE L1 -1339 6703 6635 514 246 57 23 chr9 29885305 29885480 -87977147 + MLT1J1 LTR MaLR 255 435 -11 290 340 207 24 chr9 29889724 29890784 -87971843 + L2 LINE L2 1285 2538 -776 6196 66 19 1 chr9 29891806 29892628 -87969999 + L1PA8 LINE L1 5335 6171 -1 371 299 121 0 chr9 29893740 29893897 -87968730 + MER5B DNA MER1_type 3 178 0 486 281 166 0 chr9 29893911 29894050 -87968577 - MER5A DNA MER1_type 0 189 28 279 204 20 0 chr9 29894934 29894983 -87967644 + MIR3 SINE MIR 114 163 -45 * 284 292 77 42 chr9 29894980 29895148 -87967479 - MIR SINE MIR 0 262 89 27 62 0 0 chr9 29896089 29896137 -87966490 + AT_rich Low_complexity Low_complexity 1 48 0 494 282 60 44 chr9 29896842 29897090 -87965537 + Tigger8 DNA MER2_type 60 311 -355 355 329 7 0 chr9 29897214 29897351 -87965276 + Tigger8 DNA MER2_type 390 527 -139 2268 93 0 10 chr9 29898081 29898382 -87964245 - AluY SINE Alu -13 298 1 1587 278 151 44 chr9 29899798 29901095 -87961532 + HAL1 LINE L1 446 1881 -626 3306 186 105 102 chr9 29901161 29901789 -87960838 + L1MD2 LINE L1 5074 5699 -660 2230 102 7 0 chr9 29901789 29902083 -87960544 - AluSp SINE Alu -17 296 1 3306 186 105 102 chr9 29902083 29902703 -87959924 + L1MD2 LINE L1 5699 6330 -29 280 354 38 19 chr9 29902849 29903058 -87959569 + L1MEd LINE L1 335 547 -5572 588 282 5 61 chr9 29904656 29904763 -87957864 - MIR SINE MIR -9 253 162 2209 179 94 39 chr9 29904763 29905283 -87957344 - MER44D DNA MER2_type -1 604 1 588 282 5 61 chr9 29905283 29905388 -87957239 - MIR SINE MIR -100 162 53 870 263 88 21 chr9 29905438 29905852 -87956775 - L1ME2 LINE L1 -10 6154 5714 23 0 0 0 chr9 29906101 29906124 -87956503 + AT_rich Low_complexity Low_complexity 1 23 0 204 341 174 12 chr9 29907131 29907298 -87955329 + MIR SINE MIR 8 201 -61 2142 95 7 3 chr9 29907303 29907588 -87955039 + AluSq SINE Alu 1 286 -27 336 64 0 0 chr9 29907588 29907635 -87954992 + (CATA)n Simple_repeat Simple_repeat 2 48 0 401 299 62 94 chr9 29907802 29908240 -87954387 + MLT1H LTR MaLR 104 527 -22 504 252 43 29 chr9 29908281 29908420 -87954207 - MIR SINE MIR -110 152 12 180 125 0 0 chr9 29908613 29908645 -87953982 + (CA)n Simple_repeat Simple_repeat 2 33 0 205 195 24 0 chr9 29909073 29909114 -87953513 + CT-rich Low_complexity Low_complexity 1 42 0 439 286 51 67 chr9 29909381 29909755 -87952872 + L1M4 LINE L1 3673 4040 -2106 576 258 72 10 chr9 29910463 29910657 -87951970 - L1M4 LINE L1 -1263 5843 5638 261 119 0 0 chr9 29910707 29910749 -87951878 + (TA)n Simple_repeat Simple_repeat 2 43 0 1080 251 42 40 chr9 29910790 29911240 -87951387 - L1MEc LINE L1 -3245 3861 3411 264 235 8 34 chr9 29911294 29911413 -87951214 - L1MEc LINE L1 -4129 3158 3043 884 188 108 0 chr9 29911483 29911706 -87950921 - L1MA8 LINE L1 -22 6269 6023 * 3302 253 116 58 chr9 29911705 29913228 -87949399 - L1M4 LINE L1 -5418 1612 2 330 326 109 29 chr9 29913243 29913519 -87949108 - L1MEc LINE L1 -4304 2983 2686 1820 263 30 87 chr9 29913626 29913988 -87948639 - L1M4c LINE L1 -4438 2849 2468 2725 52 9 0 chr9 29913988 29914331 -87948296 - L1PA7 LINE L1 -5 6149 5804 1820 263 30 87 chr9 29914331 29915395 -87947232 - L1M4c LINE L1 -4819 2468 1339 243 0 0 0 chr9 29915407 29915434 -87947193 + (TG)n Simple_repeat Simple_repeat 2 28 0 2119 114 0 3 chr9 29915435 29915725 -87946902 - AluSc SINE Alu -14 295 7 531 246 64 37 chr9 29916194 29916381 -87946246 - L1M4c LINE L1 -6613 395 204 407 333 41 7 chr9 29916488 29916635 -87945992 - MIR SINE MIR -106 156 5 22 0 0 0 chr9 29916960 29916982 -87945645 + AT_rich Low_complexity Low_complexity 1 22 0 414 321 10 72 chr9 29917345 29917538 -87945089 + MIR SINE MIR 57 237 -25 577 332 30 30 chr9 29917578 29917759 -87944868 + MIR SINE MIR 28 211 -51 3975 153 94 12 chr9 29917759 29918522 -87944105 + LTR1B LTR ERV1 1 826 0 577 332 30 30 chr9 29918522 29918575 -87944052 + MIR SINE MIR 210 262 0 25 75 0 0 chr9 29920394 29920447 -87942180 + AT_rich Low_complexity Low_complexity 1 53 0 213 308 46 0 chr9 29920846 29920911 -87941716 - MIR3 SINE MIR -22 186 119 405 261 76 57 chr9 29921453 29921610 -87941017 + MIR SINE MIR 73 232 -30 284 337 0 0 chr9 29921615 29921698 -87940929 + LTR40c LTR ERVL 4 86 -379 1619 162 6 79 chr9 29921784 29922112 -87940515 + AluJo SINE Alu 1 304 -8 427 230 29 88 chr9 29922213 29922452 -87940175 - L1M4 LINE L1 -1550 4596 4372 203 276 0 0 chr9 29922474 29922532 -87940095 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 507 274 26 34 chr9 29922554 29922806 -87939821 + LTR40b LTR ERVL 187 451 -14 301 342 9 0 chr9 29923617 29923731 -87938896 + MIR SINE MIR 40 154 -108 300 261 183 59 chr9 29924545 29924698 -87937929 + MIR SINE MIR 79 250 -12 25 0 0 0 chr9 29924777 29924802 -87937825 + AT_rich Low_complexity Low_complexity 1 25 0 444 19 0 0 chr9 29924808 29924861 -87937766 + (CA)n Simple_repeat Simple_repeat 2 54 0 281 332 70 56 chr9 29924963 29925177 -87937450 - MIR SINE MIR -26 236 20 209 248 121 78 chr9 29925212 29925353 -87937274 - MER5A DNA MER1_type 0 189 43 * 230 323 85 62 chr9 29925256 29925386 -87937241 + MER5A DNA MER1_type 54 186 -3 2171 115 0 3 chr9 29925446 29925741 -87936886 - AluY SINE Alu -17 294 1 22 35 0 0 chr9 29925808 29925837 -87936790 + AT_rich Low_complexity Low_complexity 1 29 0 463 260 61 18 chr9 29926093 29926258 -87936369 + MIR SINE MIR 16 191 -64 2467 140 10 22 chr9 29926952 29927359 -87935268 + THE1C-int LTR MaLR 1179 1580 0 1593 168 26 60 chr9 29927359 29927711 -87934916 + THE1C LTR MaLR 1 340 -35 201 268 134 31 chr9 29928238 29928335 -87934292 + MIR SINE MIR 36 142 -120 2453 78 0 0 chr9 29930213 29930521 -87932106 + AluY SINE Alu 1 308 -3 23 0 0 0 chr9 29930860 29930883 -87931744 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 29931013 29931043 -87931584 + AT_rich Low_complexity Low_complexity 1 30 0 2213 138 8 8 chr9 29931320 29931689 -87930938 - L1PB1 LINE L1 -1 6150 5782 294 206 0 0 chr9 29931689 29931752 -87930875 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 291 105 0 0 chr9 29931752 29931790 -87930837 + (CA)n Simple_repeat Simple_repeat 2 39 0 26 30 0 0 chr9 29931829 29931862 -87930765 + GC_rich Low_complexity Low_complexity 1 33 0 1052 88 0 11 chr9 29931904 29932085 -87930542 + (C)n Simple_repeat Simple_repeat 1 179 0 206 216 14 0 chr9 29932223 29932297 -87930330 + C-rich Low_complexity Low_complexity 2 76 0 186 43 0 0 chr9 29932333 29932356 -87930271 + (CA)n Simple_repeat Simple_repeat 1 23 0 1209 81 0 0 chr9 29932365 29932526 -87930101 - L1PB1 LINE L1 -370 5781 5621 222 37 0 0 chr9 29932867 29932894 -87929733 + (CA)n Simple_repeat Simple_repeat 1 27 0 1951 125 15 15 chr9 29933141 29933470 -87929157 + MER67C LTR ERV1 382 710 0 245 180 0 33 chr9 29933697 29933720 -87928907 + GA-rich Low_complexity Low_complexity 3 25 -36 2067 253 28 8 chr9 29933720 29934250 -87928377 + MER87 LTR ERV1 1 541 0 245 180 0 33 chr9 29934250 29934287 -87928340 + GA-rich Low_complexity Low_complexity 25 61 0 9934 220 44 11 chr9 29934537 29936764 -87925863 + L1MA9 LINE L1 2587 4740 -1572 2115 171 47 33 chr9 29936764 29937215 -87925412 + MSTB2 LTR MaLR 1 457 0 9934 220 44 11 chr9 29937215 29937281 -87925346 + L1MA9 LINE L1 4740 4802 -1510 180 0 0 0 chr9 29937281 29937301 -87925326 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 9934 220 44 11 chr9 29937301 29938143 -87924484 + L1MA9 LINE L1 4802 5831 -481 615 117 0 0 chr9 29938148 29938242 -87924385 + (GA)n Simple_repeat Simple_repeat 1 94 0 1696 192 32 49 chr9 29938242 29938748 -87923879 + L1MA9 LINE L1 5814 6275 -37 2562 53 0 3 chr9 29938888 29939192 -87923435 + AluY SINE Alu 1 303 -8 1618 241 29 77 chr9 29939196 29939997 -87922630 - L1MC5 LINE L1 -435 7526 6628 369 0 0 0 chr9 29939998 29940039 -87922588 + (CA)n Simple_repeat Simple_repeat 2 42 0 513 0 0 0 chr9 29940847 29940904 -87921723 + (TA)n Simple_repeat Simple_repeat 1 57 0 354 291 101 39 chr9 29940920 29941178 -87921449 - HAL1b LINE L1 -966 382 109 495 0 0 0 chr9 29942837 29942892 -87919735 + (TG)n Simple_repeat Simple_repeat 1 55 0 445 355 52 3 chr9 29942900 29943147 -87919480 + MIR SINE MIR 6 260 -2 362 297 43 58 chr9 29943321 29943459 -87919168 + L2 LINE L2 3137 3272 0 2408 81 0 0 chr9 29944468 29944766 -87917861 + AluY SINE Alu 1 298 -13 195 42 0 0 chr9 29944861 29944885 -87917742 + (ATG)n Simple_repeat Simple_repeat 2 25 0 378 0 0 0 chr9 29945426 29945468 -87917159 + (CA)n Simple_repeat Simple_repeat 2 43 0 220 246 0 18 chr9 29945829 29945886 -87916741 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 340 358 18 0 chr9 29947997 29948106 -87914521 - L2 LINE L2 -8 3264 3154 1609 150 194 6 chr9 29948257 29948617 -87914010 + MSTA LTR MaLR 1 428 0 182 345 58 46 chr9 29951587 29951674 -87910953 + L3 LINE CR1 1016 1103 -474 387 0 0 0 chr9 29952215 29952258 -87910369 + (TG)n Simple_repeat Simple_repeat 2 44 0 420 307 22 39 chr9 29952419 29952598 -87910029 - MIR3 SINE MIR -5 203 28 205 327 50 50 chr9 29952598 29952757 -87909870 + L3 LINE CR1 1411 1569 -8 21 0 0 0 chr9 29953490 29953511 -87909116 + AT_rich Low_complexity Low_complexity 1 21 0 330 266 0 13 chr9 29953736 29953815 -87908812 - L2 LINE L2 -1 3271 3194 1665 166 43 15 chr9 29954164 29954490 -87908137 - MER7A DNA MER2_type 0 346 14 984 246 87 16 chr9 29954588 29954909 -87907718 + MER2 DNA MER2_type 1 344 0 287 376 8 8 chr9 29954993 29955118 -87907509 - L2 LINE L2 -213 3059 2935 1510 217 33 28 chr9 29955123 29955483 -87907144 - MLT1A1 LTR MaLR 0 365 4 21 36 0 0 chr9 29955491 29955519 -87907108 + AT_rich Low_complexity Low_complexity 1 28 0 476 327 44 24 chr9 29955735 29955986 -87906641 + MIR SINE MIR 7 262 0 2317 78 14 0 chr9 29956056 29956349 -87906278 + AluSc SINE Alu 1 297 -12 473 290 181 19 chr9 29956739 29956998 -87905629 + L2 LINE L2 2988 3288 -25 345 82 0 0 chr9 29957053 29957102 -87905525 + (CA)n Simple_repeat Simple_repeat 1 49 0 188 313 43 96 chr9 29957736 29957851 -87904776 + L2 LINE L2 3148 3256 -16 2198 130 8 31 chr9 29959892 29960276 -87902351 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr9 29960407 29960428 -87902199 + AT_rich Low_complexity Low_complexity 1 21 0 2974 169 138 36 chr9 29961358 29961701 -87900926 + MER44D DNA MER2_type 1 308 -2279 2464 60 0 19 chr9 29961701 29962018 -87900609 - AluY SINE Alu 0 311 1 2974 169 138 36 chr9 29962018 29962312 -87900315 + MER44D DNA MER2_type 308 703 -2 27 0 0 0 chr9 29962469 29962496 -87900131 + AT_rich Low_complexity Low_complexity 1 27 0 230 161 0 18 chr9 29963412 29963468 -87899159 + (TA)n Simple_repeat Simple_repeat 1 55 0 428 278 192 0 chr9 29965120 29965271 -87897356 + MER5A DNA MER1_type 10 189 0 2218 58 0 4 chr9 29965410 29965715 -87896912 + AluSc SINE Alu 3 306 0 1967 127 0 13 chr9 29966202 29966518 -87896109 - AluSx SINE Alu 0 312 1 286 250 135 19 chr9 29966553 29966657 -87895970 + L2 LINE L2 3183 3298 -15 285 185 25 12 chr9 29966927 29967008 -87895619 + (TA)n Simple_repeat Simple_repeat 1 82 0 315 0 0 0 chr9 29967368 29967403 -87895224 + (CA)n Simple_repeat Simple_repeat 2 36 0 180 152 0 0 chr9 29968314 29968347 -87894280 + (TG)n Simple_repeat Simple_repeat 2 34 0 218 352 105 0 chr9 29968553 29968658 -87893969 - L2 LINE L2 -2 3311 3196 388 129 0 24 chr9 29968659 29968744 -87893883 + (TA)n Simple_repeat Simple_repeat 2 84 0 339 25 0 0 chr9 29968744 29968784 -87893843 + (GA)n Simple_repeat Simple_repeat 2 41 0 5329 308 110 12 chr9 29968909 29971049 -87891578 - L2 LINE L2 -834 2480 131 278 333 78 16 chr9 29971055 29971184 -87891443 + MIR SINE MIR 125 261 -1 24 67 0 0 chr9 29973250 29973295 -87889332 + AT_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr9 29973434 29973484 -87889143 + AT_rich Low_complexity Low_complexity 1 50 0 227 394 96 0 chr9 29973529 29973623 -87889004 + L2 LINE L2 3191 3293 -20 330 258 156 27 chr9 29974587 29974687 -87887940 - MER112 DNA MER1_type -50 210 124 240 59 0 0 chr9 29974687 29974721 -87887906 + (TG)n Simple_repeat Simple_repeat 2 35 0 330 258 156 27 chr9 29974721 29974806 -87887821 - MER112 DNA MER1_type -136 124 1 37 23 0 0 chr9 29974865 29974909 -87887718 + AT_rich Low_complexity Low_complexity 1 44 0 347 0 23 0 chr9 29975918 29975961 -87886666 + (CAAAAA)n Simple_repeat Simple_repeat 1 44 0 180 308 44 11 chr9 29976694 29976785 -87885842 + MIR SINE MIR 44 137 -71 2177 85 3 3 chr9 29978380 29978708 -87883919 - AluY SINE Alu 0 328 1 212 392 200 0 chr9 29979174 29979304 -87883323 + L2 LINE L2 3116 3271 -1 24 67 0 0 chr9 29980148 29980193 -87882434 + AT_rich Low_complexity Low_complexity 1 45 0 268 304 70 17 chr9 29980724 29980839 -87881788 + L2 LINE L2 2585 2705 -609 2325 83 0 7 chr9 29980848 29981149 -87881478 + AluSg SINE Alu 1 299 -11 219 389 38 8 chr9 29981211 29981342 -87881285 + L2 LINE L2 2851 2985 -287 313 296 75 31 chr9 29981825 29981984 -87880643 + MER117 DNA MER1_type 1 166 -31 1286 325 141 40 chr9 29982123 29983359 -87879268 + L2 LINE L2 1947 3312 -1 28 0 0 0 chr9 29983595 29983623 -87879004 + AT_rich Low_complexity Low_complexity 1 28 0 31 68 0 0 chr9 29983715 29983774 -87878853 + AT_rich Low_complexity Low_complexity 1 59 0 1533 160 90 16 chr9 29984589 29984901 -87877726 - MER44D DNA MER2_type -4 605 1 499 319 160 31 chr9 29984929 29985374 -87877253 - L2 LINE L2 -1 3312 2811 2130 120 0 0 chr9 29985541 29985840 -87876787 + AluSc SINE Alu 1 299 -10 275 329 66 15 chr9 29985844 29985981 -87876646 + L2 LINE L2 2562 2705 -609 1391 69 0 11 chr9 29985990 29986165 -87876462 + AluSg SINE Alu 1 173 -137 225 333 40 33 chr9 29986688 29986838 -87875789 - L2 LINE L2 -1640 1674 1524 1834 189 43 36 chr9 29987262 29987653 -87874974 - MSTD LTR MaLR 0 396 3 537 288 52 86 chr9 29988656 29989076 -87873551 - MLT1K LTR MaLR 0 588 183 2098 137 0 3 chr9 29989764 29990070 -87872557 - AluSq SINE Alu -8 305 1 3245 94 0 5 chr9 29993788 29994234 -87868393 + MLT2A1 LTR ERVL 1 444 0 365 304 151 13 chr9 29994371 29994554 -87868073 - MIR SINE MIR -49 213 7 1097 251 118 22 chr9 29994775 29995130 -87867497 + MLT1G1 LTR MaLR 15 403 -192 246 403 0 7 chr9 29995397 29995536 -87867091 + MLT1G1 LTR MaLR 451 588 -7 451 308 77 11 chr9 29995906 29996088 -87866539 + MER117 DNA MER1_type 4 197 0 205 316 127 13 chr9 29996201 29996359 -87866268 + MIR SINE MIR 17 192 -70 274 271 369 9 chr9 29998553 29998767 -87863860 - L3 LINE CR1 -8 1569 1279 681 240 28 69 chr9 29998770 29998987 -87863640 + MIR SINE MIR 49 256 -6 348 301 89 60 chr9 29999002 29999284 -87863343 + L3 LINE CR1 691 980 -597 23 33 0 0 chr9 29999481 29999511 -87863116 + AT_rich Low_complexity Low_complexity 1 30 0 462 171 191 7 chr9 29999610 29999762 -87862865 - Charlie4 DNA MER1_type -7 1954 1775 * 661 201 93 26 chr9 29999761 29999955 -87862672 - Charlie4 DNA MER1_type -1669 292 86 1956 213 82 49 chr9 30000270 30000904 -87861723 + LTR1B LTR ERV1 1 655 -171 2089 123 3 7 chr9 30000990 30001292 -87861335 + AluSq SINE Alu 1 301 -12 281 378 30 20 chr9 30001776 30001977 -87860650 - L2 LINE L2 -513 2801 2599 189 195 0 0 chr9 30002142 30002183 -87860444 + (CA)n Simple_repeat Simple_repeat 2 42 0 221 341 24 0 chr9 30002183 30002268 -87860359 + (CATG)n Simple_repeat Simple_repeat 4 90 0 228 122 0 0 chr9 30002269 30002310 -87860317 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr9 30003273 30003294 -87859333 + AT_rich Low_complexity Low_complexity 1 21 0 345 308 29 19 chr9 30006270 30006374 -87856253 + L2 LINE L2 3168 3272 0 2204 101 0 3 chr9 30007713 30008000 -87854627 - AluSp SINE Alu -27 286 1 38 51 0 0 chr9 30008005 30008064 -87854563 + AT_rich Low_complexity Low_complexity 1 59 0 2219 92 0 3 chr9 30008748 30009031 -87853596 + AluSp SINE Alu 1 282 -31 267 31 0 0 chr9 30009034 30009066 -87853561 + (TA)n Simple_repeat Simple_repeat 2 33 0 1597 210 78 24 chr9 30009455 30009917 -87852710 + Charlie1b DNA MER1_type 37 523 0 359 231 10 39 chr9 30009922 30010026 -87852601 + L2 LINE L2 2390 2490 -824 7387 184 98 59 chr9 30010059 30011747 -87850880 - MER52A LTR ERV1 -2 1753 1 204 388 50 0 chr9 30011761 30011921 -87850706 + L2 LINE L2 2507 2674 -640 361 332 74 21 chr9 30012215 30012414 -87850213 + L2 LINE L2 2809 3014 -299 201 231 0 19 chr9 30012749 30012801 -87849826 + MIR SINE MIR 110 160 -102 747 283 33 50 chr9 30012812 30013112 -87849515 - L2 LINE L2 0 3313 3019 443 174 23 0 chr9 30013638 30013724 -87848903 - MIR SINE MIR -73 189 102 343 171 40 0 chr9 30014598 30014674 -87847953 + MER116 DNA Mariner 2 80 0 209 318 209 18 chr9 30015240 30015350 -87847277 + MIR SINE MIR 34 164 -98 2175 127 0 16 chr9 30015465 30015781 -87846846 + AluSx SINE Alu 2 312 0 213 94 0 0 chr9 30017390 30017422 -87845205 + (CA)n Simple_repeat Simple_repeat 2 33 0 602 314 52 44 chr9 30018154 30018498 -87844129 - MLT1I LTR MaLR 0 409 63 21 0 0 0 chr9 30018997 30019018 -87843609 + AT_rich Low_complexity Low_complexity 1 21 0 313 271 47 0 chr9 30019133 30019218 -87843409 + L1MC4 LINE L1 6614 6702 -1340 378 131 0 36 chr9 30019219 30019303 -87843324 + (TA)n Simple_repeat Simple_repeat 2 82 0 271 239 0 22 chr9 30019309 30019401 -87843226 + L1MC4 LINE L1 6614 6703 -1339 657 117 4 59 chr9 30019421 30019703 -87842924 + (TA)n Simple_repeat Simple_repeat 1 266 0 312 283 0 22 chr9 30019707 30019799 -87842828 + L1MC4 LINE L1 6614 6703 -1339 459 173 0 64 chr9 30020232 30020342 -87842285 + MLT1A1 LTR MaLR 3 105 -260 284 342 61 61 chr9 30021120 30021415 -87841212 + L2 LINE L2 2977 3271 -1 272 342 25 66 chr9 30021875 30022118 -87840509 + MLT1I LTR MaLR 101 333 -76 1554 216 107 50 chr9 30022509 30022986 -87839641 - MLT1D LTR MaLR 0 505 2 21 36 0 0 chr9 30023061 30023089 -87839538 + AT_rich Low_complexity Low_complexity 1 28 0 193 222 56 56 chr9 30024569 30024641 -87837986 + L3 LINE CR1 1486 1557 -20 1893 159 37 11 chr9 30024913 30025265 -87837362 - THE1C LTR MaLR -1 374 14 242 319 11 11 chr9 30025295 30025389 -87837238 + MIR SINE MIR 113 206 -56 817 211 26 21 chr9 30025411 30025601 -87837026 + MER20 DNA MER1_type 29 219 0 219 69 0 0 chr9 30027035 30027064 -87835563 + (CA)n Simple_repeat Simple_repeat 2 30 0 528 356 170 34 chr9 30027654 30028676 -87833951 - L2 LINE L2 -16 3256 2107 607 312 78 9 chr9 30028713 30028931 -87833696 - MIR SINE MIR -18 244 12 916 180 44 81 chr9 30029021 30029293 -87833334 + MER33 DNA MER1_type 1 262 -62 213 294 200 0 chr9 30030393 30030478 -87832149 + MIR SINE MIR 115 216 -46 26 30 0 0 chr9 30031121 30031154 -87831473 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 30031287 30031308 -87831319 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 30031437 30031471 -87831156 + AT_rich Low_complexity Low_complexity 1 34 0 1511 234 19 22 chr9 30031580 30031947 -87830680 + MLT2D LTR ERVL 1 366 -48 293 47 23 0 chr9 30031949 30031992 -87830635 + (TAGA)n Simple_repeat Simple_repeat 4 47 0 210 169 13 26 chr9 30032008 30032085 -87830542 + (TA)n Simple_repeat Simple_repeat 1 76 0 370 99 87 5 chr9 30032329 30032754 -87829873 + (TA)n Simple_repeat Simple_repeat 1 459 0 321 26 0 0 chr9 30032962 30033000 -87829627 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 759 176 8 0 chr9 30033000 30033131 -87829496 + FRAM SINE Alu 1 129 -47 21 0 0 0 chr9 30034604 30034625 -87828002 + AT_rich Low_complexity Low_complexity 1 21 0 425 116 0 0 chr9 30035563 30035632 -87826995 + L1PA13 LINE L1 6088 6156 -7 30 0 0 0 chr9 30036150 30036180 -87826447 + AT_rich Low_complexity Low_complexity 1 30 0 349 341 103 66 chr9 30036203 30036523 -87826104 - L2 LINE L2 -12 3260 2929 2126 115 0 6 chr9 30036885 30037198 -87825429 + AluY SINE Alu 1 311 0 227 305 102 53 chr9 30039013 30039168 -87823459 - MIR SINE MIR -57 151 45 229 259 0 0 chr9 30039773 30039831 -87822796 + (TG)n Simple_repeat Simple_repeat 2 59 0 269 336 65 100 chr9 30040518 30040967 -87821660 - L2 LINE L2 -2 3270 2838 237 349 34 81 chr9 30041761 30041996 -87820631 + L2 LINE L2 2963 3186 -86 524 343 116 15 chr9 30042106 30042587 -87820040 + L1MC4a LINE L1 5296 5825 -1983 31 26 0 0 chr9 30042593 30042631 -87819996 + AT_rich Low_complexity Low_complexity 1 38 0 26 82 0 0 chr9 30042905 30042966 -87819661 + AT_rich Low_complexity Low_complexity 1 61 0 242 298 158 0 chr9 30043104 30043241 -87819386 + MIR SINE MIR 15 173 -89 1960 120 22 35 chr9 30044478 30044794 -87817833 + AluSx SINE Alu 1 312 0 25 0 0 0 chr9 30045255 30045280 -87817347 + AT_rich Low_complexity Low_complexity 1 25 0 413 278 26 147 chr9 30045784 30046057 -87816570 - MIR SINE MIR -3 259 20 309 272 64 32 chr9 30046544 30046669 -87815958 - L1MC4 LINE L1 0 8042 7914 918 215 129 68 chr9 30046722 30047163 -87815464 - L1MC4 LINE L1 -132 7910 7443 209 57 29 0 chr9 30047617 30047652 -87814975 + (TTA)n Simple_repeat Simple_repeat 3 38 0 8370 31 0 0 chr9 30047652 30049406 -87813221 - L1PA3 LINE L1 -18 6137 4384 9922 38 2 0 chr9 30049406 30050630 -87811997 + L1PA3 LINE L1 3172 4397 -1749 332 331 73 22 chr9 30051249 30051427 -87811200 + MIR3 SINE MIR 17 203 -5 2136 106 0 20 chr9 30051492 30051589 -87811038 - AluSx SINE Alu -11 301 204 3398 197 23 63 chr9 30051589 30052599 -87810028 + LTR5 LTR ERVK 1 969 0 2136 106 0 20 chr9 30052599 30052803 -87809824 - AluSx SINE Alu -108 204 6 1883 105 0 14 chr9 30053019 30053295 -87809332 - L1PA11 LINE L1 -4 6170 5899 306 266 0 38 chr9 30053694 30053773 -87808854 + MIR SINE MIR 5 80 -182 521 341 49 46 chr9 30054261 30054566 -87808061 + L2 LINE L2 2589 2894 -420 220 69 0 0 chr9 30054568 30054597 -87808030 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 702 120 0 0 chr9 30054597 30054697 -87807930 - AluSg/x SINE Alu -30 282 183 263 328 52 95 chr9 30054763 30054989 -87807638 + L2 LINE L2 2926 3160 -153 407 92 15 0 chr9 30054989 30055054 -87807573 + (TA)n Simple_repeat Simple_repeat 2 67 0 2267 112 0 0 chr9 30055058 30055362 -87807265 - AluSx SINE Alu -8 304 1 263 328 52 95 chr9 30055362 30055530 -87807097 + L2 LINE L2 3163 3308 -5 361 188 15 23 chr9 30056052 30056185 -87806442 + (TA)n Simple_repeat Simple_repeat 2 133 0 306 221 11 42 chr9 30056223 30056318 -87806309 - L1MC4 LINE L1 -1339 6703 6612 417 11 100 0 chr9 30056318 30056408 -87806219 + (TA)n Simple_repeat Simple_repeat 1 99 0 309 281 0 35 chr9 30056761 30056906 -87805721 + L1MC4 LINE L1 6614 6703 -1339 230 313 50 12 chr9 30060506 30060586 -87802041 - L2 LINE L2 0 3313 3231 30 0 0 0 chr9 30060822 30060852 -87801775 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr9 30061580 30061614 -87801013 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 370 194 14 0 chr9 30062657 30062729 -87799898 + MIR SINE MIR 101 173 -89 300 262 104 53 chr9 30064874 30065128 -87797499 - L1ME LINE L1 -542 5579 5312 4335 39 0 0 chr9 30065135 30065654 -87796973 - L1PA3 LINE L1 0 6155 5637 22 0 0 0 chr9 30066043 30066065 -87796562 + AT_rich Low_complexity Low_complexity 1 22 0 1351 141 48 0 chr9 30066105 30066375 -87796252 - L1MA8 LINE L1 -1 6290 6008 416 370 110 28 chr9 30066521 30066626 -87796001 - L2 LINE L2 -678 2636 2541 2110 176 13 33 chr9 30066626 30067080 -87795547 + MER65A LTR ERV1 1 445 0 416 370 110 28 chr9 30067080 30067576 -87795051 - L2 LINE L2 -773 2541 1986 652 277 114 0 chr9 30068950 30069170 -87793457 + MIR SINE MIR 15 259 -3 307 350 84 31 chr9 30069249 30069475 -87793152 + L3 LINE CR1 1329 1566 -11 1177 153 18 9 chr9 30070103 30070325 -87792302 + L1PA13 LINE L1 5939 6162 -1 5997 239 102 32 chr9 30070367 30073291 -87789336 + L1MA8 LINE L1 1 3147 -3959 603 233 8 0 chr9 30073293 30073413 -87789214 + FLAM_C SINE Alu 1 121 -12 12058 200 41 23 chr9 30073433 30074827 -87787800 + L1MA8 LINE L1 3124 4492 -2759 347 60 20 0 chr9 30074827 30074877 -87787750 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 1532 193 11 21 chr9 30074878 30075163 -87787464 - AluJo SINE Alu -30 282 1 12058 200 41 23 chr9 30075163 30077820 -87784807 + L1MA8 LINE L1 4491 7246 -5 291 54 0 0 chr9 30079525 30079562 -87783065 + (CA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr9 30081458 30081483 -87781144 + AT_rich Low_complexity Low_complexity 1 25 0 1971 141 152 11 chr9 30081834 30082209 -87780418 + MSTA LTR MaLR 1 428 0 225 293 123 28 chr9 30084291 30084397 -87778230 + MLT1I LTR MaLR 126 241 -168 1144 219 8 21 chr9 30085916 30086158 -87776469 - MER8 DNA MER2_type 0 239 1 2394 81 0 3 chr9 30086236 30086545 -87776082 + AluSc SINE Alu 2 309 0 853 206 22 0 chr9 30086691 30086871 -87775756 - MER5A DNA MER1_type -4 185 2 249 376 120 0 chr9 30087095 30087212 -87775415 - L2 LINE L2 -5 3267 3137 4194 146 79 34 chr9 30087336 30088202 -87774425 + MER4D LTR ERV1 1 664 0 21 82 0 0 chr9 30088582 30088631 -87773996 + AT_rich Low_complexity Low_complexity 1 49 0 1159 102 0 18 chr9 30088826 30088993 -87773634 - AluSq SINE Alu -5 308 145 425 292 88 21 chr9 30089125 30089317 -87773310 + L3 LINE CR1 657 861 -716 242 308 0 22 chr9 30089330 30089421 -87773206 + MLT1L LTR MaLR 1 89 -526 2146 112 29 11 chr9 30089450 30089799 -87772828 - THE1A LTR MaLR 0 355 1 272 311 37 22 chr9 30089865 30090000 -87772627 + MLT1J LTR MaLR 235 371 -140 238 240 0 40 chr9 30090167 30090267 -87772360 + A-rich Low_complexity Low_complexity 2 97 0 306 243 176 34 chr9 30091383 30091531 -87771096 - L1MC/D LINE L1 -2028 5780 5612 30 0 0 0 chr9 30091678 30091708 -87770919 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr9 30092110 30092133 -87770494 + (CA)n Simple_repeat Simple_repeat 2 24 0 397 265 93 40 chr9 30092177 30092328 -87770299 + MIR SINE MIR 32 190 -72 870 311 65 29 chr9 30093087 30093576 -87769051 + LTR33 LTR ERVL 13 519 -2 180 111 0 0 chr9 30094007 30094034 -87768593 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1151 264 53 35 chr9 30094156 30094554 -87768073 + MLT1D LTR MaLR 1 405 -100 234 350 43 17 chr9 30095391 30095508 -87767119 + L2 LINE L2 2677 2796 -518 1831 165 7 7 chr9 30095602 30095905 -87766722 - AluSx SINE Alu -9 303 1 210 71 0 0 chr9 30095927 30095955 -87766672 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1130 166 18 5 chr9 30096164 30096381 -87766246 - L1 LINE L1 -3677 2469 2250 964 139 39 0 chr9 30096381 30096553 -87766074 + L1MA7 LINE L1 6105 6291 0 1820 253 55 33 chr9 30096577 30097126 -87765501 + MER77 LTR ERV1 41 601 -4 2286 110 0 3 chr9 30097417 30097726 -87764901 + AluSg SINE Alu 1 308 -2 356 278 66 69 chr9 30098236 30098553 -87764074 + L2 LINE L2 2964 3279 -34 333 329 73 0 chr9 30098918 30099055 -87763572 + MIR SINE MIR 110 256 -6 955 291 16 4 chr9 30099086 30099337 -87763290 - MIR SINE MIR 0 262 9 224 358 204 11 chr9 30099355 30099531 -87763096 - MIR SINE MIR 0 262 53 616 131 10 0 chr9 30099808 30099907 -87762720 + Tigger2 DNA MER2_type 2 101 -2617 217 236 55 0 chr9 30101751 30101806 -87760821 + L2 LINE L2 3256 3313 0 2031 109 4 0 chr9 30103212 30103487 -87759140 + AluSg SINE Alu 1 276 -34 399 41 0 0 chr9 30103492 30103541 -87759086 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 231 266 48 81 chr9 30103839 30103963 -87758664 - MIR SINE MIR -4 258 139 190 378 65 44 chr9 30104026 30104281 -87758346 + L2 LINE L2 2395 2663 -651 1908 153 0 0 chr9 30104281 30104591 -87758036 - AluSx SINE Alu 0 310 1 190 378 65 44 chr9 30104591 30104718 -87757909 + L2 LINE L2 2663 2786 -528 2120 158 101 5 chr9 30104975 30105381 -87757246 + MER65A LTR ERV1 1 445 0 248 271 34 68 chr9 30107817 30107935 -87754692 - MIR SINE MIR -65 197 84 219 336 62 31 chr9 30107989 30108117 -87754510 + MIR SINE MIR 105 236 -26 1455 232 55 8 chr9 30108165 30108531 -87754096 - MLT1B LTR MaLR 0 390 8 1717 247 36 38 chr9 30108532 30108982 -87753645 - MLT1B-int LTR MaLR -8 1727 1279 1653 136 29 0 chr9 30109174 30109447 -87753180 - L1PA13 LINE L1 -1 6162 5882 952 223 38 17 chr9 30109525 30109821 -87752806 - MLT1B-int LTR MaLR -487 884 491 1505 163 30 95 chr9 30109841 30110209 -87752418 + MER7A DNA MER2_type 2 343 -3 406 384 56 30 chr9 30110899 30111167 -87751460 + L2 LINE L2 2998 3272 0 24 0 0 0 chr9 30111400 30111424 -87751203 + AT_rich Low_complexity Low_complexity 1 24 0 686 286 84 47 chr9 30111533 30111960 -87750667 + MLT1J1 LTR MaLR 4 446 0 276 170 0 0 chr9 30112415 30112468 -87750159 + GA-rich Low_complexity Low_complexity 4 56 0 384 212 50 10 chr9 30113296 30113395 -87749232 - Charlie2b DNA MER1_type -2114 668 566 501 319 26 31 chr9 30113415 30113644 -87748983 - Charlie2b DNA MER1_type -2479 303 76 306 269 77 69 chr9 30113835 30113965 -87748662 + MIR3 SINE MIR 5 135 -73 211 363 118 15 chr9 30114136 30114271 -87748356 + L2 LINE L2 3122 3270 -2 544 330 53 23 chr9 30115384 30115726 -87746901 - MLT1J LTR MaLR -46 465 114 201 74 0 0 chr9 30115739 30115766 -87746861 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 2221 103 0 0 chr9 30115788 30116090 -87746537 - AluSq SINE Alu -11 302 1 223 369 70 19 chr9 30116509 30116666 -87745961 + MIR SINE MIR 44 208 -54 332 351 23 8 chr9 30117005 30117136 -87745491 + MER5A DNA MER1_type 57 189 0 214 258 83 61 chr9 30117470 30117602 -87745025 - MIR SINE MIR -36 226 92 282 196 0 0 chr9 30118485 30118582 -87744045 + (TA)n Simple_repeat Simple_repeat 1 97 0 401 323 133 5 chr9 30118704 30118899 -87743728 + MIR SINE MIR 2 221 -41 191 209 33 11 chr9 30119068 30119159 -87743468 + (TA)n Simple_repeat Simple_repeat 1 93 0 13359 88 4 64 chr9 30120486 30122661 -87739966 + L1P LINE L1 2983 5026 -1120 722 272 150 23 chr9 30122661 30123264 -87739363 + LTR50 LTR ERVL 33 759 -36 1130 71 19 0 chr9 30123264 30123418 -87739209 + L1PA8A LINE L1 5325 5481 -650 181 368 13 26 chr9 30123654 30123730 -87738897 + MIR SINE MIR 12 86 -176 1096 279 92 39 chr9 30123785 30124277 -87738350 + MLT1H LTR MaLR 19 536 -13 194 268 31 62 chr9 30124302 30124399 -87738228 + MIR SINE MIR 159 252 -10 4673 225 50 39 chr9 30124687 30126118 -87736509 - Charlie1a DNA MER1_type -3 1452 7 282 289 18 24 chr9 30126494 30126660 -87735967 + GA-rich Low_complexity Low_complexity 2 166 0 615 173 91 0 chr9 30127207 30127317 -87735310 - FLAM_C SINE Alu -23 120 1 758 221 4 4 chr9 30127941 30128189 -87734438 + CT-rich Low_complexity Low_complexity 1 248 0 531 320 73 14 chr9 30129241 30129460 -87733167 - MIR SINE MIR -13 249 18 262 206 27 0 chr9 30130079 30130152 -87732475 + GA-rich Low_complexity Low_complexity 2 76 0 213 39 0 0 chr9 30130972 30130998 -87731629 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 306 0 0 0 chr9 30130997 30131031 -87731596 + (CA)n Simple_repeat Simple_repeat 1 34 0 1244 237 3 14 chr9 30131620 30131907 -87730720 + AluJo SINE Alu 19 302 -10 195 162 0 0 chr9 30132231 30132268 -87730359 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 26 50 0 0 chr9 30132275 30132315 -87730312 + AT_rich Low_complexity Low_complexity 1 40 0 192 40 0 0 chr9 30133422 30133447 -87729180 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 639 294 0 33 chr9 30133567 30133747 -87728880 - MIR SINE MIR -21 241 68 275 187 147 13 chr9 30134638 30134713 -87727914 + MER3 DNA MER1_type 124 208 -1 3411 153 30 10 chr9 30134749 30134928 -87727699 + L1MA4A LINE L1 5611 5785 -518 315 0 0 0 chr9 30134928 30134963 -87727664 + (CA)n Simple_repeat Simple_repeat 2 36 0 3411 153 30 10 chr9 30134963 30135391 -87727236 + L1MA4A LINE L1 5785 6230 -73 273 196 0 0 chr9 30135470 30135526 -87727101 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 192 274 34 164 chr9 30135652 30135798 -87726829 - L2 LINE L2 -188 3084 2958 393 327 142 9 chr9 30135883 30136109 -87726518 - L2 LINE L2 -498 2816 2561 30 89 0 0 chr9 30136355 30136434 -87726193 + AT_rich Low_complexity Low_complexity 1 79 0 279 315 48 55 chr9 30137888 30138034 -87724593 - MIR SINE MIR -60 202 58 256 308 0 26 chr9 30139928 30140006 -87722621 + L2 LINE L2 3234 3309 -4 1651 294 105 75 chr9 30140457 30141669 -87720958 - L2 LINE L2 -90 3223 1985 17503 164 50 21 chr9 30141707 30144005 -87718622 + L1M1 LINE L1 22 2252 -5313 2520 113 3 6 chr9 30144005 30144369 -87718258 - THE1B LTR MaLR -1 363 1 17503 164 50 21 chr9 30144369 30144757 -87717870 + L1M1 LINE L1 2252 2627 -4938 2226 122 37 8 chr9 30144757 30145111 -87717516 + THE1B LTR MaLR 1 364 0 17503 164 50 21 chr9 30145111 30145508 -87717119 + L1M1 LINE L1 2627 3011 -4554 2067 104 7 3 chr9 30145508 30145805 -87716822 + AluSg SINE Alu 1 298 -12 17503 164 50 21 chr9 30145805 30146011 -87716616 + L1M1 LINE L1 3011 3409 -4156 428 284 139 36 chr9 30146098 30146292 -87716335 - MIR SINE MIR 0 262 49 190 363 20 10 chr9 30146305 30146407 -87716220 + MIR SINE MIR 38 140 -68 28 29 0 0 chr9 30148853 30148888 -87713739 + AT_rich Low_complexity Low_complexity 1 35 0 339 360 94 24 chr9 30149303 30149600 -87713027 + L3b LINE CR1 1105 1422 -161 412 257 118 43 chr9 30149800 30149987 -87712640 + MIR SINE MIR 53 253 -9 186 71 0 0 chr9 30150887 30150915 -87711712 + (CA)n Simple_repeat Simple_repeat 2 29 0 1346 284 66 49 chr9 30151338 30152353 -87710274 + L2 LINE L2 2281 3308 -5 187 330 75 21 chr9 30153133 30153227 -87709400 - L2 LINE L2 -18 3295 3197 321 347 32 63 chr9 30153444 30153634 -87708993 + MER5A DNA MER1_type 3 186 -3 529 308 77 5 chr9 30154485 30154680 -87707947 + MER58C DNA MER1_type 4 212 -3 5385 178 17 20 chr9 30156112 30157995 -87704632 - L1MA7 LINE L1 -1 7709 5832 1341 143 98 0 chr9 30157997 30158241 -87704386 - Tigger5 DNA MER2_type 0 2323 2056 260 245 0 0 chr9 30158247 30158300 -87704327 - Tigger5 DNA MER2_type -2270 53 1 903 124 20 80 chr9 30158301 30158502 -87704125 - L1MA7 LINE L1 -1733 5832 5644 5478 225 22 8 chr9 30158527 30159973 -87702654 - L1MA7 LINE L1 -2596 4969 3505 1262 304 5 29 chr9 30159980 30160391 -87702236 - L1MA7 LINE L1 -5880 1616 1216 22 0 0 0 chr9 30160394 30160416 -87702211 + AT_rich Low_complexity Low_complexity 1 22 0 268 326 61 10 chr9 30160869 30160967 -87701660 + MIR SINE MIR 19 121 -87 22 0 0 0 chr9 30161045 30161067 -87701560 + AT_rich Low_complexity Low_complexity 1 22 0 339 279 254 15 chr9 30161081 30161282 -87701345 + MLT1J1 LTR MaLR 21 269 -177 43020 41 7 3 chr9 30161291 30167410 -87695217 + L1PA3 LINE L1 8 6154 -1 304 313 10 0 chr9 30167557 30167653 -87694974 + MLT1J2 LTR MaLR 354 450 0 750 165 0 0 chr9 30168525 30168646 -87693981 + FLAM_C SINE Alu 1 121 -12 200 306 32 16 chr9 30168706 30168768 -87693859 - L2 LINE L2 -3 3269 3207 2163 96 0 0 chr9 30168918 30169223 -87693404 + AluY SINE Alu 1 305 0 532 338 40 15 chr9 30169277 30169478 -87693149 - MIR SINE MIR -34 228 23 320 309 0 0 chr9 30169540 30169621 -87693006 + MER117 DNA MER1_type 100 180 -17 23 0 0 0 chr9 30171862 30171885 -87690742 + AT_rich Low_complexity Low_complexity 1 23 0 302 223 7 159 chr9 30172264 30172565 -87690062 - MER112 DNA MER1_type 0 256 2 264 122 0 0 chr9 30173002 30173043 -87689584 + MADE1 DNA Mariner 1 41 -39 1824 210 66 16 chr9 30174214 30174656 -87687971 + MLT1C LTR MaLR 3 466 -1 180 342 26 0 chr9 30175982 30176058 -87686569 - MIR SINE MIR -138 124 47 742 314 50 0 chr9 30176171 30176410 -87686217 + MIR SINE MIR 11 261 -1 212 143 0 0 chr9 30176679 30176714 -87685913 + (CA)n Simple_repeat Simple_repeat 2 36 0 914 190 103 115 chr9 30176764 30176977 -87685650 + MER2 DNA MER2_type 2 211 -134 1349 207 4 0 chr9 30176977 30177214 -87685413 + MER8 DNA MER2_type 2 239 0 914 190 103 115 chr9 30177214 30177348 -87685279 + MER2 DNA MER2_type 211 345 0 200 265 0 0 chr9 30178195 30178244 -87684383 + MIR3 SINE MIR 129 177 -31 500 318 41 0 chr9 30179125 30179295 -87683332 - L2 LINE L2 -944 2370 2194 7006 54 0 1 chr9 30179304 30180171 -87682456 - L1PA5 LINE L1 -1 6153 5288 11897 51 3 2 chr9 30180171 30181694 -87680933 + L1PA5 LINE L1 3753 5277 -869 478 331 25 0 chr9 30181694 30181851 -87680776 - L2 LINE L2 -1109 2205 2045 899 118 15 0 chr9 30182151 30182287 -87680340 + AluSg/x SINE Alu 171 308 -1 425 278 43 9 chr9 30182319 30182434 -87680193 + MIR SINE MIR 51 169 -93 21 0 0 0 chr9 30182555 30182576 -87680051 + AT_rich Low_complexity Low_complexity 1 21 0 407 329 110 9 chr9 30183354 30183452 -87679175 - MIR SINE MIR 0 262 175 2001 140 0 0 chr9 30183452 30183745 -87678882 + AluSx SINE Alu 1 293 -19 407 329 110 9 chr9 30183745 30183874 -87678753 - MIR SINE MIR -87 175 12 954 205 15 0 chr9 30186486 30186686 -87675941 + L1PB4 LINE L1 5953 6155 -1 1095 249 14 0 chr9 30186761 30186982 -87675645 - MER58A DNA MER1_type 0 224 1 619 311 65 20 chr9 30188881 30189232 -87673395 + L1PA12 LINE L1 1 367 -7214 259 77 0 96 chr9 30189333 30189385 -87673242 + L1PA16 LINE L1 5725 5771 -395 338 173 10 0 chr9 30189385 30189489 -87673138 + (TA)n Simple_repeat Simple_repeat 2 106 0 1656 168 6 52 chr9 30189489 30189853 -87672774 + L1PA16 LINE L1 5819 6165 -1 899 257 29 33 chr9 30189856 30190101 -87672526 - MIR SINE MIR -15 247 4 22 0 0 0 chr9 30190480 30190502 -87672125 + AT_rich Low_complexity Low_complexity 1 22 0 233 352 44 22 chr9 30190993 30191084 -87671543 + L2 LINE L2 3167 3259 -13 200 213 0 0 chr9 30192284 30192331 -87670296 + (TTAAA)n Simple_repeat Simple_repeat 3 49 0 2054 106 3 3 chr9 30192753 30193037 -87669590 + AluSg SINE Alu 1 284 -26 629 58 0 11 chr9 30193037 30193124 -87669503 + (GGAA)n Simple_repeat Simple_repeat 3 88 0 21 0 0 0 chr9 30193586 30193607 -87669020 + AT_rich Low_complexity Low_complexity 1 21 0 229 353 12 24 chr9 30194225 30194310 -87668317 + L2 LINE L2 3229 3312 -1 24 0 0 0 chr9 30194816 30194840 -87667787 + AT_rich Low_complexity Low_complexity 1 24 0 197 256 221 0 chr9 30195717 30195803 -87666824 + L2 LINE L2 3168 3272 0 2042 182 83 9 chr9 30196918 30197385 -87665242 - L1MA8 LINE L1 -2 6289 5788 1482 182 25 7 chr9 30197402 30197682 -87664945 - AluJo SINE Alu -4 308 24 21 36 0 0 chr9 30198307 30198335 -87664292 + AT_rich Low_complexity Low_complexity 1 28 0 1824 170 0 0 chr9 30198725 30199014 -87663613 - AluSx SINE Alu -23 289 1 282 369 74 23 chr9 30199129 30199305 -87663322 + MIR SINE MIR 49 233 -29 315 65 0 0 chr9 30199806 30199852 -87662775 + (GA)n Simple_repeat Simple_repeat 1 46 0 1012 251 49 0 chr9 30199888 30200111 -87662516 + MLT1H LTR MaLR 58 291 -258 345 367 130 0 chr9 30200561 30200730 -87661897 + MIR SINE MIR 1 191 -71 842 247 140 2 chr9 30201692 30202207 -87660420 - L1MD3 LINE L1 -11 7984 7145 1275 263 88 55 chr9 30202219 30202622 -87660005 + HsTC2a DNA Tc2 3 391 -1509 243 0 0 0 chr9 30202622 30202649 -87659978 + (TGG)n Simple_repeat Simple_repeat 3 29 0 261 0 0 0 chr9 30202649 30202678 -87659949 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1966 127 0 0 chr9 30202683 30202959 -87659668 - AluSx SINE Alu -36 276 1 1275 263 88 55 chr9 30202959 30203205 -87659422 + HsTC2a DNA Tc2 394 681 -63 381 232 113 13 chr9 30203802 30203953 -87658674 - MER112 DNA MER1_type -88 172 7 864 222 26 10 chr9 30204082 30204276 -87658351 - MER3 DNA MER1_type -11 198 2 189 0 0 0 chr9 30204755 30204776 -87657851 + (TA)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr9 30205011 30205035 -87657592 + AT_rich Low_complexity Low_complexity 1 24 0 1770 150 0 7 chr9 30205199 30205473 -87657154 + AluSx SINE Alu 25 296 -16 212 245 0 0 chr9 30205496 30205545 -87657082 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 212 235 78 0 chr9 30205765 30205816 -87656811 + MIR SINE MIR 47 101 -107 24 0 0 0 chr9 30205938 30205962 -87656665 + AT_rich Low_complexity Low_complexity 1 24 0 394 250 40 0 chr9 30206542 30206642 -87655985 - MIR3 SINE MIR -1 207 104 349 362 40 0 chr9 30209176 30209350 -87653277 + MIR SINE MIR 79 259 -3 993 236 129 10 chr9 30209417 30209819 -87652808 - L1ME LINE L1 -346 5816 5367 2262 220 49 49 chr9 30212622 30213664 -87648963 + L1MD1 LINE L1 4490 5575 -784 297 119 0 0 chr9 30213664 30213706 -87648921 + 5S rRNA rRNA 1 42 -79 2262 220 49 49 chr9 30213706 30213976 -87648651 + L1MD1 LINE L1 5575 5844 -515 663 163 0 8 chr9 30214077 30214200 -87648427 - L1MA8 LINE L1 -6 6285 6164 939 204 29 37 chr9 30214205 30214450 -87648177 + L1MD1 LINE L1 5831 6073 -169 282 185 74 0 chr9 30214455 30214536 -87648091 + L1MD2 LINE L1 6273 6359 0 255 291 46 86 chr9 30214692 30214843 -87647784 + MIR3 SINE MIR 18 162 -46 539 324 28 16 chr9 30215431 30215681 -87646946 + MIR SINE MIR 8 260 -2 768 278 49 4 chr9 30215915 30216160 -87646467 + L1MC4a LINE L1 5521 5776 -2032 1590 147 18 70 chr9 30216166 30216493 -87646134 - Tigger7 DNA MER2_type -1 2486 2177 1374 221 4 29 chr9 30216498 30216778 -87645849 - Tigger7 DNA MER2_type -2214 273 1 577 261 0 28 chr9 30216778 30216954 -87645673 + L1MC4a LINE L1 5780 5950 -1858 488 139 9 83 chr9 30216947 30217055 -87645572 + L1MA1 LINE L1 3877 3976 -2170 * 3308 212 18 0 chr9 30217061 30217720 -87644907 - L1P4 LINE L1 -1473 4673 4003 2421 188 18 0 chr9 30217729 30218235 -87644392 + L1P4 LINE L1 4680 5194 -952 1555 119 0 0 chr9 30218235 30218445 -87644182 + AluSx SINE Alu 1 210 -102 246 89 36 36 chr9 30218445 30218501 -87644126 + AluSx SINE Alu 247 302 0 1977 96 58 16 chr9 30218519 30218911 -87643716 + L1P4 LINE L1 5176 5576 -585 6847 142 21 27 chr9 30218912 30219257 -87643370 + L1MA1 LINE L1 3988 4334 -1968 1839 161 0 31 chr9 30219257 30219579 -87643048 + AluSx SINE Alu 1 312 0 6847 142 21 27 chr9 30219579 30221472 -87641155 + L1MA1 LINE L1 4334 6211 -91 2051 110 14 0 chr9 30221472 30221762 -87640865 - AluSx SINE Alu -18 294 1 6847 142 21 27 chr9 30221762 30221854 -87640773 + L1MA1 LINE L1 6211 6302 0 414 237 0 46 chr9 30221861 30221992 -87640635 + L1MC4a LINE L1 5925 6049 -1759 2352 156 100 8 chr9 30222444 30222913 -87639714 - L1MC1 LINE L1 -18 6315 5804 644 310 39 0 chr9 30223199 30223402 -87639225 + MIR SINE MIR 28 238 -24 398 184 13 0 chr9 30223444 30223520 -87639107 + MER116 DNA Mariner 4 80 0 489 86 0 0 chr9 30224781 30224858 -87637769 - L1PA4 LINE L1 -164 5992 5916 1340 25 0 0 chr9 30224858 30225010 -87637617 + L1PA4 LINE L1 5994 6152 -3 28 29 0 0 chr9 30225394 30225429 -87637198 + AT_rich Low_complexity Low_complexity 1 35 0 2151 108 0 0 chr9 30226378 30226673 -87635954 + AluSx SINE Alu 4 298 -14 1167 177 5 5 chr9 30226779 30226994 -87635633 - L1MB1 LINE L1 -302 5866 5652 5680 144 25 39 chr9 30227007 30228702 -87633925 - L1PB1 LINE L1 -1 6150 4482 1690 305 69 44 chr9 30228843 30230274 -87632353 + L1ME1 LINE L1 117 1583 -4813 1780 255 97 24 chr9 30230413 30230766 -87631861 + L1ME1 LINE L1 4382 4708 -1507 512 111 12 0 chr9 30230766 30230882 -87631745 + L1MA2 LINE L1 6220 6336 0 1780 255 97 24 chr9 30230882 30231366 -87631261 + L1ME1 LINE L1 4708 5281 -934 890 264 119 56 chr9 30231369 30232577 -87630050 + L1ME LINE L1 19 1301 -4779 410 195 47 22 chr9 30232563 30232684 -87629943 + L1ME1 LINE L1 5835 5965 -282 * 4307 187 32 17 chr9 30232692 30234219 -87628408 + L1MB3 LINE L1 4548 6094 -89 1779 153 20 7 chr9 30234845 30235139 -87627488 - AluSq SINE Alu -15 298 1 193 330 71 36 chr9 30235313 30235425 -87627202 + MIR SINE MIR 146 261 -1 2005 173 16 3 chr9 30236650 30237037 -87625590 - L1P LINE L1 -931 5215 4824 28 29 0 0 chr9 30239016 30239051 -87623576 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr9 30239633 30239675 -87622952 + AT_rich Low_complexity Low_complexity 1 42 0 237 363 137 6 chr9 30239917 30240085 -87622542 + L3 LINE CR1 411 600 -977 699 339 140 36 chr9 30240097 30240741 -87621886 + L3 LINE CR1 707 1417 -160 207 344 44 11 chr9 30241185 30241275 -87621352 + L3 LINE CR1 1484 1576 -1 210 143 0 0 chr9 30241503 30241538 -87621089 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 312 223 115 46 chr9 30241547 30241677 -87620950 - MIR SINE MIR -59 203 65 22 56 0 0 chr9 30242306 30242342 -87620285 + AT_rich Low_complexity Low_complexity 1 36 0 314 240 10 19 chr9 30242472 30242576 -87620051 + (TA)n Simple_repeat Simple_repeat 1 103 0 441 0 0 0 chr9 30242593 30242642 -87619985 + (TATTG)n Simple_repeat Simple_repeat 2 50 0 777 237 0 7 chr9 30242642 30242794 -87619833 - FRAM SINE Alu -25 151 1 399 41 0 0 chr9 30242921 30242970 -87619657 + (TA)n Simple_repeat Simple_repeat 1 49 0 471 293 79 56 chr9 30243457 30243672 -87618955 + MIR SINE MIR 13 232 -30 467 245 5 92 chr9 30243765 30243949 -87618678 + L1MB7 LINE L1 6007 6174 -10 659 185 15 7 chr9 30244194 30244329 -87618298 + MER3 DNA MER1_type 47 182 -27 264 213 0 0 chr9 30244362 30244423 -87618204 + CT-rich Low_complexity Low_complexity 1 61 0 1023 252 75 6 chr9 30244844 30245162 -87617465 + MER58B DNA MER1_type 1 340 -1 2129 71 61 30 chr9 30246117 30246414 -87616213 - AluY SINE Alu -5 306 1 1027 230 77 38 chr9 30247325 30247612 -87615015 - AluJo SINE Alu 0 302 5 243 119 45 0 chr9 30248017 30248084 -87614543 + (TA)n Simple_repeat Simple_repeat 1 70 0 190 308 39 39 chr9 30248093 30248171 -87614456 - MIR SINE MIR -147 115 38 372 244 47 0 chr9 30248185 30248294 -87614333 + MIR SINE MIR 64 178 -30 188 301 124 26 chr9 30250252 30250365 -87612262 - MER5A DNA MER1_type -1 188 65 * 314 180 11 56 chr9 30250364 30250453 -87612174 - MIR SINE MIR -49 213 129 311 253 112 47 chr9 30251307 30251477 -87611150 - MIR SINE MIR -1 261 81 6954 50 8 8 chr9 30251492 30252414 -87610213 - L1PA5 LINE L1 -2604 3542 2618 14666 44 2 1 chr9 30252414 30255032 -87607595 + L1PA5 LINE L1 3539 6154 0 6954 50 8 8 chr9 30255032 30255049 -87607578 - L1P LINE L1 -3527 2619 2603 236 262 24 71 chr9 30256270 30256354 -87606273 + L2 LINE L2 3233 3312 -1 279 54 0 0 chr9 30256720 30256757 -87605870 + (A)n Simple_repeat Simple_repeat 1 37 0 241 374 75 14 chr9 30256819 30256966 -87605661 - MIR SINE MIR 0 262 107 223 244 0 115 chr9 30257211 30257289 -87605338 - MIR SINE MIR -101 161 93 260 325 70 9 chr9 30257869 30257983 -87604644 + MIR3 SINE MIR 38 158 -50 1950 105 60 3 chr9 30258330 30258615 -87604012 - AluSx SINE Alu -11 301 1 368 316 124 10 chr9 30258637 30258830 -87603797 + MIR SINE MIR 45 259 -3 267 347 21 35 chr9 30258869 30259013 -87603614 - MIR SINE MIR -120 142 1 601 278 106 20 chr9 30259226 30259424 -87603203 + MIR SINE MIR 35 249 -13 360 238 119 7 chr9 30259465 30259608 -87603019 + MIR SINE MIR 104 262 0 27 100 0 0 chr9 30260627 30260717 -87601910 + AT_rich Low_complexity Low_complexity 1 90 0 407 252 65 0 chr9 30261301 30261408 -87601219 + L2 LINE L2 3196 3309 -4 24 32 0 0 chr9 30261492 30261523 -87601104 + AT_rich Low_complexity Low_complexity 1 31 0 256 328 85 53 chr9 30261754 30262001 -87600626 + L2 LINE L2 3018 3272 0 21 36 0 0 chr9 30262195 30262223 -87600404 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 30262771 30262793 -87599834 + AT_rich Low_complexity Low_complexity 1 22 0 617 313 48 36 chr9 30263488 30263737 -87598890 - MIR SINE MIR 0 262 11 277 80 20 20 chr9 30264445 30264495 -87598132 + (TA)n Simple_repeat Simple_repeat 2 51 0 309 68 0 0 chr9 30264496 30264540 -87598087 + (GA)n Simple_repeat Simple_repeat 1 44 0 30 83 0 0 chr9 30264825 30264897 -87597730 + AT_rich Low_complexity Low_complexity 1 72 0 25 83 0 0 chr9 30264931 30264991 -87597636 + AT_rich Low_complexity Low_complexity 1 60 0 249 317 32 0 chr9 30265848 30265971 -87596656 - MIR SINE MIR -6 202 75 1279 219 25 7 chr9 30265984 30266310 -87596317 + MER33 DNA MER1_type 1 324 0 207 0 0 0 chr9 30266867 30266890 -87595737 + (TAA)n Simple_repeat Simple_repeat 2 24 0 2112 138 0 0 chr9 30267712 30268024 -87594603 - AluSx SINE Alu 0 312 1 21 36 0 0 chr9 30268349 30268377 -87594250 + AT_rich Low_complexity Low_complexity 1 28 0 434 320 83 45 chr9 30269756 30269887 -87592740 - L2 LINE L2 -143 3129 3004 336 102 0 0 chr9 30269887 30269936 -87592691 + (CA)n Simple_repeat Simple_repeat 2 50 0 434 320 83 45 chr9 30269936 30270301 -87592326 - L2 LINE L2 -268 3004 2623 5867 153 8 39 chr9 30270302 30271753 -87590874 + L1MA2 LINE L1 4621 6013 -291 1931 138 10 3 chr9 30271753 30272044 -87590583 + AluSx SINE Alu 1 293 -19 5867 153 8 39 chr9 30272044 30272328 -87590299 + L1MA2 LINE L1 6013 6304 0 200 338 26 0 chr9 30272358 30272435 -87590192 - L2 LINE L2 -685 2629 2551 2165 99 13 89 chr9 30272928 30273320 -87589307 - L1MA2 LINE L1 -259 6046 5685 2318 81 0 0 chr9 30273523 30273819 -87588808 - AluY SINE Alu -15 296 1 33 56 0 0 chr9 30274964 30275018 -87587609 + AT_rich Low_complexity Low_complexity 1 54 0 580 277 110 15 chr9 30275287 30275506 -87587121 + MIR SINE MIR 17 254 -8 1907 120 141 46 chr9 30275618 30276009 -87586618 + MSTA LTR MaLR 1 428 0 235 394 81 6 chr9 30276343 30276503 -87586124 - MIR3 SINE MIR -7 201 30 965 239 152 115 chr9 30276973 30277564 -87585063 + MLT1E1 LTR MaLR 42 654 0 199 261 108 0 chr9 30277769 30277834 -87584793 - MIR SINE MIR -70 192 121 180 346 48 19 chr9 30277952 30278056 -87584571 + L2 LINE L2 3207 3313 0 333 329 67 7 chr9 30278187 30278336 -87584291 - MIR SINE MIR -74 188 31 2368 45 0 7 chr9 30281763 30282072 -87580555 - AluY SINE Alu 0 307 1 2241 83 3 0 chr9 30282126 30282427 -87580200 - AluY SINE Alu -9 302 1 230 160 20 0 chr9 30282914 30282964 -87579663 + (TA)n Simple_repeat Simple_repeat 2 52 0 253 200 0 14 chr9 30283276 30283346 -87579281 + L1MCa LINE L1 1996 2064 -4362 209 145 16 65 chr9 30283458 30283520 -87579107 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 773 232 28 6 chr9 30283685 30283866 -87578761 + MER5A DNA MER1_type 5 189 0 454 326 118 0 chr9 30284265 30284452 -87578175 - MIR SINE MIR -11 251 43 6282 153 27 4 chr9 30284533 30285615 -87577012 + HSMAR2 DNA Mariner 9 1115 -187 360 0 0 0 chr9 30285819 30285859 -87576768 + (TTA)n Simple_repeat Simple_repeat 3 42 0 3280 40 2 2 chr9 30285859 30286259 -87576368 - L1PA4 LINE L1 -18 6137 5738 1088 163 5 0 chr9 30286271 30286455 -87576172 + HSMAR2 DNA Mariner 1115 1299 -3 21 57 0 0 chr9 30286707 30286742 -87575885 + AT_rich Low_complexity Low_complexity 1 35 0 257 338 165 0 chr9 30288426 30288559 -87574068 + MIR SINE MIR 87 241 -21 1084 306 67 16 chr9 30288561 30288707 -87573920 - LTR16A1 LTR ERVL -2 455 318 525 241 116 60 chr9 30288707 30288906 -87573721 + MER63A DNA MER1_type 1 210 0 1084 306 67 16 chr9 30288906 30289191 -87573436 - LTR16A1 LTR ERVL -139 318 2 1340 307 101 22 chr9 30289853 30290619 -87572008 + L1M3a LINE L1 2 728 -5227 837 158 49 18 chr9 30290616 30290780 -87571847 + L1 LINE L1 5128 5296 -850 * 1968 97 3 45 chr9 30291016 30291304 -87571323 - AluSx SINE Alu -4 308 33 463 340 88 4 chr9 30292142 30292380 -87570247 + MIR SINE MIR 3 260 -2 21 36 0 0 chr9 30292729 30292757 -87569870 + AT_rich Low_complexity Low_complexity 1 28 0 282 316 117 0 chr9 30292967 30293173 -87569454 + HAL1 LINE L1 1188 1417 -1090 314 292 21 0 chr9 30293195 30293291 -87569336 - HAL1 LINE L1 -976 1531 1434 239 250 91 0 chr9 30293394 30293482 -87569145 + HAL1 LINE L1 2323 2418 -89 27 73 0 0 chr9 30293567 30293622 -87569005 + AT_rich Low_complexity Low_complexity 1 55 0 533 259 152 13 chr9 30294348 30294506 -87568121 - MER5A DNA MER1_type 0 189 10 25 51 0 0 chr9 30295103 30295142 -87567485 + AT_rich Low_complexity Low_complexity 1 39 0 6795 66 6 3 chr9 30295406 30296872 -87565755 + L1PA8 LINE L1 4698 6164 -8 408 308 9 3 chr9 30297662 30297800 -87564827 + MIR SINE MIR 10 146 -62 3084 133 144 32 chr9 30298212 30298782 -87563845 + MER51A LTR ERV1 1 634 0 2252 169 48 86 chr9 30298782 30299326 -87563301 + MER51A-int LTR ERV1 1 523 -7293 1795 209 14 41 chr9 30299379 30299903 -87562724 + MER51A-int LTR ERV1 524 1007 -3873 * 8049 137 65 16 chr9 30299873 30301387 -87561240 + HERV9 LTR ERV1 455 2043 -6077 778 151 108 11 chr9 30301397 30301583 -87561044 + HERV9 LTR ERV1 3322 3525 -2421 * 910 334 31 31 chr9 30301581 30302432 -87560195 + HERV9 LTR ERV1 4624 6156 -1600 292 185 19 0 chr9 30302600 30302654 -87559973 + HERV9 LTR ERV1 7488 7542 -274 274 263 26 26 chr9 30302807 30302921 -87559706 + HERV9 LTR ERV1 6662 6775 -1624 1504 168 4 0 chr9 30303399 30303655 -87558972 + HERV9 LTR ERV1 7558 7814 -2 2206 112 87 1 chr9 30303661 30304163 -87558464 + MER51A LTR ERV1 1 616 -18 724 193 0 30 chr9 30304321 30304456 -87558171 - FLAM_A SINE Alu 0 133 3 188 340 10 30 chr9 30304483 30304583 -87558044 + L2 LINE L2 2610 2707 -607 382 308 25 17 chr9 30304917 30305037 -87557590 - MIR SINE MIR -69 139 19 382 225 108 0 chr9 30306033 30306153 -87556474 - L1ME4a LINE L1 -237 5884 5752 2163 121 0 0 chr9 30306716 30307014 -87555613 + AluSg SINE Alu 1 298 -12 1885 143 76 12 chr9 30307068 30307410 -87555217 - L1MB2 LINE L1 0 6171 5808 425 339 135 28 chr9 30307659 30308311 -87554316 + L2 LINE L2 1625 2346 -968 216 388 39 8 chr9 30308641 30308770 -87553857 + MIR3 SINE MIR 69 201 -7 721 297 31 9 chr9 30309218 30309447 -87553180 + MIR SINE MIR 29 262 0 202 315 41 0 chr9 30310113 30310186 -87552441 - MIR SINE MIR -89 173 98 1773 260 58 30 chr9 30310278 30310847 -87551780 + MLT1E LTR MaLR 1 585 -8 23 0 0 0 chr9 30310853 30310876 -87551751 + AT_rich Low_complexity Low_complexity 1 23 0 880 342 26 6 chr9 30310954 30311305 -87551322 + L1M3d LINE L1 423 780 -5523 3142 252 98 25 chr9 30311477 30314028 -87548599 + L1M3d LINE L1 777 3409 -2973 4102 197 33 42 chr9 30314053 30315113 -87547514 + L1M3d LINE L1 4195 5245 -1137 3910 173 17 4 chr9 30315110 30315831 -87546796 - L1P LINE L1 -895 5251 4522 * 228 189 19 19 chr9 30317306 30317379 -87545248 + (TATG)n Simple_repeat Simple_repeat 1 73 0 1631 101 4 0 chr9 30317595 30317822 -87544805 + AluSc SINE Alu 82 309 0 323 68 356 0 chr9 30317858 30317917 -87544710 + MADE1 DNA Mariner 1 80 0 23 78 0 0 chr9 30318597 30318648 -87543979 + AT_rich Low_complexity Low_complexity 1 51 0 221 276 38 57 chr9 30319789 30319894 -87542733 - MIR SINE MIR -103 159 57 23 54 0 0 chr9 30320623 30320660 -87541967 + AT_rich Low_complexity Low_complexity 1 37 0 295 244 47 0 chr9 30320706 30320792 -87541835 + AluJo SINE Alu 62 151 -151 723 351 31 74 chr9 30320793 30321400 -87541227 + L1PA13 LINE L1 798 1378 -6196 4684 249 32 18 chr9 30321503 30323331 -87539296 + L1PA13 LINE L1 2203 4069 -3515 251 262 36 0 chr9 30323338 30323422 -87539205 + L1PA13 LINE L1 4847 4933 -2651 * 5032 143 31 0 chr9 30323411 30324241 -87538386 + L1PA16 LINE L1 5301 6156 -10 28 29 0 0 chr9 30324242 30324277 -87538350 + AT_rich Low_complexity Low_complexity 1 35 0 2371 55 0 19 chr9 30325601 30325909 -87536718 + AluY SINE Alu 1 302 -9 280 286 158 41 chr9 30326339 30326535 -87536092 + MIR SINE MIR 17 235 -27 1448 187 6 48 chr9 30329499 30329814 -87532813 + AluJo SINE Alu 1 302 -10 228 167 0 0 chr9 30330165 30330213 -87532414 + (TG)n Simple_repeat Simple_repeat 1 48 0 * 255 103 0 0 chr9 30330212 30330251 -87532376 + (GA)n Simple_repeat Simple_repeat 1 39 0 1844 101 19 4 chr9 30331013 30331270 -87531357 + AluSq SINE Alu 1 261 -52 181 273 18 0 chr9 30331334 30331389 -87531238 - MIR SINE MIR -82 180 125 853 254 0 5 chr9 30331489 30331678 -87530949 - MER5A DNA MER1_type -1 188 1 500 293 153 22 chr9 30331719 30331941 -87530686 + MIR SINE MIR 2 252 -10 3044 128 64 66 chr9 30332217 30332826 -87529801 + LTR18B LTR ERVL 1 608 -6 848 217 44 6 chr9 30332970 30333150 -87529477 - MER5A DNA MER1_type -1 188 2 2085 135 0 0 chr9 30333362 30333658 -87528969 - AluSx SINE Alu -16 296 1 26 64 0 0 chr9 30334157 30334204 -87528423 + AT_rich Low_complexity Low_complexity 1 47 0 210 219 0 0 chr9 30334404 30334445 -87528182 + GA-rich Low_complexity Low_complexity 2 42 0 1615 290 98 17 chr9 30335249 30335791 -87526836 + MLT1G1 LTR MaLR 3 588 -7 225 65 0 0 chr9 30336144 30336175 -87526452 + (CA)n Simple_repeat Simple_repeat 2 32 0 349 175 33 183 chr9 30336699 30336819 -87525808 - L2 LINE L2 -9 3304 3203 233 244 221 12 chr9 30337851 30337937 -87524690 + MER102b DNA MER1_type 235 338 -3 273 359 46 23 chr9 30339521 30339652 -87522975 + MIR SINE MIR 16 149 -59 519 322 44 67 chr9 30339833 30340193 -87522434 + MLT1L LTR MaLR 127 478 -137 2072 117 27 0 chr9 30340386 30340686 -87521941 - AluSx SINE Alu -4 308 1 5371 122 24 15 chr9 30340814 30341159 -87521468 + L1PB4 LINE L1 5237 5577 -579 1903 112 24 0 chr9 30341159 30341472 -87521155 + AluSc SINE Alu 1 309 0 5371 122 24 15 chr9 30341472 30342038 -87520589 + L1PB4 LINE L1 5577 6156 0 323 315 132 21 chr9 30342208 30342443 -87520184 + L1MC/D LINE L1 5356 5616 -2192 343 242 48 21 chr9 30343010 30343179 -87519448 + L1MC/D LINE L1 5712 5891 -230 21 0 0 0 chr9 30344006 30344027 -87518600 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 30345230 30345251 -87517376 + AT_rich Low_complexity Low_complexity 1 21 0 2096 132 0 0 chr9 30346417 30346713 -87515914 + AluSg SINE Alu 1 296 -14 2125 79 0 0 chr9 30346961 30347227 -87515400 - AluSg SINE Alu -8 302 37 21 0 0 0 chr9 30347268 30347289 -87515338 + AT_rich Low_complexity Low_complexity 1 21 0 428 285 106 0 chr9 30347517 30347668 -87514959 - MIR SINE MIR -11 251 85 273 257 14 14 chr9 30348761 30348831 -87513796 - MIR SINE MIR -118 144 75 431 220 121 38 chr9 30348870 30349002 -87513625 + MER69A DNA AcHobo 33 175 -2 1786 151 0 0 chr9 30349486 30349774 -87512853 - AluSq SINE Alu 0 308 21 233 245 0 0 chr9 30349827 30349880 -87512747 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 270 324 88 14 chr9 30350099 30350247 -87512380 - L2 LINE L2 -189 3083 2925 502 274 0 32 chr9 30350280 30350404 -87512223 + FLAM_A SINE Alu 1 120 -13 234 0 0 0 chr9 30350404 30350430 -87512197 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 396 0 0 0 chr9 30350597 30350641 -87511986 + (TA)n Simple_repeat Simple_repeat 2 45 0 2134 122 0 0 chr9 30350847 30351143 -87511484 - AluSx SINE Alu -16 296 1 221 185 0 19 chr9 30352294 30352348 -87510279 + A-rich Low_complexity Low_complexity 3 55 0 399 292 61 57 chr9 30352559 30352733 -87509894 + MIR SINE MIR 21 194 -52 23 33 0 0 chr9 30352771 30352801 -87509826 + AT_rich Low_complexity Low_complexity 1 30 0 209 349 58 0 chr9 30353389 30353475 -87509152 + MER91C DNA MER1_type 50 140 0 286 259 19 83 chr9 30355011 30355119 -87507508 + L2 LINE L2 3213 3313 0 394 161 35 0 chr9 30356103 30356190 -87506437 + CT-rich Low_complexity Low_complexity 3 92 0 931 295 127 28 chr9 30356360 30356858 -87505769 - MLT1H LTR MaLR -2 547 1 249 363 39 10 chr9 30357516 30357618 -87505009 + MIR3 SINE MIR 89 193 -15 341 290 84 0 chr9 30358218 30358325 -87504302 + MIR SINE MIR 121 236 -26 255 330 9 28 chr9 30358472 30358581 -87504046 - MIR SINE MIR -86 122 16 189 0 0 0 chr9 30359219 30359240 -87503387 + (T)n Simple_repeat Simple_repeat 1 21 0 21 57 0 0 chr9 30359409 30359444 -87503183 + AT_rich Low_complexity Low_complexity 1 35 0 6364 63 12 94 chr9 30359456 30360495 -87502132 - SVA Other Other 0 1386 433 5834 54 17 60 chr9 30360599 30361504 -87501123 - SVA Other Other -520 866 1 25 0 0 0 chr9 30361576 30361601 -87501026 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr9 30361717 30361752 -87500875 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 30362147 30362168 -87500459 + AT_rich Low_complexity Low_complexity 1 21 0 269 277 62 0 chr9 30363185 30363250 -87499377 - L2 LINE L2 -16 3256 3188 440 256 26 103 chr9 30364250 30364406 -87498221 + MER91A DNA MER1_type 9 152 -44 240 268 134 18 chr9 30365447 30365631 -87496996 + MIR SINE MIR 42 247 -15 2330 231 75 26 chr9 30366193 30366463 -87496164 - L1MD2 LINE L1 -73 6286 6017 568 286 30 90 chr9 30366463 30366784 -87495843 - L1MB8 LINE L1 -171 6007 5729 285 51 0 0 chr9 30366784 30366823 -87495804 + (TG)n Simple_repeat Simple_repeat 2 40 0 568 286 30 90 chr9 30366823 30367032 -87495595 - L1MB8 LINE L1 -449 5729 5509 575 216 93 25 chr9 30367321 30367483 -87495144 + MER105 DNA DNA 31 203 -1 24 32 0 0 chr9 30368916 30368947 -87493680 + AT_rich Low_complexity Low_complexity 1 31 0 582 310 42 61 chr9 30370411 30370788 -87491839 - MLT1I LTR MaLR -13 396 27 3074 157 43 12 chr9 30371970 30372556 -87490071 - L1MC3 LINE L1 -2 7783 7180 256 240 40 13 chr9 30372556 30372631 -87489996 - MLT1F1 LTR MaLR -456 111 35 511 175 29 0 chr9 30372631 30372734 -87489893 - L1MC3 LINE L1 -688 7097 6992 300 125 0 18 chr9 30372759 30372815 -87489812 - L1MB8 LINE L1 -5 6173 6119 296 326 30 53 chr9 30373286 30373418 -87489209 - MIR SINE MIR -61 147 19 28 29 0 0 chr9 30373616 30373651 -87488976 + AT_rich Low_complexity Low_complexity 1 35 0 190 374 30 0 chr9 30374754 30374853 -87487774 + L3 LINE CR1 1452 1553 -24 311 285 15 80 chr9 30375837 30375974 -87486653 + L2 LINE L2 3141 3268 -4 269 191 48 0 chr9 30376111 30376174 -87486453 - L1ME LINE L1 -369 5793 5728 * 2142 241 90 10 chr9 30376158 30376495 -87486132 - L1ME LINE L1 -1894 4252 3943 1947 110 57 3 chr9 30376495 30376777 -87485850 - AluSc SINE Alu -12 297 1 2142 241 90 10 chr9 30376777 30377141 -87485486 - L1ME LINE L1 -2203 3943 3495 1474 225 45 5 chr9 30377155 30377555 -87485072 - L1MB8 LINE L1 -1 6177 5762 240 253 25 13 chr9 30377562 30377641 -87484986 - L1ME LINE L1 -2634 3512 3433 418 305 43 65 chr9 30377675 30377954 -87484673 - L1MB8 LINE L1 -463 5658 5386 258 250 0 0 chr9 30378450 30378522 -87484105 + (TA)n Simple_repeat Simple_repeat 1 72 0 295 213 28 28 chr9 30378537 30378645 -87483982 + (TA)n Simple_repeat Simple_repeat 1 108 0 24 0 0 0 chr9 30379905 30379929 -87482698 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 30380030 30380051 -87482576 + AT_rich Low_complexity Low_complexity 1 21 0 265 345 47 14 chr9 30380147 30380306 -87482321 - MIR SINE MIR -57 151 3 21 36 0 0 chr9 30380790 30380818 -87481809 + AT_rich Low_complexity Low_complexity 1 28 0 207 162 0 0 chr9 30380935 30380972 -87481655 + GA-rich Low_complexity Low_complexity 3 39 0 21 0 0 0 chr9 30381089 30381110 -87481517 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 30382132 30382154 -87480473 + AT_rich Low_complexity Low_complexity 1 22 0 256 24 24 24 chr9 30382987 30383029 -87479598 + (TTCTC)n Simple_repeat Simple_repeat 5 46 0 373 300 148 77 chr9 30383517 30384023 -87478604 + L1M2 LINE L1 359 900 -5949 22 0 0 0 chr9 30384028 30384050 -87478577 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr9 30384902 30384942 -87477685 + GC_rich Low_complexity Low_complexity 1 40 0 241 235 0 0 chr9 30385029 30385080 -87477547 + (CACG)n Simple_repeat Simple_repeat 3 53 0 268 360 72 0 chr9 30388004 30388115 -87474512 + L2 LINE L2 3121 3239 -33 198 0 0 0 chr9 30388127 30388149 -87474478 + (ATG)n Simple_repeat Simple_repeat 3 24 0 253 338 120 40 chr9 30388156 30388381 -87474246 - MIR SINE MIR -12 250 8 787 149 13 1 chr9 30388724 30388862 -87473765 + L1MB1 LINE L1 6025 6176 -7 370 271 25 0 chr9 30389018 30389136 -87473491 + L1MC4a LINE L1 5781 5901 -1907 186 43 0 0 chr9 30389340 30389363 -87473264 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1212 196 12 154 chr9 30389473 30389896 -87472731 - MLT1A2 LTR MaLR -11 363 1 616 305 64 4 chr9 30390367 30390600 -87472027 - MIR SINE MIR 0 262 16 287 324 82 60 chr9 30390746 30390796 -87471831 - MIR SINE MIR -29 233 186 2127 130 0 3 chr9 30390796 30391095 -87471532 - AluSg SINE Alu -12 298 1 287 324 82 60 chr9 30391095 30391226 -87471401 - MIR SINE MIR -76 186 48 262 297 14 0 chr9 30391936 30392010 -87470617 + MIR SINE MIR 15 89 -173 1509 194 29 57 chr9 30392295 30392645 -87469982 + MLT1B LTR MaLR 47 386 -4 464 306 172 47 chr9 30393590 30393973 -87468654 - MLT1J LTR MaLR -53 458 28 25 0 0 0 chr9 30394221 30394246 -87468381 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 30394893 30394918 -87467709 + AT_rich Low_complexity Low_complexity 1 25 0 2318 115 3 0 chr9 30395291 30395603 -87467024 - AluSq SINE Alu 0 313 1 552 184 0 18 chr9 30395629 30395743 -87466884 - L1MA9 LINE L1 -36 6276 6165 218 276 10 31 chr9 30395743 30395774 -87466853 + (TA)n Simple_repeat Simple_repeat 2 32 -65 213 65 0 0 chr9 30395774 30395805 -87466822 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 276 10 31 chr9 30395805 30395871 -87466756 + (TA)n Simple_repeat Simple_repeat 32 97 0 437 113 73 104 chr9 30395904 30396046 -87466581 + L1MA9 LINE L1 5975 6104 -196 26 30 0 0 chr9 30396277 30396310 -87466317 + AT_rich Low_complexity Low_complexity 1 33 0 2192 110 0 0 chr9 30396451 30396743 -87465884 + AluSc SINE Alu 1 292 -17 902 252 87 33 chr9 30396907 30397431 -87465196 - L1ME LINE L1 -389 5773 5214 240 286 48 0 chr9 30398843 30398906 -87463721 + L2 LINE L2 3201 3266 -6 698 348 159 21 chr9 30399654 30400637 -87461990 + L3 LINE CR1 76 1193 -384 230 270 79 11 chr9 30401019 30401108 -87461519 + L3 LINE CR1 1452 1546 -31 2638 154 66 16 chr9 30401379 30401700 -87460927 + MER41E LTR ERV1 1 357 -155 2023 117 4 0 chr9 30401700 30402005 -87460622 - AluSp SINE Alu 0 306 1 2638 154 66 16 chr9 30402005 30402170 -87460457 + MER41E LTR ERV1 357 512 0 397 321 130 40 chr9 30402322 30402721 -87459906 + L2 LINE L2 2863 3297 -16 380 314 17 46 chr9 30403402 30403577 -87459050 - MIR SINE MIR -92 170 1 499 223 13 107 chr9 30404268 30404456 -87458171 + MER63A DNA MER1_type 39 210 0 536 165 0 0 chr9 30404890 30404975 -87457652 - AluSg/x SINE Alu -39 270 186 309 296 75 75 chr9 30405296 30405482 -87457145 + MIR3 SINE MIR 23 208 0 1264 237 19 24 chr9 30405760 30406135 -87456492 + MLT1A2 LTR MaLR 1 467 0 263 210 80 70 chr9 30406683 30406783 -87455844 - MIR SINE MIR 0 262 162 414 279 29 15 chr9 30406840 30406976 -87455651 - MIR SINE MIR -105 157 20 238 378 61 65 chr9 30406976 30407254 -87455373 + L2 LINE L2 2990 3266 -6 25 51 0 0 chr9 30407437 30407476 -87455151 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr9 30408682 30408717 -87453910 + AT_rich Low_complexity Low_complexity 1 35 0 1067 251 28 3 chr9 30409573 30409864 -87452763 - L1MA9 LINE L1 -39 6273 5976 563 200 8 8 chr9 30409862 30409992 -87452635 + L1MA9 LINE L1 5816 5945 -367 * 952 243 60 71 chr9 30410869 30411018 -87451609 - LTR16A1 LTR ERVL 0 457 308 1100 156 45 0 chr9 30411018 30411197 -87451430 + MER5A DNA MER1_type 3 189 0 952 243 60 71 chr9 30411197 30411413 -87451214 - LTR16A1 LTR ERVL -149 308 96 28 0 0 0 chr9 30413180 30413208 -87449419 + AT_rich Low_complexity Low_complexity 1 28 0 1967 210 32 0 chr9 30414016 30414420 -87448207 + L1PA16 LINE L1 5740 6156 -10 582 330 89 69 chr9 30415416 30416064 -87446563 + MLT2F LTR ERVL 3 663 0 264 59 0 0 chr9 30416473 30416507 -87446120 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 3131 299 33 18 chr9 30416890 30417915 -87444712 + ERVL-F LTR ERVL 3242 4282 -1482 260 245 142 9 chr9 30418012 30418118 -87444509 + ERVL-F LTR ERVL 5630 5749 -15 316 292 52 0 chr9 30418126 30418222 -87444405 + MLT2F LTR ERVL 4 104 -524 1277 116 0 0 chr9 30418240 30418412 -87444215 + AluSg/x SINE Alu 131 302 -10 909 276 148 30 chr9 30418459 30418893 -87443734 + MLT2F LTR ERVL 179 663 0 345 48 63 16 chr9 30419804 30419867 -87442760 + GA-rich Low_complexity Low_complexity 4 69 0 1218 54 0 7 chr9 30420768 30420941 -87441686 + AluY SINE Alu 144 315 0 183 331 113 33 chr9 30421226 30421377 -87441250 + MIR3 SINE MIR 16 178 -30 673 279 40 87 chr9 30422735 30423057 -87439570 + LTR16B LTR ERVL 3 309 -155 372 333 26 16 chr9 30423666 30423858 -87438769 + L3 LINE CR1 1207 1400 -177 237 125 54 0 chr9 30424466 30424522 -87438105 + (TA)n Simple_repeat Simple_repeat 2 60 0 1997 122 27 61 chr9 30424613 30424989 -87437638 + L1PA16 LINE L1 5801 6163 -3 345 24 0 0 chr9 30425390 30425432 -87437195 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 300 94 12 chr9 30426994 30427154 -87435473 - MLT1L LTR MaLR -301 314 142 832 331 83 2 chr9 30428033 30428441 -87434186 - LTR16A LTR ERVL -2 448 8 2036 336 71 52 chr9 30428718 30430860 -87431767 - MERVL LTR ERVL -664 4821 2721 297 0 0 0 chr9 30430860 30430893 -87431734 + (CA)n Simple_repeat Simple_repeat 2 34 0 2036 336 71 52 chr9 30430893 30430911 -87431716 - MERVL LTR ERVL -2764 2721 2705 270 81 0 0 chr9 30430911 30430948 -87431679 + (TG)n Simple_repeat Simple_repeat 1 37 0 2036 336 71 52 chr9 30430948 30431231 -87431396 - MERVL LTR ERVL -2780 2705 2331 369 301 29 40 chr9 30431298 30431471 -87431156 - MERVL LTR ERVL -2762 2234 2064 428 347 43 20 chr9 30431489 30431789 -87430838 - MERVL LTR ERVL -3493 2161 1855 317 269 32 0 chr9 30431831 30431924 -87430703 - MERVL LTR ERVL -3214 1782 1687 2379 312 49 52 chr9 30431950 30433249 -87429378 - MERVL LTR ERVL -3426 1570 276 248 330 71 0 chr9 30433675 30433787 -87428840 - LTR16A LTR ERVL -322 128 9 216 0 0 0 chr9 30434233 30434257 -87428370 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 226 274 0 32 chr9 30434584 30434646 -87427981 - L2 LINE L2 -32 3281 3222 33 25 0 0 chr9 30435863 30435903 -87426724 + AT_rich Low_complexity Low_complexity 1 40 0 13520 141 43 7 chr9 30436121 30438450 -87424177 + Tigger1 DNA MER2_type 1 2414 -4 207 246 14 72 chr9 30438877 30438946 -87423681 + MIR3 SINE MIR 92 156 -52 327 203 0 0 chr9 30440003 30440077 -87422550 + (TA)n Simple_repeat Simple_repeat 1 74 0 340 324 176 11 chr9 30440188 30440460 -87422167 + L1ME3A LINE L1 4742 5058 -1088 1140 288 60 21 chr9 30440468 30441155 -87421472 + L1ME3A LINE L1 5114 5833 -337 21 57 0 0 chr9 30441236 30441271 -87421356 + AT_rich Low_complexity Low_complexity 1 35 0 42449 55 4 0 chr9 30441660 30447788 -87414839 + L1PA5 LINE L1 3 6154 0 531 312 41 41 chr9 30448514 30448732 -87413895 + MIR SINE MIR 2 219 -43 6814 186 28 46 chr9 30449408 30450922 -87411705 - L1P4 LINE L1 -642 5524 4061 1612 206 3 0 chr9 30450922 30451214 -87411413 - AluJb SINE Alu -17 295 3 6814 186 28 46 chr9 30451214 30451561 -87411066 - L1P4 LINE L1 -2105 4061 3709 3687 136 25 2 chr9 30451561 30452156 -87410471 + L1PA16 LINE L1 5555 6163 -3 629 249 56 42 chr9 30453002 30453215 -87409412 - MER20 DNA MER1_type -3 216 1 199 402 22 0 chr9 30454167 30454259 -87408368 + MIR3 SINE MIR 69 162 -46 255 347 127 20 chr9 30455573 30455723 -87406904 + MIR3 SINE MIR 18 183 -25 2121 172 85 7 chr9 30455874 30456310 -87406317 + MLT2B1 LTR ERVL 1 470 -50 2544 153 13 22 chr9 30456311 30456761 -87405866 - Tigger2 DNA MER2_type 0 2718 2273 337 232 0 0 chr9 30456751 30456820 -87405807 - Tigger2 DNA MER2_type -2649 69 1 * 316 258 0 17 chr9 30456821 30456941 -87405686 + (TA)n Simple_repeat Simple_repeat 2 119 0 278 122 0 0 chr9 30456949 30456990 -87405637 + MLT2B1 LTR ERVL 470 510 -5 555 234 82 35 chr9 30457311 30457482 -87405145 + LTR41 LTR ERVL 1 179 -594 307 77 77 11 chr9 30458178 30458269 -87404358 + (TA)n Simple_repeat Simple_repeat 1 97 0 975 158 0 0 chr9 30458270 30458416 -87404211 - FRAM SINE Alu -23 153 8 803 268 45 32 chr9 30458750 30459127 -87403500 - L1M4 LINE L1 -798 5348 4967 785 176 0 0 chr9 30459604 30459723 -87402904 + FLAM_C SINE Alu 1 119 -14 356 198 0 12 chr9 30459730 30459816 -87402811 + (TG)n Simple_repeat Simple_repeat 1 85 0 581 224 151 23 chr9 30460014 30460318 -87402309 + L1M4 LINE L1 4264 4606 -1540 489 172 0 0 chr9 30460397 30460490 -87402137 + (TATATG)n Simple_repeat Simple_repeat 2 94 0 948 215 39 5 chr9 30460523 30460728 -87401899 - MER20 DNA MER1_type -7 212 1 2335 149 20 2 chr9 30460789 30461185 -87401442 - MER57A LTR ERV1 0 403 1 431 320 51 11 chr9 30461458 30461636 -87400991 + LTR16C LTR ERVL 307 491 0 26 50 0 0 chr9 30461894 30461934 -87400693 + AT_rich Low_complexity Low_complexity 1 40 0 343 373 79 18 chr9 30461935 30462265 -87400362 + L2 LINE L2 1738 2087 -1227 180 355 76 51 chr9 30462590 30462787 -87399840 + L2 LINE L2 2641 2842 -472 224 311 14 14 chr9 30462811 30462885 -87399742 - L2 LINE L2 -47 3225 3152 1110 158 93 23 chr9 30462930 30463006 -87399621 - L1MA9 LINE L1 -70 6242 6173 246 95 0 0 chr9 30463006 30463048 -87399579 + (TG)n Simple_repeat Simple_repeat 2 43 0 1110 158 93 23 chr9 30463048 30463230 -87399397 - L1MA9 LINE L1 -139 6173 5966 1005 231 21 4 chr9 30463238 30463519 -87399108 - L1 LINE L1 -2649 3497 3212 669 149 0 0 chr9 30463536 30463657 -87398970 - L1PA15 LINE L1 -4 6161 6041 3866 18 0 0 chr9 30463659 30464104 -87398523 - L1PA3 LINE L1 0 6155 5711 4679 154 69 2 chr9 30464112 30465034 -87397593 - L1PA15 LINE L1 -133 6032 5039 312 181 114 9 chr9 30465024 30465129 -87397498 - L1 LINE L1 -2926 3220 3105 * 3143 265 49 22 chr9 30465128 30466074 -87396553 + L1M1 LINE L1 2814 3822 -3743 1793 178 0 3 chr9 30466074 30466366 -87396261 + AluSx SINE Alu 14 304 -8 3143 265 49 22 chr9 30466366 30467067 -87395560 + L1M1 LINE L1 3822 4502 -3063 230 348 42 42 chr9 30467390 30467508 -87395119 + MIR SINE MIR 12 129 -133 2015 194 34 12 chr9 30467599 30468012 -87394615 + MSTB LTR MaLR 5 426 0 229 328 0 0 chr9 30468264 30468328 -87394299 + MIR SINE MIR 82 145 -63 210 239 185 24 chr9 30468481 30468597 -87394030 - MIR SINE MIR -67 141 16 505 0 31 0 chr9 30468788 30468853 -87393774 + (TCTA)n Simple_repeat Simple_repeat 1 67 0 238 288 207 0 chr9 30469463 30469574 -87393053 + MIR SINE MIR 57 190 -72 275 335 6 37 chr9 30470260 30470421 -87392206 - L2 LINE L2 -715 2599 2444 424 330 95 6 chr9 30470547 30470726 -87391901 - MIR SINE MIR -67 195 1 191 340 126 29 chr9 30470731 30470969 -87391658 + L3b LINE CR1 1152 1412 -171 340 254 53 44 chr9 30471258 30471296 -87391331 + L1ME4a LINE L1 5323 5359 -762 2338 104 0 0 chr9 30471296 30471605 -87391022 + AluSc SINE Alu 1 309 0 340 254 53 44 chr9 30471605 30471680 -87390947 + L1ME4a LINE L1 5359 5437 -684 1330 241 0 0 chr9 30471721 30471987 -87390640 - AluJb SINE Alu -42 270 5 422 281 48 0 chr9 30472118 30472264 -87390363 - MIR SINE MIR 0 262 110 447 225 115 54 chr9 30472336 30472527 -87390100 + L1ME4a LINE L1 5586 5758 -363 6190 93 19 6 chr9 30472533 30473687 -87388940 + L1PA10 LINE L1 4998 6168 0 301 329 91 13 chr9 30473690 30473921 -87388706 + L1ME4a LINE L1 5827 6075 -46 600 284 41 6 chr9 30474961 30475130 -87387497 + MIR SINE MIR 23 197 -65 1833 126 201 6 chr9 30475301 30475659 -87386968 - MSTA LTR MaLR 0 428 1 437 286 54 49 chr9 30476080 30476136 -87386491 + MIR SINE MIR 37 91 -171 1920 133 67 25 chr9 30476136 30476496 -87386131 - THE1C LTR MaLR 0 375 1 437 286 54 49 chr9 30476496 30476663 -87385964 + MIR SINE MIR 91 261 -1 388 257 105 41 chr9 30477294 30477465 -87385162 - LTR16A LTR ERVL -12 438 257 6967 14 0 0 chr9 30477466 30478260 -87384367 + L1PA2 LINE L1 5360 6153 -2 225 0 0 0 chr9 30478274 30478299 -87384328 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr9 30478317 30478342 -87384285 + AT_rich Low_complexity Low_complexity 1 25 0 683 332 29 4 chr9 30478342 30478583 -87384044 - LTR16A LTR ERVL -196 254 8 26 0 0 0 chr9 30479518 30479544 -87383083 + AT_rich Low_complexity Low_complexity 1 26 0 1943 139 27 35 chr9 30479599 30479973 -87382654 - THE1C LTR MaLR -4 371 1 35 41 0 0 chr9 30481247 30481296 -87381331 + AT_rich Low_complexity Low_complexity 1 49 0 261 102 114 114 chr9 30482379 30482467 -87380160 - MER69 DNA AcHobo -14 2512 2425 239 269 148 108 chr9 30482720 30483099 -87379528 + L2 LINE L2 2920 3313 0 254 292 131 62 chr9 30483149 30483279 -87379348 - MIR3 SINE MIR -40 168 30 388 125 0 115 chr9 30483405 30483509 -87379118 - MER69 DNA AcHobo -14 2512 2421 783 286 64 35 chr9 30483517 30483621 -87379006 - MER69 DNA AcHobo -841 385 286 1700 147 22 0 chr9 30483621 30483743 -87378884 + AluSx SINE Alu 2 120 -192 353 58 19 0 chr9 30483743 30483795 -87378832 + (CA)n Simple_repeat Simple_repeat 2 54 0 1700 147 22 0 chr9 30483795 30483944 -87378683 + AluSx SINE Alu 120 279 -33 450 0 0 0 chr9 30483944 30483994 -87378633 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 783 286 64 35 chr9 30483994 30484262 -87378365 - MER69 DNA AcHobo -939 287 1 503 322 28 6 chr9 30484895 30485072 -87377555 + MIR SINE MIR 23 203 -59 202 340 38 28 chr9 30485223 30485329 -87377298 + L2 LINE L2 3153 3259 -13 21 0 0 0 chr9 30485422 30485443 -87377184 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 30486367 30486388 -87376239 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr9 30486686 30486718 -87375909 + AT_rich Low_complexity Low_complexity 1 32 0 221 0 0 33 chr9 30487990 30488020 -87374607 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 238 49 24 24 chr9 30488464 30488505 -87374122 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr9 30489627 30489649 -87372978 + AT_rich Low_complexity Low_complexity 1 22 0 220 301 49 73 chr9 30491112 30491235 -87371392 - MER5A DNA MER1_type -1 188 69 304 293 12 0 chr9 30491958 30492040 -87370587 - MIR3 SINE MIR -14 194 112 255 235 0 15 chr9 30493176 30493244 -87369383 + MLT1L LTR MaLR 547 613 -2 1368 228 5 76 chr9 30494244 30494639 -87367988 - MLT1A2 LTR MaLR 0 374 8 2337 55 3 0 chr9 30495045 30495336 -87367291 + AluY SINE Alu 1 292 -19 503 279 81 17 chr9 30495642 30495814 -87366813 - MIR SINE MIR -44 218 36 409 224 0 0 chr9 30497339 30497424 -87365203 + MER67D LTR ERV1 1 85 -429 * 1630 210 47 49 chr9 30497407 30497942 -87364685 + MER67C LTR ERV1 12 511 -3 458 263 53 53 chr9 30497950 30498251 -87364376 - L1ME LINE L1 -613 5557 5257 1545 188 7 0 chr9 30498442 30498714 -87363913 - AluJo SINE Alu -26 286 13 288 268 12 0 chr9 30499090 30499172 -87363455 + (TA)n Simple_repeat Simple_repeat 2 84 0 395 233 80 52 chr9 30499219 30499468 -87363159 + L1MC5 LINE L1 7416 7671 -290 2279 96 36 183 chr9 30499468 30499999 -87362628 + MLT2A2 LTR ERVL 1 453 0 2805 60 3 16 chr9 30500027 30500407 -87362220 - L1PA8 LINE L1 -6 6166 5792 1168 35 7 0 chr9 30500407 30500552 -87362075 + L1PA8 LINE L1 5621 5766 -365 1030 174 32 28 chr9 30500549 30500802 -87361825 + L1MC5 LINE L1 7676 7929 -32 * 335 294 17 25 chr9 30500961 30501080 -87361547 - MLT1H LTR MaLR -6 543 426 270 126 0 200 chr9 30501570 30501665 -87360962 - MLT1-int LTR MaLR -208 1163 1088 360 288 77 12 chr9 30501742 30501912 -87360715 + MER58C DNA MER1_type 3 183 -32 235 118 0 78 chr9 30502125 30502176 -87360451 - MLT1-int LTR MaLR -502 869 823 286 243 0 14 chr9 30502746 30502820 -87359807 - MLT1-int LTR MaLR -1662 73 1 3307 175 28 58 chr9 30503628 30503877 -87358750 - MER44D DNA MER2_type -1882 705 450 2017 110 20 10 chr9 30503877 30504169 -87358458 - AluSx SINE Alu -17 295 1 3307 175 28 58 chr9 30504169 30504646 -87357981 - MER44D DNA MER2_type -2137 450 1 569 298 82 37 chr9 30504878 30505123 -87357504 - MIR SINE MIR -1 261 6 21 0 0 0 chr9 30505479 30505500 -87357127 + AT_rich Low_complexity Low_complexity 1 21 0 5301 147 15 65 chr9 30505500 30506783 -87355844 + L1MA6 LINE L1 5065 6299 -1 22 0 0 0 chr9 30506784 30506806 -87355821 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr9 30507573 30507604 -87355023 + AT_rich Low_complexity Low_complexity 1 31 0 438 341 39 0 chr9 30507933 30508115 -87354512 + MIR SINE MIR 48 236 -26 1905 177 17 8 chr9 30508317 30508673 -87353954 + Tigger3(Golem) DNA MER2_type 2 2157 -872 2499 267 111 31 chr9 30508675 30509929 -87352698 - L1M4 LINE L1 -2023 4123 2743 1547 209 11 0 chr9 30509929 30510230 -87352397 - AluJb SINE Alu 0 306 3 2499 267 111 31 chr9 30510230 30510376 -87352251 - L1M4 LINE L1 -3403 2743 2610 408 245 89 118 chr9 30511884 30512055 -87350572 - HAL1b LINE L1 -317 1031 856 207 0 0 0 chr9 30512055 30512078 -87350549 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1912 112 4 0 chr9 30512083 30512359 -87350268 - AluSg SINE Alu -33 277 1 2268 68 14 0 chr9 30512368 30512660 -87349967 - AluY SINE Alu -15 296 1 408 245 89 118 chr9 30512660 30512844 -87349783 - HAL1b LINE L1 -504 844 671 926 160 17 52 chr9 30512873 30512921 -87349706 - L1MD1 LINE L1 -1 6241 6193 2108 119 0 3 chr9 30512921 30513214 -87349413 - AluSx SINE Alu -20 292 1 926 160 17 52 chr9 30513214 30513396 -87349231 - L1MD1 LINE L1 -49 6193 6019 431 186 153 0 chr9 30513398 30513522 -87349105 - L1MD1 LINE L1 -168 6074 5932 3333 127 41 2 chr9 30513640 30514175 -87348452 - L1PB2 LINE L1 0 6151 5596 927 139 65 46 chr9 30514185 30514401 -87348226 - L1MD2 LINE L1 -3 6356 6137 438 69 0 0 chr9 30514406 30514464 -87348163 + (TA)n Simple_repeat Simple_repeat 1 58 0 3359 226 66 14 chr9 30514506 30515443 -87347184 - L1MDa LINE L1 -4887 1653 668 2524 175 83 20 chr9 30515889 30516443 -87346184 - L1MC3 LINE L1 -6 7779 7191 237 300 10 30 chr9 30516487 30516587 -87346040 - MLT1F1 LTR MaLR -457 110 13 273 197 13 0 chr9 30516599 30516675 -87345952 - L1MC3 LINE L1 -739 7046 6970 509 152 9 27 chr9 30517118 30517230 -87345397 - L1 LINE L1 -1656 4490 4381 22 0 0 0 chr9 30517945 30517967 -87344660 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 30518236 30518257 -87344370 + AT_rich Low_complexity Low_complexity 1 21 0 256 330 19 0 chr9 30518359 30518462 -87344165 + CT-rich Low_complexity Low_complexity 2 106 0 275 363 149 40 chr9 30518513 30519304 -87343323 + L3 LINE CR1 700 1576 -1 1673 200 116 35 chr9 30520543 30521007 -87341620 + MLT1D LTR MaLR 1 502 -3 1558 226 48 97 chr9 30521305 30521937 -87340690 - LTR38B LTR ERV1 0 610 10 1934 214 88 39 chr9 30522019 30522532 -87340095 + L1MDa LINE L1 21 558 -5982 234 0 0 0 chr9 30522532 30522558 -87340069 + (CCA)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr9 30522604 30522625 -87340002 + (A)n Simple_repeat Simple_repeat 1 21 0 330 316 43 38 chr9 30522891 30523100 -87339527 + HAL1b LINE L1 464 673 -675 1841 58 0 0 chr9 30523148 30523372 -87339255 + AluY SINE Alu 80 303 -8 445 158 40 0 chr9 30523414 30523490 -87339137 + MER63 DNA MER1_type 672 750 -312 1791 225 59 102 chr9 30523491 30524101 -87338526 + L1MC5 LINE L1 6873 7408 -553 766 101 0 31 chr9 30524101 30524230 -87338397 - L1PA10 LINE L1 0 6168 6044 1791 225 59 102 chr9 30524230 30524675 -87337952 + L1MC5 LINE L1 7408 7871 -90 596 338 73 13 chr9 30525567 30526177 -87336450 - L1ME3A LINE L1 -235 5935 5295 19980 101 23 12 chr9 30526218 30530110 -87332517 - L1PA8 LINE L1 -22 6150 2215 6034 129 44 17 chr9 30530113 30531097 -87331530 + L1P3 LINE L1 346 1355 -5442 5438 139 10 2 chr9 30531102 30532026 -87330601 + L1P3 LINE L1 1849 2828 -3969 382 298 49 18 chr9 30532020 30532349 -87330278 - L1ME3A LINE L1 -839 5307 4969 * 340 281 77 53 chr9 30532376 30532753 -87329874 - L1ME3A LINE L1 -1353 4793 4408 1089 158 0 0 chr9 30532798 30532963 -87329664 - AluSg/x SINE Alu -17 293 129 517 309 52 14 chr9 30533125 30533416 -87329211 - L1ME3A LINE L1 -1949 4197 3896 436 329 44 51 chr9 30533434 30533750 -87328877 - L1ME3A LINE L1 -2392 3754 3441 23 0 0 0 chr9 30534014 30534037 -87328590 + AT_rich Low_complexity Low_complexity 1 23 0 965 296 43 40 chr9 30534292 30534714 -87327913 + LTR16C LTR ERVL 59 481 -10 270 333 22 0 chr9 30536242 30536332 -87326295 + MIR SINE MIR 53 144 -118 315 322 132 48 chr9 30537273 30537630 -87324997 - L2 LINE L2 -8 3305 2919 2083 66 4 0 chr9 30537838 30538111 -87324516 + L1PA3 LINE L1 5882 6155 0 299 276 78 0 chr9 30538157 30538273 -87324354 + Charlie8 DNA MER1_type 98 222 -2195 371 276 57 86 chr9 30538610 30538925 -87323702 - L2 LINE L2 -821 2493 2188 180 356 125 0 chr9 30539129 30539289 -87323338 - L2 LINE L2 -1283 2031 1852 1089 340 88 38 chr9 30539682 30540521 -87322106 - L3 LINE CR1 -206 1371 491 195 353 49 33 chr9 30540584 30540706 -87321921 - L3 LINE CR1 -1188 389 266 4558 51 0 2 chr9 30541050 30541614 -87321013 - L1PA7 LINE L1 -4 6150 5588 215 320 107 0 chr9 30542183 30542258 -87320369 - L2 LINE L2 0 3272 3190 180 0 0 0 chr9 30542716 30542736 -87319891 + (TA)n Simple_repeat Simple_repeat 2 21 0 2163 101 7 0 chr9 30542736 30543033 -87319594 - AluY SINE Alu -12 299 1 674 382 74 32 chr9 30543216 30543936 -87318691 + L2 LINE L2 2216 2965 -349 658 75 9 9 chr9 30544960 30545067 -87317560 + (TA)n Simple_repeat Simple_repeat 2 108 0 291 54 0 0 chr9 30545066 30545103 -87317524 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 356 297 23 57 chr9 30545349 30545524 -87317103 - MIR SINE MIR -74 188 20 660 298 77 77 chr9 30545635 30545849 -87316778 - L2 LINE L2 -35 3278 3066 632 177 20 7 chr9 30545849 30545996 -87316631 + L1MA8 LINE L1 6139 6287 -4 660 298 77 77 chr9 30545996 30546533 -87316094 - L2 LINE L2 -247 3066 2528 181 313 133 23 chr9 30547084 30547212 -87315415 - MIR SINE MIR -64 198 57 30 59 0 0 chr9 30547602 30547653 -87314974 + AT_rich Low_complexity Low_complexity 1 51 0 385 217 63 82 chr9 30548353 30548560 -87314067 + L1MDa LINE L1 2420 2622 -3918 1470 214 158 21 chr9 30548560 30548760 -87313867 + LTR2B LTR ERV1 1 172 -318 321 26 0 0 chr9 30548760 30548798 -87313829 + (TTCTG)n Simple_repeat Simple_repeat 1 38 0 1470 214 158 21 chr9 30548798 30549028 -87313599 + LTR2B LTR ERV1 172 490 0 36893 60 21 15 chr9 30549028 30553890 -87308737 + Harlequin LTR ERV1 1 4895 -2001 14039 63 4 1 chr9 30553878 30555661 -87306966 + Harlequin LTR ERV1 5109 6896 0 * 1874 196 94 26 chr9 30555661 30556120 -87306507 + LTR2B LTR ERV1 1 490 0 1062 284 83 23 chr9 30556127 30556268 -87306359 + L1MDa LINE L1 2624 2755 -3785 5618 56 7 12 chr9 30556268 30557004 -87305623 + L1PA7 LINE L1 5420 6151 -3 1062 284 83 23 chr9 30557004 30557419 -87305208 + L1MDa LINE L1 2755 3213 -3327 * 1230 241 20 3 chr9 30557417 30557758 -87304869 - L1M4 LINE L1 -2135 4011 3665 485 257 16 11 chr9 30557767 30557950 -87304677 - L1M4 LINE L1 -2526 3620 3437 935 253 89 14 chr9 30558068 30558952 -87303675 - L1M4 LINE L1 -2892 3254 2124 881 190 60 74 chr9 30558962 30559231 -87303396 - L1MA9 LINE L1 -38 6274 6010 1298 203 61 0 chr9 30559232 30559527 -87303100 - L1M4 LINE L1 -501 5683 5371 966 239 67 21 chr9 30559523 30559896 -87302731 - L1M4 LINE L1 -2557 3589 3200 * 599 169 59 15 chr9 30559905 30560041 -87302586 - L1MA8 LINE L1 -4 6287 6146 839 115 46 0 chr9 30560041 30560171 -87302456 - L1M2 LINE L1 -662 5629 5494 956 216 69 4 chr9 30560172 30560403 -87302224 - AluJb SINE Alu -3 309 64 4191 152 41 3 chr9 30560459 30561148 -87301479 - LTR62 LTR ERVK -4 715 1 1140 185 39 0 chr9 30561151 30561410 -87301217 - L1M2 LINE L1 -778 5368 5100 3445 218 58 54 chr9 30561432 30562157 -87300470 - MER21B LTR ERV1 -19 844 113 2170 152 45 36 chr9 30562157 30562578 -87300049 - MER61B LTR ERV1 0 425 1 3445 218 58 54 chr9 30562578 30562692 -87299935 - MER21B LTR ERV1 -750 113 1 2191 175 29 18 chr9 30562692 30563143 -87299484 - L1M2 LINE L1 -1042 5104 4649 1018 181 0 36 chr9 30563129 30563322 -87299305 + L1MA9 LINE L1 5608 5793 -519 * 2676 152 57 0 chr9 30563377 30563885 -87298742 + L1MA9 LINE L1 5776 6312 0 4930 230 38 60 chr9 30563888 30565008 -87297619 + L1MD1 LINE L1 3202 4345 -1897 1593 125 34 19 chr9 30565008 30565272 -87297355 + AluY SINE Alu 39 306 -5 4930 230 38 60 chr9 30565272 30567218 -87295409 + L1MD1 LINE L1 4345 6231 -11 1923 204 114 14 chr9 30567403 30567840 -87294787 - MLT1D LTR MaLR -3 502 22 2091 78 0 17 chr9 30569193 30569488 -87293139 + AluY SINE Alu 21 310 -1 22 0 0 0 chr9 30569799 30569821 -87292806 + AT_rich Low_complexity Low_complexity 1 22 0 2233 48 41 7 chr9 30570003 30570294 -87292333 - AluY SINE Alu -10 301 1 189 147 0 0 chr9 30570836 30570870 -87291757 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 211 423 0 10 chr9 30571440 30571544 -87291083 + L3 LINE CR1 1462 1564 -13 5429 123 25 1 chr9 30571795 30572910 -87289717 + L1PA16 LINE L1 5021 6157 -9 23 54 0 0 chr9 30572915 30572952 -87289675 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr9 30574260 30574288 -87288339 + AT_rich Low_complexity Low_complexity 1 28 0 887 187 126 16 chr9 30575223 30575469 -87287158 - ORSL DNA AcHobo -1 274 2 523 285 25 43 chr9 30576918 30577195 -87285432 - L1M4 LINE L1 -1992 4154 3883 254 253 55 22 chr9 30577424 30577515 -87285112 - L1MC4 LINE L1 -26 8016 7923 2709 181 19 91 chr9 30577846 30578563 -87284064 - L1MD2 LINE L1 -10 6349 5684 294 29 0 0 chr9 30578563 30578598 -87284029 + (TG)n Simple_repeat Simple_repeat 1 35 0 214 273 118 50 chr9 30578609 30578770 -87283857 + L2 LINE L2 1609 1780 -1534 246 326 76 42 chr9 30579179 30579323 -87283304 - MIR SINE MIR -65 197 49 370 292 28 101 chr9 30582285 30582463 -87280164 + MIR SINE MIR 70 234 -28 319 340 26 21 chr9 30583044 30583235 -87279392 - MLT1L LTR MaLR -10 605 414 183 80 0 0 chr9 30583318 30583343 -87279284 + (T)n Simple_repeat Simple_repeat 1 25 0 34 42 0 0 chr9 30584990 30585038 -87277589 + AT_rich Low_complexity Low_complexity 1 48 0 787 179 0 15 chr9 30585038 30585172 -87277455 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr9 30585655 30585676 -87276951 + AT_rich Low_complexity Low_complexity 1 21 0 247 333 142 7 chr9 30585773 30585914 -87276713 + MIR SINE MIR 21 180 -82 21 0 0 0 chr9 30586727 30586748 -87275879 + AT_rich Low_complexity Low_complexity 1 21 0 373 299 75 63 chr9 30586804 30587058 -87275569 + L3b LINE CR1 1109 1365 -218 250 287 73 12 chr9 30587736 30587900 -87274727 - L1MC/D LINE L1 -1907 5901 5728 967 71 49 13 chr9 30588922 30589147 -87273480 + CT-rich Low_complexity Low_complexity 1 233 0 552 240 175 39 chr9 30589868 30590176 -87272451 + Charlie2 DNA MER1_type 72 421 -2361 1368 228 11 39 chr9 30590219 30590578 -87272049 - L1MA10 LINE L1 -7 6327 5979 324 235 0 82 chr9 30590586 30590684 -87271943 - L1MC4 LINE L1 -1339 6703 6614 364 182 26 0 chr9 30590706 30590783 -87271844 - L1MA10 LINE L1 -384 5928 5850 1129 257 43 17 chr9 30590796 30591530 -87271097 + L1M1 LINE L1 3029 3791 -3774 739 149 101 120 chr9 30591602 30591810 -87270817 + MER20 DNA MER1_type 16 219 0 830 320 21 42 chr9 30592026 30592404 -87270223 + L2 LINE L2 2943 3312 -1 339 337 63 6 chr9 30593315 30593490 -87269137 + MIR SINE MIR 1 185 -77 739 87 96 0 chr9 30593592 30593707 -87268920 - L1PA10 LINE L1 -4 6164 6039 195 42 0 0 chr9 30594417 30594441 -87268186 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 29 70 0 0 chr9 30596469 30596526 -87266101 + AT_rich Low_complexity Low_complexity 1 57 0 663 303 70 34 chr9 30597483 30598371 -87264256 + L1MEc LINE L1 837 1756 -4640 5251 80 1 3 chr9 30598461 30599173 -87263454 - L1PA7 LINE L1 -1445 4701 3991 6726 64 4 19 chr9 30599174 30600632 -87261995 + L1PA7 LINE L1 4700 6146 -8 914 161 13 7 chr9 30600647 30600802 -87261825 + AluSg/x SINE Alu 153 308 -4 958 287 57 57 chr9 30600838 30601830 -87260797 + L1MEc LINE L1 1908 2877 -3338 4887 177 28 32 chr9 30601833 30603220 -87259407 - L1MA9 LINE L1 -35 6277 4903 490 197 102 7 chr9 30603341 30603478 -87259149 - L1MA9 LINE L1 -1252 4894 4745 6577 109 25 30 chr9 30603496 30604555 -87258072 - L1MA1 LINE L1 -8 6294 5243 2217 127 21 29 chr9 30604555 30604933 -87257694 - THE1C LTR MaLR 0 375 1 6577 109 25 30 chr9 30604933 30604999 -87257628 - L1MA1 LINE L1 -1059 5243 5178 897 202 299 8 chr9 30605001 30605362 -87257265 - L1MA9 LINE L1 -1386 4760 4295 629 253 64 7 chr9 30605366 30605647 -87256980 + L1MEc LINE L1 2873 3169 -3046 1452 217 18 0 chr9 30606043 30606319 -87256308 + AluJo SINE Alu 2 282 -30 1974 143 11 49 chr9 30606475 30606825 -87255802 - MER1B DNA MER1_type 0 337 1 372 338 43 0 chr9 30608665 30608804 -87253823 + MIR SINE MIR 111 255 -7 2048 108 7 0 chr9 30609794 30610073 -87252554 + AluSp SINE Alu 1 281 -32 189 0 0 0 chr9 30610073 30610094 -87252533 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2556 188 5 68 chr9 30611969 30612560 -87250067 + MER41C LTR ERV1 1 554 0 1082 287 39 48 chr9 30612930 30612990 -87249637 - LTR16B LTR ERVL 0 464 405 1912 149 0 17 chr9 30612990 30613292 -87249335 + AluJb SINE Alu 1 297 -15 1082 287 39 48 chr9 30613292 30613694 -87248933 - LTR16B LTR ERVL -59 405 6 636 185 34 7 chr9 30614152 30614298 -87248329 - L1MA1 LINE L1 -1479 4667 4518 381 245 76 43 chr9 30614310 30614494 -87248133 - L1MC5 LINE L1 -65 7896 7707 233 385 83 15 chr9 30614678 30614883 -87247744 + MIR SINE MIR 11 229 -33 3983 203 52 41 chr9 30615251 30615806 -87246821 + L1MB7 LINE L1 4615 5162 -1022 1978 162 65 29 chr9 30615806 30616219 -87246408 + MSTA LTR MaLR 1 428 0 3983 203 52 41 chr9 30616219 30617205 -87245422 + L1MB7 LINE L1 5162 6177 -7 658 268 56 9 chr9 30617498 30617711 -87244916 - MER58A DNA MER1_type -1 223 1 1960 117 3 3 chr9 30617997 30618302 -87244325 - AluSx SINE Alu 0 305 1 22 0 0 0 chr9 30618788 30618810 -87243817 + AT_rich Low_complexity Low_complexity 1 22 0 345 343 191 22 chr9 30620404 30620732 -87241895 + L2 LINE L2 2764 3035 -278 246 105 0 0 chr9 30620732 30620770 -87241857 + (TG)n Simple_repeat Simple_repeat 1 38 0 345 343 191 22 chr9 30620770 30620912 -87241715 + L2 LINE L2 3035 3313 0 489 346 71 31 chr9 30621203 30621751 -87240876 + L2 LINE L2 2660 3232 -81 238 250 0 15 chr9 30621765 30621833 -87240794 + MIR SINE MIR 94 160 -102 42739 40 1 30 chr9 30621835 30628179 -87234448 + L1PA3 LINE L1 2 6155 0 290 304 0 0 chr9 30628180 30628272 -87234355 + MIR SINE MIR 157 248 -14 276 30 0 0 chr9 30628297 30628330 -87234297 + (CAT)n Simple_repeat Simple_repeat 2 34 0 730 276 18 9 chr9 30628420 30628637 -87233990 - MLT1G LTR MaLR -6 584 366 273 29 0 0 chr9 30629582 30629616 -87233011 + (CA)n Simple_repeat Simple_repeat 1 34 0 356 281 154 23 chr9 30629643 30629864 -87232763 + L1ME4a LINE L1 5831 6080 -41 5930 153 12 2 chr9 30629882 30631447 -87231180 - L1PB1 LINE L1 -7 6144 4564 7825 163 11 4 chr9 30631454 30632133 -87230494 - L1PA13 LINE L1 0 6163 5490 1992 140 10 0 chr9 30632133 30632425 -87230202 - AluSx SINE Alu -17 295 1 7825 163 11 4 chr9 30632425 30633978 -87228649 - L1PA13 LINE L1 -673 5490 3908 857 321 90 24 chr9 30633996 30634420 -87228207 + L1PA13 LINE L1 772 1258 -5529 5275 191 17 12 chr9 30634423 30636058 -87226569 + L1PA13 LINE L1 1396 3065 -3732 6571 124 41 49 chr9 30637168 30638405 -87224222 - Tigger3b DNA MER2_type -4 1227 1 21 57 0 0 chr9 30638466 30638501 -87224126 + AT_rich Low_complexity Low_complexity 1 35 0 318 314 13 6 chr9 30638518 30638539 -87224088 - L1MA10 LINE L1 0 6334 6314 1597 225 40 14 chr9 30638539 30638962 -87223665 - L1ME1 LINE L1 -12 6154 5721 863 293 61 32 chr9 30639058 30639532 -87223095 - L1MCc LINE L1 -5912 511 24 1050 294 79 45 chr9 30639593 30640688 -87221939 - L1MCc LINE L1 -4824 2117 1061 414 0 0 0 chr9 30640688 30640734 -87221893 + (TG)n Simple_repeat Simple_repeat 2 47 0 1595 132 4 23 chr9 30640735 30640993 -87221634 - AluSq SINE Alu -16 297 45 1050 294 79 45 chr9 30640993 30641169 -87221458 - L1MCc LINE L1 -5879 1062 802 10538 228 21 31 chr9 30641178 30644723 -87217904 - L1PA12 LINE L1 -2984 4600 9 252 308 0 8 chr9 30645278 30645398 -87217229 + L1M4 LINE L1 2593 2711 -3435 563 286 108 9 chr9 30647654 30647867 -87214760 - MIR SINE MIR 0 262 29 212 271 0 0 chr9 30647946 30648005 -87214622 + (TAA)n Simple_repeat Simple_repeat 2 60 0 1345 237 30 55 chr9 30648062 30648459 -87214168 + MLT1B LTR MaLR 1 387 -3 254 369 112 17 chr9 30648459 30648638 -87213989 - MIR SINE MIR -63 199 4 21 36 0 0 chr9 30649099 30649127 -87213500 + AT_rich Low_complexity Low_complexity 1 28 0 3365 219 47 40 chr9 30649398 30649626 -87213001 - L1MB8 LINE L1 0 6178 5953 2045 105 0 51 chr9 30649626 30649939 -87212688 - AluSx SINE Alu -12 300 4 3365 219 47 40 chr9 30649939 30650629 -87211998 - L1MB8 LINE L1 -225 5953 5254 1957 240 53 7 chr9 30650639 30651189 -87211438 - L1MB8 LINE L1 -1833 4313 3739 320 209 26 52 chr9 30651511 30651626 -87211001 + CT-rich Low_complexity Low_complexity 6 117 0 288 53 0 0 chr9 30651637 30651675 -87210952 + (TG)n Simple_repeat Simple_repeat 1 38 0 5423 46 1 4 chr9 30652563 30653241 -87209386 - L1PA7 LINE L1 -2 6152 5477 2597 96 96 5 chr9 30653519 30653882 -87208745 + MLT2A1 LTR ERVL 1 406 -38 621 0 0 0 chr9 30653882 30653951 -87208676 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2597 96 96 5 chr9 30653951 30653994 -87208633 + MLT2A1 LTR ERVL 406 444 0 193 289 58 29 chr9 30656850 30656954 -87205673 - L2 LINE L2 -265 3048 2942 294 233 0 41 chr9 30657085 30657158 -87205469 + L1M4 LINE L1 2677 2746 -3400 1346 224 21 25 chr9 30657163 30657489 -87205138 - MLT1A1 LTR MaLR -40 325 1 2075 259 83 31 chr9 30657606 30658160 -87204467 - L1ME1 LINE L1 -1 6976 6452 1917 170 3 26 chr9 30658160 30658502 -87204125 - MER1B DNA MER1_type -3 334 1 2075 259 83 31 chr9 30658502 30659572 -87203055 - L1ME1 LINE L1 -525 6452 5127 1833 169 23 0 chr9 30660448 30660791 -87201836 - L1MB1 LINE L1 0 6168 5818 463 127 0 0 chr9 30660792 30660863 -87201764 + L1MB1 LINE L1 5743 5813 -355 683 257 69 31 chr9 30660898 30661159 -87201468 - L1ME1 LINE L1 -4788 2171 1901 312 283 180 35 chr9 30661497 30661752 -87200875 - L1ME1 LINE L1 -6309 546 2 3289 239 60 34 chr9 30661934 30663464 -87199163 + L1MD2 LINE L1 4787 6349 -10 21 36 0 0 chr9 30663496 30663524 -87199103 + AT_rich Low_complexity Low_complexity 1 28 0 388 314 73 47 chr9 30663699 30663983 -87198644 - L1ME4a LINE L1 -248 5873 5575 2003 120 3 3 chr9 30663983 30664274 -87198353 + AluSx SINE Alu 1 291 -21 388 314 73 47 chr9 30664274 30664371 -87198256 - L1ME4a LINE L1 -546 5575 5482 26 0 0 0 chr9 30664448 30664474 -87198153 + AT_rich Low_complexity Low_complexity 1 26 0 5284 76 1 37 chr9 30665478 30666237 -87196390 + L1PA8 LINE L1 5437 6168 -4 200 206 0 0 chr9 30666516 30666550 -87196077 + polypurine Low_complexity Low_complexity 1 34 0 21 0 0 0 chr9 30667210 30667231 -87195396 + AT_rich Low_complexity Low_complexity 1 21 0 295 340 11 11 chr9 30667436 30667530 -87195097 + L2 LINE L2 3169 3262 -10 238 311 75 19 chr9 30667620 30667726 -87194901 - L3 LINE CR1 -82 1495 1384 340 313 52 0 chr9 30668017 30668132 -87194495 - MIR SINE MIR 0 262 142 33 73 0 0 chr9 30668882 30668950 -87193677 + AT_rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr9 30669208 30669232 -87193395 + AT_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr9 30669291 30669335 -87193292 + AT_rich Low_complexity Low_complexity 1 44 0 468 333 135 0 chr9 30669608 30669830 -87192797 - MIR SINE MIR 0 262 11 324 306 9 9 chr9 30669863 30669974 -87192653 - MIR SINE MIR -30 232 122 198 316 103 43 chr9 30671059 30671176 -87191451 + MIR SINE MIR 68 191 -71 187 261 22 0 chr9 30671367 30671413 -87191214 - L2 LINE L2 -1 3271 3225 28 61 0 0 chr9 30671541 30671590 -87191037 + AT_rich Low_complexity Low_complexity 1 49 0 380 306 42 60 chr9 30671749 30671965 -87190662 + L2 LINE L2 3102 3313 0 278 330 32 0 chr9 30672029 30672123 -87190504 + L2 LINE L2 3201 3297 -16 23 54 0 0 chr9 30672729 30672766 -87189861 + AT_rich Low_complexity Low_complexity 1 37 0 282 194 133 10 chr9 30673489 30673587 -87189040 - MER69 DNA AcHobo -83 2443 2334 1356 162 35 69 chr9 30673668 30674014 -87188613 + L1MA7 LINE L1 5957 6290 -1 3859 141 47 36 chr9 30674645 30675348 -87187279 - MER50 LTR ERV1 -23 711 1 2080 61 87 0 chr9 30676692 30676969 -87185658 - AluY SINE Alu -10 301 1 281 180 30 40 chr9 30678018 30678118 -87184509 + (TATATG)n Simple_repeat Simple_repeat 4 102 0 225 103 51 0 chr9 30678167 30678206 -87184421 + L1MC4 LINE L1 6663 6703 -1339 * 270 133 0 0 chr9 30678178 30678223 -87184404 - L1MC4 LINE L1 -1339 6703 6659 23 68 0 0 chr9 30678427 30678471 -87184156 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr9 30678747 30678769 -87183858 + AT_rich Low_complexity Low_complexity 1 22 0 301 356 64 4 chr9 30678972 30679239 -87183388 + L1MCc LINE L1 1253 1535 -4888 582 311 60 34 chr9 30679443 30679980 -87182647 + L1MCc LINE L1 1996 2546 -4576 520 288 88 15 chr9 30680074 30680279 -87182348 + L1MEc LINE L1 45 264 -6132 308 298 11 0 chr9 30680549 30680643 -87181984 + ERVL-B1 LTR ERVL 316 410 -5354 2529 99 14 14 chr9 30680643 30681007 -87181620 - THE1B LTR MaLR 0 364 1 8670 137 48 45 chr9 30681007 30682581 -87180046 - THE1B-int LTR MaLR 0 1580 1 2423 117 19 14 chr9 30682581 30682941 -87179686 - THE1B LTR MaLR 0 364 3 3302 212 31 18 chr9 30682941 30683620 -87179007 + ERVL-B1 LTR ERVL 404 1091 -4673 * 5163 182 16 35 chr9 30683612 30683757 -87178870 + ERVL-B1 LTR ERVL 4729 4875 -889 2344 92 0 0 chr9 30683757 30684060 -87178567 - AluY SINE Alu -8 303 1 5163 182 16 35 chr9 30684060 30684956 -87177671 + ERVL-B1 LTR ERVL 4875 5750 -14 987 223 40 92 chr9 30684963 30685335 -87177292 + MLT2B1 LTR ERVL 1 391 -23 333 0 0 0 chr9 30685335 30685372 -87177255 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr9 30685371 30685399 -87177228 + (GA)n Simple_repeat Simple_repeat 2 29 0 * 987 223 40 92 chr9 30685372 30685454 -87177173 + MLT2B1 LTR ERVL 391 412 -2 1001 217 37 94 chr9 30685454 30685804 -87176823 + L1MB7 LINE L1 5739 6068 -116 569 214 8 8 chr9 30685808 30685925 -87176702 - LTR28 LTR ERV1 -4 1016 900 774 211 94 79 chr9 30685965 30686642 -87175985 - LTR1 LTR ERV1 -39 981 1 515 204 0 0 chr9 30686644 30686757 -87175870 + L1MB8 LINE L1 6065 6177 -1 859 259 56 26 chr9 30686802 30687142 -87175485 + L1MEc LINE L1 1701 2050 -4346 1322 252 86 49 chr9 30687149 30687222 -87175405 + Charlie5 DNA MER1_type 1 63 -662 2362 119 23 0 chr9 30687222 30687575 -87175052 + L1PA14 LINE L1 5799 6159 -2 1322 252 86 49 chr9 30687575 30688108 -87174519 + Charlie5 DNA MER1_type 63 622 -103 2643 237 53 29 chr9 30688115 30689039 -87173588 + Charlie5 DNA MER1_type 1101 2046 -566 2457 126 14 12 chr9 30689054 30689296 -87173331 - L1MA2 LINE L1 0 6304 6059 1958 135 7 0 chr9 30689296 30689592 -87173035 - AluSg SINE Alu -12 298 1 2457 126 14 12 chr9 30689592 30689769 -87172858 - L1MA2 LINE L1 -245 6059 5884 289 130 22 0 chr9 30689769 30689815 -87172812 - Alu SINE Alu -259 49 3 1025 225 36 41 chr9 30689816 30690203 -87172424 + Charlie5 DNA MER1_type 2239 2623 0 578 271 65 31 chr9 30690440 30690669 -87171958 + L1MEc LINE L1 110 346 -6050 538 276 79 20 chr9 30690677 30690880 -87171747 - L1ME LINE L1 -655 5509 5295 239 200 18 0 chr9 30690883 30690938 -87171689 + (TA)n Simple_repeat Simple_repeat 1 56 0 3809 238 78 25 chr9 30690938 30691190 -87171437 - L1ME LINE L1 -874 5272 5035 2401 243 14 4 chr9 30691190 30691746 -87170881 - MER68 LTR ERV1 0 562 1 3809 238 78 25 chr9 30691746 30692887 -87169740 - L1ME LINE L1 -1111 5035 3805 242 344 42 0 chr9 30693258 30693354 -87169273 + L2 LINE L2 3214 3313 0 680 258 144 11 chr9 30694316 30694580 -87168047 + MER46C DNA MER2_type 14 312 -26 2010 128 0 0 chr9 30694582 30694908 -87167719 - AluSx SINE Alu 0 326 1 283 273 99 33 chr9 30695009 30695130 -87167497 - MIR SINE MIR -78 184 56 303 28 0 0 chr9 30696381 30696417 -87166210 + (TA)n Simple_repeat Simple_repeat 2 37 0 725 183 8 0 chr9 30696417 30696548 -87166079 - FLAM_A SINE Alu -3 139 8 448 297 167 45 chr9 30696550 30697007 -87165620 + L2 LINE L2 1943 2343 -971 402 114 14 0 chr9 30697007 30697077 -87165550 - L1MA8 LINE L1 -4 6287 6217 2006 80 0 0 chr9 30697078 30697329 -87165298 + AluSx SINE Alu 1 251 -61 448 297 167 45 chr9 30697329 30697360 -87165267 + L2 LINE L2 2342 2493 -821 1324 176 30 20 chr9 30697397 30697698 -87164929 - L1MB5 LINE L1 -3 6669 6366 2173 233 35 18 chr9 30697718 30698400 -87164227 - L1MB5 LINE L1 -797 5847 5154 4604 275 77 31 chr9 30698405 30702018 -87160609 - L1MB5 LINE L1 -1639 5005 1085 1975 141 13 0 chr9 30702018 30702316 -87160311 - AluY SINE Alu -9 302 1 4604 275 77 31 chr9 30702316 30703404 -87159223 - L1MB5 LINE L1 -5559 1085 48 263 413 62 23 chr9 30703488 30703747 -87158880 + L2 LINE L2 2566 2834 -480 278 240 0 0 chr9 30703950 30704000 -87158627 + Tigger3(Golem) DNA MER2_type 19 68 -2961 3623 166 34 7 chr9 30704005 30704686 -87157941 - HSMAR2 DNA Mariner 0 1302 604 1419 237 37 5 chr9 30704686 30704952 -87157675 + L1PA15 LINE L1 2180 2463 -3683 303 28 0 0 chr9 30704952 30704988 -87157639 + (TG)n Simple_repeat Simple_repeat 1 36 0 1419 237 37 5 chr9 30704988 30705097 -87157530 + L1PA15 LINE L1 2463 2567 -3579 2055 147 3 12 chr9 30705106 30705446 -87157181 - MER61B LTR ERV1 -29 396 60 10043 219 16 7 chr9 30705469 30708445 -87154182 + L1PA15 LINE L1 2837 5833 -332 24 0 0 0 chr9 30708468 30708492 -87154135 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 30708539 30708563 -87154064 + AT_rich Low_complexity Low_complexity 1 24 0 217 349 68 15 chr9 30708607 30708739 -87153888 + MIR SINE MIR 74 212 -50 275 320 117 46 chr9 30710436 30710717 -87151910 + L2 LINE L2 1813 2113 -1201 206 128 26 0 chr9 30710851 30710890 -87151737 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 296 184 0 chr9 30710900 30710998 -87151629 + L2 LINE L2 2261 2376 -938 263 309 53 126 chr9 30711243 30711505 -87151122 - L2 LINE L2 -551 2763 2521 598 130 0 17 chr9 30712870 30712985 -87149642 + (TTCC)n Simple_repeat Simple_repeat 4 116 0 24 32 0 0 chr9 30713152 30713183 -87149444 + AT_rich Low_complexity Low_complexity 1 31 0 183 314 76 67 chr9 30713464 30713569 -87149058 + MER5B DNA MER1_type 23 128 -50 * 222 379 43 0 chr9 30713477 30713593 -87149034 - MER5A DNA MER1_type -35 154 34 226 73 49 0 chr9 30714097 30714138 -87148489 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4761 169 68 20 chr9 30714267 30715275 -87147352 - L1MC2 LINE L1 -9 6335 5279 2754 150 9 0 chr9 30716633 30717092 -87145535 - L1PA16 LINE L1 0 6166 5704 1191 177 4 1 chr9 30717094 30717327 -87145300 + L1PA16 LINE L1 5459 5695 -473 1253 283 92 40 chr9 30717352 30718121 -87144506 + L2 LINE L2 2367 3168 -145 4151 86 0 4 chr9 30718536 30719092 -87143535 + MER41A LTR ERV1 1 554 0 21384 151 80 53 chr9 30719176 30720463 -87142164 + MER41A-int LTR ERV1 1 1251 -4695 1990 131 3 10 chr9 30720463 30720761 -87141866 - AluSx SINE Alu -15 297 2 21384 151 80 53 chr9 30720761 30720867 -87141760 + MER41A-int LTR ERV1 1251 1353 -4593 1868 137 29 35 chr9 30720867 30721181 -87141446 + AluSx SINE Alu 1 312 0 21384 151 80 53 chr9 30721181 30725487 -87137140 + MER41A-int LTR ERV1 1353 5942 -4 4080 89 4 0 chr9 30725489 30726041 -87136586 + MER41A LTR ERV1 1 554 0 27 49 0 0 chr9 30726408 30726449 -87136178 + AT_rich Low_complexity Low_complexity 1 41 0 1900 41 0 0 chr9 30726572 30726793 -87135834 + AluY SINE Alu 86 306 -5 1110 209 171 84 chr9 30727754 30728182 -87134445 + MLT1D LTR MaLR 1 467 0 611 172 7 86 chr9 30729531 30729682 -87132945 + MER97c DNA MER1_type? 40 178 -912 531 263 39 52 chr9 30729807 30730039 -87132588 - L1ME2 LINE L1 -1 6163 5935 34 55 0 0 chr9 30730281 30730336 -87132291 + AT_rich Low_complexity Low_complexity 1 55 0 1232 255 107 41 chr9 30731156 30731195 -87131432 - MLT2B1 LTR ERVL 0 520 485 559 48 12 12 chr9 30731195 30731279 -87131348 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 1232 255 107 41 chr9 30731279 30731725 -87130902 - MLT2B1 LTR ERVL -35 485 3 288 260 55 0 chr9 30731733 30731806 -87130821 + MER103 DNA DNA 28 104 -62 1974 123 0 4 chr9 30732269 30732545 -87130082 - AluSx SINE Alu -35 277 3 1603 161 122 6 chr9 30733120 30733456 -87129171 + THE1C LTR MaLR 1 375 0 8840 143 11 54 chr9 30733458 30735106 -87127521 + THE1C-int LTR MaLR 3 1580 0 1765 191 38 16 chr9 30735106 30735473 -87127154 + THE1C LTR MaLR 1 375 0 292 299 80 58 chr9 30735853 30735990 -87126637 - MIR3 SINE MIR -2 206 67 342 184 40 40 chr9 30736723 30736799 -87125828 - MIR SINE MIR -106 156 81 23 33 0 0 chr9 30736992 30737022 -87125605 + AT_rich Low_complexity Low_complexity 1 30 0 462 273 61 71 chr9 30737030 30737422 -87125205 + L1ME4a LINE L1 5638 6025 -96 1913 126 34 7 chr9 30737878 30738171 -87124456 - AluSx SINE Alu -11 301 1 21 36 0 0 chr9 30739262 30739290 -87123337 + AT_rich Low_complexity Low_complexity 1 28 0 320 369 37 5 chr9 30740543 30740730 -87121897 + MIR SINE MIR 64 256 -6 467 321 42 7 chr9 30740884 30741079 -87121548 - MIR3 SINE MIR -1 207 1 2149 202 92 25 chr9 30742559 30743083 -87119544 + MER89 LTR ERV1 1 559 0 1906 127 69 0 chr9 30743831 30744122 -87118505 + AluSx SINE Alu 1 311 -1 267 309 139 46 chr9 30745341 30745507 -87117120 - MIR3 SINE MIR -64 144 2 275 329 12 0 chr9 30745616 30745698 -87116929 - L2 LINE L2 0 3313 3231 28 71 0 0 chr9 30747493 30747549 -87115078 + AT_rich Low_complexity Low_complexity 1 56 0 1205 124 46 0 chr9 30747820 30748014 -87114613 + L1MA2 LINE L1 6102 6304 0 21 36 0 0 chr9 30748149 30748177 -87114450 + AT_rich Low_complexity Low_complexity 1 28 0 686 253 3 140 chr9 30748380 30748672 -87113955 + L1MDa LINE L1 17 268 -6272 739 247 12 0 chr9 30748674 30748836 -87113791 + L1MC1 LINE L1 100 263 -6279 1939 259 54 39 chr9 30748870 30749310 -87113317 + L1MC1 LINE L1 347 802 -5740 180 0 0 0 chr9 30749310 30749330 -87113297 + (CA)n Simple_repeat Simple_repeat 1 20 0 1939 259 54 39 chr9 30749330 30749538 -87113089 + L1MC1 LINE L1 802 1005 -5537 1101 227 99 16 chr9 30749536 30749919 -87112708 + L1MC1 LINE L1 1682 2096 -4550 * 304 209 0 12 chr9 30749948 30750034 -87112593 + L1MC1 LINE L1 2231 2315 -4331 2041 237 53 33 chr9 30750088 30750939 -87111688 + L1MC1 LINE L1 2537 3418 -3226 1209 235 98 21 chr9 30750950 30751152 -87111475 - MLT1A2 LTR MaLR -9 365 125 1337 153 133 55 chr9 30751152 30751498 -87111129 - THE1C LTR MaLR -2 373 1 1209 235 98 21 chr9 30751498 30751631 -87110996 - MLT1A2 LTR MaLR -249 125 4 939 245 203 33 chr9 30751632 30751837 -87110790 + L1MC1 LINE L1 3419 3588 -3056 592 197 14 7 chr9 30751837 30751979 -87110648 + L1MA8 LINE L1 6143 6285 -6 939 245 203 33 chr9 30751979 30752345 -87110282 + L1MC1 LINE L1 3588 4087 -2557 * 1343 209 50 0 chr9 30752343 30752645 -87109982 + L1MC1 LINE L1 5871 6187 -495 989 224 12 8 chr9 30752645 30752904 -87109723 + L1MA9 LINE L1 6015 6274 -38 * 3231 261 103 27 chr9 30752899 30754651 -87107976 + L1MD2 LINE L1 2489 4402 -2138 12523 104 14 0 chr9 30754651 30757270 -87105357 + L1PA7 LINE L1 3514 6149 -5 3231 261 103 27 chr9 30757270 30757346 -87105281 + L1MD2 LINE L1 4402 4471 -2069 1529 193 27 7 chr9 30757348 30757648 -87104979 + L1MC1 LINE L1 6406 6711 -120 2067 254 58 10 chr9 30757689 30757709 -87104918 + L1MD2 LINE L1 5633 5651 -1102 2893 185 39 7 chr9 30757709 30758319 -87104308 + L1PB4 LINE L1 5526 6155 -1 2067 254 58 10 chr9 30758319 30758953 -87103674 + L1MD2 LINE L1 5651 6558 -195 279 114 0 0 chr9 30758953 30758997 -87103630 + (CA)n Simple_repeat Simple_repeat 1 44 0 2067 254 58 10 chr9 30758997 30759188 -87103439 + L1MD2 LINE L1 6558 6739 -14 246 357 31 10 chr9 30760166 30760264 -87102363 - L2 LINE L2 -5 3267 3168 1931 188 59 10 chr9 30760278 30760683 -87101944 + MSTB1 LTR MaLR 5 429 -3 206 62 31 0 chr9 30761177 30761209 -87101418 + (TA)n Simple_repeat Simple_repeat 2 34 0 207 139 0 0 chr9 30761324 30761360 -87101267 + (CAATA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr9 30761896 30761924 -87100703 + AT_rich Low_complexity Low_complexity 1 28 0 1456 174 85 26 chr9 30763702 30764042 -87098585 + MER46B DNA MER2_type 1 235 -1 199 271 254 51 chr9 30765345 30765463 -87097164 + MIR3 SINE MIR 60 201 -7 2312 240 96 50 chr9 30765713 30766223 -87096404 + L1ME1 LINE L1 4645 5130 -1036 2059 129 13 0 chr9 30766223 30766526 -87096101 + AluSg SINE Alu 1 307 -3 2312 240 96 50 chr9 30766526 30767475 -87095152 + L1ME1 LINE L1 5130 6162 -4 25 75 0 0 chr9 30767534 30767587 -87095040 + AT_rich Low_complexity Low_complexity 1 53 0 328 304 97 51 chr9 30769178 30769415 -87093212 + HAL1 LINE L1 803 1050 -1457 21 0 0 0 chr9 30769433 30769454 -87093173 + AT_rich Low_complexity Low_complexity 1 21 0 2020 227 38 22 chr9 30769732 30770229 -87092398 + MLT1D LTR MaLR 1 505 0 267 381 8 8 chr9 30770394 30770512 -87092115 - L2 LINE L2 -17 3296 3179 196 256 0 0 chr9 30773907 30773946 -87088681 + MIR SINE MIR 146 184 -78 1744 154 18 0 chr9 30773975 30774138 -87088489 - AluJo SINE Alu -27 285 113 183 100 0 0 chr9 30774138 30774168 -87088459 + (TG)n Simple_repeat Simple_repeat 1 30 0 1744 154 18 0 chr9 30774168 30774284 -87088343 - AluJo SINE Alu -199 113 1 26 50 0 0 chr9 30774383 30774423 -87088204 + AT_rich Low_complexity Low_complexity 1 40 0 232 278 93 9 chr9 30775532 30775640 -87086987 - MER112 DNA MER1_type -78 182 66 500 248 78 14 chr9 30776010 30776151 -87086476 + L1MA6 LINE L1 469 618 -6871 * 5959 208 46 4 chr9 30776146 30777553 -87085074 - L1MA4 LINE L1 -1832 4314 2848 4874 183 35 20 chr9 30777551 30779525 -87083102 + L1MA4 LINE L1 4298 6299 -1 * 909 298 25 63 chr9 30779551 30779994 -87082633 + L1MA6 LINE L1 617 1042 -6447 11042 199 69 31 chr9 30780058 30785549 -87077078 + L1MA6 LINE L1 2008 7718 -1 204 325 52 93 chr9 30785868 30785908 -87076719 - MIR SINE MIR -28 234 194 2185 92 17 17 chr9 30785908 30786202 -87076425 + AluSg SINE Alu 3 296 -14 204 325 52 93 chr9 30786202 30786355 -87076272 - MIR SINE MIR -68 194 49 592 317 102 40 chr9 30786777 30787102 -87075525 + LTR16A LTR ERVL 16 360 -90 1843 215 67 33 chr9 30787484 30787964 -87074663 + MLT1D LTR MaLR 1 496 -9 243 0 0 0 chr9 30789004 30789031 -87073596 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 71 0 0 chr9 30789466 30789508 -87073119 + AT_rich Low_complexity Low_complexity 1 42 0 1321 246 78 10 chr9 30791588 30791987 -87070640 + L1MC4a LINE L1 7087 7512 -296 * 5673 103 8 17 chr9 30791977 30792504 -87070123 + L1PA13 LINE L1 5302 5821 -342 2285 110 0 0 chr9 30792504 30792803 -87069824 + AluY SINE Alu 3 301 -10 5673 103 8 17 chr9 30792803 30793144 -87069483 + L1PA13 LINE L1 5821 6163 0 1258 213 0 27 chr9 30793175 30793438 -87069189 + AluJb SINE Alu 1 256 -56 372 133 0 0 chr9 30793458 30793518 -87069109 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 2217 111 0 0 chr9 30793748 30794046 -87068581 + AluY SINE Alu 1 298 -13 317 0 0 65 chr9 30794199 30794245 -87068382 + (A)n Simple_repeat Simple_repeat 1 43 0 1944 60 38 19 chr9 30794981 30795248 -87067379 + HERVK14 LTR ERVK 5488 5759 -186 274 249 0 0 chr9 30795248 30795310 -87067317 + MER41C LTR ERV1 1 53 -501 682 94 94 34 chr9 30795310 30795427 -87067200 + HERVK14 LTR ERVK 5822 5945 0 1825 99 32 179 chr9 30795430 30795833 -87066794 + LTR14B LTR ERVK 1 608 0 2583 181 121 42 chr9 30795834 30796093 -87066534 - L1MA7 LINE L1 -257 6034 5797 1960 133 7 23 chr9 30796093 30796402 -87066225 - AluSp SINE Alu -9 304 1 2583 181 121 42 chr9 30796402 30797320 -87065307 - L1MA7 LINE L1 -494 5797 4761 258 81 0 0 chr9 30797445 30797482 -87065145 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 348 188 0 0 chr9 30797481 30797550 -87065077 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 647 191 13 19 chr9 30797558 30797715 -87064912 - L1M3 LINE L1 -709 5474 5319 2841 0 0 3 chr9 30799512 30799820 -87062807 - AluYa5 SINE Alu -4 307 1 469 272 24 8 chr9 30800801 30800926 -87061701 - MIR3 SINE MIR -7 201 75 332 366 28 0 chr9 30801176 30801318 -87061309 - MER115 DNA AcHobo -413 280 135 424 299 22 87 chr9 30801500 30801811 -87060816 - HAL1 LINE L1 -1674 833 543 351 60 0 0 chr9 30801812 30801862 -87060765 + (T)n Simple_repeat Simple_repeat 1 50 0 270 237 71 160 chr9 30801950 30802015 -87060612 - HAL1 LINE L1 -2086 421 352 2217 111 0 0 chr9 30802015 30802313 -87060314 - AluY SINE Alu -13 298 1 270 237 71 160 chr9 30802313 30802585 -87060042 - HAL1 LINE L1 -2155 352 114 182 37 37 0 chr9 30803020 30803047 -87059580 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2006 172 25 0 chr9 30803247 30803602 -87059025 + THE1B LTR MaLR 1 364 0 9676 121 34 44 chr9 30803602 30805180 -87057447 + THE1B-int LTR MaLR 1 1563 -17 1751 147 37 0 chr9 30805180 30805453 -87057174 + THE1B LTR MaLR 82 364 0 811 228 129 0 chr9 30805492 30805685 -87056942 + MER20 DNA MER1_type 1 218 -1 5460 194 114 10 chr9 30805689 30807052 -87055575 - L1MCa LINE L1 -4805 1621 20 357 343 14 7 chr9 30807729 30807872 -87054755 - MER117 DNA MER1_type -42 155 12 932 242 84 49 chr9 30810301 30810516 -87052111 + L1M4 LINE L1 3879 4085 -2061 1436 89 80 25 chr9 30810516 30810753 -87051874 + L1PA8 LINE L1 5912 6161 -11 932 242 84 49 chr9 30810753 30810967 -87051660 + L1M4 LINE L1 4085 4323 -1823 740 243 46 23 chr9 30810972 30811235 -87051392 + L1M4 LINE L1 4670 4938 -1208 789 248 74 19 chr9 30812010 30812373 -87050254 + L1M4 LINE L1 4967 5349 -797 21 36 0 0 chr9 30812558 30812586 -87050041 + AT_rich Low_complexity Low_complexity 1 28 0 730 225 141 0 chr9 30812784 30812975 -87049652 + MSTD-int LTR MaLR 1504 1721 -14 433 215 32 0 chr9 30812986 30813079 -87049548 + MSTD LTR MaLR 1 96 -300 314 335 61 12 chr9 30813766 30813930 -87048697 + MER5B DNA MER1_type 2 173 -5 448 207 55 213 chr9 30813993 30814322 -87048305 + L1MD1 LINE L1 3 279 -6261 * 1762 262 46 17 chr9 30814310 30815032 -87047595 + L1MD1 LINE L1 2904 3646 -2894 3455 178 12 14 chr9 30815036 30815684 -87046943 - MER39B LTR ERV1 -6 647 1 1554 268 132 11 chr9 30815685 30816502 -87046125 + L1MD1 LINE L1 3645 4560 -1980 * 3105 231 106 24 chr9 30816488 30818103 -87044524 + L1MD1 LINE L1 4881 6626 -10 207 0 0 0 chr9 30818233 30818256 -87044371 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr9 30818664 30818685 -87043942 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr9 30819419 30819453 -87043174 + AT_rich Low_complexity Low_complexity 1 34 0 407 294 29 15 chr9 30820269 30820405 -87042222 - MIR SINE MIR -39 223 86 302 401 18 15 chr9 30821794 30822068 -87040559 - L1MC4 LINE L1 -612 7430 7156 389 222 61 10 chr9 30822335 30822434 -87040193 + MSTD LTR MaLR 1 104 -261 557 226 34 79 chr9 30822499 30822780 -87039847 + MSTD LTR MaLR 118 396 0 259 317 100 0 chr9 30822811 30822931 -87039696 - L1MC4 LINE L1 -1165 6877 6746 854 256 77 61 chr9 30823214 30823589 -87039038 + MER97c DNA MER1_type? 1 381 -709 503 62 0 0 chr9 30823603 30823667 -87038960 + THE1C LTR MaLR 4 67 -308 228 247 253 11 chr9 30823668 30823850 -87038777 + MER97c DNA MER1_type? 838 1063 -27 24 32 0 0 chr9 30824046 30824077 -87038550 + AT_rich Low_complexity Low_complexity 1 31 0 647 319 74 35 chr9 30824078 30824483 -87038144 + L1M3c LINE L1 1 421 -5720 362 177 13 0 chr9 30824698 30824777 -87037850 + L1MB1 LINE L1 4626 4705 -1441 2020 217 132 17 chr9 30824824 30825461 -87037166 - MER50 LTR ERV1 -17 717 8 3057 187 77 1 chr9 30825465 30826129 -87036498 + L1MB1 LINE L1 5459 6172 -17 288 0 0 0 chr9 30826267 30826299 -87036328 + (CA)n Simple_repeat Simple_repeat 2 33 0 538 226 155 2 chr9 30827893 30828101 -87034526 - L1 LINE L1 -1315 4831 4597 1609 66 39 18 chr9 30828207 30828463 -87034164 - HERVK14 LTR ERVK -577 5368 5038 362 41 0 0 chr9 30828463 30828512 -87034115 - HERV17 LTR ERV1 -8145 481 433 * 1089 55 28 7 chr9 30828511 30828656 -87033971 - HERV17 LTR ERV1 -3073 5553 5406 * 9885 65 28 11 chr9 30828636 30829939 -87032688 - HERV17 LTR ERV1 -4872 3754 2430 8432 75 16 7 chr9 30829931 30831064 -87031563 - HERV17 LTR ERV1 -6619 2007 865 * 5113 91 46 8 chr9 30831124 30831880 -87030747 - HERVK14 LTR ERVK -5160 785 1 1992 89 73 104 chr9 30831880 30832297 -87030330 - LTR14B LTR ERVK 0 608 1 889 143 81 81 chr9 30832299 30832557 -87030070 + L1MA7 LINE L1 6030 6287 -4 269 318 65 0 chr9 30833778 30833885 -87028742 + L2 LINE L2 3195 3308 -5 310 330 21 10 chr9 30834411 30834508 -87028119 - MIR SINE MIR -152 110 13 22 0 0 0 chr9 30834945 30834967 -87027660 + AT_rich Low_complexity Low_complexity 1 22 0 285 135 0 0 chr9 30836179 30836231 -87026396 + (GGAGA)n Simple_repeat Simple_repeat 2 53 0 2654 229 19 0 chr9 30836810 30837438 -87025189 + L1 LINE L1 3859 4498 -1648 4960 141 38 1 chr9 30837448 30838790 -87023837 + L1PA16 LINE L1 4797 6162 -4 2511 233 50 44 chr9 30840081 30840504 -87022123 - L1ME1 LINE L1 -3 6163 5731 2515 57 0 10 chr9 30840504 30840818 -87021809 - AluY SINE Alu 0 311 1 2511 233 50 44 chr9 30840818 30841219 -87021408 - L1ME1 LINE L1 -435 5731 5334 3282 249 68 31 chr9 30841245 30841901 -87020726 - L1M4 LINE L1 -512 5672 5042 240 35 0 0 chr9 30841901 30841930 -87020697 + (TG)n Simple_repeat Simple_repeat 1 29 0 3282 249 68 31 chr9 30841930 30842941 -87019686 - L1M4 LINE L1 -1142 5042 3943 274 176 0 39 chr9 30842948 30842999 -87019628 + AluSp SINE Alu 139 187 -116 428 169 22 22 chr9 30843000 30843089 -87019538 + FLAM_A SINE Alu 40 128 -14 1551 218 59 60 chr9 30843100 30843679 -87018948 - L1M4 LINE L1 -2203 3943 3366 582 281 42 0 chr9 30843763 30844001 -87018626 - L1M4 LINE L1 -2979 3167 2920 3749 120 9 3 chr9 30844011 30844577 -87018050 - L1PA12 LINE L1 0 6168 5600 2250 102 27 0 chr9 30844577 30844912 -87017715 + L1PA12 LINE L1 5260 5603 -565 552 285 6 0 chr9 30845011 30845183 -87017444 - L1M4 LINE L1 -3275 2871 2699 2069 133 3 0 chr9 30845763 30846063 -87016564 + AluSx SINE Alu 1 301 -11 249 298 40 66 chr9 30846064 30846215 -87016412 + MIR SINE MIR 47 193 -69 550 88 12 0 chr9 30846604 30846684 -87015943 - L1 LINE L1 -1561 4585 4505 1279 212 40 105 chr9 30846684 30846879 -87015748 + MLT1D LTR MaLR 102 255 -250 512 200 8 50 chr9 30846879 30846999 -87015628 + FLAM_A SINE Alu 1 115 -18 1279 212 40 105 chr9 30846999 30847233 -87015394 + MLT1D LTR MaLR 255 503 -2 28 48 0 0 chr9 30847848 30847890 -87014737 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 30848045 30848066 -87014561 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr9 30848553 30848600 -87014027 + AT_rich Low_complexity Low_complexity 1 47 0 25 31 0 0 chr9 30848685 30848717 -87013910 + AT_rich Low_complexity Low_complexity 1 32 0 22 80 0 0 chr9 30848973 30849023 -87013604 + AT_rich Low_complexity Low_complexity 1 50 0 268 288 15 0 chr9 30849170 30849236 -87013391 + MIR SINE MIR 1 67 -195 3711 210 58 11 chr9 30849478 30850486 -87012141 + L1MB2 LINE L1 5111 6165 -6 335 269 138 25 chr9 30850563 30850723 -87011904 + MIR SINE MIR 85 262 0 243 206 0 0 chr9 30852339 30852402 -87010225 + L1MC4 LINE L1 6641 6703 -1339 230 296 23 0 chr9 30852402 30852490 -87010137 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 1739 169 25 66 chr9 30852597 30853004 -87009623 + MLT1B LTR MaLR 1 390 0 1934 214 39 5 chr9 30853241 30853653 -87008974 + MSTB LTR MaLR 1 426 0 6779 244 23 67 chr9 30853653 30854703 -87007924 + MSTB-int LTR MaLR 1 947 -704 1818 44 4 0 chr9 30854703 30854929 -87007698 + L1PA5 LINE L1 5926 6154 0 6779 244 23 67 chr9 30854929 30855605 -87007022 + MSTB-int LTR MaLR 947 1651 0 2180 188 44 5 chr9 30855605 30856015 -87006612 + MSTB LTR MaLR 1 426 0 26 50 0 0 chr9 30856347 30856387 -87006240 + AT_rich Low_complexity Low_complexity 1 40 0 1737 338 56 30 chr9 30857578 30858456 -87004171 + L1M4b LINE L1 20 920 -5939 186 171 0 0 chr9 30858477 30858518 -87004109 + G-rich Low_complexity Low_complexity 1 41 0 369 352 62 6 chr9 30858632 30858794 -87003833 - L1M4b LINE L1 -6274 585 415 701 232 72 91 chr9 30858804 30859341 -87003286 + L1M4b LINE L1 899 1487 -5372 1836 294 53 21 chr9 30859392 30860282 -87002345 + L1M4b LINE L1 1489 2406 -4553 282 200 17 0 chr9 30860600 30860660 -87001967 + L1M4b LINE L1 4002 4062 -2895 339 44 0 0 chr9 30860705 30860750 -87001877 + (CA)n Simple_repeat Simple_repeat 2 46 0 1735 127 65 0 chr9 30861061 30861336 -87001291 - AluSq SINE Alu -20 293 1 39 60 0 0 chr9 30861337 30861404 -87001223 + AT_rich Low_complexity Low_complexity 1 67 0 3158 261 59 23 chr9 30861404 30862734 -86999893 + L1M4 LINE L1 2387 3764 -2382 1097 255 19 53 chr9 30862780 30863156 -86999471 + MLT2C1 LTR ERVL 31 393 -4 1350 278 79 37 chr9 30863313 30863881 -86998746 + L1MA8 LINE L1 466 1057 -6432 2644 256 59 21 chr9 30863894 30865354 -86997273 + L1MA8 LINE L1 1885 4385 -3180 * 4441 185 33 14 chr9 30865340 30866327 -86996300 + L1MA8 LINE L1 6702 7707 -3 2007 112 7 0 chr9 30866332 30866637 -86995990 + AluSg SINE Alu 1 307 0 266 368 11 6 chr9 30867576 30867750 -86994877 + L1MEc LINE L1 32 206 -6190 25 31 0 0 chr9 30870351 30870383 -86992244 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 30870658 30870679 -86991948 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 30870841 30870866 -86991761 + AT_rich Low_complexity Low_complexity 1 25 0 208 176 0 20 chr9 30871109 30871160 -86991467 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 2915 138 8 4 chr9 30871284 30871755 -86990872 + L1PA16 LINE L1 5689 6161 -5 26 30 0 0 chr9 30872147 30872180 -86990447 + AT_rich Low_complexity Low_complexity 1 33 0 322 285 32 32 chr9 30872435 30872558 -86990069 - L2 LINE L2 0 3313 3191 439 281 23 6 chr9 30875463 30875634 -86986993 + MER104 DNA Tc2 5 178 -2 419 190 58 50 chr9 30875811 30875932 -86986695 - L1MA9 LINE L1 -4 6308 6187 931 244 39 54 chr9 30878433 30878765 -86983862 - MER58B DNA MER1_type -9 332 6 212 100 25 0 chr9 30878947 30878987 -86983640 + (TA)n Simple_repeat Simple_repeat 2 42 0 3136 201 6 6 chr9 30879013 30879024 -86983603 + L1P LINE L1 4616 4626 -1525 4771 89 36 23 chr9 30879024 30879752 -86982875 - L1PB1 LINE L1 -2 6149 5413 3136 201 6 6 chr9 30879752 30880501 -86982126 + L1P LINE L1 4626 5375 -776 267 103 0 0 chr9 30880515 30880554 -86982073 + (TG)n Simple_repeat Simple_repeat 2 40 0 217 256 23 0 chr9 30880554 30880640 -86981987 + (TA)n Simple_repeat Simple_repeat 2 89 0 997 248 111 84 chr9 30880658 30881218 -86981409 + MLT1E1 LTR MaLR 76 650 -4 189 130 130 37 chr9 30883051 30883105 -86979522 - MER5A DNA MER1_type -111 78 20 38 89 0 0 chr9 30883613 30883714 -86978913 + AT_rich Low_complexity Low_complexity 1 101 0 21 71 0 0 chr9 30884916 30884958 -86977669 + AT_rich Low_complexity Low_complexity 1 42 0 356 271 0 74 chr9 30885539 30885661 -86976966 - MIR SINE MIR -121 141 29 2141 120 0 7 chr9 30885667 30885967 -86976660 - AluSx SINE Alu -12 300 3 4520 135 16 60 chr9 30886423 30887287 -86975340 - L1PA16 LINE L1 0 6166 5341 363 23 0 0 chr9 30887513 30887557 -86975070 + (CA)n Simple_repeat Simple_repeat 1 44 0 13707 46 6 3 chr9 30890841 30893330 -86969297 - L1PA5 LINE L1 -5 6149 3653 2016 142 51 20 chr9 30893823 30894176 -86968451 + THE1B LTR MaLR 1 364 0 3317 271 77 11 chr9 30895428 30896539 -86966088 + L1PA13 LINE L1 24 1250 -5537 4791 184 13 15 chr9 30896549 30897527 -86965100 + L1PA13 LINE L1 1396 2309 -4489 * 6469 61 16 2 chr9 30897511 30898537 -86964090 + L1P2 LINE L1 4524 5562 -592 410 318 123 68 chr9 30898597 30899169 -86963458 + L1M4 LINE L1 3743 4356 -1790 1012 273 35 20 chr9 30899476 30899824 -86962803 + LTR38 LTR ERV1 2 354 -202 2212 191 49 71 chr9 30899983 30900518 -86962109 + LTR38-int LTR ERV1 157 679 -1107 354 239 60 42 chr9 30901134 30901301 -86961326 + LTR38-int LTR ERV1 1439 1608 -5068 188 100 25 0 chr9 30902038 30902078 -86960549 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 1670 216 33 71 chr9 30902503 30902760 -86959867 + LTR38 LTR ERV1 1 266 -290 2255 91 3 3 chr9 30902760 30903056 -86959571 + AluSg SINE Alu 1 296 -14 1670 216 33 71 chr9 30903056 30903376 -86959251 + LTR38 LTR ERV1 266 556 0 2258 105 3 7 chr9 30903494 30903799 -86958828 + AluSc SINE Alu 1 304 -5 299 348 33 0 chr9 30904475 30904567 -86958060 + MER58 DNA MER1_type 2 96 -2324 433 186 0 12 chr9 30904581 30904667 -86957960 + MER58 DNA MER1_type 2336 2420 0 635 247 163 0 chr9 30905303 30905481 -86957146 - MER3 DNA MER1_type 0 209 3 252 333 38 50 chr9 30905612 30905771 -86956856 - L2 LINE L2 -960 2354 2198 239 357 31 0 chr9 30905853 30905951 -86956676 - LTR67 LTR ERVL -86 471 371 338 330 9 38 chr9 30906072 30906178 -86956449 - LTR67 LTR ERVL -367 190 88 4877 79 3 2 chr9 30906403 30907048 -86955579 - L1PA8 LINE L1 -7 6165 5520 1351 92 0 73 chr9 30907048 30907266 -86955361 + AluY SINE Alu 100 301 -10 1331 100 3 19 chr9 30907266 30907510 -86955117 - L1P3 LINE L1 -627 5527 5290 325 377 0 9 chr9 30907604 30907710 -86954917 - L2 LINE L2 -10 3262 3158 1014 206 174 82 chr9 30907960 30908276 -86954351 - MER2 DNA MER2_type 0 345 1 1244 157 0 5 chr9 30908493 30908691 -86953936 - LTR29 LTR ERV1 0 622 426 254 197 98 0 chr9 30908692 30908753 -86953874 + L1 LINE L1 4213 4279 -1867 446 169 0 0 chr9 30908754 30908831 -86953796 + MLT1B LTR MaLR 72 148 -242 1986 245 18 16 chr9 30908836 30909330 -86953297 - MER41E LTR ERV1 -5 507 13 926 216 12 66 chr9 30909700 30909941 -86952686 + MLT1B LTR MaLR 143 370 -20 639 201 6 41 chr9 30912060 30912229 -86950398 - L1PA16 LINE L1 0 6166 6004 611 152 0 0 chr9 30912336 30912428 -86950199 - AluJ/FLAM SINE Alu -220 92 1 3347 148 33 7 chr9 30912428 30913011 -86949616 - L1PA16 LINE L1 -230 5936 5339 962 299 80 35 chr9 30913011 30913374 -86949253 - HsTC2a DNA Tc2 -1306 594 196 189 74 0 0 chr9 30913374 30913401 -86949226 + (TG)n Simple_repeat Simple_repeat 2 28 0 962 299 80 35 chr9 30913401 30913603 -86949024 - HsTC2a DNA Tc2 -1704 196 4 25 0 0 0 chr9 30913672 30913697 -86948930 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr9 30914361 30914385 -86948242 + (TC)n Simple_repeat Simple_repeat 2 25 0 515 298 78 55 chr9 30914512 30914618 -86948009 - Charlie7 DNA MER1_type -2114 498 396 2159 122 6 3 chr9 30914618 30914930 -86947697 + AluSq SINE Alu 1 313 0 515 298 78 55 chr9 30914930 30915310 -86947317 - Charlie7 DNA MER1_type -2216 396 1 24 32 0 0 chr9 30916240 30916271 -86946356 + AT_rich Low_complexity Low_complexity 1 31 0 374 38 0 19 chr9 30916857 30916910 -86945717 + (TA)n Simple_repeat Simple_repeat 2 53 0 784 87 0 0 chr9 30917019 30917122 -86945505 - L1PA10 LINE L1 -16 6152 6050 3281 83 7 0 chr9 30917122 30917566 -86945061 + L1PA10 LINE L1 5567 6013 -155 275 256 56 22 chr9 30918133 30918223 -86944404 - ERVL LTR ERVL -956 4808 4716 2006 78 20 0 chr9 30918636 30918891 -86943736 - AluSc SINE Alu -27 282 23 945 251 85 15 chr9 30919174 30919587 -86943040 + MLT1D LTR MaLR 22 467 0 538 335 146 29 chr9 30919771 30920263 -86942364 - ERVL LTR ERVL -3343 2421 1872 356 387 86 0 chr9 30922542 30922728 -86939899 + MIR SINE MIR 4 205 -57 21 0 0 0 chr9 30922866 30922887 -86939740 + AT_rich Low_complexity Low_complexity 1 21 0 4468 79 12 3 chr9 30923210 30923815 -86938812 + L1PA11 LINE L1 5559 6168 -6 312 240 130 27 chr9 30924149 30924295 -86938332 - MLT1L LTR MaLR 0 615 455 602 268 19 131 chr9 30924646 30925067 -86937560 - MLT1A2 LTR MaLR 0 374 1 1451 220 13 19 chr9 30925250 30925563 -86937064 - AluJo SINE Alu -1 311 1 245 367 129 11 chr9 30925936 30926315 -86936312 - L2 LINE L2 -826 2488 2065 1351 211 43 19 chr9 30926858 30927180 -86935447 + MER2 DNA MER2_type 15 344 -1 3236 245 64 10 chr9 30929907 30930891 -86931736 + L1PB1 LINE L1 6 1042 -5821 10082 194 32 69 chr9 30930898 30933572 -86929055 + L1PB1 LINE L1 1093 3865 -3002 310 148 0 0 chr9 30933572 30933626 -86929001 + L1PB4 LINE L1 6099 6152 -4 10082 194 32 69 chr9 30933626 30936896 -86925731 + L1PB1 LINE L1 3865 6866 -1 260 306 61 96 chr9 30936988 30937249 -86925378 - L3 LINE CR1 -392 1185 934 545 162 26 8 chr9 30937707 30937824 -86924803 - L1MA7 LINE L1 -5 6286 6168 1060 209 82 30 chr9 30938174 30938442 -86924185 - AluJo SINE Alu -16 286 5 1889 128 0 11 chr9 30939477 30939751 -86922876 + AluSc SINE Alu 1 271 -38 200 185 19 0 chr9 30939761 30939815 -86922812 + GA-rich Low_complexity Low_complexity 4 58 0 1086 270 61 19 chr9 30940211 30940570 -86922057 + L1ME1 LINE L1 5786 6159 -7 295 391 8 0 chr9 30941037 30941165 -86921462 + L2 LINE L2 2919 3047 -225 988 249 0 0 chr9 30941607 30941808 -86920819 + MER58A DNA MER1_type 9 209 -15 229 279 96 67 chr9 30942062 30942166 -86920461 + MIR3 SINE MIR 49 155 -53 246 298 149 35 chr9 30942525 30942666 -86919961 - MIR3 SINE MIR -15 193 37 385 185 0 2 chr9 30942965 30943047 -86919580 + MIR SINE MIR 68 148 -60 463 307 111 23 chr9 30943111 30943583 -86919044 - MLT1F LTR MaLR -6 549 48 1891 114 114 35 chr9 30944647 30945016 -86917611 - LTR14B LTR ERVK 0 608 211 283 83 0 42 chr9 30945004 30945052 -86917575 - LTR14B LTR ERVK -562 46 1 * 724 35 52 95 chr9 30945055 30945171 -86917456 - HERVK14 LTR ERVK 0 5945 5835 291 196 0 33 chr9 30945171 30945247 -86917380 - MER41C LTR ERV1 -493 61 1 3188 75 26 15 chr9 30945247 30945892 -86916735 - HERVK14 LTR ERVK -186 5759 5038 311 62 0 0 chr9 30945893 30945941 -86916686 - HERV17 LTR ERV1 -8146 480 433 753 113 57 21 chr9 30945944 30946085 -86916542 - HERV17 LTR ERV1 -3076 5550 5405 * 9571 59 40 26 chr9 30946064 30947371 -86915256 - HERV17 LTR ERV1 -4872 3754 2430 8236 72 20 36 chr9 30947356 30948145 -86914482 - HERV17 LTR ERV1 -6612 2014 1247 * 355 40 0 20 chr9 30948145 30948195 -86914432 - L1PA6 LINE L1 -8 6146 6098 8236 72 20 36 chr9 30948195 30948573 -86914054 - HERV17 LTR ERV1 -7379 1247 865 5389 96 25 3 chr9 30948642 30949410 -86913217 - HERVK14 LTR ERVK -5160 785 1 1740 108 73 99 chr9 30949410 30949812 -86912815 - LTR14B LTR ERVK 0 608 7 1629 263 74 82 chr9 30950474 30951368 -86911259 - L1ME LINE L1 -5182 888 2 24 77 0 0 chr9 30951885 30951937 -86910690 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr9 30952536 30952558 -86910069 + AT_rich Low_complexity Low_complexity 1 22 0 1733 193 68 49 chr9 30952583 30952992 -86909635 + MSTB LTR MaLR 1 417 -9 1628 142 4 4 chr9 30953788 30954063 -86908564 - L1M1 LINE L1 -4176 3389 3115 * 10329 158 35 7 chr9 30954062 30957143 -86905484 + L1MA1 LINE L1 3134 6302 0 24 67 0 0 chr9 30958188 30958233 -86904394 + AT_rich Low_complexity Low_complexity 1 45 0 219 294 0 59 chr9 30958964 30959049 -86903578 + L2 LINE L2 3234 3313 0 299 286 41 10 chr9 30959138 30959236 -86903391 + L1ME2 LINE L1 4069 4169 -1977 971 186 0 54 chr9 30959237 30959441 -86903186 + AluJb SINE Alu 37 229 -83 1799 259 98 40 chr9 30959460 30960622 -86902005 + L1ME2 LINE L1 4920 6154 -10 715 215 35 56 chr9 30961440 30961728 -86900899 - Zaphod DNA AcHobo -1726 2305 2024 22 35 0 0 chr9 30961732 30961761 -86900866 + AT_rich Low_complexity Low_complexity 1 29 0 794 334 58 33 chr9 30962079 30962444 -86900183 - Zaphod DNA AcHobo -3657 374 1 2322 70 15 12 chr9 30964920 30965248 -86897379 - L1PA7 LINE L1 -7 6147 5819 478 251 33 107 chr9 30965375 30965741 -86896886 + L1ME3A LINE L1 5255 5593 -577 1163 272 60 99 chr9 30965777 30966497 -86896130 + MER21B LTR ERV1 22 713 -150 796 269 34 24 chr9 30966505 30966799 -86895828 + L1ME3A LINE L1 5605 5901 -269 292 321 52 52 chr9 30966933 30967126 -86895501 + L1ME3A LINE L1 5962 6154 -16 26 30 0 0 chr9 30967757 30967790 -86894837 + AT_rich Low_complexity Low_complexity 1 33 0 23 78 0 0 chr9 30967844 30967895 -86894732 + AT_rich Low_complexity Low_complexity 1 51 0 273 236 0 0 chr9 30968071 30968126 -86894501 - MER5A DNA MER1_type -83 106 52 695 261 37 21 chr9 30969403 30969591 -86893036 - MIR SINE MIR -2 260 70 25 51 0 0 chr9 30970511 30970550 -86892077 + AT_rich Low_complexity Low_complexity 1 39 0 2823 90 17 68 chr9 30972004 30972472 -86890155 - MLT2A1 LTR ERVL 0 444 1 28 48 0 0 chr9 30972636 30972678 -86889949 + AT_rich Low_complexity Low_complexity 1 42 0 201 214 18 18 chr9 30973511 30973567 -86889060 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 641 221 62 101 chr9 30973893 30974321 -86888306 - LTR1B LTR ERV1 -486 745 1 425 258 52 48 chr9 30974466 30974591 -86888036 + L1M4 LINE L1 4455 4578 -1568 1810 172 18 15 chr9 30974591 30974934 -86887693 + MER2 DNA MER2_type 1 344 0 425 258 52 48 chr9 30974934 30975060 -86887567 + L1M4 LINE L1 4578 4707 -1439 1534 228 55 3 chr9 30975767 30976113 -86886514 + MLT2D LTR ERVL 1 364 -50 411 68 0 0 chr9 30976113 30976172 -86886455 + (TC)n Simple_repeat Simple_repeat 2 60 0 5618 207 18 42 chr9 30977619 30978188 -86884439 + L1MA9 LINE L1 3999 4580 -1732 2283 99 0 13 chr9 30978188 30978490 -86884137 + AluY SINE Alu 2 299 -12 5618 207 18 42 chr9 30978490 30978819 -86883808 + L1MA9 LINE L1 4580 4915 -1397 1726 157 45 50 chr9 30978819 30979196 -86883431 + THE1C LTR MaLR 1 375 0 8262 147 91 9 chr9 30979196 30980655 -86881972 + THE1C-int LTR MaLR 1 1579 -1 1586 182 40 50 chr9 30980656 30981035 -86881592 + THE1C LTR MaLR 1 375 0 5618 207 18 42 chr9 30981035 30981943 -86880684 + L1MA9 LINE L1 4914 5742 -570 2197 104 3 0 chr9 30981943 30982232 -86880395 + AluSc SINE Alu 3 292 -17 5618 207 18 42 chr9 30982232 30982747 -86879880 + L1MA9 LINE L1 5742 6267 -45 399 276 20 116 chr9 30983397 30983642 -86878985 - MIR SINE MIR -14 248 22 26 50 0 0 chr9 30983932 30983972 -86878655 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr9 30983991 30984016 -86878611 + AT_rich Low_complexity Low_complexity 1 25 0 29 78 0 0 chr9 30984153 30984217 -86878410 + AT_rich Low_complexity Low_complexity 1 64 0 637 303 149 58 chr9 30984455 30985174 -86877453 + L1M4 LINE L1 98 881 -5661 8542 189 33 139 chr9 30985343 30987669 -86874958 + L1M2c LINE L1 3 1959 -4830 1533 164 66 41 chr9 30987669 30988035 -86874592 - THE1C LTR MaLR 0 375 1 8542 189 33 139 chr9 30988035 30988621 -86874006 + L1M2c LINE L1 1959 2605 -4184 5958 231 49 26 chr9 30988734 30990410 -86872217 + L1M2c LINE L1 2597 4333 -2455 264 59 0 0 chr9 30990410 30990444 -86872183 + (CA)n Simple_repeat Simple_repeat 2 35 0 5958 231 49 26 chr9 30990444 30990704 -86871923 + L1M2c LINE L1 4333 4586 -2202 1570 273 88 18 chr9 30990724 30991779 -86870848 + L1M4 LINE L1 946 2059 -4587 1434 179 9 63 chr9 30991804 30992123 -86870504 + AluJb SINE Alu 1 302 0 267 301 77 35 chr9 30992244 30992530 -86870097 + L1M4 LINE L1 2294 2591 -4055 2173 111 7 0 chr9 30992630 30992928 -86869699 - AluSg SINE Alu -8 302 3 23 0 0 0 chr9 30995631 30995654 -86866973 + AT_rich Low_complexity Low_complexity 1 23 0 911 172 52 11 chr9 30996011 30996185 -86866442 + MSTA LTR MaLR 1 181 -247 8204 189 30 1 chr9 30996185 30997695 -86864932 + MSTA-int LTR MaLR 99 1651 0 2015 172 52 7 chr9 30997697 30998103 -86864524 + MSTA LTR MaLR 5 428 0 1346 319 57 23 chr9 30998612 30999229 -86863398 + L2 LINE L2 2313 2950 -364 25 0 0 0 chr9 31001669 31001694 -86860933 + AT_rich Low_complexity Low_complexity 1 25 0 200 250 28 0 chr9 31002242 31002314 -86860313 + (TA)n Simple_repeat Simple_repeat 2 75 0 414 0 0 0 chr9 31003076 31003122 -86859505 + (TG)n Simple_repeat Simple_repeat 2 47 0 2638 20 0 0 chr9 31003611 31003915 -86858712 - L1PA5 LINE L1 -9 6145 5842 25 31 0 0 chr9 31003946 31003978 -86858649 + AT_rich Low_complexity Low_complexity 1 32 0 1274 231 16 19 chr9 31004154 31004465 -86858162 - AluJo SINE Alu -2 310 1 719 169 0 0 chr9 31004485 31004603 -86858024 - FLAM_C SINE Alu -15 118 1 1900 136 71 14 chr9 31004700 31005053 -86857574 + THE1C LTR MaLR 1 373 -2 13287 154 27 18 chr9 31005725 31008114 -86854513 - Tigger1 DNA MER2_type -4 2414 4 2120 106 3 33 chr9 31008768 31009071 -86853556 - AluSg SINE Alu -14 296 3 583 167 48 124 chr9 31009979 31010189 -86852438 - L1MC2 LINE L1 0 6344 6151 1671 236 98 83 chr9 31010191 31011076 -86851551 - L1M4 LINE L1 -5015 1840 948 1152 161 79 20 chr9 31011063 31011317 -86851310 - L1MA9 LINE L1 0 6312 6044 * 463 202 22 0 chr9 31011337 31011426 -86851201 - L1M4 LINE L1 -6765 94 4 228 185 19 0 chr9 31011802 31011856 -86850771 + T-rich Low_complexity Low_complexity 5 59 0 24 93 0 0 chr9 31011864 31011918 -86850709 + AT_rich Low_complexity Low_complexity 1 54 0 577 159 38 38 chr9 31012019 31012151 -86850476 - L1MA7 LINE L1 -25 6266 6135 1896 261 0 2 chr9 31012152 31012566 -86850061 + L1PA15 LINE L1 2 414 -6373 * 7475 227 18 16 chr9 31012561 31014429 -86848198 + L1PA15 LINE L1 3533 5404 -1393 4556 186 44 15 chr9 31014422 31014855 -86847772 + L1PA15 LINE L1 5674 6093 -723 * 2236 108 7 0 chr9 31014855 31015160 -86847467 + AluSc SINE Alu 3 309 0 4556 186 44 15 chr9 31015160 31015828 -86846799 + L1PA15 LINE L1 6093 6815 -1 3090 183 14 16 chr9 31015831 31016454 -86846173 - L1MA7 LINE L1 -148 6143 5522 504 190 0 43 chr9 31016800 31016870 -86845757 + MER20 DNA MER1_type 109 174 -45 261 0 0 0 chr9 31016870 31016899 -86845728 + (TA)n Simple_repeat Simple_repeat 1 29 0 504 190 0 43 chr9 31016899 31016944 -86845683 + MER20 DNA MER1_type 174 219 0 281 250 48 77 chr9 31017016 31017120 -86845507 - L2 LINE L2 -31 3241 3141 378 42 0 0 chr9 31019216 31019264 -86843363 + (TG)n Simple_repeat Simple_repeat 1 48 0 379 309 56 38 chr9 31019836 31020132 -86842495 - LTR16C LTR ERVL 0 491 149 26 50 0 0 chr9 31020536 31020576 -86842051 + AT_rich Low_complexity Low_complexity 1 40 0 231 342 29 98 chr9 31021212 31021487 -86841140 - L2 LINE L2 -81 3191 2936 45 45 0 0 chr9 31021741 31021807 -86840820 + AT_rich Low_complexity Low_complexity 1 66 0 1573 204 32 26 chr9 31022070 31022447 -86840180 - L1PA16 LINE L1 -16 6150 5772 198 165 35 26 chr9 31022550 31022665 -86839962 + (TTATA)n Simple_repeat Simple_repeat 2 117 0 204 329 26 13 chr9 31023185 31023261 -86839366 - L3 LINE CR1 -1 1576 1500 350 291 73 0 chr9 31023390 31023500 -86839127 + MIR SINE MIR 37 154 -108 1036 131 0 7 chr9 31223502 31223655 -86638972 - AluSq/x SINE Alu -160 152 1 1308 206 73 6 chr9 31223717 31224047 -86638580 - L1 LINE L1 -1161 4985 4634 4321 225 86 53 chr9 31224079 31224371 -86638256 - L1MC3 LINE L1 -911 6874 6593 2093 107 3 17 chr9 31224371 31224670 -86637957 - AluSp SINE Alu -7 306 12 4321 225 86 53 chr9 31224670 31225066 -86637561 - L1MC3 LINE L1 -1192 6593 6212 2157 121 0 7 chr9 31225066 31225364 -86637263 + AluSq SINE Alu 1 296 -17 4321 225 86 53 chr9 31225364 31226082 -86636545 - L1MC3 LINE L1 -1573 6212 5420 705 316 71 21 chr9 31226193 31226532 -86636095 + MER110 LTR ERV1 9 364 -127 1774 10 5 5 chr9 31227108 31227313 -86635314 - AluYa5 SINE Alu -4 307 103 4230 202 26 7 chr9 31227430 31228482 -86634145 + L1MB1 LINE L1 5093 6165 -3 2390 217 71 26 chr9 31228660 31229305 -86633322 + L1MC3 LINE L1 6856 7529 -256 2064 158 64 33 chr9 31230113 31230628 -86631999 - MLT2A2 LTR ERVL 0 554 1 318 178 0 41 chr9 31231112 31231185 -86631442 - pTR5 LTR ERV1 -27 687 78 225 112 92 122 chr9 31231192 31231290 -86631337 - MER61E LTR ERV1 -103 466 372 488 161 0 0 chr9 31232192 31232273 -86630354 - MLT2A2 LTR ERVL -10 443 363 2461 137 51 0 chr9 31232273 31232666 -86629961 + MER4E LTR ERV1 1 413 -366 187 298 0 0 chr9 31232873 31232920 -86629707 + L3 LINE CR1 1530 1576 -1 443 180 156 31 chr9 31233026 31233156 -86629471 + MIR SINE MIR 49 188 -63 229 238 16 16 chr9 31234159 31234222 -86628405 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 25 0 0 0 chr9 31234258 31234283 -86628344 + AT_rich Low_complexity Low_complexity 1 25 0 1633 156 9 61 chr9 31234475 31234801 -86627826 + AluJo SINE Alu 1 309 -3 1139 174 56 77 chr9 31234871 31235158 -86627469 + AluJo SINE Alu 12 292 -20 248 267 0 0 chr9 31235159 31235249 -86627378 + L1MC4 LINE L1 6614 6703 -1339 261 0 0 0 chr9 31235249 31235278 -86627349 + (TA)n Simple_repeat Simple_repeat 1 29 0 814 30 10 0 chr9 31235454 31235554 -86627073 - AluYa5 SINE Alu -182 129 29 326 258 30 53 chr9 31237076 31237208 -86625419 + L1MC4 LINE L1 6588 6716 -1326 399 190 17 35 chr9 31237244 31237322 -86625305 + (TA)n Simple_repeat Simple_repeat 2 80 -92 2257 192 9 9 chr9 31237322 31237754 -86624873 + Tigger2a DNA MER2_type 3 434 0 399 190 17 35 chr9 31237754 31237849 -86624778 + (TA)n Simple_repeat Simple_repeat 80 172 0 415 284 89 71 chr9 31240154 31240436 -86622191 + MLT1L LTR MaLR 144 430 -185 1889 101 4 40 chr9 31240764 31241041 -86621586 + AluSq SINE Alu 23 289 -24 28 0 0 0 chr9 31241041 31241069 -86621558 + AT_rich Low_complexity Low_complexity 1 28 0 191 286 0 0 chr9 31242523 31242572 -86620055 + MER5A DNA MER1_type 27 75 -114 1225 278 106 9 chr9 31243030 31243483 -86619144 + L1ME3 LINE L1 5596 6092 -70 21 82 0 0 chr9 31243836 31243885 -86618742 + AT_rich Low_complexity Low_complexity 1 49 0 928 267 11 40 chr9 31244297 31244574 -86618053 - MLT1A2 LTR MaLR 0 374 106 224 342 36 27 chr9 31245530 31245641 -86616986 + L2 LINE L2 2893 3004 -268 432 317 97 36 chr9 31245908 31246239 -86616388 - HAL1 LINE L1 -2146 361 11 956 273 60 25 chr9 31246606 31246925 -86615702 + MLT1E2 LTR MaLR 1 330 -294 2009 163 44 38 chr9 31246925 31247469 -86615158 - MLT2A2 LTR ERVL 0 554 1 13341 100 11 2 chr9 31247469 31249314 -86613313 - HERVL-A2 LTR ERVL 0 5654 3793 4021 91 2 18 chr9 31249305 31249864 -86612763 - HERVL-A2 LTR ERVL -2091 3563 3014 * 1245 186 39 56 chr9 31249868 31250174 -86612453 + MLT1E2 LTR MaLR 326 626 0 2312 67 0 10 chr9 31250605 31250905 -86611722 - AluY SINE Alu -14 297 1 2936 163 2 4 chr9 31251541 31252039 -86610588 + LOR1a LTR ERV1 1 497 0 223 306 90 0 chr9 31252505 31252616 -86610011 - MIR SINE MIR -65 197 77 272 316 34 8 chr9 31252998 31253115 -86609512 - MIR SINE MIR -25 237 118 21 36 0 0 chr9 31253146 31253174 -86609453 + AT_rich Low_complexity Low_complexity 1 28 0 1163 201 9 0 chr9 31254188 31254402 -86608225 - MLT1B LTR MaLR 0 390 175 195 241 46 81 chr9 31255479 31255566 -86607061 - MIR SINE MIR -73 189 106 205 333 83 8 chr9 31255962 31256082 -86606545 - MIR SINE MIR -62 200 72 26 0 0 0 chr9 31256312 31256338 -86606289 + AT_rich Low_complexity Low_complexity 1 26 0 233 135 0 0 chr9 31257381 31257418 -86605209 - L1MA4A LINE L1 -154 6149 6113 509 192 8 0 chr9 31257418 31257538 -86605089 + L1MA5 LINE L1 6180 6300 0 219 268 31 62 chr9 31257583 31257680 -86604947 - MIR SINE MIR -77 185 92 21 71 0 0 chr9 31258107 31258149 -86604478 + AT_rich Low_complexity Low_complexity 1 42 0 28 61 0 0 chr9 31258463 31258512 -86604115 + AT_rich Low_complexity Low_complexity 1 49 0 1059 176 5 5 chr9 31258743 31258942 -86603685 - L1 LINE L1 -1333 4813 4615 1359 240 23 31 chr9 31258944 31259423 -86603204 - L1 LINE L1 -1581 4565 4091 * 4019 197 21 50 chr9 31259421 31259812 -86602815 + L1MA10 LINE L1 5006 5407 -927 2123 104 16 0 chr9 31259812 31260120 -86602507 + AluSp SINE Alu 1 313 0 4019 197 21 50 chr9 31260120 31261051 -86601576 + L1MA10 LINE L1 5407 6286 -48 338 237 58 45 chr9 31261050 31261206 -86601421 - L1MC3 LINE L1 -35 7750 7593 * 274 244 122 12 chr9 31261221 31261303 -86601324 - L1MC/D LINE L1 -2255 5530 5440 1930 149 32 115 chr9 31261514 31261803 -86600824 + Tigger2a DNA MER2_type 3 240 -2468 1052 138 15 36 chr9 31261803 31261998 -86600629 + L1PA15 LINE L1 5972 6162 -3 1930 149 32 115 chr9 31261998 31262179 -86600448 + Tigger2a DNA MER2_type 240 434 0 246 241 24 0 chr9 31262787 31262870 -86599757 - HAL1 LINE L1 -951 1556 1472 446 300 67 48 chr9 31262943 31263273 -86599354 - HAL1b LINE L1 -997 351 16 22 88 0 0 chr9 31264406 31264463 -86598164 + AT_rich Low_complexity Low_complexity 1 57 0 1685 189 3 17 chr9 31264855 31265152 -86597475 - AluJb SINE Alu -14 298 6 25 75 0 0 chr9 31266482 31266535 -86596092 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr9 31266645 31266667 -86595960 + AT_rich Low_complexity Low_complexity 1 22 0 42200 38 21 2 chr9 31266675 31272704 -86589923 + L1PA3 LINE L1 1 6151 -4 26 0 0 0 chr9 31272707 31272733 -86589894 + AT_rich Low_complexity Low_complexity 1 26 0 1419 256 46 38 chr9 31272826 31273326 -86589301 + MLT1D LTR MaLR 2 505 0 243 280 21 11 chr9 31273515 31273608 -86589019 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 2099 120 3 0 chr9 31273811 31274111 -86588516 - AluSg SINE Alu -9 301 1 262 378 54 0 chr9 31274126 31274274 -86588353 - MIR SINE MIR -44 218 63 1672 173 41 54 chr9 31274659 31275028 -86587599 + THE1B LTR MaLR 1 364 0 297 101 14 0 chr9 31275488 31275535 -86587092 - L1M2 LINE L1 -483 5673 5633 1594 159 3 39 chr9 31275536 31275844 -86586783 + L1PB4 LINE L1 5860 6156 0 26 64 0 0 chr9 31276235 31276282 -86586345 + AT_rich Low_complexity Low_complexity 1 47 0 53 40 0 0 chr9 31276391 31276465 -86586162 + AT_rich Low_complexity Low_complexity 1 74 0 2196 102 36 117 chr9 31276465 31277109 -86585518 - MER4B LTR ERV1 -37 742 3 2005 133 0 32 chr9 31277123 31277432 -86585195 + AluSx SINE Alu 1 299 -13 1385 187 47 0 chr9 31277451 31277708 -86584919 + AluSx SINE Alu 1 269 -43 31 68 0 0 chr9 31277708 31277767 -86584860 + AT_rich Low_complexity Low_complexity 1 59 0 304 287 51 56 chr9 31278266 31278461 -86584166 - L2 LINE L2 -106 3207 3014 * 1099 305 89 71 chr9 31278449 31279210 -86583417 - L2 LINE L2 -576 2738 1964 21 0 0 0 chr9 31279401 31279422 -86583205 + AT_rich Low_complexity Low_complexity 1 21 0 501 271 33 22 chr9 31279516 31279697 -86582930 + L2 LINE L2 2156 2338 -976 240 35 0 0 chr9 31281359 31281388 -86581239 + (CA)n Simple_repeat Simple_repeat 1 29 0 2577 151 17 2 chr9 31281772 31282189 -86580438 - MSTA LTR MaLR -5 423 1 827 172 19 6 chr9 31284597 31284754 -86577873 + L1MC2 LINE L1 6175 6333 -11 303 322 91 25 chr9 31286143 31286264 -86576363 - L2 LINE L2 -5 3267 3139 190 143 0 0 chr9 31286658 31286686 -86575941 - L2 LINE L2 -3 3269 3242 1416 226 32 87 chr9 31286799 31287268 -86575359 - LTR40b LTR ERVL -19 443 1 2106 116 0 6 chr9 31288098 31288416 -86574211 - L1PB1 LINE L1 -1 6150 5835 1606 303 115 17 chr9 31288449 31289169 -86573458 - L2 LINE L2 -737 2577 1787 325 292 33 42 chr9 31289248 31289368 -86573259 - L2 LINE L2 -3192 122 4 23 86 0 0 chr9 31291866 31291924 -86570703 + AT_rich Low_complexity Low_complexity 1 58 0 253 263 0 0 chr9 31292252 31292309 -86570318 + (TG)n Simple_repeat Simple_repeat 2 58 0 21 36 0 0 chr9 31293021 31293049 -86569578 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 31293290 31293313 -86569314 + AT_rich Low_complexity Low_complexity 1 23 0 2733 133 24 18 chr9 31294609 31295062 -86567565 + L1PA14 LINE L1 5703 6158 -3 22 35 0 0 chr9 31295062 31295091 -86567536 + AT_rich Low_complexity Low_complexity 1 29 0 430 282 181 0 chr9 31296643 31296792 -86565835 + MER91A DNA MER1_type 1 176 -20 348 306 172 0 chr9 31296788 31296922 -86565705 + MIR SINE MIR 81 237 -25 * 337 305 96 27 chr9 31297274 31297445 -86565182 + MIR SINE MIR 15 192 -67 307 208 142 19 chr9 31297958 31298064 -86564563 - MER53 DNA DNA -70 119 1 3591 118 15 11 chr9 31299720 31300245 -86562382 + MER1A DNA MER1_type 1 527 0 1594 229 63 38 chr9 31300286 31300762 -86561865 + MLT1D LTR MaLR 1 488 -17 423 269 81 40 chr9 31300859 31301008 -86561619 - MIR SINE MIR -95 167 13 320 0 25 0 chr9 31301301 31301341 -86561286 + (CA)n Simple_repeat Simple_repeat 1 41 0 998 236 19 75 chr9 31302020 31302308 -86560319 + L1 LINE L1 4908 5174 -972 1804 154 116 43 chr9 31302308 31302704 -86559923 + MSTA LTR MaLR 1 425 -3 998 236 19 75 chr9 31302704 31302775 -86559852 + L1 LINE L1 5174 5247 -899 * 4100 190 43 19 chr9 31302774 31302972 -86559655 - L1 LINE L1 -1273 4873 4681 243 61 0 0 chr9 31302972 31303005 -86559622 + (TG)n Simple_repeat Simple_repeat 2 34 0 4100 190 43 19 chr9 31303005 31303771 -86558856 - L1 LINE L1 -1465 4681 3885 257 200 0 0 chr9 31303769 31303819 -86558808 - L1ME3 LINE L1 -8 6154 6105 * 493 229 52 57 chr9 31303936 31304128 -86558499 - L1ME3 LINE L1 -233 5931 5741 423 235 162 0 chr9 31304275 31304411 -86558216 - L1ME3 LINE L1 -398 5764 5607 496 262 48 19 chr9 31304737 31304953 -86557674 + MER106B DNA MER1_type 3 1042 -17 181 0 0 65 chr9 31305520 31305551 -86557076 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 681 233 63 34 chr9 31306653 31306859 -86555768 + L2 LINE L2 3102 3313 0 1750 187 36 30 chr9 31307374 31307737 -86554890 + MLT1A1 LTR MaLR 1 365 0 1738 268 52 23 chr9 31307994 31308513 -86554114 - MLT1F LTR MaLR -2 540 7 442 316 101 60 chr9 31308839 31309342 -86553285 + L2 LINE L2 1264 1787 -1527 4881 120 33 3 chr9 31309343 31310107 -86552520 + L1P3 LINE L1 6 792 -5669 194 328 17 17 chr9 31310659 31310717 -86551910 + L2 LINE L2 3154 3211 -61 1732 164 3 67 chr9 31310878 31311238 -86551389 - MER1B DNA MER1_type 0 337 1 424 131 37 9 chr9 31311371 31311478 -86551149 + (TA)n Simple_repeat Simple_repeat 1 110 0 308 248 19 57 chr9 31311486 31311591 -86551036 - L1MC4 LINE L1 -1339 6703 6603 28 0 0 0 chr9 31311707 31311735 -86550892 + AT_rich Low_complexity Low_complexity 1 28 0 10620 196 23 12 chr9 31312269 31315219 -86547408 + L1P5 LINE L1 2769 5753 -398 680 271 134 46 chr9 31315219 31315548 -86547079 + MLT2B1 LTR ERVL 116 483 -37 240 59 0 0 chr9 31315548 31315582 -86547045 + (TG)n Simple_repeat Simple_repeat 2 35 0 680 271 134 46 chr9 31315582 31315624 -86547003 + MLT2B1 LTR ERVL 483 520 0 2200 119 19 24 chr9 31316073 31316450 -86546177 + THE1C LTR MaLR 1 375 0 674 232 109 85 chr9 31316735 31317106 -86545521 + MER41B LTR ERV1 97 365 -113 498 279 11 37 chr9 31317098 31317288 -86545339 + MER66B LTR ERV1 293 477 -9 * 1978 160 13 16 chr9 31317378 31317754 -86544873 - THE1C LTR MaLR 0 375 1 498 269 82 22 chr9 31318075 31318257 -86544370 - MIR SINE MIR -68 194 2 26 93 0 0 chr9 31318760 31318835 -86543792 + AT_rich Low_complexity Low_complexity 1 75 0 1188 201 93 0 chr9 31319357 31319616 -86543011 + AluJb SINE Alu 2 284 -18 38 0 0 0 chr9 31319652 31319690 -86542937 + AT_rich Low_complexity Low_complexity 1 38 0 291 333 27 9 chr9 31320278 31320389 -86542238 - L2 LINE L2 -7 3306 3194 209 184 0 0 chr9 31320690 31320728 -86541899 - L2 LINE L2 -8 3305 3268 33 25 0 0 chr9 31321010 31321050 -86541577 + AT_rich Low_complexity Low_complexity 1 40 0 255 346 24 47 chr9 31321170 31321297 -86541330 - MER5A DNA MER1_type -25 164 41 3522 136 2 4 chr9 31321546 31322074 -86540553 + MER1A DNA MER1_type 1 527 0 538 305 40 35 chr9 31322360 31322560 -86540067 + MER63A DNA MER1_type 8 208 -2 279 376 47 7 chr9 31324434 31324583 -86538044 - MIR SINE MIR -87 175 21 12454 179 57 16 chr9 31326206 31326563 -86536064 - L1M4 LINE L1 -1108 6457 6116 1865 159 0 3 chr9 31326563 31326881 -86535746 - AluSx SINE Alu 0 312 3 12454 179 57 16 chr9 31326881 31329741 -86532886 - L1M4 LINE L1 -1449 6116 3102 657 251 63 31 chr9 31329743 31330030 -86532597 + L1M4 LINE L1 2429 2724 -3422 308 271 8 0 chr9 31330052 31330170 -86532457 + L1M4 LINE L1 2782 2900 -3246 357 198 188 10 chr9 31330320 31330416 -86532211 - LTR25 LTR ERV1 -260 534 422 483 190 58 0 chr9 31330576 31330683 -86531944 - MER61E LTR ERV1 -473 96 1 1353 255 31 12 chr9 31330685 31331104 -86531523 - L1M4 LINE L1 -3467 2679 2253 27 0 0 0 chr9 31331907 31331934 -86530693 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr9 31332599 31332628 -86529999 + AT_rich Low_complexity Low_complexity 1 29 0 315 0 0 0 chr9 31332723 31332758 -86529869 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1535 197 118 14 chr9 31333126 31333543 -86529084 + MLT1C LTR MaLR 6 465 -2 32 26 0 0 chr9 31334740 31334779 -86527848 + AT_rich Low_complexity Low_complexity 1 39 0 777 259 114 102 chr9 31334842 31335341 -86527286 - L1ME3A LINE L1 -27 6143 5639 380 253 79 33 chr9 31335332 31335573 -86527054 - L1MEc LINE L1 -3784 3157 2906 * 444 364 117 0 chr9 31335886 31336238 -86526389 - L1MEc LINE L1 -4576 2546 2154 4166 151 39 18 chr9 31336565 31337334 -86525293 - LTR1 LTR ERV1 0 785 1 324 270 31 86 chr9 31338333 31338418 -86524209 - MLT1J1 LTR MaLR -292 154 81 2030 113 0 86 chr9 31338418 31338754 -86523873 + AluSp SINE Alu 1 307 -6 324 270 31 86 chr9 31338754 31338831 -86523796 - MLT1J1 LTR MaLR -365 81 1 42 20 0 0 chr9 31339077 31339126 -86523501 + AT_rich Low_complexity Low_complexity 1 49 0 26 0 0 0 chr9 31339579 31339605 -86523022 + AT_rich Low_complexity Low_complexity 1 26 0 259 270 95 47 chr9 31340473 31340621 -86522006 - L1MEc LINE L1 -6250 173 19 5035 167 34 19 chr9 31340919 31341394 -86521233 - L1MA8 LINE L1 0 6291 5824 330 26 0 0 chr9 31341394 31341433 -86521194 + (TG)n Simple_repeat Simple_repeat 2 40 0 5035 167 34 19 chr9 31341433 31342235 -86520392 - L1MA8 LINE L1 -467 5824 4992 3654 149 48 4 chr9 31342228 31342239 -86520388 + L1 LINE L1 4057 4066 -2080 * 6649 73 8 22 chr9 31342239 31343634 -86518993 - L1PA6 LINE L1 0 6154 4773 3654 149 48 4 chr9 31343634 31344314 -86518313 + L1PA6 LINE L1 4066 4778 -1368 1535 230 22 10 chr9 31344496 31344961 -86517666 - MER101B LTR ERV1 -57 417 3 321 360 40 25 chr9 31345261 31345536 -86517091 + MLT1H LTR MaLR 1 279 -270 189 74 0 0 chr9 31346850 31346877 -86515750 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1983 42 0 0 chr9 31347612 31347852 -86514775 + L1PA3 LINE L1 5913 6152 -3 42 36 0 0 chr9 31348314 31348370 -86514257 + AT_rich Low_complexity Low_complexity 1 56 0 32 75 0 0 chr9 31349267 31349334 -86513293 + AT_rich Low_complexity Low_complexity 1 67 0 212 364 58 8 chr9 31350007 31350128 -86512499 + MIR SINE MIR 13 139 -123 1721 167 16 16 chr9 31351218 31351529 -86511098 + AluJb SINE Alu 1 311 -1 303 265 60 43 chr9 31351835 31351952 -86510675 - L2 LINE L2 0 3272 3154 283 366 142 41 chr9 31352167 31353501 -86509126 - L2 LINE L2 -462 2852 1384 201 350 39 10 chr9 31353669 31353772 -86508855 + MIR SINE MIR 41 146 -62 462 218 10 0 chr9 31354909 31355010 -86507617 - U13 snRNA snRNA -2 102 1 1387 244 16 16 chr9 31355820 31356184 -86506443 + MLT1A1 LTR MaLR 2 365 0 22 35 0 0 chr9 31357053 31357082 -86505545 + AT_rich Low_complexity Low_complexity 1 29 0 1761 223 12 0 chr9 31357659 31358005 -86504622 - MLT1-int LTR MaLR -513 858 509 296 179 30 0 chr9 31358006 31358073 -86504554 + CT-rich Low_complexity Low_complexity 4 72 0 1841 235 38 30 chr9 31358073 31358338 -86504289 - MLT1-int LTR MaLR -838 533 272 2403 65 7 0 chr9 31358338 31358646 -86503981 - AluY SINE Alu -1 310 1 1841 235 38 30 chr9 31358646 31358908 -86503719 - MLT1-int LTR MaLR -1099 272 2 1620 201 41 46 chr9 31358910 31359059 -86503568 - MLT2C1 LTR ERVL -1 396 248 4178 130 42 3 chr9 31359059 31359745 -86502882 - L1PA15 LINE L1 -2 6163 5451 1620 201 41 46 chr9 31359745 31359983 -86502644 - MLT2C1 LTR ERVL -149 248 11 2401 264 22 39 chr9 31359993 31360811 -86501816 - LOR1-int LTR ERV1 -803 4133 3330 1953 154 0 0 chr9 31361009 31361307 -86501320 - AluSx SINE Alu -14 298 1 282 136 29 146 chr9 31361705 31361808 -86500819 - LOR1-int LTR ERV1 -1819 3117 3027 4695 53 2 2 chr9 31362190 31362807 -86499820 + L1P LINE L1 4777 5393 -753 7213 50 1 3 chr9 31362922 31364218 -86498409 + L1PA6 LINE L1 4860 6153 -1 1894 157 0 19 chr9 31364391 31364703 -86497924 - AluSx SINE Alu -6 306 1 264 212 53 82 chr9 31364751 31364921 -86497706 - LOR1-int LTR ERV1 -3782 4338 4174 2227 165 25 16 chr9 31365199 31365647 -86496980 + L1MB3 LINE L1 5730 6181 -2 47 0 0 0 chr9 31365657 31365704 -86496923 + AT_rich Low_complexity Low_complexity 1 47 0 1211 224 74 20 chr9 31365743 31366095 -86496532 - LTR25 LTR ERV1 -10 784 414 290 188 141 0 chr9 31366065 31366129 -86496498 - MER51A LTR ERV1 -354 280 208 * 518 131 12 0 chr9 31366300 31366384 -86496243 - MER61E LTR ERV1 -484 85 1 234 0 0 0 chr9 31367200 31367226 -86495401 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2446 130 57 4 chr9 31367226 31367631 -86494996 - L1PA10 LINE L1 -20 6148 5725 853 238 84 0 chr9 31367869 31368096 -86494531 - ORSL DNA AcHobo 0 275 30 332 267 113 35 chr9 31368214 31368619 -86494008 + MLT1J2 LTR MaLR 15 444 -2 396 0 0 0 chr9 31368841 31368885 -86493742 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 65 0 0 chr9 31369073 31369119 -86493508 + AT_rich Low_complexity Low_complexity 1 46 0 33 80 0 0 chr9 31371477 31371552 -86491075 + AT_rich Low_complexity Low_complexity 1 75 0 1209 172 62 41 chr9 31371762 31372052 -86490575 - L1MB5 LINE L1 -8 6166 5871 21 36 0 0 chr9 31372800 31372828 -86489799 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 31372933 31372978 -86489649 + AT_rich Low_complexity Low_complexity 1 45 0 270 311 90 54 chr9 31374022 31374189 -86488438 + MLT1J LTR MaLR 106 278 -233 250 270 40 0 chr9 31374563 31374637 -86487990 + MIR SINE MIR 78 154 -108 248 146 24 0 chr9 31375040 31375079 -86487548 - MLT1B LTR MaLR -2 388 349 1123 177 26 5 chr9 31375079 31375300 -86487327 + LTR18B LTR ERVL 1 259 -98 876 166 67 36 chr9 31375377 31375600 -86487027 + LTR18B LTR ERVL 385 614 0 1405 218 3 31 chr9 31375607 31375928 -86486699 + HERVL18 LTR ERVL 2 313 -5734 1404 218 7 0 chr9 31375902 31376173 -86486454 + HERVL18 LTR ERVL 492 764 -5283 * 512 158 0 11 chr9 31376182 31376277 -86486350 + HERVL18 LTR ERVL 874 967 -5080 * 1135 143 14 13 chr9 31376269 31376616 -86486011 + HERVL18 LTR ERVL 1399 1810 -4237 1117 113 118 2 chr9 31376615 31376848 -86485779 + HERVL18 LTR ERVL 2119 2436 -3611 * 2946 163 11 14 chr9 31376847 31377660 -86484967 + HERVL18 LTR ERVL 2725 3573 -2474 527 135 79 11 chr9 31377668 31377757 -86484870 + HERVL18 LTR ERVL 4394 4488 -1559 297 220 0 0 chr9 31377757 31377807 -86484820 + HERVL18 LTR ERVL 5209 5258 -789 1276 208 267 16 chr9 31378056 31378547 -86484080 + LTR18B LTR ERVL 1 614 0 1001 242 30 83 chr9 31378547 31378916 -86483711 - MLT1B LTR MaLR -36 354 6 2035 250 73 31 chr9 31378927 31379516 -86483111 + MLT1E1 LTR MaLR 41 654 0 1427 203 16 23 chr9 31380772 31381077 -86481550 - AluJb SINE Alu -7 305 3 1372 23 23 0 chr9 31382523 31382679 -86479948 + (TTTC)n Simple_repeat Simple_repeat 1 337 0 1372 23 23 0 chr9 31382679 31382853 -86479774 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1639 186 33 21 chr9 31384301 31384358 -86478269 - MER7A DNA MER2_type -2692 346 291 2206 129 14 32 chr9 31384358 31384729 -86477898 - THE1B LTR MaLR 0 364 1 1639 186 33 21 chr9 31384729 31385005 -86477622 - MER7A DNA MER2_type -2747 291 11 269 250 0 0 chr9 31385004 31385056 -86477571 - MER7A DNA MER2_type -295 53 2 * 23 0 0 0 chr9 31385070 31385093 -86477534 + AT_rich Low_complexity Low_complexity 1 23 0 240 256 120 26 chr9 31385762 31385879 -86476748 + LTR16C LTR ERVL 279 406 -85 309 267 44 100 chr9 31386277 31386457 -86476170 - L1MEd LINE L1 -5031 1088 919 1434 199 32 71 chr9 31386689 31387152 -86475475 - LTR56 LTR ERV1 0 445 1 23 0 0 0 chr9 31387774 31387797 -86474830 + AT_rich Low_complexity Low_complexity 1 23 0 651 252 93 11 chr9 31388764 31389042 -86473585 - L1ME2 LINE L1 -10 6154 5854 282 343 33 50 chr9 31389156 31389337 -86473290 + L3 LINE CR1 1252 1429 -148 554 198 59 48 chr9 31389683 31389718 -86472909 + MER53 DNA DNA 1 34 -155 1457 181 29 25 chr9 31389718 31389999 -86472628 + AluJo SINE Alu 1 282 -30 603 40 0 0 chr9 31390000 31390074 -86472553 + (GGAA)n Simple_repeat Simple_repeat 4 77 0 554 198 59 48 chr9 31390074 31390223 -86472404 + MER53 DNA DNA 33 189 0 456 324 23 95 chr9 31391186 31391535 -86471092 - L2 LINE L2 -15 3298 2975 2494 37 0 0 chr9 31391625 31391925 -86470702 + L1PA5 LINE L1 5848 6147 -7 1162 268 65 3 chr9 31391973 31392309 -86470318 - MER110 LTR ERV1 -116 375 19 369 0 0 0 chr9 31392319 31392360 -86470267 + (TTA)n Simple_repeat Simple_repeat 2 42 0 641 353 32 0 chr9 31392369 31392621 -86470006 - L2 LINE L2 -340 2974 2715 233 236 18 0 chr9 31393888 31393943 -86468684 + (TATG)n Simple_repeat Simple_repeat 1 56 0 370 274 68 76 chr9 31393958 31394499 -86468128 - L1M4 LINE L1 -2172 3974 3438 22 0 0 0 chr9 31394615 31394637 -86467990 + AT_rich Low_complexity Low_complexity 1 22 0 2894 71 13 2 chr9 31394704 31395100 -86467527 - L1PA7 LINE L1 0 6154 5755 2124 117 6 26 chr9 31395100 31395443 -86467184 + L1P LINE L1 2106 2441 -3705 623 124 62 149 chr9 31395521 31395715 -86466912 + MER53 DNA DNA 2 178 -11 420 289 176 26 chr9 31395752 31396139 -86466488 - L1M4 LINE L1 -2961 3185 2741 928 94 0 0 chr9 31396179 31396296 -86466331 - AluY SINE Alu -184 127 11 369 312 73 30 chr9 31396314 31396644 -86465983 - L1M4 LINE L1 -3537 2609 2266 438 236 46 41 chr9 31396856 31397051 -86465576 - L1MC4 LINE L1 -146 7896 7701 1086 242 181 50 chr9 31397073 31397759 -86464868 + L1MC4a LINE L1 5895 6648 -1137 207 297 0 14 chr9 31397770 31397844 -86464783 + (TA)n Simple_repeat Simple_repeat 2 74 0 521 287 38 38 chr9 31398555 31398764 -86463863 - MER63A DNA MER1_type 0 210 2 1751 315 71 48 chr9 31399226 31401204 -86461423 + L1MEc LINE L1 165 2187 -4209 321 289 72 36 chr9 31401186 31401549 -86461078 + L1MEc LINE L1 2659 3034 -3181 * 2101 125 0 0 chr9 31401551 31401848 -86460779 + AluSx SINE Alu 1 297 -15 597 290 41 19 chr9 31401874 31402288 -86460339 + L1MEc LINE L1 3155 3577 -2638 209 366 71 21 chr9 31402403 31402479 -86460148 + L2 LINE L2 2049 2120 -1194 2436 55 3 6 chr9 31402479 31402791 -86459836 - AluY SINE Alu 0 311 1 209 366 71 21 chr9 31402791 31403039 -86459588 + L2 LINE L2 2120 2389 -925 358 233 26 43 chr9 31403611 31403727 -86458900 - L1M4 LINE L1 -2095 4051 3938 2254 127 94 10 chr9 31403764 31404157 -86458470 + MSTA LTR MaLR 3 428 0 396 0 0 0 chr9 31404157 31404201 -86458426 + (TG)n Simple_repeat Simple_repeat 2 45 0 277 305 0 0 chr9 31404201 31404283 -86458344 - L1M4 LINE L1 -2472 3674 3593 183 338 235 15 chr9 31404372 31404840 -86457787 - L2 LINE L2 -925 2389 1819 2198 92 3 26 chr9 31405050 31405356 -86457271 + AluSc SINE Alu 3 301 -8 229 265 96 0 chr9 31405534 31405617 -86457010 - MLT1I LTR MaLR -8 401 311 339 341 103 9 chr9 31405673 31405887 -86456740 - MLT1J2 LTR MaLR -201 249 16 802 315 108 40 chr9 31406001 31406725 -86455902 + L2 LINE L2 2532 3311 -2 31 0 0 0 chr9 31406750 31406781 -86455846 + AT_rich Low_complexity Low_complexity 1 31 0 1775 193 33 28 chr9 31407008 31407402 -86455225 - MSTD LTR MaLR 0 396 1 453 222 9 9 chr9 31407434 31407542 -86455085 - L1ME LINE L1 -478 5643 5536 358 270 62 61 chr9 31407932 31408178 -86454449 + MIR SINE MIR 15 256 -6 847 138 19 19 chr9 31410155 31410315 -86452312 - L1MA9 LINE L1 0 6312 6153 1706 158 142 16 chr9 31411043 31411423 -86451204 - MSTA LTR MaLR 0 428 1 242 312 21 59 chr9 31412551 31412737 -86449890 - HAL1b LINE L1 -697 651 473 210 269 0 64 chr9 31413119 31413260 -86449367 + T-rich Low_complexity Low_complexity 3 134 0 397 209 0 0 chr9 31416595 31416686 -86445941 - L1MB8 LINE L1 0 6178 6088 383 238 125 42 chr9 31416720 31416888 -86445739 + MLT1D LTR MaLR 324 505 0 229 324 112 42 chr9 31417031 31417290 -86445337 - L2 LINE L2 -488 2826 2550 2279 75 0 50 chr9 31418216 31418537 -86444090 - AluY SINE Alu -6 305 1 1863 168 50 19 chr9 31418597 31418961 -86443666 - THE1C LTR MaLR 0 375 1 242 0 0 0 chr9 31420566 31420595 -86442032 + HSMAR1 DNA Mariner 1258 1286 -1 547 260 58 6 chr9 31420595 31420768 -86441859 - L2 LINE L2 -32 3281 3100 231 179 0 0 chr9 31420825 31420864 -86441763 + MLT1E3 LTR MaLR 46 84 -540 427 273 159 0 chr9 31420923 31421099 -86441528 + HsTC2 DNA Tc2 341 544 -1354 22 0 0 0 chr9 31421676 31421698 -86440929 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 31424483 31424512 -86438115 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 31424608 31424632 -86437995 + AT_rich Low_complexity Low_complexity 1 24 0 25 75 0 0 chr9 31426018 31426071 -86436556 + AT_rich Low_complexity Low_complexity 1 53 0 1060 259 39 86 chr9 31426564 31426688 -86435939 + MLT1B LTR MaLR 4 132 -258 1653 186 148 13 chr9 31426688 31427065 -86435562 + MSTA LTR MaLR 1 428 0 1060 259 39 86 chr9 31427065 31427346 -86435281 + MLT1B LTR MaLR 132 390 0 227 237 0 34 chr9 31427625 31427684 -86434943 + (CATA)n Simple_repeat Simple_repeat 2 58 0 299 333 44 7 chr9 31428635 31428770 -86433857 - MIR SINE MIR 0 262 123 303 358 42 0 chr9 31429200 31429320 -86433307 + L2 LINE L2 2697 2821 -493 1813 228 72 23 chr9 31429473 31429946 -86432681 - MLT1D LTR MaLR 0 505 10 267 280 40 0 chr9 31430156 31430231 -86432396 + L2 LINE L2 3236 3313 0 3962 229 33 26 chr9 31430488 31432327 -86430300 + L1MB8 LINE L1 4334 6177 -1 823 304 27 69 chr9 31432863 31433313 -86429314 - LTR16A LTR ERVL -5 445 15 342 295 81 7 chr9 31433447 31433641 -86428986 - L1M4c LINE L1 -4836 1548 1345 246 105 0 0 chr9 31434218 31434256 -86428371 + (T)n Simple_repeat Simple_repeat 1 38 0 255 309 59 29 chr9 31434970 31435106 -86427521 + LTR67 LTR ERVL 334 473 -84 261 260 0 0 chr9 31435491 31435595 -86427032 + (TA)n Simple_repeat Simple_repeat 1 104 0 225 0 0 0 chr9 31435692 31435717 -86426910 + (A)n Simple_repeat Simple_repeat 1 25 0 12554 186 28 7 chr9 31435934 31439659 -86422968 - L1MA3 LINE L1 0 7724 3931 234 288 55 0 chr9 31439727 31439800 -86422827 + L2 LINE L2 3237 3313 0 6548 206 180 57 chr9 31440003 31441874 -86420753 - L1MA3 LINE L1 -5443 2122 22 183 268 81 106 chr9 31442916 31443039 -86419588 + L2 LINE L2 3175 3294 -19 185 273 0 0 chr9 31443310 31443354 -86419273 - MIR3 SINE MIR -48 160 117 32 57 0 0 chr9 31443656 31443709 -86418918 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr9 31443765 31443791 -86418836 + AT_rich Low_complexity Low_complexity 1 26 0 1605 330 105 20 chr9 31443895 31445229 -86417398 - L2 LINE L2 -1 3312 1870 25 51 0 0 chr9 31445286 31445325 -86417302 + AT_rich Low_complexity Low_complexity 1 39 0 273 271 71 57 chr9 31446716 31446856 -86415771 + MLT1L LTR MaLR 5 146 -469 21 0 0 0 chr9 31447044 31447065 -86415562 + AT_rich Low_complexity Low_complexity 1 21 0 293 206 88 0 chr9 31447530 31447598 -86415029 - MER103 DNA DNA -42 124 51 1377 288 49 10 chr9 31447677 31448087 -86414540 - MLT1F1 LTR MaLR -139 428 3 2361 76 0 0 chr9 31448783 31449084 -86413543 - AluY SINE Alu -10 301 1 219 69 0 0 chr9 31449991 31450020 -86412607 + (TA)n Simple_repeat Simple_repeat 2 30 0 446 267 30 23 chr9 31450020 31450151 -86412476 - MLT1F1 LTR MaLR -322 245 114 294 250 10 21 chr9 31450160 31450256 -86412371 + (TA)n Simple_repeat Simple_repeat 1 95 0 8348 64 22 0 chr9 31450777 31451899 -86410728 - L1P LINE L1 -1188 4958 3812 631 330 104 40 chr9 31451952 31452573 -86410054 + L2 LINE L2 2658 3311 -2 1029 205 147 23 chr9 31453414 31453721 -86408906 + MER2 DNA MER2_type 1 345 0 22 0 0 0 chr9 31454187 31454209 -86408418 + AT_rich Low_complexity Low_complexity 1 22 0 493 126 11 42 chr9 31454870 31454965 -86407662 - L1PA16 LINE L1 -2 6164 6073 735 283 67 82 chr9 31454967 31455960 -86406667 - LTR28 LTR ERV1 0 1755 1 29787 130 21 3 chr9 31455960 31460373 -86402254 - LTR28-int LTR ERV1 0 7091 2603 250 307 60 67 chr9 31460611 31460761 -86401866 - MIR SINE MIR -94 168 20 2747 13 0 0 chr9 31463529 31463839 -86398788 - L1P1 LINE L1 -349 5806 5497 962 34 0 0 chr9 31463839 31463955 -86398672 + L1PA2 LINE L1 6037 6153 -2 33 25 0 0 chr9 31463982 31464022 -86398605 + AT_rich Low_complexity Low_complexity 1 40 0 1123 261 106 55 chr9 31464349 31464692 -86397935 + L1MEc LINE L1 241 565 -6042 285 75 0 0 chr9 31464692 31464732 -86397895 + (TG)n Simple_repeat Simple_repeat 1 40 0 186 43 0 0 chr9 31464731 31464754 -86397873 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1123 261 106 55 chr9 31464732 31464917 -86397710 + L1MEc LINE L1 565 784 -5823 405 0 0 0 chr9 31464917 31464962 -86397665 + (CA)n Simple_repeat Simple_repeat 2 46 0 1123 261 106 55 chr9 31464962 31465049 -86397578 + L1MEc LINE L1 784 865 -5742 565 274 216 28 chr9 31465053 31465410 -86397217 + MLT2F LTR ERVL 34 457 -206 306 0 0 0 chr9 31465513 31465547 -86397080 + (TG)n Simple_repeat Simple_repeat 2 35 0 540 223 6 13 chr9 31465607 31465764 -86396863 + L1MEc LINE L1 898 1053 -5554 893 246 137 49 chr9 31465802 31466212 -86396415 + L1MD2 LINE L1 5912 6357 -2 302 216 33 93 chr9 31466396 31466594 -86396033 + L1MEc LINE L1 1809 2095 -4455 2762 76 3 3 chr9 31468221 31468576 -86394051 - THE1A LTR MaLR 0 355 1 10744 114 14 0 chr9 31468576 31470135 -86392492 - THE1A-int LTR MaLR 0 1580 1 2539 107 3 0 chr9 31470135 31470489 -86392138 - THE1A LTR MaLR 0 355 1 22 0 0 0 chr9 31471344 31471366 -86391261 + AT_rich Low_complexity Low_complexity 1 22 0 2025 208 60 40 chr9 31471480 31471980 -86390647 + MER67D LTR ERV1 1 510 -4 22 0 0 0 chr9 31473108 31473130 -86389497 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr9 31473773 31473799 -86388828 + AT_rich Low_complexity Low_complexity 1 26 0 2067 202 2 2 chr9 31474173 31474569 -86388058 - L1PA15 LINE L1 -3 6162 5767 186 300 18 100 chr9 31474613 31474723 -86387904 - L2 LINE L2 -317 2955 2855 189 107 0 0 chr9 31474731 31474759 -86387868 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 571 231 148 35 chr9 31474970 31475173 -86387454 + ERVL LTR ERVL 2 227 -5537 * 4403 108 13 149 chr9 31475171 31476755 -86385872 + pTR5 LTR ERV1 741 2606 0 740 250 47 42 chr9 31476807 31477043 -86385584 + ERVL LTR ERVL 299 535 -5229 257 81 27 0 chr9 31477043 31477080 -86385547 + L1PA12 LINE L1 4525 4562 -1584 804 93 0 0 chr9 31477081 31477188 -86385439 + AluY SINE Alu 187 293 -18 5381 118 47 5 chr9 31477190 31477379 -86385248 + L1PA12 LINE L1 4549 4729 -1439 2695 171 68 20 chr9 31477379 31477940 -86384687 - LTR4 LTR ERV1 0 588 1 5381 118 47 5 chr9 31477940 31478456 -86384171 + L1PA12 LINE L1 4729 6164 -4 5459 118 47 5 chr9 31478456 31479329 -86383298 + L1PA12 LINE L1 5255 6164 -4 18546 210 46 16 chr9 31479347 31483131 -86379496 + ERVL LTR ERVL 530 4202 -1562 2000 128 24 0 chr9 31483131 31483421 -86379206 - AluSq SINE Alu -14 299 3 1618 119 116 11 chr9 31483423 31483691 -86378936 - AluSx SINE Alu -16 296 1 18546 210 46 16 chr9 31483691 31483797 -86378830 + ERVL LTR ERVL 4202 4537 -1227 1001 306 70 44 chr9 31484243 31484694 -86377933 + MLT1E LTR MaLR 4 475 -118 1799 130 68 40 chr9 31484694 31485048 -86377579 + THE1B LTR MaLR 1 364 0 1001 306 70 44 chr9 31485048 31485168 -86377459 + MLT1E LTR MaLR 475 590 -3 1194 251 53 29 chr9 31485301 31485675 -86376952 + L1ME1 LINE L1 5779 6161 -5 305 304 9 43 chr9 31485896 31486011 -86376616 - MLT1J2 LTR MaLR -339 111 1 270 132 0 0 chr9 31486247 31486300 -86376327 + (TA)n Simple_repeat Simple_repeat 1 53 0 378 0 0 0 chr9 31486734 31486776 -86375851 + (TG)n Simple_repeat Simple_repeat 2 43 0 1707 214 52 31 chr9 31487122 31487538 -86375089 - MSTA LTR MaLR 0 408 1 7859 197 40 12 chr9 31487538 31489144 -86373483 - MSTA-int LTR MaLR 0 1651 1 2069 179 65 2 chr9 31489144 31489547 -86373080 - MSTA LTR MaLR 0 428 1 2460 253 90 41 chr9 31490507 31493035 -86369592 - L1MCb LINE L1 -3082 3482 704 8863 170 28 33 chr9 31493052 31494258 -86368369 + Tigger3(Golem) DNA MER2_type 14 1225 -1804 1340 238 21 7 chr9 31494258 31494540 -86368087 + AluJo SINE Alu 1 286 -26 8863 170 28 33 chr9 31494540 31494561 -86368066 + Tigger3(Golem) DNA MER2_type 1225 1245 -1784 1576 208 16 13 chr9 31494561 31494869 -86367758 - AluJb SINE Alu -1 311 3 8863 170 28 33 chr9 31494869 31494880 -86367747 + Tigger3(Golem) DNA MER2_type 1245 1255 -1774 282 73 0 0 chr9 31494880 31494921 -86367706 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 8863 170 28 33 chr9 31494921 31495394 -86367233 + Tigger3(Golem) DNA MER2_type 1255 1718 -1311 325 192 0 0 chr9 31495397 31495449 -86367178 + Tigger3(Golem) DNA MER2_type 2986 3037 0 567 253 24 91 chr9 31495491 31495787 -86366840 - L1MCb LINE L1 -5436 609 334 1107 234 117 45 chr9 31495819 31496221 -86366406 + MSTB2 LTR MaLR 23 453 -4 809 274 75 60 chr9 31496227 31496559 -86366068 - L1MCb LINE L1 -5765 280 5 595 361 95 27 chr9 31496561 31497137 -86365490 - L2 LINE L2 -201 3071 2464 26 82 0 0 chr9 31497944 31498005 -86364622 + AT_rich Low_complexity Low_complexity 1 61 0 548 308 69 12 chr9 31498010 31498257 -86364370 - MIR SINE MIR 0 262 2 232 219 254 18 chr9 31498750 31498864 -86363763 - MER5A DNA MER1_type -2 187 47 21 0 0 0 chr9 31500453 31500474 -86362153 + AT_rich Low_complexity Low_complexity 1 21 0 204 277 0 0 chr9 31501157 31501240 -86361387 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 26 0 0 0 chr9 31501297 31501323 -86361304 + AT_rich Low_complexity Low_complexity 1 26 0 276 303 76 95 chr9 31502889 31503153 -86359474 - MIR SINE MIR -3 259 1 248 261 11 0 chr9 31503295 31503387 -86359240 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 2547 196 15 67 chr9 31503433 31504091 -86358536 - L1MB5 LINE L1 -7 6167 5544 1757 253 50 14 chr9 31504097 31504752 -86357875 - L1MB5 LINE L1 -743 5403 4744 328 322 40 66 chr9 31507038 31507311 -86355316 + L1MDa LINE L1 19 284 -6256 742 170 7 7 chr9 31507340 31507493 -86355134 + GA-rich Low_complexity Low_complexity 2 154 0 30478 105 11 13 chr9 31507605 31509245 -86353382 + L1PA7 LINE L1 688 2330 -3824 184 29 29 29 chr9 31509245 31509279 -86353348 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 30478 105 11 13 chr9 31509279 31512248 -86350379 + L1PA7 LINE L1 2330 5295 -859 2444 76 0 10 chr9 31512248 31512550 -86350077 + AluY SINE Alu 1 299 -12 30478 105 11 13 chr9 31512550 31513409 -86349218 + L1PA7 LINE L1 5295 6154 0 746 329 32 7 chr9 31513410 31513693 -86348934 + L2 LINE L2 1776 2065 -1249 262 322 0 0 chr9 31513769 31513856 -86348771 - L1ME LINE L1 -302 5819 5733 2578 107 6 3 chr9 31514382 31514745 -86347882 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr9 31516238 31516261 -86346366 + AT_rich Low_complexity Low_complexity 1 23 0 546 16 0 0 chr9 31516899 31516962 -86345665 + (TA)n Simple_repeat Simple_repeat 1 63 0 21 0 0 0 chr9 31517636 31517657 -86344970 + AT_rich Low_complexity Low_complexity 1 21 0 6592 204 40 6 chr9 31517695 31518978 -86343649 + L1M1 LINE L1 9 1335 -6230 4484 106 20 42 chr9 31518986 31519753 -86342874 + L1MA2 LINE L1 5477 6226 -78 1407 65 107 9 chr9 31519754 31519969 -86342658 + L1MA2 LINE L1 6069 6304 0 1615 174 68 0 chr9 31521963 31522244 -86340383 + AluJb SINE Alu 1 300 -12 1565 207 52 3 chr9 31523021 31523364 -86339263 - MLT1A1 LTR MaLR -2 363 4 199 54 54 0 chr9 31524371 31524408 -86338219 + (CA)n Simple_repeat Simple_repeat 1 39 0 1567 198 71 40 chr9 31524563 31524942 -86337685 + MSTD LTR MaLR 6 396 0 2232 108 7 0 chr9 31525250 31525546 -86337081 + AluSq SINE Alu 1 298 -15 2661 166 22 2 chr9 31525643 31526143 -86336484 - L1MA6 LINE L1 -4 6296 5787 1842 290 56 59 chr9 31526153 31526995 -86335632 - L1M1 LINE L1 -6654 911 73 2162 153 11 24 chr9 31528552 31528932 -86333695 + THE1C LTR MaLR 1 375 0 7756 129 10 73 chr9 31528932 31530605 -86332022 + THE1C-int LTR MaLR 1 1580 0 2081 158 13 16 chr9 31530607 31530981 -86331646 + THE1C LTR MaLR 3 375 0 198 0 0 0 chr9 31532472 31532494 -86330133 + (CA)n Simple_repeat Simple_repeat 2 23 0 2078 127 0 13 chr9 31532825 31533140 -86329487 - AluSx SINE Alu -1 311 1 821 282 127 42 chr9 31534248 31534776 -86327851 + MER90 LTR ERV1 1 573 -2 199 325 83 45 chr9 31534920 31535077 -86327550 - L2 LINE L2 -607 2707 2545 297 346 0 0 chr9 31535184 31535291 -86327336 - L2 LINE L2 -1008 2306 2200 2233 244 15 31 chr9 31536121 31536801 -86325826 + L1M4 LINE L1 4491 5159 -987 1996 112 22 47 chr9 31537072 31537393 -86325234 - AluSq SINE Alu 0 313 1 308 296 0 0 chr9 31537660 31537731 -86324896 + MER5A DNA MER1_type 55 125 -64 369 345 49 31 chr9 31538368 31538655 -86323972 + MLT1J LTR MaLR 16 307 -204 996 315 30 36 chr9 31539077 31539759 -86322868 - L1M2 LINE L1 -6425 1160 9 375 297 65 39 chr9 31539906 31540135 -86322492 + HAL1 LINE L1 95 329 -2178 429 278 94 13 chr9 31540267 31540501 -86322126 + HAL1 LINE L1 1088 1340 -1167 1366 299 108 25 chr9 31540533 31541449 -86321178 + HAL1 LINE L1 1487 2478 -29 923 294 54 11 chr9 31542257 31542536 -86320091 + MER45C DNA AcHobo 8 298 -655 30 0 0 0 chr9 31543762 31543792 -86318835 + AT_rich Low_complexity Low_complexity 1 30 0 2418 126 6 6 chr9 31543934 31544298 -86318329 + THE1B LTR MaLR 1 364 0 407 253 123 25 chr9 31544562 31544724 -86317903 + MIR SINE MIR 84 261 -1 264 333 21 0 chr9 31545658 31545802 -86316825 - HAL1b LINE L1 -770 578 432 586 119 48 6 chr9 31546010 31546347 -86316280 + (TA)n Simple_repeat Simple_repeat 1 351 0 1891 127 14 7 chr9 31546347 31546630 -86315997 - AluSg SINE Alu -25 285 1 314 246 0 10 chr9 31546662 31546760 -86315867 + L1MC4 LINE L1 7901 8015 -27 25 31 0 0 chr9 31546763 31546795 -86315832 + AT_rich Low_complexity Low_complexity 1 32 0 2033 125 3 13 chr9 31547390 31547694 -86314933 + AluSg SINE Alu 1 301 -9 183 42 0 0 chr9 31547980 31548004 -86314623 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 203 195 24 0 chr9 31548496 31548537 -86314090 + (TATG)n Simple_repeat Simple_repeat 2 43 0 189 300 17 17 chr9 31548706 31548766 -86313861 + MIR SINE MIR 16 75 -133 1283 315 32 99 chr9 31548790 31549717 -86312910 + L2 LINE L2 418 1282 -2032 367 258 24 32 chr9 31549811 31549935 -86312692 + L2 LINE L2 2278 2400 -914 857 301 70 55 chr9 31549978 31550433 -86312194 + L2 LINE L2 2852 3313 0 237 326 0 0 chr9 31550443 31550538 -86312089 + L1MCb LINE L1 790 884 -5161 582 220 0 0 chr9 31550538 31550656 -86311971 + L1PB4 LINE L1 6028 6145 -11 2532 140 24 7 chr9 31550779 31551200 -86311427 + MSTA LTR MaLR 1 428 0 341 294 82 27 chr9 31552931 31553077 -86309550 + MIR SINE MIR 91 244 -18 438 139 100 52 chr9 31553251 31553380 -86309247 + L1MA8 LINE L1 6070 6197 -94 405 127 14 0 chr9 31553380 31553449 -86309178 + L1MA9 LINE L1 6241 6312 0 438 139 100 52 chr9 31553449 31553469 -86309158 + L1MA8 LINE L1 6197 6215 -76 564 288 124 8 chr9 31553888 31554138 -86308489 - LTR16A1 LTR ERVL 0 457 179 479 292 116 13 chr9 31554804 31555201 -86307426 + MLT1L LTR MaLR 131 609 -6 740 288 0 41 chr9 31555232 31555451 -86307176 + MER63A DNA MER1_type 1 210 0 376 299 28 14 chr9 31555454 31555598 -86307029 - LTR67 LTR ERVL -10 547 402 2589 85 98 5 chr9 31555673 31556083 -86306544 + LTR7 LTR ERV1 1 448 -2 36 77 0 0 chr9 31556553 31556631 -86305996 + AT_rich Low_complexity Low_complexity 1 78 0 302 321 36 29 chr9 31556869 31557009 -86305618 + L1MB7 LINE L1 4067 4207 -1939 338 194 10 51 chr9 31557175 31557273 -86305354 + L1MB7 LINE L1 4178 4271 -1875 * 3101 213 31 39 chr9 31557267 31558043 -86304584 + L1MA9 LINE L1 5505 6274 -38 23 0 0 0 chr9 31558043 31558066 -86304561 + AT_rich Low_complexity Low_complexity 1 23 0 1876 250 58 31 chr9 31558100 31558843 -86303784 + L1MB7 LINE L1 4272 5034 -1112 245 95 0 81 chr9 31558911 31558985 -86303642 + (TA)n Simple_repeat Simple_repeat 1 68 0 230 288 31 19 chr9 31558931 31559040 -86303587 + (TATAG)n Simple_repeat Simple_repeat 4 117 -48 * 4061 35 17 0 chr9 31559040 31559522 -86303105 + LTR2B LTR ERV1 1 490 0 230 288 31 19 chr9 31559522 31559572 -86303055 + (TATAG)n Simple_repeat Simple_repeat 117 165 0 299 174 10 0 chr9 31559573 31559643 -86302984 - L1ME LINE L1 -485 5679 5605 2120 251 58 51 chr9 31559674 31559861 -86302766 + L1MB7 LINE L1 5088 5272 -912 408 20 0 0 chr9 31559861 31559910 -86302717 + (TTA)n Simple_repeat Simple_repeat 1 49 0 2120 251 58 51 chr9 31559910 31559940 -86302687 + L1MB7 LINE L1 5272 5300 -884 2561 62 0 12 chr9 31559940 31560276 -86302351 - L1PA7 LINE L1 0 6154 5823 2120 251 58 51 chr9 31560276 31560340 -86302287 + L1MB7 LINE L1 5300 5362 -822 1484 219 7 3 chr9 31560340 31560641 -86301986 + AluJo SINE Alu 5 306 -6 2120 251 58 51 chr9 31560641 31561416 -86301211 + L1MB7 LINE L1 5362 6174 -10 271 407 16 41 chr9 31562059 31562302 -86300325 + L2 LINE L2 2986 3222 -50 23 0 0 0 chr9 31563391 31563414 -86299213 + AT_rich Low_complexity Low_complexity 1 23 0 379 329 33 33 chr9 31563425 31563635 -86298992 + L1M4 LINE L1 3608 3817 -2329 32 0 0 0 chr9 31563965 31563997 -86298630 + AT_rich Low_complexity Low_complexity 1 32 0 1603 126 0 69 chr9 31564627 31564904 -86297723 - AluJo SINE Alu -16 296 39 226 175 0 32 chr9 31565052 31565115 -86297512 + CT-rich Low_complexity Low_complexity 1 61 0 266 169 15 0 chr9 31565133 31565198 -86297429 + (CA)n Simple_repeat Simple_repeat 2 67 0 241 271 35 12 chr9 31566012 31566097 -86296530 - L1MC4 LINE L1 -1342 6700 6614 229 330 51 17 chr9 31566102 31566220 -86296407 + L2 LINE L2 3175 3296 -17 25 51 0 0 chr9 31566225 31566264 -86296363 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr9 31566671 31566702 -86295925 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 31566919 31566949 -86295678 + AT_rich Low_complexity Low_complexity 1 30 0 3872 169 34 14 chr9 31567021 31567786 -86294841 + L1MA10 LINE L1 5553 6332 -2 25 0 0 0 chr9 31568036 31568061 -86294566 + AT_rich Low_complexity Low_complexity 1 25 0 406 321 92 5 chr9 31568580 31568764 -86293863 + MIR SINE MIR 10 209 -53 485 254 94 50 chr9 31568972 31569173 -86293454 + L1ME1 LINE L1 5909 6082 -84 218 304 185 0 chr9 31569622 31569757 -86292870 + MIR3 SINE MIR 9 168 -40 1821 160 20 23 chr9 31570090 31570434 -86292193 + MER2 DNA MER2_type 2 344 0 1841 164 61 19 chr9 31571360 31571720 -86290907 - THE1C LTR MaLR 0 375 1 204 83 0 56 chr9 31571735 31571771 -86290856 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 756 146 49 0 chr9 31572241 31572385 -86290242 - L1MB1 LINE L1 -1 6167 6017 1692 121 51 81 chr9 31572407 31572778 -86289849 + THE1C LTR MaLR 1 360 -15 1965 136 163 8 chr9 31573266 31573635 -86288992 + MSTA LTR MaLR 3 428 0 1905 142 3 0 chr9 31574413 31574702 -86287925 - AluSx SINE Alu -22 290 1 587 261 38 16 chr9 31574921 31575131 -86287496 + L1MCa LINE L1 1 192 -5853 1026 269 93 25 chr9 31575168 31575565 -86287062 + MLT1C LTR MaLR 35 458 -9 454 254 16 8 chr9 31575566 31575688 -86286939 + L1MCa LINE L1 218 340 -5705 709 264 26 10 chr9 31575900 31576093 -86286534 + L1MCa LINE L1 359 554 -5491 2110 104 17 7 chr9 31576099 31576398 -86286229 + AluSc SINE Alu 1 302 -7 1036 256 62 39 chr9 31576509 31576942 -86285685 + L1MCa LINE L1 570 1012 -5033 541 318 29 0 chr9 31576995 31577240 -86285387 - L1MCa LINE L1 -3653 2991 2740 1083 279 16 5 chr9 31577251 31577624 -86285003 + L1MCa LINE L1 2999 3375 -3269 2595 258 90 63 chr9 31577654 31578518 -86284109 + L1MCb LINE L1 4 843 -5707 441 69 0 0 chr9 31578518 31578576 -86284051 + MER41B LTR ERV1 575 632 -3 2595 258 90 63 chr9 31578576 31579293 -86283334 + L1MCb LINE L1 843 1699 -4851 431 298 85 20 chr9 31579326 31579574 -86283053 - L1M4 LINE L1 -6275 267 4 3691 110 32 0 chr9 31579576 31580113 -86282514 - MER41A LTR ERV1 0 554 1 13105 136 59 30 chr9 31580113 31583339 -86279288 - MER41A-int LTR ERV1 -2 5944 2167 823 92 144 10 chr9 31583315 31583470 -86279157 - MER41A-int LTR ERV1 -3929 2017 1503 * 4395 165 83 29 chr9 31583457 31585057 -86277570 - MER41A-int LTR ERV1 -4171 1775 3 3589 96 36 11 chr9 31585141 31585664 -86276963 - MER41A LTR ERV1 0 554 19 354 143 0 0 chr9 31585982 31586045 -86276582 + (CA)n Simple_repeat Simple_repeat 1 63 0 1898 226 64 2 chr9 31586151 31586575 -86276052 - MER82 DNA MER2_type 0 653 204 245 310 9 9 chr9 31586827 31586943 -86275684 + Tigger2 DNA MER2_type 757 1120 -1598 3512 165 9 4 chr9 31587067 31587715 -86274912 + MER50 LTR ERV1 1 711 -23 611 231 0 0 chr9 31587717 31587834 -86274793 - MER82 DNA MER2_type -527 126 10 2053 130 0 3 chr9 31587980 31588281 -86274346 + AluSg SINE Alu 1 300 -10 22 35 0 0 chr9 31589356 31589385 -86273242 + AT_rich Low_complexity Low_complexity 1 29 0 1011 301 79 70 chr9 31589612 31590269 -86272358 - MLT2F LTR ERVL 0 663 1 1101 233 8 8 chr9 31590893 31591133 -86271494 - LTR47B LTR ERVL 0 443 204 424 354 59 60 chr9 31592181 31592844 -86269783 + L2 LINE L2 1632 2293 -1021 1983 151 25 25 chr9 31592916 31593103 -86269524 + L1PA16 LINE L1 5802 5991 -175 1803 151 178 6 chr9 31593103 31593468 -86269159 - MSTA LTR MaLR 0 428 1 1983 151 25 25 chr9 31593468 31593644 -86268983 + L1PA16 LINE L1 5990 6165 -1 346 267 0 59 chr9 31595708 31595843 -86266784 - L1ME2 LINE L1 -73 6091 5965 280 322 107 27 chr9 31595837 31596203 -86266424 - L1ME LINE L1 -4885 1499 1105 * 690 306 90 29 chr9 31596190 31596828 -86265799 - L1ME LINE L1 -5113 1259 585 1981 181 67 20 chr9 31596938 31597342 -86265285 + MSTC LTR MaLR 1 423 -5 350 302 55 25 chr9 31597439 31597674 -86264953 - L1MEc LINE L1 -4762 2360 2119 1828 187 20 33 chr9 31597747 31598137 -86264490 + MLT1B LTR MaLR 4 388 -2 3054 218 66 25 chr9 31598299 31599539 -86263088 - L1MB8 LINE L1 -12 6166 4869 263 316 70 29 chr9 31599653 31599925 -86262702 - L1MEc LINE L1 -4928 1495 1213 228 337 58 0 chr9 31600520 31600606 -86262021 - L1MEc LINE L1 -5985 438 348 3081 175 61 17 chr9 31600697 31601350 -86261277 - L1MA10 LINE L1 -1 6333 5652 2556 128 12 0 chr9 31601369 31601784 -86260843 - L1MA1 LINE L1 0 6302 5883 5019 87 9 1 chr9 31602361 31603055 -86259572 - L1PA7 LINE L1 -1937 4209 3511 8151 78 7 23 chr9 31603056 31605005 -86257622 + L1PA7 LINE L1 4220 6152 -2 253 228 0 0 chr9 31605027 31605084 -86257543 - L1MA10 LINE L1 -986 5373 5317 1340 97 0 0 chr9 31605363 31605549 -86257078 - L1PA7 LINE L1 -7 6147 5962 5173 66 18 0 chr9 31605549 31606297 -86256330 + L1PA7 LINE L1 5185 5944 -210 3633 229 22 15 chr9 31606294 31607600 -86255027 - L1MA1 LINE L1 -501 5667 4360 * 745 167 8 0 chr9 31607613 31607733 -86254894 - FLAM_A SINE Alu -21 121 1 1641 207 11 11 chr9 31607734 31608091 -86254536 + MER65A LTR ERV1 62 418 -27 892 51 103 0 chr9 31608089 31608206 -86254421 - MER9 LTR ERVK -382 129 1 * 2819 251 60 43 chr9 31608208 31609375 -86253252 + MER65A-int LTR ERV1 61 1247 -3624 974 210 65 96 chr9 31609403 31609535 -86253092 + MER65A-int LTR ERV1 1516 1651 -5107 2825 7 0 0 chr9 31609535 31609845 -86252782 + AluY SINE Alu 2 311 0 974 210 65 96 chr9 31609845 31610494 -86252133 + MER65A-int LTR ERV1 1651 2436 -4322 2266 102 7 3 chr9 31610563 31610868 -86251759 - AluSc SINE Alu -1 308 3 615 171 0 55 chr9 31611082 31611228 -86251399 + MER57-int LTR ERV1 705 842 -6695 254 235 39 69 chr9 31611313 31611415 -86251212 + MER57-int LTR ERV1 841 939 -4184 32 26 0 0 chr9 31611560 31611599 -86251028 + AT_rich Low_complexity Low_complexity 1 39 0 1876 121 7 4 chr9 31611601 31611874 -86250753 + AluSx SINE Alu 1 274 -38 1870 204 16 18 chr9 31611876 31612312 -86250315 + L1PB3 LINE L1 3371 3805 -2341 1165 163 37 0 chr9 31612318 31612644 -86249983 + L1PB3 LINE L1 5100 5439 -715 6216 194 108 37 chr9 31612645 31614157 -86248470 - MER52A LTR ERV1 0 1755 61 3177 137 13 109 chr9 31614192 31614476 -86248151 + L1PB3 LINE L1 5527 5708 -446 347 89 18 0 chr9 31614476 31614532 -86248095 + (TG)n Simple_repeat Simple_repeat 2 58 0 3177 137 13 109 chr9 31614532 31614932 -86247695 + L1PB3 LINE L1 5708 6145 -9 927 187 7 93 chr9 31615064 31615215 -86247412 - L1MA1 LINE L1 -1792 4354 4235 2078 120 0 0 chr9 31615215 31615533 -86247094 + AluSx SINE Alu 1 318 0 927 187 7 93 chr9 31615533 31615658 -86246969 - L1MA1 LINE L1 -1911 4235 4101 293 111 0 22 chr9 31615656 31615701 -86246926 - L1P5 LINE L1 -433 5723 5680 * 264 30 0 0 chr9 31615872 31615905 -86246722 + (CA)n Simple_repeat Simple_repeat 2 34 0 270 56 0 0 chr9 31616138 31616174 -86246453 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2013 141 0 0 chr9 31616236 31616527 -86246100 - AluSx SINE Alu -11 301 11 1049 236 5 0 chr9 31616779 31616982 -86245645 + MER45B DNA AcHobo 4 207 -833 332 211 0 53 chr9 31616986 31617062 -86245565 + MER45B DNA AcHobo 542 613 -427 1535 284 20 36 chr9 31617856 31618405 -86244222 + MLT1F LTR MaLR 3 542 0 21 36 0 0 chr9 31618406 31618434 -86244193 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr9 31618537 31618582 -86244045 + AT_rich Low_complexity Low_complexity 1 45 0 728 278 63 4 chr9 31618950 31619205 -86243422 + L1MCc LINE L1 206 475 -5948 * 991 271 29 20 chr9 31619204 31619547 -86243080 + L1ME1 LINE L1 5806 6151 -15 261 252 17 26 chr9 31619570 31619685 -86242942 + (TA)n Simple_repeat Simple_repeat 1 114 0 21 0 0 0 chr9 31619832 31619853 -86242774 + AT_rich Low_complexity Low_complexity 1 21 0 437 216 72 12 chr9 31619963 31620130 -86242497 + LTR50 LTR ERVL 3 177 -596 24 0 0 0 chr9 31620586 31620610 -86242017 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr9 31620859 31620894 -86241733 + AT_rich Low_complexity Low_complexity 1 35 0 585 296 138 33 chr9 31621898 31622832 -86239795 - L1MEc LINE L1 -3935 2461 1430 1015 185 0 15 chr9 31623471 31623671 -86238956 - L1PB1 LINE L1 0 6151 5955 385 291 104 32 chr9 31624504 31624724 -86237903 - MLT1I LTR MaLR -76 333 98 570 280 103 10 chr9 31625073 31625382 -86237245 - MLT1D LTR MaLR 0 505 276 185 350 62 56 chr9 31625428 31625588 -86237039 - MIR SINE MIR -13 249 89 334 259 54 27 chr9 31626971 31627118 -86235509 + L1M4 LINE L1 4557 4707 -1439 313 291 106 17 chr9 31627204 31627441 -86235186 + L1M4 LINE L1 4943 5200 -946 24 0 0 0 chr9 31627760 31627784 -86234843 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr9 31629196 31629217 -86233410 + AT_rich Low_complexity Low_complexity 1 21 0 3020 154 24 46 chr9 31629718 31630159 -86232468 - L1P4 LINE L1 -371 5795 5378 1545 212 3 7 chr9 31630159 31630452 -86232175 - AluSx SINE Alu -17 295 4 3020 154 24 46 chr9 31630452 31630912 -86231715 - L1P4 LINE L1 -788 5378 4910 275 213 0 0 chr9 31630913 31630974 -86231653 + L1P LINE L1 4501 4561 -1585 1155 202 0 4 chr9 31630976 31631219 -86231408 + L1 LINE L1 4655 4896 -1250 661 302 83 0 chr9 31631403 31631691 -86230936 - L1M4 LINE L1 -1312 4834 4523 443 297 45 22 chr9 31631694 31631916 -86230711 - L1M4 LINE L1 -1984 4162 3936 195 184 0 0 chr9 31631916 31631954 -86230673 + (TG)n Simple_repeat Simple_repeat 2 39 0 341 237 35 35 chr9 31631954 31632068 -86230559 + L1MC4 LINE L1 6588 6701 -1341 5057 185 33 43 chr9 31632068 31632400 -86230227 - L1MA9 LINE L1 -167 6214 5880 216 0 0 0 chr9 31632400 31632424 -86230203 + (TG)n Simple_repeat Simple_repeat 2 25 0 5057 185 33 43 chr9 31632424 31634170 -86228457 - L1MA9 LINE L1 -501 5880 4162 1531 246 45 57 chr9 31634185 31634562 -86228065 - L1MA9 LINE L1 -3419 2796 2463 300 27 0 0 chr9 31634562 31634599 -86228028 + (CA)n Simple_repeat Simple_repeat 2 38 0 1531 246 45 57 chr9 31634599 31634933 -86227694 - L1MA9 LINE L1 -3752 2463 2126 1477 205 17 7 chr9 31634954 31635252 -86227375 - AluJb SINE Alu -8 304 4 1107 261 19 14 chr9 31635296 31635679 -86226948 + L1M4 LINE L1 1121 1759 -4554 297 54 54 0 chr9 31635746 31635802 -86226825 + (TA)n Simple_repeat Simple_repeat 2 60 0 36 40 0 0 chr9 31635847 31635897 -86226730 + AT_rich Low_complexity Low_complexity 1 50 0 1180 298 74 29 chr9 31636081 31636661 -86225966 + L1M4 LINE L1 3573 4178 -2204 1875 133 38 0 chr9 31636682 31636975 -86225652 + AluSx SINE Alu 1 304 -8 462 275 42 47 chr9 31636975 31637168 -86225459 + L1MC1 LINE L1 18 209 -6331 1706 218 64 8 chr9 31637918 31638390 -86224237 + L1M4 LINE L1 3520 4017 -2129 407 217 127 18 chr9 31638404 31638570 -86224057 + L1M4 LINE L1 4195 4378 -1768 4834 231 47 37 chr9 31638651 31641147 -86221480 + L1MC1 LINE L1 3961 6485 -242 4776 151 20 25 chr9 31641249 31642126 -86220501 + L1PA15 LINE L1 4857 5729 -436 2529 126 87 0 chr9 31642126 31642502 -86220125 + MLT2A2 LTR ERVL 1 418 -35 420 118 0 0 chr9 31642502 31642570 -86220057 + (TA)n Simple_repeat Simple_repeat 2 69 0 2529 126 87 0 chr9 31642570 31642607 -86220020 + MLT2A2 LTR ERVL 418 450 -3 4776 151 20 25 chr9 31642607 31643040 -86219587 + L1PA15 LINE L1 5729 6163 -2 1188 260 112 49 chr9 31643086 31643464 -86219163 - L1M4 LINE L1 -3725 2919 2566 1812 164 30 3 chr9 31643464 31643768 -86218859 - AluSx SINE Alu 0 312 1 1188 260 112 49 chr9 31643768 31644501 -86218126 - L1M4 LINE L1 -4078 2566 1718 10444 212 32 15 chr9 31644536 31647965 -86214662 + L1MA7 LINE L1 2763 6248 -43 250 103 0 0 chr9 31647997 31648036 -86214591 - L1MA7 LINE L1 -42 6249 6211 254 158 73 0 chr9 31648094 31648176 -86214451 + (TA)n Simple_repeat Simple_repeat 1 88 0 46 45 0 0 chr9 31648305 31648372 -86214255 + AT_rich Low_complexity Low_complexity 1 67 0 447 263 32 21 chr9 31648372 31648562 -86214065 - L1M4 LINE L1 -5302 1240 1049 4474 249 68 37 chr9 31648636 31650306 -86212321 - L1M4 LINE L1 -4848 1694 3 6580 69 12 0 chr9 31651720 31652849 -86209778 - L1PA8 LINE L1 -1 6171 5068 306 50 0 0 chr9 31652896 31652936 -86209691 + (TA)n Simple_repeat Simple_repeat 1 40 0 392 161 0 0 chr9 31654085 31654147 -86208480 + MER93b LTR ERV1 12 73 -300 * 417 176 0 0 chr9 31654144 31654218 -86208409 - MLT1A2 LTR MaLR -295 79 6 241 371 0 21 chr9 31655505 31655602 -86207025 + MIR SINE MIR 38 132 -130 1065 70 14 7 chr9 31655621 31655763 -86206864 - AluSc SINE Alu -10 299 157 2009 243 84 20 chr9 31656118 31656907 -86205720 - L1M4 LINE L1 -2878 3268 2430 2087 260 17 11 chr9 31656925 31657448 -86205179 + L1PA13 LINE L1 2049 2574 -4981 775 165 88 18 chr9 31657461 31657631 -86204996 + L1PA13 LINE L1 5982 6163 0 4790 253 71 44 chr9 31657631 31658710 -86203917 + L1PA13 LINE L1 2359 3407 -4158 330 115 0 0 chr9 31658710 31658762 -86203865 + (TA)n Simple_repeat Simple_repeat 2 53 0 4790 253 71 44 chr9 31658762 31658785 -86203842 + L1PA13 LINE L1 3407 3428 -4137 11499 25 1 2 chr9 31658785 31660920 -86201707 - L1PA3 LINE L1 -2 6153 4021 4790 253 71 44 chr9 31660920 31661043 -86201584 + L1PA13 LINE L1 3428 3546 -4019 233 56 0 28 chr9 31661043 31661079 -86201548 + (TA)n Simple_repeat Simple_repeat 2 36 0 4790 253 71 44 chr9 31661079 31661292 -86201335 + L1PA13 LINE L1 3546 3752 -3813 180 0 0 0 chr9 31661292 31661312 -86201315 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 4790 253 71 44 chr9 31661312 31661396 -86201231 + L1PA13 LINE L1 3752 3832 -3733 207 0 0 0 chr9 31661396 31661419 -86201208 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4790 253 71 44 chr9 31661419 31662801 -86199826 + L1PA13 LINE L1 3832 5175 -2390 448 168 20 10 chr9 31663722 31663823 -86198804 + CT-rich Low_complexity Low_complexity 3 104 0 2027 196 62 35 chr9 31663845 31664309 -86198318 - MER101B LTR ERV1 0 570 94 21 36 0 0 chr9 31665171 31665199 -86197428 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 31665946 31665975 -86196652 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr9 31666092 31666128 -86196499 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr9 31666361 31666404 -86196223 + AT_rich Low_complexity Low_complexity 1 43 0 467 252 236 8 chr9 31667282 31667524 -86195103 - L1M4 LINE L1 -2297 3849 3553 234 152 0 0 chr9 31667555 31667603 -86195024 - Alu SINE Alu -11 122 85 753 203 61 6 chr9 31667603 31667766 -86194861 - AluJo SINE Alu -130 182 11 274 281 140 22 chr9 31667806 31668390 -86194237 - L1M4 LINE L1 -2678 3468 2816 421 197 0 0 chr9 31668493 31668593 -86194034 - L1ME LINE L1 -348 5814 5715 571 214 58 0 chr9 31668599 31668753 -86193874 - L1MA8 LINE L1 -2 6289 6127 * 2485 185 17 35 chr9 31668750 31668830 -86193797 + L1MA8 LINE L1 5590 5670 -621 1922 98 14 44 chr9 31668830 31669127 -86193500 + AluSx SINE Alu 1 288 -24 2485 185 17 35 chr9 31669127 31669586 -86193041 + L1MA8 LINE L1 5670 6119 -172 231 170 0 0 chr9 31669669 31669716 -86192911 + (TG)n Simple_repeat Simple_repeat 2 48 0 2940 168 58 5 chr9 31669781 31670387 -86192240 - L1MA4 LINE L1 -5 6295 5658 362 222 65 9 chr9 31670391 31670499 -86192128 - L1MA4 LINE L1 -1754 4392 4279 * 5801 195 37 17 chr9 31670472 31671784 -86190843 - L1 LINE L1 -1475 4853 3515 4077 127 6 138 chr9 31671785 31672700 -86189927 + LTR25 LTR ERV1 1 794 0 4246 245 68 26 chr9 31672717 31675476 -86187151 - L1 LINE L1 -2812 3516 539 238 200 0 40 chr9 31676059 31676109 -86186518 - L1 LINE L1 -6092 167 120 183 347 61 95 chr9 31676463 31676725 -86185902 + L2 LINE L2 2897 3149 -123 275 222 48 24 chr9 31676752 31676919 -86185708 + (TA)n Simple_repeat Simple_repeat 1 171 0 24 53 0 0 chr9 31677055 31677093 -86185534 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr9 31677741 31677764 -86184863 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr9 31678002 31678034 -86184593 + AT_rich Low_complexity Low_complexity 1 32 0 922 241 118 29 chr9 31678534 31678849 -86183778 - MER2 DNA MER2_type 0 344 2 24 0 0 0 chr9 31679089 31679113 -86183514 + AT_rich Low_complexity Low_complexity 1 24 0 187 258 19 0 chr9 31679415 31679477 -86183150 + MIR SINE MIR 46 110 -98 1041 67 0 0 chr9 31679790 31679924 -86182703 + L1PA7 LINE L1 6019 6152 -2 21 89 0 0 chr9 31679955 31680011 -86182616 + AT_rich Low_complexity Low_complexity 1 56 0 2186 78 25 0 chr9 31680554 31680835 -86181792 - AluY SINE Alu -23 288 1 1482 211 21 27 chr9 31681713 31682045 -86180582 + MLT2C1 LTR ERVL 5 334 -63 717 192 3 3 chr9 31682048 31682368 -86180259 + (TA)n Simple_repeat Simple_repeat 1 320 0 2010 79 68 0 chr9 31683894 31684173 -86178454 + AluY SINE Alu 1 298 -13 703 130 0 0 chr9 31684370 31684470 -86178157 - AluS SINE Alu -213 100 1 32 0 0 0 chr9 31684525 31684557 -86178070 + AT_rich Low_complexity Low_complexity 1 32 0 220 200 36 0 chr9 31684586 31684641 -86177986 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 9725 203 68 81 chr9 31684773 31687980 -86174647 + L1MA4 LINE L1 11 3175 -4390 229 379 57 24 chr9 31688655 31688866 -86173761 - MIR SINE MIR -4 258 41 270 296 0 0 chr9 31689296 31689367 -86173260 + L1M4b LINE L1 735 805 -6054 504 264 101 76 chr9 31689794 31690134 -86172493 + L1M4b LINE L1 1188 1549 -5306 2152 114 3 0 chr9 31690134 31690433 -86172194 + AluSg SINE Alu 1 300 -10 504 264 101 76 chr9 31690433 31690656 -86171971 + L1M4b LINE L1 1549 1765 -5090 4856 169 19 13 chr9 31690661 31692271 -86170356 + L1PA15 LINE L1 4552 6165 0 229 176 29 15 chr9 31692276 31692336 -86170291 + (TA)n Simple_repeat Simple_repeat 1 64 -5 189 0 0 0 chr9 31692336 31692357 -86170270 + (TG)n Simple_repeat Simple_repeat 2 22 0 229 176 29 15 chr9 31692357 31692364 -86170263 + (TA)n Simple_repeat Simple_repeat 64 69 0 1195 264 107 15 chr9 31692365 31692823 -86169804 - MLT1D LTR MaLR -3 502 3 1116 278 30 83 chr9 31692825 31693118 -86169509 + L1M4b LINE L1 1754 2061 -4898 2081 100 17 0 chr9 31693118 31693419 -86169208 - AluSc SINE Alu -3 306 1 1116 278 30 83 chr9 31693419 31693827 -86168800 + L1M4b LINE L1 2061 2418 -4541 19963 30 3 2 chr9 31694058 31697262 -86165365 - L1PA3 LINE L1 -4 6151 2945 293 348 70 18 chr9 31697821 31698048 -86164579 - MLT1L LTR MaLR -18 597 359 3116 210 26 69 chr9 31699849 31700805 -86161822 + L1MA4 LINE L1 5042 5956 -1609 979 164 12 0 chr9 31700809 31700980 -86161647 - L1PA13 LINE L1 -6 6157 5985 6866 188 23 20 chr9 31700985 31702378 -86160249 - L1PA13 LINE L1 -4351 2446 1037 4805 188 35 20 chr9 31702386 31704066 -86158561 + L1MA4 LINE L1 5969 7668 -51 207 279 163 0 chr9 31705041 31705127 -86157500 - MIR SINE MIR -44 218 119 441 181 35 17 chr9 31705319 31705435 -86157192 - L1PA2 LINE L1 0 6155 6038 39 50 0 0 chr9 31705867 31705927 -86156700 + AT_rich Low_complexity Low_complexity 1 60 0 11172 149 27 25 chr9 31705963 31707963 -86154664 - Tigger1 DNA MER2_type 0 2418 414 321 169 0 0 chr9 31707963 31708022 -86154605 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 26 30 0 0 chr9 31710591 31710624 -86152003 + AT_rich Low_complexity Low_complexity 1 33 0 1898 191 50 35 chr9 31711374 31711916 -86150711 + MLT2A2 LTR ERVL 1 554 0 318 315 60 67 chr9 31712606 31713351 -86149276 + MER110-int LTR ERV1 2243 2982 -1665 1467 244 11 22 chr9 31714174 31714531 -86148096 - MLT1A1 LTR MaLR 0 365 13 24 77 0 0 chr9 31715299 31715351 -86147276 + AT_rich Low_complexity Low_complexity 1 52 0 795 283 71 30 chr9 31715591 31715987 -86146640 + MER92A LTR ERV1 1 412 0 681 166 225 0 chr9 31715989 31716158 -86146469 + MLT1E1 LTR MaLR 446 652 -2 21 0 0 0 chr9 31716462 31716483 -86146144 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 31716538 31716559 -86146068 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 31717061 31717082 -86145545 + AT_rich Low_complexity Low_complexity 1 21 0 4496 23 0 0 chr9 31717469 31717996 -86144631 - L1PA3 LINE L1 -349 5806 5280 2704 34 0 0 chr9 31717996 31718312 -86144315 + L1PA3 LINE L1 5836 6155 0 306 274 84 73 chr9 31718312 31718448 -86144179 + HAL1 LINE L1 907 1040 -1467 2249 57 0 27 chr9 31718448 31718747 -86143880 - AluY SINE Alu -15 296 6 306 274 84 73 chr9 31718747 31718884 -86143743 + HAL1 LINE L1 1040 1183 -1324 3629 137 23 2 chr9 31718998 31719729 -86142898 + L1PB1 LINE L1 5039 5791 -360 2656 88 0 31 chr9 31719758 31720146 -86142481 + L1PB1 LINE L1 5776 6151 0 301 233 38 25 chr9 31720174 31720333 -86142294 + L1MEc LINE L1 2156 2316 -4080 1413 274 147 27 chr9 31720393 31720918 -86141709 - MLT1E LTR MaLR -3 590 3 1395 249 81 20 chr9 31720933 31721524 -86141103 + L1MEc LINE L1 2345 2971 -3244 1560 262 60 44 chr9 31721648 31721773 -86140854 + L1MEc LINE L1 2958 3079 -3136 2110 113 0 3 chr9 31721773 31722082 -86140545 + AluSg SINE Alu 1 308 -2 1560 262 60 44 chr9 31722082 31723004 -86139623 + L1MEc LINE L1 3079 4022 -2193 984 269 130 7 chr9 31723013 31723560 -86139067 + L1MEc LINE L1 4234 4847 -1368 * 1627 149 8 102 chr9 31723536 31723839 -86138788 - L1M3 LINE L1 -577 5757 5496 1645 163 14 14 chr9 31723839 31724127 -86138500 + AluJb SINE Alu 7 294 -18 1627 149 8 102 chr9 31724127 31724205 -86138422 - L1M3 LINE L1 -838 5496 5412 2411 175 39 50 chr9 31724240 31724784 -86137843 + L1MA10 LINE L1 5736 6273 -61 306 0 0 0 chr9 31725381 31725415 -86137212 + (CA)n Simple_repeat Simple_repeat 2 35 0 578 274 56 41 chr9 31725473 31725670 -86136957 + MIR SINE MIR 25 224 -38 22 56 0 0 chr9 31725826 31725862 -86136765 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr9 31726088 31726111 -86136516 + AT_rich Low_complexity Low_complexity 1 23 0 1337 245 85 76 chr9 31726934 31727804 -86134823 + LTR1B LTR ERV1 1 1014 -6 276 91 0 0 chr9 31728780 31728824 -86133803 + (CAAAA)n Simple_repeat Simple_repeat 3 46 0 5394 132 13 2 chr9 31730197 31731119 -86131508 + L1PA13 LINE L1 5227 6158 -5 420 324 48 24 chr9 31731152 31731362 -86131265 - MIR SINE MIR 0 262 48 2328 78 0 10 chr9 31732585 31732892 -86129735 - AluSq SINE Alu -9 304 1 183 289 128 54 chr9 31732926 31733168 -86129459 + L2 LINE L2 2372 2631 -683 260 298 69 8 chr9 31733259 31733390 -86129237 + MIR SINE MIR 68 206 -56 402 205 0 13 chr9 31733616 31733694 -86128933 - AluY SINE Alu -19 292 216 207 139 0 0 chr9 31734324 31734360 -86128267 + (TG)n Simple_repeat Simple_repeat 2 37 0 719 269 55 70 chr9 31734447 31734805 -86127822 - LTR16A LTR ERVL -1 456 90 657 349 62 27 chr9 31735462 31735610 -86127017 - ERVL LTR ERVL -808 4956 4815 197 32 0 32 chr9 31735610 31735641 -86126986 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 657 349 62 27 chr9 31735641 31735977 -86126650 - ERVL LTR ERVL -949 4815 4455 22 0 0 0 chr9 31738431 31738453 -86124174 + AT_rich Low_complexity Low_complexity 1 22 0 2228 100 7 0 chr9 31738680 31738980 -86123647 + AluSq SINE Alu 1 302 -11 206 32 32 0 chr9 31738980 31739011 -86123616 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 3400 167 18 10 chr9 31739049 31739677 -86122950 + MER41B LTR ERV1 1 633 -2 257 284 14 27 chr9 31741104 31741178 -86121449 + MLT1I LTR MaLR 98 170 -239 253 305 86 0 chr9 31741481 31741586 -86121041 + MLT1I LTR MaLR 294 407 -2 231 171 14 71 chr9 31741992 31742062 -86120565 - MIR SINE MIR -77 185 120 3115 32 3 0 chr9 31742497 31742875 -86119752 + L1PA2 LINE L1 5777 6155 0 28 48 0 0 chr9 31742875 31742917 -86119710 + AT_rich Low_complexity Low_complexity 1 42 0 26 64 0 0 chr9 31743312 31743359 -86119268 + AT_rich Low_complexity Low_complexity 1 47 0 225 301 106 18 chr9 31743790 31743903 -86118724 + L2 LINE L2 3190 3312 -1 271 353 82 22 chr9 31744440 31744672 -86117955 - L2 LINE L2 -464 2850 2605 29 28 0 0 chr9 31745168 31745204 -86117423 + AT_rich Low_complexity Low_complexity 1 36 0 1631 164 7 18 chr9 31745623 31745904 -86116723 + MSTB LTR MaLR 1 278 -148 1497 182 40 3 chr9 31745958 31746260 -86116367 + MSTB-int LTR MaLR 1 313 -1338 959 193 84 6 chr9 31746262 31746640 -86115987 + MSTA LTR MaLR 2 428 0 6569 217 19 14 chr9 31746642 31746712 -86115915 + MSTB-int LTR MaLR 312 380 -1271 2253 114 0 6 chr9 31746712 31747027 -86115600 + AluSp SINE Alu 1 313 0 6569 217 19 14 chr9 31747027 31748288 -86114339 + MSTB-int LTR MaLR 380 1651 0 2213 172 35 33 chr9 31748288 31748713 -86113914 + MSTB LTR MaLR 1 426 0 910 175 95 136 chr9 31748760 31749245 -86113382 - MER4C LTR ERV1 0 465 1 50 31 0 0 chr9 31750211 31750275 -86112352 + AT_rich Low_complexity Low_complexity 1 64 0 771 241 48 22 chr9 31750625 31750940 -86111687 - L1MDa LINE L1 -3940 2466 2144 1696 236 53 61 chr9 31751040 31752030 -86110597 - L1MDa LINE L1 -4416 1990 827 715 239 74 0 chr9 31752030 31752206 -86110421 - LTR47A LTR ERVL 0 452 264 1763 293 94 31 chr9 31752480 31753257 -86109370 - L1MDa LINE L1 -5578 831 6 1984 113 3 67 chr9 31753721 31754048 -86108579 + AluY SINE Alu 1 306 -5 237 309 0 0 chr9 31755645 31755768 -86106859 + (TA)n Simple_repeat Simple_repeat 2 124 0 189 121 0 0 chr9 31756027 31756060 -86106567 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr9 31756318 31756341 -86106286 + AT_rich Low_complexity Low_complexity 1 23 0 300 321 109 36 chr9 31758070 31758344 -86104283 - L2 LINE L2 -689 2625 2332 35 83 0 0 chr9 31759231 31759315 -86103312 + AT_rich Low_complexity Low_complexity 1 84 0 39 38 0 0 chr9 31759450 31759503 -86103124 + AT_rich Low_complexity Low_complexity 1 53 0 1500 199 86 158 chr9 31759868 31760813 -86101814 - LTR28 LTR ERV1 -1 1019 1 2183 84 0 0 chr9 31761374 31761648 -86100979 + AluSg SINE Alu 1 274 -36 246 32 0 0 chr9 31761654 31761685 -86100942 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 198 103 0 0 chr9 31761854 31761883 -86100744 + (TA)n Simple_repeat Simple_repeat 1 29 0 236 212 15 0 chr9 31762395 31762461 -86100166 + (TATATG)n Simple_repeat Simple_repeat 4 70 0 1905 187 6 2 chr9 31763210 31763557 -86099070 - MER7A DNA MER2_type 0 346 4 23 68 0 0 chr9 31763578 31763622 -86099005 + AT_rich Low_complexity Low_complexity 1 44 0 5644 135 33 3 chr9 31764978 31765854 -86096773 + THE1B-int LTR MaLR 679 1580 0 1798 148 84 26 chr9 31765854 31766198 -86096429 + THE1B LTR MaLR 1 364 0 3682 215 58 25 chr9 31766200 31767725 -86094902 - L1MA5 LINE L1 -309 5991 4420 41363 42 29 1 chr9 31767732 31773697 -86088930 + L1PA4 LINE L1 1 6131 -24 1541 82 0 0 chr9 31773697 31773891 -86088736 + AluY SINE Alu 101 294 -17 2500 153 108 0 chr9 31774707 31775144 -86087483 + MER1A DNA MER1_type 2 485 -44 2249 84 0 13 chr9 31775145 31775456 -86087171 - AluY SINE Alu -4 307 1 29 70 0 0 chr9 31776291 31776348 -86086279 + AT_rich Low_complexity Low_complexity 1 57 0 186 43 0 0 chr9 31776896 31776919 -86085708 + (CCCTAA)n Simple_repeat Simple_repeat 1 23 0 2111 128 0 3 chr9 31777084 31777390 -86085237 + AluSx SINE Alu 1 305 -7 271 310 20 65 chr9 31777551 31777751 -86084876 + HAL1 LINE L1 91 281 -2226 263 289 21 35 chr9 31777752 31777894 -86084733 + HAL1 LINE L1 1238 1377 -1130 2107 107 3 7 chr9 31778019 31778308 -86084319 - AluSg SINE Alu -18 292 5 709 292 4 23 chr9 31778324 31778581 -86084046 + HAL1 LINE L1 1505 1756 -751 * 1258 181 21 60 chr9 31778575 31778906 -86083721 - L1M3 LINE L1 -494 5674 5357 2196 131 0 0 chr9 31778923 31779258 -86083369 - L1PA13 LINE L1 -6 6157 5823 4130 197 13 12 chr9 31779260 31780180 -86082447 + L1P LINE L1 3050 3970 -2176 1540 130 13 0 chr9 31780280 31780518 -86082109 + L1P4 LINE L1 5573 5813 -348 * 1824 246 55 8 chr9 31780511 31780564 -86082063 - L1M3 LINE L1 -772 5374 5325 445 138 43 0 chr9 31780564 31780658 -86081969 - L1PA13 LINE L1 0 6163 6066 1824 246 55 8 chr9 31780658 31781116 -86081511 - L1M3 LINE L1 -821 5325 4839 23 33 0 0 chr9 31782441 31782471 -86080156 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr9 31782582 31782608 -86080019 + AT_rich Low_complexity Low_complexity 1 26 0 323 364 143 24 chr9 31782654 31783110 -86079517 - L2 LINE L2 -841 2473 1964 319 295 14 65 chr9 31783465 31783604 -86079023 - MIR SINE MIR -10 252 121 506 236 9 0 chr9 31784359 31784469 -86078158 - MLT1C LTR MaLR 0 467 357 374 344 71 6 chr9 31784669 31784852 -86077775 + MIR SINE MIR 30 224 -38 26 30 0 0 chr9 31784898 31784931 -86077696 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr9 31785009 31785040 -86077587 + AT_rich Low_complexity Low_complexity 1 31 0 258 339 87 8 chr9 31785922 31786049 -86076578 - L2 LINE L2 -5 3308 3172 974 184 11 0 chr9 31786082 31786261 -86076366 - L1PA16 LINE L1 -124 6042 5862 2748 7 0 0 chr9 31787243 31787546 -86075081 - AluYa5 SINE Alu -8 303 1 27 0 0 0 chr9 31787644 31787671 -86074956 + AT_rich Low_complexity Low_complexity 1 27 0 5202 31 0 0 chr9 31788802 31789414 -86073213 + L1PA4 LINE L1 5536 6147 -8 22 0 0 0 chr9 31789414 31789436 -86073191 + AT_rich Low_complexity Low_complexity 1 22 0 668 248 48 64 chr9 31789452 31789792 -86072835 + L1M1 LINE L1 3007 3340 -4225 300 91 0 0 chr9 31789792 31789836 -86072791 + (TA)n Simple_repeat Simple_repeat 1 44 0 668 248 48 64 chr9 31789836 31789914 -86072713 + L1M1 LINE L1 3340 3418 -4147 6123 242 71 17 chr9 31790017 31793644 -86068983 - L1 LINE L1 -1871 4977 1153 892 319 30 0 chr9 31793887 31794153 -86068474 + LTR40a LTR ERVL 244 517 -2 1606 182 98 6 chr9 31794772 31795107 -86067520 + MLT1B LTR MaLR 20 385 -5 2243 95 7 0 chr9 31795228 31795522 -86067105 + AluSx SINE Alu 1 296 -16 425 254 116 7 chr9 31796605 31796743 -86065884 + MER21B LTR ERV1 19 171 -692 4013 119 5 5 chr9 31796857 31797472 -86065155 - L1PB2 LINE L1 -2 6149 5535 445 139 13 13 chr9 31797472 31797541 -86065086 + L1PA10 LINE L1 6085 6163 -5 1438 97 0 0 chr9 31797549 31797755 -86064872 + L1P5 LINE L1 5315 5520 -631 357 225 136 75 chr9 31797759 31798039 -86064588 - L1MEc LINE L1 -4087 2309 2013 521 288 134 16 chr9 31798253 31798812 -86063815 + L1MC/D LINE L1 5044 5665 -577 197 390 0 0 chr9 31798933 31798992 -86063635 + L2 LINE L2 2986 3044 -228 1009 217 116 31 chr9 31799324 31799651 -86062976 + MLT1A1 LTR MaLR 11 365 0 524 338 89 38 chr9 31800144 31800615 -86062012 + L1M4 LINE L1 3690 4184 -1962 584 218 133 37 chr9 31800710 31801086 -86061541 + L1M4 LINE L1 4297 4708 -1438 347 326 134 11 chr9 31802660 31802847 -86059780 + MIR SINE MIR 48 257 -5 1477 297 87 54 chr9 31804060 31805028 -86057599 + L1MCc LINE L1 727 1661 -5461 222 116 0 0 chr9 31805028 31805071 -86057556 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 1477 297 87 54 chr9 31805071 31805730 -86056897 + L1MCc LINE L1 1661 2630 -4492 1787 172 25 3 chr9 31805730 31806055 -86056572 - MER1B DNA MER1_type -2 335 4 1477 297 87 54 chr9 31806055 31806235 -86056392 + L1MCc LINE L1 2630 2803 -4319 42 36 0 0 chr9 31806376 31806432 -86056195 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chr9 31806463 31806491 -86056136 + AT_rich Low_complexity Low_complexity 1 28 0 942 266 96 25 chr9 31806902 31807446 -86055181 + L1MCc LINE L1 2747 3287 -3654 882 259 38 9 chr9 31807455 31807795 -86054832 + L1M4 LINE L1 4901 5250 -896 5551 147 4 5 chr9 31807799 31808718 -86053909 + L1PB3 LINE L1 3776 4693 -1453 870 139 29 0 chr9 31809266 31809429 -86053198 - L1PB3 LINE L1 -662 5492 5335 3380 156 20 34 chr9 31809429 31809704 -86052923 + L1PB3 LINE L1 5499 5776 -378 2562 37 0 0 chr9 31809704 31810000 -86052627 - AluY SINE Alu -15 296 1 3380 156 20 34 chr9 31810000 31810033 -86052594 + L1PB3 LINE L1 5776 5808 -346 282 56 0 0 chr9 31810033 31810069 -86052558 + (CA)n Simple_repeat Simple_repeat 2 37 0 3380 156 20 34 chr9 31810069 31810406 -86052221 + L1PB3 LINE L1 5808 6141 -13 1891 149 76 15 chr9 31810744 31811087 -86051540 - THE1B LTR MaLR 0 364 1 231 258 41 52 chr9 31811147 31811244 -86051383 + LTR33A LTR ERVL 35 130 -393 435 319 172 4 chr9 31811305 31811537 -86051090 + LTR33A LTR ERVL 253 523 0 21 89 0 0 chr9 31811690 31811746 -86050881 + AT_rich Low_complexity Low_complexity 1 56 0 35 54 0 0 chr9 31812079 31812135 -86050492 + AT_rich Low_complexity Low_complexity 1 56 0 3649 215 32 7 chr9 31812343 31813235 -86049392 + L1 LINE L1 4131 5045 -1101 1222 142 5 0 chr9 31813251 31813463 -86049164 + L1MA7 LINE L1 4536 4748 -1398 * 4526 200 18 16 chr9 31813462 31813883 -86048744 + L1MA7 LINE L1 5069 5488 -803 1902 148 27 30 chr9 31813883 31814248 -86048379 + THE1B LTR MaLR 1 364 0 10928 116 7 0 chr9 31814248 31815817 -86046810 + THE1B-int LTR MaLR 1 1580 0 1981 151 25 25 chr9 31815817 31816181 -86046446 + THE1B LTR MaLR 1 364 0 4526 200 18 16 chr9 31816181 31816948 -86045679 + L1MA7 LINE L1 5487 6264 -27 27 49 0 0 chr9 31816951 31816992 -86045635 + AT_rich Low_complexity Low_complexity 1 41 0 1094 249 105 56 chr9 31817457 31817990 -86044637 + L1ME1 LINE L1 5560 6118 -48 309 287 70 7 chr9 31817890 31818033 -86044594 + L1MA10 LINE L1 6169 6320 -14 * 4160 35 0 0 chr9 31818239 31818747 -86043880 - L1P LINE L1 -1361 4785 4278 520 221 97 10 chr9 31818876 31819071 -86043556 - L1M4 LINE L1 -1571 4575 4364 228 212 30 15 chr9 31819138 31819204 -86043423 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 3756 215 127 88 chr9 31819360 31821048 -86041579 + MER52A LTR ERV1 1 1755 0 1930 101 11 24 chr9 31821150 31821484 -86041143 - AluSx SINE Alu 0 331 2 2318 182 45 2 chr9 31821686 31822202 -86040425 + L1MB3 LINE L1 5643 6180 -3 437 136 0 0 chr9 31822288 31822354 -86040273 + AluS SINE Alu 1 66 -245 21 0 0 0 chr9 31823117 31823138 -86039489 + AT_rich Low_complexity Low_complexity 1 21 0 2274 188 19 0 chr9 31823145 31823609 -86039018 - L1MA4 LINE L1 -16 6284 5812 1102 179 44 0 chr9 31823648 31823947 -86038680 - L1MA4 LINE L1 -743 5403 5189 1089 112 0 10 chr9 31824863 31825141 -86037486 - THE1-int LTR MaLR -751 829 483 243 188 0 0 chr9 31825826 31825874 -86036753 + CT-rich Low_complexity Low_complexity 2 49 0 3565 88 10 0 chr9 31826029 31826518 -86036109 - THE1-int LTR MaLR -1085 495 2 973 320 85 54 chr9 31826617 31827030 -86035597 - HERV16 LTR ERVL -1989 3007 2609 2179 78 0 63 chr9 31827030 31827362 -86035265 - AluY SINE Alu 0 311 1 973 320 85 54 chr9 31827362 31828836 -86033791 - HERV16 LTR ERVL -2387 2609 999 536 222 23 5 chr9 31828866 31829015 -86033612 + L1MC3 LINE L1 7637 7995 0 28 29 0 0 chr9 31829052 31829087 -86033540 + AT_rich Low_complexity Low_complexity 1 35 0 221 164 0 36 chr9 31829939 31829994 -86032633 + (CATA)n Simple_repeat Simple_repeat 2 54 0 209 213 0 0 chr9 31830438 31830485 -86032142 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 327 345 20 7 chr9 31832048 31832196 -86030431 - L1MEc LINE L1 -6041 355 206 22 35 0 0 chr9 31832329 31832358 -86030269 + AT_rich Low_complexity Low_complexity 1 29 0 286 218 78 63 chr9 31832381 31832523 -86030104 - L1MCc LINE L1 -4932 1491 1348 6197 97 13 3 chr9 31833429 31834765 -86027862 + L1PA10 LINE L1 4821 6164 -4 672 235 59 4 chr9 31834785 31835017 -86027610 + L1ME LINE L1 5308 5553 -609 22 0 0 0 chr9 31836242 31836264 -86026363 + AT_rich Low_complexity Low_complexity 1 22 0 7476 30 6 0 chr9 31840747 31842118 -86020509 - L1PA3 LINE L1 -7 6148 4772 17870 36 0 0 chr9 31842118 31844320 -86018307 + L1P LINE L1 1521 3722 -2424 603 314 74 19 chr9 31844792 31845158 -86017469 - L1MEd LINE L1 -5406 713 328 261 204 41 51 chr9 31845428 31845526 -86017101 + L1MC4 LINE L1 6614 6710 -1332 1527 245 20 9 chr9 31845563 31845910 -86016717 - MLT1A1 LTR MaLR -12 353 3 772 224 87 20 chr9 31846945 31847199 -86015428 - LTR37B LTR ERV1 0 468 198 430 247 20 13 chr9 31847433 31847583 -86015044 - L1MA10 LINE L1 -8 6326 6176 339 225 22 11 chr9 31847659 31847748 -86014879 - L1M4 LINE L1 -1210 4936 4847 * 9778 105 14 7 chr9 31847734 31848245 -86014382 + L1P LINE L1 2769 3275 -2871 207 0 0 0 chr9 31848245 31848268 -86014359 + (CA)n Simple_repeat Simple_repeat 2 24 0 9778 105 14 7 chr9 31848268 31849262 -86013365 + L1P LINE L1 3275 4284 -1862 188 111 0 83 chr9 31849398 31849434 -86013193 - L3b LINE CR1 -22 1561 1529 2387 75 0 3 chr9 31849458 31849763 -86012864 + AluY SINE Alu 6 309 -2 24 32 0 0 chr9 31850435 31850466 -86012161 + AT_rich Low_complexity Low_complexity 1 31 0 223 239 0 28 chr9 31850673 31850744 -86011883 + A-rich Low_complexity Low_complexity 5 73 0 389 191 38 0 chr9 31850790 31850971 -86011656 + L1MA4A LINE L1 6032 6280 -23 1498 137 44 15 chr9 31851614 31851885 -86010742 + LTR26 LTR ERV1 9 287 -316 1602 186 11 0 chr9 31851987 31852266 -86010361 + LTR26 LTR ERV1 322 603 0 27 29 0 0 chr9 31852558 31852592 -86010035 + AT_rich Low_complexity Low_complexity 1 34 0 322 223 50 79 chr9 31853757 31853896 -86008731 - L1ME LINE L1 -305 5816 5682 21 0 0 0 chr9 31853902 31853923 -86008704 + AT_rich Low_complexity Low_complexity 1 21 0 400 311 81 35 chr9 31854772 31855134 -86007493 - L1ME LINE L1 -1548 4598 4190 2210 78 0 0 chr9 31855134 31855451 -86007176 + AluY SINE Alu 1 317 0 400 311 81 35 chr9 31855451 31855744 -86006883 - L1ME LINE L1 -1956 4190 3912 * 2779 191 63 22 chr9 31855740 31856240 -86006387 + L1MB2 LINE L1 5164 5707 -464 1965 134 69 29 chr9 31856240 31856590 -86006037 + THE1B LTR MaLR 1 364 0 2779 191 63 22 chr9 31856590 31856847 -86005780 + L1MB2 LINE L1 5707 5952 -219 2864 292 47 94 chr9 31857512 31858187 -86004440 - L1MEc LINE L1 -2093 4551 3846 1282 113 5 0 chr9 31858187 31858373 -86004254 - AluSg/x SINE Alu -1 308 122 2864 292 47 94 chr9 31858373 31859593 -86003034 - L1MEc LINE L1 -2798 3846 2625 383 330 108 35 chr9 31859606 31860060 -86002567 - L1MEc LINE L1 -5981 561 75 22 0 0 0 chr9 31861460 31861482 -86001145 + AT_rich Low_complexity Low_complexity 1 22 0 351 313 74 42 chr9 31861860 31862077 -86000550 + L1MC/D LINE L1 5294 5517 -2291 28 0 0 0 chr9 31862383 31862411 -86000216 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr9 31862465 31862493 -86000134 + AT_rich Low_complexity Low_complexity 1 28 0 359 368 7 7 chr9 31862931 31863067 -85999560 - L2 LINE L2 -469 2845 2710 1311 165 54 17 chr9 31863246 31863543 -85999084 + L1MA7 LINE L1 5984 6291 0 702 286 11 11 chr9 31863548 31863726 -85998901 + MIR SINE MIR 18 195 -67 283 315 310 0 chr9 31863822 31864228 -85998399 - L2 LINE L2 -748 2566 2035 1881 134 3 10 chr9 31864833 31865124 -85997503 - AluSx SINE Alu -20 292 4 209 95 0 24 chr9 31865260 31865302 -85997325 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 240 413 70 0 chr9 31866304 31866546 -85996081 + MIR SINE MIR 3 261 -1 1166 233 56 50 chr9 31867720 31868191 -85994436 - L1MC/D LINE L1 -720 5446 4997 1600 204 28 45 chr9 31868191 31868588 -85994039 + MLT1B LTR MaLR 1 390 0 1166 233 56 50 chr9 31868588 31868772 -85993855 - L1MC/D LINE L1 -1169 4997 4816 924 128 0 0 chr9 31868782 31868923 -85993704 - L1PA16 LINE L1 -3 6163 6023 3848 26 2 0 chr9 31868945 31869398 -85993229 - L1PA3 LINE L1 -5 6150 5697 1347 13 0 0 chr9 31869398 31869549 -85993078 + L1PA3 LINE L1 5528 5678 -477 1272 108 16 0 chr9 31869549 31869735 -85992892 - MER9 LTR ERVK -322 189 1 309 290 40 8 chr9 31870034 31870158 -85992469 + L1ME LINE L1 5345 5472 -692 6214 29 2 2 chr9 31870914 31871889 -85990738 - L1PA3 LINE L1 -149 6006 5032 6263 24 0 0 chr9 31871889 31872633 -85989994 + L1PA3 LINE L1 4317 5060 -1086 277 224 40 0 chr9 31872636 31872712 -85989915 - L1PA16 LINE L1 -137 6029 5951 * 849 239 71 11 chr9 31872706 31872986 -85989641 - L1M4 LINE L1 -1338 4808 4512 22 0 0 0 chr9 31873346 31873368 -85989259 + AT_rich Low_complexity Low_complexity 1 22 0 1167 277 78 8 chr9 31873382 31873765 -85988862 + MER92A LTR ERV1 3 412 0 2223 94 0 3 chr9 31873858 31874155 -85988472 + AluY SINE Alu 1 296 -15 779 237 63 0 chr9 31874690 31874880 -85987747 - MER58 DNA MER1_type -2200 220 19 21 36 0 0 chr9 31874940 31874968 -85987659 + AT_rich Low_complexity Low_complexity 1 28 0 332 240 62 17 chr9 31875057 31875236 -85987391 - MER53 DNA DNA 0 189 3 769 235 34 12 chr9 31875308 31875681 -85986946 - MER114 LTR ERV 0 648 241 483 220 62 40 chr9 31875789 31875966 -85986661 - MER114 LTR ERV -465 183 3 23 0 0 0 chr9 31876190 31876213 -85986414 + AT_rich Low_complexity Low_complexity 1 23 0 215 182 23 0 chr9 31876221 31876265 -85986362 + (TA)n Simple_repeat Simple_repeat 2 46 0 2308 74 3 10 chr9 31876918 31877227 -85985400 - AluY SINE Alu -4 307 1 22 35 0 0 chr9 31877598 31877627 -85985000 + AT_rich Low_complexity Low_complexity 1 29 0 322 301 90 8 chr9 31878006 31878139 -85984488 - MIR SINE MIR -71 191 48 476 286 144 21 chr9 31878388 31879109 -85983518 + L1M4 LINE L1 3813 4622 -1524 291 318 118 20 chr9 31879369 31879564 -85983063 - L2 LINE L2 -929 2385 2172 1503 202 58 21 chr9 31879645 31880021 -85982606 - MLT1B LTR MaLR 0 390 1 350 209 0 19 chr9 31880169 31880274 -85982353 + GA-rich Low_complexity Low_complexity 2 104 0 6054 127 27 32 chr9 31880342 31881419 -85981208 - MER11C LTR ERVK 0 1071 1 1377 149 47 93 chr9 31881753 31882074 -85980553 + AluJb SINE Alu 1 306 -6 239 352 96 32 chr9 31884506 31884725 -85977902 - MIR SINE MIR -10 252 20 896 168 21 11 chr9 31884736 31884926 -85977701 - L1MA6 LINE L1 0 6300 6109 205 310 48 96 chr9 31885679 31885908 -85976719 - L2 LINE L2 -16 3297 3080 631 256 20 10 chr9 31885925 31886120 -85976507 - MER105 DNA DNA -4 200 4 184 364 35 63 chr9 31886125 31886268 -85976359 - L2 LINE L2 -259 3054 2916 205 173 25 49 chr9 31887707 31887788 -85974839 + (TA)n Simple_repeat Simple_repeat 1 79 0 365 281 138 24 chr9 31888689 31888899 -85973728 - HAL1 LINE L1 -590 1917 1684 239 286 138 20 chr9 31888957 31889153 -85973474 - HAL1 LINE L1 -902 1605 1387 386 265 101 69 chr9 31889222 31889360 -85973267 - HAL1 LINE L1 -1223 1284 1152 396 0 0 0 chr9 31889360 31889404 -85973223 + (CA)n Simple_repeat Simple_repeat 2 45 0 386 265 101 69 chr9 31889404 31889682 -85972945 - HAL1 LINE L1 -1355 1152 818 317 129 0 48 chr9 31891311 31891373 -85971254 + L1PA5 LINE L1 6083 6141 -13 380 246 26 73 chr9 31891413 31891604 -85971023 - L2 LINE L2 -36 3277 3096 28 0 0 0 chr9 31892458 31892486 -85970141 + AT_rich Low_complexity Low_complexity 1 28 0 212 389 0 0 chr9 31892824 31892896 -85969731 + L2 LINE L2 3158 3229 -43 691 290 134 45 chr9 31892896 31893502 -85969125 + MLT2F LTR ERVL 1 660 -3 655 285 95 29 chr9 31894522 31894942 -85967685 + L1ME3A LINE L1 5711 6158 -12 658 250 35 6 chr9 31895652 31895824 -85966803 - MER45A DNA AcHobo -1 177 1 1306 267 74 8 chr9 31896212 31896590 -85966037 + MLT2B1 LTR ERVL 83 485 -35 26 74 0 0 chr9 31897741 31897795 -85964832 + AT_rich Low_complexity Low_complexity 1 54 0 454 258 48 8 chr9 31899309 31899433 -85963194 - MIR SINE MIR -86 176 48 21 71 0 0 chr9 31899497 31899539 -85963088 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr9 31899865 31899898 -85962729 + AT_rich Low_complexity Low_complexity 1 33 0 579 323 5 5 chr9 31900384 31900576 -85962051 + MIR SINE MIR 68 259 -3 234 0 0 0 chr9 31901901 31901927 -85960700 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 144 67 122 chr9 31901927 31902017 -85960610 - L1MC4 LINE L1 -1339 6703 6619 324 85 0 0 chr9 31902020 31902067 -85960560 + MADE1 DNA Mariner 33 79 -1 200 311 0 0 chr9 31902067 31902128 -85960499 + (TA)n Simple_repeat Simple_repeat 1 61 0 649 245 15 81 chr9 31902572 31902845 -85959782 + LTR41 LTR ERVL 506 760 -13 1313 330 169 13 chr9 31902859 31903755 -85958872 - L2 LINE L2 -588 2726 1692 1128 215 37 8 chr9 31903762 31904004 -85958623 + MLT1A1 LTR MaLR 113 361 -4 1022 244 30 20 chr9 31904013 31904308 -85958319 + MER89-int LTR ERV1 1361 1658 -5143 1252 92 0 0 chr9 31904364 31904537 -85958090 - AluYa5 SINE Alu -5 306 134 709 185 0 0 chr9 31906478 31906608 -85956019 + AluJb SINE Alu 182 311 -1 251 175 18 0 chr9 31906629 31906686 -85955941 + (TA)n Simple_repeat Simple_repeat 1 58 0 1335 282 144 71 chr9 31906686 31907627 -85955000 - L2 LINE L2 -1612 1702 693 21 36 0 0 chr9 31908705 31908733 -85953894 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr9 31911300 31911331 -85951296 + AT_rich Low_complexity Low_complexity 1 31 0 279 192 0 0 chr9 31911543 31911595 -85951032 + L2 LINE L2 3262 3313 0 22 35 0 0 chr9 31911608 31911637 -85950990 + AT_rich Low_complexity Low_complexity 1 29 0 356 315 24 0 chr9 31912046 31912173 -85950454 - MLT1E1 LTR MaLR -16 533 404 243 0 0 0 chr9 31913435 31913462 -85949165 + (TTG)n Simple_repeat Simple_repeat 1 27 0 9464 44 1 0 chr9 31913662 31914819 -85947808 - L1PA5 LINE L1 -1122 5024 3867 7102 46 5 1 chr9 31914819 31915956 -85946671 + L1PA5 LINE L1 5012 6151 -3 26 0 0 0 chr9 31915956 31915982 -85946645 + AT_rich Low_complexity Low_complexity 1 26 0 231 88 0 0 chr9 31916651 31916685 -85945942 + (TG)n Simple_repeat Simple_repeat 1 34 0 299 171 66 53 chr9 31916725 31916801 -85945826 - L1MCb LINE L1 -5561 484 408 1124 234 48 7 chr9 31916801 31917070 -85945557 - MLT1B LTR MaLR 0 390 111 1241 251 61 15 chr9 31917144 31917589 -85945038 + L1ME LINE L1 1249 1868 -4558 22 0 0 0 chr9 31917607 31917629 -85944998 + AT_rich Low_complexity Low_complexity 1 22 0 1063 203 67 45 chr9 31917664 31917994 -85944633 + L1ME LINE L1 2062 2398 -4028 1164 216 68 85 chr9 31918760 31918924 -85943703 + L1ME LINE L1 5380 5545 -899 228 67 0 0 chr9 31918924 31918954 -85943673 + (CA)n Simple_repeat Simple_repeat 1 30 0 1164 216 68 85 chr9 31918954 31919399 -85943228 + L1ME LINE L1 5545 5976 -468 1268 275 56 29 chr9 31919411 31919855 -85942772 - MLT1E2 LTR MaLR 0 626 171 1589 60 0 0 chr9 31919856 31920056 -85942571 - L1PA8 LINE L1 -576 5596 5397 4076 73 3 28 chr9 31920056 31920146 -85942481 + L1PA8 LINE L1 5596 5687 -485 2066 117 7 13 chr9 31920146 31920446 -85942181 + AluY SINE Alu 1 298 -13 4076 73 3 28 chr9 31920446 31920929 -85941698 + L1PA8 LINE L1 5687 6158 -14 475 294 65 11 chr9 31920936 31921120 -85941507 - MLT1E1 LTR MaLR -404 250 57 286 325 59 44 chr9 31921251 31921539 -85941088 - MLT1G LTR MaLR -1 594 192 1136 208 4 49 chr9 31922087 31922352 -85940275 - MLT1A1 LTR MaLR 0 365 113 473 240 112 0 chr9 31922355 31922480 -85940147 + LTR52-int LTR ERVL 785 923 -2633 192 77 0 0 chr9 31924682 31924708 -85937919 + (A)n Simple_repeat Simple_repeat 1 26 0 1844 287 50 73 chr9 31924751 31925549 -85937078 + LTR52-int LTR ERVL 2246 3025 -531 243 236 9 94 chr9 31925557 31925663 -85936964 - MER76 LTR ERV -193 495 399 1303 230 78 14 chr9 31925663 31926007 -85936620 + LTR52-int LTR ERVL 3140 3505 -51 761 286 114 19 chr9 31926016 31926212 -85936415 + LTR52 LTR ERVL 2 178 -243 336 24 0 0 chr9 31926212 31926253 -85936374 + (CA)n Simple_repeat Simple_repeat 2 42 0 761 286 114 19 chr9 31926253 31926416 -85936211 + LTR52 LTR ERVL 178 395 -26 23 68 0 0 chr9 31926618 31926662 -85935965 + AT_rich Low_complexity Low_complexity 1 44 0 187 427 10 10 chr9 31927995 31928098 -85934529 + L2 LINE L2 3192 3294 -19 25 65 0 0 chr9 31928179 31928225 -85934402 + AT_rich Low_complexity Low_complexity 1 46 0 448 164 0 0 chr9 31928337 31928404 -85934223 + Tigger2 DNA MER2_type 1 67 -2651 * 2344 166 58 2 chr9 31928390 31928817 -85933810 + Tigger2 DNA MER2_type 2267 2717 -1 220 292 14 14 chr9 31929000 31929072 -85933555 + MIR3 SINE MIR 97 168 -40 576 240 27 27 chr9 31929206 31929352 -85933275 + MER58B DNA MER1_type 189 334 -7 297 0 0 0 chr9 31930310 31930343 -85932284 + (TG)n Simple_repeat Simple_repeat 2 34 0 1402 199 79 8 chr9 31930794 31931175 -85931452 - L1MA9 LINE L1 0 6312 5905 1889 182 120 5 chr9 31931183 31931567 -85931060 - MSTA LTR MaLR 0 428 1 219 36 0 0 chr9 31932913 31932941 -85929686 + (GA)n Simple_repeat Simple_repeat 1 28 0 2018 105 3 18 chr9 31933100 31933410 -85929217 + AluSx SINE Alu 1 306 0 4793 184 21 21 chr9 31933452 31934974 -85927653 - L1PA16 LINE L1 -1 6165 4643 615 139 0 0 chr9 31934979 31935080 -85927547 + MER57A-int LTR ERV1 7437 7537 0 2262 169 10 0 chr9 31935082 31935479 -85927148 + MER57A LTR ERV1 3 403 0 36 0 0 0 chr9 31936154 31936190 -85926437 + AT_rich Low_complexity Low_complexity 1 36 0 645 178 30 0 chr9 31936230 31936365 -85926262 + L1ME3 LINE L1 42 180 -6243 409 326 77 0 chr9 31936501 31936697 -85925930 + L1ME3 LINE L1 2684 2894 -4228 1380 195 37 45 chr9 31936729 31937107 -85925520 + L1MA8 LINE L1 5926 6291 0 611 292 105 16 chr9 31937119 31937567 -85925060 + L1ME3 LINE L1 2916 3403 -3538 469 215 30 15 chr9 31937597 31937732 -85924895 + L1ME2 LINE L1 5398 5534 -628 322 273 187 0 chr9 31937783 31937922 -85924705 + L1ME2 LINE L1 6000 6164 0 276 30 0 0 chr9 31938399 31938432 -85924195 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr9 31938491 31938512 -85924115 + (TATAA)n Simple_repeat Simple_repeat 5 25 0 183 282 42 14 chr9 31938753 31938824 -85923803 + L2 LINE L2 3226 3298 -15 22 0 0 0 chr9 31939269 31939291 -85923336 + AT_rich Low_complexity Low_complexity 1 22 0 532 183 0 0 chr9 31939308 31939412 -85923215 - L1PA16 LINE L1 -2 6164 6061 260 291 42 21 chr9 31940202 31940391 -85922236 + L1ME3 LINE L1 3837 4029 -2912 369 216 0 0 chr9 31940560 31940648 -85921979 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 1976 114 60 6 chr9 31940988 31941305 -85921322 - MER9 LTR ERVK 0 511 178 3880 24 2 0 chr9 31941311 31941769 -85920858 - L1PA2 LINE L1 0 6155 5697 1347 13 0 0 chr9 31941769 31941920 -85920707 + L1PA2 LINE L1 5528 5678 -477 1283 102 16 0 chr9 31941920 31942106 -85920521 - MER9 LTR ERVK -322 189 1 309 290 40 8 chr9 31942405 31942529 -85920098 + L1ME LINE L1 5345 5472 -690 1025 309 86 27 chr9 31942870 31943347 -85919280 + L1ME3 LINE L1 5759 6206 -751 333 0 0 0 chr9 31943347 31943384 -85919243 + (CA)n Simple_repeat Simple_repeat 2 38 0 1025 309 86 27 chr9 31943384 31943946 -85918681 + L1ME3 LINE L1 6206 6869 -88 594 324 152 3 chr9 31944032 31944362 -85918265 - L2 LINE L2 -698 2616 2238 26 0 0 0 chr9 31944543 31944569 -85918058 + AT_rich Low_complexity Low_complexity 1 26 0 219 69 0 0 chr9 31944667 31944696 -85917931 + (TA)n Simple_repeat Simple_repeat 2 30 0 487 230 22 7 chr9 31945136 31945275 -85917352 - Charlie1 DNA MER1_type -1 2760 2620 * 849 270 35 0 chr9 31945257 31945487 -85917140 - Charlie1 DNA MER1_type -2522 239 2 390 298 136 14 chr9 31945609 31945888 -85916739 + L1M4 LINE L1 3048 3360 -2786 1417 191 0 52 chr9 31947056 31947344 -85915283 + MER44D DNA MER2_type 156 483 -122 458 240 0 40 chr9 31947427 31947474 -85915153 + MER44D DNA MER2_type 489 536 -1955 381 43 0 0 chr9 31947474 31947521 -85915106 + (CA)n Simple_repeat Simple_repeat 2 48 0 458 240 0 40 chr9 31947521 31947598 -85915029 + MER44D DNA MER2_type 536 608 -1 2009 270 26 64 chr9 31948782 31949474 -85913153 - L1M3e LINE L1 -6358 672 7 276 111 0 0 chr9 31949519 31949564 -85913063 + (TG)n Simple_repeat Simple_repeat 2 46 0 881 283 26 29 chr9 31949569 31949915 -85912712 - L1ME LINE L1 -492 6467 6123 457 264 62 0 chr9 31949968 31950146 -85912481 - L1ME LINE L1 -1310 5631 5443 954 301 96 25 chr9 31950358 31950602 -85912025 - MER90 LTR ERV1 -79 535 310 2050 169 88 8 chr9 31950602 31950998 -85911629 - MSTA LTR MaLR 0 428 1 954 301 96 25 chr9 31950998 31951241 -85911386 - MER90 LTR ERV1 -304 310 13 375 278 71 30 chr9 31951260 31951429 -85911198 - L1ME LINE L1 -4720 2221 2046 378 0 0 0 chr9 31951432 31951474 -85911153 + (TG)n Simple_repeat Simple_repeat 2 43 0 3172 171 13 20 chr9 31951483 31952081 -85910546 - L1PA16 LINE L1 -14 6152 5559 1375 182 0 0 chr9 31952081 31952317 -85910310 + L1PA16 LINE L1 5323 5558 -607 390 295 69 34 chr9 31952348 31952622 -85910005 - L1MDb LINE L1 -5036 1908 1544 435 333 92 11 chr9 31952629 31952998 -85909629 - L1MDb LINE L1 -4897 1526 1128 318 290 56 37 chr9 31953518 31953787 -85908840 - L1MDb LINE L1 -6131 292 19 21 0 0 0 chr9 31953968 31953989 -85908638 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr9 31954074 31954104 -85908523 + AT_rich Low_complexity Low_complexity 1 30 0 678 269 76 59 chr9 31954426 31955084 -85907543 - L1ME LINE L1 -4649 1914 1246 254 370 65 0 chr9 31955099 31955207 -85907420 - L2 LINE L2 -263 3050 2936 15522 189 29 24 chr9 31955228 31955380 -85907247 + L1M1 LINE L1 13 163 -7402 2331 95 0 6 chr9 31955380 31955695 -85906932 - AluSq SINE Alu 0 313 1 15522 189 29 24 chr9 31955695 31958593 -85904034 + L1M1 LINE L1 163 3077 -4488 3305 142 25 20 chr9 31958597 31959204 -85903423 + L1MA2 LINE L1 5695 6304 0 339 189 52 7 chr9 31959847 31960000 -85902627 + (TA)n Simple_repeat Simple_repeat 2 161 0 523 346 43 31 chr9 31960550 31960874 -85901753 - HERVL LTR ERVL -1124 4530 4203 431 305 119 31 chr9 31960909 31961343 -85901284 - L1ME LINE L1 -5018 1354 945 343 265 0 12 chr9 31962260 31962343 -85900284 + MLT1H LTR MaLR 146 227 -322 24 32 0 0 chr9 31962542 31962573 -85900054 + AT_rich Low_complexity Low_complexity 1 31 0 27 81 0 0 chr9 31962903 31962965 -85899662 + AT_rich Low_complexity Low_complexity 1 62 0 1307 224 6 74 chr9 31963468 31963820 -85898807 + MLT2D LTR ERVL 5 332 -82 21 71 0 0 chr9 31963985 31964027 -85898600 + AT_rich Low_complexity Low_complexity 1 42 0 34 0 0 0 chr9 31964108 31964142 -85898485 + AT_rich Low_complexity Low_complexity 1 34 0 2944 207 34 68 chr9 31965684 31966356 -85896271 - LTR1B LTR ERV1 0 826 188 2266 78 0 0 chr9 31966356 31966639 -85895988 - AluSc SINE Alu -26 283 1 2944 207 34 68 chr9 31966639 31966821 -85895806 - LTR1B LTR ERV1 -638 188 1 645 324 50 55 chr9 31967043 31967518 -85895109 + MLT1K LTR MaLR 104 576 -12 22 0 0 0 chr9 31967698 31967720 -85894907 + AT_rich Low_complexity Low_complexity 1 22 0 307 278 83 0 chr9 31968717 31968825 -85893802 + L2 LINE L2 3197 3313 0 4736 190 50 21 chr9 31970420 31972345 -85890282 - L1MA4A LINE L1 0 7365 5390 795 251 48 116 chr9 31972348 31972850 -85889777 - MER66A LTR ERV1 -10 468 1 3521 202 16 8 chr9 31972850 31973611 -85889016 - L1MA4A LINE L1 -1813 5395 4629 593 149 6 28 chr9 31973622 31973768 -85888859 + (TA)n Simple_repeat Simple_repeat 2 145 -33 2048 140 45 28 chr9 31973768 31974124 -85888503 + THE1B LTR MaLR 3 364 0 593 149 6 28 chr9 31974124 31974158 -85888469 + (TA)n Simple_repeat Simple_repeat 145 178 0 422 179 0 0 chr9 31974235 31974302 -85888325 - MER66A LTR ERV1 -10 468 402 306 0 0 0 chr9 31974335 31974369 -85888258 + (TA)n Simple_repeat Simple_repeat 1 34 0 323 161 0 12 chr9 31974483 31974564 -85888063 + (TA)n Simple_repeat Simple_repeat 2 81 0 6073 219 45 35 chr9 31974604 31977940 -85884687 - L1MA4A LINE L1 -2589 4619 689 245 290 161 0 chr9 31979859 31979952 -85882675 - L1ME LINE L1 -537 5584 5477 25 51 0 0 chr9 31980059 31980098 -85882529 + AT_rich Low_complexity Low_complexity 1 39 0 345 296 142 28 chr9 31980413 31980737 -85881890 - L1ME LINE L1 -1440 4706 4346 40 67 0 0 chr9 31980790 31980865 -85881762 + AT_rich Low_complexity Low_complexity 1 75 0 204 97 0 0 chr9 31982651 31982682 -85879945 + (CAT)n Simple_repeat Simple_repeat 3 33 0 759 152 22 60 chr9 31983031 31983215 -85879412 - L1MA8 LINE L1 -3 6288 6112 1076 206 12 16 chr9 31983224 31983471 -85879156 + L1 LINE L1 3663 3908 -2238 920 102 0 38 chr9 31984594 31984780 -85877847 + (TA)n Simple_repeat Simple_repeat 2 180 0 225 0 0 0 chr9 31984790 31984815 -85877812 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 284 339 45 9 chr9 31985388 31985500 -85877127 - L2 LINE L2 -2 3311 3196 22 0 0 0 chr9 31985743 31985765 -85876862 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr9 31986649 31986678 -85875949 + (TA)n Simple_repeat Simple_repeat 1 29 0 2574 185 43 29 chr9 31986781 31987359 -85875268 - LTR9B LTR ERV1 -52 592 7 21 0 0 0 chr9 31988363 31988384 -85874243 + AT_rich Low_complexity Low_complexity 1 21 0 1579 222 109 2 chr9 31988628 31989033 -85873594 + L1ME2 LINE L1 5438 5885 -279 6050 113 47 64 chr9 31989145 31989270 -85873357 + HUERS-P3 LTR ERV1 7889 8015 -904 209 271 0 68 chr9 31989270 31989329 -85873298 + MER5A DNA MER1_type 1 55 -134 6050 113 47 64 chr9 31989329 31989346 -85873281 + HUERS-P3 LTR ERV1 8015 8031 -888 2190 107 0 19 chr9 31989346 31989654 -85872973 - AluSg SINE Alu -8 302 1 6050 113 47 64 chr9 31989654 31990501 -85872126 + HUERS-P3 LTR ERV1 8031 8919 0 2546 189 19 68 chr9 31990501 31991145 -85871482 + LTR9 LTR ERV1 1 612 0 881 174 34 11 chr9 31991145 31991323 -85871304 - L1M4 LINE L1 -477 5707 5526 2077 75 4 11 chr9 31991890 31992158 -85870469 + AluSx SINE Alu 31 296 -16 263 229 36 6 chr9 31992600 31992766 -85869861 + (TA)n Simple_repeat Simple_repeat 2 172 0 22 0 0 0 chr9 31992770 31992792 -85869835 + AT_rich Low_complexity Low_complexity 1 22 0 2664 36 0 3 chr9 31992797 31993102 -85869525 + AluY SINE Alu 2 305 -6 2067 114 36 18 chr9 31993260 31993314 -85869313 - MLT2A1 LTR ERVL 0 444 392 308 102 0 17 chr9 31993314 31993373 -85869254 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2067 114 36 18 chr9 31993373 31993652 -85868975 - MLT2A1 LTR ERVL -52 392 105 826 333 89 24 chr9 31993842 31994214 -85868413 - LTR16C LTR ERVL -6 485 90 1099 256 62 6 chr9 31994326 31994688 -85867939 + L1ME LINE L1 5237 5618 -552 186 133 0 0 chr9 31995113 31995143 -85867484 + (TTTC)n Simple_repeat Simple_repeat 1 30 0 2118 124 12 0 chr9 31995941 31996263 -85866364 + MLT1B LTR MaLR 61 386 -4 230 300 0 0 chr9 31996837 31996897 -85865730 + (TG)n Simple_repeat Simple_repeat 2 61 0 1922 139 0 17 chr9 31998173 31998475 -85864152 - AluSx SINE Alu -3 309 13 192 77 0 0 chr9 31998519 31998545 -85864082 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 253 254 315 22 chr9 31999599 31999780 -85862847 - MIR SINE MIR -14 248 15 562 304 119 29 chr9 31999894 32000437 -85862190 - L1ME4a LINE L1 -266 5855 5277 228 364 45 9 chr9 32000587 32000697 -85861930 - L2 LINE L2 -648 2666 2553 295 350 43 21 chr9 32000709 32000895 -85861732 - L2 LINE L2 -1285 2029 1840 213 292 99 109 chr9 32001181 32001373 -85861254 + L2 LINE L2 2632 2821 -493 1621 179 3 30 chr9 32001919 32002216 -85860411 + AluJo SINE Alu 1 289 -23 334 303 126 11 chr9 32002506 32002681 -85859946 - MIR SINE MIR -4 258 64 1505 192 8 142 chr9 32002956 32003435 -85859192 + L1MD2 LINE L1 5309 5723 -636 332 188 18 170 chr9 32003536 32003701 -85858926 + L1MD2 LINE L1 6081 6335 -22 344 259 108 76 chr9 32003868 32004053 -85858574 + MIR3 SINE MIR 8 198 -10 260 257 76 29 chr9 32004399 32004504 -85858123 + MIR SINE MIR 59 168 -94 1557 192 76 21 chr9 32004943 32005324 -85857303 - LTR52 LTR ERVL -2 419 18 267 213 0 0 chr9 32005697 32005758 -85856869 - MLT2A1 LTR ERVL -149 295 235 218 351 191 31 chr9 32005895 32006340 -85856287 - L2 LINE L2 -646 2668 2153 240 174 22 0 chr9 32006539 32006585 -85856042 - Tigger4(Zombi) DNA MER2_type 0 2731 2685 1301 238 4 0 chr9 32006587 32006864 -85855763 + AluJb SINE Alu 13 290 -22 342 196 236 0 chr9 32006881 32007029 -85855598 - Tigger4(Zombi) DNA MER2_type -43 2688 2506 263 308 88 50 chr9 32007213 32007395 -85855232 + MLT1J2 LTR MaLR 256 444 -6 217 267 107 61 chr9 32007817 32007948 -85854679 + L2 LINE L2 2456 2592 -722 263 329 102 0 chr9 32008002 32008139 -85854488 + L2 LINE L2 2862 3012 -260 1064 281 58 32 chr9 32008391 32008990 -85853637 + HAL1 LINE L1 1150 1764 -743 425 267 75 80 chr9 32009282 32009741 -85852886 + L1ME2 LINE L1 4588 5026 -1200 1910 140 0 34 chr9 32009741 32010060 -85852567 + AluSx SINE Alu 1 309 0 425 267 75 80 chr9 32010060 32010512 -85852115 + L1ME2 LINE L1 5026 5479 -747 28 71 0 0 chr9 32010562 32010618 -85852009 + AT_rich Low_complexity Low_complexity 1 56 0 2132 126 3 0 chr9 32010629 32010922 -85851705 - AluSq SINE Alu -19 294 1 233 204 82 41 chr9 32010957 32011055 -85851572 + L1ME2 LINE L1 5538 5639 -482 2480 58 0 6 chr9 32011173 32011503 -85851124 + L1P LINE L1 3735 4062 -2084 5010 122 38 40 chr9 32011503 32012402 -85850225 - MER11D LTR ERVK 0 897 1 9442 91 27 1 chr9 32012402 32013979 -85848648 + L1P4 LINE L1 4057 5681 -493 730 254 30 57 chr9 32014269 32014603 -85848024 + L1ME2 LINE L1 5839 6163 -1 2288 101 13 0 chr9 32016853 32017161 -85845466 - AluSx SINE Alu 0 312 1 23 0 0 0 chr9 32017251 32017274 -85845353 + AT_rich Low_complexity Low_complexity 1 23 0 210 71 0 0 chr9 32017662 32017690 -85844937 + (TTA)n Simple_repeat Simple_repeat 1 28 0 520 252 34 63 chr9 32018380 32018586 -85844041 - L1MC4 LINE L1 -1170 6872 6673 236 307 43 49 chr9 32018827 32018990 -85843637 - L1M4 LINE L1 -1999 4147 3986 4921 157 12 26 chr9 32019055 32019112 -85843515 - L1MA4 LINE L1 0 6300 6244 2253 109 0 0 chr9 32019112 32019416 -85843211 - AluSq SINE Alu -9 304 1 4921 157 12 26 chr9 32019416 32020321 -85842306 - L1MA4 LINE L1 -56 6244 5351 979 291 94 26 chr9 32020339 32021614 -85841013 - L1M4 LINE L1 -2316 3830 2469 359 355 15 21 chr9 32021863 32022012 -85840615 - MIR3 SINE MIR -40 168 19 3968 210 45 18 chr9 32022245 32023084 -85839543 + MER21B LTR ERV1 1 862 -1 240 211 0 0 chr9 32023958 32024029 -85838598 + CT-rich Low_complexity Low_complexity 2 72 0 218 81 27 0 chr9 32024381 32024418 -85838209 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 281 192 20 26 chr9 32025169 32025252 -85837375 + MLT1G LTR MaLR 464 590 0 180 0 0 0 chr9 32025283 32025303 -85837324 + (CAAAAA)n Simple_repeat Simple_repeat 5 24 0 290 323 45 0 chr9 32026104 32026237 -85836390 + L1ME2 LINE L1 5452 5590 -574 2449 117 3 0 chr9 32026251 32026603 -85836024 - THE1A LTR MaLR 0 355 3 10887 109 29 5 chr9 32026610 32028147 -85834480 - THE1A-int LTR MaLR -6 1574 1 1722 69 0 2 chr9 32028147 32028436 -85834191 - THE1A LTR MaLR 0 355 1 758 257 66 68 chr9 32028438 32028862 -85833765 + L1ME2 LINE L1 5601 6023 -141 804 57 24 0 chr9 32028906 32029029 -85833598 + (TAGA)n Simple_repeat Simple_repeat 4 129 0 377 315 66 69 chr9 32029078 32029383 -85833244 + L1ME LINE L1 1368 1671 -4869 1077 281 68 5 chr9 32029594 32029969 -85832658 + L1ME LINE L1 5708 6117 -441 1828 73 0 12 chr9 32029969 32030215 -85832412 - L1PA8 LINE L1 -6 6166 5924 1077 281 68 5 chr9 32030215 32030283 -85832344 + L1ME LINE L1 6117 6179 -379 29 47 0 0 chr9 32030416 32030459 -85832168 + AT_rich Low_complexity Low_complexity 1 43 0 247 369 46 8 chr9 32030541 32030671 -85831956 - L2 LINE L2 0 3313 3179 281 346 171 26 chr9 32034099 32034590 -85828037 + L2 LINE L2 1000 1561 -1753 349 278 19 49 chr9 32034883 32034958 -85827669 + LTR43 LTR ERV1 135 211 -391 3839 131 18 5 chr9 32034958 32035559 -85827068 - MER4B LTR ERV1 0 610 2 349 278 19 49 chr9 32035559 32035645 -85826982 + LTR43 LTR ERV1 211 291 -311 260 296 69 94 chr9 32036143 32036252 -85826375 - MIR SINE MIR -18 244 141 3230 139 11 19 chr9 32036252 32036783 -85825844 - MER1A DNA MER1_type 0 527 1 260 296 69 94 chr9 32036783 32036876 -85825751 - MIR SINE MIR -121 141 47 25 75 0 0 chr9 32037511 32037564 -85825063 + AT_rich Low_complexity Low_complexity 1 53 0 1610 199 38 0 chr9 32037570 32037862 -85824765 - AluJo SINE Alu -8 304 2 233 196 36 0 chr9 32038582 32038638 -85823989 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 189 411 11 0 chr9 32039861 32039951 -85822676 + L2 LINE L2 3180 3270 -2 229 283 0 0 chr9 32040270 32040330 -85822297 + (TATATG)n Simple_repeat Simple_repeat 1 60 0 213 39 0 0 chr9 32040607 32040633 -85821994 + (GA)n Simple_repeat Simple_repeat 1 26 0 5431 176 29 18 chr9 32040671 32041734 -85820893 - L1MC1 LINE L1 0 6333 5255 309 291 71 0 chr9 32041980 32042107 -85820520 + MER69 DNA AcHobo 433 568 -1958 883 255 139 19 chr9 32042127 32042543 -85820084 + MER69 DNA AcHobo 2035 2500 -26 217 274 151 0 chr9 32044834 32044907 -85817720 - L2 LINE L2 0 3313 3230 1575 329 137 18 chr9 32045025 32046072 -85816555 - L2 LINE L2 -259 3054 1876 355 265 54 48 chr9 32046110 32046257 -85816370 - MLT1H LTR MaLR -399 150 3 1652 238 35 42 chr9 32046311 32046829 -85815798 + L1ME1 LINE L1 5388 5901 -265 573 236 51 19 chr9 32046934 32047091 -85815536 + L1ME1 LINE L1 5871 6032 -134 237 264 72 24 chr9 32047221 32047346 -85815281 + L1M4 LINE L1 3326 3456 -2690 197 65 32 0 chr9 32048736 32048767 -85813860 + (GAAAA)n Simple_repeat Simple_repeat 2 33 0 582 288 55 64 chr9 32048767 32049583 -85813044 + L1M4 LINE L1 3437 4245 -1901 2617 181 7 44 chr9 32049638 32050206 -85812421 - MER44D DNA MER2_type 0 605 4 306 331 59 35 chr9 32050961 32051130 -85811497 + MLT1I LTR MaLR 74 246 -163 26 30 0 0 chr9 32052137 32052170 -85810457 + AT_rich Low_complexity Low_complexity 1 33 0 234 319 28 0 chr9 32052492 32052564 -85810063 - MIR SINE MIR -133 129 56 23 0 0 0 chr9 32053220 32053243 -85809384 + AT_rich Low_complexity Low_complexity 1 23 0 459 317 55 0 chr9 32053650 32053814 -85808813 - MIR SINE MIR 0 262 90 1481 216 14 11 chr9 32054497 32054784 -85807843 - LTR57 LTR ERVL -42 369 82 456 239 60 0 chr9 32054804 32054938 -85807689 + L1MA7 LINE L1 6147 6288 -3 22 56 0 0 chr9 32054938 32054974 -85807653 + AT_rich Low_complexity Low_complexity 1 36 0 43122 46 2 1 chr9 32056943 32063096 -85799531 + L1PA3 LINE L1 1 6155 0 315 148 26 3 chr9 32063366 32063423 -85799204 - L1MA1 LINE L1 -156 6146 6082 576 126 0 21 chr9 32063423 32063501 -85799126 + L1MA3 LINE L1 6203 6295 -10 315 148 26 3 chr9 32063501 32063518 -85799109 - L1MA1 LINE L1 -220 6082 6067 281 291 74 29 chr9 32063905 32064080 -85798547 + L1ME LINE L1 5598 5780 -341 31 0 0 0 chr9 32064876 32064907 -85797720 + AT_rich Low_complexity Low_complexity 1 31 0 956 265 133 88 chr9 32065657 32065976 -85796651 + MLT1E LTR MaLR 1 357 -236 260 27 27 0 chr9 32065976 32066013 -85796614 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 956 265 133 88 chr9 32066013 32066259 -85796368 + MLT1E LTR MaLR 357 591 -2 2293 75 3 3 chr9 32067097 32067405 -85795222 + AluSx SINE Alu 5 312 0 21 36 0 0 chr9 32067405 32067433 -85795194 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr9 32067744 32067787 -85794840 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr9 32067897 32067932 -85794695 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr9 32068159 32068195 -85794432 + AT_rich Low_complexity Low_complexity 1 36 0 742 286 108 25 chr9 32068414 32068813 -85793814 + MLT1J1 LTR MaLR 1 432 -14 28 0 0 0 chr9 32069148 32069176 -85793451 + AT_rich Low_complexity Low_complexity 1 28 0 1204 186 17 24 chr9 32069724 32070020 -85792607 - L1MA9 LINE L1 0 6312 6019 4742 185 23 26 chr9 32070060 32071385 -85791242 - L1MA9 LINE L1 -515 5776 4457 623 313 155 34 chr9 32072653 32073091 -85789536 + L2 LINE L2 2823 3313 0 238 189 54 72 chr9 32074761 32074872 -85787755 - L1M4 LINE L1 -2160 3986 3878 252 329 105 49 chr9 32074928 32075253 -85787374 + L1ME3A LINE L1 5594 5936 -234 21 95 0 0 chr9 32075474 32075537 -85787090 + AT_rich Low_complexity Low_complexity 1 63 0 333 253 0 33 chr9 32075714 32075805 -85786822 + L2 LINE L2 3182 3269 -3 611 63 0 0 chr9 32076994 32077073 -85785554 - MADE1 DNA Mariner -1 79 1 24 32 0 0 chr9 32077850 32077881 -85784746 + AT_rich Low_complexity Low_complexity 1 31 0 447 323 82 32 chr9 32078192 32078471 -85784156 + LTR16C LTR ERVL 188 480 -11 2401 179 100 26 chr9 32078549 32079079 -85783548 - MER101B LTR ERV1 -1 569 1 276 259 82 52 chr9 32079205 32079340 -85783287 + L2 LINE L2 2897 3035 -237 27 62 0 0 chr9 32079568 32079616 -85783011 + AT_rich Low_complexity Low_complexity 1 48 0 183 186 0 0 chr9 32079962 32080005 -85782622 + (TG)n Simple_repeat Simple_repeat 1 43 0 763 288 23 0 chr9 32081280 32081499 -85781128 + MER58A DNA MER1_type 1 224 0 1073 153 86 10 chr9 32081537 32081746 -85780881 - MSTA LTR MaLR -203 225 1 1137 213 66 41 chr9 32081751 32082317 -85780310 + L1M1 LINE L1 3210 3787 -3778 * 1747 203 44 5 chr9 32082308 32082692 -85779935 + L1M1 LINE L1 5258 5656 -1909 21 0 0 0 chr9 32084015 32084036 -85778591 + AT_rich Low_complexity Low_complexity 1 21 0 309 240 177 0 chr9 32084515 32084611 -85778016 + L1ME LINE L1 5486 5598 -568 285 316 66 26 chr9 32086939 32087091 -85775536 + MIR SINE MIR 105 262 0 189 147 0 0 chr9 32087121 32087155 -85775472 + (TAG)n Simple_repeat Simple_repeat 2 35 0 793 248 92 50 chr9 32087201 32087604 -85775023 + LTR52 LTR ERVL 2 421 0 1421 286 69 15 chr9 32087612 32088091 -85774536 + LTR52-int LTR ERVL 2 506 -3050 206 310 0 0 chr9 32088091 32088162 -85774465 + A-rich Low_complexity Low_complexity 1 71 0 1193 209 24 37 chr9 32088469 32088757 -85773870 - MLT2B3 LTR ERVL -5 549 266 6533 184 62 65 chr9 32088757 32090406 -85772221 + MER52A LTR ERV1 1 1755 0 976 210 25 22 chr9 32090441 32090701 -85771926 - MLT2B3 LTR ERVL -201 252 1 352 164 0 0 chr9 32090973 32091034 -85771593 + LTR52-int LTR ERVL 3496 3556 0 648 280 103 45 chr9 32091036 32091432 -85771195 + LTR52 LTR ERVL 3 421 0 258 232 34 45 chr9 32091843 32092020 -85770607 + (TA)n Simple_repeat Simple_repeat 1 175 0 22 56 0 0 chr9 32093038 32093074 -85769553 + AT_rich Low_complexity Low_complexity 1 36 0 192 323 129 26 chr9 32093515 32093670 -85768957 + MIR SINE MIR 78 248 -14 29 28 0 0 chr9 32093714 32093750 -85768877 + AT_rich Low_complexity Low_complexity 1 36 0 260 295 95 0 chr9 32094276 32094371 -85768256 + MLT1I LTR MaLR 252 355 -54 6749 236 45 32 chr9 32094577 32095110 -85767517 - L1MC1 LINE L1 0 7144 6619 2350 49 0 0 chr9 32095110 32095420 -85767207 + AluY SINE Alu 1 310 0 6749 236 45 32 chr9 32095420 32098198 -85764429 - L1MC1 LINE L1 -525 6619 3690 1992 148 101 3 chr9 32098202 32098567 -85764060 - L1PA16 LINE L1 -22 6144 5744 325 150 30 158 chr9 32098549 32098603 -85764024 + L1P4 LINE L1 5632 5661 -505 * 1565 187 17 23 chr9 32098603 32098903 -85763724 + AluJb SINE Alu 2 299 -13 325 150 30 158 chr9 32098903 32098981 -85763646 + L1P4 LINE L1 5661 5747 -419 * 1615 272 51 23 chr9 32098974 32099755 -85762872 - L1MC1 LINE L1 -3254 3703 2939 358 286 71 8 chr9 32100235 32100353 -85762274 - MLT1J LTR MaLR -287 198 42 22 0 0 0 chr9 32100843 32100865 -85761762 + AT_rich Low_complexity Low_complexity 1 22 0 1402 246 62 74 chr9 32101172 32102035 -85760592 - L1MC1 LINE L1 -4767 2192 1343 223 146 100 0 chr9 32102058 32102168 -85760459 + (TA)n Simple_repeat Simple_repeat 2 122 0 341 253 100 53 chr9 32102171 32102321 -85760306 - L1MC1 LINE L1 -5499 1360 1204 1452 330 62 17 chr9 32102906 32103487 -85759140 - L1MC1 LINE L1 -5980 879 273 1321 237 30 25 chr9 32103490 32103857 -85758770 - MLT1A2 LTR MaLR 0 374 6 1940 230 38 2 chr9 32103862 32104280 -85758347 - MLT1A2-int LTR MaLR 0 1735 1303 235 224 0 92 chr9 32104281 32104357 -85758270 + MLT-int LTR MaLR 943 1011 -724 27 0 0 0 chr9 32105530 32105557 -85757070 + AT_rich Low_complexity Low_complexity 1 27 0 2345 60 0 0 chr9 32105601 32105920 -85756707 - AluY SINE Alu 0 319 1 229 250 50 0 chr9 32106108 32106168 -85756459 + MLT1J1 LTR MaLR 269 331 -115 557 320 73 43 chr9 32106530 32107090 -85755537 + L1M4 LINE L1 57 633 -5909 1771 351 79 23 chr9 32107594 32108742 -85753885 + L2 LINE L2 1790 2998 -315 257 385 0 56 chr9 32108781 32108976 -85753651 + MER5A DNA MER1_type 6 189 0 23 33 0 0 chr9 32109192 32109222 -85753405 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr9 32111042 32111072 -85751555 + AT_rich Low_complexity Low_complexity 1 30 0 2123 139 12 14 chr9 32111196 32111540 -85751087 + MER61A LTR ERV1 1 343 0 2710 189 74 104 chr9 32111540 32112341 -85750286 + MER61A-int LTR ERV1 1 777 -4440 * 3219 111 18 14 chr9 32112334 32112883 -85749744 + MER61A-int LTR ERV1 1320 1917 -3300 * 16559 101 10 13 chr9 32112879 32115580 -85747047 + MER61A-int LTR ERV1 2477 5215 -2 2106 142 30 0 chr9 32115584 32115915 -85746712 + MER61A LTR ERV1 3 343 0 7578 25 3 0 chr9 32117011 32118145 -85744482 - L1PA5 LINE L1 -6 6148 5012 3066 40 3 0 chr9 32118145 32118517 -85744110 + L1P LINE L1 3867 4239 -1907 399 303 32 32 chr9 32118524 32118679 -85743948 - MIR SINE MIR -74 188 34 203 414 19 19 chr9 32120573 32120730 -85741897 + L2 LINE L2 2896 3052 -261 433 124 11 11 chr9 32120916 32121005 -85741622 + (TGGA)n Simple_repeat Simple_repeat 4 92 0 2366 53 40 7 chr9 32122374 32122675 -85739952 + AluY SINE Alu 1 311 0 414 259 144 0 chr9 32123418 32123557 -85739070 + MER46C DNA MER2_type 179 337 -1 338 308 77 65 chr9 32124093 32124200 -85738427 - L1MEd LINE L1 -5096 1023 919 2171 115 16 0 chr9 32124200 32124505 -85738122 - AluSq SINE Alu -3 310 1 338 308 77 65 chr9 32124505 32124735 -85737892 - L1MEd LINE L1 -5200 919 682 1983 140 0 3 chr9 32125397 32125690 -85736937 + AluSx SINE Alu 3 294 -18 25 31 0 0 chr9 32126477 32126509 -85736118 + AT_rich Low_complexity Low_complexity 1 32 0 2285 177 14 23 chr9 32127065 32127500 -85735127 + Tigger2a DNA MER2_type 1 431 -3 1504 153 102 28 chr9 32127693 32128052 -85734575 - Tigger3(Golem) DNA MER2_type -1 3028 1 26 0 0 0 chr9 32128149 32128175 -85734452 + AT_rich Low_complexity Low_complexity 1 26 0 398 329 81 6 chr9 32128343 32128504 -85734123 + LTR33 LTR ERVL 10 182 -339 314 334 89 44 chr9 32128995 32129333 -85733294 + L2 LINE L2 2346 2698 -616 1941 80 98 4 chr9 32131873 32132148 -85730479 + AluSq SINE Alu 1 301 -12 1059 296 101 52 chr9 32132621 32133358 -85729269 - L1M4 LINE L1 -1836 4310 3611 2386 46 0 0 chr9 32133358 32133669 -85728958 + AluY SINE Alu 1 311 0 1059 296 101 52 chr9 32133669 32134499 -85728128 - L1M4 LINE L1 -2535 3611 2665 284 333 0 0 chr9 32134518 32134632 -85727995 - L1M4 LINE L1 -3551 2595 2482 880 315 50 0 chr9 32134636 32134915 -85727712 - LTR16A LTR ERVL 0 450 158 538 300 82 25 chr9 32135029 32135382 -85727245 - L1M4 LINE L1 -3661 2485 2113 36 87 0 0 chr9 32135514 32135606 -85727021 + AT_rich Low_complexity Low_complexity 1 92 0 273 143 0 0 chr9 32136044 32136093 -85726534 - L1PA10 LINE L1 -1100 5046 4998 6382 91 17 0 chr9 32136094 32137200 -85725427 + L1PA10 LINE L1 5048 6168 0 22 0 0 0 chr9 32137271 32137293 -85725334 + AT_rich Low_complexity Low_complexity 1 22 0 1836 179 60 45 chr9 32137301 32137786 -85724841 + LTR22B LTR ERVK 1 492 0 10885 217 30 16 chr9 32137931 32140117 -85722510 - L1PA15 LINE L1 -3 6813 4659 2100 88 9 44 chr9 32140117 32140437 -85722190 - AluSc SINE Alu 0 309 1 10885 217 30 16 chr9 32140437 32140708 -85721919 - L1PA15 LINE L1 -2157 4659 4393 423 0 0 0 chr9 32140708 32140755 -85721872 + (TG)n Simple_repeat Simple_repeat 2 48 0 10885 217 30 16 chr9 32140755 32143834 -85718793 - L1PA15 LINE L1 -2423 4393 1189 28 0 0 0 chr9 32144382 32144410 -85718217 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr9 32144587 32144631 -85717996 + AT_rich Low_complexity Low_complexity 1 44 0 356 321 87 46 chr9 32144749 32145052 -85717575 + L1ME LINE L1 5257 5574 -590 1014 101 0 0 chr9 32145146 32145285 -85717342 - AluSg/x SINE Alu 0 312 174 1757 153 0 0 chr9 32145285 32145547 -85717080 - AluSx SINE Alu -48 264 3 303 304 46 0 chr9 32145550 32145676 -85716951 + L1ME LINE L1 5701 5831 -347 636 206 71 0 chr9 32145743 32145869 -85716758 - Tigger2 DNA MER2_type -11 2707 2573 63 57 0 0 chr9 32145869 32145974 -85716653 + AT_rich Low_complexity Low_complexity 1 105 0 1157 189 97 23 chr9 32146005 32146264 -85716363 - Tigger2 DNA MER2_type -150 2568 2291 273 213 0 93 chr9 32146267 32146342 -85716285 - Tigger2 DNA MER2_type -2650 68 1 180 0 0 0 chr9 32148229 32148249 -85714378 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 351 60 0 0 chr9 32148594 32148644 -85713983 + (CA)n Simple_repeat Simple_repeat 2 51 0 502 330 76 39 chr9 32148644 32149127 -85713500 - HERV16 LTR ERVL -1462 3570 3142 452 305 8 8 chr9 32149380 32149508 -85713119 - HERV16 LTR ERVL -3195 1801 1674 296 179 0 0 chr9 32149511 32149578 -85713049 - L1PA16 LINE L1 -1 6165 6099 637 336 47 45 chr9 32149659 32150215 -85712412 - HERV16 LTR ERVL -3502 1494 938 291 398 31 0 chr9 32150425 32150621 -85712006 - HERV16 LTR ERVL -4332 664 463 681 267 30 72 chr9 32151601 32151964 -85710663 - MLT1C LTR MaLR -114 353 6 440 318 4 64 chr9 32152025 32152258 -85710369 - L1ME LINE L1 -5842 228 10 199 297 27 0 chr9 32152325 32152399 -85710228 + MER5A DNA MER1_type 37 112 -77 230 180 16 0 chr9 32152768 32152829 -85709798 + (TTA)n Simple_repeat Simple_repeat 3 64 0 529 86 21 0 chr9 32153566 32153659 -85708968 + (TCTA)n Simple_repeat Simple_repeat 3 97 0 388 256 17 61 chr9 32154272 32154452 -85708175 + L1MC5 LINE L1 7730 7901 -60 201 342 18 18 chr9 32154528 32154642 -85707985 + L2 LINE L2 2458 2571 -743 225 85 34 34 chr9 32154836 32154895 -85707732 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 357 93 0 0 chr9 32154953 32155007 -85707620 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 269 155 17 0 chr9 32155050 32155108 -85707519 + (TA)n Simple_repeat Simple_repeat 2 60 0 583 350 78 69 chr9 32155227 32156099 -85706528 + L2 LINE L2 2375 3269 -44 1277 203 11 36 chr9 32156103 32156384 -85706243 + AluJo SINE Alu 21 294 -18 59 38 0 0 chr9 32156549 32156629 -85705998 + AT_rich Low_complexity Low_complexity 1 80 0 513 215 0 0 chr9 32156629 32156863 -85705764 + (TA)n Simple_repeat Simple_repeat 1 234 0 361 147 16 54 chr9 32157164 32157348 -85705279 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 268 260 158 0 chr9 32157565 32157692 -85704935 + LTR37A LTR ERV1 81 227 -199 542 273 53 0 chr9 32157729 32157916 -85704711 + LTR37A LTR ERV1 225 421 -5 1801 222 126 54 chr9 32158198 32158883 -85703744 + MER50 LTR ERV1 1 734 0 1686 176 3 0 chr9 32159442 32159746 -85702881 - AluJb SINE Alu 0 307 3 864 237 73 40 chr9 32160190 32160464 -85702163 - MLT1D LTR MaLR -7 498 216 438 198 25 0 chr9 32160478 32160575 -85702052 - MLT1D LTR MaLR -398 107 5 22 70 0 0 chr9 32160742 32160785 -85701842 + AT_rich Low_complexity Low_complexity 1 43 0 871 212 64 134 chr9 32161392 32161799 -85700828 - MLT1C LTR MaLR -4 448 11 23 0 0 0 chr9 32161983 32162006 -85700621 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 32162274 32162299 -85700328 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr9 32163482 32163505 -85699122 + AT_rich Low_complexity Low_complexity 1 23 0 1960 171 16 60 chr9 32163612 32163652 -85698975 - MLT2D LTR ERVL 0 414 374 303 28 0 0 chr9 32163652 32163688 -85698939 + (TG)n Simple_repeat Simple_repeat 1 36 0 1960 171 16 60 chr9 32163688 32164080 -85698547 - MLT2D LTR ERVL -40 374 1 1842 253 23 7 chr9 32164236 32164679 -85697948 - MER82 DNA MER2_type -8 645 196 198 103 0 0 chr9 32164704 32164733 -85697894 + (CA)n Simple_repeat Simple_repeat 1 29 0 1122 203 0 0 chr9 32164733 32164930 -85697697 - MER82 DNA MER2_type -450 203 7 641 304 121 48 chr9 32165711 32166208 -85696419 - MLT1H LTR MaLR 0 549 17 220 255 0 0 chr9 32167716 32167767 -85694860 + (TCCA)n Simple_repeat Simple_repeat 3 53 0 24 0 0 0 chr9 32168261 32168285 -85694342 + AT_rich Low_complexity Low_complexity 1 24 0 3645 159 12 37 chr9 32168753 32170068 -85692559 - L1MA4 LINE L1 -311 5989 4704 1026 244 93 4 chr9 32170282 32170528 -85692099 - MLT1A1 LTR MaLR -95 270 3 1094 244 80 14 chr9 32170787 32171074 -85691553 + MLT1A1 LTR MaLR 57 362 -3 2986 95 18 14 chr9 32172240 32172682 -85689945 - MLT2A1 LTR ERVL 0 444 1 700 230 17 91 chr9 32173227 32173457 -85689170 - MER20 DNA MER1_type 0 219 7 230 260 0 0 chr9 32174018 32174068 -85688559 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 200 111 0 28 chr9 32174483 32174519 -85688108 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 401 239 120 85 chr9 32174680 32174939 -85687688 + L1MC4 LINE L1 7739 8006 -36 1039 203 4 22 chr9 32174944 32175171 -85687456 - AluJo SINE Alu -6 306 84 3442 198 66 42 chr9 32175211 32176089 -85686538 + L1MB3 LINE L1 5285 6183 0 814 195 115 102 chr9 32176372 32176756 -85685871 + MLT1C LTR MaLR 1 389 -1 491 133 0 0 chr9 32177018 32177093 -85685534 + MADE1 DNA Mariner 1 75 -5 213 39 0 0 chr9 32177595 32177621 -85685006 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 346 347 62 14 chr9 32180365 32180509 -85682118 + MIR3 SINE MIR 45 195 -13 397 288 31 56 chr9 32181545 32181705 -85680922 - MIR SINE MIR -28 234 79 21 0 0 0 chr9 32181777 32181798 -85680829 + AT_rich Low_complexity Low_complexity 1 21 0 236 250 28 14 chr9 32181893 32181965 -85680662 + (TATG)n Simple_repeat Simple_repeat 2 74 0 244 363 0 52 chr9 32182758 32182893 -85679734 - MIR SINE MIR -129 133 6 23 0 0 0 chr9 32183609 32183632 -85678995 + AT_rich Low_complexity Low_complexity 1 23 0 2197 132 92 2 chr9 32185215 32185608 -85677019 - MSTA LTR MaLR 0 428 1 2020 204 52 2 chr9 32185749 32186155 -85676472 - MSTB LTR MaLR 0 426 1 348 325 83 40 chr9 32186258 32186560 -85676067 + L1MC4 LINE L1 7722 8036 -6 346 286 118 16 chr9 32186575 32186820 -85675807 + L1MC5 LINE L1 7508 7777 -184 256 333 0 0 chr9 32187130 32187205 -85675422 - MIR SINE MIR -127 135 61 295 368 46 62 chr9 32187208 32187515 -85675112 - MLT1I LTR MaLR -107 302 1 21 0 0 0 chr9 32187797 32187818 -85674809 + AT_rich Low_complexity Low_complexity 1 21 0 236 299 30 15 chr9 32188225 32188292 -85674335 - L2 LINE L2 -19 3253 3186 33 32 0 32 chr9 32189407 32189440 -85673187 + AT_rich Low_complexity Low_complexity 1 33 -27 2048 130 7 0 chr9 32189440 32189733 -85672894 + AluSx SINE Alu 1 295 -17 33 32 0 32 chr9 32189733 32189761 -85672866 + AT_rich Low_complexity Low_complexity 33 60 0 1522 213 52 56 chr9 32190047 32190074 -85672553 + MLT1C LTR MaLR 1 27 -440 261 0 0 0 chr9 32190074 32190103 -85672524 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 1522 213 52 56 chr9 32190103 32190167 -85672460 + MLT1C LTR MaLR 27 90 -377 1596 221 34 0 chr9 32190167 32190520 -85672107 - MLT1A1 LTR MaLR 0 365 1 1522 213 52 56 chr9 32190520 32190892 -85671735 + MLT1C LTR MaLR 90 463 -4 31 26 0 0 chr9 32191331 32191369 -85671258 + AT_rich Low_complexity Low_complexity 1 38 0 31 92 0 0 chr9 32191772 32191859 -85670768 + AT_rich Low_complexity Low_complexity 1 87 0 24 0 0 0 chr9 32192202 32192226 -85670401 + AT_rich Low_complexity Low_complexity 1 24 0 1397 226 34 0 chr9 32192354 32192651 -85669976 + AluJb SINE Alu 1 307 -5 252 59 0 0 chr9 32192654 32192688 -85669939 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 311 265 114 30 chr9 32192976 32193108 -85669519 + MLT1K LTR MaLR 165 307 -281 262 282 0 24 chr9 32194370 32194455 -85668172 + Charlie7 DNA MER1_type 23 105 -2507 3125 158 68 10 chr9 32195022 32195612 -85667015 + L1PA16 LINE L1 5543 6166 0 398 396 7 0 chr9 32196350 32196489 -85666138 + L2 LINE L2 3123 3262 -10 470 339 113 17 chr9 32199549 32199788 -85662839 - L2 LINE L2 -537 2777 2516 305 275 11 22 chr9 32200308 32200391 -85662236 - L1MC4 LINE L1 -1339 6703 6620 189 0 0 0 chr9 32200391 32200412 -85662215 + (CA)n Simple_repeat Simple_repeat 2 22 0 6174 150 65 9 chr9 32200540 32201703 -85660924 - Tigger3b DNA MER2_type -2 1229 1 24 0 0 0 chr9 32201819 32201843 -85660784 + AT_rich Low_complexity Low_complexity 1 24 0 5741 108 35 1 chr9 32201843 32203510 -85659117 + L1PA11 LINE L1 4462 6166 -8 6273 174 119 93 chr9 32203635 32205328 -85657299 + MER52A LTR ERV1 2 1739 -16 186 103 0 0 chr9 32205424 32205453 -85657174 + (TA)n Simple_repeat Simple_repeat 2 30 0 337 270 72 7 chr9 32205466 32205618 -85657009 - L1MEc LINE L1 -2471 3744 3583 406 228 49 0 chr9 32205638 32205800 -85656827 + (TA)n Simple_repeat Simple_repeat 1 170 0 1168 265 58 51 chr9 32205839 32206669 -85655958 - L1MEc LINE L1 -2673 3542 2707 1598 295 61 7 chr9 32206699 32207601 -85655026 - L1MEc LINE L1 -3705 2510 1587 843 276 70 47 chr9 32207610 32208055 -85654572 + MLT1C LTR MaLR 9 463 -4 2700 276 72 55 chr9 32208097 32209617 -85653010 - L1MEc LINE L1 -4815 1581 37 891 192 129 17 chr9 32210013 32210300 -85652327 + MER33 DNA MER1_type 6 324 0 481 251 153 16 chr9 32210332 32210515 -85652112 - MER58A DNA MER1_type -15 209 2 365 333 69 0 chr9 32210562 32210721 -85651906 + MLT1J LTR MaLR 336 505 -6 192 97 0 0 chr9 32211308 32211339 -85651288 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7534 25 0 0 chr9 32211339 32212467 -85650160 - L1PA3 LINE L1 -6 6149 5016 204 232 84 74 chr9 32212771 32212866 -85649761 - MIR SINE MIR -68 194 99 22 0 0 0 chr9 32213790 32213812 -85648815 + AT_rich Low_complexity Low_complexity 1 22 0 369 245 0 0 chr9 32213968 32214070 -85648557 + (TA)n Simple_repeat Simple_repeat 2 103 0 26 30 0 0 chr9 32214262 32214295 -85648332 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 32215426 32215447 -85647180 + AT_rich Low_complexity Low_complexity 1 21 0 1007 245 60 10 chr9 32215461 32215759 -85646868 + L1MCa LINE L1 1288 1600 -4826 1518 211 63 16 chr9 32215874 32216050 -85646577 + MLT1B LTR MaLR 1 167 -223 261 0 0 0 chr9 32216050 32216079 -85646548 + (TC)n Simple_repeat Simple_repeat 2 30 0 1518 211 63 16 chr9 32216079 32216267 -85646360 + MLT1B LTR MaLR 167 382 -8 7581 25 2 0 chr9 32216290 32217732 -85644895 + L1PA3 LINE L1 4709 6152 -3 277 49 0 49 chr9 32217794 32217835 -85644792 + THE1B LTR MaLR 1 39 -325 206 62 31 0 chr9 32217835 32217867 -85644760 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 250 103 11 69 chr9 32217873 32217960 -85644667 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 12897 212 97 14 chr9 32217979 32223088 -85639539 - L1PBa LINE L1 -1113 5749 60 3794 150 79 15 chr9 32223056 32223716 -85638911 - THE1-int LTR MaLR -623 957 256 * 3083 230 88 19 chr9 32224241 32224977 -85637650 + L1MD2 LINE L1 5352 6036 -1749 243 0 0 0 chr9 32224977 32225004 -85637623 + (CA)n Simple_repeat Simple_repeat 2 28 0 3083 230 88 19 chr9 32225004 32225174 -85637453 + L1MD2 LINE L1 6036 7747 -38 28 116 0 0 chr9 32225484 32225631 -85636996 + AT_rich Low_complexity Low_complexity 1 147 0 188 268 0 0 chr9 32225718 32225759 -85636868 + L2 LINE L2 3189 3229 -84 24 77 0 0 chr9 32226471 32226523 -85636104 + AT_rich Low_complexity Low_complexity 1 52 0 1112 246 56 34 chr9 32227072 32227429 -85635198 + MLT1A1 LTR MaLR 1 365 0 2790 269 91 26 chr9 32227431 32228593 -85634034 + L1MEc LINE L1 34 1271 -5125 22 80 0 0 chr9 32229571 32229621 -85633006 + AT_rich Low_complexity Low_complexity 1 50 0 408 40 0 0 chr9 32229775 32229825 -85632802 + (CA)n Simple_repeat Simple_repeat 1 50 0 250 346 31 8 chr9 32229903 32230030 -85632597 - L1ME LINE L1 -297 5824 5695 228 320 97 0 chr9 32230362 32230465 -85632162 + L2 LINE L2 3181 3293 -20 358 325 43 24 chr9 32231560 32231746 -85630881 + MIR SINE MIR 50 236 -26 22 0 0 0 chr9 32232420 32232442 -85630185 + AT_rich Low_complexity Low_complexity 1 22 0 1471 186 54 0 chr9 32232444 32232723 -85629904 + AluJb SINE Alu 1 294 -18 288 177 44 51 chr9 32232901 32233059 -85629568 + (TTTA)n Simple_repeat Simple_repeat 3 159 0 1285 277 44 22 chr9 32233375 32233950 -85628677 - MER76 LTR ERV 0 688 47 21 36 0 0 chr9 32235271 32235299 -85627328 + AT_rich Low_complexity Low_complexity 1 28 0 293 364 17 0 chr9 32235474 32235647 -85626980 - L1MD3 LINE L1 -12 7983 7808 22 0 0 0 chr9 32235659 32235681 -85626946 + AT_rich Low_complexity Low_complexity 1 22 0 523 218 58 89 chr9 32235771 32236734 -85625893 - L1MD2 LINE L1 -165 6077 5189 1898 152 53 31 chr9 32237333 32237689 -85624938 + THE1B LTR MaLR 1 364 0 10596 107 29 1 chr9 32237689 32239226 -85623401 + THE1B-int LTR MaLR 1 1580 0 1707 182 106 0 chr9 32239226 32239555 -85623072 + THE1B LTR MaLR 1 364 0 206 132 38 19 chr9 32239995 32240048 -85622579 + (TTTAA)n Simple_repeat Simple_repeat 5 58 0 21 0 0 0 chr9 32240476 32240497 -85622130 + AT_rich Low_complexity Low_complexity 1 21 0 1200 198 14 0 chr9 32240661 32240878 -85621749 + L1PA14 LINE L1 1 220 -7361 1117 100 65 6 chr9 32240890 32241060 -85621567 + L1PA12 LINE L1 1964 2143 -5438 13274 173 13 11 chr9 32241060 32242785 -85619842 + L1PA14 LINE L1 215 1936 -5648 1551 189 73 14 chr9 32242785 32243139 -85619488 - THE1C LTR MaLR 0 375 1 13274 173 13 11 chr9 32243139 32244900 -85617727 + L1PA14 LINE L1 1936 3979 -3605 5859 116 7 2 chr9 32244900 32246319 -85616308 + L1PA14 LINE L1 6167 7599 0 1902 150 0 7 chr9 32246538 32246832 -85615795 + AluSx SINE Alu 1 292 -20 1427 143 14 10 chr9 32248659 32248953 -85613674 - L1P LINE L1 -743 5403 5109 3578 122 35 0 chr9 32248953 32249506 -85613121 + L1PA12 LINE L1 5579 6164 -4 25 65 0 0 chr9 32251088 32251134 -85611493 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr9 32252471 32252492 -85610135 + AT_rich Low_complexity Low_complexity 1 21 0 439 305 18 66 chr9 32252605 32252748 -85609879 + MIR SINE MIR 4 152 -110 1546 191 0 38 chr9 32252748 32252917 -85609710 - AluJo SINE Alu -4 308 134 230 0 33 0 chr9 32252917 32252947 -85609680 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2302 85 0 3 chr9 32252947 32253230 -85609397 - AluSq SINE Alu -29 284 3 1546 191 0 38 chr9 32253230 32253378 -85609249 - AluJo SINE Alu -176 136 2 439 305 18 66 chr9 32253378 32253506 -85609121 + MIR SINE MIR 152 262 0 2690 206 55 26 chr9 32254029 32255228 -85607399 + L1M2 LINE L1 4295 5598 -714 38 39 0 0 chr9 32255518 32255570 -85607057 + AT_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr9 32256493 32256525 -85606102 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 32257391 32257412 -85605215 + AT_rich Low_complexity Low_complexity 1 21 0 271 296 57 0 chr9 32257570 32257658 -85604969 - MIR SINE MIR -76 186 94 1806 216 7 39 chr9 32257659 32258098 -85604529 - L1MA10 LINE L1 -39 6295 5871 * 2539 195 12 51 chr9 32258097 32259005 -85603622 + L1MB1 LINE L1 4960 5836 -332 19991 54 1 12 chr9 32259010 32262403 -85600224 - L1PA4 LINE L1 0 6155 2786 8067 86 31 0 chr9 32262419 32263504 -85599123 - L1PA4 LINE L1 -5015 1131 13 2866 221 51 34 chr9 32263589 32264359 -85598268 - L1MD1 LINE L1 0 6242 5460 28515 134 13 57 chr9 32264521 32270006 -85592621 + L1PA8 LINE L1 1 5146 -1026 219 36 0 0 chr9 32270006 32270034 -85592593 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28515 134 13 57 chr9 32270034 32271009 -85591618 + L1PA8 LINE L1 5146 6163 -9 2924 242 11 14 chr9 32271360 32272161 -85590466 + L1 LINE L1 4314 5112 -1034 1402 164 128 2 chr9 32272170 32272543 -85590084 - L1PB1 LINE L1 -700 5603 5187 2981 92 23 138 chr9 32272544 32272708 -85589919 + L1PB1 LINE L1 5611 5792 -359 324 0 0 0 chr9 32272708 32272744 -85589883 + (CA)n Simple_repeat Simple_repeat 2 37 0 497 75 21 21 chr9 32272745 32272839 -85589788 + (TA)n Simple_repeat Simple_repeat 1 94 0 2981 92 23 138 chr9 32272839 32273282 -85589345 + L1PB1 LINE L1 5791 6150 -1 2793 200 10 2 chr9 32273318 32273996 -85588631 + L1PA16 LINE L1 5106 5787 -379 9073 190 17 19 chr9 32273997 32276906 -85585721 + L1PB3 LINE L1 3261 6154 0 1922 202 18 0 chr9 32276915 32277296 -85585331 + L1PA16 LINE L1 5779 6166 0 27 49 0 0 chr9 32277800 32277841 -85584786 + AT_rich Low_complexity Low_complexity 1 41 0 1565 183 4 18 chr9 32278912 32279191 -85583436 + AluJb SINE Alu 1 275 -37 294 206 0 0 chr9 32279196 32279259 -85583368 + GA-rich Low_complexity Low_complexity 5 67 0 722 354 116 42 chr9 32279260 32279775 -85582852 - L2 LINE L2 -410 2904 2428 1516 142 36 47 chr9 32279775 32280049 -85582578 + AluSx SINE Alu 3 273 -39 722 354 116 42 chr9 32280049 32280657 -85581970 - L2 LINE L2 -886 2428 1698 300 286 103 8 chr9 32281303 32281429 -85581198 - MIR SINE MIR -122 140 3 381 391 103 26 chr9 32281504 32282118 -85580509 - L2 LINE L2 -2341 973 313 189 0 0 0 chr9 32283256 32283277 -85579350 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1642 172 0 0 chr9 32283288 32283555 -85579072 - AluSx SINE Alu -45 267 1 247 343 0 0 chr9 32285655 32285728 -85576899 + MIR SINE MIR 82 154 -108 180 200 0 0 chr9 32285917 32285957 -85576670 + (CATATA)n Simple_repeat Simple_repeat 6 45 0 1691 162 0 45 chr9 32285985 32286111 -85576516 + AluJb SINE Alu 17 147 -165 2542 64 0 0 chr9 32286111 32286422 -85576205 + AluY SINE Alu 1 311 0 1691 162 0 45 chr9 32286422 32286603 -85576024 + AluJb SINE Alu 147 310 -2 2162 109 0 20 chr9 32288091 32288446 -85574181 - AluSx SINE Alu 0 349 1 2465 51 6 10 chr9 32288868 32289204 -85573423 + AluY SINE Alu 1 335 0 300 333 16 0 chr9 32290160 32290283 -85572344 + MIR3 SINE MIR 74 198 -10 2296 88 0 0 chr9 32291667 32291964 -85570663 - AluY SINE Alu -14 297 1 180 0 0 0 chr9 32292119 32292139 -85570488 + (A)n Simple_repeat Simple_repeat 1 20 0 141 53 0 0 chr9 32293126 32293351 -85569276 + AT_rich Low_complexity Low_complexity 1 225 0 21 36 0 0 chr9 32293591 32293619 -85569008 + AT_rich Low_complexity Low_complexity 1 28 0 1029 103 13 0 chr9 32295171 32295327 -85567300 + L1PA10 LINE L1 5995 6152 -16 25 31 0 0 chr9 32295331 32295363 -85567264 + AT_rich Low_complexity Low_complexity 1 32 0 2261 95 0 7 chr9 32295545 32295850 -85566777 - AluY SINE Alu -8 303 1 216 0 0 0 chr9 32296338 32296362 -85566265 + (CA)n Simple_repeat Simple_repeat 2 25 0 1540 189 0 21 chr9 32296506 32296787 -85565840 + AluJb SINE Alu 6 280 -32 234 0 0 0 chr9 32296787 32296813 -85565814 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 215 194 16 16 chr9 32296968 32297030 -85565597 + (TA)n Simple_repeat Simple_repeat 2 63 0 216 277 15 0 chr9 32298569 32298634 -85563993 - MIR SINE MIR -59 203 138 855 155 0 27 chr9 32298719 32298867 -85563760 + AluJo SINE Alu 9 152 -160 255 125 0 0 chr9 32298886 32298926 -85563701 + (A)n Simple_repeat Simple_repeat 1 40 0 225 178 0 0 chr9 32299550 32299595 -85563032 + LTR66 LTR ERVL 394 438 -172 345 186 10 21 chr9 32299631 32299728 -85562899 + (TA)n Simple_repeat Simple_repeat 1 96 0 209 285 16 98 chr9 32300823 32300946 -85561681 - MIR SINE MIR -12 250 138 200 246 15 46 chr9 32300983 32301048 -85561579 + L2 LINE L2 2556 2618 -696 548 295 57 9 chr9 32301491 32301701 -85560926 - L2 LINE L2 0 3313 3094 21 0 0 0 chr9 32301957 32301978 -85560649 + AT_rich Low_complexity Low_complexity 1 21 0 203 297 31 0 chr9 32302042 32302106 -85560521 + L2 LINE L2 3207 3272 0 529 287 33 15 chr9 32302429 32302697 -85559930 + L1MCa LINE L1 1662 1982 -4444 22 35 0 0 chr9 32302842 32302871 -85559756 + AT_rich Low_complexity Low_complexity 1 29 0 257 105 0 0 chr9 32303038 32303076 -85559551 + tRNA-Leu-TTG tRNA tRNA 1 38 -48 238 171 13 13 chr9 32304141 32304217 -85558410 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 35 0 0 chr9 32304432 32304461 -85558166 + AT_rich Low_complexity Low_complexity 1 29 0 390 239 11 0 chr9 32304764 32304856 -85557771 - MER94 DNA DNA -41 93 1 288 0 0 0 chr9 32304982 32305014 -85557613 + (TG)n Simple_repeat Simple_repeat 2 33 0 29 60 0 0 chr9 32305184 32305234 -85557393 + AT_rich Low_complexity Low_complexity 1 50 0 216 293 0 127 chr9 32306155 32306312 -85556315 - MIR SINE MIR -77 185 49 335 184 32 165 chr9 32306786 32306944 -85555683 + MER20 DNA MER1_type 1 137 -82 1830 151 10 13 chr9 32307352 32307657 -85554970 + AluSx SINE Alu 1 304 -8 201 121 0 0 chr9 32308177 32308210 -85554417 + (A)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr9 32308603 32308631 -85553996 + AT_rich Low_complexity Low_complexity 1 28 0 3386 222 73 23 chr9 32309642 32310422 -85552205 + L1MD1 LINE L1 4983 5843 -399 2220 130 28 3 chr9 32310422 32310777 -85551850 - THE1B LTR MaLR 0 364 1 3386 222 73 23 chr9 32310777 32311198 -85551429 + L1MD1 LINE L1 5843 6242 0 21 36 0 0 chr9 32311292 32311320 -85551307 + AT_rich Low_complexity Low_complexity 1 28 0 1728 188 0 0 chr9 32311320 32311628 -85550999 - AluJb SINE Alu -3 309 2 21 36 0 0 chr9 32312519 32312547 -85550080 + AT_rich Low_complexity Low_complexity 1 28 0 3342 114 4 0 chr9 32313659 32314169 -85548458 - L1P LINE L1 -758 5388 4877 5008 77 36 0 chr9 32314169 32314885 -85547742 + L1PA7 LINE L1 5438 6154 0 216 255 0 0 chr9 32315834 32315885 -85546742 + (CA)n Simple_repeat Simple_repeat 2 52 0 189 0 0 0 chr9 32316802 32316823 -85545804 + (CA)n Simple_repeat Simple_repeat 2 22 0 2063 99 24 10 chr9 32317971 32318263 -85544364 - AluSx SINE Alu -16 296 1 21 0 0 0 chr9 32318903 32318924 -85543703 + AT_rich Low_complexity Low_complexity 1 21 0 2095 136 0 10 chr9 32318943 32319245 -85543382 + AluSg SINE Alu 1 299 -11 25 0 0 0 chr9 32320097 32320122 -85542505 + AT_rich Low_complexity Low_complexity 1 25 0 3135 148 45 42 chr9 32321922 32322515 -85540112 + MER7C DNA MER2_type 1 595 -7 851 256 128 25 chr9 32322835 32323272 -85539355 + Charlie1b DNA MER1_type 41 522 -1 195 42 0 0 chr9 32324611 32324635 -85537992 + (TTCC)n Simple_repeat Simple_repeat 4 27 0 200 259 0 17 chr9 32324737 32324795 -85537832 + CT-rich Low_complexity Low_complexity 4 60 0 211 336 78 16 chr9 32324795 32324923 -85537704 + MIR SINE MIR 77 212 -50 276 53 0 0 chr9 32326351 32326389 -85536238 + (CA)n Simple_repeat Simple_repeat 1 38 0 931 251 96 12 chr9 32326389 32326724 -85535903 + L1MC1 LINE L1 4260 4622 -1524 261 127 0 36 chr9 32326756 32326776 -85535851 - L1 LINE L1 -1298 4848 4829 4497 172 33 7 chr9 32326776 32327658 -85534969 + L1MC1 LINE L1 5424 6328 -5 261 127 0 36 chr9 32327658 32327692 -85534935 - L1 LINE L1 -1317 4829 4796 6290 90 7 21 chr9 32327692 32328669 -85533958 + L1PA10 LINE L1 5188 6151 -17 561 214 57 52 chr9 32328684 32328913 -85533714 + L1ME1 LINE L1 5651 5880 -286 719 146 24 8 chr9 32328974 32329097 -85533530 - L1PA16 LINE L1 -313 5853 5729 3241 137 41 60 chr9 32329143 32329779 -85532848 - L1PA16 LINE L1 -4 6162 5539 393 288 23 34 chr9 32329780 32329957 -85532670 + L1MB8 LINE L1 5992 6166 -12 221 367 13 0 chr9 32330293 32330372 -85532255 - L2 LINE L2 -17 3296 3217 327 268 34 34 chr9 32331002 32331083 -85531544 + (TA)n Simple_repeat Simple_repeat 1 81 -98 2978 196 18 5 chr9 32331083 32331680 -85530947 + MER6A DNA MER2_type 1 605 0 327 268 34 34 chr9 32331680 32331777 -85530850 + (TA)n Simple_repeat Simple_repeat 80 179 0 974 258 39 29 chr9 32331792 32332102 -85530525 - MER83C LTR ERV1 -12 361 49 1278 246 43 17 chr9 32332155 32332500 -85530127 - MER83C-int LTR ERV1 0 4880 4527 441 325 32 16 chr9 32332624 32332876 -85529751 - MER83C-int LTR ERV1 -2812 4944 4689 850 135 6 58 chr9 32332899 32333055 -85529572 - THE1A LTR MaLR 0 355 208 10713 110 14 2 chr9 32333155 32334670 -85527957 - THE1A-int LTR MaLR -47 1533 1 2173 105 27 68 chr9 32334670 32335040 -85527587 - THE1A LTR MaLR 0 355 1 585 339 31 54 chr9 32335060 32335676 -85526951 - MER83C-int LTR ERV1 -2097 2857 2256 1436 306 58 22 chr9 32335843 32336582 -85526045 - MER83C-int LTR ERV1 -3073 1881 1116 4227 242 53 26 chr9 32336740 32337957 -85524670 - MER83C-int LTR ERV1 -3847 1033 12 915 260 30 48 chr9 32337957 32338288 -85524339 - MER83C LTR ERV1 0 373 49 2182 116 0 0 chr9 32338348 32338642 -85523985 + AluY SINE Alu 1 294 -17 273 210 16 0 chr9 32338909 32338971 -85523656 - MER41A LTR ERV1 -91 463 401 2355 199 9 0 chr9 32338972 32339435 -85523192 + L1 LINE L1 4538 5004 -1142 277 311 19 10 chr9 32339652 32339755 -85522872 + L2 LINE L2 3210 3313 0 26 50 0 0 chr9 32340506 32340546 -85522081 + AT_rich Low_complexity Low_complexity 1 40 0 287 267 155 0 chr9 32341048 32341164 -85521463 - MER67D LTR ERV1 0 514 381 1365 197 21 21 chr9 32341203 32341493 -85521134 - AluJo SINE Alu -12 300 11 1658 176 27 67 chr9 32341504 32341907 -85520720 - MER67D LTR ERV1 -127 387 1 275 248 117 39 chr9 32342524 32342730 -85519897 + HAL1 LINE L1 2284 2505 -2 2378 97 0 0 chr9 32343369 32343677 -85518950 - AluSc SINE Alu -1 308 1 953 50 0 0 chr9 32344936 32345056 -85517571 - L1PA4 LINE L1 0 6155 6036 6352 39 7 0 chr9 32345156 32345931 -85516696 - L1PA4 LINE L1 -122 6033 5254 11609 40 0 1 chr9 32345944 32347379 -85515248 + L1P LINE L1 2974 4407 -1739 22 35 0 0 chr9 32348290 32348319 -85514308 + AT_rich Low_complexity Low_complexity 1 29 0 384 40 0 0 chr9 32349038 32349088 -85513539 + (CA)n Simple_repeat Simple_repeat 1 50 0 266 49 0 24 chr9 32349657 32349698 -85512929 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 3719 38 2 0 chr9 32349698 32350146 -85512481 - L1PA3 LINE L1 -24 6131 5683 6825 202 22 13 chr9 32350254 32351825 -85510802 - L1PB1 LINE L1 -1591 4555 2971 3401 164 33 6 chr9 32351826 32353001 -85509626 + L1PB1 LINE L1 4585 5791 -360 237 156 47 0 chr9 32353020 32353084 -85509543 - L1MC4 LINE L1 -1339 6703 6637 273 221 0 0 chr9 32353086 32353154 -85509473 + (TA)n Simple_repeat Simple_repeat 2 69 0 2157 136 14 8 chr9 32353157 32353517 -85509110 + L1PB1 LINE L1 5787 6148 -3 1772 180 0 20 chr9 32353553 32353682 -85508945 + AluSx SINE Alu 1 131 -181 181 0 33 33 chr9 32353682 32353712 -85508915 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1772 180 0 20 chr9 32353712 32353888 -85508739 + AluSx SINE Alu 131 300 -12 207 100 0 0 chr9 32353888 32353918 -85508709 + (GA)n Simple_repeat Simple_repeat 1 30 0 297 244 173 12 chr9 32353939 32354107 -85508520 - L1MC4 LINE L1 -2287 5521 5327 21 0 0 0 chr9 32354339 32354360 -85508267 + AT_rich Low_complexity Low_complexity 1 21 0 320 324 9 18 chr9 32354564 32354675 -85507952 + MIR SINE MIR 36 145 -63 206 279 238 7 chr9 32354845 32354992 -85507635 + MIR SINE MIR 72 252 -10 639 182 25 0 chr9 32355047 32355206 -85507421 + GA-rich Low_complexity Low_complexity 3 165 0 636 185 17 8 chr9 32355489 32355608 -85507019 - AluJb SINE Alu -40 272 153 242 196 0 0 chr9 32355665 32355711 -85506916 + (TG)n Simple_repeat Simple_repeat 2 47 0 328 160 67 40 chr9 32356690 32356765 -85505862 - AluJ/FRAM SINE Alu 0 302 226 1252 205 47 12 chr9 32356768 32356904 -85505723 - AluJb SINE Alu -49 263 133 207 0 0 0 chr9 32356904 32356927 -85505700 + (TG)n Simple_repeat Simple_repeat 2 24 0 1252 205 47 12 chr9 32356927 32357044 -85505583 - AluJb SINE Alu -179 133 1 1300 130 0 19 chr9 32357501 32357709 -85504918 + L1PA15 LINE L1 5962 6165 0 232 341 34 11 chr9 32358998 32359086 -85503541 + L2 LINE L2 3224 3313 0 852 151 63 0 chr9 32359722 32359881 -85502746 - L1MA5 LINE L1 -6 6294 6126 2373 92 0 0 chr9 32360897 32361202 -85501425 - AluSq SINE Alu -8 305 1 6690 66 5 2 chr9 32361675 32362908 -85499719 + L1PA7 LINE L1 4921 6168 0 24 53 0 0 chr9 32363386 32363424 -85499203 + AT_rich Low_complexity Low_complexity 1 38 0 42832 44 9 1 chr9 32365564 32371049 -85491578 - L1P1 LINE L1 -627 5528 1 1635 196 3 69 chr9 32371464 32371856 -85490771 + MER47A DNA MER2_type 1 366 0 2317 151 61 37 chr9 32373149 32373638 -85488989 + L1MA7 LINE L1 5782 6282 -9 1752 156 4 4 chr9 32373713 32373988 -85488639 + AluSx SINE Alu 1 275 -37 228 301 128 23 chr9 32374734 32374867 -85487760 - LTR67 LTR ERVL -248 309 163 369 283 40 11 chr9 32375010 32375187 -85487440 - MER113 DNA MER1_type? -339 182 1 180 0 0 0 chr9 32377074 32377094 -85485533 + (A)n Simple_repeat Simple_repeat 1 20 0 229 91 73 73 chr9 32377539 32377594 -85485033 - L1M2c LINE L1 -4781 2008 1954 197 119 24 0 chr9 32379008 32379050 -85483577 + (CA)n Simple_repeat Simple_repeat 2 44 0 1633 91 4 4 chr9 32379542 32379772 -85482855 + AluY SINE Alu 72 301 -10 359 310 21 7 chr9 32379832 32379974 -85482653 + L1M4 LINE L1 2 145 -6397 2732 155 33 51 chr9 32380023 32380935 -85481692 - MER52C LTR ERV1 -1 1277 303 241 253 159 60 chr9 32381142 32381324 -85481303 + L1M4 LINE L1 340 539 -6003 * 487 228 24 0 chr9 32381323 32381450 -85481177 - L1 LINE L1 -2455 3691 3562 * 1651 176 26 31 chr9 32381447 32382970 -85479657 + L1PB4 LINE L1 4592 6153 -3 2528 101 3 0 chr9 32383030 32383388 -85479239 + L1PB1 LINE L1 5787 6145 -6 255 79 0 0 chr9 32385829 32385867 -85476760 + (CA)n Simple_repeat Simple_repeat 2 39 0 768 353 106 30 chr9 32386036 32386814 -85475813 - L2 LINE L2 0 3313 2456 928 311 153 24 chr9 32386814 32387535 -85475092 - L2 LINE L2 -988 2326 1513 784 304 127 15 chr9 32387567 32388031 -85474596 - L2 LINE L2 -2427 887 372 24 32 0 0 chr9 32389040 32389071 -85473556 + AT_rich Low_complexity Low_complexity 1 31 0 921 299 70 24 chr9 32390654 32391028 -85471599 + LTR16A LTR ERVL 60 450 0 204 400 19 9 chr9 32391451 32391556 -85471071 + MIR SINE MIR 1 106 -156 35 54 0 0 chr9 32392215 32392271 -85470356 + AT_rich Low_complexity Low_complexity 1 56 0 838 236 4 36 chr9 32392361 32392586 -85470041 + MER20 DNA MER1_type 2 219 0 291 28 0 0 chr9 32393422 32393458 -85469169 + (TG)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr9 32393490 32393520 -85469107 + AT_rich Low_complexity Low_complexity 1 30 0 5121 152 19 8 chr9 32394378 32395468 -85467159 - L1P4 LINE L1 -649 5514 4413 21 0 0 0 chr9 32397404 32397425 -85465202 + AT_rich Low_complexity Low_complexity 1 21 0 906 326 38 30 chr9 32397713 32398186 -85464441 - HERV16 LTR ERVL -4214 782 306 236 254 15 0 chr9 32398223 32398290 -85464337 - L1MC/D LINE L1 -2420 5575 5508 22 70 0 0 chr9 32398373 32398416 -85464211 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr9 32399665 32399692 -85462935 + AT_rich Low_complexity Low_complexity 1 27 0 2230 111 16 81 chr9 32399734 32400166 -85462461 - L1PA13 LINE L1 -3 6160 5757 3873 101 7 2 chr9 32400166 32400720 -85461907 + L1PA12 LINE L1 5347 5903 -265 6581 240 104 26 chr9 32400773 32402245 -85460382 + L1MDa LINE L1 14 1369 -5171 237 65 0 0 chr9 32402245 32402276 -85460351 + (CA)n Simple_repeat Simple_repeat 2 32 0 6581 240 104 26 chr9 32402276 32403015 -85459612 + L1MDa LINE L1 1369 2416 -4124 578 193 114 0 chr9 32403015 32403129 -85459498 + FLAM_C SINE Alu 1 127 -6 6581 240 104 26 chr9 32403129 32403225 -85459402 + L1MDa LINE L1 2416 2503 -4037 2661 107 12 12 chr9 32403240 32403642 -85458985 + L1P4 LINE L1 5398 5799 -362 1674 277 94 25 chr9 32406886 32407663 -85454964 + L1MDa LINE L1 361 1191 -5530 21 0 0 0 chr9 32407667 32407688 -85454939 + AT_rich Low_complexity Low_complexity 1 21 0 1228 282 37 11 chr9 32407708 32408166 -85454461 + L1MDa LINE L1 3719 4188 -2352 1179 197 33 158 chr9 32408169 32408687 -85453940 - MSTB2 LTR MaLR -4 453 1 4147 250 55 18 chr9 32408688 32410158 -85452469 + L1MDa LINE L1 4186 5715 -825 1770 161 13 7 chr9 32410158 32410468 -85452159 + AluJb SINE Alu 1 312 0 4147 250 55 18 chr9 32410468 32410497 -85452130 + L1MDa LINE L1 5715 5741 -799 210 284 57 57 chr9 32410565 32410653 -85451974 - L2 LINE L2 -35 3237 3150 333 82 0 0 chr9 32411192 32411241 -85451386 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 21 0 0 0 chr9 32412081 32412102 -85450525 + AT_rich Low_complexity Low_complexity 1 21 0 42416 50 3 2 chr9 32412153 32418281 -85444346 - L1PA4 LINE L1 -8 6147 13 579 167 0 18 chr9 32418331 32418445 -85444182 + L1PA13 LINE L1 6020 6131 -32 748 186 0 0 chr9 32418734 32418858 -85443769 + FRAM SINE Alu 38 161 -15 24 0 0 0 chr9 32419203 32419227 -85443400 + AT_rich Low_complexity Low_complexity 1 24 0 1131 267 57 35 chr9 32419524 32420156 -85442471 - L1M4 LINE L1 -1492 4654 4009 * 2370 236 58 19 chr9 32420140 32420883 -85441744 - L1M4 LINE L1 -1970 4987 4216 232 233 0 0 chr9 32420895 32420938 -85441689 + polypyrimidine Low_complexity Low_complexity 2 44 0 345 300 17 17 chr9 32420961 32421081 -85441546 + Charlie8 DNA MER1_type 157 276 -2141 627 275 58 0 chr9 32424197 32424455 -85438172 - L1M4 LINE L1 -3171 3786 3514 253 207 69 0 chr9 32424511 32424569 -85438058 - L1M4 LINE L1 -5775 1084 1023 665 284 114 7 chr9 32424585 32424856 -85437771 - L1M4 LINE L1 -5886 973 674 2468 210 30 0 chr9 32424866 32425327 -85437300 - MER70B LTR ERVL -103 475 1 793 333 136 39 chr9 32425327 32425864 -85436763 - L1M4 LINE L1 -6161 698 110 198 0 0 0 chr9 32425864 32425886 -85436741 + (TC)n Simple_repeat Simple_repeat 1 22 0 239 0 32 0 chr9 32425886 32425917 -85436710 + (CA)n Simple_repeat Simple_repeat 1 32 0 204 97 0 0 chr9 32426004 32426035 -85436592 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 239 246 108 0 chr9 32426042 32426107 -85436520 - L1MDa LINE L1 -6465 75 4 22 0 0 0 chr9 32426695 32426717 -85435910 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 32426949 32426985 -85435642 + AT_rich Low_complexity Low_complexity 1 36 0 250 321 85 29 chr9 32427191 32427437 -85435190 - L1M4 LINE L1 -2192 3954 3695 1991 56 12 0 chr9 32428079 32428330 -85434297 - AluY SINE Alu -5 306 53 23 54 0 0 chr9 32428720 32428757 -85433870 + AT_rich Low_complexity Low_complexity 1 37 0 326 252 106 41 chr9 32429828 32429951 -85432676 + MIR SINE MIR 121 251 -11 941 293 151 26 chr9 32430001 32430935 -85431692 + L1M4 LINE L1 1390 2440 -3944 737 272 39 85 chr9 32430965 32431602 -85431025 + L1M4 LINE L1 5023 5630 -752 234 365 14 35 chr9 32434299 32434444 -85428183 - MIR3 SINE MIR -26 182 41 180 0 0 0 chr9 32436392 32436412 -85426215 + (A)n Simple_repeat Simple_repeat 1 20 0 200 268 41 0 chr9 32437005 32437102 -85425525 + (TA)n Simple_repeat Simple_repeat 1 101 0 761 314 40 36 chr9 32437152 32437504 -85425123 + L1M3d LINE L1 55 677 -5214 265 323 79 63 chr9 32437545 32437734 -85424893 + L1M3d LINE L1 202 393 -5498 498 122 12 0 chr9 32437817 32437899 -85424728 + L1MB1 LINE L1 5320 5402 -766 * 2266 67 7 0 chr9 32437894 32438194 -85424433 - L1PA5 LINE L1 -1068 5078 4777 7424 38 1 0 chr9 32438194 32439272 -85423355 + L1PA5 LINE L1 5075 6153 -1 3021 201 52 36 chr9 32439272 32440044 -85422583 + L1MB1 LINE L1 5385 6168 0 403 302 72 0 chr9 32440260 32440399 -85422228 + MIR SINE MIR 59 207 -55 273 217 228 6 chr9 32440854 32441034 -85421593 - MER97a DNA MER1_type? -2 892 673 1442 236 75 16 chr9 32441053 32441426 -85421201 - LTR52 LTR ERVL -20 401 7 * 1697 275 73 14 chr9 32441425 32442066 -85420561 - MER97c DNA MER1_type? -407 683 5 22 0 0 0 chr9 32442431 32442453 -85420174 + AT_rich Low_complexity Low_complexity 1 22 0 491 259 76 6 chr9 32443501 32444152 -85418475 - L1MB8 LINE L1 -56 6122 5401 195 283 152 28 chr9 32444543 32444688 -85417939 - L3 LINE CR1 -79 1498 1336 256 339 107 36 chr9 32444935 32445159 -85417468 - MIR SINE MIR -3 259 20 189 0 0 0 chr9 32447265 32447286 -85415341 + (TG)n Simple_repeat Simple_repeat 2 22 0 1016 218 0 15 chr9 32447303 32447505 -85415122 + Tigger3(Golem) DNA MER2_type 3 201 -2828 25 65 0 0 chr9 32447507 32447553 -85415074 + AT_rich Low_complexity Low_complexity 1 46 0 2846 138 69 11 chr9 32447643 32447895 -85414732 + Tigger3(Golem) DNA MER2_type 2453 2689 -340 2108 143 40 3 chr9 32447895 32448246 -85414381 + THE1B LTR MaLR 1 364 0 2846 138 69 11 chr9 32448246 32448516 -85414111 + Tigger3(Golem) DNA MER2_type 2689 3005 -24 189 0 0 0 chr9 32451019 32451040 -85411587 + (A)n Simple_repeat Simple_repeat 1 21 0 1694 129 39 70 chr9 32451324 32451711 -85410916 - THE1C LTR MaLR 0 375 1 302 179 0 15 chr9 32453185 32453252 -85409375 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 215 232 18 0 chr9 32453648 32453704 -85408923 + GA-rich Low_complexity Low_complexity 3 59 0 22 0 0 0 chr9 32454304 32454326 -85408301 + AT_rich Low_complexity Low_complexity 1 22 0 887 243 61 22 chr9 32454892 32455253 -85407374 - LTR52 LTR ERVL -4 417 1 1370 271 69 73 chr9 32457043 32457074 -85405553 + L1MD1 LINE L1 46 76 -6464 1327 182 4 4 chr9 32457074 32457310 -85405317 + MER46A DNA MER2_type 1 236 0 1370 271 69 73 chr9 32457310 32457945 -85404682 + L1MD1 LINE L1 76 709 -5831 2347 182 29 17 chr9 32457974 32458453 -85404174 + L1MA7 LINE L1 5513 5997 -294 1787 256 22 56 chr9 32458450 32459178 -85403449 + L1MD1 LINE L1 4212 4914 -1626 * 624 232 47 50 chr9 32459191 32459407 -85403220 - MLT1D LTR MaLR -237 230 23 3756 187 26 50 chr9 32459416 32460303 -85402324 + L1MD1 LINE L1 5751 6616 -20 22 35 0 0 chr9 32460308 32460337 -85402290 + AT_rich Low_complexity Low_complexity 1 29 0 326 290 23 69 chr9 32461015 32461146 -85401481 + MIR SINE MIR 99 223 -39 214 330 31 62 chr9 32461332 32461526 -85401101 + L2 LINE L2 2725 2912 -402 217 293 154 41 chr9 32461750 32461873 -85400754 + L2 LINE L2 3136 3272 0 186 274 157 0 chr9 32462078 32462129 -85400498 + L3 LINE CR1 1159 1217 -360 939 168 33 39 chr9 32465107 32465544 -85397083 - MLT1D LTR MaLR -2 503 3 358 267 114 15 chr9 32465927 32466058 -85396569 + MIR SINE MIR 80 223 -39 203 309 174 29 chr9 32466606 32466813 -85395814 - MIR SINE MIR -11 251 15 35 24 0 0 chr9 32467313 32467355 -85395272 + AT_rich Low_complexity Low_complexity 1 42 0 727 242 17 48 chr9 32468178 32468409 -85394218 + MLT1B LTR MaLR 3 226 -164 653 234 59 17 chr9 32468418 32468689 -85393938 - MER52A LTR ERV1 -992 763 1 3082 254 76 12 chr9 32468790 32470957 -85391670 - L1MB7 LINE L1 -10 6672 4363 1522 172 38 78 chr9 32470971 32471366 -85391261 - MLT1B LTR MaLR -11 379 1 1259 285 18 20 chr9 32471371 32471872 -85390755 - L1MB7 LINE L1 -2291 4353 3854 6023 142 27 37 chr9 32471886 32472213 -85390414 - L1MA1 LINE L1 0 6302 5973 330 45 0 0 chr9 32472213 32472257 -85390370 + (TG)n Simple_repeat Simple_repeat 1 44 0 276 197 33 0 chr9 32472257 32472318 -85390309 - AluJ/FRAM SINE Alu -23 279 217 6023 142 27 37 chr9 32472318 32474074 -85388553 - L1MA1 LINE L1 -327 5975 4176 216 67 0 0 chr9 32474076 32474106 -85388521 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1275 257 88 24 chr9 32474109 32474203 -85388424 - L1MB7 LINE L1 -2827 3817 3730 2216 108 7 0 chr9 32474203 32474509 -85388118 + AluSp SINE Alu 1 308 -5 1275 257 88 24 chr9 32474509 32475134 -85387493 - L1MB7 LINE L1 -2914 3730 3052 562 307 35 29 chr9 32475136 32475476 -85387151 - L1MB7 LINE L1 -5636 906 525 23 0 0 0 chr9 32475494 32475517 -85387110 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr9 32475635 32475665 -85386962 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr9 32475915 32475946 -85386681 + AT_rich Low_complexity Low_complexity 1 31 0 392 188 0 0 chr9 32476048 32476112 -85386515 + AluS SINE Alu 1 64 -236 824 204 0 0 chr9 32476150 32476302 -85386325 + AluSg/x SINE Alu 145 296 -14 25 31 0 0 chr9 32476369 32476401 -85386226 + AT_rich Low_complexity Low_complexity 1 32 0 28 29 0 0 chr9 32476497 32476532 -85386095 + AT_rich Low_complexity Low_complexity 1 35 0 186 171 0 0 chr9 32477228 32477269 -85385358 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 57 0 0 chr9 32477285 32477320 -85385307 + AT_rich Low_complexity Low_complexity 1 35 0 715 264 66 98 chr9 32477389 32477896 -85384731 + L1ME3A LINE L1 4927 5449 -721 1937 198 23 26 chr9 32477896 32478325 -85384302 + MSTB1 LTR MaLR 3 430 -2 715 264 66 98 chr9 32478325 32478683 -85383944 + L1ME3A LINE L1 5449 5758 -412 920 174 10 24 chr9 32478683 32478890 -85383737 + L1MA7 LINE L1 6082 6285 -6 715 264 66 98 chr9 32478890 32479043 -85383584 + L1ME3A LINE L1 5758 5914 -256 244 264 33 22 chr9 32479087 32479178 -85383449 + L1ME3A LINE L1 6053 6144 -26 3501 204 52 20 chr9 32480841 32481935 -85380692 + L1MB7 LINE L1 4890 6167 -17 1638 63 0 0 chr9 32481945 32482152 -85380475 - L1PA5 LINE L1 -1 6153 5947 41986 58 6 1 chr9 32482152 32487832 -85374795 - L1P2 LINE L1 -438 5716 11 259 236 106 56 chr9 32487863 32487951 -85374676 + L1MC5 LINE L1 5812 5894 -1914 3151 163 20 21 chr9 32487951 32488557 -85374070 + MER6A DNA MER2_type 1 605 0 259 236 106 56 chr9 32488557 32488629 -85373998 + L1MC5 LINE L1 5894 5980 -1828 2081 102 65 0 chr9 32488721 32489014 -85373613 + AluSq SINE Alu 2 313 0 25 51 0 0 chr9 32489053 32489092 -85373535 + AT_rich Low_complexity Low_complexity 1 39 0 601 220 140 35 chr9 32490053 32490325 -85372302 + L1MC5 LINE L1 6593 6893 -915 407 340 41 16 chr9 32490618 32490812 -85371815 + MIR3 SINE MIR 6 204 -4 3087 97 9 14 chr9 32490860 32491302 -85371325 - MLT2A1 LTR ERVL -3 441 2 21 57 0 0 chr9 32491620 32491655 -85370972 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 32491752 32491782 -85370845 + AT_rich Low_complexity Low_complexity 1 30 0 39 50 0 0 chr9 32491888 32491948 -85370679 + AT_rich Low_complexity Low_complexity 1 60 0 681 194 16 0 chr9 32492504 32492633 -85369994 + FLAM_C SINE Alu 3 133 0 200 224 0 17 chr9 32492978 32493036 -85369591 + A-rich Low_complexity Low_complexity 4 60 0 273 333 31 38 chr9 32493093 32493252 -85369375 - MIR SINE MIR -32 230 73 4227 138 39 35 chr9 32495496 32496267 -85366360 + Tigger1 DNA MER2_type 528 1301 -1117 1124 176 27 0 chr9 32496304 32496525 -85366102 + Tigger1 DNA MER2_type 2190 2416 -2 1513 228 84 97 chr9 32496531 32497461 -85365166 - MER57A-int LTR ERV1 -2156 2780 1863 428 206 19 65 chr9 32497531 32497638 -85364989 - MER34 LTR ERV1 -305 237 136 733 213 134 4 chr9 32497782 32498059 -85364568 - MER57A-int LTR ERV1 -3481 1455 1143 271 175 0 63 chr9 32498204 32498267 -85364360 - MER57A-int LTR ERV1 -3996 940 882 808 251 154 27 chr9 32498604 32498863 -85363764 - MER57A-int LTR ERV1 -7243 294 3 701 221 135 109 chr9 32498866 32499259 -85363368 - MER57A LTR ERV1 0 403 1 251 256 209 0 chr9 32499606 32499692 -85362935 - L2 LINE L2 0 3272 3169 25 31 0 0 chr9 32500323 32500355 -85362272 + AT_rich Low_complexity Low_complexity 1 32 0 723 167 8 23 chr9 32501124 32501256 -85361371 - FLAM_C SINE Alu -13 130 1 201 94 0 0 chr9 32502108 32502140 -85360487 + (TC)n Simple_repeat Simple_repeat 1 32 0 412 345 107 11 chr9 32502336 32502597 -85360030 + L2 LINE L2 2565 2850 -464 270 294 40 16 chr9 32502854 32502980 -85359647 - L1M4 LINE L1 -5361 1181 1053 21 0 0 0 chr9 32503180 32503201 -85359426 + AT_rich Low_complexity Low_complexity 1 21 0 276 187 27 13 chr9 32503206 32503231 -85359396 - L1MDa LINE L1 -3923 2617 2594 2159 113 0 0 chr9 32503231 32503531 -85359096 - AluSx SINE Alu -12 300 1 276 187 27 13 chr9 32503531 32503580 -85359047 - L1MDa LINE L1 -3946 2594 2542 2050 133 19 27 chr9 32503596 32503964 -85358663 - L1MA2 LINE L1 0 6304 5940 305 179 103 0 chr9 32503965 32504043 -85358584 - L1MDa LINE L1 -3984 2556 2471 2678 151 16 0 chr9 32504056 32504507 -85358120 - L1PA13 LINE L1 -11 6152 5695 436 115 0 0 chr9 32506247 32506308 -85356319 - L1PA13 LINE L1 -252 5911 5851 2148 96 17 0 chr9 32506338 32506630 -85355997 + AluSp SINE Alu 1 297 -16 270 0 0 0 chr9 32506630 32506660 -85355967 + (TA)n Simple_repeat Simple_repeat 2 31 0 6885 142 17 21 chr9 32507389 32509250 -85353377 + L1MA2 LINE L1 4450 6304 0 314 202 109 62 chr9 32509259 32509452 -85353175 + L1ME LINE L1 681 882 -5188 1720 174 6 25 chr9 32509646 32509963 -85352664 + AluJo SINE Alu 2 312 0 256 279 36 103 chr9 32510512 32510677 -85351950 + MLT1G1-int LTR MaLR 1034 1187 -184 251 275 99 0 chr9 32510853 32510944 -85351683 + MLT1G1 LTR MaLR 2 101 -494 1358 67 0 6 chr9 32512135 32512314 -85350313 + AluY SINE Alu 132 309 -2 822 318 102 11 chr9 32512652 32513014 -85349613 + MLT1G1 LTR MaLR 151 545 -50 42 36 0 0 chr9 32514174 32514230 -85348397 + AT_rich Low_complexity Low_complexity 1 56 0 296 181 96 0 chr9 32515257 32515340 -85347287 + L1MC4 LINE L1 6615 6705 -1337 250 143 16 63 chr9 32516664 32516727 -85345900 + L1MC4 LINE L1 6648 6707 -1335 21 0 0 0 chr9 32516750 32516771 -85345856 + AT_rich Low_complexity Low_complexity 1 21 0 2088 116 0 10 chr9 32518132 32518424 -85344203 + AluSx SINE Alu 3 291 -21 36 77 0 0 chr9 32518575 32518653 -85343974 + AT_rich Low_complexity Low_complexity 1 78 0 258 239 14 14 chr9 32518719 32518790 -85343837 + MIR SINE MIR 188 258 -4 22 0 0 0 chr9 32518874 32518896 -85343731 + AT_rich Low_complexity Low_complexity 1 22 0 216 171 49 0 chr9 32519032 32519084 -85343543 + (TATG)n Simple_repeat Simple_repeat 1 54 0 1981 122 0 7 chr9 32519208 32519527 -85343100 + AluSq SINE Alu 1 317 0 502 302 55 19 chr9 32519591 32519902 -85342725 + L1M4 LINE L1 4018 4339 -1807 316 220 77 11 chr9 32519902 32519993 -85342634 - MER58B DNA MER1_type -5 336 240 21 0 0 0 chr9 32521659 32521680 -85340947 + AT_rich Low_complexity Low_complexity 1 21 0 588 207 6 22 chr9 32524831 32525010 -85337617 + CT-rich Low_complexity Low_complexity 3 178 0 372 22 0 0 chr9 32525557 32525602 -85337025 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr9 32525785 32525806 -85336821 + AT_rich Low_complexity Low_complexity 1 21 0 1337 219 39 28 chr9 32525942 32526303 -85336324 + MLT1A1 LTR MaLR 1 365 0 778 309 93 30 chr9 32526424 32527133 -85335494 + L2 LINE L2 2525 3280 -33 21 0 0 0 chr9 32528243 32528264 -85334363 + AT_rich Low_complexity Low_complexity 1 21 0 1763 249 5 13 chr9 32528315 32528713 -85333914 + MSTD LTR MaLR 2 396 0 2511 245 10 7 chr9 32528715 32529310 -85333317 + MSTD-int LTR MaLR 2 598 -1137 1824 42 5 0 chr9 32529311 32529524 -85333103 + AluY SINE Alu 69 282 -29 961 267 82 98 chr9 32529634 32530124 -85332503 + MSTD-int LTR MaLR 604 1085 -650 1710 212 89 31 chr9 32530145 32530663 -85331964 + LTR10A LTR ERV1 1 548 -61 2527 248 40 2 chr9 32530683 32531240 -85331387 + MSTD-int LTR MaLR 1107 1684 -51 1706 204 15 60 chr9 32531296 32531698 -85330929 + MSTD LTR MaLR 13 396 0 24 0 0 0 chr9 32531912 32531936 -85330691 + AT_rich Low_complexity Low_complexity 1 24 0 2620 150 62 39 chr9 32532470 32532570 -85330057 - LTR59 LTR ERV1 -18 579 483 208 0 62 0 chr9 32532570 32532602 -85330025 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2620 150 62 39 chr9 32532602 32533061 -85329566 - LTR59 LTR ERV1 -114 483 7 1486 101 0 0 chr9 32533868 32534067 -85328560 + AluSg/x SINE Alu 106 304 -8 762 219 87 21 chr9 32534102 32534452 -85328175 - L1MB4 LINE L1 -1 6179 5783 466 204 0 0 chr9 32534486 32534579 -85328048 + L1M2 LINE L1 2356 2448 -4401 38 0 0 0 chr9 32534579 32534617 -85328010 + AT_rich Low_complexity Low_complexity 1 38 0 3178 191 38 73 chr9 32534617 32535362 -85327265 + L1M2 LINE L1 2442 3204 -3644 555 152 0 20 chr9 32535362 32535453 -85327174 + FLAM_A SINE Alu 32 122 -189 180 0 0 0 chr9 32535453 32535473 -85327154 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 3178 191 38 73 chr9 32535480 32536191 -85326436 + L1M2 LINE L1 3204 3938 -2910 958 246 126 9 chr9 32536196 32536461 -85326166 - L1M4c LINE L1 -5326 1216 926 243 0 0 0 chr9 32536461 32536488 -85326139 + (TG)n Simple_repeat Simple_repeat 2 28 0 958 246 126 9 chr9 32536488 32536599 -85326028 - L1M4c LINE L1 -5616 926 829 820 314 82 39 chr9 32536606 32537274 -85325353 - L1M4c LINE L1 -5844 698 2 438 20 0 0 chr9 32537577 32537628 -85324999 + (TTA)n Simple_repeat Simple_repeat 1 51 0 320 277 12 24 chr9 32538458 32538541 -85324086 - MER20B DNA MER1_type -610 173 92 710 314 53 62 chr9 32539100 32539590 -85323037 - MLT1H LTR MaLR -2 547 1 216 200 0 0 chr9 32540702 32540772 -85321855 + T-rich Low_complexity Low_complexity 1 70 0 1366 218 38 51 chr9 32540795 32541190 -85321437 + MLT1B LTR MaLR 1 390 0 550 304 6 0 chr9 32541355 32541513 -85321114 + FRAM SINE Alu 3 161 -15 188 277 12 48 chr9 32543061 32543144 -85319483 - MIR SINE MIR -107 155 76 29 0 0 0 chr9 32543200 32543229 -85319398 + AT_rich Low_complexity Low_complexity 1 29 0 260 259 24 24 chr9 32543237 32543322 -85319305 + L2 LINE L2 2665 2749 -565 2110 99 7 0 chr9 32543322 32543606 -85319021 + AluSg SINE Alu 1 286 -24 207 0 0 0 chr9 32543610 32543633 -85318994 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 281 310 28 7 chr9 32544394 32544536 -85318091 + L1M3de LINE L1 1755 1899 -4754 3449 76 0 2 chr9 32544611 32545070 -85317557 + L1PA7 LINE L1 5695 6152 -2 237 269 41 7 chr9 32545564 32545709 -85316918 + L1MEc LINE L1 2093 2242 -4154 6040 74 5 16 chr9 32546276 32547103 -85315524 + L1PA6 LINE L1 5332 6149 -5 237 255 55 21 chr9 32547597 32547742 -85314885 + L1MEc LINE L1 2093 2242 -4154 432 326 85 7 chr9 32548197 32548773 -85313854 + L1MCc LINE L1 1263 1890 -4889 27 29 0 0 chr9 32548812 32548846 -85313781 + AT_rich Low_complexity Low_complexity 1 34 0 1002 342 53 23 chr9 32549517 32550087 -85312540 + L1PA16 LINE L1 788 1374 -6200 280 348 33 7 chr9 32550076 32550367 -85312260 + L1PA16 LINE L1 2075 2298 -5276 * 4979 252 36 24 chr9 32550586 32553372 -85309255 + L1PA16 LINE L1 2182 4962 -2622 * 42558 32 21 1 chr9 32553368 32559436 -85303191 + L1PA2 LINE L1 1 6191 0 451 191 95 48 chr9 32559441 32559588 -85303039 - MER112 DNA MER1_type -101 159 6 29 47 0 0 chr9 32559712 32559755 -85302872 + AT_rich Low_complexity Low_complexity 1 43 0 276 30 0 0 chr9 32559889 32559922 -85302705 + (A)n Simple_repeat Simple_repeat 1 33 0 7567 211 21 14 chr9 32559923 32561908 -85300719 + L1PA16 LINE L1 4949 6933 -671 2130 175 44 18 chr9 32561908 32562340 -85300287 + L1PA16 LINE L1 7143 7588 -16 2951 222 48 7 chr9 32562351 32563085 -85299542 - L1MB2 LINE L1 -31 6140 5377 342 0 0 0 chr9 32563193 32563231 -85299396 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 305 221 39 chr9 32564020 32564174 -85298453 + MIR SINE MIR 47 228 -34 25 0 0 0 chr9 32564511 32564536 -85298091 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr9 32564906 32564937 -85297690 + AT_rich Low_complexity Low_complexity 1 31 0 214 208 28 28 chr9 32565512 32565584 -85297043 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 57 0 0 chr9 32565880 32565915 -85296712 + AT_rich Low_complexity Low_complexity 1 35 0 264 290 49 33 chr9 32566428 32566452 -85296175 + L1MEd LINE L1 1042 1064 -5055 249 33 0 0 chr9 32566452 32566482 -85296145 + (TA)n Simple_repeat Simple_repeat 1 30 0 264 290 49 33 chr9 32566482 32566640 -85295987 + L1MEd LINE L1 1064 1227 -4892 286 198 22 99 chr9 32567611 32567702 -85294925 + MLT1J LTR MaLR 388 471 -40 29 28 0 0 chr9 32568347 32568383 -85294244 + AT_rich Low_complexity Low_complexity 1 36 0 1858 151 27 3 chr9 32569204 32569502 -85293125 - AluJo SINE Alu -7 305 1 810 340 98 14 chr9 32569589 32570299 -85292328 - L2 LINE L2 -10 3303 2534 2073 109 6 32 chr9 32570724 32571037 -85291590 - AluSp SINE Alu -6 307 3 31 0 0 0 chr9 32571043 32571074 -85291553 + AT_rich Low_complexity Low_complexity 1 31 0 266 349 24 8 chr9 32571612 32571738 -85290889 + MER96 DNA MER1_type? 45 172 -3 317 87 0 0 chr9 32571937 32571983 -85290644 + MADE1 DNA Mariner 1 46 -34 339 22 22 0 chr9 32572023 32572068 -85290559 + MADE1 DNA Mariner 35 80 0 366 325 49 6 chr9 32572076 32572239 -85290388 + MIR SINE MIR 92 261 -1 22 0 0 0 chr9 32572450 32572472 -85290155 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 32572607 32572639 -85289988 + AT_rich Low_complexity Low_complexity 1 32 0 932 268 127 63 chr9 32574475 32575299 -85287328 + HAL1b LINE L1 440 1316 -32 822 146 15 0 chr9 32575390 32575520 -85287107 + AluJo/FLAM SINE Alu 1 132 -180 366 254 16 71 chr9 32575522 32575648 -85286979 + AluSc SINE Alu 181 299 0 21 36 0 0 chr9 32575891 32575919 -85286708 + AT_rich Low_complexity Low_complexity 1 28 0 231 88 0 0 chr9 32576422 32576456 -85286171 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 291 233 108 97 chr9 32576898 32577074 -85285553 + MER104 DNA Tc2 1 178 -2 195 42 0 0 chr9 32578154 32578178 -85284449 + (TTG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr9 32578649 32578669 -85283958 + (TA)n Simple_repeat Simple_repeat 1 20 0 26 64 0 0 chr9 32578747 32578794 -85283833 + AT_rich Low_complexity Low_complexity 1 47 0 679 214 0 0 chr9 32579380 32579511 -85283116 - MER52A LTR ERV1 -208 1547 1417 3768 165 25 3 chr9 32579778 32580420 -85282207 - MER52A LTR ERV1 0 1755 1100 1749 234 51 2 chr9 32580541 32580995 -85281632 - L1MB1 LINE L1 -362 5827 5352 342 0 0 0 chr9 32581083 32581121 -85281506 + (TG)n Simple_repeat Simple_repeat 1 38 0 198 305 221 39 chr9 32581910 32582064 -85280563 + MIR SINE MIR 47 228 -34 25 0 0 0 chr9 32582401 32582426 -85280201 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr9 32582796 32582827 -85279800 + AT_rich Low_complexity Low_complexity 1 31 0 214 208 28 28 chr9 32583402 32583474 -85279153 + (TA)n Simple_repeat Simple_repeat 2 73 0 21 57 0 0 chr9 32583770 32583805 -85278822 + AT_rich Low_complexity Low_complexity 1 35 0 264 290 49 33 chr9 32584318 32584342 -85278285 + L1MEd LINE L1 1042 1064 -5055 249 33 0 0 chr9 32584342 32584372 -85278255 + (TA)n Simple_repeat Simple_repeat 1 30 0 264 290 49 33 chr9 32584372 32584530 -85278097 + L1MEd LINE L1 1064 1227 -4892 255 198 23 105 chr9 32585502 32585588 -85277039 + MLT1J LTR MaLR 388 466 -45 29 28 0 0 chr9 32586234 32586270 -85276357 + AT_rich Low_complexity Low_complexity 1 36 0 1858 151 27 3 chr9 32587091 32587389 -85275238 - AluJo SINE Alu -7 305 1 810 340 98 14 chr9 32587476 32588186 -85274441 - L2 LINE L2 -10 3303 2534 2057 112 6 32 chr9 32588611 32588924 -85273703 - AluSp SINE Alu -6 307 3 31 0 0 0 chr9 32588930 32588961 -85273666 + AT_rich Low_complexity Low_complexity 1 31 0 266 349 24 8 chr9 32589499 32589625 -85273002 + MER96 DNA MER1_type? 45 172 -3 317 87 0 0 chr9 32589824 32589870 -85272757 + MADE1 DNA Mariner 1 46 -34 339 22 22 0 chr9 32589910 32589955 -85272672 + MADE1 DNA Mariner 35 80 0 366 325 49 6 chr9 32589963 32590126 -85272501 + MIR SINE MIR 92 261 -1 22 0 0 0 chr9 32590337 32590359 -85272268 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 32590494 32590526 -85272101 + AT_rich Low_complexity Low_complexity 1 32 0 932 268 127 63 chr9 32592362 32593186 -85269441 + HAL1b LINE L1 440 1316 -32 822 146 15 0 chr9 32593277 32593407 -85269220 + AluJo/FLAM SINE Alu 1 132 -180 366 254 16 71 chr9 32593409 32593535 -85269092 + AluSc SINE Alu 181 299 0 21 36 0 0 chr9 32593778 32593806 -85268821 + AT_rich Low_complexity Low_complexity 1 28 0 231 88 0 0 chr9 32594309 32594343 -85268284 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 291 233 108 97 chr9 32594785 32594961 -85267666 + MER104 DNA Tc2 1 178 -2 195 42 0 0 chr9 32596041 32596065 -85266562 + (TTG)n Simple_repeat Simple_repeat 1 24 0 679 214 0 0 chr9 32596421 32596552 -85266075 - MER52A LTR ERV1 -208 1547 1417 7377 189 133 6 chr9 32596819 32598377 -85264250 - MER52A LTR ERV1 0 1755 1 12885 61 3 18 chr9 32598962 32601429 -85261198 + HERVH LTR ERV1 5283 7713 0 3464 60 2 2 chr9 32601429 32601877 -85260750 + LTR7 LTR ERV1 1 448 -2 3817 233 54 30 chr9 32601879 32602971 -85259656 - MER52A LTR ERV1 -560 1195 1 400 246 64 0 chr9 32603000 32603110 -85259517 + MIR SINE MIR 112 228 -34 1643 207 19 16 chr9 32604942 32605265 -85257362 - MLT1A1 LTR MaLR -41 324 1 215 211 0 0 chr9 32605265 32605303 -85257324 + (ATG)n Simple_repeat Simple_repeat 2 39 0 263 264 14 0 chr9 32605318 32605390 -85257237 + L1MA9 LINE L1 6087 6159 -153 564 278 67 16 chr9 32605430 32605624 -85257003 - MIR SINE MIR -57 205 2 198 71 0 0 chr9 32605876 32605904 -85256723 + (CA)n Simple_repeat Simple_repeat 1 28 0 305 240 146 0 chr9 32605966 32606062 -85256565 - L1ME4a LINE L1 -260 5861 5752 340 358 19 0 chr9 32606076 32606238 -85256389 - L1ME4a LINE L1 -412 5709 5545 230 259 17 43 chr9 32606309 32606425 -85256202 - L1ME4a LINE L1 -681 5440 5328 286 322 15 20 chr9 32606882 32607081 -85255546 - L1MC4a LINE L1 -1909 6293 6096 1793 181 29 18 chr9 32607727 32608070 -85254557 + MER7A DNA MER2_type 1 345 -1 22 35 0 0 chr9 32608187 32608216 -85254411 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr9 32608463 32608512 -85254115 + AT_rich Low_complexity Low_complexity 1 49 0 52 0 0 0 chr9 32609074 32609126 -85253501 + AT_rich Low_complexity Low_complexity 1 52 0 7458 138 31 7 chr9 32609732 32611001 -85251626 - HSMAR2 DNA Mariner -1 1301 2 956 282 79 10 chr9 32611259 32611755 -85250872 - L1MC4a LINE L1 -1523 5017 4488 467 91 0 0 chr9 32611838 32611904 -85250723 - AluSp/q SINE Alu -12 301 236 1125 146 0 11 chr9 32611904 32612089 -85250538 - AluSx SINE Alu -127 185 3 696 334 73 14 chr9 32612099 32612824 -85249803 - L1MC4a LINE L1 -2300 4240 3473 468 226 83 11 chr9 32612834 32613015 -85249612 - L1MC4a LINE L1 -4032 2689 2496 343 310 66 30 chr9 32613268 32613539 -85249088 - L1MC4a LINE L1 -4577 2144 1864 513 265 80 103 chr9 32613587 32614013 -85248614 - L1MEc LINE L1 -4832 1727 1293 1379 142 13 13 chr9 32616249 32616488 -85246139 + L1PA16 LINE L1 5923 6161 -5 1979 135 17 0 chr9 32617340 32617629 -85244998 + AluSx SINE Alu 1 294 -18 673 218 14 51 chr9 32617634 32617850 -85244777 + L1MA10 LINE L1 6116 6323 -11 287 272 10 29 chr9 32619402 32619505 -85243122 + (CTA)n Simple_repeat Simple_repeat 1 101 0 213 39 0 0 chr9 32619892 32619918 -85242709 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 1808 166 10 3 chr9 32619918 32620219 -85242408 - AluSq SINE Alu -10 303 1 2871 6 0 0 chr9 32620613 32620927 -85241700 - AluYb8 SINE Alu -4 314 1 31 0 0 0 chr9 32620938 32620969 -85241658 + AT_rich Low_complexity Low_complexity 1 31 0 2414 93 0 0 chr9 32621120 32621454 -85241173 + L1PA7 LINE L1 5821 6154 0 28 48 0 0 chr9 32621619 32621661 -85240966 + AT_rich Low_complexity Low_complexity 1 42 0 304 313 56 14 chr9 32621816 32621960 -85240667 + MIR SINE MIR 76 225 -37 256 273 131 40 chr9 32623542 32623641 -85238986 - MIR SINE MIR -71 137 30 21 36 0 0 chr9 32624583 32624611 -85238016 + AT_rich Low_complexity Low_complexity 1 28 0 2165 111 51 20 chr9 32625315 32625668 -85236959 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr9 32627401 32627422 -85235205 + AT_rich Low_complexity Low_complexity 1 21 0 243 88 0 0 chr9 32627505 32627539 -85235088 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 21 0 0 0 chr9 32628545 32628566 -85234061 + AT_rich Low_complexity Low_complexity 1 21 0 1523 144 22 11 chr9 32629173 32629444 -85233183 - AluSg SINE Alu -19 291 18 337 307 48 0 chr9 32629571 32629763 -85232864 + L1MC/D LINE L1 5616 5820 -301 191 86 0 29 chr9 32630161 32630196 -85232431 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 2348 56 0 0 chr9 32630585 32630911 -85231716 + AluY SINE Alu 1 326 0 201 320 110 10 chr9 32631655 32631717 -85230910 - MIR3 SINE MIR -2 206 152 1006 80 0 0 chr9 32631717 32631854 -85230773 - L1PA7 LINE L1 -3 6151 6015 201 320 110 10 chr9 32631854 32631891 -85230736 - MIR3 SINE MIR -56 152 97 225 192 41 27 chr9 32632674 32632747 -85229880 + CT-rich Low_complexity Low_complexity 1 74 0 783 239 20 0 chr9 32633900 32634101 -85228526 + L1MC/D LINE L1 4945 5149 -997 510 228 110 0 chr9 32634650 32634786 -85227841 + MLT1I LTR MaLR 245 395 -14 303 335 58 40 chr9 32635321 32635599 -85227028 + L1MC/D LINE L1 5314 5596 -2212 1121 66 0 0 chr9 32635748 32635900 -85226727 + L1PA4 LINE L1 6004 6155 0 1568 184 7 19 chr9 32636024 32636334 -85226293 + AluJo SINE Alu 1 306 -6 559 333 95 41 chr9 32636348 32636917 -85225710 - L2 LINE L2 -168 3145 2551 4792 191 27 5 chr9 32637428 32638654 -85223973 - L1MA7 LINE L1 0 6291 5036 7301 35 1 15 chr9 32640686 32641846 -85220781 - L1PA5 LINE L1 0 6154 5022 2340 48 41 0 chr9 32641846 32642139 -85220488 - AluY SINE Alu -5 306 2 7301 35 1 15 chr9 32642139 32642667 -85219960 - L1PA5 LINE L1 -1132 5022 4488 11245 41 9 0 chr9 32642667 32644076 -85218551 + L1PA5 LINE L1 3081 4502 -1644 2159 112 3 0 chr9 32644188 32644514 -85218113 + AluSp SINE Alu 1 327 0 2119 119 0 3 chr9 32645886 32646196 -85216431 - AluSg SINE Alu -1 309 1 511 316 119 50 chr9 32646821 32647316 -85215311 + L2 LINE L2 2661 3204 -109 1804 235 18 35 chr9 32647316 32647830 -85214797 + MLT1D LTR MaLR 1 505 0 511 316 119 50 chr9 32647830 32647938 -85214689 + L2 LINE L2 3204 3303 -10 23 54 0 0 chr9 32648004 32648041 -85214586 + AT_rich Low_complexity Low_complexity 1 37 0 719 240 31 15 chr9 32648181 32648377 -85214250 - L1MC5 LINE L1 -61 7900 7702 306 248 20 89 chr9 32648545 32648646 -85213981 + MLT1H LTR MaLR 241 334 -215 262 210 55 47 chr9 32648680 32648786 -85213841 + MLT1H LTR MaLR 437 582 -8 387 279 0 0 chr9 32648864 32648986 -85213641 - MER69 DNA AcHobo -7 2519 2398 3213 74 0 2 chr9 32649884 32650317 -85212310 - L1PA7 LINE L1 -2 6152 5721 310 312 11 0 chr9 32651203 32651296 -85211331 - L1MC4 LINE L1 -1337 6705 6612 267 210 48 0 chr9 32651300 32651362 -85211265 + (CATATA)n Simple_repeat Simple_repeat 3 67 0 264 232 98 0 chr9 32651362 32651444 -85211183 + L1MC4 LINE L1 6614 6703 -1339 331 276 85 56 chr9 32653210 32653529 -85209098 - L1M4 LINE L1 -1938 4208 3881 496 333 46 31 chr9 32653675 32654065 -85208562 - L1M4 LINE L1 -2422 3724 3329 504 250 0 0 chr9 32654130 32654242 -85208385 - FAM SINE Alu -37 148 37 361 265 26 0 chr9 32654517 32654634 -85207993 - L1M4 LINE L1 -3329 2817 2698 27 62 0 0 chr9 32655639 32655687 -85206940 + AT_rich Low_complexity Low_complexity 1 48 0 333 261 87 0 chr9 32657058 32657173 -85205454 - L2 LINE L2 -12 3301 3177 189 273 193 27 chr9 32657189 32657339 -85205288 + L2 LINE L2 3011 3185 -128 514 286 156 38 chr9 32658810 32659285 -85203342 - L2 LINE L2 -5 3308 2780 2263 70 23 0 chr9 32659347 32659646 -85202981 - AluY SINE Alu -5 306 1 449 336 94 62 chr9 32660314 32661005 -85201622 - L3 LINE CR1 -575 1002 290 350 367 38 22 chr9 32661881 32662194 -85200433 - L1ME4a LINE L1 -159 5962 5645 702 162 8 0 chr9 32662544 32662661 -85199966 + AluJb SINE Alu 165 282 -30 2395 60 7 0 chr9 32662796 32663097 -85199530 - AluY SINE Alu -8 303 1 25 0 0 0 chr9 32663317 32663342 -85199285 + AT_rich Low_complexity Low_complexity 1 25 0 249 188 16 31 chr9 32663938 32664002 -85198625 + GA-rich Low_complexity Low_complexity 3 65 0 305 289 133 23 chr9 32664429 32664557 -85198070 + L2 LINE L2 3171 3312 -1 5351 154 47 3 chr9 32665163 32666704 -85195923 - L1MA4 LINE L1 -6 6294 4673 239 0 32 0 chr9 32666704 32666735 -85195892 + (TTG)n Simple_repeat Simple_repeat 2 33 0 5351 154 47 3 chr9 32666735 32666874 -85195753 - L1MA4 LINE L1 -1627 4673 4542 187 336 172 8 chr9 32667352 32667474 -85195153 + MIR SINE MIR 32 173 -89 2397 73 3 0 chr9 32667485 32667788 -85194839 - AluY SINE Alu -6 305 2 240 111 0 0 chr9 32667803 32667839 -85194788 + (A)n Simple_repeat Simple_repeat 1 36 0 1893 82 30 26 chr9 32668143 32668410 -85194217 + AluSg SINE Alu 35 302 -8 2358 192 25 40 chr9 32668659 32669186 -85193441 - MLT2B1 LTR ERVL 0 520 2 4087 125 0 28 chr9 32669818 32670472 -85192155 + L1PA15 LINE L1 5526 6161 -4 346 259 43 79 chr9 32670847 32670986 -85191641 + L1ME LINE L1 37 170 -5900 1054 263 91 53 chr9 32670988 32671553 -85191074 - MLT1E1 LTR MaLR -7 647 1 267 345 12 48 chr9 32671650 32671818 -85190809 + L1ME LINE L1 254 415 -5655 * 1369 256 17 37 chr9 32671814 32672199 -85190428 - L1M4 LINE L1 -2266 3880 3502 2238 98 7 0 chr9 32672199 32672495 -85190132 + AluSg SINE Alu 1 298 -12 1369 256 17 37 chr9 32672495 32672515 -85190112 - L1M4 LINE L1 -2644 3502 3483 533 332 96 21 chr9 32672669 32673046 -85189581 - L1MEc LINE L1 -5963 433 29 2249 328 57 21 chr9 32673411 32674426 -85188201 + L2 LINE L2 38 1089 -2225 1995 196 39 5 chr9 32674443 32675053 -85187574 - Tigger7 DNA MER2_type -1777 710 2 525 319 98 0 chr9 32675054 32675217 -85187410 + L2 LINE L2 1061 1239 -2075 2073 307 94 23 chr9 32675438 32676515 -85186112 + L2 LINE L2 1897 3043 -270 5258 109 32 2 chr9 32676802 32677612 -85185015 - L1PA7 LINE L1 -1464 4682 3849 6593 73 10 1 chr9 32677613 32679066 -85183561 + L1PA7 LINE L1 4685 6154 0 23 0 0 0 chr9 32679147 32679170 -85183457 + AT_rich Low_complexity Low_complexity 1 23 0 281 375 52 2 chr9 32679442 32679597 -85183030 - MER5A DNA MER1_type 0 178 15 21 36 0 0 chr9 32680236 32680264 -85182363 + AT_rich Low_complexity Low_complexity 1 28 0 2231 106 10 0 chr9 32681104 32681407 -85181220 + AluSc SINE Alu 1 306 -3 186 43 0 0 chr9 32682429 32682452 -85180175 + (T)n Simple_repeat Simple_repeat 1 23 0 351 44 0 0 chr9 32682791 32682836 -85179791 + (TG)n Simple_repeat Simple_repeat 2 46 0 2247 97 0 7 chr9 32683090 32683388 -85179239 + AluSx SINE Alu 1 296 -16 265 365 83 0 chr9 32684541 32684686 -85177941 + L1ME LINE L1 12 168 -5902 405 173 39 167 chr9 32686165 32686321 -85176306 + LTR28 LTR ERV1 1 171 -289 2131 191 98 50 chr9 32686337 32686992 -85175635 + LTR28 LTR ERV1 121 819 -7 2085 125 0 0 chr9 32687640 32687927 -85174700 + AluSx SINE Alu 2 288 -24 799 302 56 32 chr9 32688386 32688948 -85173679 + MLT2E LTR ERVL 6 628 0 243 266 75 53 chr9 32689235 32689329 -85173298 - MER5A DNA MER1_type 0 189 94 2228 168 36 7 chr9 32689884 32690300 -85172327 - MSTA LTR MaLR 0 428 1 31 0 0 0 chr9 32690312 32690343 -85172284 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr9 32690435 32690481 -85172146 + AT_rich Low_complexity Low_complexity 1 46 0 316 346 66 15 chr9 32690569 32690705 -85171922 - MIR3 SINE MIR -64 144 2 700 207 122 0 chr9 32691174 32691362 -85171265 + MER33 DNA MER1_type 25 235 -89 1171 180 32 54 chr9 32691370 32691648 -85170979 - AluJb SINE Alu -19 293 22 25 0 0 0 chr9 32691959 32691984 -85170643 + AT_rich Low_complexity Low_complexity 1 25 0 316 239 7 7 chr9 32692050 32692188 -85170439 + (TA)n Simple_repeat Simple_repeat 2 139 0 260 224 45 0 chr9 32692399 32692466 -85170161 + Charlie1 DNA MER1_type 2687 2756 -5 22 35 0 0 chr9 32693419 32693448 -85169179 + AT_rich Low_complexity Low_complexity 1 29 0 206 258 52 62 chr9 32693926 32694023 -85168604 - L2 LINE L2 -6 3307 3212 549 111 55 17 chr9 32694655 32694949 -85167678 + (TA)n Simple_repeat Simple_repeat 1 305 0 209 156 0 62 chr9 32694950 32695014 -85167613 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 348 0 0 55 chr9 32695023 32695078 -85167549 + (TTAAA)n Simple_repeat Simple_repeat 1 52 0 871 200 10 34 chr9 32695082 32695287 -85167340 - L1MC3 LINE L1 -568 7217 7018 189 357 65 26 chr9 32695587 32695741 -85166886 + L3 LINE CR1 1374 1533 -44 871 200 10 34 chr9 32697105 32697310 -85165317 + L1MC3 LINE L1 7018 7217 -568 222 37 0 0 chr9 32697314 32697341 -85165286 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 39 0 0 0 chr9 32697341 32697380 -85165247 + AT_rich Low_complexity Low_complexity 1 39 0 395 106 81 0 chr9 32697381 32697541 -85165086 + (TA)n Simple_repeat Simple_repeat 1 173 0 328 131 65 7 chr9 32697556 32697709 -85164918 + (TA)n Simple_repeat Simple_repeat 1 162 0 571 244 8 0 chr9 32699550 32699677 -85162950 + Tigger3(Golem) DNA MER2_type 1 128 -2901 4632 155 25 27 chr9 32699679 32700436 -85162191 + Tigger3(Golem) DNA MER2_type 2117 2873 -156 1953 158 3 51 chr9 32700436 32700790 -85161837 - MER1B DNA MER1_type 0 337 1 4632 155 25 27 chr9 32700790 32700927 -85161700 + Tigger3(Golem) DNA MER2_type 2873 3009 -20 2715 211 27 11 chr9 32700934 32701488 -85161139 - MER52A LTR ERV1 -2 1753 1191 3535 51 2 2 chr9 32701488 32701936 -85160691 + LTR7 LTR ERV1 1 448 -2 5694 102 19 43 chr9 32701938 32702923 -85159704 + HERVH LTR ERV1 1 962 -6751 5660 119 0 12 chr9 32703023 32703917 -85158710 + HERVH LTR ERV1 2113 2995 -4718 931 133 7 0 chr9 32703896 32704046 -85158581 + HERVH LTR ERV1 3140 3290 -4423 * 8839 83 15 6 chr9 32704036 32705790 -85156837 + HERVH LTR ERV1 3492 5225 -1866 459 258 169 9 chr9 32756375 32756588 -85106039 - MIR SINE MIR -2 260 14 421 242 70 101 chr9 32757348 32757646 -85104981 + L2 LINE L2 2966 3254 -18 28 29 0 0 chr9 32758123 32758158 -85104469 + AT_rich Low_complexity Low_complexity 1 35 0 273 322 32 23 chr9 32758650 32758803 -85103824 - MIR SINE MIR -74 188 34 200 333 35 18 chr9 32759297 32759411 -85103216 + MIR3 SINE MIR 41 156 -52 1601 254 131 85 chr9 32759473 32760512 -85102115 + L1MC4a LINE L1 6721 7807 -1 193 257 29 14 chr9 32763741 32763811 -85098816 + L2 LINE L2 2932 3002 -270 593 323 10 0 chr9 32764403 32764601 -85098026 + MIR SINE MIR 8 207 -55 1165 234 194 14 chr9 32764718 32765085 -85097542 - MLT1J2 LTR MaLR -17 433 1 189 267 0 17 chr9 32766450 32766510 -85096117 + L2 LINE L2 3184 3242 -30 193 158 0 0 chr9 32768024 32768062 -85094565 + L2 LINE L2 2715 2752 -562 197 288 62 0 chr9 32768384 32768464 -85094163 + L2 LINE L2 3180 3264 -49 22 70 0 0 chr9 32770847 32770890 -85091737 + GC_rich Low_complexity Low_complexity 1 43 0 23 78 0 0 chr9 32770963 32771014 -85091613 + GC_rich Low_complexity Low_complexity 1 51 0 961 311 85 15 chr9 32771971 32772431 -85090196 - L2 LINE L2 0 3313 2822 4469 174 27 13 chr9 32773150 32774043 -85088584 - Charlie1a DNA MER1_type -12 1443 539 591 134 219 8 chr9 32774050 32774169 -85088458 + ORSL DNA AcHobo 2 145 -130 267 200 0 31 chr9 32774198 32774263 -85088364 - Charlie1a DNA MER1_type -918 537 475 * 1118 153 100 32 chr9 32774240 32774489 -85088138 - ORSL DNA AcHobo -9 266 1 2301 198 44 38 chr9 32774489 32774994 -85087633 - Charlie1a DNA MER1_type -947 508 1 1235 153 5 0 chr9 32775107 32775296 -85087331 + AluSx SINE Alu 1 190 -122 1374 178 32 36 chr9 32775518 32775741 -85086886 + Charlie1a DNA MER1_type 12 235 -2526 351 0 0 0 chr9 32775741 32775780 -85086847 + (CA)n Simple_repeat Simple_repeat 1 39 0 1374 178 32 36 chr9 32775780 32775837 -85086790 + Charlie1a DNA MER1_type 235 291 -1164 2205 156 36 3 chr9 32775843 32776233 -85086394 + Charlie1a DNA MER1_type 643 1045 -410 2540 53 0 3 chr9 32776249 32776551 -85086076 + AluY SINE Alu 1 301 -10 1471 176 24 110 chr9 32776645 32777054 -85085573 - MLT1A2 LTR MaLR 0 374 1 1921 151 3 13 chr9 32777070 32777382 -85085245 + AluJb SINE Alu 1 309 -3 3781 253 66 27 chr9 32777398 32778814 -85083813 + L1MC4a LINE L1 5305 6618 -1190 615 253 65 23 chr9 32778804 32779156 -85083471 - L1M4 LINE L1 -2685 3461 3095 * 1618 214 26 24 chr9 32779155 32779534 -85083093 - L1ME3A LINE L1 0 6170 5791 1846 198 67 118 chr9 32779537 32779638 -85082989 - L1ME3A LINE L1 -982 5164 5059 1750 146 9 61 chr9 32779638 32779966 -85082661 - AluSx SINE Alu -1 311 1 1846 198 67 118 chr9 32779966 32780214 -85082413 - L1ME3A LINE L1 -1087 5059 4800 11030 40 11 51 chr9 32780214 32781647 -85080980 + SVA Other Other 2 1377 -9 1846 198 67 118 chr9 32781647 32782028 -85080599 - L1ME3A LINE L1 -1346 4800 4470 279 273 18 36 chr9 32782032 32782142 -85080485 - L1M4 LINE L1 -964 5182 5075 295 215 98 18 chr9 32782812 32782973 -85079654 + L1ME3 LINE L1 5934 6162 0 283 243 175 0 chr9 32783064 32783167 -85079460 - L1M4 LINE L1 -1214 4932 4812 851 169 22 0 chr9 32783167 32783303 -85079324 - MLT1A2 LTR MaLR 0 374 236 1608 286 86 13 chr9 32783315 32784150 -85078477 - L1MEc LINE L1 -2781 3434 2539 545 256 62 40 chr9 32784220 32784541 -85078086 - L1MEc LINE L1 -3643 2572 2260 2327 108 3 0 chr9 32784541 32784847 -85077780 - AluSq SINE Alu -6 307 1 545 256 62 40 chr9 32784847 32785363 -85077264 - L1MEc LINE L1 -3955 2260 1630 315 204 88 22 chr9 32785379 32785516 -85077111 - L1MC5 LINE L1 -46 7915 7770 2120 244 32 14 chr9 32785545 32786111 -85076516 - L1ME2 LINE L1 -10 6154 5579 1129 112 0 129 chr9 32786108 32786341 -85076286 + L1PB3 LINE L1 5951 6153 -1 * 32 0 0 0 chr9 32786341 32786373 -85076254 + AT_rich Low_complexity Low_complexity 1 32 0 660 207 34 10 chr9 32786374 32786684 -85075943 - L1ME2 LINE L1 -573 5591 5196 3730 53 40 4 chr9 32786685 32787159 -85075468 - L1PA6 LINE L1 0 6154 5664 241 74 9 259 chr9 32787261 32787369 -85075258 + L1PB3 LINE L1 6073 6153 -1 6410 232 47 42 chr9 32787388 32787709 -85074918 - L1ME LINE L1 -562 5536 5218 6734 52 0 3 chr9 32787709 32788788 -85073839 - L1PA6 LINE L1 0 6154 5054 6410 232 47 42 chr9 32788788 32790510 -85072117 - L1ME LINE L1 -880 5218 3402 1294 129 17 21 chr9 32790510 32790750 -85071877 - L1MB3 LINE L1 -1 6182 5944 6410 232 47 42 chr9 32790750 32791211 -85071416 - L1ME LINE L1 -2696 3402 2945 780 253 87 62 chr9 32791217 32791829 -85070798 - L1ME LINE L1 -4981 1089 463 285 314 16 8 chr9 32791895 32792016 -85070611 - L1ME LINE L1 -5907 163 42 666 315 24 58 chr9 32792041 32792111 -85070516 - L1MEc LINE L1 -4761 1635 1564 786 173 8 0 chr9 32792111 32792238 -85070389 - FLAM_A SINE Alu -5 128 1 666 315 24 58 chr9 32792238 32792720 -85069907 - L1MEc LINE L1 -4832 1564 1102 1454 317 70 2 chr9 32792723 32793181 -85069446 - LTR16C LTR ERVL -2 489 1 2019 254 91 18 chr9 32794077 32794976 -85067651 - L1MEc LINE L1 -3037 3178 2214 390 301 102 32 chr9 32795075 32795291 -85067336 - L1MEc LINE L1 -4256 2140 1910 231 221 44 22 chr9 32795320 32795456 -85067171 + (TATAA)n Simple_repeat Simple_repeat 5 143 0 4005 170 186 88 chr9 32795539 32796071 -85066556 - L1MC3 LINE L1 0 7785 7306 230 303 11 45 chr9 32796071 32796160 -85066467 - MLT1F1 LTR MaLR -445 122 37 4005 170 186 88 chr9 32796160 32796901 -85065726 - L1MC3 LINE L1 -479 7306 6291 561 196 19 25 chr9 32796916 32797074 -85065553 - MER96B DNA MER1_type? -254 163 7 2140 112 61 0 chr9 32797973 32798267 -85064360 + AluSq SINE Alu 1 312 -1 1252 241 73 48 chr9 32799267 32799706 -85062921 - MLT1J2 LTR MaLR 0 450 1 492 242 23 15 chr9 32799954 32800086 -85062541 - L1ME3A LINE L1 0 6170 6038 240 333 56 0 chr9 32800277 32800367 -85062260 + MIR3 SINE MIR 89 183 -25 435 278 68 17 chr9 32800682 32800858 -85061769 + MIR SINE MIR 18 202 -60 249 254 70 0 chr9 32801276 32801347 -85061280 + MIR SINE MIR 47 122 -140 232 241 37 0 chr9 32801417 32801471 -85061156 + LTR67 LTR ERVL 115 170 -387 264 167 0 37 chr9 32801746 32801800 -85060827 + LTR33A LTR ERVL 447 498 -25 187 216 0 0 chr9 32803144 32803181 -85059446 - MER5A DNA MER1_type -5 184 148 1078 170 0 21 chr9 32803214 32803413 -85059214 + MER6A DNA MER2_type -10 183 -422 3437 168 23 26 chr9 32803420 32804004 -85058623 + L1MB4 LINE L1 5476 6060 -120 2109 112 4 0 chr9 32804004 32804282 -85058345 + AluSx SINE Alu 1 279 -33 252 0 0 0 chr9 32804282 32804310 -85058317 + (CA)n Simple_repeat Simple_repeat 1 28 0 3437 168 23 26 chr9 32804310 32804414 -85058213 + L1MB4 LINE L1 6058 6163 -17 341 187 13 0 chr9 32804414 32804489 -85058138 + (TG)n Simple_repeat Simple_repeat 2 77 0 * 393 339 24 6 chr9 32804477 32804642 -85057985 - MER5A DNA MER1_type -19 170 3 249 296 12 0 chr9 32805556 32805637 -85056990 - L2 LINE L2 -5 3308 3227 463 152 209 29 chr9 32805644 32805749 -85056878 - MER20 DNA MER1_type -94 125 2 516 185 0 0 chr9 32806089 32806181 -85056446 - AluJ/FLAM SINE Alu -219 93 2 1164 222 89 9 chr9 32806248 32806563 -85056064 - L1ME3A LINE L1 -5 6165 5826 207 250 144 94 chr9 32807090 32807250 -85055377 - MIR SINE MIR -79 183 16 214 292 0 43 chr9 32808754 32808833 -85053794 + MIR SINE MIR 77 151 -63 673 298 41 5 chr9 32810448 32810666 -85051961 - MIR SINE MIR -17 245 20 198 280 91 0 chr9 32812832 32812949 -85049678 + MIR3 SINE MIR 75 155 -53 1442 239 39 42 chr9 32813106 32813537 -85049090 - MER63B DNA MER1_type 0 436 7 561 226 0 0 chr9 32813953 32814099 -85048528 + (TG)n Simple_repeat Simple_repeat 2 147 0 22 0 0 0 chr9 32814630 32814652 -85047975 + AT_rich Low_complexity Low_complexity 1 22 0 238 233 83 0 chr9 32814932 32814992 -85047635 - MIR SINE MIR -74 188 124 563 284 136 49 chr9 32815401 32815912 -85046715 + LTR33A LTR ERVL 1 521 -2 562 250 10 66 chr9 32818742 32818938 -85043689 - MIR SINE MIR -47 215 31 539 263 82 6 chr9 32820077 32820248 -85042379 - MIR SINE MIR -1 261 78 359 244 0 33 chr9 32820246 32820336 -85042291 + MIR SINE MIR 75 161 -101 * 293 264 91 27 chr9 32820497 32820607 -85042020 + L2 LINE L2 3195 3311 -2 218 345 139 14 chr9 32822992 32823201 -85039426 - L2 LINE L2 -3 3269 3035 211 378 8 24 chr9 32823419 32823546 -85039081 + L2 LINE L2 2928 3052 -220 2382 116 0 0 chr9 32824128 32824439 -85038188 - AluSx SINE Alu -1 311 1 3692 243 37 15 chr9 32825652 32826735 -85035892 - L1M4 LINE L1 -1089 5057 3951 723 310 92 19 chr9 32826741 32827006 -85035621 + L1MEc LINE L1 1581 1825 -4571 2029 87 0 7 chr9 32827006 32827304 -85035323 - L1PA14 LINE L1 0 6161 5866 723 310 92 19 chr9 32827304 32827506 -85035121 + L1MEc LINE L1 1825 2082 -4314 346 269 23 0 chr9 32827932 32828042 -85034585 - MIR SINE MIR -86 122 9 233 212 45 15 chr9 32828948 32829014 -85033613 + MIR SINE MIR 64 131 -77 454 238 177 18 chr9 32829572 32829736 -85032891 + MIR SINE MIR 28 217 -45 406 282 61 0 chr9 32830015 32830146 -85032481 - MIR SINE MIR -116 146 8 371 279 41 14 chr9 32831812 32831959 -85030668 - L2 LINE L2 -209 3063 2913 492 278 156 9 chr9 32832330 32832542 -85030085 + MIR SINE MIR 2 244 -18 995 39 78 0 chr9 32832542 32832671 -85029956 + MER85 DNA T2_type 1 139 0 478 128 13 0 chr9 32832679 32832757 -85029870 + MADE1 DNA Mariner 2 80 0 590 266 114 13 chr9 32832940 32833286 -85029341 - MLT1J LTR MaLR -49 462 38 547 249 108 56 chr9 32835714 32835983 -85026644 + MER102b DNA MER1_type 58 340 -1 742 233 66 40 chr9 32836184 32836412 -85026215 - MLT1D LTR MaLR -270 235 2 206 327 156 30 chr9 32836580 32836779 -85025848 - L2 LINE L2 -352 2962 2739 441 298 35 0 chr9 32837096 32837237 -85025390 + MIR SINE MIR 35 180 -82 1634 156 27 40 chr9 32837317 32837618 -85025009 - AluJb SINE Alu -2 310 14 534 209 87 26 chr9 32838434 32838586 -85024041 - MIR SINE MIR -63 145 26 225 310 0 0 chr9 32839064 32839135 -85023492 - L2 LINE L2 -2 3270 3200 4944 200 63 72 chr9 32842172 32843739 -85018888 + L1MC4 LINE L1 6172 7804 -238 2341 75 0 0 chr9 32843739 32844051 -85018576 + AluSc SINE Alu 1 312 0 4944 200 63 72 chr9 32844051 32844289 -85018338 + L1MC4 LINE L1 7804 8042 0 258 240 13 67 chr9 32845093 32845168 -85017459 + Charlie1 DNA MER1_type 1 71 -2690 * 1400 150 147 12 chr9 32845166 32845500 -85017127 + Charlie1 DNA MER1_type 2343 2721 -40 1983 144 3 28 chr9 32845563 32845883 -85016744 + AluJb SINE Alu 1 312 0 839 289 54 31 chr9 32845883 32846236 -85016391 - MLT1I LTR MaLR -14 395 35 529 306 32 5 chr9 32846280 32846466 -85016161 + L2 LINE L2 3120 3310 -3 3158 148 22 22 chr9 32848059 32848595 -85014032 + L1MB3 LINE L1 5595 6133 -50 2236 112 3 3 chr9 32848595 32848890 -85013737 + AluSq SINE Alu 1 295 -18 3158 148 22 22 chr9 32848890 32848942 -85013685 + L1MB3 LINE L1 6132 6183 0 183 156 0 0 chr9 32849831 32849863 -85012764 + CT-rich Low_complexity Low_complexity 3 34 0 468 251 28 84 chr9 32851110 32851325 -85011302 + MER112 DNA MER1_type 18 220 -40 591 285 88 62 chr9 32852284 32852544 -85010083 - MLT1K LTR MaLR -109 479 213 821 183 151 0 chr9 32852992 32853182 -85009445 - MIR SINE MIR 0 262 45 2745 36 0 0 chr9 32853650 32853956 -85008671 + AluY SINE Alu 1 306 -5 207 182 0 0 chr9 32854043 32854076 -85008551 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 300 43 14 chr9 32854137 32854207 -85008420 - L2 LINE L2 -499 2815 2744 467 275 20 0 chr9 32854485 32854690 -85007937 + (TG)n Simple_repeat Simple_repeat 1 209 0 279 221 13 4 chr9 32854709 32854943 -85007684 + (TG)n Simple_repeat Simple_repeat 1 236 0 616 206 123 12 chr9 32856026 32856196 -85006431 - MIR SINE MIR -11 251 63 387 0 0 0 chr9 32856280 32856323 -85006304 + (CAAAA)n Simple_repeat Simple_repeat 5 47 0 2320 76 0 20 chr9 32856772 32857074 -85005553 - AluY SINE Alu -15 296 1 467 155 0 48 chr9 32858238 32858322 -85004305 - Tigger3(Golem) DNA MER2_type -2949 80 1 1567 198 71 40 chr9 32859403 32859782 -85002845 + MSTD LTR MaLR 6 396 0 2200 105 10 0 chr9 32860097 32860392 -85002235 + AluSq SINE Alu 1 298 -15 2659 166 22 2 chr9 32860488 32860988 -85001639 - L1MA6 LINE L1 -4 6296 5787 1811 286 58 62 chr9 32860998 32861840 -85000787 - L1M1 LINE L1 -6654 911 73 963 182 0 12 chr9 32863393 32863558 -84999069 + THE1C LTR MaLR 1 163 -212 2103 157 13 19 chr9 32865119 32865495 -84997132 + THE1C LTR MaLR 2 375 0 9052 138 9 102 chr9 32865495 32867238 -84995389 + THE1C-int LTR MaLR 1 1580 0 2097 158 13 16 chr9 32867240 32867614 -84995013 + THE1C LTR MaLR 3 375 0 198 0 0 0 chr9 32869095 32869117 -84993510 + (CA)n Simple_repeat Simple_repeat 2 23 0 2029 125 6 13 chr9 32869444 32869756 -84992871 - AluSx SINE Alu -2 310 1 834 282 127 42 chr9 32870917 32871445 -84991182 + MER90 LTR ERV1 1 573 -2 302 346 0 0 chr9 32871850 32871957 -84990670 - L2 LINE L2 -1008 2306 2200 2137 246 15 30 chr9 32872787 32873466 -84989161 + L1M4 LINE L1 4491 5159 -987 2037 109 22 47 chr9 32873737 32874058 -84988569 - AluSq SINE Alu 0 313 1 511 299 0 8 chr9 32874325 32874459 -84988168 + MER5A DNA MER1_type 55 187 -2 361 345 49 31 chr9 32875209 32875496 -84987131 + MLT1J LTR MaLR 16 307 -204 1014 315 30 36 chr9 32875918 32876600 -84986027 - L1M2 LINE L1 -6425 1160 9 493 303 82 22 chr9 32876687 32876918 -84985709 + HAL1 LINE L1 21 265 -2242 408 278 94 13 chr9 32877143 32877377 -84985250 + HAL1 LINE L1 1088 1340 -1167 1301 298 108 25 chr9 32877409 32878325 -84984302 + HAL1 LINE L1 1487 2478 -29 942 294 54 11 chr9 32879133 32879412 -84983215 + MER45C DNA AcHobo 8 298 -655 29 0 0 0 chr9 32880637 32880666 -84981961 + AT_rich Low_complexity Low_complexity 1 29 0 2436 126 6 6 chr9 32880808 32881172 -84981455 + THE1B LTR MaLR 1 364 0 399 253 123 25 chr9 32881436 32881598 -84981029 + MIR SINE MIR 84 261 -1 252 319 28 7 chr9 32882532 32882676 -84979951 - HAL1b LINE L1 -770 578 432 1998 151 25 25 chr9 32884375 32884552 -84978075 - L1PA16 LINE L1 0 6166 5990 1824 151 178 6 chr9 32884552 32884917 -84977710 + MSTA LTR MaLR 1 428 0 1998 151 25 25 chr9 32884917 32885104 -84977523 - L1PA16 LINE L1 -175 5991 5802 420 354 57 60 chr9 32885176 32885840 -84976787 - L2 LINE L2 -1021 2293 1632 24 0 0 0 chr9 32886080 32886104 -84976523 + AT_rich Low_complexity Low_complexity 1 24 0 1109 233 8 8 chr9 32887130 32887370 -84975257 + LTR47B LTR ERVL 204 443 0 1006 295 84 75 chr9 32887994 32888651 -84973976 + MLT2F LTR ERVL 1 663 0 22 35 0 0 chr9 32888878 32888907 -84973720 + AT_rich Low_complexity Low_complexity 1 29 0 2084 130 0 3 chr9 32889982 32890283 -84972344 - AluSg SINE Alu -10 300 1 608 231 0 0 chr9 32890429 32890546 -84972081 + MER82 DNA MER2_type 10 126 -527 3534 158 11 6 chr9 32890548 32891196 -84971431 - MER50 LTR ERV1 -23 711 1 240 310 9 9 chr9 32891320 32891436 -84971191 - Tigger2 DNA MER2_type -1598 1120 757 1895 226 64 2 chr9 32891688 32892112 -84970515 + MER82 DNA MER2_type 204 653 0 354 143 0 0 chr9 32892216 32892279 -84970348 + (TG)n Simple_repeat Simple_repeat 1 63 0 3614 96 36 11 chr9 32892592 32893115 -84969512 + MER41A LTR ERV1 19 554 0 2986 158 115 52 chr9 32893199 32893914 -84968713 + MER41A-int LTR ERV1 3 762 -5184 4176 152 76 12 chr9 32894016 32894767 -84967860 + MER41A-int LTR ERV1 977 1775 -4171 819 85 144 10 chr9 32894754 32894909 -84967718 + MER41A-int LTR ERV1 1503 2017 -3929 * 291 80 80 0 chr9 32894885 32894935 -84967692 + MER41A-int LTR ERV1 2167 2220 -3726 * 13369 159 77 45 chr9 32894931 32898107 -84964520 + MER41A-int LTR ERV1 2667 5944 -2 3717 110 32 0 chr9 32898107 32898644 -84963983 + MER41A LTR ERV1 1 554 0 424 289 86 22 chr9 32898646 32898878 -84963749 + L1M4 LINE L1 4 250 -6292 2540 255 92 64 chr9 32898929 32899644 -84962983 - L1MCb LINE L1 -4851 1194 840 447 69 0 0 chr9 32899644 32899702 -84962925 - MER41B LTR ERV1 -3 632 575 2540 255 92 64 chr9 32899702 32900564 -84962063 - L1MCb LINE L1 -5205 840 4 1003 275 22 5 chr9 32900594 32900965 -84961662 - L1MCa LINE L1 -3269 3295 2919 510 296 41 12 chr9 32900976 32901219 -84961408 + L1M4 LINE L1 2740 2989 -3655 1021 256 62 39 chr9 32901274 32901707 -84960920 - L1MCa LINE L1 -5033 1012 570 2139 104 17 7 chr9 32901818 32902117 -84960510 - AluSc SINE Alu -7 302 1 708 264 26 10 chr9 32902123 32902316 -84960311 - L1MCa LINE L1 -5491 554 359 418 256 25 8 chr9 32902527 32902648 -84959979 - L1MCa LINE L1 -5705 340 218 1006 269 93 25 chr9 32902649 32903046 -84959581 - MLT1C LTR MaLR -9 458 35 589 262 38 11 chr9 32903083 32903292 -84959335 - L1MCa LINE L1 -5853 320 1 1936 142 3 0 chr9 32903511 32903800 -84958827 + AluSx SINE Alu 1 290 -22 1988 136 163 8 chr9 32904578 32904947 -84957680 - MSTA LTR MaLR 0 428 3 1704 121 51 81 chr9 32905434 32905805 -84956822 - THE1C LTR MaLR -15 360 1 756 146 49 0 chr9 32905827 32905971 -84956656 + L1MB1 LINE L1 6017 6167 -1 204 83 0 56 chr9 32906440 32906476 -84956151 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 1841 164 61 19 chr9 32906491 32906851 -84955776 + THE1C LTR MaLR 1 375 0 1821 160 20 23 chr9 32907777 32908121 -84954506 - MER2 DNA MER2_type 0 344 2 215 331 158 7 chr9 32908454 32908593 -84954034 - MIR3 SINE MIR -40 168 9 485 254 94 50 chr9 32909042 32909243 -84953384 - L1ME1 LINE L1 -84 6082 5909 406 321 92 5 chr9 32909451 32909635 -84952992 - MIR SINE MIR -53 209 10 25 0 0 0 chr9 32910155 32910180 -84952447 + AT_rich Low_complexity Low_complexity 1 25 0 3872 169 34 14 chr9 32910430 32911195 -84951432 - L1MA10 LINE L1 -2 6332 5553 22 35 0 0 chr9 32911267 32911296 -84951331 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr9 32911513 32911544 -84951083 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr9 32911950 32911989 -84950638 + AT_rich Low_complexity Low_complexity 1 39 0 229 330 51 17 chr9 32911994 32912112 -84950515 - L2 LINE L2 -17 3296 3175 241 271 35 12 chr9 32912117 32912202 -84950425 + L1MC4 LINE L1 6614 6700 -1342 266 169 15 0 chr9 32913014 32913079 -84949548 + (TG)n Simple_repeat Simple_repeat 2 67 0 226 175 0 32 chr9 32913097 32913160 -84949467 + GA-rich Low_complexity Low_complexity 1 61 0 1590 124 4 65 chr9 32913308 32913583 -84949044 + AluJo SINE Alu 39 296 -16 32 0 0 0 chr9 32914212 32914244 -84948383 + AT_rich Low_complexity Low_complexity 1 32 0 379 329 33 33 chr9 32914571 32914781 -84947846 - L1M4 LINE L1 -2329 3817 3608 23 0 0 0 chr9 32914792 32914815 -84947812 + AT_rich Low_complexity Low_complexity 1 23 0 271 407 16 41 chr9 32915902 32916145 -84946482 - L2 LINE L2 -50 3222 2986 894 270 71 19 chr9 32916787 32917154 -84945473 - L1MB7 LINE L1 -10 6174 5789 1274 225 55 71 chr9 32917262 32917680 -84944947 - L1MB7 LINE L1 -368 5798 5375 1484 219 7 3 chr9 32917680 32917981 -84944646 - AluJo SINE Alu -6 306 5 1274 225 55 71 chr9 32917981 32918046 -84944581 - L1MB7 LINE L1 -791 5375 5311 2472 66 6 12 chr9 32918046 32918380 -84944247 + L1PA7 LINE L1 5823 6154 0 1274 225 55 71 chr9 32918380 32918410 -84944217 - L1MB7 LINE L1 -855 5311 5282 402 39 0 0 chr9 32918410 32918462 -84944165 + (TAA)n Simple_repeat Simple_repeat 1 52 0 1274 225 55 71 chr9 32918462 32918649 -84943978 - L1MB7 LINE L1 -884 5282 5088 299 172 13 0 chr9 32918680 32918750 -84943877 + L1ME LINE L1 5605 5679 -485 4012 37 19 0 chr9 32918801 32919282 -84943345 - LTR2B LTR ERV1 0 490 1 245 95 0 81 chr9 32919338 32919412 -84943215 + (TA)n Simple_repeat Simple_repeat 1 68 0 1876 250 58 31 chr9 32919480 32920223 -84942404 - L1MB7 LINE L1 -1112 5034 4272 23 0 0 0 chr9 32920257 32920280 -84942347 + AT_rich Low_complexity Low_complexity 1 23 0 2519 272 31 70 chr9 32920280 32921081 -84941546 - L1MA9 LINE L1 -38 6274 5505 338 194 10 51 chr9 32921075 32921173 -84941454 - L1MB7 LINE L1 -1875 4271 4178 * 36 77 0 0 chr9 32921715 32921793 -84940834 + AT_rich Low_complexity Low_complexity 1 78 0 720 288 0 42 chr9 32922149 32922364 -84940263 - MER63A DNA MER1_type -4 206 1 479 292 116 13 chr9 32922395 32922792 -84939835 - MLT1L LTR MaLR -6 609 131 564 288 124 8 chr9 32923458 32923708 -84938919 + LTR16A1 LTR ERVL 179 457 0 440 152 96 68 chr9 32924131 32924147 -84938480 - L1MA8 LINE L1 -87 6207 6193 368 129 29 0 chr9 32924147 32924217 -84938410 - L1MA9 LINE L1 0 6312 6241 440 152 96 68 chr9 32924217 32924345 -84938282 - L1MA8 LINE L1 -101 6193 6069 225 319 76 28 chr9 32924530 32924674 -84937953 - MIR SINE MIR -24 238 88 2532 140 24 7 chr9 32926397 32926818 -84935809 - MSTA LTR MaLR 0 428 1 582 220 0 0 chr9 32926941 32927059 -84935568 - L1PB4 LINE L1 -11 6145 6028 237 326 0 0 chr9 32927059 32927154 -84935473 - L1MCb LINE L1 -5161 884 790 857 301 70 55 chr9 32927164 32927619 -84935008 - L2 LINE L2 0 3313 2852 367 258 24 32 chr9 32927662 32927786 -84934841 - L2 LINE L2 -914 2400 2278 1059 304 45 104 chr9 32927913 32928779 -84933848 - L2 LINE L2 -2064 1250 436 189 300 17 17 chr9 32928911 32928971 -84933656 - MIR SINE MIR -133 75 16 203 195 24 0 chr9 32929140 32929181 -84933446 + (CATA)n Simple_repeat Simple_repeat 2 43 0 183 42 0 0 chr9 32929673 32929697 -84932930 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 864 194 10 35 chr9 32930023 32930224 -84932403 - L1MC3 LINE L1 -572 7213 7018 346 78 78 0 chr9 32931833 32931935 -84930692 + (TA)n Simple_repeat Simple_repeat 1 110 0 206 258 52 62 chr9 32932559 32932656 -84929971 + L2 LINE L2 3212 3307 -6 22 35 0 0 chr9 32933133 32933162 -84929465 + AT_rich Low_complexity Low_complexity 1 29 0 260 224 45 0 chr9 32934110 32934177 -84928450 - Charlie1 DNA MER1_type -5 2756 2687 316 239 7 7 chr9 32934389 32934527 -84928100 + (TA)n Simple_repeat Simple_repeat 2 139 0 25 0 0 0 chr9 32934593 32934618 -84928009 + AT_rich Low_complexity Low_complexity 1 25 0 1171 180 32 54 chr9 32934928 32935206 -84927421 + AluJb SINE Alu 22 293 -19 700 207 122 0 chr9 32935214 32935402 -84927225 - MER33 DNA MER1_type -89 235 25 316 346 66 15 chr9 32935871 32936007 -84926620 + MIR3 SINE MIR 2 144 -64 25 65 0 0 chr9 32936095 32936141 -84926486 + AT_rich Low_complexity Low_complexity 1 46 0 31 0 0 0 chr9 32936233 32936264 -84926363 + AT_rich Low_complexity Low_complexity 1 31 0 2228 168 36 7 chr9 32936276 32936692 -84925935 + MSTA LTR MaLR 1 428 0 243 266 75 53 chr9 32937247 32937341 -84925286 + MER5A DNA MER1_type 94 189 0 777 302 56 32 chr9 32937628 32938186 -84924441 - MLT2E LTR ERVL 0 628 10 2085 125 0 0 chr9 32938648 32938935 -84923692 - AluSx SINE Alu -24 288 2 2131 190 101 46 chr9 32939583 32940238 -84922389 - LTR28 LTR ERV1 -7 827 121 405 173 39 167 chr9 32940254 32940410 -84922217 - LTR28 LTR ERV1 -289 171 1 265 365 83 0 chr9 32941889 32942034 -84920593 - L1ME LINE L1 -5902 168 12 2247 97 0 7 chr9 32943187 32943485 -84919142 - AluSx SINE Alu -16 296 1 387 41 0 0 chr9 32943739 32943788 -84918839 + (CA)n Simple_repeat Simple_repeat 2 50 0 2231 106 10 0 chr9 32945163 32945466 -84917161 - AluSc SINE Alu -3 306 1 21 36 0 0 chr9 32946306 32946334 -84916293 + AT_rich Low_complexity Low_complexity 1 28 0 281 375 52 2 chr9 32946970 32947125 -84915502 + MER5A DNA MER1_type 15 178 0 23 0 0 0 chr9 32947397 32947420 -84915207 + AT_rich Low_complexity Low_complexity 1 23 0 6557 73 55 4 chr9 32947501 32948930 -84913697 - L1PA7 LINE L1 0 6154 4684 458 129 24 0 chr9 32948930 32949015 -84913612 + L1P LINE L1 3850 3936 -2210 2824 101 31 2 chr9 32949134 32949580 -84913047 - L1P LINE L1 -1003 5143 4685 5258 109 32 2 chr9 32949581 32950391 -84912236 + L1P LINE L1 3849 4682 -1464 2050 308 94 24 chr9 32950677 32951755 -84910872 - L2 LINE L2 -270 3043 1897 525 319 98 0 chr9 32951976 32952139 -84910488 - L2 LINE L2 -2075 1239 1061 2009 194 39 5 chr9 32952140 32952750 -84909877 + Tigger7 DNA MER2_type 2 710 -1777 2249 328 57 21 chr9 32952767 32953782 -84908845 - L2 LINE L2 -2225 1089 38 533 332 96 21 chr9 32954146 32954523 -84908104 + L1MEc LINE L1 29 433 -5963 1369 256 17 37 chr9 32954677 32954697 -84907930 + L1M4 LINE L1 3483 3502 -2644 2238 98 7 0 chr9 32954697 32954993 -84907634 - AluSg SINE Alu -12 298 1 1369 256 17 37 chr9 32954993 32955378 -84907249 + L1M4 LINE L1 3502 3880 -2266 267 345 12 48 chr9 32955374 32955542 -84907085 - L1ME LINE L1 -5655 415 254 * 1054 263 91 53 chr9 32955639 32956204 -84906423 + MLT1E1 LTR MaLR 1 647 -7 346 259 43 79 chr9 32956206 32956345 -84906282 - L1ME LINE L1 -5900 170 37 4051 126 1 28 chr9 32956719 32957372 -84905255 - L1PA15 LINE L1 -4 6161 5526 2358 192 25 40 chr9 32958004 32958531 -84904096 + MLT2B1 LTR ERVL 2 520 0 1893 82 30 26 chr9 32958780 32959047 -84903580 - AluSg SINE Alu -8 302 35 33 0 0 0 chr9 32959365 32959398 -84903229 + AT_rich Low_complexity Low_complexity 1 33 0 2349 73 7 0 chr9 32959406 32959708 -84902919 + AluY SINE Alu 2 305 -6 187 336 172 8 chr9 32959719 32959841 -84902786 - MIR SINE MIR -89 173 32 5229 157 50 4 chr9 32960318 32960458 -84902169 + L1MA4 LINE L1 4542 4674 -1626 239 0 32 0 chr9 32960458 32960489 -84902138 + (CAA)n Simple_repeat Simple_repeat 2 33 0 5229 157 50 4 chr9 32960489 32962026 -84900601 + L1MA4 LINE L1 4674 6294 -6 305 289 133 23 chr9 32962632 32962760 -84899867 - L2 LINE L2 -1 3312 3171 249 188 16 31 chr9 32963187 32963251 -84899376 + CT-rich Low_complexity Low_complexity 3 65 0 25 0 0 0 chr9 32963847 32963872 -84898755 + AT_rich Low_complexity Low_complexity 1 25 0 2173 68 7 0 chr9 32964092 32964371 -84898256 + AluY SINE Alu 1 281 -30 702 162 8 0 chr9 32964526 32964643 -84897984 - AluJb SINE Alu -30 282 165 570 298 77 10 chr9 33066180 33066489 -84796138 - MLT1J2 LTR MaLR -83 367 29 232 317 89 16 chr9 33067313 33067436 -84795191 + L2 LINE L2 3141 3272 0 216 171 0 0 chr9 33067468 33067503 -84795124 + (CA)n Simple_repeat Simple_repeat 2 36 0 264 229 0 0 chr9 33067984 33068045 -84794582 - MER4-int LTR ERV1 -5443 1155 1095 705 241 128 108 chr9 33068757 33069164 -84793463 + MLT1E3 LTR MaLR 1 415 -209 258 274 105 24 chr9 33070853 33070977 -84791650 - MER117 DNA MER1_type -46 151 18 253 359 39 8 chr9 33071001 33071129 -84791498 - MIR SINE MIR -110 152 21 721 293 26 4 chr9 33071205 33071434 -84791193 + MIR SINE MIR 21 254 -8 302 248 146 38 chr9 33072472 33072578 -84790049 - MIR SINE MIR -63 145 38 996 184 110 18 chr9 33072624 33072842 -84789785 + MLT1E3 LTR MaLR 1 238 -386 231 206 27 14 chr9 33073148 33073221 -84789406 + (TA)n Simple_repeat Simple_repeat 2 75 0 1191 140 95 9 chr9 33075490 33075711 -84786916 + L1PA16 LINE L1 5926 6165 -1 279 331 40 0 chr9 33076187 33076311 -84786316 - L1MC/D LINE L1 -2226 5582 5454 49 43 0 0 chr9 33078244 33078314 -84784313 + AT_rich Low_complexity Low_complexity 1 70 0 231 204 0 0 chr9 33078460 33078514 -84784113 + (CA)n Simple_repeat Simple_repeat 2 55 0 646 271 23 0 chr9 33079538 33079715 -84782912 + L1M4 LINE L1 1480 1660 -4724 * 1741 252 36 2 chr9 33079714 33080183 -84782444 + L1M4 LINE L1 3970 4454 -1928 453 328 118 41 chr9 33081360 33081448 -84781179 - L3 LINE CR1 -872 705 625 2316 47 30 14 chr9 33081448 33081744 -84780883 + AluY SINE Alu 1 301 -10 453 328 118 41 chr9 33081744 33081993 -84780634 - L3 LINE CR1 -952 625 342 952 266 21 62 chr9 33083298 33083636 -84778991 - L2 LINE L2 -965 2349 2026 399 379 21 7 chr9 33083717 33083999 -84778628 - L1MEc LINE L1 -6077 319 34 187 143 0 0 chr9 33084603 33084631 -84777996 - L2 LINE L2 -17 3296 3269 2786 195 62 114 chr9 33085397 33086350 -84776277 - Charlie1a DNA MER1_type -1328 1433 547 8212 52 1 0 chr9 33086350 33087315 -84775312 - LTR5 LTR ERVK -3 966 1 2786 195 62 114 chr9 33087315 33087503 -84775124 - Charlie1a DNA MER1_type -2214 547 351 723 262 0 6 chr9 33087492 33087656 -84774971 - Charlie1a DNA MER1_type -1292 163 1 * 259 353 22 15 chr9 33088705 33088841 -84773786 + MIR SINE MIR 112 248 -14 181 365 14 0 chr9 33088971 33089045 -84773582 + L3 LINE CR1 1331 1405 -172 25 51 0 0 chr9 33089209 33089248 -84773379 + AT_rich Low_complexity Low_complexity 1 39 0 184 239 34 68 chr9 33090258 33090346 -84772281 + MIR SINE MIR 58 142 -66 414 290 82 29 chr9 33090630 33090875 -84771752 - MIR SINE MIR -1 261 4 225 355 15 65 chr9 33091067 33091267 -84771360 - MIR3 SINE MIR -12 196 7 22 0 0 0 chr9 33092497 33092519 -84770108 + AT_rich Low_complexity Low_complexity 1 22 0 711 308 65 12 chr9 33092933 33093313 -84769314 - MLT1H LTR MaLR -3 546 14 236 277 141 22 chr9 33093354 33093538 -84769089 + L1MC/D LINE L1 5597 5802 -2006 28 0 0 0 chr9 33093833 33093861 -84768766 + AT_rich Low_complexity Low_complexity 1 28 0 276 247 55 75 chr9 33093966 33094112 -84768515 - L2 LINE L2 -211 3061 2919 221 333 14 28 chr9 33094629 33094701 -84767926 + L2 LINE L2 427 497 -2817 623 216 15 0 chr9 33097577 33097711 -84764916 + L1ME LINE L1 5608 5743 -423 1349 73 21 0 chr9 33097733 33097924 -84764703 - L1PA7 LINE L1 0 6154 5960 1588 182 7 25 chr9 33098669 33098955 -84763672 - AluJo SINE Alu -31 281 1 305 308 62 0 chr9 33099184 33099330 -84763297 - LTR33 LTR ERVL 0 521 367 326 318 130 27 chr9 33099879 33100140 -84762487 - LTR33 LTR ERVL -228 293 6 278 206 103 37 chr9 33100616 33100723 -84761904 - L1ME3 LINE L1 -7 6155 6042 1328 245 164 19 chr9 33100940 33101458 -84761169 + L1MC4 LINE L1 7079 7521 -521 1972 123 13 20 chr9 33101458 33101759 -84760868 - AluSp SINE Alu -12 301 3 1328 245 164 19 chr9 33101759 33102011 -84760616 + L1MC4 LINE L1 7521 8042 0 1556 162 13 6 chr9 33102525 33102876 -84759751 - L1MB1 LINE L1 -640 5528 5173 3716 157 7 13 chr9 33102880 33103556 -84759071 + L1MB1 LINE L1 5497 6168 0 878 271 75 102 chr9 33103620 33104178 -84758449 + MLT1H1 LTR MaLR 5 547 -8 2010 226 51 40 chr9 33104400 33105005 -84757622 - LTR9 LTR ERV1 0 612 1 336 276 112 10 chr9 33105211 33105309 -84757318 + L2 LINE L2 3149 3256 -16 190 227 27 13 chr9 33105319 33105394 -84757233 + GA-rich Low_complexity Low_complexity 4 79 0 470 260 160 13 chr9 33105449 33105599 -84757028 + MER5B DNA MER1_type 1 172 -6 329 362 22 14 chr9 33106413 33106551 -84756076 + L2 LINE L2 3134 3272 0 227 331 90 7 chr9 33107132 33107277 -84755350 - MIR SINE MIR -3 259 103 596 232 83 39 chr9 33109734 33109988 -84752639 - L1M3 LINE L1 -1460 4686 4422 * 2533 96 52 0 chr9 33109971 33110355 -84752272 - L1PA11 LINE L1 -2 6172 5769 12667 150 32 22 chr9 33109973 33111436 -84751191 - L1PA11 LINE L1 -4 6170 4723 1864 172 33 28 chr9 33111436 33111796 -84750831 - THE1B LTR MaLR -2 362 1 12667 150 32 22 chr9 33111796 33113520 -84749107 - L1PA11 LINE L1 -1451 4723 2935 1813 134 7 0 chr9 33113520 33113796 -84748831 - AluSx SINE Alu 0 312 35 12667 150 32 22 chr9 33113796 33113830 -84748797 - L1PA11 LINE L1 -3239 2935 2903 218 394 170 0 chr9 33114387 33114552 -84748075 + L2 LINE L2 2439 2631 -683 335 337 23 23 chr9 33115691 33115863 -84746764 - L1ME LINE L1 -407 5714 5543 438 139 57 16 chr9 33116678 33116800 -84745827 + CT-rich Low_complexity Low_complexity 4 130 0 541 206 38 46 chr9 33116853 33116984 -84745643 - MER58A DNA MER1_type -15 209 80 354 241 60 90 chr9 33117330 33117463 -84745164 + L1MC4 LINE L1 6575 6703 -1339 295 264 42 0 chr9 33119318 33119390 -84743237 + MIR SINE MIR 110 184 -78 244 235 0 0 chr9 33119482 33119533 -84743094 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 259 226 0 43 chr9 33119534 33119627 -84743000 + L1MC4 LINE L1 6614 6702 -1340 * 314 276 0 19 chr9 33119588 33119693 -84742934 - L1MC4 LINE L1 -1339 6703 6601 577 280 84 3 chr9 33120021 33120364 -84742263 + L1ME3A LINE L1 4967 5337 -809 * 1286 222 85 95 chr9 33120358 33120925 -84741702 + L1ME3A LINE L1 5602 6162 -8 365 295 40 27 chr9 33120953 33121102 -84741525 + L1MEd LINE L1 2 152 -5967 2234 110 10 0 chr9 33121315 33121624 -84741003 + AluSx SINE Alu 1 312 0 320 328 81 11 chr9 33122138 33122312 -84740315 + L1MC4a LINE L1 5766 5951 -1857 374 231 165 44 chr9 33124017 33124199 -84738428 + MLT1J2 LTR MaLR 2 205 -245 235 271 115 66 chr9 33124232 33124354 -84738273 + MLT1J2 LTR MaLR 279 406 -44 661 286 17 17 chr9 33124389 33124564 -84738063 - MER5A DNA MER1_type 0 189 15 352 237 30 69 chr9 33125271 33125402 -84737225 + MIR SINE MIR 9 134 -128 600 211 18 0 chr9 33125524 33125633 -84736994 + MER58A DNA MER1_type 5 115 0 350 148 0 0 chr9 33125640 33125694 -84736933 + MER58A DNA MER1_type 171 224 0 1666 178 5 98 chr9 33126248 33126647 -84735980 - MLT1A1 LTR MaLR -3 362 1 660 259 64 70 chr9 33126784 33127127 -84735500 - MLT1I LTR MaLR 0 409 69 391 260 58 0 chr9 33127325 33127429 -84735198 - MER5B DNA MER1_type 0 178 69 713 247 14 115 chr9 33128874 33129222 -84733405 - MER46C DNA MER2_type -24 314 2 253 167 15 30 chr9 33129929 33129995 -84732632 - L1MEc LINE L1 -5214 1182 1118 1105 288 32 14 chr9 33130050 33130421 -84732206 + L1ME1 LINE L1 34 411 -5985 1244 244 83 47 chr9 33130475 33131156 -84731471 - L1MEc LINE L1 -4785 1430 775 679 249 71 58 chr9 33131160 33131778 -84730849 + L1ME1 LINE L1 2991 6230 -5 388 300 120 7 chr9 33132313 33132463 -84730164 + MIR SINE MIR 80 246 -16 1091 221 108 40 chr9 33132872 33133243 -84729384 + MSTD LTR MaLR 1 396 0 193 297 40 14 chr9 33133464 33133538 -84729089 - MIR SINE MIR -62 146 71 238 253 11 11 chr9 33134003 33134098 -84728529 + GA-rich Low_complexity Low_complexity 2 96 0 667 288 56 14 chr9 33134603 33134818 -84727809 - MIR SINE MIR -30 232 9 436 343 34 0 chr9 33135624 33135799 -84726828 - MIR3 SINE MIR -9 199 19 23 33 0 0 chr9 33136203 33136233 -84726394 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr9 33136525 33136547 -84726080 + AT_rich Low_complexity Low_complexity 1 22 0 1613 82 43 0 chr9 33137175 33137407 -84725220 - L1PA11 LINE L1 0 6174 5933 925 189 12 0 chr9 33137412 33137576 -84725051 - MER2 DNA MER2_type -173 172 7 6609 71 3 9 chr9 33138012 33139122 -84723505 + L1PA7 LINE L1 5048 6152 -2 486 290 91 60 chr9 33139463 33139860 -84722767 + MLT1L LTR MaLR 200 608 -7 257 100 100 0 chr9 33140163 33140213 -84722414 - MLT2A1 LTR ERVL 0 453 399 208 183 0 28 chr9 33140311 33140382 -84722245 + (TA)n Simple_repeat Simple_repeat 1 69 0 2695 86 21 10 chr9 33140398 33140781 -84721846 - MLT2A1 LTR ERVL -57 387 1 359 312 108 31 chr9 33141344 33141423 -84721204 - L1MC/D LINE L1 -867 5445 5374 2249 81 0 29 chr9 33141423 33141730 -84720897 - AluY SINE Alu -13 298 1 359 312 108 31 chr9 33141730 33142173 -84720454 - L1MC/D LINE L1 -938 5374 5254 29 28 0 0 chr9 33142182 33142218 -84720409 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 33142783 33142805 -84719822 + AT_rich Low_complexity Low_complexity 1 22 0 921 187 73 4 chr9 33143829 33144168 -84718459 + MSTD LTR MaLR 1 396 0 278 322 85 17 chr9 33145907 33146084 -84716543 + MIR SINE MIR 18 206 -56 29 70 0 0 chr9 33147786 33147843 -84714784 + AT_rich Low_complexity Low_complexity 1 57 0 231 321 27 27 chr9 33147966 33148078 -84714549 + L2 LINE L2 688 799 -2515 192 364 59 0 chr9 33148127 33148245 -84714382 + L2 LINE L2 962 1086 -2228 2088 224 25 7 chr9 33148284 33148717 -84713910 - MER74C LTR ERVL 0 460 20 5447 172 28 17 chr9 33148719 33150047 -84712580 + L1MA5 LINE L1 4963 6300 0 229 357 0 0 chr9 33150104 33150174 -84712453 + L2 LINE L2 1127 1196 -2118 1058 305 144 6 chr9 33150221 33150742 -84711885 + L2 LINE L2 1721 2313 -1001 263 235 106 12 chr9 33150747 33150832 -84711795 + MLT1L LTR MaLR 1 93 -522 1466 299 17 10 chr9 33151357 33151765 -84710862 - LTR16C LTR ERVL -7 484 74 254 361 87 11 chr9 33152062 33152245 -84710382 - ERVL LTR ERVL -601 5163 4967 377 353 52 46 chr9 33152252 33152728 -84709899 - ERVL LTR ERVL -832 4822 4344 264 286 8 88 chr9 33153338 33153467 -84709160 - MIR SINE MIR -68 140 38 1224 246 34 82 chr9 33154811 33155335 -84707292 + LTR53 LTR ERVL 21 519 0 334 262 107 30 chr9 33155859 33156027 -84706600 - L1M4 LINE L1 -1929 4217 4037 299 295 105 21 chr9 33156750 33156845 -84705782 + L2 LINE L2 3197 3299 -14 1517 166 232 27 chr9 33157931 33158298 -84704329 + MLT2B1 LTR ERVL 1 442 -78 231 125 0 0 chr9 33158329 33158369 -84704258 + (TC)n Simple_repeat Simple_repeat 2 41 0 204 275 66 66 chr9 33158598 33158689 -84703938 - L3 LINE CR1 -2 1575 1485 26 64 0 0 chr9 33158994 33159041 -84703586 + AT_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr9 33159150 33159184 -84703443 + AT_rich Low_complexity Low_complexity 1 34 0 1595 184 86 89 chr9 33159309 33159858 -84702769 + MLT2B3 LTR ERVL 1 547 -7 23 33 0 0 chr9 33160094 33160124 -84702503 + AT_rich Low_complexity Low_complexity 1 30 0 1351 243 0 0 chr9 33160135 33160415 -84702212 - AluJo SINE Alu -31 281 2 245 240 31 31 chr9 33160501 33160597 -84702030 + L1ME1 LINE L1 4596 4691 -1455 6298 97 40 9 chr9 33160593 33161689 -84700938 - L1PA13 LINE L1 -2 6161 5047 3405 5 8 0 chr9 33161827 33162217 -84700410 - L1PA4 LINE L1 -4 6151 5759 4277 27 2 0 chr9 33162217 33162826 -84699801 + L1PA4 LINE L1 5153 5762 -393 286 354 67 14 chr9 33163091 33163314 -84699313 + L1ME3A LINE L1 5649 5883 -287 2768 250 41 14 chr9 33163808 33164609 -84698018 + L1ME1 LINE L1 5338 6160 -6 183 80 0 0 chr9 33165093 33165118 -84697509 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 231 257 83 55 chr9 33165155 33165264 -84697363 - MIR SINE MIR -98 164 53 208 233 83 0 chr9 33165304 33165364 -84697263 + MIR3 SINE MIR 102 166 -42 242 270 32 0 chr9 33167040 33167103 -84695524 + MLT1H LTR MaLR 23 87 -462 768 333 74 17 chr9 33167959 33168537 -84694090 - L2 LINE L2 -42 3271 2660 378 262 124 64 chr9 33168885 33169087 -84693540 - LTR33A LTR ERVL -345 178 1 1736 296 23 54 chr9 33169360 33170099 -84692528 - L2 LINE L2 -688 2626 1911 1402 293 80 43 chr9 33170104 33170868 -84691759 - HERV16 LTR ERVL -4192 804 13 696 349 31 14 chr9 33170919 33171274 -84691353 - LTR16A LTR ERVL -55 395 35 384 348 61 11 chr9 33172113 33172294 -84690333 - MIR3 SINE MIR -6 202 13 256 398 42 8 chr9 33173560 33173678 -84688949 - L2 LINE L2 -8 3264 3143 22 35 0 0 chr9 33174018 33174047 -84688580 + AT_rich Low_complexity Low_complexity 1 29 0 232 238 25 12 chr9 33174093 33174173 -84688454 - L1ME4a LINE L1 -63 6058 5978 181 152 22 87 chr9 33174177 33174223 -84688404 - L2 LINE L2 0 3313 3271 1541 164 66 14 chr9 33174650 33174937 -84687690 + AluSx SINE Alu 1 302 -10 525 325 13 45 chr9 33175178 33175335 -84687292 + L2 LINE L2 3100 3251 -21 1020 139 36 6 chr9 33176698 33176864 -84685763 + MLT2B1 LTR ERVL 3 173 -347 631 263 78 0 chr9 33176882 33177061 -84685566 + MLT2B2 LTR ERVL 323 515 0 2124 133 36 28 chr9 33177813 33178174 -84684453 - THE1B LTR MaLR 0 364 1 2258 64 10 16 chr9 33178378 33178690 -84683937 + AluY SINE Alu 2 311 0 301 239 69 94 chr9 33179112 33179271 -84683356 - HAL1b LINE L1 -1125 223 69 21 0 0 0 chr9 33180578 33180599 -84682028 + AT_rich Low_complexity Low_complexity 1 21 0 632 104 10 0 chr9 33181224 33181320 -84681307 - L1MB5 LINE L1 -10 6164 6068 435 134 0 0 chr9 33181376 33181443 -84681184 - MADE1 DNA Mariner -12 68 2 1115 211 160 56 chr9 33181892 33181971 -84680656 - Charlie2 DNA MER1_type -309 2553 2484 2302 92 3 16 chr9 33181971 33182286 -84680341 + AluSp SINE Alu 3 313 0 1115 211 160 56 chr9 33182286 33182812 -84679815 - Charlie2 DNA MER1_type -378 2484 1885 565 279 17 6 chr9 33182816 33182988 -84679639 - L1M4 LINE L1 -1211 5577 5404 * 3625 193 31 34 chr9 33182978 33183904 -84678723 - L1M4 LINE L1 -2086 4702 3779 1384 312 53 37 chr9 33184287 33184906 -84677721 - L1M4 LINE L1 -6148 641 13 3909 234 56 28 chr9 33184922 33185322 -84677305 - L1M4 LINE L1 -1956 4688 4301 1460 194 67 0 chr9 33185322 33185438 -84677189 + AluJo SINE Alu 1 108 -204 189 0 0 0 chr9 33185438 33185459 -84677168 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1460 194 67 0 chr9 33185459 33185625 -84677002 + AluJo SINE Alu 108 302 -10 3909 234 56 28 chr9 33185625 33186606 -84676021 - L1M4 LINE L1 -2343 4301 3268 1872 249 83 42 chr9 33186603 33187242 -84675385 - L1M4 LINE L1 -5870 672 8 * 273 29 0 0 chr9 33187889 33187923 -84674704 + (GA)n Simple_repeat Simple_repeat 1 34 0 367 366 60 48 chr9 33188448 33188866 -84673761 + L2 LINE L2 2552 2974 -340 223 338 52 0 chr9 33189025 33189102 -84673525 + L2 LINE L2 3184 3264 -49 213 244 67 22 chr9 33189197 33189287 -84673340 - MIR SINE MIR -50 212 119 220 186 0 0 chr9 33189802 33189845 -84672782 + (TG)n Simple_repeat Simple_repeat 2 44 0 481 250 27 20 chr9 33191043 33191191 -84671436 - L1ME2 LINE L1 -1922 4224 4076 289 294 33 28 chr9 33191194 33191374 -84671253 + L1ME2 LINE L1 4218 4398 -1748 1626 200 20 0 chr9 33191376 33191671 -84670956 + AluJo SINE Alu 1 301 -11 453 297 62 39 chr9 33191716 33192053 -84670574 + L1ME2 LINE L1 5786 6130 -34 1164 172 38 0 chr9 33192197 33192406 -84670221 + AluJb SINE Alu 1 217 -95 22 0 0 0 chr9 33193281 33193303 -84669324 + AT_rich Low_complexity Low_complexity 1 22 0 208 308 56 56 chr9 33193342 33193449 -84669178 + L2 LINE L2 3156 3262 -10 2547 55 0 3 chr9 33193751 33194059 -84668568 + AluY SINE Alu 1 307 -4 29 28 0 0 chr9 33195371 33195407 -84667220 + AT_rich Low_complexity Low_complexity 1 36 0 2045 210 115 0 chr9 33197282 33197735 -84664892 - MLT1D LTR MaLR 0 505 1 283 343 0 28 chr9 33197873 33197981 -84664646 + MIR SINE MIR 16 120 -88 633 235 127 117 chr9 33198758 33199278 -84663349 + MLT1H LTR MaLR 9 533 -16 1946 217 103 110 chr9 33199421 33200169 -84662458 + MER21B LTR ERV1 10 752 -111 310 326 8 0 chr9 33200698 33200827 -84661800 + (TA)n Simple_repeat Simple_repeat 2 131 0 460 214 22 0 chr9 33201038 33201127 -84661500 - MER76 LTR ERV 0 688 598 3946 178 42 30 chr9 33201129 33201590 -84661037 + L1MA9 LINE L1 4249 4703 -1443 2026 39 24 0 chr9 33201590 33201843 -84660784 + L1PA4 LINE L1 5896 6155 0 3946 178 42 30 chr9 33201843 33202284 -84660343 + L1MA9 LINE L1 4703 5162 -984 1017 71 0 8 chr9 33202286 33202413 -84660214 + AluSg SINE Alu 3 128 -182 2917 147 47 56 chr9 33202415 33203027 -84659600 + L1MA9 LINE L1 5632 6238 -74 261 0 0 0 chr9 33203044 33203073 -84659554 + (TAA)n Simple_repeat Simple_repeat 3 31 0 392 238 24 95 chr9 33203111 33203279 -84659348 - MER76 LTR ERV -69 619 464 7551 27 7 0 chr9 33203310 33204816 -84657811 - L1PA3 LINE L1 -1 6154 4642 1850 139 9 54 chr9 33205835 33206151 -84656476 - AluSq SINE Alu -11 302 1 358 186 29 0 chr9 33206419 33206489 -84656138 + MLT1L LTR MaLR 140 211 -404 328 384 0 23 chr9 33206618 33206790 -84655837 + ERVL LTR ERVL 2425 2592 -3172 298 319 130 49 chr9 33207111 33207456 -84655171 + MLT1J2 LTR MaLR 73 445 -5 222 293 13 13 chr9 33208163 33208238 -84654389 + L2 LINE L2 2662 2736 -578 393 277 104 30 chr9 33209824 33210055 -84652572 - LTR33A LTR ERVL -56 467 220 252 326 131 49 chr9 33210169 33210414 -84652213 - LTR33A LTR ERVL -258 265 1 183 346 50 30 chr9 33210842 33210943 -84651684 - MIR SINE MIR -113 149 47 11535 190 50 34 chr9 33211326 33215525 -84647102 - L1MA4A LINE L1 -3 7362 3065 2447 167 17 13 chr9 33215525 33215986 -84646641 - MER4C LTR ERV1 -2 463 1 11535 190 50 34 chr9 33215986 33216916 -84645711 - L1MA4A LINE L1 -4300 3065 2152 2420 118 11 6 chr9 33216917 33217265 -84645362 - THE1B LTR MaLR 0 364 15 326 118 0 0 chr9 33217261 33217312 -84645315 - THE1B LTR MaLR -230 134 84 * 2373 283 111 14 chr9 33217315 33218236 -84644391 - L1MA4A LINE L1 -5537 1672 246 * 4062 173 9 13 chr9 33218234 33218928 -84643699 - THE1-int LTR MaLR -263 1317 627 1124 144 140 22 chr9 33218928 33219157 -84643470 - MSTA LTR MaLR -172 256 1 694 264 35 0 chr9 33219158 33219355 -84643272 - L1MA4A LINE L1 -6979 230 27 205 100 40 0 chr9 33219817 33219867 -84642760 + (TA)n Simple_repeat Simple_repeat 2 53 0 1522 106 0 0 chr9 33220391 33220589 -84642038 - AluSg/x SINE Alu -15 297 100 285 326 61 14 chr9 33221261 33221408 -84641219 + L1MC4a LINE L1 5771 5924 -1884 378 0 0 0 chr9 33221542 33221584 -84641043 + (CA)n Simple_repeat Simple_repeat 2 43 0 33 0 0 0 chr9 33221791 33221824 -84640803 + AT_rich Low_complexity Low_complexity 1 33 0 228 250 0 0 chr9 33222444 33222492 -84640135 + L1MDa LINE L1 655 702 -5838 2818 157 25 4 chr9 33222510 33222995 -84639632 - LOR1a LTR ERV1 -2 495 1 218 179 0 0 chr9 33223190 33223229 -84639398 + (TG)n Simple_repeat Simple_repeat 2 40 0 475 174 0 0 chr9 33223343 33223429 -84639198 + L1PA15-16 LINE L1 1498 1583 -5266 2896 182 18 14 chr9 33223431 33224003 -84638624 + L1PA16 LINE L1 5476 6049 -117 4896 59 11 5 chr9 33224003 33225121 -84637506 + MER11A LTR ERVK 1 1266 0 55634 79 5 2 chr9 33225121 33232316 -84630311 + HERVK11 LTR ERVK 1 7214 -739 5340 254 35 14 chr9 33232322 33234104 -84628523 + L1 LINE L1 2299 4117 -2029 * 8532 135 8 34 chr9 33234080 33235422 -84627205 - THE1C-int LTR MaLR -273 1307 1 2294 148 5 13 chr9 33235422 33235799 -84626828 - THE1C LTR MaLR 0 375 2 1916 159 39 8 chr9 33235801 33236165 -84626462 + L1PA16 LINE L1 5789 6163 -3 1605 151 12 0 chr9 33236166 33236425 -84626202 + L1PB4 LINE L1 5891 6152 -4 259 230 35 46 chr9 33236462 33236549 -84626078 + HAL1 LINE L1 1627 1712 -795 2631 126 3 0 chr9 33237423 33237797 -84624830 - THE1C LTR MaLR 0 375 1 541 268 26 20 chr9 33237825 33237978 -84624649 - MLT1I LTR MaLR -208 201 48 294 180 0 0 chr9 33238645 33238706 -84623921 + (TA)n Simple_repeat Simple_repeat 2 62 0 207 294 0 20 chr9 33238813 33238864 -84623763 + L2 LINE L2 3243 3292 -21 929 165 24 12 chr9 33239150 33239320 -84623307 - MER2 DNA MER2_type -172 173 2 566 254 77 4 chr9 33239705 33239975 -84622652 - L1MB4 LINE L1 -34 6146 5825 202 264 14 14 chr9 33240036 33240108 -84622519 + T-rich Low_complexity Low_complexity 3 74 0 10776 130 25 12 chr9 33241247 33243016 -84619611 + Tigger1 DNA MER2_type 626 2417 -1 231 274 16 32 chr9 33243694 33243818 -84618809 + (CAGAGA)n Simple_repeat Simple_repeat 4 125 0 2022 154 19 47 chr9 33244274 33244638 -84617989 + LTR18A LTR ERVL 2 355 -2 21 36 0 0 chr9 33244783 33244811 -84617816 + AT_rich Low_complexity Low_complexity 1 28 0 255 316 23 30 chr9 33244980 33245113 -84617514 - MLT1L LTR MaLR -8 607 476 330 232 134 108 chr9 33245406 33245600 -84617027 - MLT1L LTR MaLR -414 201 3 218 133 0 22 chr9 33245600 33245645 -84616982 + (CAT)n Simple_repeat Simple_repeat 3 46 0 229 347 0 0 chr9 33245942 33246014 -84616613 + L2 LINE L2 3234 3305 -8 183 129 0 0 chr9 33246471 33246502 -84616125 + (TA)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr9 33247321 33247349 -84615278 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr9 33247588 33247634 -84614993 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr9 33248570 33248605 -84614022 + AT_rich Low_complexity Low_complexity 1 35 0 30 45 0 0 chr9 33248918 33248962 -84613665 + AT_rich Low_complexity Low_complexity 1 44 0 1351 172 27 8 chr9 33249482 33249744 -84612883 + L1MB3 LINE L1 5908 6174 -9 660 203 0 8 chr9 33249774 33249907 -84612720 + FLAM_C SINE Alu 2 133 0 21 57 0 0 chr9 33250413 33250448 -84612179 + AT_rich Low_complexity Low_complexity 1 35 0 1089 260 14 67 chr9 33250711 33251069 -84611558 + MER67D LTR ERV1 1 339 -175 6059 206 26 25 chr9 33251990 33253899 -84608728 + L1MA4 LINE L1 17 1917 -4065 8384 122 42 3 chr9 33253903 33255156 -84607471 + THE1B-int LTR MaLR 280 1580 0 2217 133 33 28 chr9 33255156 33255518 -84607109 + THE1B LTR MaLR 1 364 0 7635 214 38 54 chr9 33255518 33256823 -84605804 + L1MA4 LINE L1 2081 3406 -3076 1638 196 7 17 chr9 33256823 33257114 -84605513 + AluJb SINE Alu 1 288 -24 7635 214 38 54 chr9 33257114 33259978 -84602649 + L1MA4 LINE L1 3406 6116 -366 557 96 0 0 chr9 33259981 33260054 -84602573 - LTR1 LTR ERV1 0 785 713 2695 221 15 38 chr9 33260054 33260657 -84601970 - HUERS-P2 LTR ERV1 -2099 989 401 779 172 42 48 chr9 33260737 33260771 -84601856 - HUERS-P2 LTR ERV1 -2715 373 340 2355 47 10 3 chr9 33260771 33261067 -84601560 - AluY SINE Alu -13 298 1 779 172 42 48 chr9 33261067 33261340 -84601287 - HUERS-P2 LTR ERV1 -2748 340 5 4030 122 37 79 chr9 33261343 33262163 -84600464 - LTR1 LTR ERV1 0 785 1 1580 203 3 29 chr9 33262163 33262538 -84600089 + L1MA4 LINE L1 6116 6480 -2 359 296 166 14 chr9 33262829 33263052 -84599575 + L1ME4a LINE L1 5789 6045 -76 221 132 0 75 chr9 33263139 33263192 -84599435 + (TTTTTA)n Simple_repeat Simple_repeat 1 49 0 22 35 0 0 chr9 33263474 33263503 -84599124 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 33263909 33263930 -84598697 + AT_rich Low_complexity Low_complexity 1 21 0 5642 141 14 10 chr9 33264267 33265209 -84597418 - Tigger1 DNA MER2_type 0 2418 1473 1362 181 59 7 chr9 33265210 33265480 -84597147 - AluJo SINE Alu -17 295 12 9070 141 25 2 chr9 33265489 33266941 -84595686 - Tigger1 DNA MER2_type -932 1486 2 918 62 0 0 chr9 33268034 33268146 -84594481 + L1PA7 LINE L1 6033 6144 -10 267 306 104 104 chr9 33269544 33270210 -84592417 + L2 LINE L2 1716 2381 -933 296 363 81 22 chr9 33270634 33270907 -84591720 + L2 LINE L2 2563 2851 -463 * 590 279 36 27 chr9 33270904 33271126 -84591501 + MIR SINE MIR 39 262 0 183 278 62 10 chr9 33271326 33271423 -84591204 - L2 LINE L2 -94 3219 3118 2237 111 3 0 chr9 33271622 33271920 -84590707 + AluSg SINE Alu 3 301 -9 225 0 0 0 chr9 33272408 33272433 -84590194 + (A)n Simple_repeat Simple_repeat 1 25 0 7090 193 134 16 chr9 33272824 33274393 -84588234 + MER52A LTR ERV1 1 1755 0 387 327 51 33 chr9 33276249 33276463 -84586164 + L1MC/D LINE L1 5425 5642 -2166 249 286 57 29 chr9 33276627 33276732 -84585895 - L2 LINE L2 -1292 2022 1915 26 50 0 0 chr9 33276732 33276772 -84585855 + AT_rich Low_complexity Low_complexity 1 40 0 2294 97 0 7 chr9 33278364 33278664 -84583963 + AluSc SINE Alu 1 298 -11 2146 128 0 0 chr9 33278964 33279269 -84583358 + AluSx SINE Alu 1 305 -7 7024 118 2 5 chr9 33279272 33280415 -84582212 + L1MA2 LINE L1 5165 6304 0 3083 164 18 9 chr9 33280915 33281471 -84581156 + MER67C LTR ERV1 150 710 0 275 345 20 20 chr9 33281497 33281645 -84580982 + L2 LINE L2 2631 2778 -536 * 434 252 19 0 chr9 33281644 33281747 -84580880 - MIR SINE MIR -11 251 147 4961 152 23 22 chr9 33282360 33283362 -84579265 + L1PB4 LINE L1 5153 6152 -4 1069 226 124 3 chr9 33283872 33284186 -84578441 - MER119 DNA MER1_type 0 583 232 346 317 111 31 chr9 33284235 33284437 -84578190 + MIR SINE MIR 8 228 -34 180 0 0 0 chr9 33285469 33285489 -84577138 + (A)n Simple_repeat Simple_repeat 1 20 0 522 253 143 11 chr9 33286906 33287088 -84575539 - MIR SINE MIR -34 228 23 422 244 46 30 chr9 33287562 33287693 -84574934 - MER94 DNA DNA 0 134 2 21 36 0 0 chr9 33292276 33292304 -84570323 + AT_rich Low_complexity Low_complexity 1 28 0 219 24 49 24 chr9 33292509 33292550 -84570077 + (TA)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr9 33292788 33292812 -84569815 + AT_rich Low_complexity Low_complexity 1 24 0 324 313 116 25 chr9 33293528 33293726 -84568901 + HAL1b LINE L1 263 478 -870 21 0 0 0 chr9 33293920 33293941 -84568686 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr9 33294010 33294036 -84568591 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr9 33294139 33294173 -84568454 + AT_rich Low_complexity Low_complexity 1 34 0 229 223 91 25 chr9 33294234 33294355 -84568272 + L1M4 LINE L1 4132 4260 -1886 27 49 0 0 chr9 33294382 33294423 -84568204 + AT_rich Low_complexity Low_complexity 1 41 0 292 310 62 18 chr9 33296518 33296631 -84565996 - MIR SINE MIR -131 131 14 295 331 88 14 chr9 33296961 33297109 -84565518 + MIR3 SINE MIR 29 187 -21 26 0 0 0 chr9 33297786 33297812 -84564815 + AT_rich Low_complexity Low_complexity 1 26 0 25735 69 7 0 chr9 33299598 33302957 -84559670 - L1P LINE L1 -2753 3393 11 21 0 0 0 chr9 33302973 33302994 -84559633 + AT_rich Low_complexity Low_complexity 1 21 0 221 273 169 0 chr9 33304110 33304187 -84558440 + L2 LINE L2 3224 3313 0 296 245 10 31 chr9 33304518 33304616 -84558011 + MIR SINE MIR 27 122 -86 2073 114 14 0 chr9 33305517 33305806 -84556821 - AluSx SINE Alu -19 293 1 238 311 148 8 chr9 33306554 33306676 -84555951 - MIR SINE MIR -122 140 2 805 182 89 53 chr9 33306967 33307192 -84555435 - MER46A DNA MER2_type -2 234 2 346 359 43 0 chr9 33307379 33307496 -84555131 + MIR SINE MIR 33 154 -108 495 296 92 7 chr9 33308691 33308843 -84553784 - MIR SINE MIR -64 198 34 625 265 25 0 chr9 33310771 33310933 -84551694 - L2 LINE L2 -659 2655 2490 311 310 23 54 chr9 33312397 33312526 -84550101 + MIR SINE MIR 16 140 -122 5675 72 1 1 chr9 33312620 33313356 -84549271 - L1PA7 LINE L1 -4 6150 5415 490 319 70 25 chr9 33313784 33314098 -84548529 + L1ME4a LINE L1 5577 5904 -217 1824 167 60 6 chr9 33314098 33314445 -84548182 - MER47A DNA MER2_type 0 366 1 3598 170 16 3 chr9 33314454 33315061 -84547566 + Tigger7 DNA MER2_type 1 615 -1872 1712 148 65 6 chr9 33315062 33315386 -84547241 + MER61A LTR ERV1 1 343 0 2547 186 46 11 chr9 33315387 33315913 -84546714 + MER61A-int LTR ERV1 2 545 -4672 2489 66 0 0 chr9 33315984 33316286 -84546341 + AluSc SINE Alu 3 304 -5 21 57 0 0 chr9 33317569 33317604 -84545023 + AT_rich Low_complexity Low_complexity 1 35 0 31 96 0 0 chr9 33318116 33318210 -84544417 + AT_rich Low_complexity Low_complexity 1 94 0 374 268 60 38 chr9 33318667 33318850 -84543777 + L1ME LINE L1 5359 5545 -576 285 301 96 45 chr9 33319329 33319528 -84543099 - L1ME3A LINE L1 -1 6169 5961 848 304 91 43 chr9 33319585 33320190 -84542437 - L1ME3A LINE L1 -214 5956 5323 * 2371 309 49 30 chr9 33320183 33321063 -84541564 + L1PA15 LINE L1 6 902 -5885 * 13541 214 27 32 chr9 33321046 33326668 -84535959 + L1PA15 LINE L1 1221 6813 -3 398 274 261 14 chr9 33326724 33327210 -84535417 - L1ME3A LINE L1 -810 5336 4731 23 0 0 0 chr9 33327900 33327923 -84534704 + AT_rich Low_complexity Low_complexity 1 23 0 243 347 40 5 chr9 33328142 33328341 -84534286 + L1 LINE L1 3628 3833 -2313 8164 177 32 12 chr9 33328870 33331414 -84531213 - L1MA5A LINE L1 -8 6991 4393 9398 80 1 2 chr9 33331414 33333463 -84529164 - L1PA4 LINE L1 0 6155 4106 8164 177 32 12 chr9 33333463 33333482 -84529145 - L1MA5A LINE L1 -2606 4393 4376 997 205 9 5 chr9 33334105 33334329 -84528298 + L1MA7 LINE L1 6061 6285 -6 30 59 0 0 chr9 33334525 33334576 -84528051 + AT_rich Low_complexity Low_complexity 1 51 0 13736 193 66 16 chr9 33335102 33339298 -84523329 - L1MA5A LINE L1 -2437 4411 1 229 227 61 0 chr9 33339747 33339813 -84522814 - HsTC2 DNA Tc2 -1605 293 224 320 309 75 30 chr9 33340225 33340426 -84522201 - L1ME LINE L1 -350 5771 5562 227 217 0 33 chr9 33341563 33341623 -84521004 + L1MB1 LINE L1 6020 6077 -91 573 188 0 0 chr9 33341633 33341745 -84520882 + L1MB1 LINE L1 6044 6155 -13 210 253 121 12 chr9 33341822 33341905 -84520722 - MER5B DNA MER1_type 0 178 87 212 281 0 10 chr9 33342101 33342197 -84520430 + CT-rich Low_complexity Low_complexity 2 96 0 188 373 78 0 chr9 33342392 33342494 -84520133 + L2 LINE L2 3112 3221 -51 750 318 5 9 chr9 33343350 33343564 -84519063 + MIR SINE MIR 35 247 -15 273 412 8 0 chr9 33344215 33344334 -84518293 - L2 LINE L2 0 3272 3153 21 71 0 0 chr9 33344348 33344390 -84518237 + AT_rich Low_complexity Low_complexity 1 42 0 49 60 0 0 chr9 33344452 33344536 -84518091 + AT_rich Low_complexity Low_complexity 1 84 0 8798 125 29 4 chr9 33344742 33346859 -84515768 - L1PA11 LINE L1 -16 6158 3854 186 103 0 0 chr9 33347213 33347242 -84515385 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 30 27 0 0 chr9 33347427 33347464 -84515163 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr9 33347548 33347580 -84515047 + AT_rich Low_complexity Low_complexity 1 32 0 644 169 7 63 chr9 33347580 33347722 -84514905 - AluJo SINE Alu -178 134 1 264 343 59 15 chr9 33348022 33348226 -84514401 - L1MC/D LINE L1 -1927 5881 5669 2452 66 0 3 chr9 33348532 33348834 -84513793 + AluY SINE Alu 1 301 -10 22 35 0 0 chr9 33348872 33348901 -84513726 + AT_rich Low_complexity Low_complexity 1 29 0 268 322 0 35 chr9 33349338 33349425 -84513202 - HAL1b LINE L1 -803 545 462 981 40 0 16 chr9 33349443 33349569 -84513058 - L1PA6 LINE L1 -4 6150 6027 227 228 14 41 chr9 33349700 33349845 -84512782 + (TAA)n Simple_repeat Simple_repeat 2 142 0 675 93 56 0 chr9 33350876 33350984 -84511643 - L1MA3 LINE L1 0 6305 6192 711 101 0 18 chr9 33350984 33351107 -84511520 + L1MA3 LINE L1 6125 6245 -58 536 155 0 0 chr9 33351693 33351790 -84510837 + L1MA9 LINE L1 6181 6277 -35 7227 41 7 0 chr9 33352226 33353846 -84508781 - L1PA5 LINE L1 -11 6143 4517 30 59 0 0 chr9 33354106 33354157 -84508470 + AT_rich Low_complexity Low_complexity 1 51 0 458 258 93 41 chr9 33355301 33355495 -84507132 + MIR SINE MIR 24 227 -35 1205 258 105 40 chr9 33355510 33356033 -84506594 - MLT1E1 LTR MaLR 0 654 98 270 0 0 0 chr9 33356063 33356093 -84506534 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 2260 142 11 0 chr9 33356093 33356460 -84506167 - L1PB1 LINE L1 -5 6146 5776 3470 136 17 8 chr9 33356470 33357315 -84505312 + L1PB1 LINE L1 4919 5773 -378 2026 127 3 10 chr9 33357863 33358162 -84504465 + AluSg SINE Alu 1 297 -13 1926 174 31 6 chr9 33358387 33358743 -84503884 + MSTB LTR MaLR 1 365 -61 1016 249 19 8 chr9 33358785 33359042 -84503585 - AluJb SINE Alu -52 260 1 345 138 35 0 chr9 33359047 33359105 -84503522 + MSTB LTR MaLR 366 425 -1 237 310 23 32 chr9 33359195 33359293 -84503334 - MIR SINE MIR -57 151 54 900 133 28 7 chr9 33359780 33359923 -84502704 + MER30 DNA MER1_type 85 230 0 3137 177 25 13 chr9 33359924 33360604 -84502023 - L1 LINE L1 -1901 4245 3472 189 0 0 0 chr9 33360608 33360629 -84501998 + (TG)n Simple_repeat Simple_repeat 2 22 0 227 93 23 0 chr9 33360632 33360675 -84501952 + (TA)n Simple_repeat Simple_repeat 1 44 0 669 200 35 58 chr9 33360675 33360905 -84501722 - L1MDb LINE L1 -4961 1119 896 3304 81 7 2 chr9 33360936 33361369 -84501258 + LTR3b LTR ERVK 3 437 0 557 176 9 9 chr9 33361480 33361588 -84501039 + HERVK3 LTR ERVK 55 162 -7081 * 1112 146 1 1 chr9 33361584 33361778 -84500849 + HERVK3 LTR ERVK 5188 5579 -366 3432 76 7 0 chr9 33361816 33362250 -84500377 + LTR3b LTR ERVK 1 437 0 415 300 20 10 chr9 33362277 33362477 -84500150 - L1MDb LINE L1 -5182 888 687 230 79 0 26 chr9 33362791 33362829 -84499798 + (CAAAA)n Simple_repeat Simple_repeat 4 40 0 660 301 136 98 chr9 33362980 33363978 -84498649 - HAL1 LINE L1 -1375 1132 93 1450 156 71 97 chr9 33363978 33364413 -84498214 + MSTC LTR MaLR 3 426 -2 660 301 136 98 chr9 33364413 33364439 -84498188 - HAL1 LINE L1 -2414 93 69 21 36 0 0 chr9 33366215 33366243 -84496384 + AT_rich Low_complexity Low_complexity 1 28 0 445 230 26 18 chr9 33366251 33366364 -84496263 + MIR SINE MIR 147 260 -2 1390 113 66 14 chr9 33367425 33367638 -84494989 - AluSq SINE Alu -89 224 1 2410 74 3 0 chr9 33368077 33368375 -84494252 + AluSq SINE Alu 1 299 -14 422 146 106 133 chr9 33369137 33369288 -84493339 + MER69 DNA AcHobo 2380 2526 0 277 305 24 18 chr9 33369827 33369991 -84492636 + L1P LINE L1 2161 2325 -3821 262 275 25 0 chr9 33370264 33370344 -84492283 + (TA)n Simple_repeat Simple_repeat 1 82 0 343 108 31 31 chr9 33370517 33370646 -84491981 + (TA)n Simple_repeat Simple_repeat 2 130 0 723 285 160 45 chr9 33370646 33370904 -84491723 + L1M4 LINE L1 2984 3211 -2935 2101 77 0 22 chr9 33370904 33371176 -84491451 + AluSc SINE Alu 35 300 -9 723 285 160 45 chr9 33371176 33371629 -84490998 + L1M4 LINE L1 3211 3777 -2369 1973 132 24 3 chr9 33372835 33373124 -84489503 + AluSx SINE Alu 5 299 -13 2657 128 163 20 chr9 33373124 33373579 -84489048 + MER1A DNA MER1_type 6 525 -4 1746 161 37 3 chr9 33373643 33373942 -84488685 - AluJb SINE Alu 0 312 4 1150 275 57 82 chr9 33375029 33375541 -84487086 - MER45C DNA AcHobo -439 514 16 379 273 125 31 chr9 33375583 33375711 -84486916 + MIR3 SINE MIR 12 151 -57 587 252 145 6 chr9 33375798 33375957 -84486670 + MER5A DNA MER1_type 9 189 0 180 0 0 0 chr9 33377093 33377113 -84485514 + (TC)n Simple_repeat Simple_repeat 2 21 0 755 316 68 28 chr9 33377284 33377534 -84485093 + MER115 DNA AcHobo 61 320 -373 459 210 84 42 chr9 33377736 33377912 -84484715 + MIR SINE MIR 8 193 -63 440 35 17 0 chr9 33377955 33378013 -84484614 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 2279 193 19 14 chr9 33378573 33378998 -84483629 + MER6A DNA MER2_type 1 427 -178 497 115 11 11 chr9 33378999 33379086 -84483541 + L1MA4 LINE L1 6209 6295 -5 1173 123 11 0 chr9 33379137 33379316 -84483311 + MER6A DNA MER2_type 425 605 0 402 252 50 8 chr9 33379484 33379603 -84483024 + MLT2E LTR ERVL 1 124 -504 484 316 79 55 chr9 33381348 33381728 -84480899 - L2 LINE L2 -2 3311 2923 224 375 45 11 chr9 33381784 33381960 -84480667 - L2 LINE L2 -489 2825 2644 1192 53 0 7 chr9 33382840 33382992 -84479635 - L1PA7 LINE L1 -2 6152 6002 198 217 0 0 chr9 33383553 33383622 -84479005 + (TA)n Simple_repeat Simple_repeat 2 70 0 247 239 68 94 chr9 33383897 33384014 -84478613 - L2 LINE L2 -18 3295 3182 1957 148 0 3 chr9 33384106 33384396 -84478231 + AluJb SINE Alu 1 289 -23 530 216 58 47 chr9 33384548 33384738 -84477889 - Charlie1 DNA MER1_type 0 2761 2570 43643 42 1 6 chr9 33384796 33390968 -84471659 - L1PA3 LINE L1 -4 6151 9 4234 215 34 20 chr9 33390976 33392033 -84470594 - Charlie1 DNA MER1_type -214 2547 1476 1083 270 44 100 chr9 33392153 33392416 -84470211 - L1MDa LINE L1 -4341 2380 2104 263 28 28 0 chr9 33392416 33392452 -84470175 + (TTTG)n Simple_repeat Simple_repeat 3 39 0 1083 270 44 100 chr9 33392452 33392837 -84469790 - L1MDa LINE L1 -4617 2104 1699 2000 117 71 31 chr9 33392837 33393187 -84469440 + THE1B LTR MaLR 1 364 0 11613 94 8 2 chr9 33393187 33394758 -84467869 + THE1B-int LTR MaLR 1 1580 0 2181 132 48 25 chr9 33394758 33395114 -84467513 + THE1B LTR MaLR 1 364 0 1083 270 44 100 chr9 33395114 33395542 -84467085 - L1MDa LINE L1 -5019 1702 1298 1894 146 7 0 chr9 33395551 33395861 -84466766 - AluSp SINE Alu 0 312 1 35 24 0 0 chr9 33395909 33395951 -84466676 + AT_rich Low_complexity Low_complexity 1 42 0 2328 191 39 15 chr9 33396700 33397167 -84465460 + Tigger6a DNA MER2_type 1 478 -605 1228 163 21 8 chr9 33397168 33397258 -84465369 - L1M3 LINE L1 -583 5585 5498 1667 170 125 47 chr9 33397258 33397659 -84464968 + MSTB1 LTR MaLR 1 432 0 1228 163 21 8 chr9 33397659 33397807 -84464820 - L1M3 LINE L1 -670 5498 5344 2620 155 34 0 chr9 33397807 33398269 -84464358 + L1MA10 LINE L1 5851 6331 -3 1460 186 15 82 chr9 33398326 33398729 -84463898 + Tigger6a DNA MER2_type 707 1082 -1 551 321 128 45 chr9 33398868 33399335 -84463292 + L2 LINE L2 2805 3310 -3 290 361 90 22 chr9 33399530 33399940 -84462687 + L2 LINE L2 2176 2613 -701 6999 37 10 6 chr9 33400253 33401120 -84461507 - L1PA5 LINE L1 0 6154 5284 1211 225 25 57 chr9 33401124 33401741 -84460886 + L1M3c LINE L1 1294 1930 -4280 2040 151 0 0 chr9 33401741 33402045 -84460582 + AluSx SINE Alu 1 304 -8 1211 225 25 57 chr9 33402045 33402187 -84460440 + L1M3c LINE L1 1930 5208 -1002 2431 159 28 14 chr9 33402188 33402610 -84460017 - MSTA LTR MaLR 0 428 1 7492 171 45 4 chr9 33402610 33403915 -84458712 - MSTA-int LTR MaLR 0 1651 293 5100 151 31 5 chr9 33403934 33404897 -84457730 + L1PA16 LINE L1 5236 6221 -9 1731 246 59 68 chr9 33404904 33405299 -84457328 + L1MA9 LINE L1 2702 3099 -4466 2112 123 10 0 chr9 33405299 33405592 -84457035 - AluSp SINE Alu -15 298 3 1731 246 59 68 chr9 33405592 33406012 -84456615 + L1MA9 LINE L1 3099 3509 -4056 2323 84 3 0 chr9 33406012 33406309 -84456318 - AluY SINE Alu -13 298 1 1731 246 59 68 chr9 33406309 33406473 -84456154 + L1MA9 LINE L1 3509 3673 -3892 * 2126 203 73 17 chr9 33406465 33407065 -84455562 + L1MA9 LINE L1 4065 4698 -2867 6167 202 30 21 chr9 33407094 33409641 -84452986 + L1MA9 LINE L1 5124 7695 -36 378 145 68 33 chr9 33409626 33409755 -84452872 + L1P4 LINE L1 5300 5444 -721 * 1066 214 43 117 chr9 33409751 33410641 -84451986 + L1MCa LINE L1 985 1891 -4535 3721 174 73 11 chr9 33410677 33411033 -84451594 + L1MA9 LINE L1 5422 5755 -557 225 0 0 0 chr9 33411033 33411058 -84451569 + (TA)n Simple_repeat Simple_repeat 1 25 0 3721 174 73 11 chr9 33411058 33411484 -84451143 + L1MA9 LINE L1 5755 6252 -60 18827 173 28 8 chr9 33411493 33418923 -84443704 + L1PA11 LINE L1 5 7610 -2 198 0 0 0 chr9 33418948 33418970 -84443657 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 5631 106 50 5 chr9 33418970 33419261 -84443366 + L1PA14 LINE L1 4067 4343 -1818 5631 99 56 0 chr9 33419261 33420957 -84441670 + L1PA14 LINE L1 4410 6152 -9 5631 106 50 5 chr9 33420957 33420992 -84441635 + L1PA14 LINE L1 4343 6152 -9 336 167 14 0 chr9 33420983 33421055 -84441572 + L1MA9 LINE L1 6240 6312 0 * 307 346 60 37 chr9 33421074 33421291 -84441336 + L2 LINE L2 3048 3269 -3 320 309 8 16 chr9 33421886 33422009 -84440618 - MIR SINE MIR -24 238 117 24 91 0 0 chr9 33422303 33422369 -84440258 + AT_rich Low_complexity Low_complexity 1 66 0 245 318 119 29 chr9 33422376 33422687 -84439940 + L2 LINE L2 1700 2038 -1276 22 70 0 0 chr9 33423571 33423614 -84439013 + AT_rich Low_complexity Low_complexity 1 43 0 1106 38 0 0 chr9 33423614 33423746 -84438881 - L1PA3 LINE L1 -3 6152 6021 1748 137 28 4 chr9 33423760 33424015 -84438612 + AluSx SINE Alu 1 261 -51 227 100 0 25 chr9 33424018 33424058 -84438569 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1208 222 34 66 chr9 33424707 33425085 -84437542 + MLT1A2 LTR MaLR 1 366 -8 1782 168 0 14 chr9 33426784 33427064 -84435563 + AluJb SINE Alu 14 289 -23 237 316 0 0 chr9 33427543 33427600 -84435027 - L2 LINE L2 -10 3262 3206 219 218 0 0 chr9 33427923 33427978 -84434649 + (TA)n Simple_repeat Simple_repeat 2 56 0 2047 170 76 34 chr9 33428483 33429007 -84433620 + L1MB7 LINE L1 5628 6173 -11 235 326 184 43 chr9 33429517 33429658 -84432969 - MIR SINE MIR -98 164 4 245 352 69 28 chr9 33430321 33430367 -84432260 + MIR SINE MIR 22 65 -197 2056 166 22 96 chr9 33430367 33430867 -84431760 + MLT2C2 LTR ERVL 2 464 0 245 352 69 28 chr9 33430867 33430965 -84431662 + MIR SINE MIR 65 172 -90 683 264 10 30 chr9 33431069 33431266 -84431361 + Tigger5 DNA MER2_type 118 310 -2013 * 917 157 0 6 chr9 33431265 33431424 -84431203 + Tigger5 DNA MER2_type 2166 2323 0 6501 260 41 44 chr9 33431424 33435103 -84427524 - L1M4 LINE L1 -3809 3358 2 204 175 35 35 chr9 33435323 33435380 -84427247 + (CTTTA)n Simple_repeat Simple_repeat 2 58 0 250 310 0 0 chr9 33435383 33435441 -84427186 - MER2 DNA MER2_type -8 337 280 1107 187 5 0 chr9 33435470 33435679 -84426948 - MER2 DNA MER2_type -135 210 1 665 290 56 39 chr9 33437068 33437299 -84425328 - MIR SINE MIR -19 243 9 22 70 0 0 chr9 33437930 33437973 -84424654 + AT_rich Low_complexity Low_complexity 1 43 0 27 29 0 0 chr9 33438454 33438488 -84424139 + AT_rich Low_complexity Low_complexity 1 34 0 236 207 17 0 chr9 33439037 33439095 -84423532 - MER67D LTR ERV1 -5 509 451 1446 166 57 44 chr9 33439123 33439519 -84423108 - MER67C LTR ERV1 -243 271 1 22 35 0 0 chr9 33439837 33439866 -84422761 + AT_rich Low_complexity Low_complexity 1 29 0 1998 125 50 36 chr9 33440134 33440493 -84422134 - THE1B LTR MaLR 0 364 1 11395 103 7 0 chr9 33440493 33442060 -84420567 - THE1B-int LTR MaLR 0 1580 3 787 171 56 88 chr9 33442066 33442282 -84420345 - THE1B LTR MaLR -4 360 152 21353 112 9 11 chr9 33442293 33445707 -84416920 + L1PA6 LINE L1 12 3419 -2727 836 128 0 0 chr9 33445696 33445829 -84416798 + L1P LINE L1 4790 4922 -1224 * 14356 65 14 0 chr9 33445830 33448576 -84414051 + L1PA6 LINE L1 3416 6148 -6 190 304 0 0 chr9 33448582 33448628 -84413999 - MIR SINE MIR -158 104 59 948 162 30 0 chr9 33448639 33448806 -84413821 - THE1B LTR MaLR -191 173 2 219 189 0 0 chr9 33448864 33448917 -84413710 + A-rich Low_complexity Low_complexity 1 53 0 1324 83 11 0 chr9 33449461 33449641 -84412986 - AluSg/x SINE Alu -2 310 129 1921 122 31 10 chr9 33450153 33450441 -84412186 - AluSg1 SINE Alu -15 294 1 276 188 0 0 chr9 33450537 33450601 -84412026 + CT-rich Low_complexity Low_complexity 1 64 0 207 139 0 0 chr9 33450600 33450636 -84411991 + (CA)n Simple_repeat Simple_repeat 1 36 0 * 3794 61 2 10 chr9 33451210 33451699 -84410928 + L1PA6 LINE L1 5662 6146 -8 7390 32 0 0 chr9 33451953 33453031 -84409596 - L1PA4 LINE L1 -2 6153 5077 330 340 132 37 chr9 33453453 33453833 -84408794 - L2 LINE L2 -451 2863 2448 223 356 77 0 chr9 33453831 33454025 -84408602 - L2 LINE L2 -1777 1537 1329 * 2513 158 6 53 chr9 33454150 33454675 -84407952 + L1MB3 LINE L1 5683 6182 -1 3879 32 4 0 chr9 33455047 33455508 -84407119 - L1PA3 LINE L1 0 6155 5693 1750 13 18 0 chr9 33455508 33455732 -84406895 + L1P LINE L1 4276 4503 -1643 464 350 45 12 chr9 33455919 33456162 -84406465 - MIR SINE MIR -10 252 2 234 0 0 0 chr9 33457786 33457812 -84404815 + (TG)n Simple_repeat Simple_repeat 2 27 0 427 328 72 19 chr9 33457891 33458156 -84404471 - L1ME4a LINE L1 -253 5868 5590 23 33 0 0 chr9 33458383 33458413 -84404214 + AT_rich Low_complexity Low_complexity 1 30 0 247 283 220 25 chr9 33458441 33458600 -84404027 - L2 LINE L2 -86 3227 3038 10233 137 10 33 chr9 33458903 33459034 -84403593 - L1P LINE L1 -1105 5041 4909 192 77 0 0 chr9 33459034 33459060 -84403567 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 10233 137 10 33 chr9 33459060 33459084 -84403543 - L1P LINE L1 -1237 4909 4886 2073 67 8 0 chr9 33459084 33459352 -84403275 - L1PA7 LINE L1 -7 6147 5878 10233 137 10 33 chr9 33459352 33461113 -84401514 - L1P LINE L1 -1260 4886 3168 419 339 93 36 chr9 33462052 33462300 -84400327 + HAL1 LINE L1 2246 2507 0 3023 188 48 75 chr9 33462863 33463955 -84398672 + MER52A LTR ERV1 1 1008 -327 473 221 24 0 chr9 33463959 33464086 -84398541 + L1MA9 LINE L1 5952 6081 -231 475 204 28 0 chr9 33464089 33464197 -84398430 + L1MA9 LINE L1 6181 6291 -21 1865 178 3 13 chr9 33464259 33464574 -84398053 - AluJo SINE Alu 0 312 1 21 0 0 0 chr9 33464660 33464681 -84397946 + AT_rich Low_complexity Low_complexity 1 21 0 1167 161 0 5 chr9 33464736 33464935 -84397692 - Tigger5 DNA MER2_type 0 2323 2126 469 227 0 0 chr9 33464952 33465049 -84397578 - Tigger5 DNA MER2_type -2217 106 10 587 330 107 18 chr9 33465335 33465744 -84396883 - L1ME LINE L1 -385 5736 5297 269 279 26 51 chr9 33465849 33466065 -84396562 - L1ME LINE L1 -638 5507 5296 401 288 76 60 chr9 33466066 33466382 -84396245 - L1ME LINE L1 -1799 4330 4010 264 236 11 22 chr9 33466382 33466471 -84396156 - L1ME LINE L1 -5059 1060 973 1166 60 0 7 chr9 33466486 33467138 -84395489 - AluY SINE Alu -20 291 144 5209 136 23 5 chr9 33466497 33466980 -84395647 - L1PA16 LINE L1 0 6166 5693 2478 60 0 0 chr9 33466980 33467281 -84395346 - AluY SINE Alu -10 301 1 5209 136 23 5 chr9 33467281 33467635 -84394992 - L1PA16 LINE L1 -473 5693 5347 369 0 0 0 chr9 33467635 33467676 -84394951 + (TTA)n Simple_repeat Simple_repeat 2 42 0 5209 136 23 5 chr9 33467676 33468371 -84394256 - L1PA16 LINE L1 -819 5347 4600 3844 207 53 41 chr9 33468371 33469329 -84393298 - MER52A LTR ERV1 0 1755 1 553 229 65 0 chr9 33469329 33469518 -84393109 - L1PA16 LINE L1 -1543 4603 4387 627 238 22 6 chr9 33469525 33469706 -84392921 - L1 LINE L1 -1631 4515 4332 392 348 24 52 chr9 33469733 33470061 -84392566 - L1ME LINE L1 -5357 762 444 27 49 0 0 chr9 33470314 33470355 -84392272 + AT_rich Low_complexity Low_complexity 1 41 0 261 0 0 0 chr9 33470975 33471004 -84391623 + (TG)n Simple_repeat Simple_repeat 2 30 0 5368 114 22 97 chr9 33471030 33471606 -84391021 + Tigger3b DNA MER2_type 3 425 -2604 1918 155 0 10 chr9 33471606 33471909 -84390718 + AluJb SINE Alu 1 300 -12 5368 114 22 97 chr9 33471909 33472660 -84389967 + Tigger3b DNA MER2_type 425 1231 -1 186 133 0 0 chr9 33472660 33472690 -84389937 + (TA)n Simple_repeat Simple_repeat 2 31 0 695 238 61 6 chr9 33473239 33473403 -84389224 - MLT1D LTR MaLR 0 505 333 1728 210 103 19 chr9 33473407 33473941 -84388686 + MLT1D LTR MaLR 1 621 -5 577 186 113 0 chr9 33473973 33474097 -84388530 - MLT1D LTR MaLR -346 159 22 37 39 0 0 chr9 33474700 33474751 -84387876 + AT_rich Low_complexity Low_complexity 1 51 0 613 332 37 8 chr9 33474826 33475067 -84387560 + LTR16A LTR ERVL 203 450 0 443 224 28 0 chr9 33475148 33475255 -84387372 - MIR SINE MIR -22 240 131 6397 141 19 11 chr9 33475435 33475625 -84387002 - L1PB1 LINE L1 0 6151 5964 243 0 0 0 chr9 33475625 33475652 -84386975 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1923 109 11 25 chr9 33475652 33475935 -84386692 - AluSg SINE Alu -31 279 1 6397 141 19 11 chr9 33475935 33477777 -84384850 - L1PB1 LINE L1 -186 5965 4110 1336 219 4 0 chr9 33477877 33478155 -84384472 - L1PB1 LINE L1 -2299 3847 3569 28 0 0 0 chr9 33478221 33478249 -84384378 + AT_rich Low_complexity Low_complexity 1 28 0 227 287 82 20 chr9 33478436 33478631 -84383996 + L1M4 LINE L1 2956 3162 -2984 547 278 42 42 chr9 33478953 33479144 -84383483 + MIR SINE MIR 71 261 -1 1927 272 107 40 chr9 33479646 33480375 -84382252 + MER69B DNA AcHobo 17 794 -432 1856 169 49 3 chr9 33480375 33480700 -84381927 - MER2 DNA MER2_type 0 345 6 1026 205 63 24 chr9 33480712 33481043 -84381584 + MER69B DNA AcHobo 801 1144 -82 504 232 65 0 chr9 33481099 33481237 -84381390 + L1M4 LINE L1 840 986 -5556 297 236 32 32 chr9 33481882 33482005 -84380622 - MER113 DNA MER1_type? -386 135 13 3431 76 0 9 chr9 33482472 33482920 -84379707 - MLT2A1 LTR ERVL 0 444 1 200 290 16 16 chr9 33483228 33483290 -84379337 + MIR3 SINE MIR 133 194 -14 1627 208 0 26 chr9 33484368 33484676 -84377951 - AluJo SINE Alu -12 300 1 245 282 181 13 chr9 33484877 33485026 -84377601 - MIR SINE MIR -3 259 86 2780 123 17 0 chr9 33485206 33485620 -84377007 - MSTA LTR MaLR 0 428 8 409 283 29 43 chr9 33487607 33487745 -84374882 + MER97b DNA MER1_type? 3 138 -915 771 284 139 23 chr9 33487820 33488208 -84374419 + L1ME2 LINE L1 61 493 -5577 404 268 95 48 chr9 33488325 33488493 -84374134 + L1ME2 LINE L1 272 447 -5623 1360 256 54 55 chr9 33488495 33489146 -84373481 + L1ME2 LINE L1 476 1118 -4962 1826 173 3 10 chr9 33489146 33489459 -84373168 + AluJb SINE Alu 1 311 -1 1360 256 54 55 chr9 33489459 33489497 -84373130 + L1ME2 LINE L1 1118 1155 -4925 2347 76 3 0 chr9 33489584 33489886 -84372741 + AluY SINE Alu 1 303 -8 4164 121 13 1 chr9 33489894 33490572 -84372055 - L1P LINE L1 -2804 3342 2657 2227 97 0 6 chr9 33490572 33490891 -84371736 + L1PA8 LINE L1 5849 6166 -6 904 276 35 30 chr9 33490893 33491295 -84371332 + L1ME2 LINE L1 1244 1647 -4614 2005 136 0 13 chr9 33491303 33491605 -84371022 + AluSg SINE Alu 1 298 -12 237 160 40 0 chr9 33491711 33491761 -84370866 + L1MC1 LINE L1 6269 6320 -13 401 187 13 0 chr9 33491790 33491865 -84370762 + AluJb SINE Alu 50 125 -187 270 198 0 0 chr9 33491894 33491965 -84370662 + L1ME2 LINE L1 2060 2170 -3951 4605 84 9 8 chr9 33491975 33492621 -84370006 + L1PA11 LINE L1 5328 5974 -200 289 346 53 30 chr9 33493003 33493136 -84369491 + L2 LINE L2 3136 3271 -1 367 360 90 9 chr9 33494306 33494539 -84368088 + MIR SINE MIR 5 256 -6 226 282 0 12 chr9 33498441 33498526 -84364101 + L1ME2 LINE L1 4437 4520 -1560 181 147 0 29 chr9 33499352 33499386 -84363241 + MER5A DNA MER1_type 128 160 -29 355 237 54 11 chr9 33499449 33499542 -84363085 - L2 LINE L2 -2 3311 3215 355 295 0 27 chr9 33499608 33499720 -84362907 - L2 LINE L2 -280 3033 2925 308 224 0 0 chr9 33499722 33499780 -84362847 + MER5B DNA MER1_type 119 176 -2 1234 118 0 5 chr9 33500342 33500528 -84362099 + L1PB4 LINE L1 5963 6147 -9 1742 134 47 27 chr9 33501412 33501710 -84360917 - AluSx SINE Alu -8 304 1 633 311 39 11 chr9 33501871 33502154 -84360473 + L2 LINE L2 1751 2041 -1273 23295 40 4 3 chr9 33502331 33506015 -84356612 - L1PA4 LINE L1 0 6155 2468 10979 46 1 1 chr9 33506015 33507398 -84355229 + L1PA4 LINE L1 1110 2492 -3654 2554 246 50 18 chr9 33509701 33511064 -84351563 + L1ME2 LINE L1 4618 6023 -75 24 32 0 0 chr9 33511069 33511100 -84351527 + AT_rich Low_complexity Low_complexity 1 31 0 244 231 154 29 chr9 33511111 33511215 -84351412 + L1MC5 LINE L1 7799 7915 -46 2547 33 3 0 chr9 33512922 33513225 -84349402 - AluY SINE Alu -7 304 1 325 59 20 0 chr9 33513227 33513278 -84349349 - L1PB3 LINE L1 0 6154 6103 5714 105 22 46 chr9 33513946 33514802 -84347825 - L1PB3 LINE L1 0 6154 5317 1978 147 10 0 chr9 33514802 33515095 -84347532 - AluSx SINE Alu -16 296 1 5714 105 22 46 chr9 33515095 33515223 -84347404 - L1PB3 LINE L1 -837 5317 5187 8463 184 45 29 chr9 33515223 33517274 -84345353 + L1PB3 LINE L1 3102 5185 -961 25 0 0 0 chr9 33517450 33517475 -84345152 + AT_rich Low_complexity Low_complexity 1 25 0 363 251 57 80 chr9 33518365 33518540 -84344087 - HAL1 LINE L1 -597 1910 1740 1181 261 51 39 chr9 33518577 33518962 -84343665 + MLT1D LTR MaLR 127 505 0 996 229 46 23 chr9 33518963 33519269 -84343358 + MLT1D-int LTR MaLR 2 314 -1057 1181 203 54 0 chr9 33519477 33519738 -84342889 + MLT1D-int LTR MaLR 332 606 -765 666 258 41 5 chr9 33519873 33520067 -84342560 + MLT1D-int LTR MaLR 664 864 -507 447 186 10 21 chr9 33520210 33520307 -84342320 - L1MC5 LINE L1 -734 7227 7132 1991 144 0 0 chr9 33520340 33520625 -84342002 + AluSx SINE Alu 1 285 -27 605 255 91 12 chr9 33520635 33520878 -84341749 - LTR37B LTR ERV1 -8 460 199 1761 181 0 0 chr9 33521004 33521297 -84341330 - AluJb SINE Alu -19 293 1 520 290 100 24 chr9 33521931 33522273 -84340354 + LTR1 LTR ERV1 28 386 -440 391 195 110 17 chr9 33522430 33522548 -84340079 + LTR28 LTR ERV1 446 574 -446 292 211 58 153 chr9 33522560 33522750 -84339877 + LTR28 LTR ERV1 848 1019 -1 1106 282 272 10 chr9 33523171 33523675 -84338952 + L2 LINE L2 2001 2636 -678 442 228 73 16 chr9 33523687 33523810 -84338817 - LTR33 LTR ERVL -14 507 378 475 288 88 54 chr9 33523849 33524089 -84338538 - LTR33 LTR ERVL -237 284 37 769 296 112 41 chr9 33524091 33524754 -84337873 + L2 LINE L2 2619 3312 -1 249 83 0 0 chr9 33526087 33526123 -84336504 + (CA)n Simple_repeat Simple_repeat 1 36 0 2253 95 46 62 chr9 33527433 33527651 -84334976 - THE1B LTR MaLR -2 362 150 2125 124 0 0 chr9 33527651 33527963 -84334664 + AluSc SINE Alu 1 312 0 2253 95 46 62 chr9 33527963 33528111 -84334516 - THE1B LTR MaLR -214 150 1 2084 166 8 21 chr9 33528153 33528533 -84334094 + THE1C LTR MaLR 1 375 0 321 292 79 54 chr9 33528988 33529493 -84333134 - L1ME3A LINE L1 -218 5952 5428 29 28 0 0 chr9 33529550 33529586 -84333041 + AT_rich Low_complexity Low_complexity 1 36 0 389 356 60 20 chr9 33529654 33529904 -84332723 - HAL1 LINE L1 -833 1674 1415 649 281 33 53 chr9 33530117 33530136 -84332491 - HAL1 LINE L1 0 2507 2489 1524 124 4 26 chr9 33530136 33530369 -84332258 + AluJo SINE Alu 85 312 0 649 281 33 53 chr9 33530369 33530648 -84331979 - HAL1 LINE L1 -18 2489 2215 265 250 158 50 chr9 33530662 33530678 -84331949 + MLT1E1 LTR MaLR 1 14 -579 2029 160 30 28 chr9 33530678 33531040 -84331587 + THE1B LTR MaLR 1 363 -1 265 250 158 50 chr9 33531040 33531143 -84331484 + MLT1E1 LTR MaLR 14 133 -460 * 1153 235 28 7 chr9 33531139 33531546 -84331081 + MLT1E1 LTR MaLR 102 653 -1 1021 266 166 14 chr9 33531715 33532215 -84330412 - HAL1 LINE L1 -544 1963 1388 22 56 0 0 chr9 33532284 33532320 -84330307 + AT_rich Low_complexity Low_complexity 1 36 0 211 242 0 65 chr9 33533424 33533486 -84329141 - MIR3 SINE MIR -49 159 102 1048 228 22 14 chr9 33533487 33533904 -84328723 + MER31A LTR ERV1 1 476 -9 248 299 232 31 chr9 33534904 33535098 -84327529 - L3b LINE CR1 -146 1437 1205 1878 247 116 14 chr9 33535194 33535728 -84326899 + MLT1G LTR MaLR 22 571 -19 204 118 29 0 chr9 33535772 33535806 -84326821 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 22 56 0 0 chr9 33536225 33536261 -84326366 + AT_rich Low_complexity Low_complexity 1 36 0 31 0 0 0 chr9 33537018 33537049 -84325578 + AT_rich Low_complexity Low_complexity 1 31 0 1595 169 35 17 chr9 33537404 33537694 -84324933 - AluJb SINE Alu -17 295 1 23 68 0 0 chr9 33537938 33537982 -84324645 + AT_rich Low_complexity Low_complexity 1 44 0 308 259 87 43 chr9 33538473 33538658 -84323969 + L1M4 LINE L1 5140 5332 -814 23 0 0 0 chr9 33538941 33538964 -84323663 + AT_rich Low_complexity Low_complexity 1 23 0 1506 22 38 0 chr9 33539066 33539249 -84323378 + L1PA2 LINE L1 5965 6154 -1 21 36 0 0 chr9 33539250 33539278 -84323349 + AT_rich Low_complexity Low_complexity 1 28 0 404 300 40 0 chr9 33539449 33539599 -84323028 + HAL1b LINE L1 756 911 -437 4557 67 40 2 chr9 33539827 33540455 -84322172 + L1PA10 LINE L1 5516 6167 -1 509 178 85 23 chr9 33540461 33540590 -84322037 + LTR48B LTR ERV1 426 562 -82 415 316 172 21 chr9 33540919 33541204 -84321423 - L2 LINE L2 -4 3309 2982 2294 157 46 2 chr9 33542565 33542980 -84319647 + Tigger3b DNA MER2_type 1 433 -798 893 264 94 41 chr9 33543727 33544090 -84318537 + MLT1J LTR MaLR 89 470 -41 2282 94 0 49 chr9 33545170 33545499 -84317128 - AluSq SINE Alu 0 313 1 249 303 26 13 chr9 33546726 33546802 -84315825 + L2 LINE L2 3163 3239 -33 4401 169 20 57 chr9 33546852 33548432 -84314195 - L1MA9 LINE L1 -1 6311 4793 524 251 21 5 chr9 33548453 33548644 -84313983 - L1MA9 LINE L1 -2953 3193 3000 1748 209 27 84 chr9 33549629 33550118 -84312509 + MLT2B1 LTR ERVL 1 461 -59 345 93 0 0 chr9 33550118 33550172 -84312455 + (GA)n Simple_repeat Simple_repeat 1 54 0 231 36 0 0 chr9 33550172 33550200 -84312427 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 171 0 0 chr9 33550203 33550244 -84312383 + MLT2D LTR ERVL 374 414 0 740 155 0 0 chr9 33550852 33550968 -84311659 + FLAM_C SINE Alu 3 118 -15 38233 87 13 9 chr9 33550986 33556655 -84305972 + L1P2 LINE L1 1 5691 -463 241 242 174 30 chr9 33556667 33556799 -84305828 + L1ME LINE L1 5589 5739 -425 522 245 86 7 chr9 33557073 33557224 -84305403 + MIR SINE MIR 97 259 -3 511 299 72 6 chr9 33558218 33558385 -84304242 - MER5B DNA MER1_type 0 178 1 509 314 48 23 chr9 33559004 33559423 -84303204 + HAL1b LINE L1 285 589 -759 225 0 0 0 chr9 33559661 33559686 -84302941 + (TC)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr9 33559685 33559709 -84302918 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 429 186 0 0 chr9 33559780 33559909 -84302718 + (TA)n Simple_repeat Simple_repeat 1 129 0 478 298 27 5 chr9 33560767 33560955 -84301672 + L1ME LINE L1 5627 5818 -303 1736 167 58 14 chr9 33561464 33561823 -84300804 - THE1C LTR MaLR 0 375 1 2742 154 29 0 chr9 33563257 33563781 -84298846 + L1MC/D LINE L1 5184 5722 -611 1036 275 175 10 chr9 33563781 33564199 -84298428 - MLT1H LTR MaLR -35 514 28 978 207 88 128 chr9 33564647 33565068 -84297559 + MLT1C LTR MaLR 95 460 -7 29 0 0 0 chr9 33565349 33565378 -84297249 + AT_rich Low_complexity Low_complexity 1 29 0 221 217 0 14 chr9 33565973 33566042 -84296585 + (CATATA)n Simple_repeat Simple_repeat 2 69 0 582 240 31 158 chr9 33566541 33567054 -84295573 + L1ME3 LINE L1 5491 5938 -224 899 120 0 125 chr9 33567280 33567464 -84295163 - MER1B DNA MER1_type 0 339 179 379 197 0 0 chr9 33567478 33567539 -84295088 - MER1B DNA MER1_type -276 61 1 3990 125 24 0 chr9 33569220 33569838 -84292789 - MER41B LTR ERV1 0 635 3 701 224 7 0 chr9 33570603 33570750 -84291877 - MER58A DNA MER1_type -34 190 43 353 282 17 34 chr9 33571122 33571239 -84291388 + MIR SINE MIR 117 231 -31 463 306 69 26 chr9 33571247 33571479 -84291148 - MIR SINE MIR -2 260 19 387 193 50 107 chr9 33572149 33572289 -84290338 + MIR SINE MIR 118 249 -13 401 227 0 11 chr9 33572610 33572698 -84289929 + MER94 DNA DNA 1 87 -47 265 236 182 45 chr9 33573194 33573304 -84289323 - L2 LINE L2 -1 3312 3188 519 348 150 9 chr9 33574431 33575060 -84287567 - L2 LINE L2 0 3272 2550 1911 102 4 15 chr9 33575769 33576034 -84286593 + AluSx SINE Alu 32 293 -19 247 383 19 32 chr9 33576541 33576695 -84285932 - MIR3 SINE MIR -24 184 33 3532 159 52 4 chr9 33577206 33577893 -84284734 + L1P3 LINE L1 2 721 -5154 1933 243 66 31 chr9 33578265 33579043 -84283584 - L1ME3A LINE L1 -74 6096 5275 9310 35 1 0 chr9 33579143 33580351 -84282276 - L1P LINE L1 -2503 3643 2435 13398 28 4 8 chr9 33580451 33582492 -84280135 + L1P1 LINE L1 3695 5721 -434 1737 141 10 10 chr9 33582620 33582926 -84279701 + AluY SINE Alu 2 307 -4 912 271 60 64 chr9 33582993 33584003 -84278624 + L1MEc LINE L1 2023 3003 -3212 589 160 134 8 chr9 33584024 33584143 -84278484 - AluJo SINE Alu -178 134 1 670 288 68 21 chr9 33584426 33584763 -84277864 - L1ME3A LINE L1 -1119 5027 4675 3045 55 0 0 chr9 33584811 33585213 -84277414 - L1PA5 LINE L1 -1222 4924 4523 7145 39 23 0 chr9 33585219 33586411 -84276216 + L1PA5 LINE L1 4939 6150 -4 486 277 65 19 chr9 33586424 33586579 -84276048 + FRAM SINE Alu 1 155 -21 293 260 39 0 chr9 33586581 33586658 -84275969 + L1MEc LINE L1 4086 4165 -2050 1775 15 0 0 chr9 33586794 33586991 -84275636 + AluYa5 SINE Alu 115 311 0 14809 155 8 18 chr9 33587089 33589983 -84272644 - L1P LINE L1 -1597 4549 1684 300 111 22 0 chr9 33590194 33590239 -84272388 + HERVL LTR ERVL 1326 1371 -4283 603 131 17 0 chr9 33590241 33590358 -84272269 + MLT2A2 LTR ERVL 359 453 0 2187 134 14 6 chr9 33591097 33591448 -84271179 - L1PA16 LINE L1 -3 6163 5810 4990 51 5 8 chr9 33591448 33592095 -84270532 + LTR13 LTR ERVK 3 647 -360 13323 58 74 4 chr9 33592100 33594007 -84268620 + L1P LINE L1 1 2041 -4105 1640 121 72 0 chr9 33594134 33594398 -84268229 - AluSq SINE Alu -30 283 1 4191 221 7 5 chr9 33594398 33595447 -84267180 - L1 LINE L1 -789 5357 4307 1463 205 8 31 chr9 33595446 33595802 -84266825 + L1 LINE L1 3955 4302 -1844 * 428 296 147 35 chr9 33596314 33596682 -84265945 + MLT1I LTR MaLR 1 409 0 187 293 71 91 chr9 33597961 33598060 -84264567 + MIR SINE MIR 39 135 -73 2670 86 103 2 chr9 33598090 33598497 -84264130 - LTR7 LTR ERV1 -2 448 1 2228 106 45 13 chr9 33598497 33598875 -84263752 - HERVH LTR ERV1 0 7713 7324 1251 154 0 5 chr9 33598875 33599096 -84263531 - HERVH LTR ERV1 -1894 5819 5600 4203 135 1 0 chr9 33599097 33599758 -84262869 - HERVH LTR ERV1 -2564 5149 4488 1328 108 5 0 chr9 33599760 33599964 -84262663 - HERVH LTR ERV1 -3720 3993 3789 6880 90 21 5 chr9 33600064 33601056 -84261571 - HERVL LTR ERVL -4636 1018 11 2747 206 23 37 chr9 33601056 33601597 -84261030 - LTR9B LTR ERV1 0 644 111 4526 58 7 0 chr9 33601597 33602193 -84260434 + L1PA6 LINE L1 5565 6164 0 2747 206 23 37 chr9 33602193 33602297 -84260330 - LTR9B LTR ERV1 -533 111 7 1859 157 62 37 chr9 33602317 33602858 -84259769 - MLT2A2 LTR ERVL 0 554 1 59 15 0 0 chr9 33602994 33603060 -84259567 + AT_rich Low_complexity Low_complexity 1 66 0 187 324 54 0 chr9 33605188 33605262 -84257365 - MIR SINE MIR -65 143 66 929 291 65 54 chr9 33606310 33606739 -84255888 + L2 LINE L2 2862 3295 -18 2994 182 7 0 chr9 33607057 33607650 -84254977 - L1 LINE L1 -1072 5074 4478 500 240 78 37 chr9 33607873 33608115 -84254512 - MLT1J LTR MaLR -52 459 208 191 343 14 14 chr9 33608325 33608395 -84254232 + L2 LINE L2 3238 3307 -6 222 118 0 0 chr9 33611237 33611271 -84251356 + (T)n Simple_repeat Simple_repeat 1 34 0 478 281 61 54 chr9 33612261 33612539 -84250088 + L2 LINE L2 2349 2628 -686 238 180 80 10 chr9 33613678 33613778 -84248849 + (ATATG)n Simple_repeat Simple_repeat 4 110 0 * 335 191 22 49 chr9 33613746 33613929 -84248698 + (TA)n Simple_repeat Simple_repeat 2 179 0 382 344 48 4 chr9 33614091 33614397 -84248230 + L1MEd LINE L1 1148 1556 -934 2168 125 33 31 chr9 33614453 33614813 -84247814 + THE1B LTR MaLR 1 361 -3 480 288 62 87 chr9 33614955 33615063 -84247564 - L2 LINE L2 -462 2852 2743 204 97 0 0 chr9 33615063 33615094 -84247533 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 480 288 62 87 chr9 33615094 33615294 -84247333 - L2 LINE L2 -571 2743 2552 339 368 15 0 chr9 33615918 33616051 -84246576 - L2 LINE L2 -638 2676 2542 206 381 44 60 chr9 33616170 33616535 -84246092 - L2 LINE L2 -2036 1278 920 11780 93 32 27 chr9 33618123 33620463 -84242164 + HERVH LTR ERV1 633 2987 -4726 790 107 143 0 chr9 33620457 33620597 -84242030 + HERVH LTR ERV1 3140 3299 -4414 * 269 375 35 28 chr9 33620705 33620849 -84241778 + L2 LINE L2 2652 2796 -518 230 282 39 26 chr9 33620848 33620926 -84241701 - L2 LINE L2 -5 3308 3230 * 234 204 19 0 chr9 33621911 33621965 -84240662 + (CATAT)n Simple_repeat Simple_repeat 4 58 0 350 215 10 149 chr9 33622951 33623146 -84239481 - L2 LINE L2 -141 3172 3005 4461 164 28 32 chr9 33623710 33624616 -84238011 + MER49 LTR ERV1 1 902 -21 291 218 58 11 chr9 33625253 33625340 -84237287 + LTR16A LTR ERVL 274 364 -86 640 331 54 15 chr9 33625468 33625800 -84236827 + HERV16 LTR ERVL 1876 2220 -2776 428 254 18 0 chr9 33625914 33626024 -84236603 + MER63 DNA MER1_type 677 788 -273 1557 120 5 5 chr9 33726531 33726748 -84135879 - AluSx SINE Alu -95 217 1 224 316 114 19 chr9 33727086 33727244 -84135383 + L2 LINE L2 3132 3304 -9 196 252 71 123 chr9 33727779 33727934 -84134693 - MIR SINE MIR -51 211 65 399 344 109 5 chr9 33728876 33729097 -84133530 + MIR SINE MIR 8 251 -11 7304 70 157 4 chr9 33729380 33730440 -84132187 + MER11B LTR ERVK 1 1222 -14 2217 123 0 0 chr9 33731841 33732149 -84130478 + AluSx SINE Alu 1 308 -4 958 267 208 16 chr9 33733064 33733504 -84129123 + L2 LINE L2 2791 3313 0 292 283 53 18 chr9 33733500 33733613 -84129014 - MIR3 SINE MIR -8 200 84 * 1621 183 0 0 chr9 33735256 33735530 -84127097 - AluJo SINE Alu -30 282 9 259 264 23 23 chr9 33735936 33736023 -84126604 + L1P LINE L1 5339 5425 -729 21 36 0 0 chr9 33736431 33736459 -84126168 + AT_rich Low_complexity Low_complexity 1 28 0 334 256 250 51 chr9 33736817 33736973 -84125654 + MER5A DNA MER1_type 3 189 0 757 252 65 55 chr9 33737077 33737387 -84125240 - MER102b DNA MER1_type -2 339 27 520 292 23 14 chr9 33738445 33738665 -84123962 - MIR SINE MIR -32 230 5 216 200 0 0 chr9 33739553 33739598 -84123029 + A-rich Low_complexity Low_complexity 4 48 0 344 303 10 0 chr9 33740254 33740353 -84122274 + L1MC4a LINE L1 5462 5561 -2247 4635 136 51 3 chr9 33740359 33741100 -84121527 + L1MA8 LINE L1 5511 6287 -4 845 246 159 30 chr9 33741141 33741544 -84121083 + LTR50 LTR ERVL 9 463 -332 3743 145 11 16 chr9 33741563 33741894 -84120733 + L1PB1 LINE L1 4808 5139 -1012 2151 121 0 10 chr9 33741894 33742199 -84120428 + AluSx SINE Alu 1 302 -10 3743 145 11 16 chr9 33742199 33742731 -84119896 + L1PB1 LINE L1 5139 5664 -487 2158 113 0 20 chr9 33742731 33743031 -84119596 + AluSq SINE Alu 5 298 -15 3743 145 11 16 chr9 33743031 33743159 -84119468 + L1PB1 LINE L1 5664 5791 -360 203 167 0 0 chr9 33743159 33743201 -84119426 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 2841 90 5 3 chr9 33743201 33743569 -84119058 + L1PB1 LINE L1 5782 6150 -1 462 191 161 9 chr9 33743645 33743817 -84118810 + L1MC4a LINE L1 5568 5775 -403 436 229 84 0 chr9 33743832 33743963 -84118664 + L1MC4a LINE L1 5830 5971 -1837 318 275 60 39 chr9 33744031 33744213 -84118414 + L1MC4a LINE L1 6079 6264 -1544 832 194 50 6 chr9 33744249 33744429 -84118198 + AluSx SINE Alu 4 191 -121 320 0 25 0 chr9 33744559 33744599 -84118028 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 850 285 4 48 chr9 33744758 33745028 -84117599 - MIR SINE MIR 0 262 5 509 241 13 102 chr9 33745031 33745267 -84117360 + MER58C DNA MER1_type 1 215 0 2503 167 19 14 chr9 33745293 33745719 -84116908 + MSTA LTR MaLR 1 428 0 301 236 128 68 chr9 33746465 33746613 -84116014 + L1MC5 LINE L1 7730 7886 -75 31 0 0 0 chr9 33746670 33746701 -84115926 + AT_rich Low_complexity Low_complexity 1 31 0 1297 194 58 20 chr9 33746859 33747153 -84115474 - LTR40c LTR ERVL 0 465 161 301 200 7 89 chr9 33747173 33747308 -84115319 - L1MC5 LINE L1 -94 7867 7744 604 197 24 16 chr9 33747311 33747438 -84115189 - LTR40c LTR ERVL -330 135 8 1761 238 29 13 chr9 33747447 33747830 -84114797 - HERVL40 LTR ERVL -2 5528 5140 888 204 82 15 chr9 33748087 33748283 -84114344 + MER63A DNA MER1_type 2 210 0 244 219 78 16 chr9 33748307 33748371 -84114256 - MIR3 SINE MIR -51 157 90 327 309 32 40 chr9 33748673 33748799 -84113828 + L2 LINE L2 3188 3312 -1 2307 161 105 8 chr9 33749730 33750207 -84112420 + Charlie1b DNA MER1_type 1 523 0 21 0 0 0 chr9 33750956 33750977 -84111650 + GC_rich Low_complexity Low_complexity 1 21 0 933 134 70 6 chr9 33752846 33753017 -84109610 - THE1C LTR MaLR 0 375 194 233 161 161 0 chr9 33753369 33753425 -84109202 - THE1C LTR MaLR -319 109 45 3827 134 28 46 chr9 33755342 33755689 -84106938 + LTR26 LTR ERV1 1 334 -269 2279 64 58 3 chr9 33755689 33755984 -84106643 - AluY SINE Alu 0 311 1 3827 134 28 46 chr9 33755984 33756248 -84106379 + LTR26 LTR ERV1 334 601 -2 5065 58 6 2 chr9 33756352 33756993 -84105634 + L1P3 LINE L1 3460 4103 -2043 4234 41 6 8 chr9 33756990 33757503 -84105124 + L1P3 LINE L1 5309 5820 -334 * 4068 266 62 46 chr9 33757724 33758990 -84103637 - HERVL40 LTR ERVL -1582 3948 2663 824 138 27 138 chr9 33759353 33759506 -84103121 - MER20 DNA MER1_type -19 200 78 2181 98 0 53 chr9 33759506 33759824 -84102803 + AluSq SINE Alu 1 301 -12 824 138 27 138 chr9 33759824 33759895 -84102732 - MER20 DNA MER1_type -141 78 1 678 256 73 27 chr9 33760075 33760433 -84102194 - HERVL40 LTR ERVL -4136 1394 958 252 295 135 13 chr9 33760494 33760650 -84101977 - HERVL40 LTR ERVL -5252 278 104 1184 214 40 11 chr9 33760717 33760992 -84101635 - LTR40c LTR ERVL 0 465 183 573 257 116 69 chr9 33760996 33761402 -84101225 + L1MEc LINE L1 1126 1560 -4836 1512 170 20 37 chr9 33761402 33761696 -84100931 - AluJb SINE Alu -23 289 1 573 257 116 69 chr9 33761696 33761780 -84100847 + L1MEc LINE L1 1560 1639 -4757 1646 191 0 4 chr9 33761783 33762056 -84100571 + AluJb SINE Alu 1 272 -40 1190 184 27 12 chr9 33762059 33762315 -84100312 + AluSq SINE Alu 30 289 -24 1706 211 30 49 chr9 33762439 33762800 -84099827 - L1M4 LINE L1 -1198 4948 4597 2071 137 3 0 chr9 33762800 33763093 -84099534 + AluSx SINE Alu 1 294 -18 1706 211 30 49 chr9 33763093 33763200 -84099427 - L1M4 LINE L1 -1549 4597 4489 1525 202 165 40 chr9 33763201 33763703 -84098924 - MLT1F1 LTR MaLR -1 566 6 460 195 62 0 chr9 33763706 33763819 -84098808 - L1M4 LINE L1 -1650 4496 4377 1095 169 0 6 chr9 33763827 33763999 -84098628 - AluJb SINE Alu -8 304 134 2029 143 0 7 chr9 33763999 33764306 -84098321 - AluSx SINE Alu -7 305 1 277 102 20 20 chr9 33764321 33764370 -84098257 - MLT2E LTR ERVL -2 626 578 270 0 0 0 chr9 33764633 33764663 -84097964 + (TG)n Simple_repeat Simple_repeat 2 31 0 2071 116 0 0 chr9 33764665 33764942 -84097685 - AluSx SINE Alu -35 277 1 1972 181 32 83 chr9 33765665 33766157 -84096470 + MLT1C LTR MaLR 1 467 0 2701 202 34 3 chr9 33766157 33766740 -84095887 + L1MB7 LINE L1 5463 6063 -121 646 141 66 8 chr9 33767204 33767325 -84095302 - LOR1b-int LTR ERV1 -3800 4320 4193 2260 87 20 0 chr9 33767326 33767625 -84095002 - AluSx SINE Alu -7 305 1 11517 106 23 22 chr9 33767684 33769478 -84093149 - LOR1b-int LTR ERV1 -3928 4192 2397 1344 133 0 0 chr9 33769478 33769659 -84092968 + AluSx SINE Alu 1 181 -131 6734 154 84 60 chr9 33769664 33772062 -84090565 - LOR1b-int LTR ERV1 -5731 2389 32 2405 157 84 5 chr9 33772067 33772494 -84090133 - LOR1b LTR ERV1 0 461 1 247 294 151 84 chr9 33772507 33772878 -84089749 - L2 LINE L2 -1142 2172 1777 695 110 10 0 chr9 33773153 33773253 -84089374 - AluSg SINE Alu -13 296 196 870 105 0 0 chr9 33773254 33773368 -84089259 - AluSg SINE Alu -196 114 1 23 0 0 0 chr9 33773698 33773721 -84088906 + AT_rich Low_complexity Low_complexity 1 23 0 30402 103 13 56 chr9 33773751 33780182 -84082445 - L1PA7 LINE L1 0 6154 12 24 0 0 0 chr9 33780228 33780252 -84082375 + AT_rich Low_complexity Low_complexity 1 24 0 784 263 0 11 chr9 33780657 33780847 -84081780 + AluJo SINE Alu 118 305 -7 365 231 98 10 chr9 33781244 33781368 -84081259 + MIR SINE MIR 50 188 -63 240 111 0 0 chr9 33782223 33782268 -84080359 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 2152 107 0 4 chr9 33782268 33782549 -84080078 - AluSx SINE Alu -32 280 1 331 305 59 27 chr9 33782897 33783084 -84079543 + L1M4 LINE L1 4415 4607 -1539 33 25 0 0 chr9 33783392 33783432 -84079195 + AT_rich Low_complexity Low_complexity 1 40 0 452 102 72 6 chr9 33783432 33783598 -84079029 + (TA)n Simple_repeat Simple_repeat 1 177 0 26 0 0 0 chr9 33783604 33783630 -84078997 + AT_rich Low_complexity Low_complexity 1 26 0 390 159 80 6 chr9 33783634 33783797 -84078830 + (TA)n Simple_repeat Simple_repeat 2 176 0 818 249 10 61 chr9 33783803 33784100 -84078527 - AluSp SINE Alu -19 284 3 261 0 0 0 chr9 33785160 33785189 -84077438 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2621 32 7 3 chr9 33785684 33785993 -84076634 + AluY SINE Alu 1 310 -1 6467 123 36 6 chr9 33786077 33788128 -84074499 + L1MA2 LINE L1 4188 6304 0 21 0 0 0 chr9 33788128 33788149 -84074478 + AT_rich Low_complexity Low_complexity 1 21 0 360 325 29 48 chr9 33788396 33788605 -84074022 + MIR SINE MIR 2 206 -56 * 409 362 29 14 chr9 33788576 33788783 -84073844 - L2 LINE L2 -975 2339 2130 252 309 94 40 chr9 33790081 33790230 -84072397 - MIR SINE MIR -101 161 5 230 290 30 20 chr9 33790403 33790503 -84072124 - MIR SINE MIR -13 249 149 298 0 0 0 chr9 33791416 33791452 -84071175 + L1MA5 LINE L1 6039 6074 -226 2459 46 10 3 chr9 33791606 33791913 -84070714 + AluY SINE Alu 1 309 -2 439 317 131 6 chr9 33792767 33792950 -84069677 + MIR SINE MIR 2 207 -55 2005 112 6 3 chr9 33793076 33793389 -84069238 - L1MA5A LINE L1 -6 6291 5978 332 394 80 0 chr9 33793487 33793624 -84069003 - MIR3 SINE MIR -57 151 4 547 230 79 43 chr9 33793714 33793752 -84068875 - MLT1J LTR MaLR -19 492 457 1498 134 124 18 chr9 33793752 33794027 -84068600 + AluSg1 SINE Alu 1 304 -5 547 230 79 43 chr9 33794027 33794337 -84068290 - MLT1J LTR MaLR -54 457 108 2475 207 28 32 chr9 33794631 33795282 -84067345 + L1MB7 LINE L1 5476 6123 -61 806 173 0 0 chr9 33795282 33795409 -84067218 - FLAM_C SINE Alu -6 127 1 4147 76 2 13 chr9 33796208 33796762 -84065865 - L1PA8A LINE L1 -2 6129 5582 21 0 0 0 chr9 33796767 33796788 -84065839 + AT_rich Low_complexity Low_complexity 1 21 0 358 283 62 68 chr9 33796960 33797058 -84065569 + L1M4 LINE L1 3651 3749 -2397 1599 185 15 52 chr9 33797058 33797382 -84065245 + AluJo SINE Alu 1 312 0 358 283 62 68 chr9 33797382 33797460 -84065167 + L1M4 LINE L1 3749 3826 -2320 198 0 0 0 chr9 33797460 33797482 -84065145 + (T)n Simple_repeat Simple_repeat 1 22 0 2188 124 0 10 chr9 33797501 33797815 -84064812 + AluSq SINE Alu 1 311 -2 2073 117 3 0 chr9 33797866 33798200 -84064427 + AluSx SINE Alu 1 335 0 545 147 46 18 chr9 33798208 33798317 -84064310 + MLT1H1 LTR MaLR 23 134 -421 629 193 9 0 chr9 33798343 33798457 -84064170 + FLAM_C SINE Alu 1 115 -28 333 68 0 0 chr9 33798464 33798508 -84064119 + (TC)n Simple_repeat Simple_repeat 1 44 0 357 24 0 0 chr9 33798508 33798550 -84064077 + (CA)n Simple_repeat Simple_repeat 1 42 0 915 183 170 54 chr9 33798639 33798956 -84063671 + MLT1H1 LTR MaLR 202 555 0 312 229 42 17 chr9 33799109 33799227 -84063400 + L1ME LINE L1 5617 5737 -384 2006 147 13 0 chr9 33799674 33799980 -84062647 - AluJo SINE Alu -2 310 1 268 238 50 0 chr9 33800931 33801011 -84061616 - MLT1J LTR MaLR 0 511 428 453 280 29 11 chr9 33801109 33801284 -84061343 - MLT1J LTR MaLR -331 180 3 280 272 0 11 chr9 33801345 33801437 -84061190 - L1ME LINE L1 -342 5822 5732 265 243 45 73 chr9 33801715 33801916 -84060711 + L1ME LINE L1 5628 5818 -303 204 67 0 0 chr9 33802482 33802512 -84060115 + (CCA)n Simple_repeat Simple_repeat 3 32 0 1416 186 10 71 chr9 33802877 33803188 -84059439 - AluJo SINE Alu -20 292 1 214 195 0 0 chr9 33803953 33803994 -84058633 + (TA)n Simple_repeat Simple_repeat 1 41 0 1395 139 171 4 chr9 33804774 33805019 -84057608 - AluSc SINE Alu -13 286 1 2212 120 7 0 chr9 33805140 33805448 -84057179 + AluSx SINE Alu 1 310 -2 289 274 140 13 chr9 33806236 33806393 -84056234 - L2 LINE L2 -214 3058 2882 1167 220 92 41 chr9 33806860 33807106 -84055521 + MER20B DNA MER1_type 1 233 -550 216 0 0 0 chr9 33807106 33807130 -84055497 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1167 220 92 41 chr9 33807130 33807154 -84055473 + MER20B DNA MER1_type 233 254 -529 213 39 0 0 chr9 33807154 33807180 -84055447 + (TGG)n Simple_repeat Simple_repeat 3 28 0 1167 220 92 41 chr9 33807180 33807299 -84055328 + MER20B DNA MER1_type 254 411 -372 234 225 146 0 chr9 33807420 33807509 -84055118 + L1MB8 LINE L1 6043 6144 -34 331 340 46 39 chr9 33807581 33807734 -84054893 - L2 LINE L2 -1 3271 3118 975 193 0 68 chr9 33807882 33808089 -84054538 - AluJo SINE Alu -13 299 107 427 154 0 0 chr9 33808089 33808154 -84054473 + AluJ/FLAM SINE Alu 9 73 -239 1193 297 34 25 chr9 33808723 33809373 -84053254 + L1ME LINE L1 4192 4847 -1299 1007 145 0 6 chr9 33809482 33809641 -84052986 + FRAM SINE Alu 1 157 -19 2134 113 7 0 chr9 33809646 33809960 -84052667 + AluSq SINE Alu 1 316 0 318 266 50 13 chr9 33810071 33810353 -84052274 + L1ME LINE L1 5188 5478 -686 2193 131 0 3 chr9 33810396 33810701 -84051926 - AluSg SINE Alu -6 304 1 1573 181 62 11 chr9 33810704 33810860 -84051767 - L1M3 LINE L1 -683 5488 5341 2107 95 11 0 chr9 33810860 33811133 -84051494 - AluSx SINE Alu -12 300 25 1573 181 62 11 chr9 33811133 33811470 -84051157 - L1M3 LINE L1 -830 5341 4970 1841 143 45 0 chr9 33811470 33811854 -84050773 + MLT2B2 LTR ERVL 1 448 -67 256 71 95 0 chr9 33811917 33811959 -84050668 + MLT2B2 LTR ERVL 475 520 0 2886 206 68 17 chr9 33811963 33812665 -84049962 - L1M3 LINE L1 -1181 4965 4214 2388 52 0 14 chr9 33812665 33812987 -84049640 + AluY SINE Alu 1 318 0 2886 206 68 17 chr9 33812987 33813090 -84049537 - L1M3 LINE L1 -1932 4214 4118 3119 136 34 8 chr9 33813223 33813751 -84048876 + MER72 LTR ERV1 181 722 0 702 122 20 41 chr9 33813891 33814038 -84048589 - MER72 LTR ERV1 -398 324 181 3006 201 67 17 chr9 33814170 33814273 -84048354 + L1MB2 LINE L1 4118 4214 -1932 2387 52 0 14 chr9 33814273 33814595 -84048032 - AluY SINE Alu 0 318 1 3006 201 67 17 chr9 33814595 33815298 -84047329 + L1MB2 LINE L1 4214 4965 -1181 256 71 95 0 chr9 33815302 33815344 -84047283 - MLT2B2 LTR ERVL 0 515 470 1841 146 45 0 chr9 33815407 33815791 -84046836 - MLT2B2 LTR ERVL -67 448 1 4208 174 43 13 chr9 33815791 33816128 -84046499 + L1MB2 LINE L1 4970 5295 -876 2120 92 11 0 chr9 33816128 33816401 -84046226 + AluSx SINE Alu 25 300 -12 4208 174 43 13 chr9 33816401 33816560 -84046067 + L1MB2 LINE L1 5295 5448 -723 2348 100 0 3 chr9 33816560 33816870 -84045757 + AluSg SINE Alu 1 309 -1 4208 174 43 13 chr9 33816870 33817538 -84045089 + L1MB2 LINE L1 5448 6170 -1 2402 76 3 0 chr9 33818426 33818717 -84043910 - AluSg SINE Alu -18 292 1 799 267 36 24 chr9 33818872 33819119 -84043508 + MIR SINE MIR 12 261 -1 221 241 0 17 chr9 33820710 33820768 -84041859 + CT-rich Low_complexity Low_complexity 3 59 0 730 246 66 6 chr9 33820921 33821104 -84041523 + MER91A DNA MER1_type 3 196 0 1793 131 32 18 chr9 33821439 33821744 -84040883 - AluSx SINE Alu 0 309 1 283 265 82 41 chr9 33821758 33821856 -84040771 + MIR3 SINE MIR 84 185 -23 262 173 0 93 chr9 33823446 33823521 -84039106 - MIR SINE MIR 0 262 195 211 269 19 0 chr9 33824040 33824092 -84038535 - L2 LINE L2 0 3313 3261 2240 114 0 7 chr9 33825362 33825669 -84036958 - AluSx SINE Alu -7 305 1 2406 97 0 0 chr9 33825904 33826214 -84036413 + AluSg SINE Alu 1 310 0 266 318 24 0 chr9 33827716 33827801 -84034826 - L2 LINE L2 -39 3233 3147 432 328 111 15 chr9 33827852 33828241 -84034386 - L2 LINE L2 -293 2979 2549 2236 93 14 0 chr9 33828875 33829164 -84033463 - AluSc SINE Alu -16 293 1 563 238 100 57 chr9 33829299 33829519 -84033108 + MIR SINE MIR 19 248 -14 303 49 0 0 chr9 33829526 33829567 -84033060 + (CA)n Simple_repeat Simple_repeat 2 42 0 2283 117 3 0 chr9 33829858 33830165 -84032462 + AluSx SINE Alu 1 308 -4 2155 135 0 0 chr9 33832122 33832419 -84030208 - AluSx SINE Alu -15 297 1 3011 193 72 32 chr9 33832618 33833114 -84029513 + MER63C DNA MER1_type 1 536 -524 1673 194 0 0 chr9 33833114 33833398 -84029229 + AluJb SINE Alu 1 284 -28 3011 193 72 32 chr9 33833398 33833620 -84029007 + MER63C DNA MER1_type 536 748 -182 1987 148 10 3 chr9 33833629 33833932 -84028695 + AluSx SINE Alu 1 305 -7 2216 114 3 0 chr9 33834159 33834457 -84028170 + AluSg SINE Alu 1 299 -11 216 97 0 0 chr9 33834818 33834849 -84027778 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 70 0 0 chr9 33834849 33834892 -84027735 + AT_rich Low_complexity Low_complexity 1 43 0 252 194 0 60 chr9 33834913 33834980 -84027647 - MLT2F LTR ERVL -2 661 599 579 251 94 77 chr9 33834999 33835126 -84027501 - MLT2C1 LTR ERVL -40 357 234 762 195 44 15 chr9 33835126 33835304 -84027323 - MLT1E1 LTR MaLR -350 304 64 579 251 94 77 chr9 33835304 33835350 -84027277 - MLT2C1 LTR ERVL -163 234 1 254 218 18 0 chr9 33836046 33836101 -84026526 - L2 LINE L2 0 3272 3217 1941 157 23 0 chr9 33836468 33836767 -84025860 - AluSx SINE Alu -6 306 1 428 202 0 22 chr9 33837069 33837158 -84025469 + MIR SINE MIR 95 181 -81 1299 205 89 17 chr9 33837160 33837453 -84025174 + MER58B DNA MER1_type 28 341 0 285 148 0 115 chr9 33837453 33837514 -84025113 + MIR SINE MIR 209 262 0 365 205 107 8 chr9 33838431 33838553 -84024074 - MLT1J2 LTR MaLR 0 450 317 342 257 97 70 chr9 33838550 33838784 -84023843 - MLT1J2 LTR MaLR -79 371 120 * 293 232 0 29 chr9 33838793 33838862 -84023765 - MLT1J1 LTR MaLR -365 81 15 190 329 134 0 chr9 33838981 33839063 -84023564 + MIR SINE MIR 45 137 -71 1778 198 0 0 chr9 33839066 33839359 -84023268 - AluJb SINE Alu -18 294 2 287 266 51 25 chr9 33839529 33839608 -84023019 - MIR SINE MIR -155 107 27 339 305 107 0 chr9 33839623 33839754 -84022873 + MIR SINE MIR 118 262 0 200 322 161 46 chr9 33840336 33840659 -84021968 + L2 LINE L2 2602 2961 -353 867 98 32 0 chr9 33841024 33841147 -84021480 - AluJo SINE Alu -3 309 183 642 313 40 4 chr9 33842044 33842271 -84020356 + MIR SINE MIR 28 262 0 2414 45 42 0 chr9 33843064 33843352 -84019275 + AluY SINE Alu 1 300 -11 230 274 0 0 chr9 33844393 33844444 -84018183 + L1M2 LINE L1 5612 5662 -635 275 138 224 0 chr9 33844611 33844669 -84017958 - AluS SINE Alu -2 299 229 733 152 15 30 chr9 33844669 33844801 -84017826 - AluJo SINE Alu -119 193 64 477 275 180 0 chr9 33845705 33845883 -84016744 - MIR SINE MIR -19 243 34 2995 177 73 45 chr9 33845986 33846923 -84015704 - L1MDb LINE L1 -4469 1937 942 2823 84 3 6 chr9 33847058 33847414 -84015213 - THE1A LTR MaLR 0 355 1 2098 111 7 7 chr9 33848169 33848467 -84014160 + AluSg SINE Alu 1 298 -12 1267 176 47 4 chr9 33848473 33848728 -84013899 + L1MD3 LINE L1 7730 7995 0 22 0 0 0 chr9 33850121 33850143 -84012484 + AT_rich Low_complexity Low_complexity 1 22 0 525 253 150 16 chr9 33850347 33850600 -84012027 + L2 LINE L2 1810 2096 -1218 199 211 14 14 chr9 33850610 33850681 -84011946 + (TA)n Simple_repeat Simple_repeat 1 71 0 264 272 88 59 chr9 33851250 33851386 -84011241 + MIR SINE MIR 95 234 -28 218 204 0 0 chr9 33851510 33851559 -84011068 + A-rich Low_complexity Low_complexity 1 49 0 1612 135 28 28 chr9 33851607 33851889 -84010738 + THE1C LTR MaLR 94 375 0 2144 113 7 3 chr9 33851968 33852260 -84010367 - AluSx SINE Alu -19 293 1 217 207 216 27 chr9 33852540 33852651 -84009976 + MER5B DNA MER1_type 18 149 -29 229 217 183 0 chr9 33852972 33853032 -84009595 - MER103 DNA DNA -95 71 1 284 304 65 22 chr9 33853702 33853840 -84008787 + MLT1K LTR MaLR 445 588 0 1333 134 193 8 chr9 33854185 33854319 -84008308 - AluJo SINE Alu -18 284 176 218 54 0 27 chr9 33854319 33854356 -84008271 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1333 134 193 8 chr9 33854356 33854460 -84008167 - AluJo SINE Alu -126 176 2 1573 164 98 33 chr9 33854560 33854895 -84007732 - MLT1A1 LTR MaLR -6 359 3 2198 104 3 3 chr9 33855063 33855360 -84007267 - AluSq SINE Alu -16 297 1 22 35 0 0 chr9 33855369 33855398 -84007229 + AT_rich Low_complexity Low_complexity 1 29 0 188 388 12 0 chr9 33855413 33855493 -84007134 - MIR SINE MIR -142 120 40 608 163 0 116 chr9 33855557 33855704 -84006923 + MLT2B2 LTR ERVL 254 383 -132 * 891 237 22 72 chr9 33855702 33855980 -84006647 + MLT1B LTR MaLR 123 386 -4 328 291 223 0 chr9 33857225 33857373 -84005254 + MER5A DNA MER1_type 9 189 0 18550 135 33 49 chr9 33858119 33861562 -84001065 + L1P LINE L1 1 3389 -2757 220 342 33 0 chr9 33862461 33862581 -84000046 - MIR SINE MIR -1 261 138 21 0 0 0 chr9 33862959 33862980 -83999647 + AT_rich Low_complexity Low_complexity 1 21 0 294 298 12 12 chr9 33863047 33863131 -83999496 + MER5A DNA MER1_type 36 119 -70 594 187 8 67 chr9 33863186 33863320 -83999307 + MER5B DNA MER1_type 1 126 -52 2271 124 0 3 chr9 33865126 33865433 -83997194 - AluSx SINE Alu -6 306 1 2448 223 211 53 chr9 33866436 33867897 -83994730 - HAL1 LINE L1 -137 2370 678 849 254 56 20 chr9 33868047 33868299 -83994328 + MIR SINE MIR 2 262 0 430 250 92 37 chr9 33868400 33868564 -83994063 - MIR SINE MIR -31 231 59 212 274 143 12 chr9 33869413 33869497 -83993130 + MER5A DNA MER1_type 95 189 0 1702 182 0 10 chr9 33871157 33871453 -83991174 + AluJo SINE Alu 1 293 -19 1168 184 265 84 chr9 33871473 33871958 -83990669 + MLT1E LTR MaLR 2 593 0 1662 224 67 9 chr9 33873037 33873627 -83989000 + MER82 DNA MER2_type 2 653 0 3116 132 2 4 chr9 33874304 33874760 -83987867 + Tigger1 DNA MER2_type 1963 2417 -1 443 206 10 41 chr9 33874761 33874858 -83987769 - MER63 DNA MER1_type -342 720 1 2137 111 4 0 chr9 33875383 33875662 -83986965 + AluSx SINE Alu 5 284 -28 2976 207 72 30 chr9 33875669 33876074 -83986553 + L1ME1 LINE L1 4323 4709 -1457 2579 93 25 0 chr9 33876074 33876429 -83986198 + THE1B LTR MaLR 1 364 0 2976 207 72 30 chr9 33876429 33877679 -83984948 + L1ME1 LINE L1 4709 6043 -123 408 222 18 78 chr9 33877650 33877734 -83984893 + L1MA10 LINE L1 6175 6246 -88 * 2121 129 10 0 chr9 33877734 33878028 -83984599 - AluSx SINE Alu -15 297 1 408 222 18 78 chr9 33878028 33878110 -83984517 + L1MA10 LINE L1 6246 6331 -3 15041 57 8 7 chr9 33878214 33880182 -83982445 + HERVL-A1 LTR ERVL 3684 5654 0 2566 102 34 8 chr9 33880182 33880586 -83982041 + MLT2A1 LTR ERVL 1 479 -36 272 36 121 0 chr9 33880586 33880669 -83981958 + (TA)n Simple_repeat Simple_repeat 2 94 0 2575 188 52 5 chr9 33880672 33881232 -83981395 - L1MCa LINE L1 -5817 609 24 633 240 66 0 chr9 33881265 33881461 -83981166 + LTR50 LTR ERVL 14 222 -573 301 292 146 0 chr9 33881657 33881787 -83980840 - MIR SINE MIR -12 250 102 204 277 0 0 chr9 33883345 33883392 -83979235 + MIR SINE MIR 168 214 -48 229 259 0 0 chr9 33885188 33885242 -83977385 + (TG)n Simple_repeat Simple_repeat 1 54 0 565 163 0 0 chr9 33885428 33885526 -83977101 - AluSp/q SINE Alu -10 303 206 348 243 28 28 chr9 33886698 33886805 -83975822 + MIR SINE MIR 94 200 -62 2191 98 0 14 chr9 33886882 33887177 -83975450 + AluY SINE Alu 1 291 -20 528 359 67 22 chr9 33889221 33889536 -83973091 - L2 LINE L2 -15 3257 2929 210 37 0 0 chr9 33890340 33890367 -83972260 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2050 100 0 0 chr9 33890371 33890631 -83971996 - AluSc SINE Alu -21 288 29 315 228 109 20 chr9 33890843 33890944 -83971683 - L2 LINE L2 -1 3271 3162 227 31 31 0 chr9 33890962 33890994 -83971633 + (TGG)n Simple_repeat Simple_repeat 1 33 0 246 156 47 0 chr9 33891630 33891694 -83970933 + (TA)n Simple_repeat Simple_repeat 1 67 0 258 286 61 0 chr9 33892961 33893059 -83969568 - MLT1G1 LTR MaLR 0 595 492 1644 197 56 0 chr9 33893095 33893470 -83969157 - L1ME2 LINE L1 -200 5964 5569 1310 196 25 0 chr9 33893478 33893763 -83968864 - L1ME1 LINE L1 -223 6441 6150 1115 151 120 224 chr9 33893881 33894489 -83968138 - MLT2B3 LTR ERVL -7 547 3 386 164 19 39 chr9 33894529 33894633 -83967994 - L1ME1 LINE L1 -1155 5489 5388 2973 209 50 71 chr9 33894643 33895206 -83967421 - L1ME1 LINE L1 -5601 941 405 6021 121 16 0 chr9 33895206 33896217 -83966410 - L1PA14 LINE L1 -1 6160 5144 2973 209 50 71 chr9 33896217 33896598 -83966029 - L1ME1 LINE L1 -6137 405 17 187 341 59 0 chr9 33897361 33897446 -83965181 + L3 LINE CR1 1308 1397 -180 186 294 0 0 chr9 33897454 33897505 -83965122 + L2 LINE L2 3017 3067 -205 1005 209 19 0 chr9 33897596 33897806 -83964821 + MER20 DNA MER1_type 2 215 -4 346 239 147 112 chr9 33898728 33898925 -83963702 - MIR SINE MIR -13 249 46 625 310 78 0 chr9 33900647 33900889 -83961738 + MIR SINE MIR 2 262 0 239 136 0 61 chr9 33901226 33901292 -83961335 - L1MC4 LINE L1 -1345 6697 6636 393 264 21 7 chr9 33901340 33901480 -83961147 + (TA)n Simple_repeat Simple_repeat 1 142 0 264 111 0 0 chr9 33901483 33901528 -83961099 + (TG)n Simple_repeat Simple_repeat 1 45 0 274 240 112 56 chr9 33902150 33902329 -83960298 - LTR67 LTR ERVL -9 548 360 250 273 0 0 chr9 33902391 33902446 -83960181 - MER63 DNA MER1_type 0 1061 1007 24 0 0 0 chr9 33902453 33902477 -83960150 + AT_rich Low_complexity Low_complexity 1 24 0 5410 159 16 7 chr9 33902485 33904462 -83958165 - L1MA4 LINE L1 -7 6475 4484 3394 183 16 5 chr9 33904458 33905099 -83957528 - L1MA4 LINE L1 -4676 652 5 * 13573 134 58 6 chr9 33905171 33907462 -83955165 + Tigger1 DNA MER2_type 2 2413 -5 398 206 10 41 chr9 33907467 33907564 -83955063 - MER63 DNA MER1_type -342 720 1 2254 93 4 0 chr9 33908089 33908407 -83954220 + AluSp SINE Alu 5 323 0 343 201 280 37 chr9 33908999 33909267 -83953360 - L1ME4a LINE L1 -7 6114 5782 413 63 38 13 chr9 33909282 33909361 -83953266 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 382 277 107 0 chr9 33909385 33909497 -83953130 + FLAM_A SINE Alu 2 125 -8 236 222 0 69 chr9 33909508 33909580 -83953047 - L1ME4a LINE L1 -433 5688 5622 536 314 90 22 chr9 33909647 33909870 -83952757 + MIR SINE MIR 3 240 -22 234 283 132 0 chr9 33910205 33910311 -83952316 + LTR16A1 LTR ERVL 338 457 0 867 196 27 38 chr9 33911162 33911346 -83951281 + MER5A DNA MER1_type 7 188 -1 248 291 81 108 chr9 33911376 33911599 -83951028 + L2 LINE L2 2956 3172 -100 2791 93 17 14 chr9 33911847 33912268 -83950359 - L1MA3 LINE L1 0 6305 5884 187 333 0 0 chr9 33912887 33912947 -83949680 + L2 LINE L2 3244 3303 -10 21 0 0 0 chr9 33915959 33915980 -83946647 + AT_rich Low_complexity Low_complexity 1 21 0 1908 226 75 33 chr9 33916324 33916630 -83945997 + MER90 LTR ERV1 1 341 -234 2209 136 42 20 chr9 33916630 33916984 -83945643 + THE1B LTR MaLR 1 362 -2 1908 226 75 33 chr9 33916984 33917220 -83945407 + MER90 LTR ERV1 341 566 -9 225 314 14 0 chr9 33917745 33917815 -83944812 + CT-rich Low_complexity Low_complexity 2 72 0 7641 133 14 13 chr9 33917882 33918034 -83944593 - L1MA2 LINE L1 -6 7717 7567 2086 4 0 0 chr9 33918034 33918259 -83944368 - AluYa5 SINE Alu -2 309 85 7641 133 14 13 chr9 33918259 33920468 -83942159 - L1MA2 LINE L1 -156 7567 5350 2236 107 7 0 chr9 33920468 33920767 -83941860 - AluY SINE Alu -10 301 1 7641 133 14 13 chr9 33920767 33920889 -83941738 - L1MA2 LINE L1 -2373 5350 5230 483 117 0 0 chr9 33920892 33920969 -83941658 - Alu SINE Alu 0 311 235 10945 119 56 3 chr9 33920969 33922741 -83939886 - L1MA2 LINE L1 -4594 2971 1105 314 205 116 27 chr9 33922737 33922849 -83939778 - L1MA2 LINE L1 -7430 135 14 * 37 52 0 0 chr9 33922992 33923050 -83939577 + AT_rich Low_complexity Low_complexity 1 58 0 1136 133 7 5 chr9 33923168 33923389 -83939238 - L1ME LINE L1 -655 5509 5290 22 0 0 0 chr9 33923444 33923466 -83939161 + AT_rich Low_complexity Low_complexity 1 22 0 1424 123 33 12 chr9 33923585 33923829 -83938798 - L1PB2 LINE L1 -8 6143 5895 225 245 128 11 chr9 33923957 33924051 -83938576 - MIR SINE MIR -67 195 91 3277 178 19 32 chr9 33924163 33924556 -83938071 + L1 LINE L1 3995 4374 -1772 225 0 0 0 chr9 33924556 33924581 -83938046 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 3277 178 19 32 chr9 33924581 33924979 -83937648 + L1 LINE L1 4374 4776 -1370 * 5458 38 81 0 chr9 33924974 33925663 -83936964 - L1P LINE L1 -1942 4204 3460 3554 132 28 46 chr9 33925767 33926031 -83936596 - LTR26 LTR ERV1 -2 601 334 2252 64 58 3 chr9 33926031 33926326 -83936301 + AluY SINE Alu 1 311 0 3554 132 28 46 chr9 33926326 33926673 -83935954 - LTR26 LTR ERV1 -269 334 1 445 193 57 0 chr9 33927954 33928042 -83934585 - LTR40b LTR ERVL 0 462 370 38 39 0 0 chr9 33928092 33928144 -83934483 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr9 33928247 33928278 -83934349 + AT_rich Low_complexity Low_complexity 1 31 0 1352 203 4 4 chr9 33928488 33928724 -83933903 + MER8 DNA MER2_type 1 236 -3 251 328 109 0 chr9 33928729 33928848 -83933779 - L2 LINE L2 -1 3271 3140 780 240 114 94 chr9 33928898 33929307 -83933320 - L1ME4a LINE L1 -63 6452 6018 1012 165 21 5 chr9 33929307 33929501 -83933126 - L1PA16 LINE L1 -7 6159 5963 780 240 114 94 chr9 33929501 33929871 -83932756 - L1ME4a LINE L1 -497 6018 5657 226 321 42 103 chr9 33929962 33930127 -83932500 - MIR SINE MIR -93 169 15 1379 227 66 5 chr9 33930431 33930850 -83931777 - L1MEc LINE L1 -3440 3100 2677 230 139 0 0 chr9 33930879 33930915 -83931712 - MLT1A1 LTR MaLR 0 365 330 1131 208 35 76 chr9 33930989 33931330 -83931297 - MLT1A1 LTR MaLR -38 327 1 839 198 96 20 chr9 33931331 33932787 -83929840 - L1MEc LINE L1 -3917 2623 990 648 276 51 32 chr9 33932779 33932996 -83929631 + L1MDa LINE L1 240 460 -6080 * 1685 256 116 13 chr9 33933012 33934034 -83928593 - L1MEc LINE L1 -3363 2852 1745 23 33 0 0 chr9 33934034 33934064 -83928563 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr9 33934105 33934137 -83928490 + AT_rich Low_complexity Low_complexity 1 32 0 3422 182 3 5 chr9 33934222 33934859 -83927768 - L1MA7 LINE L1 0 6291 5656 307 146 0 0 chr9 33934875 33934923 -83927704 - L1MA7 LINE L1 -739 5573 5526 1403 236 149 22 chr9 33934937 33935674 -83926953 - L1MCa LINE L1 -4173 2253 899 369 0 0 0 chr9 33936212 33936253 -83926374 + (CA)n Simple_repeat Simple_repeat 2 42 0 199 118 29 0 chr9 33936419 33936453 -83926174 - L2 LINE L2 0 3272 3238 225 292 131 31 chr9 33938274 33938404 -83924223 - MIR SINE MIR -71 191 49 6816 118 58 81 chr9 33938685 33940015 -83922612 - HSMAR2 DNA Mariner -2 1300 2 381 22 0 0 chr9 33940015 33940061 -83922566 + (TG)n Simple_repeat Simple_repeat 2 47 0 648 264 61 7 chr9 33940980 33941243 -83921384 + L1ME4a LINE L1 5478 5757 -364 14805 194 21 10 chr9 33941344 33947483 -83915144 + L1PB1 LINE L1 6 6516 -351 1032 149 0 0 chr9 33947483 33947701 -83914926 + (TA)n Simple_repeat Simple_repeat 1 218 0 14805 194 21 10 chr9 33947701 33948050 -83914577 + L1PB1 LINE L1 6516 6859 -8 311 226 64 59 chr9 33948058 33948262 -83914365 + L1ME4a LINE L1 5909 6113 -8 21 0 0 0 chr9 33948301 33948322 -83914305 + AT_rich Low_complexity Low_complexity 1 21 0 274 282 70 0 chr9 33948750 33948821 -83913806 - MER91C DNA MER1_type -64 76 1 499 243 37 0 chr9 33949131 33949238 -83913389 - MIR SINE MIR -104 158 48 22 56 0 0 chr9 33951582 33951618 -83911009 + AT_rich Low_complexity Low_complexity 1 36 0 397 359 164 16 chr9 33951672 33952056 -83910571 + L2 LINE L2 2832 3272 0 5125 104 16 30 chr9 33952246 33953066 -83909561 + L1PA16 LINE L1 5356 6163 -3 580 283 30 63 chr9 33953121 33953358 -83909269 - MIR SINE MIR -20 242 14 386 233 61 104 chr9 33954272 33954435 -83908192 + MIR3 SINE MIR 45 200 -8 426 20 0 0 chr9 33955210 33955261 -83907366 + (GA)n Simple_repeat Simple_repeat 1 51 0 1594 219 107 15 chr9 33955507 33955945 -83906682 + MLT2B1 LTR ERVL 1 488 -32 317 82 20 0 chr9 33955945 33955994 -83906633 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 1594 219 107 15 chr9 33955994 33956031 -83906596 + MLT2B1 LTR ERVL 488 520 0 662 183 0 0 chr9 33956031 33956146 -83906481 + MLT1A2-int LTR MaLR 1 115 -1256 * 2179 194 52 9 chr9 33956137 33956601 -83906026 + MLT1A2-int LTR MaLR 260 743 -628 255 275 0 0 chr9 33956716 33956785 -83905842 + MLT1A2-int LTR MaLR 679 747 -988 38 22 0 0 chr9 33956843 33956888 -83905739 + AT_rich Low_complexity Low_complexity 1 45 0 1724 163 23 20 chr9 33956914 33957215 -83905412 + MLT1A2-int LTR MaLR 1353 1654 -81 1148 246 69 17 chr9 33957215 33957503 -83905124 + MLT1A2 LTR MaLR 68 370 -4 251 226 156 54 chr9 33958068 33958201 -83904426 + MIR3 SINE MIR 10 153 -66 211 359 72 24 chr9 33958478 33958645 -83903982 + L2 LINE L2 2916 3090 -182 327 261 189 9 chr9 33958794 33958905 -83903722 + MER5A DNA MER1_type 59 189 0 373 345 122 0 chr9 33959154 33959302 -83903325 - MER91B DNA MER1_type -11 179 14 478 297 90 44 chr9 33959520 33959887 -83902740 - MLT1H1 LTR MaLR -107 448 65 219 365 56 24 chr9 33960225 33960351 -83902276 + MIR3 SINE MIR 2 131 -77 2449 35 0 3 chr9 33960705 33961007 -83901620 - AluY SINE Alu 0 301 1 25 0 0 0 chr9 33961476 33961501 -83901126 + AT_rich Low_complexity Low_complexity 1 25 0 1714 209 106 51 chr9 33961614 33962106 -83900521 + MLT2B1 LTR ERVL 1 519 -1 263 191 221 0 chr9 33963095 33963163 -83899464 + MIR SINE MIR 180 262 0 3667 114 88 25 chr9 33963240 33963707 -83898920 - Tigger3b DNA MER2_type -1797 1231 708 2350 62 27 0 chr9 33963707 33963999 -83898628 - AluSc SINE Alu -9 300 1 3667 114 88 25 chr9 33963999 33964205 -83898422 - Tigger3b DNA MER2_type -2320 708 516 2811 143 15 13 chr9 33964411 33964872 -83897755 - Tigger3b DNA MER2_type -768 463 2 27 0 0 0 chr9 33965815 33965842 -83896785 + AT_rich Low_complexity Low_complexity 1 27 0 308 378 111 0 chr9 33966026 33966161 -83896466 + MLT1K LTR MaLR 2 151 -437 1268 86 19 0 chr9 33966163 33966325 -83896302 - AluSx SINE Alu -147 165 1 536 295 68 14 chr9 33966397 33966604 -83896023 + MLT1K LTR MaLR 369 586 -2 370 289 5 123 chr9 33966882 33967014 -83895613 - MER5A DNA MER1_type -1 188 87 1812 122 0 12 chr9 33967014 33967269 -83895358 - AluSg SINE Alu -55 255 4 370 289 5 123 chr9 33967269 33967340 -83895287 - MER5A DNA MER1_type -102 87 9 2074 171 63 145 chr9 33968225 33969017 -83893610 + LTR8A LTR ERV1 1 727 0 399 310 16 8 chr9 33970242 33970371 -83892256 + MER5A DNA MER1_type 38 167 -22 25 0 0 0 chr9 33970421 33970446 -83892181 + AT_rich Low_complexity Low_complexity 1 25 0 544 255 138 50 chr9 33970756 33971114 -83891513 - MLT1F1 LTR MaLR 0 593 179 396 138 0 0 chr9 33971114 33971179 -83891448 + (GA)n Simple_repeat Simple_repeat 1 65 0 807 204 47 43 chr9 33971179 33971390 -83891237 - MLT1F1 LTR MaLR -355 212 1 216 235 0 0 chr9 33971405 33971456 -83891171 - MER91B DNA MER1_type -136 54 4 665 333 120 28 chr9 33971654 33972421 -83890206 + L2 LINE L2 2482 3313 0 924 206 131 14 chr9 33972514 33972728 -83889899 - MER8 DNA MER2_type 0 239 1 206 288 55 27 chr9 33973323 33973396 -83889231 + L2 LINE L2 3198 3272 0 193 350 80 10 chr9 33974236 33974336 -83888291 - L2 LINE L2 -43 3229 3123 1691 260 61 38 chr9 33974455 33975029 -83887598 - MLT1E LTR MaLR -2 591 5 192 339 50 50 chr9 33975217 33975250 -83887377 - L2 LINE L2 -464 2850 2818 1567 115 23 109 chr9 33975250 33975598 -83887029 + L1MA10 LINE L1 6015 6332 -2 192 339 50 50 chr9 33975598 33975744 -83886883 - L2 LINE L2 -495 2819 2671 233 212 12 82 chr9 33976186 33976271 -83886356 + MIR3 SINE MIR 118 196 -12 2512 74 0 0 chr9 33976307 33976616 -83886011 + AluY SINE Alu 1 309 -2 31 0 0 0 chr9 33977377 33977408 -83885219 + AT_rich Low_complexity Low_complexity 1 31 0 3464 222 22 53 chr9 33977496 33977986 -83884641 - L1ME1 LINE L1 -9 6157 5653 234 0 0 0 chr9 33977986 33978012 -83884615 + (TG)n Simple_repeat Simple_repeat 1 26 0 3464 222 22 53 chr9 33978012 33978686 -83883941 - L1ME1 LINE L1 -513 5653 4999 262 135 0 0 chr9 33978686 33978723 -83883904 + U2 snRNA snRNA 1 37 -151 3464 222 22 53 chr9 33978723 33978833 -83883794 - L1ME1 LINE L1 -1167 4999 4887 473 236 55 6 chr9 33978824 33978989 -83883638 - L1M4 LINE L1 -893 5253 5081 * 201 367 114 30 chr9 33979797 33979990 -83882637 + L2 LINE L2 1613 1788 -1526 2480 56 0 10 chr9 33979990 33980295 -83882332 - AluY SINE Alu -9 302 1 201 367 114 30 chr9 33980295 33980532 -83882095 + L2 LINE L2 1788 2079 -1235 2454 43 3 55 chr9 33982523 33982849 -83879778 + AluY SINE Alu 1 309 -2 213 337 43 11 chr9 33982849 33982941 -83879686 - MIR SINE MIR -69 139 45 320 323 42 48 chr9 33983139 33983470 -83879157 - L1M4 LINE L1 -802 5344 5016 611 176 0 0 chr9 33983515 33983617 -83879010 + AluJ/FLAM SINE Alu 1 102 -210 279 0 0 0 chr9 33984840 33984871 -83877756 + (CA)n Simple_repeat Simple_repeat 1 31 0 434 272 64 35 chr9 33985569 33985742 -83876885 - MIR3 SINE MIR -7 201 24 21 0 0 0 chr9 33986218 33986239 -83876388 + AT_rich Low_complexity Low_complexity 1 21 0 404 342 56 60 chr9 33986747 33987013 -83875614 - L2 LINE L2 -58 3214 2950 38 39 0 0 chr9 33987227 33987279 -83875348 + AT_rich Low_complexity Low_complexity 1 52 0 415 332 97 8 chr9 33989362 33989609 -83873018 + L2 LINE L2 3006 3274 -39 3203 174 49 22 chr9 33990007 33990277 -83872350 - L1MD2 LINE L1 0 6359 6098 2180 103 143 11 chr9 33990277 33990655 -83871972 + MSTA LTR MaLR 1 428 0 3203 174 49 22 chr9 33990655 33991072 -83871555 - L1MD2 LINE L1 -261 6098 5653 2373 129 86 14 chr9 33991237 33991656 -83870971 - L1PA16 LINE L1 0 6166 5718 1654 201 39 0 chr9 33991656 33992040 -83870587 - L1M4 LINE L1 -1384 4762 4364 1901 203 101 53 chr9 33992053 33992431 -83870196 + L1MC4 LINE L1 7407 7826 -216 1608 184 10 19 chr9 33992431 33992741 -83869886 - AluJo SINE Alu -3 309 3 1901 203 101 53 chr9 33992741 33992968 -83869659 + L1MC4 LINE L1 7826 8041 -1 231 151 38 38 chr9 33992987 33993040 -83869587 + L2 LINE L2 3245 3297 -16 654 322 59 22 chr9 33993484 33993928 -83868699 - L1ME4a LINE L1 -193 5928 5469 303 315 22 11 chr9 33993986 33994075 -83868552 + MER5B DNA MER1_type 1 90 -88 1504 143 147 16 chr9 33994447 33994761 -83867866 + L1PA15 LINE L1 5811 6165 0 3438 160 42 30 chr9 33994871 33995583 -83867044 - L1MD1 LINE L1 -6 6630 5910 1402 111 0 5 chr9 33995583 33995772 -83866855 + THE1B LTR MaLR 2 189 -175 428 151 0 14 chr9 33995777 33995850 -83866777 + THE1B LTR MaLR 304 375 0 4822 226 85 71 chr9 33995850 33997358 -83865269 - L1MD1 LINE L1 -743 5797 4312 2053 123 17 0 chr9 33997358 33997651 -83864976 - AluSx SINE Alu -12 300 3 4822 226 85 71 chr9 33997651 33997891 -83864736 - L1MD1 LINE L1 -2228 4312 4077 644 227 0 16 chr9 33997891 33998019 -83864608 + FLAM_A SINE Alu 1 126 -7 4822 226 85 71 chr9 33998019 33998387 -83864240 - L1MD1 LINE L1 -2463 4077 3786 2860 127 47 2 chr9 33998387 33998851 -83863776 - MER31A LTR ERV1 0 485 1 4822 226 85 71 chr9 33998851 33999161 -83863466 - L1MD1 LINE L1 -2754 3786 3482 1721 257 32 28 chr9 33999154 33999624 -83863003 - L1MD1 LINE L1 -5904 636 165 * 5688 177 13 21 chr9 33999603 34000167 -83862460 - L1MA4A LINE L1 -301 6396 5829 1555 158 75 7 chr9 34000167 34000446 -83862181 - AluJb SINE Alu -14 298 1 5688 177 13 21 chr9 34000446 34001761 -83860866 - L1MA4A LINE L1 -868 5829 4529 42222 38 24 1 chr9 34002361 34008373 -83854254 + L1PA3 LINE L1 2 6151 -4 3159 23 0 18 chr9 34008383 34008769 -83853858 + L1PA4 LINE L1 5770 6148 -7 2149 109 3 10 chr9 34009105 34009417 -83853210 + AluSq SINE Alu 1 310 -3 1212 174 81 4 chr9 34009674 34009921 -83852706 - ORSL DNA AcHobo -9 266 1 336 293 41 24 chr9 34009928 34010051 -83852576 + L2 LINE L2 3188 3312 -1 751 261 28 51 chr9 34010440 34010693 -83851934 - MIR SINE MIR -13 249 3 1933 159 0 14 chr9 34010917 34011212 -83851415 + AluSx SINE Alu 1 291 -21 3138 84 18 14 chr9 34011702 34012144 -83850483 + MLT2A1 LTR ERVL 1 444 0 213 154 0 0 chr9 34012214 34012253 -83850374 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 3542 166 6 3 chr9 34012321 34012954 -83849673 - L1PA16 LINE L1 0 6166 5532 253 252 9 139 chr9 34015041 34015156 -83847471 - MIR3 SINE MIR -13 195 96 761 307 29 0 chr9 34015163 34015404 -83847223 - MER90 LTR ERV1 -4 610 363 43093 47 1 1 chr9 34015441 34021592 -83841035 + L1PA4 LINE L1 1 6155 0 1369 211 29 0 chr9 34021798 34022149 -83840478 - L1MA4 LINE L1 -5 6295 5935 732 145 109 7 chr9 34022330 34022468 -83840159 - Tigger1 DNA MER2_type -1464 954 803 857 285 136 35 chr9 34022625 34023463 -83839164 + HAL1 LINE L1 1585 2507 0 274 250 22 43 chr9 34023555 34023647 -83838980 + L1MDa LINE L1 3 92 -6448 280 182 55 0 chr9 34023758 34023875 -83838752 + L1M4 LINE L1 5188 5311 -848 2081 103 164 14 chr9 34023875 34024235 -83838392 - MSTA LTR MaLR 0 428 15 314 141 104 178 chr9 34024285 34024448 -83838179 + L1MD3 LINE L1 7832 7982 -13 259 367 69 11 chr9 34024524 34024712 -83837915 + MIR SINE MIR 57 255 -7 1762 136 63 41 chr9 34025551 34025918 -83836709 - THE1C LTR MaLR 0 375 1 237 228 88 44 chr9 34026035 34026149 -83836478 + L1MDa LINE L1 478 596 -5934 391 322 26 41 chr9 34026222 34026489 -83836138 + L1MDa LINE L1 1059 1321 -5209 2021 126 4 0 chr9 34026489 34026788 -83835839 + AluSg SINE Alu 1 300 0 295 279 105 12 chr9 34027024 34027196 -83835431 + L1ME1 LINE L1 5774 5961 -205 23 0 0 0 chr9 34027345 34027368 -83835259 + AT_rich Low_complexity Low_complexity 1 23 0 487 220 193 7 chr9 34030733 34030883 -83831744 - MER5B DNA MER1_type 0 178 1 2004 141 3 7 chr9 34031628 34031934 -83830693 - AluSx SINE Alu -7 305 1 205 277 48 48 chr9 34033929 34034012 -83828615 + MIR SINE MIR 158 240 -22 11763 193 29 14 chr9 34034062 34034722 -83827905 + L1MA4A LINE L1 2489 3137 -3166 2240 86 3 26 chr9 34034722 34035024 -83827603 + AluSc SINE Alu 1 295 -14 11763 193 29 14 chr9 34035024 34038037 -83824590 + L1MA4A LINE L1 3137 6280 -23 1821 236 42 11 chr9 34038053 34038524 -83824103 - Charlie1a DNA MER1_type -968 487 2 467 165 46 9 chr9 34038755 34038864 -83823763 + LTR50 LTR ERVL 556 668 -127 1739 202 19 11 chr9 34038866 34039228 -83823399 - MER89 LTR ERV1 0 559 195 412 135 54 0 chr9 34039210 34039284 -83823343 - MER89 LTR ERV1 -481 78 1 * 355 176 40 0 chr9 34039287 34039361 -83823266 + LTR50 LTR ERVL 711 787 -8 326 278 56 0 chr9 34039533 34039641 -83822986 + MER81 DNA DNA 1 114 0 1220 200 54 70 chr9 34041126 34041662 -83820965 - MER67C LTR ERV1 0 514 2 841 229 64 24 chr9 34041745 34041994 -83820633 - MER67C-int LTR ERV1 -100 4836 4578 333 241 0 35 chr9 34042129 34042216 -83820411 - MER67C-int LTR ERV1 -371 4565 4482 260 191 48 0 chr9 34042337 34042400 -83820227 - MER67C-int LTR ERV1 -735 4201 4136 19222 38 2 2 chr9 34042409 34045550 -83817077 - L1PA5 LINE L1 -4 6150 3006 512 215 9 0 chr9 34045554 34045661 -83816966 + MER31-int LTR ERV1 4006 4113 -823 2419 114 62 24 chr9 34045830 34045917 -83816710 + Tigger3(Golem) DNA MER2_type 2245 2327 -701 1919 143 7 29 chr9 34045917 34046224 -83816403 - AluJo SINE Alu -12 300 1 2419 114 62 24 chr9 34046224 34046601 -83816026 + Tigger3(Golem) DNA MER2_type 2327 2727 -301 964 213 19 5 chr9 34049226 34049437 -83813190 - MER20 DNA MER1_type -4 215 2 186 294 0 0 chr9 34049528 34049579 -83813048 - L2 LINE L2 -205 3067 3017 187 341 59 0 chr9 34049587 34049672 -83812955 - L3 LINE CR1 -180 1397 1308 1322 198 42 66 chr9 34050433 34050811 -83811816 + L1M4 LINE L1 17 385 -6157 1946 126 6 9 chr9 34050814 34051250 -83811377 + L1P4 LINE L1 5144 5579 -582 512 163 41 0 chr9 34051375 34051473 -83811154 - AluSx SINE Alu -6 303 202 * 754 108 0 18 chr9 34051471 34051582 -83811045 - AluSx SINE Alu -201 111 3 310 323 159 20 chr9 34051639 34051840 -83810787 + MIR SINE MIR 34 262 0 197 358 74 0 chr9 34051842 34051937 -83810690 - MIR3 SINE MIR -100 108 7 1183 158 67 16 chr9 34052435 34052688 -83809939 + L1MD3 LINE L1 7710 7975 -20 182 271 0 0 chr9 34054397 34054445 -83808182 + MER5A DNA MER1_type 2 49 -140 386 233 22 0 chr9 34054544 34054634 -83807993 - L2 LINE L2 -1 3312 3221 1008 267 8 19 chr9 34055955 34056213 -83806414 - MIR SINE MIR -3 259 5 205 289 100 0 chr9 34056321 34056411 -83806216 - MIR SINE MIR -48 214 116 2387 90 0 0 chr9 34056811 34057111 -83805516 + AluSg SINE Alu 1 300 -10 744 215 113 20 chr9 34057222 34057417 -83805210 + MER58C DNA MER1_type 3 215 0 401 311 136 31 chr9 34057771 34058329 -83804298 + L2 LINE L2 2545 3163 -109 2290 74 3 17 chr9 34059039 34059336 -83803291 - AluY SINE Alu -18 293 1 190 387 139 6 chr9 34059923 34060096 -83802531 + L2 LINE L2 3076 3271 -1 336 240 0 0 chr9 34060111 34060186 -83802441 + MIR SINE MIR 61 135 -73 350 187 27 0 chr9 34060799 34060874 -83801753 - L1ME2 LINE L1 -21 6143 6067 1766 197 99 111 chr9 34060888 34061801 -83800826 - L1ME2 LINE L1 -537 5627 4705 638 136 0 18 chr9 34061801 34061911 -83800716 - FRAM SINE Alu -1 175 68 1766 197 99 111 chr9 34061911 34062117 -83800510 - L1ME2 LINE L1 -1459 4705 4422 1017 122 0 112 chr9 34062117 34062314 -83800313 - FAM SINE Alu 0 175 1 1766 197 99 111 chr9 34062314 34062380 -83800247 - L1ME2 LINE L1 -1742 4422 4357 1396 192 0 28 chr9 34062438 34062729 -83799898 + SVA Other Other 828 1110 -276 3660 218 88 97 chr9 34063569 34064477 -83798150 - L1ME LINE L1 -537 5561 4646 632 138 0 18 chr9 34064477 34064586 -83798041 - FRAM SINE Alu -2 174 68 3660 218 88 97 chr9 34064586 34064792 -83797835 - L1ME LINE L1 -1452 4646 4440 1017 122 0 112 chr9 34064792 34064989 -83797638 - FAM SINE Alu 0 175 1 3660 218 88 97 chr9 34064989 34065093 -83797534 - L1ME LINE L1 -1658 4440 4337 2227 108 0 0 chr9 34065093 34065398 -83797229 + AluSx SINE Alu 1 305 -7 3660 218 88 97 chr9 34065398 34065579 -83797048 - L1ME LINE L1 -1761 4337 4156 1573 142 105 8 chr9 34065579 34065846 -83796781 - AluJb SINE Alu -19 293 1 3660 218 88 97 chr9 34065846 34066578 -83796049 - L1ME LINE L1 -1942 4156 3340 1055 207 108 30 chr9 34066578 34066861 -83795766 + MER93a LTR ERV1 1 367 -35 2137 121 6 13 chr9 34066861 34067175 -83795452 - AluJb SINE Alu 0 312 1 1055 207 108 30 chr9 34067175 34067214 -83795413 + MER93a LTR ERV1 367 402 0 231 243 27 0 chr9 34067216 34067290 -83795337 - L1 LINE L1 -2739 3341 3266 266 164 73 0 chr9 34067306 34067361 -83795266 - L1 LINE L1 -2896 3250 3192 553 269 89 34 chr9 34067569 34067896 -83794731 - L1ME LINE L1 -4322 1939 1595 374 234 50 44 chr9 34067890 34068154 -83794473 - L1MCc LINE L1 -4888 674 497 * 257 244 61 0 chr9 34068175 34068257 -83794370 - L1MCc LINE L1 -5444 626 540 561 308 66 49 chr9 34068441 34068908 -83793719 - L1MCc LINE L1 -5539 531 57 563 177 7 57 chr9 34069192 34069333 -83793294 + L1PA5 LINE L1 6017 6150 -4 474 277 204 15 chr9 34069376 34069650 -83792977 - L2 LINE L2 0 3313 2988 2054 123 10 27 chr9 34069668 34069969 -83792658 + AluSx SINE Alu 1 296 -16 207 0 0 0 chr9 34070137 34070160 -83792467 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1414 74 268 17 chr9 34070162 34070393 -83792234 - AluY SINE Alu -22 289 1 536 263 253 18 chr9 34070395 34070680 -83791947 - L2 LINE L2 -566 2748 2397 283 237 193 30 chr9 34070688 34070823 -83791804 - L2 LINE L2 -106 3207 3051 284 273 91 0 chr9 34070825 34070913 -83791714 + MLT1H LTR MaLR 250 345 -204 233 346 152 14 chr9 34071104 34071321 -83791306 - L2 LINE L2 -1968 1346 1100 398 250 0 0 chr9 34071324 34071420 -83791207 + MER58 DNA MER1_type 6 101 -114 727 164 0 55 chr9 34071421 34071567 -83791060 + FLAM_C SINE Alu 1 138 -5 276 285 132 14 chr9 34071631 34071775 -83790852 - L2 LINE L2 -2217 1097 937 268 346 51 21 chr9 34072014 34072248 -83790379 + L2 LINE L2 2069 2309 -1005 21 0 0 0 chr9 34072357 34072378 -83790249 + AT_rich Low_complexity Low_complexity 1 21 0 578 220 45 0 chr9 34072379 34072511 -83790116 - MER3 DNA MER1_type -11 198 61 213 343 34 68 chr9 34072542 34072807 -83789820 + L2 LINE L2 2361 2616 -698 885 161 58 0 chr9 34072816 34072971 -83789656 - FRAM SINE Alu -2 174 11 186 333 99 0 chr9 34073110 34073191 -83789436 + L2 LINE L2 3184 3272 0 341 303 149 79 chr9 34075598 34075855 -83786772 - L2 LINE L2 -348 2966 2728 2137 104 7 17 chr9 34075855 34076154 -83786473 + AluSx SINE Alu 1 296 -16 341 303 149 79 chr9 34076154 34076414 -83786213 - L2 LINE L2 -586 2728 2413 277 216 32 112 chr9 34076929 34076985 -83785642 + L2 LINE L2 3199 3241 -72 2187 109 6 13 chr9 34076985 34077296 -83785331 + AluSg SINE Alu 2 310 0 277 216 32 112 chr9 34077296 34077364 -83785263 + L2 LINE L2 3241 3313 0 24 32 0 0 chr9 34078082 34078113 -83784514 + AT_rich Low_complexity Low_complexity 1 31 0 200 184 0 0 chr9 34078821 34078859 -83783768 + CT-rich Low_complexity Low_complexity 2 39 0 588 246 164 14 chr9 34081324 34081531 -83781096 + MIR SINE MIR 7 244 -18 241 211 70 0 chr9 34081813 34081870 -83780757 - L1MB8 LINE L1 -20 6158 6098 300 191 60 36 chr9 34081928 34082012 -83780615 + MIR SINE MIR 177 262 0 2158 115 26 0 chr9 34082318 34082622 -83780005 + AluSq SINE Alu 1 312 -1 279 309 18 95 chr9 34083190 34083358 -83779269 + MIR3 SINE MIR 2 156 -52 21 0 0 0 chr9 34083656 34083677 -83778950 + AT_rich Low_complexity Low_complexity 1 21 0 1030 141 7 0 chr9 34083728 34083902 -83778725 + AluJb SINE Alu 134 308 0 789 134 22 30 chr9 34083925 34084059 -83778568 + FLAM_C SINE Alu 1 133 0 2181 176 82 37 chr9 34084164 34084671 -83777956 + L1MB8 LINE L1 5615 6149 -29 2266 63 0 60 chr9 34084671 34084988 -83777639 - AluY SINE Alu -13 298 1 2181 176 82 37 chr9 34084988 34085020 -83777607 + L1MB8 LINE L1 6149 6178 0 854 146 0 0 chr9 34086087 34086210 -83776417 + FLAM_C SINE Alu 1 123 -20 3866 122 35 61 chr9 34086217 34086350 -83776277 - L1MA7 LINE L1 -18 6273 6138 2007 155 3 3 chr9 34086350 34086660 -83775967 + AluJb SINE Alu 1 310 -2 3866 122 35 61 chr9 34086660 34087231 -83775396 - L1MA7 LINE L1 -153 6138 5587 8581 85 6 3 chr9 34087675 34088820 -83773807 - Tigger1 DNA MER2_type -445 1973 826 1972 180 12 0 chr9 34088819 34089163 -83773464 - Tigger1 DNA MER2_type -2070 348 1 * 2035 107 11 11 chr9 34089206 34089510 -83773117 + AluSx SINE Alu 3 306 0 869 286 143 26 chr9 34090319 34090704 -83771923 - MLT1J2 LTR MaLR 0 450 21 2260 95 16 0 chr9 34092146 34092451 -83770176 - AluSp SINE Alu -3 310 1 1047 255 66 7 chr9 34092747 34093033 -83769594 + L1MEc LINE L1 39 341 -6055 316 284 46 0 chr9 34093067 34093176 -83769451 + L1MEc LINE L1 397 510 -5886 * 547 235 35 6 chr9 34093162 34093332 -83769295 + L1MEc LINE L1 809 983 -5413 7086 77 9 7 chr9 34093340 34094316 -83768311 + L1PA10 LINE L1 5191 6168 0 5285 230 56 36 chr9 34094323 34095412 -83767215 + L1MB1 LINE L1 2955 4089 -2057 724 191 0 52 chr9 34095412 34095548 -83767079 - FLAM_A SINE Alu 0 133 5 5285 230 56 36 chr9 34095548 34096087 -83766540 + L1MB1 LINE L1 4089 4616 -1530 1282 256 50 99 chr9 34096088 34097455 -83765172 + L1MB1 LINE L1 5264 6002 -166 3669 201 24 45 chr9 34096166 34096308 -83766319 + L1ME1 LINE L1 5318 5461 -705 2141 111 3 7 chr9 34096308 34096596 -83766031 - AluSx SINE Alu -25 287 1 3669 201 24 45 chr9 34096596 34096675 -83765952 + L1ME1 LINE L1 5461 5540 -626 2424 89 0 0 chr9 34096675 34096979 -83765648 - AluSx SINE Alu -8 304 1 3669 201 24 45 chr9 34096979 34097623 -83765004 + L1ME1 LINE L1 5540 6166 0 276 324 9 9 chr9 34098109 34098214 -83764413 - L2 LINE L2 0 3272 3168 312 302 22 95 chr9 34098250 34098472 -83764155 - LTR67 LTR ERVL 0 557 352 286 337 22 0 chr9 34098672 34098761 -83763866 - L2 LINE L2 -277 2995 2905 1209 297 41 18 chr9 34098802 34099294 -83763333 - L2 LINE L2 -518 2796 2294 2394 73 7 0 chr9 34099500 34099801 -83762826 + AluY SINE Alu 1 303 -8 344 264 176 6 chr9 34099905 34100064 -83762563 + MIR SINE MIR 67 252 -10 315 271 85 39 chr9 34100871 34101000 -83761627 - MIR SINE MIR -108 154 20 314 288 74 83 chr9 34101001 34101338 -83761289 + L1M2 LINE L1 965 1298 -5551 2259 69 21 3 chr9 34103672 34103961 -83758666 - AluY SINE Alu -17 294 1 264 365 155 13 chr9 34104462 34104772 -83757855 + L3 LINE CR1 1023 1376 -201 221 315 37 46 chr9 34104893 34105001 -83757626 + MIR SINE MIR 5 111 -151 370 214 55 134 chr9 34105007 34105208 -83757419 + MLT1J1 LTR MaLR 254 438 -8 824 153 23 8 chr9 34105604 34105735 -83756892 + FLAM_C SINE Alu 1 133 0 391 207 0 37 chr9 34106746 34106828 -83755799 + MLT1J1 LTR MaLR 106 184 -262 353 279 12 0 chr9 34106905 34106991 -83755636 + MLT1I LTR MaLR 291 377 -32 2239 100 10 19 chr9 34107320 34107631 -83754996 - AluSx SINE Alu -4 308 1 1947 131 3 17 chr9 34107636 34107933 -83754694 - AluSx SINE Alu -10 302 10 2218 101 16 0 chr9 34107944 34108250 -83754377 - AluSq SINE Alu -2 311 1 2501 65 0 0 chr9 34108591 34108884 -83753743 - AluY SINE Alu -18 293 1 201 39 0 0 chr9 34109217 34109243 -83753384 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 206 244 0 0 chr9 34109316 34109361 -83753266 + A-rich Low_complexity Low_complexity 1 45 0 1312 242 208 28 chr9 34109499 34110406 -83752221 + L2 LINE L2 2233 3310 -3 2015 145 0 10 chr9 34111798 34112101 -83750526 - AluSx SINE Alu -12 300 1 210 370 49 29 chr9 34112144 34112390 -83750237 + L2 LINE L2 2417 2667 -647 262 133 22 0 chr9 34113021 34113066 -83749561 - L1MC4a LINE L1 0 7808 7763 4596 200 74 73 chr9 34113070 34113798 -83748829 - L1MC4 LINE L1 -137 7905 7174 1448 157 75 37 chr9 34113798 34114092 -83748535 - AluJo SINE Alu -5 307 3 4596 200 74 73 chr9 34114092 34114797 -83747830 - L1MC4 LINE L1 -868 7174 6471 626 197 8 8 chr9 34114797 34114914 -83747713 + Tigger1 DNA MER2_type 1 117 -2301 345 158 66 40 chr9 34115339 34115415 -83747212 + MER116 DNA Mariner 3 80 0 230 200 44 89 chr9 34115424 34115481 -83747146 - L1ME LINE L1 -361 5760 5707 2211 116 3 0 chr9 34115481 34115782 -83746845 + AluSx SINE Alu 1 302 -10 230 200 44 89 chr9 34115782 34115814 -83746813 - L1ME LINE L1 -414 5707 5675 2148 123 0 3 chr9 34116160 34116462 -83746165 + AluSq SINE Alu 1 301 -12 2157 161 10 36 chr9 34117741 34117820 -83744807 + Tigger1 DNA MER2_type 103 182 -2236 1998 98 44 0 chr9 34117820 34118095 -83744532 - AluSx SINE Alu -25 287 1 2157 161 10 36 chr9 34118095 34118405 -83744222 + Tigger1 DNA MER2_type 182 482 -1936 950 122 0 0 chr9 34118405 34118536 -83744091 + AluSg/x SINE Alu 166 296 -14 4853 112 13 148 chr9 34118536 34119219 -83743408 + Tigger1 DNA MER2_type 1499 2272 -146 2367 90 0 0 chr9 34119219 34119519 -83743108 - AluSg SINE Alu -10 300 1 4853 112 13 148 chr9 34119519 34119682 -83742945 + Tigger1 DNA MER2_type 2272 2455 37 2458 78 0 3 chr9 34119682 34119988 -83742639 - AluSc SINE Alu -4 305 1 1512 220 7 14 chr9 34119990 34120286 -83742341 - AluJo SINE Alu -18 294 1 4853 112 13 148 chr9 34120286 34120498 -83742129 + Tigger1 DNA MER2_type 2179 2418 0 511 290 62 0 chr9 34122453 34122615 -83740012 + MIR SINE MIR 71 242 -20 192 344 67 0 chr9 34123972 34124062 -83738565 - MER5B DNA MER1_type -22 156 61 * 202 204 161 43 chr9 34124017 34124110 -83738517 + MIR SINE MIR 52 155 -107 275 223 96 21 chr9 34124186 34124280 -83738347 + L1MC4a LINE L1 5683 5783 -2025 1293 154 31 7 chr9 34124283 34124686 -83737941 - LTR54 LTR ERV1 -1 509 9 418 275 130 44 chr9 34124698 34125036 -83737591 + L1MC4a LINE L1 5790 6156 -1652 1335 199 122 53 chr9 34125036 34125413 -83737214 + MER57A LTR ERV1 1 403 0 1284 130 61 35 chr9 34125540 34125770 -83736857 - Tigger2a DNA MER2_type -7 437 202 558 144 18 36 chr9 34125762 34125873 -83736754 - Tigger2a DNA MER2_type -324 110 2 * 2531 57 3 0 chr9 34125960 34126258 -83736369 + AluY SINE Alu 1 299 -12 510 279 19 43 chr9 34126413 34126621 -83736006 + L1MC4a LINE L1 6542 6744 -1064 945 174 47 6 chr9 34126621 34126935 -83735692 - Charlie1b DNA MER1_type 0 523 118 1392 154 112 70 chr9 34126964 34127127 -83735500 - MER2 DNA MER2_type 0 345 190 3688 140 60 15 chr9 34127127 34127712 -83734915 - LTR36 LTR ERV1 0 611 1 1392 154 112 70 chr9 34127712 34127789 -83734838 - MER2 DNA MER2_type -155 190 118 1798 209 36 50 chr9 34127789 34128229 -83734398 + MER57B LTR ERV1 1 434 0 1392 154 112 70 chr9 34128229 34128317 -83734310 - MER2 DNA MER2_type -227 118 2 459 244 0 0 chr9 34128318 34128408 -83734219 - Charlie1b DNA MER1_type -433 90 1 1136 145 10 117 chr9 34128408 34128698 -83733929 + L1MC5 LINE L1 6743 7001 -960 3360 178 65 42 chr9 34128698 34129341 -83733286 + MER21B LTR ERV1 1 664 -199 4084 84 9 2 chr9 34129341 34129891 -83732736 + MER41A LTR ERV1 1 554 0 3360 178 65 42 chr9 34129891 34129995 -83732632 + MER21B LTR ERV1 664 764 -99 1054 244 72 36 chr9 34130114 34130614 -83732013 + L1MC5 LINE L1 6998 7515 -446 670 231 67 37 chr9 34130618 34130917 -83731710 + L1MC5 LINE L1 7609 7916 -45 21 0 0 0 chr9 34130917 34130938 -83731689 + AT_rich Low_complexity Low_complexity 1 21 0 545 188 89 0 chr9 34130945 34131046 -83731581 + FLAM_C SINE Alu 1 110 -33 737 265 85 45 chr9 34131290 34131804 -83730823 - LTR38B LTR ERV1 -11 591 31 261 0 0 0 chr9 34132714 34132743 -83729884 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2419 58 7 3 chr9 34133238 34133548 -83729079 + AluY SINE Alu 1 311 0 815 142 8 8 chr9 34134578 34134705 -83727922 + FLAM_C SINE Alu 1 127 -16 3513 121 36 61 chr9 34134709 34134840 -83727787 - L1MA7 LINE L1 -20 6271 6138 2027 155 3 3 chr9 34134840 34135150 -83727477 + AluJb SINE Alu 1 310 -2 3513 121 36 61 chr9 34135150 34135721 -83726906 - L1MA7 LINE L1 -153 6138 5587 7966 85 6 3 chr9 34136165 34137310 -83725317 - Tigger1 DNA MER2_type -445 1973 826 1812 180 12 0 chr9 34137309 34137653 -83724974 - Tigger1 DNA MER2_type -2070 348 1 * 2032 107 11 11 chr9 34137696 34138000 -83724627 + AluSx SINE Alu 3 306 0 740 286 143 26 chr9 34138809 34139194 -83723433 - MLT1J2 LTR MaLR 0 450 21 2255 95 16 0 chr9 34140637 34140942 -83721685 - AluSp SINE Alu -3 310 1 951 255 66 7 chr9 34141238 34141524 -83721103 + L1MEc LINE L1 39 341 -6055 280 284 46 0 chr9 34141558 34141667 -83720960 + L1MEc LINE L1 397 510 -5886 * 484 255 37 5 chr9 34141653 34141841 -83720786 + L1MEc LINE L1 809 1002 -5394 6601 76 9 7 chr9 34141841 34142805 -83719822 + L1PA10 LINE L1 5200 6165 -3 4609 231 55 35 chr9 34142815 34143904 -83718723 + L1MB1 LINE L1 2955 4089 -2057 673 191 0 52 chr9 34143904 34144040 -83718587 - FLAM_A SINE Alu 0 133 5 4609 231 55 35 chr9 34144040 34144579 -83718048 + L1MB1 LINE L1 4089 4616 -1530 1050 258 51 92 chr9 34144580 34145948 -83716679 + L1MB1 LINE L1 5264 6002 -166 3346 201 24 38 chr9 34144658 34144800 -83717827 + L1ME1 LINE L1 5318 5460 -706 2203 111 0 7 chr9 34144800 34145089 -83717538 - AluSx SINE Alu -25 287 1 3346 201 24 38 chr9 34145089 34145162 -83717465 + L1ME1 LINE L1 5460 5533 -633 2455 90 0 0 chr9 34145162 34145472 -83717155 - AluSx SINE Alu -2 310 1 3346 201 24 38 chr9 34145472 34146114 -83716513 + L1ME1 LINE L1 5533 6164 -2 301 333 9 9 chr9 34146602 34146713 -83715914 - L2 LINE L2 0 3272 3162 268 352 16 8 chr9 34146743 34146868 -83715759 - LTR67 LTR ERVL 0 557 432 287 337 22 0 chr9 34147165 34147254 -83715373 - L2 LINE L2 -277 2995 2905 1216 307 35 12 chr9 34147295 34147787 -83714840 - L2 LINE L2 -518 2796 2294 2862 7 0 0 chr9 34147991 34148300 -83714327 + AluY SINE Alu 1 309 -2 6555 121 36 6 chr9 34148384 34150435 -83712192 + L1MA2 LINE L1 4188 6304 0 21 0 0 0 chr9 34150435 34150456 -83712171 + AT_rich Low_complexity Low_complexity 1 21 0 360 325 29 48 chr9 34150703 34150912 -83711715 + MIR SINE MIR 2 206 -56 * 409 362 29 14 chr9 34150883 34151090 -83711537 - L2 LINE L2 -975 2339 2130 252 309 94 40 chr9 34152388 34152537 -83710090 - MIR SINE MIR -101 161 5 230 290 30 20 chr9 34152710 34152810 -83709817 - MIR SINE MIR -13 249 149 298 0 0 0 chr9 34153723 34153759 -83708868 + L1MA5A LINE L1 6041 6076 -221 2459 46 10 3 chr9 34153913 34154220 -83708407 + AluY SINE Alu 1 309 -2 439 317 131 6 chr9 34155074 34155257 -83707370 + MIR SINE MIR 2 207 -55 2005 112 6 3 chr9 34155383 34155696 -83706931 - L1MA5A LINE L1 -6 6291 5978 332 394 80 0 chr9 34155794 34155931 -83706696 - MIR3 SINE MIR -57 151 4 547 230 79 43 chr9 34156021 34156059 -83706568 - MLT1J LTR MaLR -19 492 457 1557 138 120 14 chr9 34156059 34156335 -83706292 + AluSg SINE Alu 1 305 -5 547 230 79 43 chr9 34156335 34156645 -83705982 - MLT1J LTR MaLR -54 457 108 2475 207 28 32 chr9 34156939 34157590 -83705037 + L1MB7 LINE L1 5476 6123 -61 806 173 0 0 chr9 34157590 34157717 -83704910 - FLAM_C SINE Alu -6 127 1 4147 76 2 13 chr9 34158516 34159070 -83703557 - L1PA8A LINE L1 -2 6129 5582 21 0 0 0 chr9 34159075 34159096 -83703531 + AT_rich Low_complexity Low_complexity 1 21 0 482 214 0 0 chr9 34159267 34159370 -83703257 - L1 LINE L1 -3451 2695 2593 * 32084 87 9 54 chr9 34159360 34165803 -83696824 - L1PA4 LINE L1 -1 6154 12 216 0 0 0 chr9 34165850 34165874 -83696753 + (A)n Simple_repeat Simple_repeat 1 24 0 767 268 0 11 chr9 34166283 34166473 -83696154 + AluJo SINE Alu 118 305 -7 365 231 98 10 chr9 34166870 34166994 -83695633 + MIR SINE MIR 50 188 -63 3459 101 38 23 chr9 34167993 34168597 -83694030 - LOR1-int LTR ERV1 -3321 4799 4187 15931 33 1 0 chr9 34168697 34171381 -83691246 + L1PA2 LINE L1 3470 6155 0 420 200 60 43 chr9 34171478 34171663 -83690964 + L1MC/D LINE L1 5260 5447 -2361 38879 35 24 2 chr9 34172143 34177947 -83684680 - L1PA4 LINE L1 -2 6153 218 805 239 54 28 chr9 34178048 34178438 -83684189 - L1MEc LINE L1 -2792 3423 3024 6601 76 20 0 chr9 34178448 34179412 -83683215 - L1PA10 LINE L1 -3 6165 5200 484 255 37 5 chr9 34179412 34179600 -83683027 - L1MEc LINE L1 -5394 1002 809 280 284 46 0 chr9 34179586 34179695 -83682932 - L1MEc LINE L1 -5886 510 397 * 1047 255 66 7 chr9 34179729 34180015 -83682612 - L1MEc LINE L1 -6055 341 39 2294 111 3 0 chr9 34180311 34180618 -83682009 + AluSp SINE Alu 1 308 -5 258 162 0 0 chr9 34180631 34180668 -83681959 + Alu SINE Alu 1 37 -264 * 297 79 0 0 chr9 34180667 34180705 -83681922 + FLAM SINE Alu 86 123 -10 488 188 69 31 chr9 34180728 34180888 -83681739 + MER20B DNA MER1_type 581 746 -37 1720 171 30 13 chr9 34181475 34181774 -83680853 + AluJo SINE Alu 1 304 -8 22 0 0 0 chr9 34181988 34182010 -83680617 + AT_rich Low_complexity Low_complexity 1 22 0 201 293 13 13 chr9 34182192 34182267 -83680360 + GA-rich Low_complexity Low_complexity 2 76 0 26 0 0 0 chr9 34182702 34182728 -83679899 + AT_rich Low_complexity Low_complexity 1 26 0 186 333 0 0 chr9 34182760 34182817 -83679810 + L2 LINE L2 3257 3313 0 233 309 21 21 chr9 34182998 34183092 -83679535 - L2 LINE L2 -12 3301 3208 2255 121 0 0 chr9 34183468 34183773 -83678854 + AluSx SINE Alu 1 305 -7 2338 169 38 116 chr9 34183801 34184267 -83678360 - L1ME LINE L1 -361 5805 5304 1728 172 3 35 chr9 34184267 34184581 -83678046 - AluJo SINE Alu 0 312 9 2338 169 38 116 chr9 34184581 34185234 -83677393 - L1ME LINE L1 -862 5304 4747 24 0 0 0 chr9 34185740 34185764 -83676863 + AT_rich Low_complexity Low_complexity 1 24 0 186 103 0 0 chr9 34185786 34185815 -83676812 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 246 314 20 69 chr9 34185861 34185963 -83676664 - L2 LINE L2 -82 3190 3094 1198 343 136 25 chr9 34186000 34187728 -83674899 + L2 LINE L2 1280 3240 -32 1469 188 34 35 chr9 34187737 34187787 -83674840 - MLT1D LTR MaLR 0 505 456 2029 104 7 0 chr9 34187787 34188056 -83674571 - AluSx SINE Alu -6 306 36 1469 188 34 35 chr9 34188056 34188452 -83674175 - MLT1D LTR MaLR -49 456 1 239 367 45 28 chr9 34188484 34188661 -83673966 - L2 LINE L2 -214 3058 2879 243 257 137 29 chr9 34189070 34189245 -83673382 - L1ME4a LINE L1 -14 6107 5914 530 275 87 106 chr9 34189909 34190276 -83672351 + L2 LINE L2 2903 3262 -10 218 333 125 0 chr9 34190286 34190382 -83672245 - L2 LINE L2 -8 3264 3157 2231 99 10 3 chr9 34190666 34190960 -83671667 - AluSx SINE Alu -16 296 1 2375 53 23 23 chr9 34196712 34197013 -83665614 - AluY SINE Alu -10 301 1 1957 129 7 7 chr9 34197023 34197310 -83665317 - AluSx SINE Alu -25 287 1 814 171 0 23 chr9 34197438 34197567 -83665060 - FLAM_C SINE Alu -7 126 1 1183 255 96 33 chr9 34197568 34198248 -83664379 - L1ME4a LINE L1 -259 5911 5176 995 101 20 7 chr9 34198280 34198429 -83664198 - AluSg/x SINE Alu -1 311 161 2011 254 75 31 chr9 34198496 34199240 -83663387 - L1MC4a LINE L1 -1776 6312 5536 364 315 9 30 chr9 34199307 34199567 -83663060 - L1MC4a LINE L1 -4752 1855 1449 1135 158 0 0 chr9 34199573 34199750 -83662877 - AluSx SINE Alu 0 310 134 625 141 0 0 chr9 34199750 34199835 -83662792 - AluSx SINE Alu -226 86 2 522 290 60 47 chr9 34199907 34200345 -83662282 - L1MCa LINE L1 -4905 1511 906 25 0 0 0 chr9 34200452 34200477 -83662150 + AT_rich Low_complexity Low_complexity 1 25 0 2530 279 61 41 chr9 34201074 34202193 -83660434 - L2 LINE L2 -105 3208 1980 2229 68 10 20 chr9 34202194 34202486 -83660141 + AluY SINE Alu 1 289 -22 522 124 0 0 chr9 34202486 34202575 -83660052 + (GGGGA)n Simple_repeat Simple_repeat 1 89 0 25 31 0 0 chr9 34203111 34203143 -83659484 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 34203349 34203370 -83659257 + AT_rich Low_complexity Low_complexity 1 21 0 6626 84 17 0 chr9 34203517 34204679 -83657948 - L1PA14 LINE L1 -1 6160 4981 189 107 0 0 chr9 34204767 34204795 -83657832 + (CAT)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr9 34204884 34204905 -83657722 + AT_rich Low_complexity Low_complexity 1 21 0 434 298 38 42 chr9 34205027 34205195 -83657432 - MIR SINE MIR -63 145 5 1845 115 0 83 chr9 34205309 34205623 -83657004 - AluSx SINE Alu -24 288 1 2408 91 0 0 chr9 34206416 34206724 -83655903 + AluY SINE Alu 1 308 -3 1288 153 115 10 chr9 34206977 34207265 -83655362 - MER33 DNA MER1_type -6 318 1 275 215 62 132 chr9 34207438 34207506 -83655121 + MIR SINE MIR 6 60 -202 2012 103 0 81 chr9 34207506 34207827 -83654800 + AluSg SINE Alu 1 295 -15 275 215 62 132 chr9 34207827 34207902 -83654725 + MIR SINE MIR 60 139 -123 344 339 81 11 chr9 34208337 34208523 -83654104 + MIR SINE MIR 10 208 -54 872 261 33 8 chr9 34209432 34209673 -83652954 + MIR SINE MIR 6 252 -10 548 327 10 35 chr9 34209862 34210064 -83652563 - MIR3 SINE MIR -7 201 5 1425 215 115 40 chr9 34210426 34210898 -83651729 + MLT1F1 LTR MaLR 3 506 -59 207 0 0 0 chr9 34211187 34211210 -83651417 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 10963 137 49 4 chr9 34211544 34213266 -83649361 + L1PA14 LINE L1 1032 2831 -4750 * 17795 176 16 5 chr9 34213255 34217536 -83645091 + L1PA14 LINE L1 3275 7599 0 2164 131 0 0 chr9 34217736 34218033 -83644594 - AluSx SINE Alu -15 297 1 1024 103 12 6 chr9 34218057 34218222 -83644405 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 335 274 33 72 chr9 34218907 34219060 -83643567 + MIR SINE MIR 37 183 -79 * 647 265 114 9 chr9 34219041 34219252 -83643375 - MIR SINE MIR -21 241 9 30 0 0 0 chr9 34219843 34219873 -83642754 + AT_rich Low_complexity Low_complexity 1 30 0 284 253 117 93 chr9 34220084 34220246 -83642381 - MIR3 SINE MIR -10 198 33 378 276 32 65 chr9 34220470 34220577 -83642050 - MIR SINE MIR -70 192 83 2323 126 54 14 chr9 34220577 34220927 -83641700 - THE1B LTR MaLR 0 364 1 12313 82 32 1 chr9 34220927 34222460 -83640167 - THE1B-int LTR MaLR 0 1580 1 2264 104 72 23 chr9 34222460 34222807 -83639820 - THE1B LTR MaLR 0 364 1 378 276 32 65 chr9 34222807 34222882 -83639745 - MIR SINE MIR -176 86 14 214 267 89 10 chr9 34223852 34223953 -83638674 + L2 LINE L2 1904 2012 -1302 1005 272 16 4 chr9 34223991 34224237 -83638390 - MIR SINE MIR -12 250 2 659 156 9 0 chr9 34224263 34224372 -83638255 - MLT1A2 LTR MaLR 0 374 265 775 282 97 0 chr9 34224855 34225114 -83637513 + MLT1H LTR MaLR 266 549 0 1261 147 41 9 chr9 34225673 34225891 -83636736 + AluJo SINE Alu 87 311 -1 597 295 50 30 chr9 34226006 34226206 -83636421 + MIR3 SINE MIR 1 204 -4 2395 144 53 5 chr9 34226532 34226927 -83635700 - MSTA LTR MaLR -14 414 1 478 217 0 62 chr9 34227077 34227206 -83635421 - L2 LINE L2 0 3313 3193 262 288 143 114 chr9 34227422 34227815 -83634812 - L2 LINE L2 -1 3271 2868 449 250 23 93 chr9 34227827 34227958 -83634669 + MER5B DNA MER1_type 13 131 -47 2299 100 0 3 chr9 34227958 34228257 -83634370 + AluSc SINE Alu 1 298 -11 449 250 23 93 chr9 34228257 34228297 -83634330 + MER5B DNA MER1_type 131 172 -6 628 250 58 23 chr9 34228321 34228366 -83634261 - MER5A DNA MER1_type 0 189 147 3709 114 39 4 chr9 34228366 34228899 -83633728 + L1PB3 LINE L1 5596 6147 -7 628 250 58 23 chr9 34228899 34229025 -83633602 - MER5A DNA MER1_type -42 147 12 775 201 63 6 chr9 34229040 34229199 -83633428 + MER5A DNA MER1_type 1 168 -21 1798 93 22 0 chr9 34229341 34229566 -83633061 + MER30 DNA MER1_type 1 230 0 295 234 11 64 chr9 34230108 34230202 -83632425 + MIR3 SINE MIR 68 156 -52 5492 74 15 21 chr9 34230524 34231243 -83631384 + L1PA8 LINE L1 5445 6159 -13 358 284 58 39 chr9 34231299 34231454 -83631173 + Charlie8 DNA MER1_type 1 158 -2259 445 237 7 29 chr9 34233175 34233314 -83629313 + MIR3 SINE MIR 68 203 -5 332 248 61 71 chr9 34233621 34233819 -83628808 + MIR3 SINE MIR 9 204 -4 255 295 93 14 chr9 34234353 34234492 -83628135 + MER5A DNA MER1_type 7 156 -33 2220 103 0 10 chr9 34234667 34234957 -83627670 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr9 34235278 34235300 -83627327 + (T)n Simple_repeat Simple_repeat 1 22 0 2270 112 0 0 chr9 34235575 34235880 -83626747 - AluSx SINE Alu -7 305 1 27 0 0 0 chr9 34236592 34236619 -83626008 + AT_rich Low_complexity Low_complexity 1 27 0 465 336 129 45 chr9 34237654 34238726 -83623901 + L2 LINE L2 863 2024 -1290 206 276 281 5 chr9 34238746 34238956 -83623671 + L2 LINE L2 2222 2489 -825 203 61 30 0 chr9 34241490 34241523 -83621104 + (TC)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr9 34241523 34241562 -83621065 + (CA)n Simple_repeat Simple_repeat 1 39 0 511 285 7 7 chr9 34241852 34241989 -83620638 + MIR SINE MIR 21 157 -105 795 154 32 19 chr9 34242025 34242181 -83620446 + L1MA1 LINE L1 14 171 -7394 * 11677 171 14 14 chr9 34242179 34243430 -83619197 + L1MA1 LINE L1 3200 4449 -3116 2128 103 43 0 chr9 34243430 34243712 -83618915 + AluY SINE Alu 10 303 -8 11677 171 14 14 chr9 34243712 34245127 -83617500 + L1MA1 LINE L1 4449 5867 -1698 40981 62 10 6 chr9 34245138 34251258 -83611369 + L1PA4 LINE L1 11 6153 -2 2092 124 7 0 chr9 34251650 34251932 -83610695 + AluSx SINE Alu 1 284 -28 21 82 0 0 chr9 34252407 34252456 -83610171 + AT_rich Low_complexity Low_complexity 1 49 0 7203 106 20 36 chr9 34252914 34254830 -83607797 + L1MA1 LINE L1 5851 7721 0 5574 86 32 62 chr9 34254934 34255825 -83606802 + SVA Other Other 522 1386 0 2091 25 0 0 chr9 34255985 34256225 -83606402 + L1PA4 LINE L1 5916 6155 0 384 278 45 15 chr9 34257394 34257527 -83605100 + MIR3 SINE MIR 3 139 -69 331 269 151 0 chr9 34259451 34259570 -83603057 + MIR SINE MIR 75 211 -51 559 238 127 79 chr9 34261612 34261927 -83600700 - MLT1K LTR MaLR -50 538 209 309 274 137 16 chr9 34262160 34262284 -83600343 + L2 LINE L2 2920 3058 -214 2172 204 102 11 chr9 34262598 34263118 -83599509 + MLT1F1 LTR MaLR 1 567 0 205 225 0 0 chr9 34265663 34265703 -83596924 + MER5B DNA MER1_type 10 49 -129 289 352 99 0 chr9 34266612 34266774 -83595853 - MIR SINE MIR -11 251 74 316 266 58 50 chr9 34267829 34268070 -83594557 + L2 LINE L2 2864 3106 -166 234 200 40 0 chr9 34268152 34268202 -83594425 + L2 LINE L2 3220 3271 -1 497 274 124 69 chr9 34268958 34269337 -83593290 - MLT1K LTR MaLR -90 498 99 1495 198 22 19 chr9 34269372 34269640 -83592987 + AluJo SINE Alu 1 269 -43 552 104 0 0 chr9 34269642 34269719 -83592908 + MADE1 DNA Mariner 1 77 -3 535 247 63 35 chr9 34270003 34270177 -83592450 - MER20B DNA MER1_type -604 179 1 342 365 122 22 chr9 34270572 34270942 -83591685 + L3 LINE CR1 1067 1473 -104 2429 82 0 32 chr9 34271032 34271373 -83591254 + MER41A LTR ERV1 1 330 -224 43119 37 24 1 chr9 34271373 34277382 -83585245 + L1PA2 LINE L1 4 6155 0 1761 77 25 0 chr9 34277396 34277631 -83584996 + MER41A LTR ERV1 314 554 0 181 158 26 0 chr9 34278982 34279020 -83583607 - L2 LINE L2 -4 3268 3230 183 293 38 115 chr9 34279903 34280060 -83582567 + L2 LINE L2 2915 3059 -213 225 94 0 0 chr9 34280100 34280132 -83582495 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1216 142 90 5 chr9 34280136 34280347 -83582280 - AluJb SINE Alu -29 283 55 257 303 118 25 chr9 34280414 34280533 -83582094 + L2 LINE L2 3143 3272 0 204 125 0 0 chr9 34281368 34281400 -83581227 + (T)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr9 34281404 34281441 -83581186 + AT_rich Low_complexity Low_complexity 1 37 0 1056 90 0 0 chr9 34281448 34281592 -83581035 - L1PA10 LINE L1 -4 6164 6021 334 56 19 19 chr9 34282950 34283004 -83579623 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 216 255 0 61 chr9 34283758 34283856 -83578771 + GA-rich Low_complexity Low_complexity 4 95 0 377 304 57 18 chr9 34284124 34284469 -83578158 - LTR16C LTR ERVL -47 410 71 276 299 154 0 chr9 34285076 34285193 -83577434 - MIR SINE MIR -75 187 53 202 321 107 8 chr9 34285218 34285349 -83577278 + L2 LINE L2 2926 3069 -203 410 276 0 0 chr9 34285582 34285680 -83576947 - MLT1K LTR MaLR -329 259 162 1032 232 172 76 chr9 34285818 34286306 -83576321 - MLT1G1 LTR MaLR -60 535 1 2028 103 30 30 chr9 34286495 34286796 -83575831 - AluSc SINE Alu -8 301 1 180 191 32 63 chr9 34286796 34286859 -83575768 + MIR SINE MIR 66 126 -136 327 25 0 0 chr9 34287155 34287195 -83575432 + (CA)n Simple_repeat Simple_repeat 2 41 0 2170 113 3 0 chr9 34287458 34287758 -83574869 - AluJb SINE Alu -11 301 1 209 289 0 0 chr9 34288177 34288229 -83574398 + L2 LINE L2 3262 3313 0 184 143 29 0 chr9 34288396 34288431 -83574196 - MIR3 SINE MIR -6 202 167 511 230 33 26 chr9 34288539 34288691 -83573936 + MER103 DNA DNA 4 156 -10 1490 102 0 0 chr9 34289130 34289317 -83573310 - AluSc SINE Alu -17 292 106 869 118 7 22 chr9 34289323 34289458 -83573169 - FLAM_C SINE Alu 0 143 11 350 280 121 40 chr9 34289563 34289861 -83572766 + L1MC/D LINE L1 4533 4854 -1292 3257 146 87 0 chr9 34289953 34290515 -83572112 - MER73 LTR ERVL -32 612 2 317 378 30 0 chr9 34290516 34290680 -83571947 + L1MC/D LINE L1 4978 5146 -1000 43434 37 21 1 chr9 34290693 34296726 -83565901 + L1PA2 LINE L1 1 6155 0 502 200 60 43 chr9 34296823 34297008 -83565619 + L1MC/D LINE L1 5260 5447 -2361 180 0 0 0 chr9 34297167 34297187 -83565440 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr9 34297233 34297263 -83565364 + AT_rich Low_complexity Low_complexity 1 30 0 182 235 62 49 chr9 34297971 34298052 -83564575 - L2 LINE L2 -326 2946 2865 266 277 61 34 chr9 34299233 34299381 -83563246 - MER117 DNA MER1_type -39 158 7 863 187 23 6 chr9 34299395 34299566 -83563061 - MER20 DNA MER1_type 0 219 46 607 323 39 22 chr9 34300008 34300237 -83562390 - MIR SINE MIR -10 252 20 1026 193 11 11 chr9 34300669 34300856 -83561771 - MER5A DNA MER1_type 0 189 3 1970 142 0 10 chr9 34302585 34302881 -83559746 - AluSx SINE Alu -19 293 1 511 269 159 10 chr9 34302955 34303163 -83559464 - MIR SINE MIR -1 261 23 2533 156 26 22 chr9 34305064 34305558 -83557069 - MER11A LTR ERVK -1 1265 770 1381 61 0 0 chr9 34305554 34305719 -83556908 - MER11B LTR ERVK -1071 165 1 * 3721 140 35 57 chr9 34306224 34306921 -83555706 + L1MA7 LINE L1 5594 6276 -15 1733 126 4 11 chr9 34306921 34307182 -83555445 + AluSx SINE Alu 54 312 0 3721 140 35 57 chr9 34307182 34307198 -83555429 + L1MA7 LINE L1 6276 6291 0 308 364 55 0 chr9 34307822 34307932 -83554695 - MIR SINE MIR -126 136 21 546 290 148 23 chr9 34308798 34309015 -83553612 + MIR SINE MIR 17 260 -2 2545 248 141 48 chr9 34309206 34309359 -83553268 - L1MEc LINE L1 -2196 4019 3882 3048 107 26 22 chr9 34309359 34309816 -83552811 - L1PB1 LINE L1 -3 6148 5690 2545 248 141 48 chr9 34309816 34311363 -83551264 - L1MEc LINE L1 -2333 3882 2106 430 268 71 28 chr9 34311366 34311720 -83550907 - L1MEc LINE L1 -4974 1422 1054 2144 136 0 3 chr9 34312124 34312426 -83550201 + AluSq SINE Alu 1 301 -12 361 171 23 11 chr9 34312445 34312533 -83550094 + A-rich Low_complexity Low_complexity 3 91 0 209 211 26 0 chr9 34312762 34312800 -83549827 + MIR SINE MIR 206 244 -18 * 226 167 93 19 chr9 34312766 34312820 -83549807 + L2 LINE L2 3256 3313 0 2142 118 3 20 chr9 34313506 34313640 -83548987 + AluSx SINE Alu 1 136 -176 2316 92 3 3 chr9 34313640 34313943 -83548684 + AluSp SINE Alu 1 303 -10 2142 118 3 20 chr9 34313943 34314114 -83548513 + AluSx SINE Alu 136 301 -11 456 230 153 37 chr9 34314241 34314440 -83548187 - MLT1K LTR MaLR -248 340 140 235 294 20 59 chr9 34314880 34314982 -83547645 + MIR SINE MIR 31 128 -80 343 357 101 12 chr9 34315475 34315643 -83546984 + MIR3 SINE MIR 16 198 -10 190 363 0 25 chr9 34316115 34316195 -83546432 + L2 LINE L2 2988 3065 -207 1203 272 78 23 chr9 34316223 34316709 -83545918 - LTR33 LTR ERVL -2 519 7 226 284 174 18 chr9 34316806 34316915 -83545712 + L2 LINE L2 3180 3305 -8 4419 100 58 75 chr9 34317106 34317905 -83544722 - LTR1 LTR ERV1 0 785 1 1055 133 66 0 chr9 34317962 34318128 -83544499 + L1PB3 LINE L1 5978 6154 0 559 147 31 54 chr9 34318139 34318268 -83544359 + LTR37A LTR ERV1 46 171 -255 484 242 93 6 chr9 34318540 34318701 -83543926 + L1ME3A LINE L1 4565 4739 -1407 1911 272 64 27 chr9 34318706 34319191 -83543436 + L1ME3A LINE L1 4783 5249 -921 2456 85 0 0 chr9 34319191 34319498 -83543129 - AluY SINE Alu -4 307 1 1911 272 64 27 chr9 34319498 34320139 -83542488 + L1ME3A LINE L1 5249 5951 -219 987 219 105 42 chr9 34320177 34320509 -83542118 - MLT1G LTR MaLR -7 583 156 235 172 31 31 chr9 34320602 34320666 -83541961 - MLT1G LTR MaLR -459 83 20 310 298 2 56 chr9 34320713 34320828 -83541799 + L1ME3A LINE L1 5970 6078 -84 362 236 30 73 chr9 34321000 34321165 -83541462 + L1ME4a LINE L1 5961 6118 -3 786 236 15 26 chr9 34321694 34321889 -83540738 + MIR SINE MIR 56 248 -14 338 276 46 106 chr9 34321952 34322169 -83540458 - MIR SINE MIR -30 232 29 335 154 26 26 chr9 34323599 34323677 -83538950 - MIR3 SINE MIR -6 202 125 569 253 79 62 chr9 34324181 34324486 -83538141 - L1ME4a LINE L1 -238 5883 5574 240 86 35 17 chr9 34324486 34324544 -83538083 + T-rich Low_complexity Low_complexity 2 60 0 248 267 58 12 chr9 34324836 34324922 -83537705 + L1ME4a LINE L1 6000 6089 -32 1016 199 46 32 chr9 34324939 34325038 -83537589 - MER20 DNA MER1_type 0 219 123 2386 122 130 16 chr9 34325038 34325422 -83537205 + MSTA LTR MaLR 1 428 0 1016 199 46 32 chr9 34325422 34325538 -83537089 - MER20 DNA MER1_type -96 123 1 903 265 50 0 chr9 34325607 34325845 -83536782 - MIR SINE MIR 0 262 13 242 188 31 31 chr9 34326133 34326197 -83536430 + CT-rich Low_complexity Low_complexity 3 66 0 227 189 19 0 chr9 34326211 34326264 -83536363 + CT-rich Low_complexity Low_complexity 4 57 0 1247 253 87 9 chr9 34326602 34327048 -83535579 - LTR16C LTR ERVL -8 483 3 328 239 77 51 chr9 34327073 34327190 -83535437 - L2 LINE L2 0 3272 3153 25 51 0 0 chr9 34327291 34327330 -83535297 + AT_rich Low_complexity Low_complexity 1 39 0 270 313 10 20 chr9 34327425 34327524 -83535103 - MIR3 SINE MIR -102 106 9 185 302 0 0 chr9 34327543 34327586 -83535041 + L2 LINE L2 3208 3250 -22 2417 192 27 10 chr9 34327642 34328121 -83534506 - L1MB7 LINE L1 -153 6267 5781 21 57 0 0 chr9 34328121 34328156 -83534471 + AT_rich Low_complexity Low_complexity 1 35 0 1194 163 0 0 chr9 34329644 34329847 -83532780 - L1MA3 LINE L1 0 6305 6103 478 229 69 0 chr9 34329859 34330003 -83532624 - L1ME3A LINE L1 -10 6160 6007 1143 163 79 40 chr9 34330895 34331172 -83531455 + L1MA8 LINE L1 6003 6290 -1 903 196 43 0 chr9 34331476 34331639 -83530988 + AluJb SINE Alu 130 299 -13 354 204 29 0 chr9 34331639 34331742 -83530885 + GA-rich Low_complexity Low_complexity 1 106 0 205 67 33 0 chr9 34331742 34331772 -83530855 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 2264 92 0 0 chr9 34331781 34332254 -83530373 + AluY SINE Alu 1 311 0 918 143 12 119 chr9 34332254 34332389 -83530238 + L1MA4 LINE L1 3447 3549 -2597 3684 142 29 11 chr9 34332389 34333016 -83529611 + L1MA4 LINE L1 5662 6299 -1 918 143 12 119 chr9 34333016 34333115 -83529512 + L1MA4 LINE L1 3549 3657 -2489 * 10302 208 86 55 chr9 34333109 34334740 -83527887 - L1MB7 LINE L1 -931 5451 3871 755 177 24 8 chr9 34334740 34334864 -83527763 - AluJo SINE Alu -173 139 14 10302 208 86 55 chr9 34334864 34335358 -83527269 - L1MB7 LINE L1 -2511 3871 3394 1397 147 92 55 chr9 34335358 34335660 -83526967 - AluJb SINE Alu 0 312 1 10302 208 86 55 chr9 34335660 34337577 -83525050 - L1MB7 LINE L1 -2988 3394 1128 902 187 0 7 chr9 34337607 34337757 -83524870 + FAM SINE Alu 10 158 -27 1462 163 74 131 chr9 34337897 34338332 -83524295 + MLT2D LTR ERVL 5 414 0 1259 122 15 24 chr9 34338713 34338951 -83523676 - AluSq SINE Alu 0 337 102 713 215 139 0 chr9 34339002 34339146 -83523481 - FAM SINE Alu -11 164 1 195 288 0 45 chr9 34339211 34339277 -83523350 + L2 LINE L2 3250 3312 -1 358 109 0 0 chr9 34339277 34339323 -83523304 - THE1A LTR MaLR 0 355 310 1250 148 0 0 chr9 34339427 34339610 -83523017 + AluSg/x SINE Alu 122 304 -8 498 304 30 30 chr9 34339809 34340145 -83522482 - L1M4 LINE L1 -1315 4831 4496 1961 141 7 0 chr9 34341264 34341547 -83521080 - AluSx SINE Alu -27 285 1 596 289 101 31 chr9 34341651 34341879 -83520748 + MLT1I LTR MaLR 166 409 0 385 284 73 9 chr9 34341893 34342002 -83520625 + L2 LINE L2 3193 3308 -5 289 284 0 12 chr9 34342013 34342094 -83520533 + MIR3 SINE MIR 128 207 -1 305 366 36 0 chr9 34342655 34342767 -83519860 - MIR3 SINE MIR -7 201 86 212 311 16 49 chr9 34342792 34342914 -83519713 - L2 LINE L2 -780 2534 2417 714 116 9 0 chr9 34342914 34343026 -83519601 + Ricksha DNA DNA 2 114 -1932 517 321 58 49 chr9 34343028 34343374 -83519253 - L2 LINE L2 -975 2339 1991 321 307 113 41 chr9 34343791 34344153 -83518474 + L2 LINE L2 2440 2827 -487 579 251 80 27 chr9 34344227 34344414 -83518213 - MIR SINE MIR -13 249 53 208 261 7 7 chr9 34345801 34345943 -83516684 + GA-rich Low_complexity Low_complexity 1 142 0 307 291 24 63 chr9 34348415 34348542 -83514085 + MIR3 SINE MIR 83 204 -4 242 239 26 94 chr9 34350207 34350324 -83512303 - L1ME4a LINE L1 -72 6049 5941 1985 119 7 18 chr9 34351718 34352030 -83510597 - AluSx SINE Alu 0 309 1 242 328 74 67 chr9 34352162 34352461 -83510166 + L2 LINE L2 2922 3222 -50 21 0 0 0 chr9 34353504 34353525 -83509102 + AT_rich Low_complexity Low_complexity 1 21 0 5500 148 57 10 chr9 34353982 34354151 -83508476 + L1MA7 LINE L1 5082 5242 -1049 2552 113 16 19 chr9 34354151 34354514 -83508113 - THE1B LTR MaLR 0 364 3 5500 148 57 10 chr9 34354514 34355500 -83507127 + L1MA7 LINE L1 5242 6291 0 1371 205 59 62 chr9 34355518 34355908 -83506719 + MSTD LTR MaLR 8 396 0 505 209 11 0 chr9 34356466 34356557 -83506070 - MER5A DNA MER1_type 0 189 98 737 215 139 0 chr9 34356623 34356767 -83505860 - FAM SINE Alu -11 164 1 2285 121 75 26 chr9 34356898 34357245 -83505382 - THE1B LTR MaLR 0 364 1 12933 84 4 0 chr9 34357245 34358819 -83503808 - THE1B-int LTR MaLR 0 1580 1 2316 116 78 20 chr9 34358819 34359163 -83503464 - THE1B LTR MaLR 0 364 1 1004 118 0 0 chr9 34360351 34360486 -83502141 + FLAM_C SINE Alu 2 136 -7 3511 150 51 8 chr9 34360495 34361103 -83501524 + L1MA4 LINE L1 5661 6294 -6 39 0 0 0 chr9 34361103 34361142 -83501485 + AT_rich Low_complexity Low_complexity 1 39 0 1988 155 0 3 chr9 34361157 34361460 -83501167 - AluJb SINE Alu -10 302 1 1023 183 44 28 chr9 34361594 34361811 -83500816 - L1MC4 LINE L1 -811 7231 7008 312 28 0 0 chr9 34361811 34361847 -83500780 - L1MA9 LINE L1 0 6312 6277 1023 183 44 28 chr9 34361847 34361880 -83500747 - L1MC4 LINE L1 -1034 7008 6977 476 241 48 7 chr9 34361881 34362026 -83500601 - L1MC4 LINE L1 -997 7045 6895 2749 214 74 14 chr9 34362029 34362630 -83499997 + L1MC4 LINE L1 7281 7932 -110 1677 207 125 3 chr9 34362630 34362983 -83499644 + MSTD LTR MaLR 1 396 0 2749 214 74 14 chr9 34362983 34363086 -83499541 + L1MC4 LINE L1 7932 8027 -15 1576 271 88 11 chr9 34363248 34363702 -83498925 - LTR16C LTR ERVL 0 491 3 1860 157 45 33 chr9 34363789 34364120 -83498507 - MER1B DNA MER1_type 0 337 3 8802 158 62 21 chr9 34364801 34366393 -83496234 + L1MC1 LINE L1 29 1555 -4871 1508 205 34 3 chr9 34366393 34366690 -83495937 + AluJo SINE Alu 1 306 -6 8802 158 62 21 chr9 34366690 34366708 -83495919 + L1MC1 LINE L1 1555 1571 -4855 615 27 0 0 chr9 34366708 34366781 -83495846 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 8802 158 62 21 chr9 34366781 34367611 -83495016 + L1MC1 LINE L1 1571 2366 -4060 1340 218 56 68 chr9 34367611 34367965 -83494662 + MLT1B LTR MaLR 1 351 -39 1445 211 10 22 chr9 34367965 34368277 -83494350 - AluJo SINE Alu -4 308 1 1340 218 56 68 chr9 34368277 34368317 -83494310 + MLT1B LTR MaLR 351 390 0 8802 158 62 21 chr9 34368317 34369198 -83493429 + L1MC1 LINE L1 2366 3576 -2850 7939 181 32 36 chr9 34369565 34371588 -83491039 + L1MC1 LINE L1 3532 5569 -1044 2113 112 0 4 chr9 34371588 34371866 -83490761 + AluSc SINE Alu 1 277 -32 7939 181 32 36 chr9 34371866 34372905 -83489722 + L1MC1 LINE L1 5569 6611 -2 207 69 0 0 chr9 34373067 34373096 -83489531 + (TG)n Simple_repeat Simple_repeat 2 30 0 2228 110 0 10 chr9 34373657 34373957 -83488670 + AluSq SINE Alu 1 297 -16 228 74 0 0 chr9 34374047 34374074 -83488553 - L1PB3 LINE L1 -65 6089 6063 2154 130 7 0 chr9 34374075 34374383 -83488244 + AluSx SINE Alu 3 312 0 2798 173 122 58 chr9 34375787 34375969 -83486658 + LTR48 LTR ERV1 1 170 -617 1942 84 4 0 chr9 34375969 34376219 -83486408 + L1PA14 LINE L1 5894 6144 -17 2798 173 122 58 chr9 34376219 34376234 -83486393 + LTR48 LTR ERV1 170 183 -604 2130 132 3 0 chr9 34376234 34376545 -83486082 + AluSx SINE Alu 1 312 0 2798 173 122 58 chr9 34376545 34377086 -83485541 + LTR48 LTR ERV1 183 787 0 2325 78 3 0 chr9 34377381 34377677 -83484950 + AluSg SINE Alu 1 297 -13 218 333 0 0 chr9 34377678 34377738 -83484889 + MIR SINE MIR 181 240 -22 182 217 181 0 chr9 34380168 34380251 -83482376 - MIR SINE MIR -66 142 45 635 66 0 0 chr9 34380843 34380919 -83481708 - FLAM_A SINE Alu -33 109 34 2308 84 3 17 chr9 34381695 34381992 -83480635 - AluSg SINE Alu -17 293 1 316 178 22 78 chr9 34381996 34382086 -83480541 + MER113 DNA MER1_type? 38 122 -399 * 376 261 68 34 chr9 34382073 34382249 -83480378 + MER113 DNA MER1_type? 296 477 -44 767 100 0 0 chr9 34382252 34382352 -83480275 + HY1 scRNA scRNA 1 100 -12 194 31 0 62 chr9 34382355 34382387 -83480240 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 470 321 24 19 chr9 34383294 34383503 -83479124 - MIR SINE MIR 0 262 53 2047 164 105 48 chr9 34383890 34384367 -83478260 + MER67D LTR ERV1 6 509 -5 2155 203 45 91 chr9 34384743 34385324 -83477303 + MLT2B3 LTR ERVL 1 554 0 3930 162 55 9 chr9 34385642 34386284 -83476343 + LTR51 LTR ERV1 1 671 0 2627 210 48 6 chr9 34386414 34386933 -83475694 + MER87 LTR ERV1 1 541 0 222 333 111 0 chr9 34387076 34387175 -83475452 - MIR SINE MIR -17 245 136 321 305 139 51 chr9 34387391 34387843 -83474784 - L2 LINE L2 -891 2423 1932 790 265 56 5 chr9 34387931 34388146 -83474481 - MIR SINE MIR 0 262 37 245 292 39 31 chr9 34388397 34388527 -83474100 - L2 LINE L2 -4 3268 3138 1055 99 21 0 chr9 34388767 34388909 -83473718 + L1PB3 LINE L1 6008 6152 -2 24 32 0 0 chr9 34388909 34388940 -83473687 + AT_rich Low_complexity Low_complexity 1 31 0 1297 219 182 25 chr9 34388968 34389370 -83473257 + MER4C LTR ERV1 1 465 0 288 301 0 0 chr9 34389473 34389556 -83473071 - L2 LINE L2 -513 2801 2719 183 276 152 0 chr9 34390177 34390282 -83472345 - L2 LINE L2 -2405 909 789 936 193 155 98 chr9 34390359 34390461 -83472166 + MER34 LTR ERV1 1 96 -446 2508 52 7 3 chr9 34390461 34390771 -83471856 + AluY SINE Alu 1 311 0 936 193 155 98 chr9 34390771 34391166 -83471461 + MER34 LTR ERV1 96 526 -16 277 284 23 23 chr9 34391847 34391935 -83470692 + MIR SINE MIR 172 259 -3 372 43 0 0 chr9 34391936 34391982 -83470645 + (TTA)n Simple_repeat Simple_repeat 3 48 0 747 314 107 25 chr9 34392883 34393511 -83469116 - L2 LINE L2 -650 2664 1986 821 112 17 9 chr9 34393515 34393631 -83468996 + AluSq/x SINE Alu 2 118 -195 484 223 80 46 chr9 34394123 34394298 -83468329 + Charlie8 DNA MER1_type 96 276 -2141 239 240 90 30 chr9 34394380 34394480 -83468147 - L2 LINE L2 -23 3290 3185 195 42 0 0 chr9 34395410 34395434 -83467193 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 696 243 115 35 chr9 34395454 34395680 -83466947 + MIR SINE MIR 4 247 -15 1830 216 42 12 chr9 34395966 34396444 -83466183 - L1ME1 LINE L1 -7 6159 5672 723 191 65 94 chr9 34396807 34396836 -83465791 + L1ME3 LINE L1 5893 5921 -241 2591 144 65 0 chr9 34396836 34397238 -83465389 + MSTC LTR MaLR 1 428 0 723 191 65 94 chr9 34397238 34397485 -83465142 + L1ME3 LINE L1 5921 6161 -1 183 234 0 64 chr9 34397545 34397592 -83465035 + L2 LINE L2 3254 3297 -16 2014 147 0 0 chr9 34397599 34397891 -83464736 + AluSx SINE Alu 6 297 -15 201 244 0 0 chr9 34399821 34399862 -83462765 + (CA)n Simple_repeat Simple_repeat 1 41 0 1537 251 54 68 chr9 34400814 34401482 -83461145 + MER77 LTR ERV1 54 671 -6 834 225 122 0 chr9 34401716 34401938 -83460689 - MIR SINE MIR -3 259 11 231 284 12 49 chr9 34401977 34402058 -83460569 - L2 LINE L2 -791 2523 2446 306 312 177 21 chr9 34402116 34402257 -83460370 + MIR3 SINE MIR 14 176 -32 719 272 73 32 chr9 34402277 34402523 -83460104 + MIR SINE MIR 7 262 0 24 32 0 0 chr9 34402607 34402638 -83459989 + AT_rich Low_complexity Low_complexity 1 31 0 311 252 55 79 chr9 34403581 34403708 -83458919 + L2 LINE L2 3149 3272 0 1279 209 7 7 chr9 34404857 34405130 -83457497 - AluJo SINE Alu 0 312 40 207 194 0 0 chr9 34405297 34405333 -83457294 + MIR SINE MIR 111 146 -116 337 247 0 13 chr9 34407011 34407088 -83455539 - L2 LINE L2 -9 3304 3229 2411 128 11 40 chr9 34407761 34408136 -83454491 - THE1B LTR MaLR 0 364 1 323 280 295 10 chr9 34408470 34408670 -83453957 - MIR SINE MIR -4 258 2 2007 147 0 3 chr9 34408690 34408989 -83453638 - AluSg SINE Alu -10 300 3 534 289 158 11 chr9 34409083 34409356 -83453271 - L2 LINE L2 -1251 2063 1751 899 182 6 38 chr9 34409402 34409561 -83453066 + FRAM SINE Alu 1 154 -12 26 0 0 0 chr9 34409561 34409587 -83453040 + AT_rich Low_complexity Low_complexity 1 26 0 411 335 150 10 chr9 34409614 34409814 -83452813 - MIR SINE MIR -10 252 25 3285 275 113 36 chr9 34409943 34411486 -83451141 + L2 LINE L2 1628 3313 0 221 298 50 66 chr9 34411474 34411595 -83451032 - L2 LINE L2 -1718 1596 1478 * 2084 124 0 0 chr9 34411954 34412272 -83450355 - AluSx SINE Alu 0 318 1 939 162 0 14 chr9 34412316 34412464 -83450163 - AluJo SINE Alu -166 146 1 273 316 46 11 chr9 34412493 34412667 -83449960 - L2 LINE L2 -1193 2121 1942 625 250 17 17 chr9 34412784 34412956 -83449671 + MER5B DNA MER1_type 1 172 -6 2133 120 45 48 chr9 34413139 34413515 -83449112 - THE1C LTR MaLR 0 375 1 618 294 60 24 chr9 34413633 34413885 -83448742 - MIR SINE MIR 0 262 2 21 0 0 0 chr9 34415158 34415179 -83447448 + AT_rich Low_complexity Low_complexity 1 21 0 1743 186 0 10 chr9 34415187 34415498 -83447129 + AluJb SINE Alu 1 308 -4 200 329 7 103 chr9 34415498 34415596 -83447031 - MIR3 SINE MIR -74 134 53 1647 174 0 0 chr9 34415596 34415860 -83446767 + AluJo SINE Alu 37 300 -12 200 329 7 103 chr9 34415860 34415907 -83446720 - MIR3 SINE MIR -155 53 3 279 245 61 71 chr9 34416138 34416334 -83446293 + L2 LINE L2 2126 2319 -995 413 283 158 11 chr9 34416752 34416936 -83445691 - L2 LINE L2 0 3313 3103 * 1161 269 55 36 chr9 34416908 34417377 -83445250 - L2 LINE L2 -2235 1079 602 214 273 76 0 chr9 34417403 34417469 -83445158 + MIR3 SINE MIR 111 181 -27 292 42 0 42 chr9 34418309 34418357 -83444270 + (TTTC)n Simple_repeat Simple_repeat 2 47 0 2159 124 3 10 chr9 34418363 34418677 -83443950 - AluSq SINE Alu -1 312 1 1187 195 0 14 chr9 34418748 34418969 -83443658 + AluJb SINE Alu 82 299 -13 215 191 16 0 chr9 34419538 34419601 -83443026 + (TA)n Simple_repeat Simple_repeat 2 65 0 2517 60 0 0 chr9 34420045 34420343 -83442284 + AluY SINE Alu 1 298 -13 212 0 0 35 chr9 34420346 34420375 -83442252 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 2298 106 0 10 chr9 34420806 34421118 -83441509 - AluSx SINE Alu -3 309 1 869 200 108 44 chr9 34421177 34421427 -83441200 - L1ME3A LINE L1 0 6170 5905 335 132 19 0 chr9 34421501 34421554 -83441073 + MER92B LTR ERV1 1 54 -582 4931 114 7 8 chr9 34421847 34422569 -83440058 - HERVL-B3 LTR ERVL -4933 721 1 1195 192 46 29 chr9 34422569 34422943 -83439684 - MLT2B3 LTR ERVL 0 554 175 497 251 217 0 chr9 34423514 34423689 -83438938 + MIR SINE MIR 47 259 -3 191 283 0 0 chr9 34423864 34423910 -83438717 + MIR SINE MIR 206 251 -11 2190 125 0 0 chr9 34424575 34424870 -83437757 + AluSq SINE Alu 1 295 -18 286 291 13 73 chr9 34424892 34425043 -83437584 - L1MC5 LINE L1 -95 7866 7725 244 215 354 0 chr9 34425083 34425162 -83437465 + MER91C DNA MER1_type 34 140 0 1266 164 4 61 chr9 34425182 34425413 -83437214 - MER58A DNA MER1_type -1 223 6 260 211 13 40 chr9 34425893 34425969 -83436658 + GA-rich Low_complexity Low_complexity 3 76 0 501 163 0 0 chr9 34426393 34426479 -83436148 + L1M2 LINE L1 5413 5498 -799 287 303 62 91 chr9 34426495 34426703 -83435924 + L2 LINE L2 3027 3228 -44 395 324 58 43 chr9 34427424 34427631 -83434996 - MIR SINE MIR -51 211 2 401 250 71 0 chr9 34429650 34429790 -83432837 + MER117 DNA MER1_type 1 150 -47 499 350 153 14 chr9 34429817 34430183 -83432444 + L3 LINE CR1 813 1229 -348 730 155 16 16 chr9 34430652 34430781 -83431846 + L1MB4 LINE L1 6052 6180 0 709 207 7 22 chr9 34430790 34430925 -83431702 + FLAM_C SINE Alu 1 133 0 493 339 14 32 chr9 34430936 34431154 -83431473 + MIR SINE MIR 1 214 -48 303 276 31 0 chr9 34431187 34431285 -83431342 + L3 LINE CR1 1316 1416 -161 215 302 62 120 chr9 34431945 34432106 -83430521 + L2 LINE L2 3041 3185 -87 720 173 47 0 chr9 34432106 34432233 -83430394 - FLAM_C SINE Alu 0 133 1 215 302 62 120 chr9 34432233 34432313 -83430314 + L2 LINE L2 3185 3268 -4 308 346 118 7 chr9 34432439 34432592 -83430035 - MIR SINE MIR -73 189 20 816 127 42 0 chr9 34432916 34433034 -83429593 + FLAM_C SINE Alu 1 123 -10 23 0 0 0 chr9 34433034 34433057 -83429570 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr9 34433453 34433477 -83429150 + AT_rich Low_complexity Low_complexity 1 24 0 934 137 8 0 chr9 34433486 34433617 -83429010 - FLAM_C SINE Alu -1 132 1 240 35 0 0 chr9 34433879 34433908 -83428719 + (CA)n Simple_repeat Simple_repeat 2 30 0 558 259 78 35 chr9 34434758 34434990 -83427637 + MIR SINE MIR 19 260 -2 739 275 17 30 chr9 34435518 34435751 -83426876 - MIR SINE MIR -31 231 2 661 202 228 54 chr9 34435841 34436386 -83426241 + LTR50 LTR ERVL 6 784 -11 338 195 29 12 chr9 34436404 34436488 -83426139 - MIR3 SINE MIR -45 163 73 362 347 42 6 chr9 34436593 34436760 -83425867 - MIR SINE MIR -87 175 3 230 245 23 0 chr9 34437729 34437843 -83424784 - L2 LINE L2 -5 3308 3214 288 283 106 18 chr9 34437965 34438078 -83424549 + MIR SINE MIR 19 141 -67 2443 90 3 0 chr9 34438233 34438545 -83424082 + AluSp SINE Alu 1 313 0 435 312 133 14 chr9 34438705 34438984 -83423643 - L3 LINE CR1 -3 1574 1263 236 153 306 47 chr9 34439659 34439744 -83422883 - MIR SINE MIR 0 262 156 379 241 65 37 chr9 34439973 34440081 -83422546 - MIR SINE MIR -59 149 39 279 270 101 0 chr9 34440425 34440514 -83422113 + MER113 DNA MER1_type? 3 100 -421 2131 116 0 7 chr9 34440522 34440823 -83421804 - AluSq SINE Alu -14 299 1 252 272 65 22 chr9 34440988 34441080 -83421547 - L3 LINE CR1 -58 1519 1424 243 61 0 0 chr9 34441172 34441205 -83421422 + (T)n Simple_repeat Simple_repeat 1 33 0 506 271 117 14 chr9 34441221 34441433 -83421194 + MIR SINE MIR 19 251 -11 2185 103 0 3 chr9 34441853 34442139 -83420488 + AluSx SINE Alu 1 286 -22 423 0 0 0 chr9 34442139 34442186 -83420441 + (CATA)n Simple_repeat Simple_repeat 2 48 0 225 0 0 0 chr9 34442942 34442967 -83419660 + (A)n Simple_repeat Simple_repeat 1 25 0 2017 140 7 0 chr9 34443333 34443625 -83419002 - AluJo SINE Alu -14 298 5 679 191 70 0 chr9 34443661 34443776 -83418851 - FLAM_C SINE Alu -18 125 3 2851 130 23 2 chr9 34443954 34444385 -83418242 + MER44D DNA MER2_type 3 497 -108 479 170 138 0 chr9 34444492 34444586 -83418041 + MER44D DNA MER2_type 499 605 0 411 299 39 16 chr9 34445294 34445421 -83417206 + MIR SINE MIR 84 213 -49 435 199 26 0 chr9 34445427 34445532 -83417095 + MIR3 SINE MIR 69 177 -31 400 309 49 10 chr9 34446657 34446840 -83415787 - MIR SINE MIR -65 143 3 389 273 25 0 chr9 34446921 34447042 -83415585 - L3 LINE CR1 -252 1325 1202 24 32 0 0 chr9 34447226 34447257 -83415370 + AT_rich Low_complexity Low_complexity 1 31 0 248 222 333 19 chr9 34448886 34448994 -83413633 - L2 LINE L2 -8 3264 3123 189 270 16 16 chr9 34449639 34449702 -83412925 - L3b LINE CR1 -214 1369 1307 260 264 0 0 chr9 34450585 34450638 -83411989 + (TG)n Simple_repeat Simple_repeat 1 53 0 329 248 108 25 chr9 34450729 34450886 -83411741 + L1ME4a LINE L1 5935 6104 -17 499 245 123 0 chr9 34452771 34452926 -83409701 - MER117 DNA MER1_type -22 175 2 417 177 0 0 chr9 34454298 34454377 -83408250 + (TA)n Simple_repeat Simple_repeat 2 80 0 293 200 0 0 chr9 34454382 34454442 -83408185 - L1MC4 LINE L1 -1339 6703 6644 1377 198 8 30 chr9 34454454 34454722 -83407905 + AluJo SINE Alu 5 266 -46 420 193 0 72 chr9 34454724 34454807 -83407820 + AluJo/FRAM SINE Alu 208 284 -28 634 248 149 72 chr9 34454829 34455458 -83407169 - Charlie7 DNA MER1_type -3 2609 1932 1445 153 27 8 chr9 34455459 34455901 -83406726 + L1PA16 LINE L1 4598 5030 -1136 1471 209 7 16 chr9 34455901 34456208 -83406419 + AluJo SINE Alu 6 309 -3 1445 153 27 8 chr9 34456208 34457122 -83405505 + L1PA16 LINE L1 5030 6158 -8 228 35 0 0 chr9 34457122 34457151 -83405476 + (CATA)n Simple_repeat Simple_repeat 2 30 0 1966 197 154 33 chr9 34457180 34457502 -83405125 - Charlie7 DNA MER1_type -653 1959 1677 6825 91 17 8 chr9 34457502 34459231 -83403396 - L1PA15 LINE L1 -6 6159 4405 1966 197 154 33 chr9 34459231 34459572 -83403055 - Charlie7 DNA MER1_type -935 1677 1216 2614 61 0 0 chr9 34459626 34459937 -83402690 + AluY SINE Alu 1 311 0 265 111 32 79 chr9 34460483 34460546 -83402081 - MER52-int LTR ERV1 -887 6204 6145 246 304 80 0 chr9 34462471 34462596 -83400031 + L1ME4a LINE L1 5691 5825 -296 200 333 24 0 chr9 34463274 34463442 -83399185 + (CATATA)n Simple_repeat Simple_repeat 3 174 0 2264 113 3 0 chr9 34463508 34463819 -83398808 + AluSx SINE Alu 1 312 0 203 156 0 0 chr9 34464062 34464094 -83398533 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 4987 161 35 15 chr9 34464217 34465027 -83397600 + LTR1B LTR ERV1 1 826 0 328 248 40 10 chr9 34465090 34465191 -83397436 + L1ME4a LINE L1 6018 6121 0 2223 174 18 8 chr9 34465776 34466162 -83396465 - MLT1B LTR MaLR 0 390 1 209 344 0 16 chr9 34467280 34467344 -83395283 - L2 LINE L2 -13 3300 3238 1914 183 14 6 chr9 34468089 34468438 -83394189 + Tigger6b DNA MER2_type 1 352 -731 1547 152 4 4 chr9 34468430 34468693 -83393934 + Tigger6b DNA MER2_type 377 639 -958 * 4255 151 172 22 chr9 34468693 34469598 -83393029 - pTR5 LTR ERV1 -11 2427 175 1247 214 48 7 chr9 34469598 34469887 -83392740 + Tigger6b DNA MER2_type 626 926 -671 903 188 17 0 chr9 34469886 34470062 -83392565 + Tigger6b DNA MER2_type 1076 1254 -343 * 933 175 52 47 chr9 34470063 34470274 -83392353 + L1MB8 LINE L1 5822 6033 -145 766 266 44 50 chr9 34470623 34470984 -83391643 + L1M4 LINE L1 3223 3581 -2565 1707 158 7 4 chr9 34471103 34471375 -83391252 + AluJo SINE Alu 1 273 -39 22 0 0 0 chr9 34471426 34471448 -83391179 + AT_rich Low_complexity Low_complexity 1 22 0 3259 32 3 0 chr9 34471915 34472334 -83390293 + L1PA3 LINE L1 5756 6175 0 892 159 0 0 chr9 34472979 34473111 -83389516 + AluSq/x SINE Alu 1 132 -181 2216 107 0 3 chr9 34473113 34473402 -83389225 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr9 34473406 34473428 -83389199 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 371 127 0 0 chr9 34473449 34473504 -83389123 + Alu SINE Alu 243 297 -3 264 130 0 0 chr9 34473561 34473607 -83389020 + (CA)n Simple_repeat Simple_repeat 2 47 0 346 332 84 16 chr9 34474168 34474358 -83388269 + L2 LINE L2 2544 2746 -568 333 325 53 35 chr9 34474373 34474542 -83388085 + MER5A DNA MER1_type 15 186 -3 839 155 36 27 chr9 34474997 34475138 -83387489 - MLT2B1 LTR ERVL -56 456 318 675 99 0 0 chr9 34475138 34475239 -83387388 + (CA)n Simple_repeat Simple_repeat 2 102 0 839 155 36 27 chr9 34475239 34475267 -83387360 - MLT2B1 LTR ERVL -194 318 172 1579 277 55 57 chr9 34475407 34475532 -83387095 + L2 LINE L2 2207 2331 -983 1803 179 0 13 chr9 34475532 34475839 -83386788 - AluJb SINE Alu -9 303 1 1579 277 55 57 chr9 34475839 34476481 -83386146 + L2 LINE L2 2331 2972 -342 299 246 0 0 chr9 34476493 34476562 -83386065 - L2 LINE L2 -929 2385 2317 929 136 7 26 chr9 34476567 34476721 -83385906 + AluJb SINE Alu 1 151 -161 510 272 211 4 chr9 34476724 34476989 -83385638 + L2 LINE L2 2994 3313 0 547 243 168 9 chr9 34479128 34479342 -83383285 - MIR SINE MIR -14 248 1 353 144 58 23 chr9 34479835 34480008 -83382619 + (CA)n Simple_repeat Simple_repeat 1 179 0 189 0 0 0 chr9 34480206 34480227 -83382400 + (A)n Simple_repeat Simple_repeat 1 21 0 1397 143 63 0 chr9 34480681 34480919 -83381708 + L1MD3 LINE L1 7730 7982 -13 1239 177 116 14 chr9 34481024 34481301 -83381326 + MER61A LTR ERV1 1 305 -38 1810 122 0 19 chr9 34481404 34481577 -83381050 - AluSx SINE Alu -7 305 137 2202 98 3 32 chr9 34481577 34481892 -83380735 - AluSx SINE Alu -6 306 1 1810 122 0 19 chr9 34481892 34481980 -83380647 - AluSx SINE Alu -175 137 49 2758 131 21 59 chr9 34481980 34482243 -83380384 + MER6A DNA MER2_type 113 384 -481 2455 84 3 0 chr9 34482243 34482552 -83380075 - AluSg SINE Alu 0 310 1 2758 131 21 59 chr9 34482552 34482724 -83379903 + MER6A DNA MER2_type 384 529 -336 4509 141 0 6 chr9 34482724 34483403 -83379224 + L1PA16 LINE L1 5488 6162 -4 2758 131 21 59 chr9 34483403 34483478 -83379149 + MER6A DNA MER2_type 529 605 0 1743 139 18 0 chr9 34483549 34483823 -83378804 + L1MB2 LINE L1 5703 5981 -202 3781 162 51 23 chr9 34483824 34484569 -83378058 - LTR1B LTR ERV1 0 785 1 1071 126 55 11 chr9 34484569 34484751 -83377876 + L1MB2 LINE L1 5979 6168 -3 280 227 52 65 chr9 34484873 34484942 -83377685 - L1ME4a LINE L1 -4 6117 6049 2361 115 0 0 chr9 34484942 34485254 -83377373 + AluSx SINE Alu 1 312 0 280 227 52 65 chr9 34485254 34485338 -83377289 - L1ME4a LINE L1 -72 6049 5966 2175 111 7 3 chr9 34485433 34485713 -83376914 + AluSq SINE Alu 1 284 -29 193 40 0 0 chr9 34485713 34485738 -83376889 + (CAA)n Simple_repeat Simple_repeat 1 180 0 2175 111 7 3 chr9 34485738 34485755 -83376872 + AluSq SINE Alu 284 299 -14 218 347 0 32 chr9 34485759 34485854 -83376773 - MIR3 SINE MIR -7 201 110 422 254 25 33 chr9 34485961 34486083 -83376544 + MIR SINE MIR 2 122 -140 1493 226 93 64 chr9 34486293 34486916 -83375711 - MER50 LTR ERV1 -84 650 10 921 142 36 91 chr9 34488037 34488280 -83374347 + L1MD3 LINE L1 6208 6344 0 189 0 0 0 chr9 34488755 34488776 -83373851 + (A)n Simple_repeat Simple_repeat 1 21 0 2202 88 0 39 chr9 34489647 34489782 -83372845 + AluSp SINE Alu 1 140 -173 2749 32 0 0 chr9 34489782 34490093 -83372534 + AluY SINE Alu 1 311 0 2202 88 0 39 chr9 34490093 34490262 -83372365 + AluSp SINE Alu 140 293 -20 893 159 8 0 chr9 34490382 34490514 -83372113 - FLAM_C SINE Alu 0 133 1 336 291 68 35 chr9 34491612 34491980 -83370647 + HAL1b LINE L1 69 448 -900 2093 120 3 3 chr9 34492251 34492543 -83370084 - AluJb SINE Alu -20 292 1 1892 157 20 81 chr9 34492874 34493098 -83369529 - MLT1A2 LTR MaLR -3 371 179 2141 90 4 4 chr9 34493098 34493404 -83369223 - AluSx SINE Alu 0 311 6 1892 157 20 81 chr9 34493404 34493573 -83369054 - MLT1A2 LTR MaLR -195 179 1 1034 181 0 81 chr9 34494545 34494766 -83367861 + AluJo SINE Alu 85 287 -25 390 321 65 48 chr9 34495271 34495688 -83366939 + L1M4 LINE L1 4067 4490 -1656 670 215 112 22 chr9 34496167 34496390 -83366237 - MLT1J1 LTR MaLR -146 300 58 2005 129 0 0 chr9 34496898 34497177 -83365450 + AluJb SINE Alu 23 301 -11 382 142 46 3 chr9 34497344 34497562 -83365065 + AluJb SINE Alu 1 297 -5 586 221 16 25 chr9 34497884 34498006 -83364621 + FLAM_A SINE Alu 1 121 -12 22 0 0 0 chr9 34498008 34498030 -83364597 + AT_rich Low_complexity Low_complexity 1 22 0 227 306 51 20 chr9 34498672 34498770 -83363857 - MLT1H LTR MaLR -14 535 435 477 297 78 14 chr9 34498855 34499074 -83363553 - MLT1H LTR MaLR -290 259 27 198 71 0 0 chr9 34499609 34499637 -83362990 + (TG)n Simple_repeat Simple_repeat 2 29 0 2431 113 26 37 chr9 34499763 34500142 -83362485 - THE1C LTR MaLR 0 375 1 230 244 35 23 chr9 34500246 34500332 -83362295 + LTR67 LTR ERVL 458 544 -13 333 0 0 0 chr9 34500731 34500768 -83361859 + (CA)n Simple_repeat Simple_repeat 2 38 0 301 258 33 77 chr9 34500810 34500961 -83361666 + L1M4 LINE L1 4532 4675 -1471 2092 109 34 0 chr9 34500961 34501255 -83361372 - AluSg SINE Alu -6 304 1 301 258 33 77 chr9 34501255 34501285 -83361342 + L1M4 LINE L1 4675 4705 -1441 714 163 41 24 chr9 34502044 34502167 -83360460 + FLAM_A SINE Alu 3 127 -6 299 268 92 49 chr9 34502168 34502474 -83360153 + L1M4 LINE L1 4737 5055 -1091 17314 51 7 0 chr9 34502693 34505512 -83357115 + L1PA6 LINE L1 3316 6144 -10 347 185 25 0 chr9 34505514 34505595 -83357032 + (TATATG)n Simple_repeat Simple_repeat 6 88 0 241 174 0 0 chr9 34505595 34505641 -83356986 - LTR66 LTR ERVL -171 439 394 1191 144 0 0 chr9 34505641 34505814 -83356813 + AluSq SINE Alu 127 299 -14 752 199 53 66 chr9 34505966 34506249 -83356378 + L1M4 LINE L1 4890 5166 -980 846 158 0 0 chr9 34506432 34506559 -83356068 + FRAM SINE Alu 44 170 -6 28 61 0 0 chr9 34506744 34506793 -83355834 + AT_rich Low_complexity Low_complexity 1 49 0 1846 140 13 36 chr9 34506793 34507100 -83355527 - AluJb SINE Alu -12 300 1 916 135 15 15 chr9 34507327 34507460 -83355167 + FLAM_C SINE Alu 1 133 0 344 268 73 0 chr9 34507950 34508073 -83354554 + L1M4 LINE L1 3794 3925 -2221 21 36 0 0 chr9 34508334 34508362 -83354265 + AT_rich Low_complexity Low_complexity 1 28 0 483 18 0 0 chr9 34508863 34508919 -83353708 + (CA)n Simple_repeat Simple_repeat 2 57 0 2050 117 0 36 chr9 34509566 34509875 -83352752 - AluSx SINE Alu -14 298 1 21 36 0 0 chr9 34510392 34510420 -83352207 + AT_rich Low_complexity Low_complexity 1 28 0 197 339 55 18 chr9 34510578 34510687 -83351940 - L2 LINE L2 -2 3270 3158 27 0 0 0 chr9 34511408 34511435 -83351192 + AT_rich Low_complexity Low_complexity 1 27 0 1223 114 0 0 chr9 34511435 34511593 -83351034 + AluSq SINE Alu 1 158 -155 203 331 66 33 chr9 34512437 34512455 -83350172 + MER5A DNA MER1_type 1 22 -167 304 318 69 23 chr9 34512455 34512628 -83349999 - MER5A DNA MER1_type -2 187 7 780 220 140 9 chr9 34512731 34512945 -83349682 - MIR SINE MIR -12 250 9 2548 64 0 13 chr9 34512951 34513262 -83349365 - AluY SINE Alu -2 309 3 331 272 29 44 chr9 34513761 34513897 -83348730 + MIR SINE MIR 128 261 -1 747 315 63 47 chr9 34516273 34516873 -83345754 - L2 LINE L2 0 3313 2702 2115 125 13 3 chr9 34516977 34517282 -83345345 + AluSx SINE Alu 3 310 -2 2209 72 4 4 chr9 34517669 34517946 -83344681 + L1PA6 LINE L1 5878 6154 0 1483 192 17 23 chr9 34518762 34519064 -83343563 + AluJo SINE Alu 3 302 0 2200 132 0 0 chr9 34519106 34519409 -83343218 + AluSx SINE Alu 3 305 -7 2941 145 63 10 chr9 34519591 34520095 -83342532 - MER39 LTR ERV1 -86 621 91 240 333 75 0 chr9 34520114 34520234 -83342393 + MIR SINE MIR 110 238 -24 3375 106 0 19 chr9 34520593 34521063 -83341564 - L1PA15 LINE L1 -12 6153 5693 679 277 229 24 chr9 34522095 34522423 -83340204 - L2 LINE L2 -582 2732 2338 5392 199 71 45 chr9 34522430 34522971 -83339656 + L1MC4a LINE L1 6104 6630 -1178 183 80 0 0 chr9 34522971 34522996 -83339631 + (TG)n Simple_repeat Simple_repeat 1 25 0 5392 199 71 45 chr9 34522996 34523964 -83338663 + L1MC4a LINE L1 6630 7652 -156 26 0 0 0 chr9 34524411 34524437 -83338190 + AT_rich Low_complexity Low_complexity 1 26 0 1337 151 46 5 chr9 34524489 34524707 -83337920 - AluJo SINE Alu -1 311 85 1279 220 48 36 chr9 34524715 34525089 -83337538 + L1ME2 LINE L1 5795 6164 0 2043 119 27 70 chr9 34525212 34525583 -83337044 + L1MB3 LINE L1 5822 6176 -7 516 303 108 13 chr9 34526438 34526669 -83335958 - MIR SINE MIR -6 256 4 2414 69 0 3 chr9 34526882 34527170 -83335457 - AluSp SINE Alu -5 308 22 276 53 0 0 chr9 34527588 34527626 -83335001 + (A)n Simple_repeat Simple_repeat 1 38 0 1870 107 68 11 chr9 34527772 34528052 -83334575 - AluSx SINE Alu -16 296 1 2246 100 7 0 chr9 34528057 34528356 -83334271 - AluSp SINE Alu -12 301 1 2190 115 0 16 chr9 34528357 34528669 -83333958 - AluSx SINE Alu -5 307 1 1561 112 0 30 chr9 34530036 34530269 -83332358 + AluJb SINE Alu 85 310 -2 477 274 78 17 chr9 34531534 34531713 -83330914 + MIR SINE MIR 68 257 -5 2162 109 0 0 chr9 34531716 34532028 -83330599 - AluSx SINE Alu 0 312 1 323 330 16 113 chr9 34532042 34532351 -83330276 - L2 LINE L2 -33 3239 2961 297 240 41 107 chr9 34532418 34532476 -83330151 - MER91B DNA MER1_type -60 130 83 2300 105 3 0 chr9 34532476 34532781 -83329846 - AluSp SINE Alu -7 306 1 297 240 41 107 chr9 34532781 34532843 -83329784 - MER91B DNA MER1_type -107 83 18 1983 135 17 0 chr9 34533059 34533348 -83329279 + AluSg SINE Alu 3 296 -14 291 405 33 8 chr9 34534969 34535090 -83327537 + L2 LINE L2 3145 3268 -4 2354 94 7 0 chr9 34535275 34535574 -83327053 - AluSx SINE Alu -11 301 1 728 205 146 6 chr9 34535695 34535866 -83326761 + MER3 DNA MER1_type 2 196 -13 1503 138 17 0 chr9 34536053 34536284 -83326343 + Tigger1 DNA MER2_type 3 237 -2181 5757 118 38 8 chr9 34536289 34537161 -83325466 + Tigger1 DNA MER2_type 997 1894 -524 2566 53 0 3 chr9 34537161 34537464 -83325163 + AluY SINE Alu 1 302 -9 1909 124 79 16 chr9 34537464 34537779 -83324848 + Tigger1 DNA MER2_type 2084 2418 0 1537 155 34 10 chr9 34537834 34538125 -83324502 - AluJo SINE Alu -14 298 1 512 279 234 5 chr9 34538450 34538651 -83323976 - MIR SINE MIR -11 251 5 204 336 81 27 chr9 34538697 34538777 -83323850 - L2 LINE L2 -32 3281 3207 767 183 16 0 chr9 34538777 34538903 -83323724 + FLAM_A SINE Alu 1 128 -5 204 336 81 27 chr9 34538903 34538971 -83323656 - L2 LINE L2 -106 3207 3125 253 326 188 0 chr9 34539487 34539631 -83322996 - L2 LINE L2 -635 2679 2509 479 322 75 17 chr9 34539631 34539870 -83322757 - L2 LINE L2 -911 2403 2151 288 239 11 68 chr9 34539876 34539964 -83322663 + L1ME3A LINE L1 6027 6109 -61 3834 45 8 6 chr9 34539965 34540435 -83322192 + L1PA7 LINE L1 5682 6152 -2 277 254 0 0 chr9 34540582 34540641 -83321986 + L2 LINE L2 3191 3249 -64 362 321 111 39 chr9 34540690 34540970 -83321657 - L2 LINE L2 -1317 1997 1698 2190 45 69 3 chr9 34541249 34541537 -83321090 + AluY SINE Alu 1 307 -4 855 293 60 0 chr9 34541585 34541817 -83320810 + MIR SINE MIR 1 246 -16 2094 87 7 3 chr9 34541900 34542188 -83320439 + AluSx SINE Alu 1 289 -23 536 278 60 91 chr9 34543822 34544569 -83318058 - L1M4 LINE L1 -1711 4435 3712 4181 158 68 28 chr9 34544578 34545361 -83317266 - MER21B LTR ERV1 -7 856 43 574 193 9 18 chr9 34545372 34545486 -83317141 + L2 LINE L2 3198 3310 -3 248 0 31 0 chr9 34545595 34545627 -83317000 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2082 102 7 3 chr9 34545629 34545924 -83316703 - AluSx SINE Alu -16 296 1 484 225 210 22 chr9 34545971 34546109 -83316518 + MER5A DNA MER1_type 26 189 0 1085 293 68 93 chr9 34546123 34546351 -83316276 - L1M4 LINE L1 -2569 3577 3345 1795 148 24 10 chr9 34546351 34546648 -83315979 - AluJo SINE Alu -11 301 1 1085 293 68 93 chr9 34546648 34546697 -83315930 - L1M4 LINE L1 -2801 3345 3296 3612 179 40 56 chr9 34546697 34547681 -83314946 + LTR5 LTR ERVK 2 969 0 1085 293 68 93 chr9 34547681 34547806 -83314821 - L1M4 LINE L1 -2850 3296 3169 2239 85 10 0 chr9 34547806 34548101 -83314526 - AluSg SINE Alu -12 298 1 1085 293 68 93 chr9 34548101 34548501 -83314126 - L1M4 LINE L1 -2977 3169 2760 2547 128 43 31 chr9 34548501 34548544 -83314083 - MSTA LTR MaLR 0 428 387 2073 80 3 65 chr9 34548544 34548869 -83313758 + AluSq SINE Alu 1 305 -8 2547 128 43 31 chr9 34548869 34549248 -83313379 - MSTA LTR MaLR -41 387 1 1085 293 68 93 chr9 34549248 34549297 -83313330 - L1M4 LINE L1 -3386 2760 2746 1581 178 0 53 chr9 34549297 34549618 -83313009 + AluJo SINE Alu 1 304 -8 1085 293 68 93 chr9 34549618 34549694 -83312933 - L1M4 LINE L1 -3400 2746 2670 3457 161 7 2 chr9 34549826 34550378 -83312249 - MER41D LTR ERV1 -2 555 1 24 0 0 0 chr9 34550774 34550798 -83311829 + AT_rich Low_complexity Low_complexity 1 24 0 424 307 129 0 chr9 34551673 34551836 -83310791 - MIR SINE MIR -1 261 78 10339 124 15 22 chr9 34554180 34555807 -83306820 + L1P LINE L1 11 1625 -4521 1756 143 84 53 chr9 34555925 34556247 -83306380 + MER1B DNA MER1_type 4 335 -2 471 278 91 78 chr9 34556408 34556717 -83305910 + MLT1J LTR MaLR 3 315 -196 1463 106 0 0 chr9 34556851 34557049 -83305578 - AluSq SINE Alu -8 305 108 882 90 0 0 chr9 34557064 34557175 -83305452 + AluSq/x SINE Alu 12 122 -190 515 199 106 0 chr9 34557178 34557329 -83305298 - MER20B DNA MER1_type -30 753 587 196 230 18 124 chr9 34557920 34558033 -83304594 - L2 LINE L2 -592 2722 2622 1995 116 7 3 chr9 34558034 34558318 -83304309 + AluSx SINE Alu 1 285 -27 25 0 0 0 chr9 34558318 34558343 -83304284 + AT_rich Low_complexity Low_complexity 1 25 0 2779 49 0 6 chr9 34558445 34558791 -83303836 + LTR14A LTR ERVK 1 344 0 403 230 0 0 chr9 34559285 34559359 -83303268 - L2 LINE L2 -1 3312 3239 21 0 0 0 chr9 34559434 34559455 -83303172 + AT_rich Low_complexity Low_complexity 1 21 0 1534 186 17 3 chr9 34559517 34559812 -83302815 - AluJo SINE Alu -13 299 1 2814 138 40 0 chr9 34559832 34560303 -83302324 - L1MA8 LINE L1 -5 6286 5797 480 61 0 0 chr9 34560304 34560370 -83302257 - MER2 DNA MER2_type -159 186 121 806 150 0 8 chr9 34560371 34560504 -83302123 + AluJb SINE Alu 1 132 -180 833 181 0 8 chr9 34560504 34560637 -83301990 - MER2 DNA MER2_type -213 132 1 1672 138 3 0 chr9 34560640 34560929 -83301698 - L1MA8 LINE L1 -771 5375 5086 1589 159 29 7 chr9 34560930 34561206 -83301421 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr9 34561209 34561229 -83301398 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2302 60 3 7 chr9 34561399 34561700 -83300927 - AluSp SINE Alu -13 300 1 2836 129 29 21 chr9 34562850 34563331 -83299296 + MER31A LTR ERV1 1 485 0 4207 158 61 54 chr9 34563915 34563952 -83298675 - L1MB3 LINE L1 -118 6065 6030 1430 111 202 8 chr9 34563952 34564195 -83298432 + AluSg SINE Alu 1 290 -20 4207 158 61 54 chr9 34564195 34564541 -83298086 - L1MB3 LINE L1 -153 6030 5688 2969 123 7 7 chr9 34564541 34564979 -83297648 + L1PB3 LINE L1 5708 6147 -7 4207 158 61 54 chr9 34564979 34565184 -83297443 - L1MB3 LINE L1 -495 5688 5486 2182 87 0 29 chr9 34565184 34565493 -83297134 - AluSg SINE Alu -10 300 1 4207 158 61 54 chr9 34565493 34565978 -83296649 - L1MB3 LINE L1 -697 5486 4987 1906 148 10 6 chr9 34565978 34566289 -83296338 - AluJo SINE Alu 0 312 1 4207 158 61 54 chr9 34566289 34566609 -83296018 - L1MB3 LINE L1 -1196 4987 4671 234 0 0 0 chr9 34566621 34566647 -83295980 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 738 171 7 29 chr9 34566696 34566836 -83295791 + FLAM_C SINE Alu 2 138 -5 445 177 242 81 chr9 34566843 34567029 -83295598 + MER102a DNA MER1_type 115 330 0 266 33 0 0 chr9 34567201 34567231 -83295396 - MLT2D LTR ERVL 0 414 385 2469 68 0 0 chr9 34567274 34567583 -83295044 + AluY SINE Alu 1 309 -2 470 322 72 66 chr9 34567593 34568051 -83294576 - L2 LINE L2 -261 3052 2578 963 248 32 8 chr9 34568347 34568593 -83294034 + LTR16C LTR ERVL 236 487 -4 33 25 0 0 chr9 34568765 34568805 -83293822 + AT_rich Low_complexity Low_complexity 1 40 0 818 153 0 23 chr9 34568964 34569095 -83293532 - FLAM_C SINE Alu -4 129 2 2271 82 0 0 chr9 34569107 34569400 -83293227 - AluSx SINE Alu -12 300 8 337 250 125 91 chr9 34570007 34570069 -83292558 + L2 LINE L2 2636 2694 -620 1548 189 0 26 chr9 34570069 34570371 -83292256 + AluJo SINE Alu 18 311 -1 337 250 125 91 chr9 34570371 34570572 -83292055 + L2 LINE L2 2694 2908 -406 762 225 156 36 chr9 34570901 34570994 -83291633 - L2 LINE L2 0 3313 3233 2281 85 3 0 chr9 34570994 34571289 -83291338 + AluSq SINE Alu 2 297 -16 762 225 156 36 chr9 34571289 34571415 -83291212 - L2 LINE L2 -80 3233 3124 2099 123 0 3 chr9 34571415 34571717 -83290910 + AluSx SINE Alu 1 301 -11 762 225 156 36 chr9 34571717 34571803 -83290824 - L2 LINE L2 -189 3124 2970 315 293 24 49 chr9 34571793 34571844 -83290783 - L2 LINE L2 -546 2768 2717 * 2316 68 3 0 chr9 34571844 34572140 -83290487 - AluSg SINE Alu -13 297 1 315 293 24 49 chr9 34572140 34572211 -83290416 - L2 LINE L2 -597 2717 2649 387 282 94 0 chr9 34572233 34572350 -83290277 - L2 LINE L2 0 3272 3145 750 276 160 48 chr9 34572900 34573380 -83289247 + MLT1G1 LTR MaLR 1 595 0 410 323 30 8 chr9 34573508 34573641 -83288986 + L2 LINE L2 3134 3269 -3 824 238 168 5 chr9 34573705 34573919 -83288708 - MIR SINE MIR -2 260 12 2239 74 10 3 chr9 34574080 34574378 -83288249 + AluY SINE Alu 1 300 -11 360 222 9 74 chr9 34575194 34575302 -83287325 - L2 LINE L2 -3 3269 3169 2266 91 3 0 chr9 34575915 34576213 -83286414 - AluSg SINE Alu -11 299 1 211 310 14 14 chr9 34576647 34576718 -83285909 - L3 LINE CR1 -11 1566 1496 313 339 27 0 chr9 34577387 34577499 -83285128 + L2 LINE L2 3150 3264 -8 * 403 232 40 10 chr9 34577477 34577576 -83285051 - L2 LINE L2 -4 3309 3208 1140 220 90 43 chr9 34577596 34577834 -83284793 - MER21B LTR ERV1 -54 809 583 1662 179 123 0 chr9 34577834 34578159 -83284468 - MLT1A1 LTR MaLR 0 365 1 1140 220 90 43 chr9 34578159 34578488 -83284139 - MER21B LTR ERV1 -280 583 148 359 235 15 0 chr9 34578589 34578657 -83283970 - MER21B LTR ERV1 -773 90 22 1963 118 9 19 chr9 34578658 34578973 -83283654 - AluSx SINE Alu 0 312 1 1351 87 11 0 chr9 34579535 34579720 -83282907 + AluSq SINE Alu 117 303 -10 1944 115 3 3 chr9 34579732 34580019 -83282608 + AluSg SINE Alu 3 289 -21 1812 162 44 3 chr9 34580024 34580364 -83282263 + L1MC3 LINE L1 7432 7785 0 23 0 0 0 chr9 34580468 34580491 -83282136 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr9 34580503 34580562 -83282065 + AT_rich Low_complexity Low_complexity 1 59 0 201 307 130 59 chr9 34581359 34581613 -83281014 + L2 LINE L2 2360 2631 -683 241 258 0 16 chr9 34581685 34581747 -83280880 + MIR SINE MIR 168 228 -34 2239 76 7 3 chr9 34581980 34582281 -83280346 + AluSp SINE Alu 1 302 -11 355 213 12 88 chr9 34582361 34582521 -83280106 + L1MC/D LINE L1 4465 4612 -1534 786 163 23 0 chr9 34582674 34582803 -83279824 + FLAM_C SINE Alu 2 133 -10 717 189 15 15 chr9 34582978 34583110 -83279517 + FLAM_A SINE Alu 2 133 0 495 266 225 15 chr9 34583390 34583785 -83278842 + L1MC/D LINE L1 5313 5790 -2018 1565 163 46 0 chr9 34583972 34584255 -83278372 - AluJb SINE Alu -10 302 7 253 302 7 86 chr9 34584294 34584354 -83278273 + L2 LINE L2 3136 3199 -73 1918 110 7 20 chr9 34584354 34584655 -83277972 - AluSx SINE Alu -15 297 1 253 302 7 86 chr9 34584655 34584733 -83277894 + L2 LINE L2 3199 3263 -9 196 356 194 25 chr9 34584997 34585275 -83277352 + L2 LINE L2 2830 3154 -118 685 192 15 0 chr9 34585314 34585444 -83277183 - AluSq/x SINE Alu -180 133 2 276 100 0 25 chr9 34587849 34587889 -83274738 + U2 snRNA snRNA 1 39 -149 2231 101 3 22 chr9 34588272 34588590 -83274037 - AluSp SINE Alu -1 312 1 1989 99 17 10 chr9 34588705 34588999 -83273628 + AluSq SINE Alu 1 296 -17 1327 99 0 11 chr9 34589001 34589183 -83273444 + AluSg/x SINE Alu 126 305 -5 736 213 109 11 chr9 34590244 34590418 -83272209 - MER3 DNA MER1_type -17 192 2 186 173 77 19 chr9 34590781 34590833 -83271794 + MIR SINE MIR 84 138 -124 216 0 0 0 chr9 34591133 34591157 -83271470 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2201 89 3 10 chr9 34592354 34592647 -83269980 - AluSq SINE Alu -22 291 1 2019 141 13 10 chr9 34592677 34592981 -83269646 - AluSx SINE Alu -7 305 1 770 176 101 70 chr9 34593633 34593832 -83268795 + MER6B DNA MER2_type 2 206 -4 475 271 81 27 chr9 34593962 34594220 -83268407 + L1MC5 LINE L1 7642 7913 -48 1484 149 69 29 chr9 34594672 34594947 -83267680 + AluJb SINE Alu 4 289 -23 25 31 0 0 chr9 34594955 34594987 -83267640 + AT_rich Low_complexity Low_complexity 1 32 0 348 315 24 39 chr9 34595182 34595309 -83267318 - MIR SINE MIR -131 131 7 344 130 19 0 chr9 34596121 34596175 -83266452 + FLAM_A SINE Alu 14 68 -64 607 202 105 0 chr9 34596175 34596289 -83266338 + AluJo/FRAM SINE Alu 156 281 -31 21 0 0 0 chr9 34596289 34596310 -83266317 + AT_rich Low_complexity Low_complexity 1 21 0 1508 126 146 0 chr9 34596376 34596622 -83266005 + AluSq SINE Alu 11 292 -21 2201 114 3 0 chr9 34596712 34597019 -83265608 - AluSq SINE Alu -5 308 1 1891 123 4 4 chr9 34597233 34597494 -83265133 - AluSx SINE Alu -51 261 1 887 125 0 28 chr9 34598439 34598583 -83264044 + FLAM_C SINE Alu 1 140 -3 1982 156 0 0 chr9 34598662 34598951 -83263676 + AluJb SINE Alu 13 301 -11 1928 122 36 33 chr9 34599249 34599553 -83263074 - AluSx SINE Alu -7 305 1 204 40 0 0 chr9 34600787 34600812 -83261815 + (TA)n Simple_repeat Simple_repeat 2 26 0 1941 120 23 32 chr9 34601650 34601959 -83260668 + AluSx SINE Alu 1 306 -6 1797 178 159 70 chr9 34602021 34602222 -83260405 + L1MB4 LINE L1 5406 5588 -592 1349 182 134 19 chr9 34602222 34602529 -83260098 - MER2 DNA MER2_type -1 343 2 1797 178 159 70 chr9 34602529 34602556 -83260071 + L1MB4 LINE L1 5588 5611 -569 2253 108 7 0 chr9 34602556 34602861 -83259766 + AluSq SINE Alu 1 307 -6 1797 178 159 70 chr9 34602861 34603343 -83259284 + L1MB4 LINE L1 5611 6180 0 556 14 116 0 chr9 34603377 34603446 -83259181 + MADE1 DNA Mariner 4 80 0 605 160 208 7 chr9 34603834 34603978 -83258649 - MER5B DNA MER1_type -3 175 3 2234 100 3 0 chr9 34604084 34604383 -83258244 - AluSg SINE Alu -10 300 1 357 150 33 0 chr9 34604679 34604739 -83257888 - MER5A DNA MER1_type -60 129 68 189 0 0 0 chr9 34605243 34605264 -83257363 + (A)n Simple_repeat Simple_repeat 1 21 0 2250 111 0 0 chr9 34606813 34607111 -83255516 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 34607834 34607855 -83254772 + (A)n Simple_repeat Simple_repeat 1 21 0 2303 87 3 10 chr9 34607859 34608158 -83254469 + AluSx SINE Alu 1 297 -15 2077 112 0 14 chr9 34608826 34609136 -83253491 + AluSx SINE Alu 1 306 0 346 173 68 0 chr9 34609138 34609207 -83253420 + MLT1J2 LTR MaLR 366 440 -6 675 172 0 63 chr9 34609947 34610099 -83252528 + L1MD2 LINE L1 5855 5998 -173 5587 178 60 16 chr9 34610104 34610902 -83251725 + L1MC1 LINE L1 4362 5123 -1210 1742 171 55 0 chr9 34610902 34611018 -83251609 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr9 34611018 34611042 -83251585 + (CA)n Simple_repeat Simple_repeat 1 24 0 1742 171 55 0 chr9 34611042 34611218 -83251409 + AluJo SINE Alu 109 309 -3 5587 178 60 16 chr9 34611218 34611799 -83250828 + L1MC1 LINE L1 5123 5677 -656 2170 103 0 0 chr9 34611799 34612090 -83250537 + AluSg SINE Alu 1 291 -19 2841 13 0 0 chr9 34612093 34612401 -83250226 + AluY SINE Alu 1 308 -3 5587 178 60 16 chr9 34612401 34612905 -83249722 + L1MC1 LINE L1 5678 6333 0 1168 207 55 114 chr9 34612893 34613026 -83249601 + L1MD2 LINE L1 5930 6069 -290 * 1988 65 146 0 chr9 34613026 34613287 -83249340 + AluSp SINE Alu 1 299 -4 1168 207 55 114 chr9 34613287 34613608 -83249019 + L1MD2 LINE L1 6069 6357 -2 1222 216 76 30 chr9 34614710 34615039 -83247588 + MER2 DNA MER2_type 1 344 0 823 165 0 0 chr9 34615256 34615383 -83247244 + FLAM_C SINE Alu 1 127 -16 668 187 14 72 chr9 34615430 34615569 -83247058 - FLAM_A SINE Alu -2 131 1 355 282 73 9 chr9 34615587 34615697 -83246930 - MER5B DNA MER1_type -61 117 1 181 317 0 33 chr9 34615943 34616003 -83246624 + L2 LINE L2 3238 3295 -18 192 125 0 0 chr9 34616407 34616439 -83246188 + (TA)n Simple_repeat Simple_repeat 2 33 0 900 189 0 0 chr9 34616447 34616595 -83246032 - FRAM SINE Alu -29 147 1 264 286 134 0 chr9 34617585 34617704 -83244923 + L1ME4a LINE L1 5857 5991 -130 204 258 86 54 chr9 34617767 34617860 -83244767 - MER5A DNA MER1_type -90 99 4 221 347 112 31 chr9 34618587 34618685 -83243942 + MIR3 SINE MIR 5 110 -98 21 71 0 0 chr9 34619145 34619187 -83243440 + AT_rich Low_complexity Low_complexity 1 42 0 272 177 71 88 chr9 34619425 34619538 -83243089 - L1ME4a LINE L1 -1 6120 6010 1895 181 0 0 chr9 34619570 34619868 -83242759 - AluSx SINE Alu -12 300 3 357 171 72 155 chr9 34620148 34620341 -83242286 + L1MC4a LINE L1 5257 5433 -2375 274 211 227 13 chr9 34620349 34620501 -83242126 + L1MC4a LINE L1 5725 5813 -308 985 87 0 0 chr9 34620717 34620843 -83241784 + AluSp/q SINE Alu 157 282 -31 1614 95 0 27 chr9 34620943 34621164 -83241463 - AluSq SINE Alu -98 215 1 1211 201 43 50 chr9 34621268 34621571 -83241056 - AluJo SINE Alu -11 301 1 38 0 0 0 chr9 34622819 34622857 -83239770 + AT_rich Low_complexity Low_complexity 1 38 0 209 254 0 70 chr9 34623215 34623286 -83239341 + L2 LINE L2 3207 3272 0 274 242 11 22 chr9 34623692 34623783 -83238844 - L1ME4a LINE L1 -62 6059 5970 792 249 91 56 chr9 34623791 34624165 -83238462 - L1ME4a LINE L1 -178 5943 5557 218 265 220 65 chr9 34624225 34624332 -83238295 + MIR SINE MIR 26 115 -147 2254 96 7 3 chr9 34624332 34624624 -83238003 + AluSx SINE Alu 1 293 -19 218 265 220 65 chr9 34624624 34624716 -83237911 + MIR SINE MIR 115 256 -6 2251 141 3 32 chr9 34624771 34625118 -83237509 + MER1B DNA MER1_type 1 337 0 292 216 144 46 chr9 34625125 34625278 -83237349 - L1ME4a LINE L1 -2336 5472 5305 818 146 46 15 chr9 34625359 34625489 -83237138 - FRAM SINE Alu -18 158 25 2247 114 0 7 chr9 34625988 34626295 -83236332 - AluSx SINE Alu -7 305 1 413 288 153 14 chr9 34626303 34626525 -83236102 + L2 LINE L2 2151 2403 -911 906 284 76 76 chr9 34626638 34627336 -83235291 + HAL1 LINE L1 26 723 -1784 531 269 117 43 chr9 34627568 34627660 -83234967 + HAL1 LINE L1 1638 1722 -785 430 149 246 79 chr9 34627660 34627774 -83234853 + FLAM_C SINE Alu 1 133 0 2473 71 0 0 chr9 34627778 34628073 -83234554 + AluSc SINE Alu 1 295 -14 531 269 117 43 chr9 34628073 34628232 -83234395 + HAL1 LINE L1 1724 1913 -594 549 278 102 43 chr9 34628274 34628648 -83233979 + HAL1 LINE L1 1989 2384 -123 2352 96 0 0 chr9 34628749 34629051 -83233576 - AluSq SINE Alu -11 302 1 339 291 196 17 chr9 34629259 34629438 -83233189 - MIR SINE MIR 0 262 52 322 323 81 0 chr9 34629438 34629562 -83233065 - MER94 DNA DNA 0 134 1 205 154 51 0 chr9 34629569 34629608 -83233019 - MIR SINE MIR -220 42 2 1701 194 14 0 chr9 34629763 34630057 -83232570 - AluJo SINE Alu -14 298 1 6667 97 43 23 chr9 34630719 34630771 -83231856 + L1MA3 LINE L1 5218 5268 -1037 1923 142 0 3 chr9 34630771 34631085 -83231542 + AluSq SINE Alu 1 313 0 6667 97 43 23 chr9 34631085 34631096 -83231531 + L1MA3 LINE L1 5268 5277 -1028 1812 146 4 0 chr9 34631096 34631364 -83231263 + AluSx SINE Alu 1 269 -43 210 37 0 0 chr9 34631371 34631398 -83231229 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6667 97 43 23 chr9 34631398 34632406 -83230221 + L1MA3 LINE L1 5282 6298 -7 1947 143 3 10 chr9 34633308 34633602 -83229025 + AluSx SINE Alu 5 296 -16 2253 100 10 0 chr9 34633804 34634103 -83228524 + AluSx SINE Alu 3 304 -8 293 303 54 76 chr9 34634197 34634382 -83228245 + MER21B LTR ERV1 17 197 -666 1533 195 3 3 chr9 34634382 34634664 -83227963 + AluJb SINE Alu 16 297 -15 184 301 84 24 chr9 34635218 34635301 -83227326 - MIR SINE MIR -59 149 62 626 198 16 16 chr9 34635434 34635555 -83227072 + FLAM_C SINE Alu 2 122 -21 1515 201 3 38 chr9 34635569 34635883 -83226744 + AluJb SINE Alu 1 303 -9 382 252 244 0 chr9 34635883 34636006 -83226621 - MIR SINE MIR -92 170 18 1781 160 13 13 chr9 34636025 34636325 -83226302 - AluJb SINE Alu -12 300 1 2456 54 0 3 chr9 34636347 34636641 -83225986 + AluY SINE Alu 1 293 -18 2437 52 16 3 chr9 34638119 34638424 -83224203 + AluSp SINE Alu 1 309 -4 1573 97 13 13 chr9 34638536 34638762 -83223865 + AluSq SINE Alu 75 300 -13 318 18 36 36 chr9 34638784 34638840 -83223787 + (GAAAA)n Simple_repeat Simple_repeat 4 59 0 2147 92 0 14 chr9 34638863 34639156 -83223471 - AluSg SINE Alu -21 289 1 821 193 0 0 chr9 34639315 34639465 -83223162 - AluJb SINE Alu -23 289 140 1874 103 4 4 chr9 34639623 34639894 -83222733 + AluSx SINE Alu 1 271 -41 203 0 0 36 chr9 34639903 34639931 -83222696 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 758 203 92 57 chr9 34640452 34640642 -83221985 + MER20B DNA MER1_type 488 693 -90 1877 107 4 0 chr9 34640642 34640905 -83221722 - AluSx SINE Alu -14 298 35 758 203 92 57 chr9 34640905 34640995 -83221632 + MER20B DNA MER1_type 693 778 -5 808 196 5 15 chr9 34641027 34641226 -83221401 + HAL1b LINE L1 927 1123 -225 1723 155 23 10 chr9 34641236 34641540 -83221087 + AluJo SINE Alu 1 308 -4 2021 110 0 10 chr9 34641548 34641839 -83220788 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr9 34641839 34641863 -83220764 + AT_rich Low_complexity Low_complexity 1 24 0 356 214 57 0 chr9 34642992 34643062 -83219565 + MIR SINE MIR 174 247 -15 761 164 0 0 chr9 34643066 34643222 -83219405 - FLAM_C SINE Alu 0 157 2 2336 58 0 7 chr9 34644676 34644968 -83217659 + L1PA5 LINE L1 5865 6154 0 1894 111 0 0 chr9 34645265 34645526 -83217101 + AluSq SINE Alu 1 261 -52 787 252 70 42 chr9 34645681 34645967 -83216660 + L2 LINE L2 1654 1947 -1367 2356 73 3 0 chr9 34646221 34646521 -83216106 + AluY SINE Alu 1 301 -10 1218 110 6 0 chr9 34646521 34646694 -83215933 + AluSq SINE Alu 134 307 -6 41932 66 7 2 chr9 34646706 34652820 -83209807 + L1PA5 LINE L1 11 6154 0 404 302 130 23 chr9 34652938 34653292 -83209335 + L1MC5 LINE L1 850 1219 -5197 560 241 13 44 chr9 34653294 34653452 -83209175 + Tigger1 DNA MER2_type 1 153 -2265 296 187 0 27 chr9 34653476 34653551 -83209076 + CT-rich Low_complexity Low_complexity 6 78 0 975 151 0 0 chr9 34653553 34653705 -83208922 - FRAM SINE Alu -18 158 7 1147 152 30 5 chr9 34653710 34653908 -83208719 + Tigger1 DNA MER2_type 2216 2418 0 834 244 55 61 chr9 34653933 34654695 -83207932 + L1MC5 LINE L1 1283 2048 -6193 2242 70 7 10 chr9 34654695 34654993 -83207634 - AluSq SINE Alu -16 297 1 834 244 55 61 chr9 34654993 34655177 -83207450 + L1MC5 LINE L1 2048 8206 -35 225 191 0 48 chr9 34655163 34655226 -83207401 + L1MEd LINE L1 1819 1878 -4729 * 2458 41 0 0 chr9 34655384 34655678 -83206949 + AluY SINE Alu 1 294 -17 352 299 83 22 chr9 34655747 34656061 -83206566 + L1MEd LINE L1 2071 2403 -4204 567 289 69 26 chr9 34656074 34656306 -83206321 + L2 LINE L2 1662 1903 -1411 298 247 59 61 chr9 34656321 34656346 -83206281 + L1MEd LINE L1 2394 2418 -4008 2230 90 3 3 chr9 34656346 34656646 -83205981 + AluSg SINE Alu 1 300 -10 298 247 59 61 chr9 34656646 34656805 -83205822 + L1MEd LINE L1 2418 2543 -3883 331 229 12 48 chr9 34656910 34656993 -83205634 + L1MEd LINE L1 1996 2075 -4351 327 187 0 13 chr9 34657010 34657085 -83205542 - L1MB7 LINE L1 -52 6132 6059 2069 118 0 3 chr9 34657112 34657417 -83205210 - AluSx SINE Alu -8 304 1 397 272 4 52 chr9 34657435 34657603 -83205024 + L1MEd LINE L1 2709 2863 -3563 2404 80 0 0 chr9 34657603 34657914 -83204713 + AluY SINE Alu 1 311 0 397 272 4 52 chr9 34657914 34657995 -83204632 + L1MEd LINE L1 2863 2946 -3480 665 176 0 9 chr9 34658011 34658119 -83204508 + MER44D DNA MER2_type 3 379 -230 885 95 0 0 chr9 34658120 34658236 -83204391 - AluSq/x SINE Alu -187 126 11 823 217 6 18 chr9 34658246 34658412 -83204215 - FRAM SINE Alu -14 162 1 2039 235 106 91 chr9 34658475 34658874 -83203753 + L1M4 LINE L1 3657 4048 -2098 2280 84 0 7 chr9 34658874 34659172 -83203455 - AluSp SINE Alu -17 296 1 2039 235 106 91 chr9 34659172 34659361 -83203266 + L1M4 LINE L1 4048 4233 -1913 2137 116 0 0 chr9 34659361 34659662 -83202965 - AluSx SINE Alu -11 301 1 2039 235 106 91 chr9 34659662 34659862 -83202765 + L1M4 LINE L1 4233 4428 -1718 1746 174 0 3 chr9 34659862 34660167 -83202460 + AluJb SINE Alu 1 304 -8 2039 235 106 91 chr9 34660167 34660647 -83201980 + L1M4 LINE L1 4428 4947 -1199 1080 102 0 0 chr9 34660726 34660873 -83201754 - AluSq/x SINE Alu -165 147 1 197 269 0 39 chr9 34660876 34660928 -83201699 - MIR SINE MIR -196 66 17 4152 122 3 35 chr9 34661738 34662247 -83200380 - MER41B LTR ERV1 0 635 150 2217 92 14 0 chr9 34662247 34662542 -83200085 - AluSq SINE Alu -14 299 1 4152 122 3 35 chr9 34662542 34662688 -83199939 - MER41B LTR ERV1 -485 150 1 343 175 155 19 chr9 34664067 34664170 -83198457 + MIR SINE MIR 23 139 -69 578 307 94 15 chr9 34665177 34665473 -83197154 - L1MC4a LINE L1 -297 5824 5533 246 143 0 20 chr9 34666097 34666146 -83196481 - L1MB3 LINE L1 0 6183 6136 2000 100 13 27 chr9 34666148 34666449 -83196178 - AluSx SINE Alu -15 297 1 2161 87 7 7 chr9 34666466 34666765 -83195862 - AluSp SINE Alu -14 299 1 3273 177 41 34 chr9 34666831 34667576 -83195051 - L1MB3 LINE L1 -58 6125 5415 207 171 0 0 chr9 34667995 34668030 -83194597 + GA-rich Low_complexity Low_complexity 1 35 0 194 254 0 14 chr9 34668145 34668216 -83194411 - MIR SINE MIR -132 130 61 577 179 24 41 chr9 34669428 34669551 -83193076 - MIR SINE MIR -10 252 132 530 153 31 10 chr9 34669555 34669653 -83192974 + FLAM_A SINE Alu 42 141 -1 886 149 0 0 chr9 34669658 34669792 -83192835 + FLAM_C SINE Alu 1 134 -9 455 202 91 0 chr9 34669802 34669901 -83192726 - MIR SINE MIR -120 142 35 343 265 10 0 chr9 34669919 34670021 -83192606 + (TG)n Simple_repeat Simple_repeat 2 104 0 458 243 9 19 chr9 34670122 34670229 -83192398 + MER21B LTR ERV1 1 106 -757 4022 188 46 45 chr9 34670287 34670852 -83191775 + MER21B LTR ERV1 19 587 -276 482 261 25 0 chr9 34670852 34670971 -83191656 + FLAM_A SINE Alu 1 122 -11 4022 188 46 45 chr9 34670971 34671246 -83191381 + MER21B LTR ERV1 587 860 -3 355 254 122 6 chr9 34671714 34671863 -83190764 - MIR SINE MIR -5 257 90 264 77 0 0 chr9 34672578 34672617 -83190010 + (A)n Simple_repeat Simple_repeat 1 39 0 271 314 42 0 chr9 34676807 34676925 -83185702 + L1MC5 LINE L1 7805 7927 -34 2054 85 29 0 chr9 34677558 34677839 -83184788 - AluSc SINE Alu -10 299 11 2193 100 7 7 chr9 34677849 34678150 -83184477 - AluSx SINE Alu -11 301 1 1590 152 22 51 chr9 34679708 34680023 -83182604 + AluJo SINE Alu 4 309 -3 2250 103 0 0 chr9 34680188 34680489 -83182138 - AluSx SINE Alu -11 301 1 1801 159 3 0 chr9 34680762 34681058 -83181569 + AluJo SINE Alu 1 297 -15 1730 171 3 0 chr9 34681230 34681534 -83181093 + AluJb SINE Alu 1 305 -7 648 208 47 57 chr9 34682090 34682301 -83180326 + L1MC/D LINE L1 5612 5822 -511 1669 134 14 38 chr9 34682684 34682974 -83179653 - AluSx SINE Alu -6 306 24 389 236 130 24 chr9 34682981 34683104 -83179523 + L2 LINE L2 3167 3302 -11 198 0 0 0 chr9 34683110 34683132 -83179495 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 1474 152 53 8 chr9 34683564 34683828 -83178799 + AluJb SINE Alu 1 276 -36 210 37 0 0 chr9 34683835 34683862 -83178765 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1033 68 8 0 chr9 34684190 34684322 -83178305 + AluSq/x SINE Alu 1 133 -179 2251 89 3 0 chr9 34684325 34684629 -83177998 + AluSx SINE Alu 2 306 -6 294 267 58 0 chr9 34685700 34685786 -83176841 + MIR SINE MIR 56 146 -116 459 146 49 12 chr9 34685882 34685964 -83176663 + AluJb SINE Alu 203 287 -25 217 200 25 0 chr9 34686808 34686848 -83175779 - L2 LINE L2 -665 2649 2609 693 209 0 22 chr9 34687772 34687906 -83174721 - FLAM_A SINE Alu -2 131 1 2271 57 0 7 chr9 34688267 34688590 -83174037 - AluY SINE Alu 0 321 1 829 280 13 59 chr9 34688769 34689158 -83173469 + L1ME4a LINE L1 5561 5931 -190 209 289 0 0 chr9 34689366 34689411 -83173216 + (TGG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr9 34689424 34689444 -83173183 + (TC)n Simple_repeat Simple_repeat 2 21 0 467 248 38 15 chr9 34692341 34692474 -83170153 - MIR SINE MIR -126 136 1 327 281 97 0 chr9 34692525 34692639 -83169988 + MIR SINE MIR 21 145 -117 258 156 0 0 chr9 34692901 34692946 -83169681 + (TG)n Simple_repeat Simple_repeat 1 45 0 224 291 12 12 chr9 34693409 34693495 -83169132 + A-rich Low_complexity Low_complexity 1 86 0 261 287 128 0 chr9 34693726 34693820 -83168807 - MER103 DNA DNA -48 118 13 207 0 0 0 chr9 34694216 34694239 -83168388 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2380 81 0 0 chr9 34694241 34694525 -83168102 - AluSx SINE Alu -23 289 6 498 331 60 36 chr9 34694530 34694811 -83167816 - L3 LINE CR1 -1041 536 249 226 208 0 38 chr9 34696939 34696992 -83165635 - MER81 DNA DNA -62 52 2 258 301 0 106 chr9 34697090 34697203 -83165424 + MIR SINE MIR 21 121 -87 399 41 0 0 chr9 34697218 34697267 -83165360 + (TG)n Simple_repeat Simple_repeat 1 49 0 506 279 65 0 chr9 34697844 34697998 -83164629 - MER103 DNA DNA -1 165 2 228 360 110 15 chr9 34698904 34699040 -83163587 - MER5A DNA MER1_type -1 188 40 404 236 24 97 chr9 34699541 34699706 -83162921 + MIR3 SINE MIR 23 175 -33 183 263 177 70 chr9 34699955 34700271 -83162356 + L2 LINE L2 2142 2491 -823 222 211 0 0 chr9 34700271 34700323 -83162304 + (CA)n Simple_repeat Simple_repeat 2 53 0 203 260 96 87 chr9 34700465 34700569 -83162058 - L2 LINE L2 -9 3263 3159 29 0 0 0 chr9 34701805 34701834 -83160793 + AT_rich Low_complexity Low_complexity 1 29 0 197 313 50 0 chr9 34702300 34702380 -83160247 + L2 LINE L2 2979 3062 -210 2058 107 16 55 chr9 34702550 34702860 -83159767 + AluSx SINE Alu 1 298 -14 2478 89 0 0 chr9 34703305 34703608 -83159019 - AluSc SINE Alu -6 303 1 800 172 146 0 chr9 34703938 34704089 -83158538 - FRAM SINE Alu -6 170 1 2379 117 0 0 chr9 34704190 34704499 -83158128 + AluSx SINE Alu 1 309 -3 506 281 26 42 chr9 34704822 34705014 -83157613 - MER5A DNA MER1_type 0 189 1 1668 152 23 43 chr9 34705209 34705511 -83157116 - AluJo SINE Alu -16 296 1 2272 97 0 19 chr9 34705555 34705865 -83156762 - AluSg SINE Alu -6 304 1 2332 114 0 22 chr9 34708011 34708328 -83154299 - AluSx SINE Alu -2 310 1 188 321 0 0 chr9 34708470 34708526 -83154101 + L2 LINE L2 3258 3313 0 2006 138 20 0 chr9 34708570 34708874 -83153753 - AluSx SINE Alu -2 310 1 1457 185 8 20 chr9 34709119 34709373 -83153254 + AluJo SINE Alu 42 292 -20 668 282 48 40 chr9 34709377 34709760 -83152867 + L1ME1 LINE L1 5192 5585 -585 229 351 27 21 chr9 34709798 34709986 -83152641 + L1ME1 LINE L1 5678 5866 -304 3739 189 48 115 chr9 34709991 34710598 -83152029 + L1MC4 LINE L1 6760 7406 -636 2016 150 6 19 chr9 34710598 34710912 -83151715 - AluSx SINE Alu -2 310 1 3739 189 48 115 chr9 34710912 34711561 -83151066 + L1MC4 LINE L1 7406 8097 55 297 0 0 0 chr9 34711561 34711594 -83151033 + (CA)n Simple_repeat Simple_repeat 2 34 0 192 40 0 0 chr9 34711593 34711618 -83151009 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 3739 189 48 115 chr9 34711594 34711727 -83150900 + L1MC4 LINE L1 8096 8035 -7 23 0 0 0 chr9 34711728 34711751 -83150876 + AT_rich Low_complexity Low_complexity 1 23 0 941 238 57 5 chr9 34711807 34712074 -83150553 + L1ME1 LINE L1 5889 6147 -19 207 146 0 0 chr9 34712292 34712333 -83150294 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 207 318 127 16 chr9 34712866 34712992 -83149635 + MIR SINE MIR 117 256 -6 584 274 100 53 chr9 34713226 34713363 -83149264 + L1ME4a LINE L1 5027 5156 -990 2023 106 51 0 chr9 34713363 34713637 -83148990 + AluSx SINE Alu 1 288 -24 549 0 0 0 chr9 34713637 34713698 -83148929 + (CATAA)n Simple_repeat Simple_repeat 2 62 0 584 274 100 53 chr9 34713698 34713919 -83148708 + L1ME4a LINE L1 5155 5391 -755 2030 149 10 0 chr9 34713922 34714217 -83148410 + AluSx SINE Alu 1 298 -14 793 143 0 50 chr9 34714245 34714385 -83148242 + FLAM_A SINE Alu 1 133 0 410 264 135 5 chr9 34714386 34714594 -83148033 + L1ME4a LINE L1 5361 5595 -2213 3014 178 57 136 chr9 34714615 34715832 -83146795 + L1M4 LINE L1 3040 4160 -1986 1246 118 133 0 chr9 34716069 34716272 -83146355 - MER30 DNA MER1_type 0 230 1 453 313 18 37 chr9 34716440 34716603 -83146024 - MIR3 SINE MIR -15 193 34 2223 99 0 0 chr9 34717479 34717761 -83144866 - AluSx SINE Alu -30 282 1 454 83 0 62 chr9 34718391 34718487 -83144140 + (CA)n Simple_repeat Simple_repeat 2 91 0 343 316 30 18 chr9 34718593 34718761 -83143866 + L1ME LINE L1 5558 5727 -394 665 205 87 22 chr9 34719107 34719292 -83143335 - MIR SINE MIR 0 262 66 239 346 57 6 chr9 34719469 34719628 -83142999 - MIR3 SINE MIR -6 202 36 233 314 114 53 chr9 34721506 34721814 -83140813 + L1ME4a LINE L1 5630 5975 -146 2082 128 20 3 chr9 34721814 34722110 -83140517 + AluJb SINE Alu 3 303 -9 233 314 114 53 chr9 34722110 34722250 -83140377 + L1ME4a LINE L1 5975 6105 -16 225 0 0 0 chr9 34722349 34722374 -83140253 + (TC)n Simple_repeat Simple_repeat 2 26 0 209 194 0 0 chr9 34723592 34723628 -83138999 + GA-rich Low_complexity Low_complexity 2 37 0 246 342 83 8 chr9 34723680 34723800 -83138827 + L2 LINE L2 3126 3254 -18 2009 104 47 24 chr9 34726298 34726595 -83136032 - AluSx SINE Alu -8 304 1 252 341 65 8 chr9 34726622 34726745 -83135882 - MIR SINE MIR -70 192 63 245 203 176 68 chr9 34727454 34727602 -83135025 - MIR SINE MIR -13 249 86 21 0 0 0 chr9 34728546 34728567 -83134060 + GC_rich Low_complexity Low_complexity 1 21 0 263 194 29 80 chr9 34728659 34728834 -83133793 + (CGGGG)n Simple_repeat Simple_repeat 4 169 0 252 273 127 18 chr9 34729455 34729565 -83133062 - MIR SINE MIR -92 170 49 231 250 19 0 chr9 34729832 34729884 -83132743 - MIR SINE MIR -93 169 117 1704 269 166 16 chr9 34729922 34730846 -83131781 + L2 LINE L2 2003 3135 -178 2435 80 3 3 chr9 34730846 34731148 -83131479 - AluSq SINE Alu -11 302 1 1704 269 166 16 chr9 34731148 34731295 -83131332 + L2 LINE L2 3135 3259 -54 2518 70 0 3 chr9 34731296 34731597 -83131030 - AluY SINE Alu -11 300 1 182 293 17 0 chr9 34732383 34732441 -83130186 + L2 LINE L2 3225 3283 -30 807 264 174 62 chr9 34732444 34732881 -83129746 - MLT1G1 LTR MaLR 0 595 100 1766 199 0 0 chr9 34732881 34733182 -83129445 - AluJo SINE Alu -11 301 1 807 264 174 62 chr9 34733182 34733214 -83129413 - MLT1G1 LTR MaLR -495 100 73 366 223 25 41 chr9 34733388 34733509 -83129118 - LTR45 LTR ERV1 -9 516 398 724 160 109 0 chr9 34733981 34734100 -83128527 + FLAM_C SINE Alu 2 133 0 1548 221 72 47 chr9 34734427 34734449 -83128178 + L1MC4a LINE L1 6444 6464 -1344 2322 101 0 3 chr9 34734449 34734757 -83127870 + AluSx SINE Alu 1 307 -5 1548 221 72 47 chr9 34734757 34734919 -83127708 + L1MC4a LINE L1 6464 6620 -1188 360 0 0 0 chr9 34734919 34734959 -83127668 + (TG)n Simple_repeat Simple_repeat 2 41 0 1548 221 72 47 chr9 34734959 34735311 -83127316 + L1MC4a LINE L1 6620 6995 -813 375 155 68 29 chr9 34735349 34735452 -83127175 + L1MC4 LINE L1 7465 7571 -471 2252 109 0 0 chr9 34735696 34735980 -83126647 + AluSx SINE Alu 3 286 -26 2415 102 0 9 chr9 34736001 34736316 -83126311 + AluSx SINE Alu 1 312 0 279 0 0 0 chr9 34736318 34736349 -83126278 + (TA)n Simple_repeat Simple_repeat 1 31 0 1820 184 10 7 chr9 34736357 34736666 -83125961 + AluJo SINE Alu 1 310 -2 538 249 127 0 chr9 34736667 34736832 -83125795 + L1MC4 LINE L1 7701 7886 -156 1790 128 21 107 chr9 34736838 34737213 -83125414 + MER7A DNA MER2_type 6 346 0 1898 133 53 0 chr9 34737846 34738169 -83124458 + L1PA16 LINE L1 5807 6146 -20 1059 249 14 0 chr9 34738744 34738965 -83123662 + MER58A DNA MER1_type 1 224 0 928 265 124 43 chr9 34738994 34739314 -83123313 - MLT1G1 LTR MaLR -24 531 156 2076 141 0 7 chr9 34739314 34739619 -83123008 - AluJb SINE Alu -9 303 1 928 265 124 43 chr9 34739619 34739789 -83122838 - MLT1G1 LTR MaLR -399 156 1 253 212 91 40 chr9 34740155 34740254 -83122373 - MLT1I LTR MaLR -25 384 281 506 227 104 13 chr9 34740381 34740539 -83122088 - MLT1H LTR MaLR -235 174 29 1066 331 60 50 chr9 34740684 34740883 -83121744 - L3 LINE CR1 -7 1570 1374 1568 196 73 3 chr9 34740883 34741225 -83121402 + MER47A DNA MER2_type 1 366 0 1066 331 60 50 chr9 34741225 34741403 -83121224 - L3 LINE CR1 -203 1374 1199 850 144 8 0 chr9 34741403 34741528 -83121099 - FLAM_A SINE Alu -7 126 1 1066 331 60 50 chr9 34741528 34741748 -83120879 - L3 LINE CR1 -378 1199 966 212 321 60 36 chr9 34741754 34741838 -83120789 - L3 LINE CR1 -931 646 561 370 277 56 90 chr9 34741950 34742217 -83120410 - LTR67 LTR ERVL -297 260 3 368 306 67 50 chr9 34742243 34742423 -83120204 - L3 LINE CR1 -1052 525 343 1701 165 0 14 chr9 34742465 34742750 -83119877 + AluJo SINE Alu 1 281 -31 333 0 0 0 chr9 34742751 34742788 -83119839 + (CA)n Simple_repeat Simple_repeat 2 38 0 579 269 110 57 chr9 34742861 34743125 -83119502 + MLT1K LTR MaLR 40 317 -271 720 166 35 28 chr9 34743139 34743284 -83119343 - MLT1B LTR MaLR 0 390 245 552 142 28 75 chr9 34743323 34743429 -83119198 - AluJo SINE Alu -127 185 85 1338 186 66 30 chr9 34743433 34743766 -83118861 - MLT1C LTR MaLR -122 345 1 396 224 69 46 chr9 34744157 34744331 -83118296 - L1MC5 LINE L1 -35 7926 7749 1431 192 19 26 chr9 34744332 34744598 -83118029 + Tigger7 DNA MER2_type 1 264 -2223 4458 18 4 0 chr9 34744615 34745123 -83117504 + L1PA3 LINE L1 5646 6155 0 3127 62 2 5 chr9 34745123 34745508 -83117119 + L1PA7 LINE L1 5754 6153 -1 186 43 0 0 chr9 34745547 34745570 -83117057 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 315 0 0 0 chr9 34745581 34745616 -83117011 + (CA)n Simple_repeat Simple_repeat 2 36 0 525 165 10 21 chr9 34745616 34745713 -83116914 + Tigger7 DNA MER2_type 2392 2487 0 226 250 45 0 chr9 34745842 34745886 -83116741 - L2 LINE L2 -86 3186 3141 372 263 286 0 chr9 34745915 34746048 -83116579 - MER5A DNA MER1_type -10 179 9 288 205 14 14 chr9 34746394 34746465 -83116162 + MLT1K LTR MaLR 140 246 -342 1927 135 3 7 chr9 34746795 34747098 -83115529 + AluSx SINE Alu 1 302 -10 491 269 0 0 chr9 34747600 34747708 -83114919 - MER81 DNA DNA -6 108 1 236 235 204 68 chr9 34747876 34748008 -83114619 + MIR SINE MIR 36 185 -77 204 293 53 40 chr9 34750347 34750422 -83112205 - L2 LINE L2 -190 3082 3007 252 262 243 0 chr9 34750860 34750963 -83111664 + L2 LINE L2 3145 3272 0 776 162 7 37 chr9 34751311 34751447 -83111180 - FLAM_A SINE Alu -1 132 1 539 285 135 39 chr9 34751454 34751787 -83110840 - MLT1K LTR MaLR -14 574 210 324 177 102 129 chr9 34751901 34752048 -83110579 - MIR SINE MIR -56 206 64 2263 86 0 0 chr9 34752048 34752340 -83110287 - AluSx SINE Alu -20 292 1 352 313 89 36 chr9 34752705 34752929 -83109698 + L1ME LINE L1 5409 5644 -477 595 261 49 126 chr9 34752937 34753094 -83109533 + L1M4 LINE L1 2197 2365 -3781 2340 67 10 22 chr9 34753094 34753408 -83109219 + AluSp SINE Alu 2 311 -2 595 261 49 126 chr9 34753408 34753703 -83108924 + L1M4 LINE L1 2365 2614 -3532 873 144 7 7 chr9 34753750 34753903 -83108724 + AluJb SINE Alu 1 153 -159 234 300 40 20 chr9 34754524 34754674 -83107953 + L1P LINE L1 4906 5058 -1088 739 192 23 0 chr9 34755149 34755279 -83107348 - FLAM_A SINE Alu 0 133 1 873 152 0 28 chr9 34755396 34755541 -83107086 + AluJb SINE Alu 157 297 -15 1900 94 3 76 chr9 34755570 34755721 -83106906 + AluSc SINE Alu 5 121 -188 2349 75 0 0 chr9 34755721 34756029 -83106598 + AluY SINE Alu 1 308 -3 1900 94 3 76 chr9 34756029 34756206 -83106421 + AluSc SINE Alu 121 309 0 1750 162 20 23 chr9 34756274 34756576 -83106051 + AluJo SINE Alu 1 301 -11 2736 138 115 29 chr9 34756581 34757101 -83105526 + MER34B LTR ERV1 1 565 0 1948 154 0 0 chr9 34757230 34757528 -83105099 + AluJo SINE Alu 1 298 -14 420 273 34 89 chr9 34757566 34757668 -83104959 + L1MEd LINE L1 943 1049 -1441 1733 117 95 0 chr9 34757668 34757941 -83104686 + AluSx SINE Alu 1 299 -13 420 273 34 89 chr9 34757941 34758248 -83104379 + L1MEd LINE L1 1049 1417 -1073 281 301 106 24 chr9 34758753 34758876 -83103751 + MIR3 SINE MIR 13 145 -63 2078 124 61 28 chr9 34759060 34759423 -83103204 + THE1C LTR MaLR 1 375 0 737 218 6 6 chr9 34759830 34759986 -83102641 - MER103 DNA DNA -9 157 2 323 360 124 0 chr9 34760034 34760259 -83102368 - L2 LINE L2 -1025 2289 2037 2313 187 63 33 chr9 34760277 34760327 -83102300 + MLT2B3 LTR ERVL 3 50 -504 2358 72 0 7 chr9 34760327 34760633 -83101994 + AluY SINE Alu 1 304 -7 2313 187 63 33 chr9 34760633 34761073 -83101554 + MLT2B3 LTR ERVL 50 508 -46 1463 154 14 7 chr9 34761083 34761346 -83101281 + MER49 LTR ERV1 1 262 -641 235 222 0 21 chr9 34761330 34761397 -83101230 + MER4D LTR ERV1 107 280 -592 * 1542 228 8 34 chr9 34761425 34761780 -83100847 + MER4D LTR ERV1 558 903 0 313 70 26 0 chr9 34761812 34761864 -83100763 + MLT2B3 LTR ERVL 464 554 0 324 294 183 16 chr9 34761951 34762077 -83100550 + MER5A DNA MER1_type 37 183 -6 752 226 144 82 chr9 34762526 34762663 -83099964 + MLT1J LTR MaLR 20 147 -364 1918 115 0 0 chr9 34762663 34762933 -83099694 + AluY SINE Alu 29 298 -13 752 226 144 82 chr9 34762933 34763114 -83099513 + MLT1J LTR MaLR 147 358 -153 1682 163 10 10 chr9 34763115 34763409 -83099218 + AluJb SINE Alu 1 294 -18 468 307 68 0 chr9 34763430 34763606 -83099021 - L2 LINE L2 -1351 1963 1776 342 356 43 16 chr9 34765074 34765141 -83097486 + MIR SINE MIR 20 84 -178 634 202 0 23 chr9 34765141 34765270 -83097357 - FLAM_A SINE Alu -7 126 1 342 356 43 16 chr9 34765270 34765390 -83097237 + MIR SINE MIR 84 212 -50 425 226 169 8 chr9 34765567 34765691 -83096936 + MER5A DNA MER1_type 39 182 -7 508 241 138 106 chr9 34766039 34766437 -83096190 - MLT1J LTR MaLR 0 511 101 2182 79 31 0 chr9 34766939 34767230 -83095397 - AluY SINE Alu -11 300 1 1827 171 0 7 chr9 34767283 34767587 -83095040 + AluJo SINE Alu 1 302 -10 429 299 45 8 chr9 34767630 34767764 -83094863 + L2 LINE L2 3175 3313 0 209 318 0 56 chr9 34768715 34768781 -83093846 - MIR SINE MIR -65 143 84 2369 155 23 3 chr9 34768781 34769169 -83093458 - MSTD LTR MaLR 0 396 1 209 318 0 56 chr9 34769169 34769209 -83093418 - MIR SINE MIR -124 84 43 544 282 77 28 chr9 34769286 34769410 -83093217 + MLT1J2 LTR MaLR 63 179 -271 2133 107 0 7 chr9 34769410 34769709 -83092918 + AluSx SINE Alu 1 297 -15 544 282 77 28 chr9 34769709 34769937 -83092690 + MLT1J2 LTR MaLR 179 450 0 381 309 140 22 chr9 34770039 34770217 -83092410 + MIR SINE MIR 3 201 -61 734 248 149 14 chr9 34770220 34770502 -83092125 + MER20B DNA MER1_type 1 320 -463 592 237 0 23 chr9 34770507 34770638 -83091989 - FLAM_A SINE Alu -5 128 1 998 217 170 59 chr9 34770842 34771265 -83091362 - MLT1D LTR MaLR -1 389 3 1306 70 0 0 chr9 34771272 34771428 -83091199 - MSTA LTR MaLR 0 428 273 487 175 12 0 chr9 34771428 34771508 -83091119 - AluJb SINE Alu -189 123 43 909 226 81 23 chr9 34771536 34771845 -83090782 - MER20B DNA MER1_type -2 781 455 1834 86 25 0 chr9 34771846 34772090 -83090537 - MSTA LTR MaLR -178 250 1 253 243 0 27 chr9 34772243 34772317 -83090310 - LTR33 LTR ERVL -440 81 10 1212 226 86 44 chr9 34772322 34772588 -83090039 + MER20B DNA MER1_type 334 626 -157 2247 110 3 0 chr9 34772588 34772898 -83089729 - AluSx SINE Alu -1 311 1 1212 226 86 44 chr9 34772898 34773061 -83089566 + MER20B DNA MER1_type 626 781 -2 235 239 0 30 chr9 34773568 34773635 -83088992 + GA-rich Low_complexity Low_complexity 6 70 0 978 133 10 77 chr9 34774094 34774218 -83088409 - MER5A DNA MER1_type -6 183 75 2258 87 0 3 chr9 34774218 34774517 -83088110 + AluSx SINE Alu 1 298 -14 978 133 10 77 chr9 34774517 34774588 -83088039 - MER5A DNA MER1_type -114 75 1 503 260 44 132 chr9 34774635 34774822 -83087805 - L2 LINE L2 0 3313 3111 1524 174 35 3 chr9 34774822 34775104 -83087523 + AluJo SINE Alu 1 291 -21 2006 80 0 8 chr9 34775113 34775375 -83087252 + AluSg SINE Alu 36 295 -15 503 260 44 132 chr9 34775375 34775496 -83087131 - L2 LINE L2 -210 3103 3023 212 352 0 0 chr9 34775672 34775777 -83086850 + (TGAA)n Simple_repeat Simple_repeat 3 107 0 360 345 84 25 chr9 34776774 34777058 -83085569 + L1ME4a LINE L1 5329 5629 -492 317 272 0 0 chr9 34777175 34777256 -83085371 + L1ME4a LINE L1 5686 5766 -2042 1723 175 17 0 chr9 34777282 34777573 -83085054 - AluJb SINE Alu -16 296 1 2080 228 78 72 chr9 34778293 34778977 -83083650 + LTR41 LTR ERVL 1 688 -85 1789 118 21 7 chr9 34779013 34779300 -83083327 - AluSx SINE Alu -21 291 1 780 291 58 26 chr9 34779573 34780041 -83082586 + LTR33 LTR ERVL 1 521 0 2165 100 3 3 chr9 34780158 34780467 -83082160 + AluSg SINE Alu 2 310 0 729 211 113 24 chr9 34780732 34780979 -83081648 + L1ME4a LINE L1 5847 6115 -6 1589 186 19 13 chr9 34780979 34781286 -83081341 - AluJo SINE Alu -3 309 1 2128 121 0 6 chr9 34781395 34781709 -83080918 - AluSx SINE Alu 0 312 1 313 252 269 0 chr9 34783314 34783433 -83079194 - MER5A DNA MER1_type 0 189 39 1470 103 0 10 chr9 34783759 34783963 -83078664 - AluSg/x SINE Alu -26 286 85 305 288 112 0 chr9 34784101 34784226 -83078401 + MER103 DNA DNA 25 163 -3 192 48 0 129 chr9 34784438 34784500 -83078127 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 1963 88 62 0 chr9 34784519 34784793 -83077834 - AluSx SINE Alu -17 295 5 1230 189 14 5 chr9 34785186 34785403 -83077224 + MER20 DNA MER1_type 1 219 0 1116 187 30 32 chr9 34785713 34785760 -83076867 - L1MA4A LINE L1 -12 6156 6110 502 174 43 17 chr9 34785760 34785875 -83076752 - L1MA4A LINE L1 -4 6299 6182 1116 187 30 32 chr9 34785875 34786133 -83076494 - L1MA4A LINE L1 -58 6110 5862 271 323 24 60 chr9 34786211 34786277 -83076350 + L1ME LINE L1 5629 5696 -466 2169 89 7 26 chr9 34786277 34786581 -83076046 - AluSp SINE Alu -15 298 1 271 323 24 60 chr9 34786581 34786762 -83075865 + L1ME LINE L1 5696 5867 -295 817 176 0 0 chr9 34786770 34786901 -83075726 + FLAM_C SINE Alu 3 133 -10 2094 237 61 23 chr9 34787162 34787773 -83074854 - L1ME2 LINE L1 -1 6163 5530 738 190 171 19 chr9 34787778 34787983 -83074644 + L1ME2 LINE L1 5288 5523 -651 315 0 0 0 chr9 34787996 34788031 -83074596 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 351 0 0 chr9 34788433 34788490 -83074137 + polypyrimidine Low_complexity Low_complexity 2 58 0 251 254 130 47 chr9 34788490 34788535 -83074092 - MIR SINE MIR -4 258 218 2106 110 0 13 chr9 34788535 34788835 -83073792 - AluSx SINE Alu -16 296 1 251 254 130 47 chr9 34788835 34788895 -83073732 - MIR SINE MIR -44 218 164 1472 168 36 4 chr9 34788895 34789169 -83073458 - AluJo SINE Alu -25 287 5 251 254 130 47 chr9 34789169 34789231 -83073396 - MIR SINE MIR -98 164 76 1447 216 160 14 chr9 34789241 34789672 -83072955 - MLT1D LTR MaLR -11 494 1 184 358 12 25 chr9 34789672 34789753 -83072874 - MIR3 SINE MIR -126 82 3 443 293 9 61 chr9 34790513 34790663 -83071964 + MIR SINE MIR 14 154 -66 360 272 18 18 chr9 34791195 34791309 -83071318 + MLT1K LTR MaLR 151 264 -324 241 213 53 40 chr9 34791613 34791688 -83070939 + MER91 DNA MER1_type 65 140 0 306 191 135 11 chr9 34791689 34791778 -83070849 - MIR SINE MIR -69 139 40 1617 98 0 0 chr9 34791984 34792187 -83070440 + AluSg/x SINE Alu 96 298 -12 1782 148 52 14 chr9 34792361 34792652 -83069975 + AluJb SINE Alu 1 302 -10 1290 269 73 19 chr9 34792745 34793210 -83069417 + LTR16C LTR ERVL 2 491 0 229 253 25 25 chr9 34793211 34793290 -83069337 + LTR67 LTR ERVL 469 547 -10 489 297 123 59 chr9 34794115 34794749 -83067878 - L2 LINE L2 -261 3011 2337 372 258 92 50 chr9 34794850 34794970 -83067657 + L2 LINE L2 3141 3265 -7 199 300 0 50 chr9 34795881 34795961 -83066666 - MIR SINE MIR -73 135 60 896 298 172 7 chr9 34795980 34796386 -83066241 + L2 LINE L2 2836 3308 -5 1961 155 0 3 chr9 34796713 34797003 -83065624 - AluJb SINE Alu -23 289 1 289 319 37 30 chr9 34797003 34797127 -83065500 - L2 LINE L2 -14 3299 3172 372 339 46 27 chr9 34797342 34797714 -83064913 - L2 LINE L2 -418 2896 2518 619 344 82 30 chr9 34797817 34798256 -83064371 + L2 LINE L2 2811 3272 0 282 298 217 12 chr9 34798821 34798982 -83063645 + L3 LINE CR1 1344 1537 -40 1920 126 22 0 chr9 34798983 34799183 -83063444 - AluSx SINE Alu 0 333 123 333 0 0 0 chr9 34799183 34799220 -83063407 + (TG)n Simple_repeat Simple_repeat 2 38 0 1920 126 22 0 chr9 34799220 34799346 -83063281 - AluSx SINE Alu -210 123 1 288 0 0 0 chr9 34799350 34799382 -83063245 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1933 101 7 22 chr9 34799389 34799666 -83062961 - AluSx SINE Alu -39 273 1 21 0 0 0 chr9 34799954 34799975 -83062652 + AT_rich Low_complexity Low_complexity 1 21 0 906 121 8 0 chr9 34799975 34800099 -83062528 - FLAM_C SINE Alu -7 126 2 238 189 19 0 chr9 34800133 34800186 -83062441 + L1MC4 LINE L1 7987 8040 -2 339 287 10 10 chr9 34800208 34800309 -83062318 - MER5B DNA MER1_type -77 101 1 2178 104 7 3 chr9 34800489 34800786 -83061841 + AluSg SINE Alu 1 298 -12 245 328 88 19 chr9 34800987 34801166 -83061461 - MIR3 SINE MIR -52 156 1 279 231 25 32 chr9 34801169 34801260 -83061367 + CT-rich Low_complexity Low_complexity 1 90 0 303 263 136 8 chr9 34801739 34801857 -83060770 + MIR SINE MIR 20 152 -56 1306 214 104 33 chr9 34802143 34802760 -83059867 - L2 LINE L2 -32 3281 2626 227 27 0 54 chr9 34802994 34803031 -83059596 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 2103 113 0 31 chr9 34803188 34803479 -83059148 - AluSg SINE Alu -5 305 24 192 308 92 25 chr9 34803668 34803788 -83058839 - L2 LINE L2 -213 3059 2932 1289 0 74 302 chr9 34804001 34804201 -83058426 - L1ME2 LINE L1 -22 6142 6011 1851 125 0 47 chr9 34804201 34804376 -83058251 - AluJo SINE Alu -12 300 141 1993 138 3 17 chr9 34804376 34804698 -83057929 - AluSx SINE Alu 0 312 1 1851 125 0 47 chr9 34804698 34804801 -83057826 - AluJo SINE Alu -171 141 35 1289 0 74 302 chr9 34804801 34805071 -83057556 - L1ME2 LINE L1 -153 6011 5681 781 331 70 31 chr9 34805092 34805536 -83057091 - L3 LINE CR1 -13 1564 1104 355 321 72 27 chr9 34805822 34806047 -83056580 - LTR16A LTR ERVL -221 229 2 418 324 29 7 chr9 34806168 34806307 -83056320 - L3 LINE CR1 -497 1080 939 470 303 42 19 chr9 34807098 34807283 -83055344 - MIR SINE MIR -23 239 43 205 342 0 0 chr9 34807703 34807779 -83054848 + (CA)n Simple_repeat Simple_repeat 2 77 0 368 297 110 0 chr9 34808330 34808448 -83054179 - L2 LINE L2 0 3313 3183 2286 85 10 33 chr9 34808486 34808793 -83053834 - AluSx SINE Alu -12 300 1 325 333 144 11 chr9 34809245 34809614 -83053013 - L2 LINE L2 -774 2540 2123 1553 125 92 60 chr9 34810215 34810496 -83052131 + AluJo SINE Alu 10 299 -13 384 167 42 0 chr9 34811316 34811388 -83051239 - MLT1J LTR MaLR -9 502 428 971 244 116 0 chr9 34811418 34811737 -83050890 - MLT1J LTR MaLR -152 359 4 2462 99 3 0 chr9 34812316 34812672 -83049955 - AluSp SINE Alu 0 357 1 230 296 0 0 chr9 34812712 34812766 -83049861 - L2 LINE L2 -224 3048 2995 2058 146 0 3 chr9 34812792 34813100 -83049527 + AluSx SINE Alu 1 307 -5 213 229 0 0 chr9 34813791 34813839 -83048788 - L2 LINE L2 0 3313 3266 238 143 63 0 chr9 34813860 34813923 -83048704 + (TA)n Simple_repeat Simple_repeat 2 68 0 480 308 89 54 chr9 34814119 34814505 -83048122 - L2 LINE L2 -221 3051 2636 767 263 83 33 chr9 34814568 34814808 -83047819 + MIR SINE MIR 2 253 -9 828 158 0 0 chr9 34815187 34815307 -83047320 - FLAM_A SINE Alu -13 120 1 1934 144 3 33 chr9 34815311 34815616 -83047011 - AluSx SINE Alu -16 296 1 303 240 83 52 chr9 34817923 34818019 -83044608 + L2 LINE L2 3152 3250 -22 576 274 67 17 chr9 34818526 34818705 -83043922 + MIR SINE MIR 17 204 -58 375 289 110 16 chr9 34818884 34819130 -83043497 + L1ME4a LINE L1 5575 5843 -278 2259 87 10 26 chr9 34819340 34819649 -83042978 + AluSx SINE Alu 1 304 -8 230 291 26 68 chr9 34819708 34819825 -83042802 + MIR3 SINE MIR 86 197 -11 496 266 158 0 chr9 34819972 34820194 -83042433 - MIR SINE MIR -1 261 5 2223 110 7 10 chr9 34820405 34820713 -83041914 + AluSx SINE Alu 1 307 -5 591 284 108 11 chr9 34821143 34821327 -83041300 - MIR SINE MIR -11 251 48 928 211 12 0 chr9 34821327 34821493 -83041134 - FAM SINE Alu -3 172 5 591 284 108 11 chr9 34821493 34821534 -83041093 - MIR SINE MIR -214 48 12 387 265 15 29 chr9 34822623 34822759 -83039868 + L1ME LINE L1 5615 5748 -418 25 0 0 0 chr9 34822982 34823007 -83039620 + AT_rich Low_complexity Low_complexity 1 25 0 185 283 167 66 chr9 34823229 34823427 -83039200 - L2 LINE L2 -20 3293 3076 258 182 0 73 chr9 34823529 34823584 -83039043 + L2 LINE L2 3263 3313 0 2564 83 3 0 chr9 34823703 34824015 -83038612 + AluSq SINE Alu 1 313 0 182 299 0 23 chr9 34824237 34824324 -83038303 + L2 LINE L2 2998 3082 -190 455 283 104 26 chr9 34824346 34824576 -83038051 - MIR SINE MIR -1 261 14 237 300 134 19 chr9 34824836 34824990 -83037637 - MIR SINE MIR -66 142 28 2148 117 0 3 chr9 34827507 34827797 -83034830 + AluSg SINE Alu 1 289 -21 233 284 74 21 chr9 34828098 34828193 -83034434 + MIR3 SINE MIR 7 106 -102 674 278 120 13 chr9 34828216 34828450 -83034177 + MIR SINE MIR 3 261 -1 1063 137 44 0 chr9 34829393 34829576 -83033051 + MER3 DNA MER1_type 12 202 -7 840 269 58 24 chr9 34830020 34830399 -83032228 - L1ME4a LINE L1 -4 6117 5726 2021 128 4 0 chr9 34830539 34830813 -83031814 + AluSx SINE Alu 1 275 -37 225 94 0 0 chr9 34830818 34830850 -83031777 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 368 255 9 0 chr9 34830882 34830988 -83031639 + L1ME LINE L1 5563 5669 -452 2311 86 7 3 chr9 34831009 34831300 -83031327 + AluSp SINE Alu 1 292 -21 2140 116 25 42 chr9 34831369 34831723 -83030904 + MER7A DNA MER2_type 1 346 0 2118 96 40 0 chr9 34832116 34832411 -83030216 + AluSq SINE Alu 1 306 0 413 243 156 52 chr9 34832635 34832734 -83029893 + MIR SINE MIR 56 143 -119 2385 125 17 3 chr9 34832734 34833094 -83029533 + MER47A DNA MER2_type 1 365 -1 413 243 156 52 chr9 34833094 34833167 -83029460 + MIR SINE MIR 143 246 -16 508 246 46 8 chr9 34833555 34833685 -83028942 + L2 LINE L2 3179 3313 0 2399 72 14 0 chr9 34833838 34834129 -83028498 + AluY SINE Alu 1 295 -16 2288 105 10 7 chr9 34834282 34834587 -83028040 - AluSx SINE Alu -6 306 1 202 226 0 81 chr9 34834682 34834744 -83027883 + MER5C DNA MER1_type 146 202 -122 1556 189 56 3 chr9 34835402 34835688 -83026939 - AluJb SINE Alu -10 302 2 535 216 126 65 chr9 34835862 34835927 -83026700 - MIR SINE MIR -45 217 157 2206 116 7 3 chr9 34835927 34836230 -83026397 - AluSx SINE Alu -8 304 1 535 216 126 65 chr9 34836230 34836363 -83026264 - MIR SINE MIR -105 157 7 1022 168 164 14 chr9 34836410 34836618 -83026009 - MER8 DNA MER2_type 0 239 1 2126 132 4 0 chr9 34837043 34837354 -83025273 + AluSx SINE Alu 1 312 0 1839 143 18 4 chr9 34838253 34838533 -83024094 + AluJb SINE Alu 26 309 -3 449 252 59 8 chr9 34838540 34838659 -83023968 - L2 LINE L2 -14 3299 3175 590 286 53 31 chr9 34838833 34839060 -83023567 - L2 LINE L2 -671 2643 2412 180 152 0 0 chr9 34839933 34839966 -83022661 + T-rich Low_complexity Low_complexity 1 33 0 221 308 43 34 chr9 34840092 34840209 -83022418 + MIR SINE MIR 94 211 -51 2165 112 0 3 chr9 34840243 34840529 -83022098 - AluSx SINE Alu -16 296 12 201 231 0 197 chr9 34840555 34840672 -83021955 + MIR3 SINE MIR 84 177 -31 2333 78 7 13 chr9 34840896 34841202 -83021425 + AluSq SINE Alu 1 304 -9 2167 142 3 0 chr9 34841281 34841591 -83021036 - AluSx SINE Alu -1 311 1 376 42 0 0 chr9 34841604 34841652 -83020975 - MER41B LTR ERV1 -110 525 478 439 273 193 6 chr9 34842941 34843102 -83019525 + MIR SINE MIR 7 197 -65 252 323 254 7 chr9 34843554 34843857 -83018770 + L2 LINE L2 1991 2368 -946 787 306 92 45 chr9 34843896 34844406 -83018221 + L2 LINE L2 1883 2416 -898 231 252 78 78 chr9 34845108 34845223 -83017404 + LTR67 LTR ERVL 428 542 -15 * 290 237 0 0 chr9 34845166 34845225 -83017402 + MLT1K LTR MaLR 515 573 -15 633 214 50 7 chr9 34845740 34845880 -83016747 - MER5B DNA MER1_type -32 146 1 1169 224 105 69 chr9 34846002 34846507 -83016120 - L1M4 LINE L1 -2511 3635 3105 1800 156 13 13 chr9 34846507 34846809 -83015818 - AluJo SINE Alu 0 312 11 1169 224 105 69 chr9 34846809 34846883 -83015744 - L1M4 LINE L1 -3041 3105 3035 2590 129 52 67 chr9 34846885 34847099 -83015528 - L1MC1 LINE L1 0 6333 6117 1843 154 10 0 chr9 34847099 34847392 -83015235 - AluSx SINE Alu -10 302 7 2590 129 52 67 chr9 34847392 34847697 -83014930 - L1MC1 LINE L1 -216 6117 5822 1938 150 0 0 chr9 34847709 34848015 -83014612 - AluJb SINE Alu -6 306 1 642 206 23 15 chr9 34848023 34848154 -83014473 - FLAM_A SINE Alu -5 137 6 244 150 0 0 chr9 34848159 34848199 -83014428 - L1MC1 LINE L1 -508 5825 5786 330 265 0 0 chr9 34848204 34848287 -83014340 - L1M4 LINE L1 -3113 3033 2951 452 167 0 0 chr9 34848290 34848374 -83014253 - L1MC5 LINE L1 -885 7076 6993 801 218 66 55 chr9 34848375 34848632 -83013995 + LTR41 LTR ERVL 2 261 -512 531 172 93 116 chr9 34848758 34849044 -83013583 + LTR41 LTR ERVL 460 523 0 1967 82 11 0 chr9 34849274 34849542 -83013085 + AluSx SINE Alu 1 271 -41 269 82 20 0 chr9 34849658 34849707 -83012920 + (TG)n Simple_repeat Simple_repeat 2 51 0 231 61 0 0 chr9 34849841 34849874 -83012753 + (CAGGG)n Simple_repeat Simple_repeat 3 35 0 198 0 0 0 chr9 34851295 34851317 -83011310 + (A)n Simple_repeat Simple_repeat 1 22 0 1302 161 90 7 chr9 34851323 34851602 -83011025 + AluJb SINE Alu 1 302 -10 181 191 0 64 chr9 34852345 34852392 -83010235 + MIR SINE MIR 117 160 -102 298 244 83 113 chr9 34852526 34852792 -83009835 + MER112 DNA MER1_type 1 258 -2 296 188 14 0 chr9 34852839 34852908 -83009719 - MER112 DNA MER1_type -178 82 13 2252 69 7 0 chr9 34852910 34853199 -83009428 + AluY SINE Alu 1 291 -20 767 176 244 19 chr9 34854406 34854611 -83008016 + MIR SINE MIR 12 262 0 370 289 141 26 chr9 34854701 34854857 -83007770 - MIR SINE MIR -40 222 49 332 293 84 56 chr9 34855128 34855343 -83007284 - MIR SINE MIR -41 221 1 24 0 0 0 chr9 34856748 34856772 -83005855 + AT_rich Low_complexity Low_complexity 1 24 0 263 288 26 115 chr9 34857057 34857218 -83005409 + L2 LINE L2 2561 2698 -616 1991 100 41 0 chr9 34857218 34857509 -83005118 - AluSq SINE Alu -10 303 1 263 288 26 115 chr9 34857509 34857573 -83005054 + L2 LINE L2 2698 2766 -548 1559 155 40 25 chr9 34857732 34858009 -83004618 + AluJo SINE Alu 1 281 -31 351 317 92 32 chr9 34858033 34858282 -83004345 + L2 LINE L2 3027 3290 -23 * 525 293 64 71 chr9 34858278 34858544 -83004083 - L3 LINE CR1 -179 1398 1135 1639 180 70 97 chr9 34858718 34859162 -83003465 - MLT1E1 LTR MaLR -2 652 221 588 160 11 11 chr9 34859150 34859244 -83003383 - MLT1E1 LTR MaLR -558 96 3 * 904 263 182 10 chr9 34859297 34859784 -83002843 - L2 LINE L2 -5 3308 2906 1661 172 3 24 chr9 34859784 34860081 -83002546 + AluJo SINE Alu 3 293 -19 904 263 182 10 chr9 34860081 34860316 -83002311 - L2 LINE L2 -407 2906 2378 1946 145 10 0 chr9 34860327 34860638 -83001989 - L1MD3 LINE L1 -9 7986 7673 1412 160 0 13 chr9 34860711 34860949 -83001678 + AluJo SINE Alu 23 257 -55 341 254 118 18 chr9 34861023 34861133 -83001494 - L2 LINE L2 0 3313 3193 399 277 68 40 chr9 34861223 34861352 -83001275 + MIR SINE MIR 31 168 -94 1971 98 40 14 chr9 34861352 34861649 -83000978 - AluSc SINE Alu -4 305 1 399 277 68 40 chr9 34861649 34861696 -83000931 + MIR SINE MIR 168 212 -50 204 281 314 8 chr9 34861936 34862057 -83000570 + L2 LINE L2 3113 3270 -2 530 128 0 0 chr9 34862973 34863059 -82999568 - L1M2 LINE L1 -610 5681 5596 2056 135 0 0 chr9 34863073 34863370 -82999257 + AluSx SINE Alu 1 297 -15 1355 124 48 28 chr9 34863391 34863641 -82998986 - L1MA4 LINE L1 -3 6297 6043 1685 160 31 0 chr9 34863641 34863935 -82998692 - AluJo SINE Alu -9 303 1 2193 116 0 0 chr9 34863940 34864250 -82998377 - AluSg SINE Alu 0 310 1 22 0 0 0 chr9 34864250 34864272 -82998355 + AT_rich Low_complexity Low_complexity 1 22 0 2143 114 16 0 chr9 34865267 34865574 -82997053 + AluSx SINE Alu 1 312 0 269 265 162 26 chr9 34866351 34866468 -82996159 - L2 LINE L2 -3 3310 3178 581 347 116 14 chr9 34867349 34867833 -82994794 - L2 LINE L2 -647 2667 2135 494 275 164 11 chr9 34868722 34868911 -82993716 - MIR SINE MIR -43 219 2 1854 151 0 22 chr9 34869068 34869387 -82993240 - AluJb SINE Alu 0 312 1 1808 165 0 0 chr9 34869442 34869745 -82992882 + AluJo SINE Alu 1 303 -9 486 286 69 25 chr9 34869852 34870055 -82992572 + MIR SINE MIR 51 262 0 2296 77 0 0 chr9 34870357 34870655 -82991972 + AluY SINE Alu 1 298 -13 934 138 0 0 chr9 34870926 34871071 -82991556 - FRAM SINE Alu -30 146 2 325 226 0 0 chr9 34871077 34871139 -82991488 + MER5B DNA MER1_type 117 178 0 420 285 191 29 chr9 34871412 34871721 -82990906 + MARNA DNA Mariner 169 527 -59 623 95 0 48 chr9 34872588 34872693 -82989934 - MER50 LTR ERV1 -138 596 497 2179 99 0 0 chr9 34872838 34873131 -82989496 - AluSg SINE Alu -17 293 1 302 254 15 0 chr9 34873211 34873278 -82989349 + L2 LINE L2 3246 3313 0 502 258 67 0 chr9 34873521 34873641 -82988986 + MIR SINE MIR 54 181 -81 2100 119 0 0 chr9 34873869 34874171 -82988456 + AluSx SINE Alu 1 302 -10 280 239 0 28 chr9 34874382 34874453 -82988174 - MIR3 SINE MIR -136 72 4 329 316 6 29 chr9 34874522 34874587 -82988040 + GA-rich Low_complexity Low_complexity 4 69 -104 929 125 0 22 chr9 34874587 34874723 -82987904 + FLAM_C SINE Alu 1 133 0 329 316 6 29 chr9 34874723 34874831 -82987796 + GA-rich Low_complexity Low_complexity 69 173 0 2076 114 3 3 chr9 34875266 34875564 -82987063 - AluSx SINE Alu -14 298 1 694 139 43 0 chr9 34875675 34875790 -82986837 + AluSq/x SINE Alu 2 121 -192 1977 134 0 0 chr9 34875974 34876273 -82986354 + AluSx SINE Alu 1 299 -13 586 265 41 49 chr9 34876279 34876524 -82986103 + L1ME2 LINE L1 5922 6164 0 1213 69 6 0 chr9 34876662 34876821 -82985806 + AluSq SINE Alu 140 299 -14 264 328 138 42 chr9 34876824 34877178 -82985449 - L3 LINE CR1 -44 1533 1146 1465 167 45 21 chr9 34877196 34877483 -82985144 + AluJb SINE Alu 1 294 -18 252 130 130 0 chr9 34877891 34877937 -82984690 - AluSc SINE Alu -6 296 245 437 129 0 0 chr9 34877937 34877999 -82984628 - AluSc SINE Alu -114 195 134 506 328 225 10 chr9 34878013 34878400 -82984227 - L3 LINE CR1 -627 950 481 1875 158 3 6 chr9 34878716 34879027 -82983600 + AluJb SINE Alu 1 310 -2 289 108 0 0 chr9 34879130 34879167 -82983460 + Alu SINE Alu 4 40 -262 576 148 11 0 chr9 34879167 34879255 -82983372 + AluJb SINE Alu 208 296 -16 2101 103 10 0 chr9 34879272 34879563 -82983064 + AluSq SINE Alu 1 294 -19 1943 136 0 0 chr9 34881103 34881389 -82981238 - AluSx SINE Alu -26 286 1 2210 102 3 13 chr9 34881530 34881844 -82980783 - AluSx SINE Alu -1 311 1 6764 194 106 50 chr9 34883075 34883174 -82979453 + L1M4b LINE L1 4 96 -6863 1667 176 3 13 chr9 34883174 34883476 -82979151 + AluJb SINE Alu 1 299 -13 6764 194 106 50 chr9 34883476 34883498 -82979129 + L1M4b LINE L1 96 115 -6844 2063 133 0 3 chr9 34883498 34883798 -82978829 + AluSx SINE Alu 1 299 -13 6764 194 106 50 chr9 34883798 34885053 -82977574 + L1M4b LINE L1 115 1298 -5661 2209 107 0 0 chr9 34885053 34885362 -82977265 + AluSg SINE Alu 1 309 -1 6764 194 106 50 chr9 34885362 34885540 -82977087 + L1M4b LINE L1 1298 1465 -5494 1397 191 9 67 chr9 34885540 34885676 -82976951 + AluJo SINE Alu 1 143 -169 2046 127 0 3 chr9 34885676 34885967 -82976660 + AluSx SINE Alu 1 290 -22 1397 191 9 67 chr9 34885967 34886145 -82976482 + AluJo SINE Alu 143 297 -15 6764 194 106 50 chr9 34886145 34886226 -82976401 + L1M4b LINE L1 1465 1540 -5419 2254 80 10 17 chr9 34886226 34886528 -82976099 + AluY SINE Alu 1 300 -11 6764 194 106 50 chr9 34886528 34886961 -82975666 + L1M4b LINE L1 1540 2185 -4774 2237 69 31 0 chr9 34886962 34887253 -82975374 + AluY SINE Alu 1 300 -11 508 241 138 106 chr9 34887750 34888148 -82974479 + MLT1J LTR MaLR 101 511 0 1015 75 0 8 chr9 34888760 34888894 -82973733 - AluSq/x SINE Alu -180 133 1 186 43 0 0 chr9 34888910 34888933 -82973694 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr9 34889024 34889061 -82973566 + (CA)n Simple_repeat Simple_repeat 1 37 0 2256 86 0 19 chr9 34889684 34889999 -82972628 + AluY SINE Alu 1 309 -2 2031 114 0 13 chr9 34890013 34890149 -82972478 + AluSx SINE Alu 1 137 -175 2111 107 0 20 chr9 34890149 34890447 -82972180 + AluSp SINE Alu 1 292 -21 2031 114 0 13 chr9 34890447 34890617 -82972010 + AluSx SINE Alu 137 303 -9 451 248 74 0 chr9 34892003 34892124 -82970503 - MIR SINE MIR -83 179 50 1419 88 0 0 chr9 34892912 34893093 -82969534 + AluSg SINE Alu 1 181 -129 2105 103 3 38 chr9 34893464 34893784 -82968843 + AluSc SINE Alu 1 309 0 2201 103 3 22 chr9 34893796 34894115 -82968512 + AluSp SINE Alu 1 313 0 2027 98 13 63 chr9 34894587 34894905 -82967722 - AluSq SINE Alu -11 302 1 372 250 14 71 chr9 34894970 34895110 -82967517 - L2 LINE L2 -559 2755 2624 2347 87 0 0 chr9 34895661 34895960 -82966667 - AluSg SINE Alu -11 299 1 1877 105 59 36 chr9 34896294 34896598 -82966029 + AluSq SINE Alu 1 311 -2 272 229 60 24 chr9 34896789 34896872 -82965755 + MIR SINE MIR 36 121 -87 821 81 8 32 chr9 34897425 34897548 -82965079 + FLAM_C SINE Alu 23 142 -1 2260 100 10 3 chr9 34898160 34898470 -82964157 + AluSq SINE Alu 1 312 -1 296 333 75 0 chr9 34898610 34898703 -82963924 - MIR SINE MIR -107 155 56 304 309 13 81 chr9 34899397 34899546 -82963081 + MIR SINE MIR 113 251 -11 195 261 23 57 chr9 34899685 34899773 -82962854 - L2 LINE L2 -38 3275 3191 668 150 67 25 chr9 34899841 34899961 -82962666 - FLAM_C SINE Alu -7 126 2 562 344 42 8 chr9 34903776 34904017 -82958610 - MIR SINE MIR -8 254 6 721 256 113 135 chr9 34908583 34908783 -82953844 + L2 LINE L2 2276 2479 -834 2217 62 24 0 chr9 34908783 34909071 -82953556 + AluY SINE Alu 1 295 -16 721 256 113 135 chr9 34909071 34909362 -82953265 + L2 LINE L2 2479 2775 -538 1952 114 45 10 chr9 34909362 34909652 -82952975 + AluSq SINE Alu 1 300 -13 721 256 113 135 chr9 34909652 34910221 -82952406 + L2 LINE L2 2775 3295 -18 2067 126 13 0 chr9 34911062 34911363 -82951264 + AluSx SINE Alu 1 305 -7 316 365 32 6 chr9 34912586 34912742 -82949885 + L2 LINE L2 2467 2626 -688 315 0 0 0 chr9 34912798 34912833 -82949794 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1809 142 0 0 chr9 34912840 34913115 -82949512 - AluSx SINE Alu -37 275 1 714 256 83 9 chr9 34913115 34913439 -82949188 - L1MC4 LINE L1 -4 8038 7691 329 0 24 0 chr9 34913488 34913529 -82949098 + (TA)n Simple_repeat Simple_repeat 2 43 0 1881 143 7 13 chr9 34913529 34913837 -82948790 - AluSx SINE Alu -6 306 1 656 269 42 0 chr9 34913840 34914052 -82948575 - L1ME3A LINE L1 -5 6165 5945 2322 58 0 10 chr9 34914062 34914383 -82948244 - AluY SINE Alu 0 311 1 305 339 8 0 chr9 34914421 34914551 -82948076 + L2 LINE L2 2654 2784 -530 186 71 0 0 chr9 34914601 34914629 -82947998 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2034 112 0 18 chr9 34914631 34914916 -82947711 - AluSx SINE Alu -32 280 1 1026 195 212 0 chr9 34914941 34915167 -82947460 - AluJb SINE Alu -30 282 9 271 344 63 42 chr9 34915172 34915361 -82947266 + L2 LINE L2 2836 3028 -244 1280 142 49 0 chr9 34915361 34915565 -82947062 - AluJb SINE Alu -98 214 1 1958 148 13 0 chr9 34915616 34915920 -82946707 - AluSx SINE Alu -2 310 3 198 71 0 0 chr9 34915943 34915971 -82946656 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2007 124 6 13 chr9 34915980 34916294 -82946333 - AluSx SINE Alu 0 312 1 1296 185 0 0 chr9 34917091 34917307 -82945320 + AluJo SINE Alu 22 237 -75 2385 79 0 3 chr9 34917577 34917881 -82944746 - AluSq SINE Alu -10 303 1 1334 182 30 34 chr9 34918083 34918347 -82944280 + AluJo SINE Alu 34 296 -16 2121 112 3 0 chr9 34918423 34918718 -82943909 + AluSx SINE Alu 2 297 -15 838 129 23 23 chr9 34922095 34922227 -82940400 - FLAM_C SINE Alu 0 133 2 2290 89 3 13 chr9 34922615 34922928 -82939699 - AluSx SINE Alu -2 310 1 312 175 0 0 chr9 34925472 34925535 -82937092 + (TG)n Simple_repeat Simple_repeat 1 63 0 29 0 0 0 chr9 34926048 34926077 -82936550 + AT_rich Low_complexity Low_complexity 1 29 0 311 253 121 20 chr9 34926364 34926463 -82936164 + L3 LINE CR1 1344 1452 -125 228 326 91 0 chr9 34926492 34926624 -82936003 + L2 LINE L2 2563 2706 -608 190 289 50 6 chr9 34927262 34927334 -82935293 - MIR SINE MIR -68 140 74 350 271 181 19 chr9 34927687 34927842 -82934785 + MIR SINE MIR 72 251 -11 2472 53 0 3 chr9 34928372 34928671 -82933956 + AluY SINE Alu 1 298 -13 2196 114 0 0 chr9 34928671 34928968 -82933659 + AluSg SINE Alu 1 298 -12 2166 115 0 0 chr9 34929339 34929656 -82932971 - AluSq SINE Alu 0 313 1 208 214 0 0 chr9 34929936 34929978 -82932649 + (GGGTG)n Simple_repeat Simple_repeat 4 45 0 206 254 60 0 chr9 34930447 34930514 -82932113 - MIR SINE MIR -103 105 35 502 253 62 43 chr9 34930631 34930793 -82931834 + LTR33 LTR ERVL 26 190 -331 452 279 93 5 chr9 34930817 34931021 -82931606 + LTR33 LTR ERVL 297 518 -3 519 269 47 27 chr9 34931024 34931173 -82931454 + MIR SINE MIR 107 258 -4 183 250 39 0 chr9 34931625 34931677 -82930950 - L3b LINE CR1 -178 1405 1352 277 288 9 0 chr9 34932783 34932894 -82929733 + (CA)n Simple_repeat Simple_repeat 2 113 0 209 364 73 33 chr9 34933276 34933427 -82929200 - MIR SINE MIR -67 141 16 2109 109 0 14 chr9 34933687 34933981 -82928646 - AluSx SINE Alu -22 290 1 1805 166 16 3 chr9 34933985 34934292 -82928335 - AluJo SINE Alu -1 311 1 989 127 0 0 chr9 34934327 34934469 -82928158 + AluSq/x SINE Alu 1 142 -170 311 231 13 0 chr9 34934721 34934799 -82927828 + AluS SINE Alu 1 79 -224 1442 170 0 12 chr9 34934799 34935075 -82927552 + AluSx SINE Alu 33 305 0 1419 191 19 44 chr9 34935089 34935409 -82927218 - AluJo SINE Alu 0 312 1 2198 108 0 0 chr9 34935415 34935712 -82926915 - AluSq SINE Alu -16 297 1 534 306 104 20 chr9 34935813 34936160 -82926467 - MLT1K LTR MaLR -2 586 211 187 234 0 94 chr9 34936239 34936303 -82926324 - L2 LINE L2 -93 3220 3163 378 312 89 7 chr9 34936373 34936594 -82926033 - L2 LINE L2 -245 3027 2790 249 348 0 44 chr9 34936738 34936873 -82925754 + MIR3 SINE MIR 71 199 -9 220 27 54 0 chr9 34937147 34937184 -82925443 + (CAAA)n Simple_repeat Simple_repeat 4 42 0 2047 111 3 7 chr9 34937186 34937505 -82925122 + AluSx SINE Alu 1 318 0 2018 150 0 13 chr9 34937740 34938054 -82924573 + AluJb SINE Alu 1 310 -2 1639 152 73 13 chr9 34938060 34938376 -82924251 + L1MB7 LINE L1 5833 6167 -17 2234 98 0 3 chr9 34938392 34938689 -82923938 - AluSc SINE Alu -13 296 1 2009 128 0 0 chr9 34938768 34939089 -82923538 - AluSx SINE Alu 0 323 3 2297 67 3 0 chr9 34939384 34939703 -82922924 - AluSp SINE Alu 0 320 1 1539 111 5 9 chr9 34939729 34939946 -82922681 + AluJo SINE Alu 84 299 -13 254 191 246 9 chr9 34940007 34940117 -82922510 + L2 LINE L2 3178 3313 0 2262 76 0 7 chr9 34941454 34941742 -82920885 - AluSx SINE Alu -22 290 5 2204 104 3 0 chr9 34941750 34942049 -82920578 - AluSx SINE Alu -12 300 1 377 324 98 17 chr9 34942111 34942284 -82920343 + L2 LINE L2 3127 3313 0 258 246 87 0 chr9 34942276 34942345 -82920282 - MIR SINE MIR -2 260 186 * 2442 64 0 6 chr9 34942616 34942929 -82919698 + AluY SINE Alu 1 311 0 183 100 0 0 chr9 34943025 34943055 -82919572 + (T)n Simple_repeat Simple_repeat 1 30 0 6909 122 26 67 chr9 34943258 34944622 -82918005 - SVA Other Other 0 1386 79 2042 117 18 3 chr9 34944368 34944650 -82917977 + AluSq SINE Alu 9 294 -19 * 388 339 73 46 chr9 34944667 34944826 -82917801 + L1ME2 LINE L1 5588 5788 -378 27 29 0 0 chr9 34944826 34944860 -82917767 + AT_rich Low_complexity Low_complexity 1 34 0 388 339 73 46 chr9 34944860 34944885 -82917742 + L1ME2 LINE L1 5788 5811 -355 603 265 41 49 chr9 34945304 34945549 -82917078 + L1ME2 LINE L1 5922 6164 0 1282 69 6 0 chr9 34945687 34945846 -82916781 + AluSq SINE Alu 140 299 -14 288 328 88 8 chr9 34945917 34946042 -82916585 - L3 LINE CR1 -102 1475 1341 1584 167 45 21 chr9 34946221 34946509 -82916118 + AluJb SINE Alu 1 295 -17 254 130 130 0 chr9 34946917 34946963 -82915664 - AluSc SINE Alu -6 296 245 432 129 0 0 chr9 34946963 34947025 -82915602 - AluSc SINE Alu -114 195 134 423 329 88 12 chr9 34947039 34947426 -82915201 - L3 LINE CR1 -627 950 481 2137 154 0 0 chr9 34947742 34948054 -82914573 + AluJb SINE Alu 1 312 0 286 108 0 0 chr9 34948157 34948194 -82914433 + Alu SINE Alu 4 40 -262 582 146 11 0 chr9 34948194 34948283 -82914344 + AluJb SINE Alu 208 297 -15 2377 97 10 0 chr9 34948300 34948608 -82914019 + AluSq SINE Alu 1 311 -2 2061 136 0 0 chr9 34950130 34950416 -82912211 - AluSx SINE Alu -26 286 1 2340 102 3 13 chr9 34950557 34950871 -82911756 - AluSx SINE Alu -1 311 1 6801 196 107 50 chr9 34952101 34952200 -82910427 + L1M4b LINE L1 4 96 -7042 1782 176 3 13 chr9 34952200 34952502 -82910125 + AluJb SINE Alu 1 299 -13 6801 196 107 50 chr9 34952502 34952524 -82910103 + L1M4b LINE L1 96 115 -7023 2187 133 0 3 chr9 34952524 34952824 -82909803 + AluSx SINE Alu 1 299 -13 6801 196 107 50 chr9 34952824 34954079 -82908548 + L1M4b LINE L1 115 1297 -5841 2342 107 0 0 chr9 34954079 34954388 -82908239 + AluSg SINE Alu 1 309 -1 6801 196 107 50 chr9 34954388 34954567 -82908060 + L1M4b LINE L1 1297 1464 -5674 1500 184 9 67 chr9 34954567 34954703 -82907924 + AluJo SINE Alu 1 143 -169 2253 121 0 0 chr9 34954703 34954993 -82907634 + AluSx SINE Alu 1 290 -22 1500 184 9 67 chr9 34954993 34955171 -82907456 + AluJo SINE Alu 143 297 -15 6801 196 107 50 chr9 34955171 34955252 -82907375 + L1M4b LINE L1 1464 1539 -5599 2387 80 10 17 chr9 34955252 34955554 -82907073 + AluY SINE Alu 1 300 -11 6801 196 107 50 chr9 34955554 34955988 -82906639 + L1M4b LINE L1 1539 1947 -5191 2542 56 7 3 chr9 34955988 34956294 -82906333 + AluY SINE Alu 1 307 -4 6801 196 107 50 chr9 34956294 34956623 -82906004 + L1M4b LINE L1 1947 2687 -4451 679 270 83 45 chr9 34956653 34956735 -82905892 + L1MEc LINE L1 1734 1811 -4585 2199 146 0 0 chr9 34956735 34957043 -82905584 + AluSx SINE Alu 1 308 -4 1507 214 3 7 chr9 34957043 34957331 -82905296 + AluJo SINE Alu 1 288 -24 679 270 83 45 chr9 34957331 34957762 -82904865 + L1MEc LINE L1 1810 2268 -4128 829 194 0 0 chr9 34957793 34957927 -82904700 - AluJo SINE Alu -178 134 1 440 226 20 14 chr9 34957927 34957983 -82904644 + L1MEc LINE L1 2245 2299 -3916 2342 74 0 7 chr9 34957983 34958267 -82904360 - AluSg SINE Alu -28 282 1 440 226 20 14 chr9 34958267 34958356 -82904271 + L1MEc LINE L1 2299 2391 -3824 1693 163 6 51 chr9 34958614 34958927 -82903700 - AluJb SINE Alu -13 299 1 1603 213 57 108 chr9 34959585 34960177 -82902450 - MER77 LTR ERV1 -4 601 40 2157 138 0 6 chr9 34960247 34960559 -82902068 - AluSx SINE Alu -2 310 1 1136 89 0 0 chr9 34960559 34960694 -82901933 - AluSq/x SINE Alu -178 135 1 2242 80 49 0 chr9 34961497 34961783 -82900844 + AluY SINE Alu 1 300 -11 347 153 137 48 chr9 34963099 34963223 -82899404 + L1ME2 LINE L1 5991 6125 -39 2270 110 3 0 chr9 34963445 34963745 -82898882 - AluSx SINE Alu -11 301 1 458 298 35 0 chr9 34963867 34964008 -82898619 - MLT1L LTR MaLR 0 615 470 474 275 135 10 chr9 34964192 34964385 -82898242 - MLT1L LTR MaLR -398 217 1 2300 114 0 0 chr9 34964465 34964764 -82897863 + AluSx SINE Alu 3 301 -11 1721 194 7 7 chr9 34964773 34965082 -82897545 + AluJo SINE Alu 1 309 -3 328 272 130 27 chr9 34965261 34965445 -82897182 - L1MC4a LINE L1 -1898 5910 5708 448 261 37 43 chr9 34965486 34965674 -82896953 - L1MC5 LINE L1 -50 7911 7725 412 102 286 0 chr9 34965685 34965783 -82896844 - L1MB5 LINE L1 0 6174 6049 2473 92 0 6 chr9 34965818 34966133 -82896494 - AluSq SINE Alu 0 313 1 26 0 0 0 chr9 34966133 34966159 -82896468 + AT_rich Low_complexity Low_complexity 1 26 0 555 165 0 0 chr9 34966159 34966250 -82896377 - FLAM_C SINE Alu -23 120 30 3190 158 44 31 chr9 34966252 34966812 -82895815 - L1MB5 LINE L1 -115 6059 5489 2352 88 0 0 chr9 34966812 34967109 -82895518 - AluSg SINE Alu -8 302 6 3190 158 44 31 chr9 34967109 34967164 -82895463 - L1MB5 LINE L1 -685 5489 5436 808 189 34 0 chr9 34967214 34967362 -82895265 - AluJb SINE Alu -20 292 140 22 70 0 0 chr9 34967367 34967410 -82895217 + AT_rich Low_complexity Low_complexity 1 43 0 1921 61 4 4 chr9 34967420 34967650 -82894977 + AluSq SINE Alu 1 230 -83 552 150 0 0 chr9 34967653 34967733 -82894894 - AluJo/FLAM SINE Alu -188 124 45 1120 169 36 1 chr9 34967761 34968062 -82894565 - MER2 DNA MER2_type 0 345 8 790 230 7 0 chr9 34968181 34968329 -82894298 + FRAM SINE Alu 1 146 -30 261 0 0 0 chr9 34968332 34968361 -82894266 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2448 98 0 0 chr9 34968367 34968673 -82893954 + AluSx SINE Alu 1 306 -6 2128 131 3 0 chr9 34968675 34968980 -82893647 + AluSx SINE Alu 2 307 -5 40 21 0 0 chr9 34969601 34969648 -82892979 + AT_rich Low_complexity Low_complexity 1 47 0 220 165 35 71 chr9 34969712 34969775 -82892852 + (TA)n Simple_repeat Simple_repeat 1 65 -17 2067 128 57 25 chr9 34969775 34970128 -82892499 - THE1B LTR MaLR 0 364 1 12129 88 5 0 chr9 34970128 34971701 -82890926 - THE1B-int LTR MaLR 0 1580 1 2200 123 47 33 chr9 34971701 34972060 -82890567 - THE1B LTR MaLR 0 364 1 220 165 35 71 chr9 34972060 34972079 -82890548 + (TA)n Simple_repeat Simple_repeat 62 82 0 29 0 0 0 chr9 34972139 34972168 -82890459 + AT_rich Low_complexity Low_complexity 1 29 0 810 157 21 14 chr9 34972249 34972389 -82890238 + AluJb SINE Alu 1 141 -171 2070 125 4 0 chr9 34972435 34972716 -82889911 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr9 34972729 34972752 -82889875 + (CA)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr9 34972756 34972785 -82889842 + AT_rich Low_complexity Low_complexity 1 29 0 2303 76 0 4 chr9 34972790 34973066 -82889561 + AluY SINE Alu 13 287 -24 634 202 46 35 chr9 34973080 34973253 -82889374 - L1MC5 LINE L1 -56 7905 7731 2249 192 168 19 chr9 34973765 34974448 -82888179 - Charlie1 DNA MER1_type 0 2761 1977 25 31 0 0 chr9 34974495 34974527 -82888100 + AT_rich Low_complexity Low_complexity 1 32 0 311 252 72 73 chr9 34975121 34975183 -82887444 - L1ME4a LINE L1 -2 6119 6058 2341 86 0 3 chr9 34975183 34975474 -82887153 + AluSc SINE Alu 1 290 -19 2371 119 0 0 chr9 34975478 34975790 -82886837 + AluSx SINE Alu 1 312 0 2348 99 0 0 chr9 34975793 34976085 -82886542 + AluSx SINE Alu 1 292 -20 311 252 72 73 chr9 34976085 34976431 -82886196 - L1ME4a LINE L1 -68 6053 5704 812 237 50 5 chr9 34977845 34978064 -82884563 - L1ME1 LINE L1 -2 6164 5936 5225 58 24 38 chr9 34978088 34978669 -82883958 + L1PB1 LINE L1 5444 6015 -136 2040 105 20 30 chr9 34978669 34978965 -82883662 + AluSg SINE Alu 3 295 -15 5225 58 24 38 chr9 34978965 34979101 -82883526 + L1PB1 LINE L1 6015 6151 0 1243 169 24 0 chr9 34979111 34979324 -82883303 - Tigger1 DNA MER2_type -2187 231 14 374 313 49 28 chr9 34979733 34979877 -82882750 - L2 LINE L2 -5 3267 3121 1337 168 10 0 chr9 34980410 34980619 -82882008 + AluJo SINE Alu 85 295 -17 2384 109 0 0 chr9 34980621 34980933 -82881694 + AluSx SINE Alu 1 312 0 762 198 0 0 chr9 34981309 34981430 -82881197 + FLAM_A SINE Alu 1 121 -12 2051 117 17 20 chr9 34981463 34981762 -82880865 + AluSx SINE Alu 1 298 -14 1535 184 60 11 chr9 34981776 34982059 -82880568 + AluJb SINE Alu 2 298 -14 277 301 54 0 chr9 34982659 34982752 -82879875 - L2 LINE L2 -1 3271 3174 631 48 60 0 chr9 34983389 34983473 -82879154 - HY3 scRNA scRNA -1 100 12 507 113 245 19 chr9 34983538 34983644 -82878983 - FLAM_C SINE Alu -2 131 2 2325 106 0 3 chr9 34984286 34984587 -82878040 - AluSq SINE Alu -13 300 1 2142 236 100 60 chr9 34985801 34986235 -82876392 - L1ME3A LINE L1 -3 6167 5752 2314 115 0 0 chr9 34986235 34986540 -82876087 - AluSq SINE Alu -8 305 1 2142 236 100 60 chr9 34986540 34987375 -82875252 - L1ME3A LINE L1 -418 5752 4860 1208 166 9 23 chr9 34987388 34987605 -82875022 + AluJb SINE Alu 87 300 -12 2069 92 29 57 chr9 34987607 34987921 -82874706 + AluY SINE Alu 1 305 -6 811 231 108 102 chr9 34987936 34988135 -82874492 - L1ME3A LINE L1 -1301 4845 4649 1710 171 3 46 chr9 34988135 34988440 -82874187 - AluJo SINE Alu -20 292 1 811 231 108 102 chr9 34988440 34988711 -82873916 - L1ME3A LINE L1 -1497 4649 4372 2327 100 0 0 chr9 34988728 34989019 -82873608 - AluY SINE Alu -20 291 1 35 0 0 0 chr9 34989022 34989057 -82873570 + AT_rich Low_complexity Low_complexity 1 35 0 1389 167 23 109 chr9 34989245 34989593 -82873034 - AluYb8 SINE Alu 0 318 1 740 207 44 151 chr9 34989602 34989911 -82872716 - L1ME3A LINE L1 -1784 4362 4104 2314 101 0 0 chr9 34989911 34990208 -82872419 + AluSx SINE Alu 1 297 -15 740 207 44 151 chr9 34990208 34990303 -82872324 - L1ME3A LINE L1 -2042 4104 4001 308 247 62 0 chr9 34990380 34990477 -82872150 + L1MC4 LINE L1 7940 8042 0 899 230 15 49 chr9 34990793 34991058 -82871569 + MIR SINE MIR 5 260 -2 198 275 0 0 chr9 34991200 34991269 -82871358 + (TA)n Simple_repeat Simple_repeat 2 70 0 270 209 115 101 chr9 34991293 34991441 -82871186 + Charlie8 DNA MER1_type 24 173 -2244 743 76 98 8 chr9 34991909 34992041 -82870586 - L1MA8 LINE L1 -2 6289 6146 2258 82 0 0 chr9 34992085 34992355 -82870272 + AluSq SINE Alu 1 270 -43 235 135 0 0 chr9 34992355 34992392 -82870235 + AluSq SINE Alu 253 289 -14 3951 138 30 44 chr9 34992425 34992436 -82870191 + L1MA6 LINE L1 5510 5520 -780 1838 155 10 10 chr9 34992436 34992745 -82869882 + AluJb SINE Alu 1 309 -3 3951 138 30 44 chr9 34992745 34993287 -82869340 + L1MA6 LINE L1 5520 6051 -249 2518 84 0 0 chr9 34993287 34993597 -82869030 - AluSp SINE Alu -3 310 1 3951 138 30 44 chr9 34993597 34993844 -82868783 + L1MA6 LINE L1 6051 6300 0 336 24 0 0 chr9 34993857 34993898 -82868729 + (TTA)n Simple_repeat Simple_repeat 1 41 0 2025 136 4 0 chr9 34993898 34994177 -82868450 - AluSx SINE Alu -32 280 1 2150 126 0 0 chr9 34995585 34995870 -82866757 + AluSq SINE Alu 1 285 -28 217 0 0 0 chr9 34995870 34995894 -82866733 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1969 160 3 13 chr9 34995918 34996230 -82866397 + AluJb SINE Alu 2 310 -2 212 315 79 11 chr9 34996317 34996406 -82866221 + L3 LINE CR1 1226 1320 -257 2281 87 0 10 chr9 34998545 34998843 -82863784 + AluSx SINE Alu 1 295 -17 2597 63 7 0 chr9 34999653 34999956 -82862671 - AluY SINE Alu -6 305 1 316 213 88 110 chr9 34999990 35000126 -82862501 - L1MC5 LINE L1 -31 7930 7798 343 281 29 29 chr9 35000132 35000271 -82862356 + Tigger8 DNA MER2_type 401 539 -127 21 0 0 0 chr9 35000372 35000393 -82862234 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 35001724 35001746 -82860881 + AT_rich Low_complexity Low_complexity 1 22 0 200 238 30 15 chr9 35002056 35002172 -82860455 + MIR SINE MIR 38 207 -55 214 300 64 91 chr9 35002730 35002795 -82859832 - L2 LINE L2 -557 2757 2692 1330 213 52 9 chr9 35002795 35003119 -82859508 - MER58B DNA MER1_type 0 341 4 214 300 64 91 chr9 35003119 35003273 -82859354 - L2 LINE L2 -622 2692 2544 203 152 0 0 chr9 35003771 35003804 -82858823 + GA-rich Low_complexity Low_complexity 2 34 0 194 273 0 0 chr9 35004814 35004858 -82857769 - MIR SINE MIR 0 262 219 723 159 45 70 chr9 35004896 35005053 -82857574 + FRAM SINE Alu 6 158 -18 2020 136 10 7 chr9 35005053 35005347 -82857280 + AluJo SINE Alu 1 295 -17 474 238 19 9 chr9 35005348 35005474 -82857153 - MIR SINE MIR -62 146 45 1604 251 179 44 chr9 35005907 35006124 -82856503 - L2 LINE L2 -340 2974 2788 2031 140 7 0 chr9 35006124 35006432 -82856195 - AluSx SINE Alu -2 310 1 1604 251 179 44 chr9 35006432 35006990 -82855637 - L2 LINE L2 -526 2788 2094 2572 61 0 0 chr9 35007251 35007548 -82855079 - AluY SINE Alu -14 297 1 193 339 63 16 chr9 35007930 35008057 -82854570 + L2 LINE L2 2625 2757 -557 1229 178 109 67 chr9 35008127 35008559 -82854068 - LTR7 LTR ERV1 0 450 1 301 209 13 3 chr9 35009346 35009424 -82853203 - MIR SINE MIR -43 165 88 2687 20 7 3 chr9 35009444 35009744 -82852883 - AluY SINE Alu -10 301 1 2387 108 0 0 chr9 35009858 35010165 -82852462 + AluSx SINE Alu 1 307 -5 364 238 0 0 chr9 35010426 35010506 -82852121 - MIR SINE MIR -160 102 23 298 322 68 0 chr9 35010925 35011043 -82851584 - MIR3 SINE MIR -23 185 60 228 315 0 0 chr9 35011127 35011181 -82851446 + (TG)n Simple_repeat Simple_repeat 1 54 0 299 130 19 0 chr9 35011244 35011298 -82851329 + CT-rich Low_complexity Low_complexity 4 58 0 736 233 301 8 chr9 35011397 35011779 -82850848 + L2 LINE L2 2819 3312 -1 1386 381 0 26 chr9 35012401 35012711 -82849916 + AluSx SINE Alu 1 302 -10 2120 120 36 0 chr9 35012711 35013045 -82849582 + L1MB3 LINE L1 5665 6010 -173 348 70 53 18 chr9 35013045 35013102 -82849525 + MER57A LTR ERV1 7 65 -338 2291 108 3 0 chr9 35013103 35013398 -82849229 + AluSx SINE Alu 1 296 -16 239 0 32 0 chr9 35013402 35013433 -82849194 + (TA)n Simple_repeat Simple_repeat 2 33 0 994 158 12 12 chr9 35013687 35013852 -82848775 - AluSg/x SINE Alu -12 300 136 2506 80 0 0 chr9 35013853 35014152 -82848475 - AluSc SINE Alu -10 299 1 330 298 7 21 chr9 35014167 35014308 -82848319 - L1ME3 LINE L1 -295 5867 5729 719 263 11 0 chr9 35014440 35014615 -82848012 - MIR SINE MIR -4 258 82 399 269 70 12 chr9 35014638 35014809 -82847818 + L2 LINE L2 2318 2498 -816 300 310 83 39 chr9 35015112 35015341 -82847286 + L2 LINE L2 3025 3263 -9 511 188 88 33 chr9 35015645 35015847 -82846780 + MER106B DNA MER1_type 30 1059 0 391 264 68 27 chr9 35017956 35018104 -82844523 - MIR SINE MIR -70 192 39 187 273 85 79 chr9 35019683 35019848 -82842779 + L2 LINE L2 2682 2847 -467 719 243 78 10 chr9 35019874 35020080 -82842547 - MIR SINE MIR 0 262 43 1783 161 0 56 chr9 35020151 35020323 -82842304 - AluJb SINE Alu -7 305 158 2305 107 0 3 chr9 35020323 35020621 -82842006 - AluSx SINE Alu -11 301 5 1783 161 0 56 chr9 35020621 35020771 -82841856 - AluJb SINE Alu -154 158 1 675 154 112 0 chr9 35020771 35020940 -82841687 + Charlie5 DNA MER1_type 2437 2624 0 2313 103 30 0 chr9 35021051 35021352 -82841275 + AluSx SINE Alu 1 310 -2 2289 94 13 3 chr9 35022120 35022419 -82840208 + AluSg SINE Alu 1 302 -8 390 208 115 49 chr9 35022550 35022733 -82839894 + MER102b DNA MER1_type 147 341 0 227 276 126 0 chr9 35022894 35022981 -82839646 - L3 LINE CR1 -550 1027 930 320 305 42 0 chr9 35023095 35023190 -82839437 - MIR SINE MIR -56 206 108 2062 120 50 0 chr9 35023322 35023605 -82839022 + AluSx SINE Alu 1 297 -15 733 251 62 19 chr9 35023605 35023816 -82838811 + MIR SINE MIR 29 248 -14 2050 146 0 0 chr9 35024236 35024530 -82838097 + AluSx SINE Alu 1 294 -18 237 300 113 0 chr9 35024541 35024621 -82838006 - MIR SINE MIR -149 113 25 265 360 18 0 chr9 35024635 35024746 -82837881 - MIR SINE MIR -65 143 31 625 289 261 11 chr9 35024982 35025706 -82836921 + L2 LINE L2 1842 2746 -568 2548 94 0 0 chr9 35025777 35026086 -82836541 - AluSq SINE Alu -2 311 3 186 133 0 0 chr9 35026859 35026889 -82835738 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 425 247 54 0 chr9 35027142 35027235 -82835392 + L2 LINE L2 3215 3312 -1 188 260 0 0 chr9 35027245 35027295 -82835332 + L2 LINE L2 3184 3233 -39 2407 88 3 3 chr9 35027446 35027751 -82834876 + AluSp SINE Alu 1 305 -8 1942 147 20 17 chr9 35028110 35028410 -82834217 + AluJb SINE Alu 1 301 -11 1089 147 0 23 chr9 35030251 35030428 -82832199 - AluJb SINE Alu -2 310 138 270 336 23 0 chr9 35030446 35030577 -82832050 + (CCAA)n Simple_repeat Simple_repeat 3 136 0 236 281 162 81 chr9 35030577 35030603 -82832024 - L2 LINE L2 0 3272 3250 1973 143 0 20 chr9 35030603 35030903 -82831724 + AluSx SINE Alu 1 294 -18 236 281 162 81 chr9 35030903 35031061 -82831566 - L2 LINE L2 -22 3250 3073 343 332 70 64 chr9 35031465 35031805 -82830822 - L1MEd LINE L1 -4971 1148 797 204 97 0 0 chr9 35031910 35031941 -82830686 + (CA)n Simple_repeat Simple_repeat 2 32 0 627 118 0 0 chr9 35031956 35032049 -82830578 - AluS SINE Alu -219 94 2 405 94 62 0 chr9 35032049 35032113 -82830514 + MSTB LTR MaLR 359 426 0 2914 211 63 20 chr9 35032115 35032944 -82829683 + L1MC4a LINE L1 6944 7807 -1 514 148 61 31 chr9 35032963 35033107 -82829520 + L1MA9 LINE L1 6158 6290 -1 23 54 0 0 chr9 35033109 35033146 -82829481 + AT_rich Low_complexity Low_complexity 1 37 0 284 283 85 9 chr9 35033290 35033396 -82829231 + MIR3 SINE MIR 95 208 0 2484 103 0 0 chr9 35033564 35033876 -82828751 - AluSx SINE Alu 0 312 1 2104 116 0 30 chr9 35034998 35035299 -82827328 - AluJo SINE Alu -20 292 1 2337 150 46 9 chr9 35035304 35035757 -82826870 - L1MB3 LINE L1 0 6183 5714 1155 154 50 141 chr9 35036418 35036815 -82825812 + MLT1A1 LTR MaLR 1 361 -4 181 336 9 73 chr9 35036926 35037036 -82825591 - L2 LINE L2 -8 3305 3203 271 262 12 60 chr9 35037171 35037255 -82825372 + L2 LINE L2 3193 3272 0 612 213 138 31 chr9 35037370 35037530 -82825097 + MER20 DNA MER1_type 40 216 -3 205 275 14 29 chr9 35037633 35037702 -82824925 - L2 LINE L2 0 3313 3246 1826 163 14 0 chr9 35037702 35037997 -82824630 - AluJo SINE Alu -13 299 1 2130 110 62 0 chr9 35038323 35038614 -82824013 + AluSp SINE Alu 1 309 -4 1176 130 25 0 chr9 35039407 35039569 -82823058 - AluSg/x SINE Alu -18 292 127 290 326 137 13 chr9 35039694 35039921 -82822706 - L2 LINE L2 -814 2500 2246 452 259 146 69 chr9 35039964 35040293 -82822334 - L2 LINE L2 -74 3239 2857 2060 114 0 81 chr9 35040293 35040625 -82822002 + AluSx SINE Alu 1 305 -7 452 259 146 69 chr9 35040625 35040724 -82821903 - L2 LINE L2 -456 2857 2767 255 125 0 0 chr9 35041469 35041509 -82821118 + (CA)n Simple_repeat Simple_repeat 1 40 0 267 306 45 8 chr9 35041936 35042070 -82820557 - MIR3 SINE MIR -69 139 1 2193 102 14 7 chr9 35043520 35043813 -82818814 - AluSx SINE Alu -17 295 1 212 294 28 46 chr9 35044366 35044475 -82818152 - L2 LINE L2 -493 2821 2715 310 344 156 33 chr9 35045116 35045482 -82817145 + HAL1 LINE L1 882 1292 -1215 180 0 0 0 chr9 35045630 35045650 -82816977 + (TA)n Simple_repeat Simple_repeat 1 20 0 1356 167 5 14 chr9 35045721 35045943 -82816684 - AluJo SINE Alu -92 220 1 4578 175 14 3 chr9 35045943 35046833 -82815794 - L1 LINE L1 -815 5331 4433 1275 113 15 49 chr9 35046833 35046866 -82815761 + AluY SINE Alu 101 134 -177 2619 61 0 6 chr9 35046866 35047177 -82815450 + AluY SINE Alu 1 309 -2 1275 113 15 49 chr9 35047177 35047347 -82815280 + AluY SINE Alu 134 297 -14 2085 112 0 33 chr9 35047488 35047791 -82814836 + AluSc SINE Alu 1 293 -16 2213 94 0 17 chr9 35047797 35048119 -82814508 + AluSx SINE Alu 3 319 0 678 196 49 98 chr9 35048168 35048372 -82814255 - AluJo SINE Alu -117 195 2 481 97 43 11 chr9 35048374 35048467 -82814160 - LTR23 LTR ERV1 -132 305 210 1351 101 0 6 chr9 35048472 35048651 -82813976 - AluSg/x SINE Alu -6 304 127 216 0 0 0 chr9 35048854 35048878 -82813749 + (CA)n Simple_repeat Simple_repeat 2 25 0 1772 173 0 26 chr9 35049909 35050215 -82812412 - AluJo SINE Alu -14 298 1 186 43 0 0 chr9 35050219 35050242 -82812385 + (TG)n Simple_repeat Simple_repeat 1 23 0 2187 107 10 0 chr9 35050310 35050601 -82812026 - AluSg SINE Alu -16 294 1 1491 161 44 4 chr9 35050603 35050877 -82811750 - L1MB2 LINE L1 -42 6129 5845 1176 136 0 23 chr9 35050889 35051066 -82811561 - AluSq SINE Alu -10 303 131 1002 146 18 0 chr9 35051066 35051231 -82811396 - L1MB2 LINE L1 -347 5824 5657 1456 86 68 5 chr9 35051233 35051453 -82811174 - L1PA14 LINE L1 0 6161 5928 844 156 78 90 chr9 35051477 35051585 -82811042 + ORSL DNA AcHobo 23 131 -144 1986 154 3 0 chr9 35051585 35051883 -82810744 - AluSq SINE Alu -14 299 1 844 156 78 90 chr9 35051883 35052030 -82810597 + ORSL DNA AcHobo 131 275 0 2186 173 71 19 chr9 35052364 35052826 -82809801 + MER66B LTR ERV1 1 486 0 1738 99 0 0 chr9 35052854 35053077 -82809550 - AluSg/x SINE Alu -14 296 74 23 0 0 0 chr9 35053080 35053103 -82809524 + AT_rich Low_complexity Low_complexity 1 23 0 451 220 105 43 chr9 35053284 35053493 -82809134 - L1MC5 LINE L1 -386 7575 7354 1628 171 68 10 chr9 35053502 35053637 -82808990 + AluJb SINE Alu 1 127 -185 2513 62 0 0 chr9 35053637 35053929 -82808698 + AluY SINE Alu 2 293 -18 1628 171 68 10 chr9 35053929 35054086 -82808541 + AluJb SINE Alu 127 310 -2 2170 135 0 0 chr9 35054119 35054415 -82808212 + AluSx SINE Alu 1 296 -16 2256 110 0 13 chr9 35054417 35054727 -82807900 + AluSx SINE Alu 1 306 -6 2299 81 0 3 chr9 35054746 35055068 -82807559 - AluY SINE Alu 0 321 1 1737 130 72 0 chr9 35055072 35055349 -82807278 - AluJo SINE Alu -15 297 1 386 265 88 24 chr9 35055878 35056048 -82806579 + MIR SINE MIR 13 193 -69 670 180 16 8 chr9 35056887 35057015 -82805612 - AluJo SINE Alu -171 141 13 1962 130 0 11 chr9 35057052 35057336 -82805291 - AluSx SINE Alu -31 281 1 213 60 20 40 chr9 35057516 35057566 -82805061 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 302 278 150 72 chr9 35058053 35058387 -82804240 + L2 LINE L2 2862 3221 -51 1804 125 114 0 chr9 35058458 35058738 -82803889 - AluSq SINE Alu 0 313 2 419 137 39 108 chr9 35058937 35058999 -82803628 - MER97c DNA MER1_type? -918 172 118 2137 41 107 7 chr9 35058999 35059270 -82803357 - AluY SINE Alu -13 298 1 419 137 39 108 chr9 35059270 35059309 -82803318 - MER97c DNA MER1_type? -972 118 78 278 149 164 30 chr9 35059314 35059381 -82803246 + U2 snRNA snRNA 1 76 -112 * 315 196 11 54 chr9 35059345 35059437 -82803190 - MER97b DNA MER1_type? -963 90 3 924 118 0 0 chr9 35060239 35060358 -82802269 - AluSq/x SINE Alu -194 119 1 390 265 88 24 chr9 35063618 35063788 -82798839 - MIR SINE MIR -69 193 13 268 130 19 19 chr9 35064317 35064371 -82798256 + Alu SINE Alu 1 54 -247 902 173 6 46 chr9 35064668 35064841 -82797786 + FRAM SINE Alu 1 166 0 238 242 45 15 chr9 35065702 35065768 -82796859 - L2 LINE L2 -6 3307 3240 256 324 97 14 chr9 35066036 35066181 -82796446 - MIR SINE MIR 0 262 106 238 302 0 0 chr9 35066288 35066351 -82796276 + MIR SINE MIR 68 130 -132 489 227 114 0 chr9 35066528 35066660 -82795967 + MIR SINE MIR 90 236 -26 21 0 0 0 chr9 35066830 35066851 -82795776 + AT_rich Low_complexity Low_complexity 1 21 0 1921 111 61 14 chr9 35067342 35067621 -82795006 + AluSg SINE Alu 2 293 -17 189 68 68 0 chr9 35068415 35068459 -82794168 + (TA)n Simple_repeat Simple_repeat 1 47 0 337 233 23 12 chr9 35068460 35068546 -82794081 - L1MC4 LINE L1 -1339 6703 6617 2175 117 3 3 chr9 35068942 35069240 -82793387 + AluSx SINE Alu 1 298 -14 323 183 0 14 chr9 35069241 35069312 -82793315 + MER53 DNA DNA 120 189 0 2593 68 0 0 chr9 35069353 35069660 -82792967 + AluY SINE Alu 1 307 -4 2272 121 0 3 chr9 35070191 35070504 -82792123 + AluSq SINE Alu 1 312 -1 2013 134 7 3 chr9 35070848 35071166 -82791461 + AluSx SINE Alu 1 319 0 1796 125 0 0 chr9 35071474 35071722 -82790905 + AluSx SINE Alu 40 287 -25 187 239 22 0 chr9 35071813 35071859 -82790768 - MIR3 SINE MIR -11 197 151 1929 142 0 10 chr9 35072002 35072297 -82790330 - AluSx SINE Alu -20 292 1 216 0 0 0 chr9 35072463 35072487 -82790140 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2073 154 0 0 chr9 35072517 35072822 -82789805 - AluSx SINE Alu -7 305 1 1165 127 0 0 chr9 35072862 35073019 -82789608 + FRAM SINE Alu 5 161 -15 2306 68 3 10 chr9 35073696 35073988 -82788639 - AluSc SINE Alu -19 290 1 429 197 0 0 chr9 35074315 35074391 -82788236 - L2 LINE L2 -10 3303 3228 21 0 0 0 chr9 35074479 35074500 -82788127 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 35075107 35075128 -82787499 + AT_rich Low_complexity Low_complexity 1 21 0 2339 101 0 3 chr9 35075447 35075812 -82786815 + AluSg SINE Alu 1 364 0 1603 192 3 31 chr9 35075832 35076150 -82786477 + AluJo SINE Alu 1 309 -3 1617 205 0 7 chr9 35076212 35076509 -82786118 + AluJb SINE Alu 1 295 -17 986 227 14 18 chr9 35076827 35077047 -82785580 - MER20 DNA MER1_type 0 219 1 2401 74 7 7 chr9 35077454 35077763 -82784864 + AluSc SINE Alu 1 309 0 2238 116 0 13 chr9 35078901 35079212 -82783415 + AluSg SINE Alu 1 307 -3 2107 130 3 0 chr9 35079478 35079770 -82782857 + AluSq SINE Alu 1 293 -20 876 121 0 16 chr9 35079841 35079965 -82782662 - FLAM_C SINE Alu -16 127 6 407 277 125 0 chr9 35080914 35081098 -82781529 - L1M4 LINE L1 -1890 4256 4050 44 46 0 0 chr9 35081137 35081202 -82781425 + AT_rich Low_complexity Low_complexity 1 65 0 1699 179 145 39 chr9 35081265 35081673 -82780954 - LTR32 LTR ERVL -7 464 14 302 213 64 85 chr9 35081766 35081800 -82780827 + L1ME LINE L1 5380 5413 -751 2043 141 3 0 chr9 35081800 35082097 -82780530 + AluSx SINE Alu 1 298 -14 302 213 64 85 chr9 35082097 35082203 -82780424 + L1ME LINE L1 5413 5517 -647 344 279 61 20 chr9 35082598 35082745 -82779882 - MIR SINE MIR -51 211 59 1606 177 45 10 chr9 35083738 35084026 -82778601 + AluJo SINE Alu 1 298 -14 6181 129 19 16 chr9 35084547 35085514 -82777113 - LTR5 LTR ERVK 0 969 1 24 32 0 0 chr9 35085902 35085933 -82776694 + AT_rich Low_complexity Low_complexity 1 31 0 303 296 15 12 chr9 35086265 35086420 -82776207 + L1M4 LINE L1 3767 3923 -2223 1566 160 31 35 chr9 35086485 35086772 -82775855 - AluJo SINE Alu -26 286 1 1998 153 3 6 chr9 35086845 35087158 -82775469 + AluSx SINE Alu 1 312 0 203 61 30 0 chr9 35087434 35087467 -82775160 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1878 125 84 0 chr9 35087589 35087876 -82774751 + AluSq SINE Alu 1 311 -2 2008 156 18 0 chr9 35087914 35088248 -82774379 - L1PB4 LINE L1 -2 6154 5815 266 189 27 0 chr9 35088252 35088326 -82774301 - L1PA16 LINE L1 -9 6156 6082 * 703 132 26 0 chr9 35088313 35088427 -82774200 - L1PB4 LINE L1 -327 5829 5713 404 158 44 70 chr9 35088435 35088549 -82774078 + L1PB4 LINE L1 5621 5731 -425 312 115 0 19 chr9 35088592 35088644 -82773983 + Alu SINE Alu 249 299 -2 1361 296 29 12 chr9 35088644 35089307 -82773320 + L1M4 LINE L1 3294 3967 -2179 621 239 72 61 chr9 35089304 35089418 -82773209 + L1MEc LINE L1 1905 2016 -4380 * 2441 84 0 0 chr9 35089418 35089716 -82772911 + AluY SINE Alu 1 298 -13 258 32 0 0 chr9 35089716 35089747 -82772880 + (TA)n Simple_repeat Simple_repeat 1 31 0 621 239 72 61 chr9 35089747 35089784 -82772843 + L1MEc LINE L1 2016 2051 -4345 2199 97 10 13 chr9 35089784 35090082 -82772545 - AluSx SINE Alu -15 297 1 621 239 72 61 chr9 35090082 35090288 -82772339 + L1MEc LINE L1 2051 2268 -4128 1389 192 7 46 chr9 35090300 35090581 -82772046 + AluJo SINE Alu 13 282 -30 621 286 70 36 chr9 35090584 35090940 -82771687 + L1MEc LINE L1 2211 2578 -3637 629 200 19 76 chr9 35090958 35091168 -82771459 + L1MEc LINE L1 2757 2954 -3261 3151 189 66 14 chr9 35091224 35091924 -82770703 - L1MB4 LINE L1 -40 6140 5405 2277 281 43 14 chr9 35091936 35092924 -82769703 - L1M4 LINE L1 -2647 3499 2483 578 190 121 46 chr9 35092910 35093084 -82769543 - L1MA9 LINE L1 0 6312 6126 * 34 42 0 0 chr9 35095404 35095452 -82767175 + AT_rich Low_complexity Low_complexity 1 48 0 27 29 0 0 chr9 35095483 35095517 -82767110 + AT_rich Low_complexity Low_complexity 1 34 0 454 278 62 6 chr9 35095772 35095948 -82766679 + L1ME LINE L1 5491 5676 -445 21 57 0 0 chr9 35096225 35096260 -82766367 + AT_rich Low_complexity Low_complexity 1 35 0 231 61 0 0 chr9 35096977 35097010 -82765617 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2281 91 0 0 chr9 35097012 35097297 -82765330 - AluSg SINE Alu -25 285 1 1516 208 3 7 chr9 35097695 35097989 -82764638 + AluJo SINE Alu 1 293 -19 533 295 111 43 chr9 35097991 35098229 -82764398 - MIR SINE MIR -8 254 4 244 336 46 30 chr9 35099858 35099989 -82762638 - MER5B DNA MER1_type 0 178 46 450 132 0 0 chr9 35100002 35100070 -82762557 + FRAM/FAM SINE Alu 1 68 -107 698 79 0 30 chr9 35100070 35100171 -82762456 + AluY SINE Alu 30 127 -184 189 0 0 0 chr9 35100205 35100226 -82762401 + (A)n Simple_repeat Simple_repeat 1 21 0 387 282 40 16 chr9 35101221 35101345 -82761282 + MER102a DNA MER1_type 203 329 -1 2284 110 0 0 chr9 35101630 35101929 -82760698 + AluY SINE Alu 1 299 -12 21 36 0 0 chr9 35102168 35102196 -82760431 + AT_rich Low_complexity Low_complexity 1 28 0 230 313 170 9 chr9 35102711 35102823 -82759804 - L2 LINE L2 0 3272 3143 408 88 0 0 chr9 35103543 35103600 -82759027 + (TTA)n Simple_repeat Simple_repeat 3 59 0 195 100 0 0 chr9 35103601 35103631 -82758996 + (TTG)n Simple_repeat Simple_repeat 2 31 0 352 206 243 0 chr9 35104505 35104612 -82758015 - AluJb SINE Alu -169 133 1 2274 77 0 7 chr9 35104952 35105264 -82757363 - AluY SINE Alu 0 310 1 308 88 47 53 chr9 35105343 35105514 -82757113 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 196 324 64 52 chr9 35106131 35106304 -82756323 - MIR SINE MIR -47 215 41 2258 114 0 0 chr9 35106692 35106989 -82755638 + AluSx SINE Alu 1 297 -15 40 21 0 0 chr9 35107025 35107072 -82755555 + AT_rich Low_complexity Low_complexity 1 47 0 2168 193 9 11 chr9 35107332 35107767 -82754860 - Tigger2a DNA MER2_type 0 434 1 1984 125 17 0 chr9 35108134 35108422 -82754205 + AluSx SINE Alu 1 293 -19 26 0 0 0 chr9 35108487 35108513 -82754114 + AT_rich Low_complexity Low_complexity 1 26 0 244 217 67 0 chr9 35109438 35109498 -82753129 - MLT1L LTR MaLR -6 609 546 450 284 118 48 chr9 35109543 35109730 -82752897 - MLT1L LTR MaLR -167 448 229 2061 142 0 0 chr9 35109730 35110025 -82752602 - AluSc SINE Alu -14 295 1 450 284 118 48 chr9 35110025 35110150 -82752477 - MLT1L LTR MaLR -386 229 114 835 195 0 161 chr9 35110326 35110587 -82752040 - MER58A DNA MER1_type -2 222 4 207 167 0 0 chr9 35110853 35110895 -82751732 + A-rich Low_complexity Low_complexity 1 42 0 1063 239 39 28 chr9 35111099 35111383 -82751244 + AluJo SINE Alu 2 288 -14 186 103 0 0 chr9 35111391 35111420 -82751207 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 193 287 147 39 chr9 35111646 35111775 -82750852 + L2 LINE L2 2912 3054 -218 205 196 0 22 chr9 35111803 35111849 -82750778 + L2 LINE L2 3264 3308 -5 1555 221 30 0 chr9 35112048 35112351 -82750276 - AluJo SINE Alu 0 312 1 2275 100 3 0 chr9 35114235 35114525 -82748102 + AluSp SINE Alu 3 293 -20 210 375 9 18 chr9 35116435 35116547 -82746080 + MIR3 SINE MIR 88 198 -10 191 164 0 148 chr9 35116998 35117059 -82745568 + MIR SINE MIR 175 226 -36 396 0 0 0 chr9 35117359 35117403 -82745224 + (TG)n Simple_repeat Simple_repeat 2 45 0 798 213 74 27 chr9 35118643 35118901 -82743726 + L1MB8 LINE L1 5903 6172 -6 410 306 54 0 chr9 35119685 35119832 -82742795 - L2 LINE L2 -438 2876 2722 2155 205 13 27 chr9 35120906 35121433 -82741194 - L1MB8 LINE L1 -6 6172 5653 220 341 47 0 chr9 35122201 35122286 -82740341 + MER91C DNA MER1_type 18 106 -34 821 263 30 0 chr9 35122520 35122718 -82739909 - MIR SINE MIR -24 238 35 1543 181 3 24 chr9 35122761 35123054 -82739573 + AluJo SINE Alu 6 292 -20 2091 137 20 0 chr9 35123473 35123779 -82738848 + AluSx SINE Alu 1 312 0 499 83 48 0 chr9 35123805 35123889 -82738738 + GA-rich Low_complexity Low_complexity 2 89 0 1003 139 0 7 chr9 35124198 35124349 -82738278 + AluSg SINE Alu 1 150 -160 592 248 32 50 chr9 35124349 35124631 -82737996 - LTR4 LTR ERV1 -2 594 318 22 0 0 0 chr9 35125852 35125874 -82736753 + AT_rich Low_complexity Low_complexity 1 22 0 2000 137 38 0 chr9 35125935 35126227 -82736400 - AluSg SINE Alu -6 304 2 369 129 0 14 chr9 35126503 35126573 -82736054 + MER34C LTR ERV1 423 491 -94 2088 144 6 3 chr9 35127184 35127496 -82735131 + AluSq SINE Alu 1 313 0 3141 121 29 0 chr9 35127884 35128371 -82734256 - L1PA10 LINE L1 -11 6157 5657 2105 229 21 81 chr9 35128434 35129233 -82733394 - MER4E LTR ERV1 -3 776 26 21 36 0 0 chr9 35129329 35129357 -82733270 + AT_rich Low_complexity Low_complexity 1 28 0 1008 221 75 12 chr9 35129467 35129788 -82732839 - L1MB8 LINE L1 -5 6173 5833 1920 156 63 14 chr9 35129788 35130217 -82732410 - MER61C LTR ERV1 0 434 1 2413 192 34 39 chr9 35130217 35130356 -82732271 - L1MB8 LINE L1 -342 5836 5698 2215 96 0 20 chr9 35130356 35130649 -82731978 + AluSg SINE Alu 1 287 -23 2413 192 34 39 chr9 35130649 35131584 -82731043 - L1MB8 LINE L1 -480 5698 4766 661 286 116 29 chr9 35132918 35133291 -82729336 - MLT1G1 LTR MaLR -34 561 45 1141 161 57 36 chr9 35133327 35133607 -82729020 - L1MA5 LINE L1 -6 6294 6009 1236 220 27 8 chr9 35133680 35133939 -82728688 - AluJo SINE Alu -48 264 1 2962 194 50 28 chr9 35133940 35135034 -82727593 - L1MA5 LINE L1 -354 5946 4808 1557 189 7 33 chr9 35135147 35135449 -82727178 - AluJo SINE Alu -17 295 2 406 231 0 0 chr9 35137896 35138000 -82724627 - L1MA9 LINE L1 -46 6266 6163 2180 124 10 0 chr9 35138939 35139237 -82723390 - AluSg SINE Alu -9 301 1 1271 119 0 0 chr9 35139429 35139597 -82723030 + AluSq SINE Alu 1 168 -145 2661 151 26 29 chr9 35139601 35140145 -82722482 + L1PA16 LINE L1 5624 6165 -1 2313 107 0 0 chr9 35140313 35140613 -82722014 - AluSc SINE Alu -9 300 1 24 32 0 0 chr9 35140891 35140922 -82721705 + AT_rich Low_complexity Low_complexity 1 31 0 238 343 111 57 chr9 35141287 35141796 -82720831 + L2 LINE L2 2735 3267 -5 821 188 41 9 chr9 35142433 35142651 -82719976 - L1MC4 LINE L1 -681 7361 7137 696 254 22 0 chr9 35142693 35142874 -82719753 - L1MC4 LINE L1 -1039 7003 6819 257 211 0 28 chr9 35143561 35143632 -82718995 - HSAT5 Satellite Satellite -1 85 17 283 243 14 0 chr9 35144397 35144467 -82718160 + (CA)n Simple_repeat Simple_repeat 2 72 0 1573 138 83 39 chr9 35144699 35145135 -82717492 - SN5 Other centromeric 0 455 1 690 211 96 20 chr9 35147056 35147255 -82715372 + MSTA LTR MaLR 155 368 -60 1387 121 26 0 chr9 35147284 35147516 -82715111 + MSTA-int LTR MaLR 13 250 -1401 1058 188 37 12 chr9 35147513 35147758 -82714869 + MSTA-int LTR MaLR 1401 1651 0 * 1400 222 27 29 chr9 35147758 35148132 -82714495 + MSTA LTR MaLR 1 373 -55 424 241 147 1 chr9 35148150 35148303 -82714324 - MST-int LTR MaLR -959 670 465 * 440 226 0 0 chr9 35148300 35148402 -82714225 + MSTA-int LTR MaLR 28 129 -1522 301 257 0 30 chr9 35148425 35148526 -82714101 + (GGGTG)n Simple_repeat Simple_repeat 3 100 0 273 130 22 0 chr9 35148533 35148579 -82714048 + MSTA-int LTR MaLR 921 967 -613 * 422 186 54 47 chr9 35148567 35148696 -82713931 - THE1-int LTR MaLR -389 1191 1062 1090 207 72 7 chr9 35148730 35149022 -82713605 + MSTA LTR MaLR 66 376 -52 462 221 148 10 chr9 35149038 35149190 -82713437 - MST-int LTR MaLR -963 661 466 5417 229 76 19 chr9 35149192 35150724 -82711903 + MSTA-int LTR MaLR 32 1651 0 259 220 88 11 chr9 35150726 35150817 -82711810 + MSTA LTR MaLR 3 100 -328 299 258 112 0 chr9 35150865 35150954 -82711673 + MSTA LTR MaLR 57 155 -273 1254 229 3 44 chr9 35150961 35151302 -82711325 + MSTA-int LTR MaLR 1318 1644 -7 360 188 20 20 chr9 35151312 35151413 -82711214 + MSTA LTR MaLR 4 104 -324 272 196 18 0 chr9 35151491 35151547 -82711080 + THE1-int LTR MaLR 911 967 -613 * 604 210 185 42 chr9 35151545 35151783 -82710844 - THE1-int LTR MaLR -402 1178 907 1081 197 82 24 chr9 35151787 35152081 -82710546 + MSTA LTR MaLR 66 376 -52 356 244 168 0 chr9 35152116 35152247 -82710380 - MST-int LTR MaLR -992 659 507 * 6358 215 53 17 chr9 35152244 35153809 -82708818 + MSTA-int LTR MaLR 27 1648 -3 372 237 10 0 chr9 35153811 35153908 -82708719 + MSTA LTR MaLR 3 100 -328 371 198 108 18 chr9 35153953 35154064 -82708563 + MSTA LTR MaLR 58 178 -250 1266 214 6 42 chr9 35154064 35154400 -82708227 + MSTA-int LTR MaLR 1328 1651 0 425 184 11 0 chr9 35154400 35154487 -82708140 + MSTA LTR MaLR 1 88 -340 272 196 18 0 chr9 35154593 35154649 -82707978 + THE1-int LTR MaLR 911 967 -613 * 840 201 189 20 chr9 35154637 35154881 -82707746 - THE1-int LTR MaLR -389 1191 907 865 250 73 8 chr9 35154908 35155168 -82707459 + MSTA LTR MaLR 98 374 -54 502 189 156 10 chr9 35155186 35155337 -82707290 - MST-int LTR MaLR -963 661 466 6254 211 50 24 chr9 35155339 35156918 -82705709 + MSTA-int LTR MaLR 32 1651 0 389 232 10 0 chr9 35156918 35157017 -82705610 + MSTA LTR MaLR 1 100 -328 308 203 41 106 chr9 35157039 35157162 -82705465 + MSTA LTR MaLR 57 171 -257 918 252 16 38 chr9 35157171 35157485 -82705142 + MSTA-int LTR MaLR 1345 1651 0 406 200 11 0 chr9 35157489 35157579 -82705048 + MSTA LTR MaLR 5 95 -333 747 198 194 22 chr9 35157732 35157964 -82704663 - THE1-int LTR MaLR -402 1178 907 916 243 56 10 chr9 35157968 35158256 -82704371 + MSTA LTR MaLR 76 376 -52 463 219 161 7 chr9 35158290 35158427 -82704200 - MST-int LTR MaLR -990 661 504 * 5976 215 56 30 chr9 35158422 35160005 -82702622 + MSTA-int LTR MaLR 28 1651 0 347 247 10 0 chr9 35160007 35160104 -82702523 + MSTA LTR MaLR 3 100 -328 329 262 107 0 chr9 35160149 35160252 -82702375 + MSTA LTR MaLR 58 171 -257 1089 258 0 32 chr9 35160264 35160578 -82702049 + MSTA-int LTR MaLR 1347 1650 -1 402 198 10 0 chr9 35160579 35160675 -82701952 + MSTA LTR MaLR 1 97 -331 280 177 65 0 chr9 35160766 35160828 -82701799 + THE1-int LTR MaLR 902 967 -613 * 898 176 189 21 chr9 35160826 35161059 -82701568 - THE1-int LTR MaLR -402 1178 907 978 224 86 10 chr9 35161065 35161355 -82701272 + MSTA LTR MaLR 65 376 -52 437 225 159 14 chr9 35161389 35161527 -82701100 - MST-int LTR MaLR -990 661 504 * 5733 232 49 30 chr9 35161522 35163116 -82699511 + MSTA-int LTR MaLR 28 1651 0 392 229 10 0 chr9 35163116 35163212 -82699415 + MSTA LTR MaLR 1 97 -331 353 232 104 16 chr9 35163263 35163388 -82699239 + MSTA LTR MaLR 60 195 -233 1071 194 83 17 chr9 35163391 35163679 -82698948 + MSTA-int LTR MaLR 1345 1651 0 435 191 32 0 chr9 35163679 35163773 -82698854 + MSTA LTR MaLR 1 97 -331 200 235 12 49 chr9 35163774 35163855 -82698772 + (GGGTG)n Simple_repeat Simple_repeat 5 82 0 255 152 39 18 chr9 35163870 35163926 -82698701 + MSTA-int LTR MaLR 921 967 -613 * 738 222 184 21 chr9 35163924 35164158 -82698469 - THE1-int LTR MaLR -402 1178 907 797 231 88 13 chr9 35164178 35164416 -82698211 + MSTA LTR MaLR 96 351 -77 412 241 165 8 chr9 35164456 35164589 -82698038 - MST-int LTR MaLR -994 657 504 * 5796 232 50 30 chr9 35164584 35166175 -82696452 + MSTA-int LTR MaLR 28 1651 0 325 229 83 21 chr9 35166269 35166365 -82696262 + MSTA LTR MaLR 58 159 -269 1453 200 0 41 chr9 35166375 35166720 -82695907 + MSTA-int LTR MaLR 1321 1651 0 456 189 11 0 chr9 35166720 35166815 -82695812 + MSTA LTR MaLR 1 96 -330 271 179 18 0 chr9 35166908 35166964 -82695663 + THE1-int LTR MaLR 911 967 -613 * 640 236 190 21 chr9 35166952 35167194 -82695433 - THE1-int LTR MaLR -389 1191 909 583 258 81 10 chr9 35167200 35167398 -82695229 + MSTA LTR MaLR 76 287 -141 286 195 20 27 chr9 35167388 35167474 -82695153 - HSAT5 Satellite Satellite -1 85 1 * 336 232 0 12 chr9 35167736 35167818 -82694809 - HSAT5 Satellite Satellite -3 83 3 450 116 6 24 chr9 35168046 35168140 -82694487 - HSAT5 Satellite Satellite -3 92 1 288 0 0 0 chr9 35169896 35169928 -82692699 + (TCTCCC)n Simple_repeat Simple_repeat 2 33 0 7669 44 2 33 chr9 35169928 35171515 -82691112 + SVA Other Other 1 1382 -4 517 295 118 31 chr9 35174334 35174622 -82688005 + L2 LINE L2 2998 3310 -3 1501 184 226 3 chr9 35174641 35174983 -82687644 + LTR46 LTR ERV1 1 436 -24 609 27 0 0 chr9 35174983 35175058 -82687569 + (TG)n Simple_repeat Simple_repeat 2 76 0 1501 184 226 3 chr9 35175058 35175091 -82687536 + LTR46 LTR ERV1 436 460 0 417 289 18 9 chr9 35175102 35175216 -82687411 - MIR SINE MIR -116 146 32 1928 162 30 0 chr9 35175396 35175699 -82686928 - AluSx SINE Alu 0 312 1 701 139 0 10 chr9 35175724 35175825 -82686802 - AluSg/x SINE Alu -18 294 195 1621 194 15 9 chr9 35175825 35176160 -82686467 + L1MA9 LINE L1 5819 6155 -157 973 103 0 7 chr9 35176164 35176279 -82686348 + AluSg/x SINE Alu 172 287 -25 751 122 61 14 chr9 35176279 35176426 -82686201 + L1MA9 LINE L1 6159 6312 0 973 103 0 7 chr9 35176426 35176446 -82686181 + AluSg/x SINE Alu 287 306 -6 2370 95 0 10 chr9 35176663 35176968 -82685659 - AluY SINE Alu -9 302 1 1383 281 77 47 chr9 35177289 35178345 -82684282 + L2 LINE L2 2224 3311 -2 1898 228 49 29 chr9 35178960 35179643 -82682984 + L1M3a LINE L1 771 1523 -4780 1646 231 109 62 chr9 35179671 35180599 -82682028 + L1ME3A LINE L1 4362 5332 -814 453 36 0 0 chr9 35180641 35180696 -82681931 + (CA)n Simple_repeat Simple_repeat 2 56 0 396 207 37 0 chr9 35180869 35180951 -82681676 + MLT1E2 LTR MaLR 106 190 -436 1296 215 146 7 chr9 35180971 35181376 -82681251 - L1ME LINE L1 -370 5794 5334 305 241 108 0 chr9 35182179 35182262 -82680365 - MIR SINE MIR -109 153 62 485 326 32 75 chr9 35184125 35184591 -82678036 - L1MEc LINE L1 -3875 2521 2076 1670 291 55 15 chr9 35185217 35185804 -82676823 - MLT2E LTR ERVL -18 610 1 370 236 0 0 chr9 35185812 35185884 -82676743 - Tigger5 DNA MER2_type 0 2323 2252 269 161 0 54 chr9 35185879 35185935 -82676692 + Tigger5 DNA MER2_type 2267 2319 -4 * 311 174 145 14 chr9 35185936 35186005 -82676622 - Tigger5 DNA MER2_type -2245 78 1 2336 79 3 3 chr9 35187065 35187356 -82675271 - AluSg SINE Alu -14 296 6 201 404 43 11 chr9 35188454 35188548 -82674079 + MIR3 SINE MIR 6 102 -106 732 266 95 61 chr9 35189144 35189791 -82672836 + L1ME3A LINE L1 5316 5954 -216 1010 224 9 9 chr9 35189841 35190051 -82672576 - MER63A DNA MER1_type 0 210 1 387 0 0 0 chr9 35191298 35191341 -82671286 + (CA)n Simple_repeat Simple_repeat 2 44 0 2487 62 0 0 chr9 35191392 35191681 -82670946 - AluY SINE Alu -22 289 1 2405 189 39 20 chr9 35192549 35193058 -82669569 - MER34 LTR ERV1 0 542 24 250 266 70 113 chr9 35193158 35193459 -82669168 - L2 LINE L2 -806 2508 2221 1332 108 0 5 chr9 35195028 35195213 -82667414 + AluSg/x SINE Alu 115 298 -14 2247 69 28 14 chr9 35195219 35195508 -82667119 + AluSx SINE Alu 5 297 -15 444 313 85 28 chr9 35195513 35195786 -82666841 + L1ME3A LINE L1 4497 4753 -1417 2639 48 0 3 chr9 35195786 35196096 -82666531 + AluY SINE Alu 1 309 -2 444 313 85 28 chr9 35196096 35197197 -82665430 + L1ME3A LINE L1 4753 5951 -219 1990 122 14 0 chr9 35197486 35197795 -82664832 + AluSx SINE Alu 1 312 0 5131 32 3 2 chr9 35197936 35198535 -82664092 + L1PA7 LINE L1 5545 6144 -10 253 302 7 43 chr9 35199918 35200057 -82662570 - L1ME1 LINE L1 -25 6141 6008 * 270 212 35 0 chr9 35200048 35200133 -82662494 - L1M4 LINE L1 -1637 4509 4422 414 225 50 33 chr9 35200626 35200746 -82661881 + L1MC1 LINE L1 6212 6333 0 216 184 0 20 chr9 35201187 35201236 -82661391 + (ATG)n Simple_repeat Simple_repeat 1 48 0 968 201 78 107 chr9 35201496 35202019 -82660608 + Charlie4a DNA MER1_type 1 508 0 306 169 0 0 chr9 35202173 35202238 -82660389 + CT-rich Low_complexity Low_complexity 2 66 0 1860 23 0 0 chr9 35202391 35202609 -82660018 + L1PA4 LINE L1 5930 6147 -8 663 289 95 9 chr9 35202830 35203062 -82659565 - MIR SINE MIR 0 262 11 204 280 0 0 chr9 35203368 35203418 -82659209 + MIR SINE MIR 96 145 -63 278 238 83 48 chr9 35204349 35204433 -82658194 - L2 LINE L2 -299 2973 2887 373 271 39 48 chr9 35205532 35205739 -82656888 + L1ME3A LINE L1 4890 5094 -1052 24 0 0 0 chr9 35205920 35205944 -82656683 + AT_rich Low_complexity Low_complexity 1 24 0 817 285 86 22 chr9 35206037 35206585 -82656042 + L1ME3A LINE L1 5369 5951 -219 412 361 31 21 chr9 35210679 35211061 -82651566 + L1MEc LINE L1 70 455 -5941 242 106 21 0 chr9 35211375 35211422 -82651205 + (TA)n Simple_repeat Simple_repeat 2 49 0 351 301 9 14 chr9 35211443 35211659 -82650968 + L1MEc LINE L1 718 932 -5273 1140 249 75 100 chr9 35211670 35212002 -82650625 + L1M4 LINE L1 3221 3560 -2586 9185 146 20 9 chr9 35212002 35214546 -82648081 + L1PA10 LINE L1 3581 6157 -11 1140 249 75 100 chr9 35214546 35215590 -82647037 + L1M4 LINE L1 3560 4563 -1583 596 259 26 22 chr9 35215585 35215817 -82646810 + L1M4 LINE L1 4901 5133 -1013 * 2580 35 0 16 chr9 35216654 35216970 -82645657 + AluY SINE Alu 1 311 0 257 262 54 40 chr9 35217027 35217176 -82645451 + L1MC5 LINE L1 7781 7931 -30 3363 121 40 9 chr9 35217272 35217849 -82644778 + LTR1B LTR ERV1 1 595 -231 589 195 0 16 chr9 35217862 35217990 -82644637 + LTR1B LTR ERV1 701 826 0 289 326 22 56 chr9 35220611 35220789 -82641838 + L2 LINE L2 2257 2428 -886 582 261 36 40 chr9 35220957 35221179 -82641448 - LTR16A LTR ERVL -116 334 114 199 388 20 13 chr9 35221227 35221379 -82641248 + L2 LINE L2 2544 2696 -618 3919 143 7 36 chr9 35221603 35222300 -82640327 - L1PA16 LINE L1 -3 6163 5487 322 145 0 0 chr9 35222466 35222528 -82640099 - L1PA15 LINE L1 -1 6164 6103 5816 168 21 7 chr9 35222544 35223777 -82638850 - L1PA15 LINE L1 -334 5831 4569 8894 106 18 5 chr9 35223777 35225047 -82637580 + HSMAR1 DNA Mariner 1 1287 0 5816 168 21 7 chr9 35225047 35225556 -82637071 - L1PA15 LINE L1 -1596 4569 4068 22 35 0 0 chr9 35229439 35229468 -82633159 + AT_rich Low_complexity Low_complexity 1 29 0 1117 116 111 0 chr9 35229496 35229685 -82632942 - MER2 DNA MER2_type -135 210 1 255 222 0 111 chr9 35231355 35231454 -82631173 - MIR SINE MIR 0 262 175 208 287 69 46 chr9 35231495 35231582 -82631045 + L2 LINE L2 2947 3035 -237 1790 163 48 15 chr9 35233868 35234200 -82628427 - MER2 DNA MER2_type -1 343 1 1263 255 30 34 chr9 35234968 35235191 -82627436 - L1MB8 LINE L1 -3 6175 5953 2111 93 61 4 chr9 35235191 35235471 -82627156 - AluY SINE Alu -15 296 1 1263 255 30 34 chr9 35235471 35235745 -82626882 - L1MB8 LINE L1 -225 5953 5680 37575 75 6 8 chr9 35235756 35236795 -82625832 + L1PA6 LINE L1 11 1051 -5103 10278 51 72 8 chr9 35236795 35238095 -82624532 + SVA Other Other 1 1383 -3 37575 75 6 8 chr9 35238095 35243214 -82619413 + L1PA6 LINE L1 1051 6154 0 1303 232 78 33 chr9 35243223 35244070 -82618557 - L1MB8 LINE L1 -481 5685 4806 21 71 0 0 chr9 35244070 35244112 -82618515 + AT_rich Low_complexity Low_complexity 1 42 0 252 0 0 0 chr9 35246735 35246763 -82615864 + (CCG)n Simple_repeat Simple_repeat 1 28 0 218 280 11 0 chr9 35246851 35246944 -82615683 + (CCG)n Simple_repeat Simple_repeat 1 94 0 22 35 0 0 chr9 35247037 35247066 -82615561 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 35247095 35247115 -82615512 + (CCGGG)n Simple_repeat Simple_repeat 4 23 0 4438 251 65 39 chr9 35247245 35248524 -82614103 - L1MB8 LINE L1 -1351 4795 3430 553 270 69 29 chr9 35248524 35248728 -82613899 + MER58C DNA MER1_type 3 214 -1 4438 251 65 39 chr9 35248728 35249727 -82612900 - L1MB8 LINE L1 -2716 3430 2458 1244 272 48 21 chr9 35249775 35250401 -82612226 + L1M4c LINE L1 1202 1989 -4564 1088 210 45 38 chr9 35250469 35250868 -82611759 + MLT2A2 LTR ERVL 134 546 -8 1285 174 4 0 chr9 35250868 35251109 -82611518 + L1MA8 LINE L1 5547 5788 -503 212 89 0 67 chr9 35251111 35251156 -82611471 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 2278 130 47 71 chr9 35251177 35251683 -82610944 + L1MA8 LINE L1 5793 6286 -5 24 0 0 0 chr9 35253315 35253339 -82609288 + AT_rich Low_complexity Low_complexity 1 24 0 194 350 68 68 chr9 35253365 35253571 -82609056 + L2 LINE L2 2804 3009 -263 290 273 73 18 chr9 35253693 35253803 -82608824 + L2 LINE L2 3193 3308 -5 793 222 6 0 chr9 35253907 35254074 -82608553 + MLT1D LTR MaLR 1 168 -337 197 359 61 85 chr9 35254103 35254315 -82608312 + L2 LINE L2 3028 3234 -38 200 288 96 27 chr9 35254328 35254401 -82608226 + L2 LINE L2 3193 3270 -43 1041 192 43 13 chr9 35254411 35254645 -82607982 + MLT1D LTR MaLR 179 419 -86 632 268 98 69 chr9 35254831 35255183 -82607444 + L1 LINE L1 3342 3713 -2433 2187 105 0 3 chr9 35255183 35255479 -82607148 + AluY SINE Alu 1 295 -16 632 268 98 69 chr9 35255479 35255607 -82607020 + L1 LINE L1 3713 3836 -2310 257 221 39 77 chr9 35256112 35256216 -82606411 + L2 LINE L2 3193 3292 -21 3713 155 56 3 chr9 35257085 35257764 -82604863 + MER72 LTR ERV1 8 722 0 327 287 98 14 chr9 35258288 35258431 -82604196 + MIR SINE MIR 91 245 -17 671 273 59 5 chr9 35258497 35258717 -82603910 - MIR SINE MIR -19 243 12 2700 153 103 0 chr9 35258729 35259205 -82603422 - LTR45 LTR ERV1 0 525 1 1409 128 200 8 chr9 35260745 35261010 -82601617 + AluSg1 SINE Alu 2 311 0 430 346 5 5 chr9 35261632 35261820 -82600807 - HERVE LTR ERV1 -526 7594 7407 604 358 38 16 chr9 35261951 35262401 -82600226 - HERVE LTR ERV1 -1964 5158 4699 304 299 46 31 chr9 35262824 35263154 -82599473 - HERVE LTR ERV1 -2923 4062 3936 257 299 0 0 chr9 35263397 35263474 -82599153 - HERVE LTR ERV1 -5771 2964 2888 2859 108 28 2 chr9 35264749 35265183 -82597444 - LTR45 LTR ERV1 0 525 81 4544 148 82 7 chr9 35265897 35266737 -82595890 - MER4D LTR ERV1 0 903 1 1071 230 88 12 chr9 35266891 35267230 -82595397 - MLT1A1 LTR MaLR 0 365 1 931 247 226 36 chr9 35267732 35268258 -82594369 - MLT1E2 LTR MaLR -28 626 1 2806 22 0 0 chr9 35269872 35270185 -82592442 - AluYb8 SINE Alu -5 313 1 2007 135 29 35 chr9 35270243 35270620 -82592007 - THE1C LTR MaLR 0 375 1 1797 209 12 25 chr9 35270691 35271081 -82591546 + MER74A LTR ERVL 24 408 -150 2586 182 59 16 chr9 35271081 35271659 -82590968 + MER73 LTR ERVL 1 603 -41 2065 139 17 3 chr9 35271668 35271970 -82590657 + AluSx SINE Alu 1 306 -6 770 209 0 0 chr9 35271975 35272114 -82590513 + MER74A LTR ERVL 420 558 0 263 383 0 0 chr9 35272865 35272959 -82589668 + L2 LINE L2 3174 3267 -5 1357 197 133 68 chr9 35273079 35273551 -82589076 + MLT1D LTR MaLR 3 505 0 3860 113 7 0 chr9 35273677 35274227 -82588400 + MER41A LTR ERV1 1 554 0 3863 126 12 31 chr9 35274312 35274962 -82587665 + MER41A-int LTR ERV1 1 638 -5308 * 10880 123 42 31 chr9 35274941 35275910 -82586717 + MER41A-int LTR ERV1 2606 3563 -2383 2434 74 0 19 chr9 35275910 35276222 -82586405 + AluY SINE Alu 1 306 -5 10880 123 42 31 chr9 35276222 35278407 -82584220 + MER41A-int LTR ERV1 3563 5944 -2 3787 91 45 0 chr9 35278407 35278937 -82583690 + MER41A LTR ERV1 1 554 0 438 284 163 5 chr9 35279192 35279382 -82583245 + MIR SINE MIR 10 229 -33 265 267 93 0 chr9 35279435 35279521 -82583106 - MIR SINE MIR -29 233 140 1405 176 18 15 chr9 35279521 35279794 -82582833 + MLT1B LTR MaLR 1 274 -116 297 288 0 0 chr9 35280149 35280229 -82582398 + MIR3 SINE MIR 117 196 -12 1138 188 66 0 chr9 35280643 35280946 -82581681 + MER33 DNA MER1_type 2 324 0 255 61 0 0 chr9 35281353 35281386 -82581241 + (CA)n Simple_repeat Simple_repeat 2 34 0 1238 199 119 47 chr9 35281627 35282030 -82580597 + MSTB1 LTR MaLR 1 432 0 480 335 62 33 chr9 35282437 35282709 -82579918 + L2 LINE L2 2571 2850 -464 319 276 112 0 chr9 35282794 35282892 -82579735 - L2 LINE L2 -8 3305 3197 1220 229 22 29 chr9 35283296 35283565 -82579062 + L1MEc LINE L1 2076 2342 -4054 1014 210 22 5 chr9 35283565 35283789 -82578838 - L1PA16 LINE L1 0 6166 5939 1220 229 22 29 chr9 35283789 35283930 -82578697 + L1MEc LINE L1 2342 2483 -3913 555 66 84 6 chr9 35283935 35284102 -82578525 + (TA)n Simple_repeat Simple_repeat 1 180 0 424 105 58 35 chr9 35284064 35284235 -82578392 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 * 437 82 101 0 chr9 35284258 35284416 -82578211 + (TA)n Simple_repeat Simple_repeat 1 174 0 239 96 109 13 chr9 35284444 35284600 -82578027 + (TA)n Simple_repeat Simple_repeat 2 172 0 439 98 86 0 chr9 35284614 35284777 -82577850 + (TA)n Simple_repeat Simple_repeat 1 177 0 822 240 22 47 chr9 35284777 35285098 -82577529 + L1MEc LINE L1 2441 2753 -3462 1234 171 68 4 chr9 35285343 35285404 -82577223 + AluJo SINE Alu 57 113 -199 241 26 53 0 chr9 35285404 35285442 -82577185 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 1234 171 68 4 chr9 35285442 35285614 -82577013 + AluJo SINE Alu 113 305 -7 536 259 87 47 chr9 35285629 35285950 -82576677 - MER46C DNA MER2_type -4 334 1 523 231 114 67 chr9 35285965 35286429 -82576198 - L1ME4a LINE L1 -23 6098 5613 1441 103 0 0 chr9 35286618 35286803 -82575824 - AluSg/x SINE Alu -9 303 119 1051 134 0 12 chr9 35286803 35286967 -82575660 + L1PA15 LINE L1 5991 6152 -13 341 231 217 35 chr9 35287017 35287160 -82575467 - MIR SINE MIR -21 241 73 607 262 94 29 chr9 35287882 35288233 -82574394 + HAL1b LINE L1 298 671 -677 925 255 81 23 chr9 35288325 35288748 -82573879 + MER113 DNA MER1_type? 34 481 -40 570 214 6 60 chr9 35288748 35288916 -82573711 + MLT1A1 LTR MaLR 1 159 -206 441 329 123 6 chr9 35292599 35292769 -82569858 + MIR SINE MIR 20 209 -53 1225 211 82 40 chr9 35293197 35293549 -82569078 + L1ME2 LINE L1 5710 6085 -79 837 213 34 19 chr9 35293549 35293756 -82568871 - MER63A DNA MER1_type 0 210 1 1225 211 82 40 chr9 35293756 35293830 -82568797 + L1ME2 LINE L1 6085 6154 -10 22 35 0 0 chr9 35294132 35294161 -82568466 + AT_rich Low_complexity Low_complexity 1 29 0 1756 145 64 3 chr9 35294170 35294452 -82568175 + AluJb SINE Alu 1 299 -13 315 0 0 0 chr9 35294452 35294487 -82568140 + (TA)n Simple_repeat Simple_repeat 1 35 0 1839 235 70 42 chr9 35294488 35295114 -82567513 - L1ME1 LINE L1 -23 6143 5536 2049 111 0 0 chr9 35295114 35295384 -82567243 + AluY SINE Alu 37 306 -5 14863 83 6 0 chr9 35295391 35298278 -82564349 + L1PA7 LINE L1 3262 6154 0 1839 235 70 42 chr9 35298278 35299198 -82563429 - L1ME1 LINE L1 -635 5531 4454 2412 64 7 3 chr9 35299291 35299587 -82563040 - AluY SINE Alu -14 297 1 1965 162 11 16 chr9 35299591 35299955 -82562672 + MLT2D LTR ERVL 7 368 -46 243 114 0 0 chr9 35300025 35300060 -82562567 + MLT2D LTR ERVL 478 512 -8 382 256 15 59 chr9 35300062 35300213 -82562414 - L1ME1 LINE L1 -1801 4345 4201 774 223 48 0 chr9 35300659 35300825 -82561802 + FAM SINE Alu 1 174 -1 1682 223 65 34 chr9 35302362 35302868 -82559759 - L1ME3A LINE L1 -23 6147 5626 1797 141 3 30 chr9 35303806 35304105 -82558522 + AluJo SINE Alu 21 311 -1 309 375 11 5 chr9 35304123 35304307 -82558320 + MIR SINE MIR 73 257 -5 9059 174 136 19 chr9 35304459 35306434 -82556193 + L1PBa LINE L1 6 2211 -4652 3590 91 9 30 chr9 35306434 35306905 -82555722 + L1PB1 LINE L1 5632 6092 -59 2447 74 3 0 chr9 35306905 35307203 -82555424 + AluY SINE Alu 1 299 -12 3590 91 9 30 chr9 35307203 35307259 -82555368 + L1PB1 LINE L1 6092 6148 -3 2433 91 7 0 chr9 35307284 35307593 -82555034 + AluSx SINE Alu 1 311 -1 1229 195 44 101 chr9 35308447 35308944 -82553683 + L1MEc LINE L1 767 1235 -5161 261 314 46 10 chr9 35309194 35309388 -82553239 + L1M4 LINE L1 3792 3992 -2154 1931 256 54 14 chr9 35309413 35310589 -82552038 + L1MEc LINE L1 35 1347 -5049 349 142 9 3 chr9 35310589 35310664 -82551963 - MLT2B1 LTR ERVL 0 520 368 23 33 0 0 chr9 35310667 35310697 -82551930 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr9 35310727 35310776 -82551851 + AT_rich Low_complexity Low_complexity 1 49 0 715 161 8 54 chr9 35310796 35310926 -82551701 - MLT2B1 LTR ERVL -40 480 357 783 216 57 5 chr9 35310944 35311030 -82551597 - Ricksha DNA DNA -810 444 349 13883 152 46 24 chr9 35311030 35311230 -82551397 - ERVL LTR ERVL -1 5763 5569 2003 145 0 10 chr9 35311230 35311527 -82551100 + AluJb SINE Alu 1 294 -18 13883 152 46 24 chr9 35311527 35313710 -82548917 - ERVL LTR ERVL -195 5569 3328 4347 124 22 13 chr9 35313712 35314051 -82548576 + L1PB1 LINE L1 5452 5787 -364 372 43 0 0 chr9 35314051 35314097 -82548530 + (TG)n Simple_repeat Simple_repeat 1 46 0 4347 124 22 13 chr9 35314097 35314450 -82548177 + L1PB1 LINE L1 5787 6150 -1 2984 184 25 11 chr9 35314455 35315068 -82547559 + L1 LINE L1 3777 4397 -1749 242 69 69 0 chr9 35315069 35315127 -82547500 + (TA)n Simple_repeat Simple_repeat 2 63 0 401 188 12 12 chr9 35315127 35315212 -82547415 + L1PB2 LINE L1 3931 4015 -2131 404 181 0 21 chr9 35315233 35315327 -82547300 + L1PB2 LINE L1 4424 4515 -1631 1149 79 7 0 chr9 35315342 35315482 -82547145 + AluSq SINE Alu 125 265 -48 302 222 0 0 chr9 35315522 35315585 -82547042 - L1MC4 LINE L1 -1339 6703 6641 471 78 0 0 chr9 35315585 35315649 -82546978 + (CA)n Simple_repeat Simple_repeat 1 64 0 5809 146 26 19 chr9 35315660 35317113 -82545514 + L1PB2 LINE L1 4493 5958 -193 2194 110 14 3 chr9 35317113 35317405 -82545222 + AluSc SINE Alu 2 296 -13 5809 146 26 19 chr9 35317405 35317594 -82545033 + L1PB2 LINE L1 5958 6144 -7 949 207 0 0 chr9 35317598 35317762 -82544865 + AluJb SINE Alu 121 284 -28 207 0 0 0 chr9 35317762 35317785 -82544842 + (CA)n Simple_repeat Simple_repeat 2 24 0 2168 112 3 3 chr9 35317869 35318173 -82544454 + AluSp SINE Alu 1 304 -9 4447 88 73 135 chr9 35318967 35320079 -82542548 - pTR5 LTR ERV1 0 2426 34 215 204 74 0 chr9 35320172 35320226 -82542401 + L2 LINE L2 3211 3268 -45 183 42 0 0 chr9 35320269 35320293 -82542334 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 231 146 0 0 chr9 35320733 35320774 -82541853 + (CGGGG)n Simple_repeat Simple_repeat 2 42 0 291 312 48 0 chr9 35323113 35323238 -82539389 - MIR SINE MIR -102 160 30 195 267 0 50 chr9 35323400 35323460 -82539167 - L3 LINE CR1 -1 1576 1520 521 265 37 42 chr9 35323904 35324093 -82538534 - MLT1J LTR MaLR -19 492 305 329 83 50 0 chr9 35324142 35324202 -82538425 + T-rich Low_complexity Low_complexity 5 67 0 2044 85 77 4 chr9 35324224 35324496 -82538131 - AluSg SINE Alu -18 292 1 25 0 0 0 chr9 35324504 35324529 -82538098 + AT_rich Low_complexity Low_complexity 1 25 0 351 222 35 154 chr9 35324530 35324674 -82537953 - MLT1L LTR MaLR -335 176 94 2226 103 0 7 chr9 35324674 35324965 -82537662 + AluSq SINE Alu 1 289 -24 351 222 35 154 chr9 35324965 35325050 -82537577 - MLT1L LTR MaLR -417 94 1 291 307 20 20 chr9 35325148 35325301 -82537326 - MER5A DNA MER1_type -36 153 1 649 251 94 39 chr9 35325479 35325786 -82536841 - HAL1 LINE L1 -111 2396 2073 231 86 0 0 chr9 35326037 35326072 -82536555 + MER69 DNA AcHobo 2384 2418 -108 458 183 10 48 chr9 35326115 35326219 -82536408 + MER69 DNA AcHobo 2411 2510 -16 1372 219 90 82 chr9 35326228 35327040 -82535587 - HAL1 LINE L1 -845 1662 845 322 305 48 0 chr9 35327771 35327876 -82534751 + L2 LINE L2 3153 3262 -10 194 311 189 0 chr9 35329146 35329268 -82533359 - L2 LINE L2 -195 3077 2933 547 255 48 81 chr9 35329618 35329928 -82532699 - L2 LINE L2 -829 2485 2186 452 327 14 6 chr9 35330528 35330589 -82532038 - MIR3 SINE MIR -21 187 128 2424 86 0 0 chr9 35330589 35330891 -82531736 + AluY SINE Alu 1 302 -9 452 327 14 6 chr9 35330891 35330995 -82531632 - MIR3 SINE MIR -80 128 20 1111 120 40 198 chr9 35331222 35331546 -82531081 - Tigger3(Golem) DNA MER2_type -2 3027 2755 2202 99 3 0 chr9 35331549 35331854 -82530773 + AluSp SINE Alu 1 306 0 1211 143 0 0 chr9 35331854 35332022 -82530605 + AluSg/x SINE Alu 132 299 -11 477 205 0 0 chr9 35332022 35332100 -82530527 - Tigger3(Golem) DNA MER2_type -2951 78 1 455 264 63 19 chr9 35333066 35333225 -82529402 - MIR SINE MIR -76 186 21 2655 37 3 0 chr9 35333542 35333842 -82528785 + AluY SINE Alu 1 301 -10 265 333 70 26 chr9 35333918 35334074 -82528553 + L2 LINE L2 2922 3084 -188 3967 154 82 41 chr9 35334238 35334378 -82528249 + L1MB7 LINE L1 4865 4998 -1186 2043 131 17 0 chr9 35334378 35334669 -82527958 + AluSx SINE Alu 1 296 -16 3967 154 82 41 chr9 35334669 35335267 -82527360 + L1MB7 LINE L1 4998 5570 -614 2562 206 109 30 chr9 35335267 35335946 -82526681 - MER44D DNA MER2_type 0 605 1 3967 154 82 41 chr9 35335946 35336109 -82526518 + L1MB7 LINE L1 5570 5725 -459 2302 99 7 0 chr9 35336109 35336412 -82526215 + AluSg SINE Alu 1 305 -5 2417 57 0 0 chr9 35336414 35336726 -82525901 + AluY SINE Alu 1 312 0 3967 154 82 41 chr9 35336726 35337079 -82525548 + L1MB7 LINE L1 5725 6159 -25 762 169 0 7 chr9 35337296 35337438 -82525189 + FLAM_C SINE Alu 2 142 -1 2204 149 15 35 chr9 35337488 35337664 -82524963 + MLT1B LTR MaLR 3 181 -209 2377 78 0 3 chr9 35337664 35337957 -82524670 + AluSq SINE Alu 1 292 -21 2204 149 15 35 chr9 35337957 35338176 -82524451 + MLT1B LTR MaLR 181 390 0 4474 168 43 34 chr9 35338176 35338320 -82524307 + MLT1B-int LTR MaLR 1 142 -1229 2286 94 19 10 chr9 35338320 35338627 -82524000 + AluSx SINE Alu 1 310 -2 4474 168 43 34 chr9 35338627 35338697 -82523930 + MLT1B-int LTR MaLR 142 210 -1161 2252 119 3 0 chr9 35338697 35339007 -82523620 + AluSx SINE Alu 1 311 -1 4474 168 43 34 chr9 35339007 35339666 -82522961 + MLT1B-int LTR MaLR 210 883 -488 312 333 9 0 chr9 35339727 35339832 -82522795 + MLT1B-int LTR MaLR 678 783 -952 2034 219 47 26 chr9 35339885 35340006 -82522621 + MLT1B-int LTR MaLR 895 1012 -359 1837 107 68 14 chr9 35340006 35340286 -82522341 + AluSg SINE Alu 1 295 -15 2034 219 47 26 chr9 35340286 35340629 -82521998 + MLT1B-int LTR MaLR 1012 1369 -2 1418 152 71 8 chr9 35340631 35340943 -82521684 + MLT1B LTR MaLR 1 381 -9 788 206 57 5 chr9 35340950 35341144 -82521483 + L1MB7 LINE L1 5776 5979 -205 405 222 22 0 chr9 35341144 35341234 -82521393 + MER20 DNA MER1_type 128 219 0 2272 95 0 29 chr9 35341428 35341743 -82520884 - AluSx SINE Alu 0 312 7 728 112 9 0 chr9 35341752 35341859 -82520768 - AluJb SINE Alu 0 312 205 354 135 0 0 chr9 35341859 35341911 -82520716 - AluSp SINE Alu -131 172 121 315 170 0 0 chr9 35341930 35341983 -82520644 - AluJb SINE Alu -169 133 81 2199 132 0 0 chr9 35341983 35342294 -82520333 - AluSx SINE Alu -1 311 1 465 262 28 14 chr9 35342429 35342574 -82520053 - MER20 DNA MER1_type 0 219 73 243 130 0 0 chr9 35342678 35342724 -82519903 - Alu SINE Alu 0 303 258 246 174 0 0 chr9 35343336 35343382 -82519245 + GA-rich Low_complexity Low_complexity 3 48 0 1844 129 16 43 chr9 35343759 35344062 -82518565 - AluJb SINE Alu -17 295 1 28 48 0 0 chr9 35344173 35344215 -82518412 + AT_rich Low_complexity Low_complexity 1 42 0 2249 97 7 7 chr9 35344826 35345115 -82517512 + AluSq SINE Alu 1 289 -24 362 303 53 11 chr9 35345212 35345400 -82517227 + L1ME2 LINE L1 59 254 -6605 1073 274 30 15 chr9 35345782 35345823 -82516804 + L1ME2 LINE L1 1475 1514 -5341 2296 103 3 3 chr9 35345823 35346125 -82516502 - AluSx SINE Alu -10 302 1 1073 274 30 15 chr9 35346125 35346496 -82516131 + L1ME2 LINE L1 1514 1889 -4966 1147 167 27 0 chr9 35346564 35346785 -82515842 + L1 LINE L1 4699 4925 -1221 673 289 119 30 chr9 35346812 35347524 -82515103 + L1ME2 LINE L1 1813 2637 -4501 2234 56 0 77 chr9 35347524 35347847 -82514780 + AluY SINE Alu 1 298 -13 673 289 119 30 chr9 35347847 35348117 -82514510 + L1ME2 LINE L1 2637 2882 -4256 1035 249 98 51 chr9 35348129 35348833 -82513794 + L1ME2 LINE L1 4606 5342 -1615 4830 223 32 33 chr9 35348987 35349709 -82512918 + L1PA12 LINE L1 2196 2917 -4667 2517 71 0 3 chr9 35349709 35350018 -82512609 + AluY SINE Alu 1 308 -3 4830 223 32 33 chr9 35350018 35351185 -82511442 + L1PA12 LINE L1 2917 4104 -3480 3548 136 82 3 chr9 35351185 35351779 -82510848 + L1PA16 LINE L1 5517 6157 -9 308 252 36 29 chr9 35351786 35351925 -82510702 + L1ME2 LINE L1 5344 5483 -1474 1827 179 42 10 chr9 35351925 35352486 -82510141 + MER76 LTR ERV 1 635 -53 502 33 0 0 chr9 35352498 35352559 -82510068 + L1PA16 LINE L1 6097 6157 -9 553 227 23 0 chr9 35352637 35352765 -82509862 + L1ME2 LINE L1 5480 5610 -1347 * 2422 238 57 21 chr9 35352763 35353477 -82509150 + L1ME2 LINE L1 6226 6965 -10 222 128 0 0 chr9 35353569 35353608 -82509019 + (TGGA)n Simple_repeat Simple_repeat 3 41 0 1319 86 0 0 chr9 35353857 35354032 -82508595 + AluY SINE Alu 128 302 -9 311 250 71 101 chr9 35354998 35355166 -82507461 + MIR SINE MIR 46 208 -54 2753 10 0 0 chr9 35355282 35355592 -82507035 - AluYa5 SINE Alu -1 310 1 1326 304 84 27 chr9 35357237 35357868 -82504759 + HERVL LTR ERVL 2563 3229 -2425 2862 176 11 0 chr9 35357904 35358375 -82504252 - MER70B LTR ERVL -102 476 1 394 273 9 27 chr9 35358789 35358899 -82503728 + HERVL LTR ERVL 3726 3833 -1821 728 291 102 62 chr9 35358915 35359669 -82502958 - L1MEd LINE L1 -5012 1107 324 391 298 51 56 chr9 35359909 35360124 -82502503 + MIR SINE MIR 2 215 -47 380 315 107 0 chr9 35360344 35360493 -82502134 - L1ME4a LINE L1 -193 5928 5764 412 267 81 90 chr9 35360629 35360962 -82501665 + L2 LINE L2 2984 3313 0 591 133 37 1 chr9 35361152 35361261 -82501366 + L1MA5A LINE L1 6006 6119 -184 203 269 30 0 chr9 35362022 35362089 -82500538 + (CAGG)n Simple_repeat Simple_repeat 4 72 0 418 268 91 77 chr9 35362708 35362928 -82499699 + MIR SINE MIR 21 243 -19 286 244 115 0 chr9 35363841 35363919 -82498708 + MIR SINE MIR 64 150 -112 609 217 19 76 chr9 35366067 35366224 -82496403 - MER5B DNA MER1_type -29 149 2 437 320 6 58 chr9 35367170 35367342 -82495285 + MER5B DNA MER1_type 16 178 0 812 186 28 0 chr9 35367356 35367501 -82495126 - MER5A DNA MER1_type -7 182 34 198 0 0 0 chr9 35371307 35371329 -82491298 + (CCA)n Simple_repeat Simple_repeat 1 22 0 231 207 0 0 chr9 35371329 35371387 -82491240 + A-rich Low_complexity Low_complexity 1 58 0 1407 117 108 29 chr9 35371689 35371929 -82490698 - AluSx SINE Alu -53 259 1 4447 129 9 10 chr9 35371954 35372653 -82489974 - L1PA16 LINE L1 -9 6157 5460 221 235 112 112 chr9 35373466 35373636 -82488991 + MIR SINE MIR 92 261 -1 297 231 115 0 chr9 35374534 35374612 -82488015 + MIR SINE MIR 64 150 -112 1717 186 113 52 chr9 35374665 35375126 -82487501 - L1MDa LINE L1 -4836 1808 1306 2244 99 0 0 chr9 35375126 35375428 -82487199 - AluSx SINE Alu -10 302 1 1717 186 113 52 chr9 35375428 35375525 -82487102 - L1MDa LINE L1 -5338 1306 1216 2410 177 17 15 chr9 35375533 35376014 -82486613 - L1MC1 LINE L1 -1 6332 5851 802 172 0 14 chr9 35376021 35376166 -82486461 + FLAM_C SINE Alu 1 143 0 1298 147 8 56 chr9 35376185 35376437 -82486190 - AluJo SINE Alu -30 282 43 1138 110 17 6 chr9 35376437 35376610 -82486017 - L1MC1 LINE L1 -510 5823 5649 297 244 25 101 chr9 35376607 35376726 -82485901 + L1MB2 LINE L1 6005 6114 -57 * 400 285 73 57 chr9 35376827 35377143 -82485484 + L1ME4a LINE L1 5578 5898 -223 252 0 0 0 chr9 35377144 35377172 -82485455 + (TG)n Simple_repeat Simple_repeat 2 29 0 371 289 154 7 chr9 35377295 35377444 -82485183 - MIR SINE MIR -8 254 84 957 264 45 32 chr9 35377619 35377929 -82484698 - L1MDa LINE L1 -6227 315 2 1956 134 0 0 chr9 35377943 35378254 -82484373 - AluSx SINE Alu 0 311 1 446 224 42 63 chr9 35378437 35378580 -82484047 + L1M4 LINE L1 483 622 -5920 520 319 94 51 chr9 35378602 35379154 -82483473 + L1M4 LINE L1 797 1372 -5262 361 359 24 12 chr9 35379169 35379336 -82483291 - L2 LINE L2 -180 3092 2924 438 296 107 28 chr9 35379464 35379717 -82482910 - L2 LINE L2 -553 2761 2489 3772 156 24 17 chr9 35379720 35380091 -82482536 + L1PA15 LINE L1 4675 5042 -1123 2089 113 0 0 chr9 35380091 35380382 -82482245 + AluSg SINE Alu 5 295 -15 3772 156 24 17 chr9 35380382 35381197 -82481430 + L1PA15 LINE L1 5042 5867 -298 1665 48 48 0 chr9 35381235 35381443 -82481184 + LTR12 LTR ERV1 493 710 -4 776 207 0 0 chr9 35381443 35381583 -82481044 + AluJb SINE Alu 153 292 -20 1705 114 0 46 chr9 35381584 35381864 -82480763 + AluSg SINE Alu 33 299 -11 5624 161 17 36 chr9 35381866 35382875 -82479752 + L1 LINE L1 3303 4289 -1857 1996 134 0 0 chr9 35382875 35383174 -82479453 + AluSx SINE Alu 1 299 -13 5624 161 17 36 chr9 35383174 35383316 -82479311 + L1 LINE L1 4289 4432 -1714 809 102 0 0 chr9 35383327 35383435 -82479192 - AluSq/x SINE Alu -204 108 1 1943 145 0 13 chr9 35383523 35383833 -82478794 + AluSx SINE Alu 1 306 -6 38 0 0 0 chr9 35383908 35383946 -82478681 + AT_rich Low_complexity Low_complexity 1 38 0 251 189 0 19 chr9 35384047 35384100 -82478527 - L2 LINE L2 0 3313 3262 284 296 0 0 chr9 35384251 35384322 -82478305 - L2 LINE L2 -16 3256 3186 3485 158 45 7 chr9 35384961 35385563 -82477064 + L1MC3 LINE L1 7136 7760 -25 1649 181 3 0 chr9 35385564 35385852 -82476775 + AluJb SINE Alu 1 289 -23 297 262 136 0 chr9 35385913 35386016 -82476611 - MIR SINE MIR -14 248 132 1087 149 0 0 chr9 35386028 35386203 -82476424 + AluSg/x SINE Alu 136 310 -2 237 330 0 0 chr9 35387080 35387168 -82475459 + G-rich Low_complexity Low_complexity 2 89 0 261 83 0 0 chr9 35387225 35387261 -82475366 + (TCCC)n Simple_repeat Simple_repeat 4 39 0 265 206 48 71 chr9 35387294 35387420 -82475207 + C-rich Low_complexity Low_complexity 6 128 0 219 36 0 0 chr9 35387828 35387856 -82474771 + (CCG)n Simple_repeat Simple_repeat 3 30 0 233 29 29 0 chr9 35388464 35388498 -82474129 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 189 0 0 0 chr9 35388628 35388649 -82473978 + (A)n Simple_repeat Simple_repeat 1 21 0 2270 77 0 0 chr9 35389737 35390034 -82472593 - AluSg SINE Alu -13 297 1 228 86 0 0 chr9 35390191 35390226 -82472401 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1393 180 14 32 chr9 35391272 35391555 -82471072 - AluJo SINE Alu -34 278 1 1959 106 10 27 chr9 35391718 35392019 -82470608 - AluSx SINE Alu -16 296 1 2247 84 3 3 chr9 35392192 35392490 -82470137 - AluSp SINE Alu -15 298 1 1524 148 44 37 chr9 35392525 35392823 -82469804 - AluJo SINE Alu -12 300 1 21 0 0 0 chr9 35392823 35392844 -82469783 + AT_rich Low_complexity Low_complexity 1 21 0 802 164 0 20 chr9 35392974 35392987 -82469640 - FLAM_C SINE Alu -169 143 131 2005 123 3 19 chr9 35392987 35393304 -82469323 - AluSx SINE Alu 0 312 1 802 164 0 20 chr9 35393304 35393436 -82469191 - FLAM_C SINE Alu -181 131 1 2225 95 0 0 chr9 35393479 35393774 -82468853 - AluSx SINE Alu -17 295 1 283 293 0 75 chr9 35394238 35394308 -82468319 + HsTC2 DNA Tc2 4 61 -1837 2048 112 0 38 chr9 35394308 35394453 -82468174 + AluSx SINE Alu 1 150 -162 2185 83 0 10 chr9 35394453 35394753 -82467874 + AluY SINE Alu 1 297 -14 2048 112 0 38 chr9 35394753 35394921 -82467706 + AluSx SINE Alu 150 302 -10 283 293 0 75 chr9 35394921 35394983 -82467644 + HsTC2 DNA Tc2 61 126 -1772 243 26 205 0 chr9 35395262 35395301 -82467326 + AluY SINE Alu 1 47 -86 2091 115 17 0 chr9 35395343 35395639 -82466988 - AluSx SINE Alu -11 301 1 2024 100 0 14 chr9 35395972 35396261 -82466366 + AluSx SINE Alu 15 299 -13 1957 100 3 48 chr9 35396515 35396825 -82465802 + AluY SINE Alu 1 296 -15 1693 124 6 76 chr9 35396898 35397213 -82465414 + AluSx SINE Alu 5 297 -15 21 0 0 0 chr9 35397229 35397250 -82465377 + AT_rich Low_complexity Low_complexity 1 21 0 855 198 5 53 chr9 35397268 35397455 -82465172 + AluJb SINE Alu 129 306 -6 1976 133 0 0 chr9 35397457 35397750 -82464877 + AluSq SINE Alu 1 293 -20 212 50 133 50 chr9 35397752 35397787 -82464840 + (TTAAA)n Simple_repeat Simple_repeat 4 35 -33 2151 122 0 0 chr9 35397787 35398098 -82464529 + AluSx SINE Alu 1 311 -1 212 50 133 50 chr9 35398098 35398122 -82464505 + (TTAAA)n Simple_repeat Simple_repeat 35 68 0 2001 113 14 0 chr9 35398122 35398413 -82464214 + AluSx SINE Alu 1 295 -17 2862 176 11 0 chr9 35399110 35399581 -82463046 + MER70B LTR ERVL 1 476 -102 1326 304 84 27 chr9 35399617 35400248 -82462379 - HERVL LTR ERVL -2425 3229 2563 2708 22 0 0 chr9 35401893 35402204 -82460423 + AluYa5 SINE Alu 1 311 0 311 250 71 101 chr9 35402325 35402493 -82460134 - MIR SINE MIR -54 208 46 2199 65 0 56 chr9 35403459 35403765 -82458862 - AluY SINE Alu -9 302 14 683 301 44 22 chr9 35403800 35404205 -82458422 - L1MEc LINE L1 -4593 1803 1390 305 238 0 0 chr9 35404352 35404415 -82458212 - MLT1H1 LTR MaLR -492 63 1 230 184 0 0 chr9 35404522 35404560 -82458067 + L2 LINE L2 3149 3186 -86 371 312 14 35 chr9 35404632 35404773 -82457854 + MIR3 SINE MIR 42 179 -29 1890 165 58 36 chr9 35404798 35405161 -82457466 - MLT1A2 LTR MaLR 0 374 4 559 196 5 162 chr9 35405542 35405746 -82456881 - MER5B DNA MER1_type 0 178 7 1838 192 104 72 chr9 35405848 35406113 -82456514 + MLT1D LTR MaLR 1 291 -214 2172 126 3 0 chr9 35406113 35406423 -82456204 + AluSq SINE Alu 3 313 0 1838 192 104 72 chr9 35406423 35406646 -82455981 + MLT1D LTR MaLR 291 505 0 2365 106 0 0 chr9 35407550 35407852 -82454775 - AluSq SINE Alu -11 302 1 2823 161 16 12 chr9 35408298 35408789 -82453838 + L1MB2 LINE L1 5677 6169 -2 337 374 96 14 chr9 35409791 35410206 -82452421 + L2 LINE L2 2521 2969 -345 514 213 8 71 chr9 35410267 35410394 -82452233 + L2 LINE L2 3179 3297 -16 213 39 0 0 chr9 35410636 35410662 -82451965 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 2380 116 0 0 chr9 35410953 35411264 -82451363 - AluSq SINE Alu -2 311 1 230 208 0 0 chr9 35411264 35411312 -82451315 - L1ME3A LINE L1 -224 5946 5899 2312 93 7 7 chr9 35411556 35411866 -82450761 + AluSg SINE Alu 1 310 0 303 203 27 0 chr9 35412717 35412791 -82449836 + L1MEc LINE L1 767 842 -5554 507 251 86 34 chr9 35412908 35413083 -82449544 - MIR SINE MIR -76 186 3 2458 68 0 0 chr9 35413384 35413676 -82448951 + AluSq SINE Alu 1 292 -21 1293 169 5 0 chr9 35413676 35413895 -82448732 + MLT1B LTR MaLR 171 390 0 4102 174 45 36 chr9 35413895 35414039 -82448588 + MLT1B-int LTR MaLR 1 142 -1229 2265 94 19 10 chr9 35414039 35414346 -82448281 + AluSx SINE Alu 1 310 -2 4102 174 45 36 chr9 35414346 35414416 -82448211 + MLT1B-int LTR MaLR 142 210 -1161 2230 119 3 0 chr9 35414416 35414726 -82447901 + AluSx SINE Alu 1 311 -1 4102 174 45 36 chr9 35414726 35415349 -82447278 + MLT1B-int LTR MaLR 210 847 -524 314 200 0 0 chr9 35415631 35415696 -82446931 + Alu SINE Alu 237 301 0 759 181 30 8 chr9 35415696 35415829 -82446798 - MER2 DNA MER2_type -209 136 1 256 225 0 45 chr9 35415841 35415930 -82446697 + (TA)n Simple_repeat Simple_repeat 1 85 0 419 236 28 66 chr9 35415980 35416008 -82446619 + HAL1 LINE L1 1155 1183 -1324 1282 174 47 109 chr9 35416008 35416128 -82446499 + AluJo SINE Alu 1 127 -175 1718 172 20 17 chr9 35416128 35416430 -82446197 + AluJo SINE Alu 1 303 -9 1282 174 47 109 chr9 35416430 35416631 -82445996 + AluJo SINE Alu 127 302 0 419 236 28 66 chr9 35416631 35416784 -82445843 + HAL1 LINE L1 1183 1329 -1178 815 252 104 0 chr9 35416794 35417064 -82445563 + HAL1 LINE L1 1395 1692 -815 2017 136 0 7 chr9 35417078 35417372 -82445255 - AluSx SINE Alu -19 293 2 346 98 115 16 chr9 35417372 35417433 -82445194 + L1MB8 LINE L1 6049 6115 -63 1324 117 0 75 chr9 35417434 35417648 -82444979 - Tigger3(Golem) DNA MER2_type -1 3028 2831 1354 86 6 6 chr9 35417649 35417824 -82444803 - AluSq SINE Alu -138 175 1 24 0 0 0 chr9 35417884 35417908 -82444719 + AT_rich Low_complexity Low_complexity 1 24 0 2316 106 6 0 chr9 35417908 35418219 -82444408 - AluSp SINE Alu 0 313 1 2184 119 0 0 chr9 35418222 35418517 -82444110 - AluSx SINE Alu -17 295 1 215 306 69 0 chr9 35418821 35418893 -82443734 + MIR SINE MIR 186 262 0 202 344 11 11 chr9 35418922 35419015 -82443612 + L2 LINE L2 2437 2529 -785 189 296 200 37 chr9 35419060 35419195 -82443432 + L2 LINE L2 2916 3072 -200 23 0 0 0 chr9 35419612 35419635 -82442992 + AT_rich Low_complexity Low_complexity 1 23 0 2141 106 0 7 chr9 35419791 35420084 -82442543 - AluY SINE Alu -18 293 3 381 258 210 56 chr9 35420508 35420588 -82442039 - MIR SINE MIR -19 243 177 1125 235 157 20 chr9 35420588 35420984 -82441643 - MLT1J2 LTR MaLR 0 450 1 381 258 210 56 chr9 35420984 35421116 -82441511 - MIR SINE MIR -85 177 1 2405 95 0 3 chr9 35422176 35422480 -82440147 - AluSq SINE Alu -9 304 2 1312 256 23 7 chr9 35422713 35423021 -82439606 + MLT1A1 LTR MaLR 1 313 -52 619 240 54 54 chr9 35423176 35423343 -82439284 + MIR SINE MIR 49 218 -44 2447 58 0 35 chr9 35423343 35423655 -82438972 + AluY SINE Alu 1 301 -10 619 240 54 54 chr9 35423655 35423691 -82438936 + MIR SINE MIR 217 252 -10 1053 179 10 46 chr9 35423878 35424073 -82438554 - MER5A DNA MER1_type -1 188 1 478 298 128 14 chr9 35424148 35424366 -82438261 - MIR SINE MIR -14 248 6 1222 193 119 28 chr9 35424538 35424823 -82437804 - AluJb SINE Alu -1 311 1 292 278 139 0 chr9 35425066 35425174 -82437453 - MLT1H LTR MaLR -327 222 100 357 143 0 0 chr9 35425174 35425228 -82437399 - Alu SINE Alu -254 48 1 20757 82 2 1 chr9 35425618 35428344 -82434283 + L1P LINE L1 11 2737 -3409 22 0 0 0 chr9 35428445 35428467 -82434160 + AT_rich Low_complexity Low_complexity 1 22 0 1002 114 42 6 chr9 35428537 35428696 -82433931 - AluSg/x SINE Alu -14 298 131 1929 132 9 41 chr9 35428696 35428880 -82433747 - AluSx SINE Alu -4 308 137 2072 131 0 3 chr9 35428880 35429177 -82433450 - AluSq SINE Alu -17 296 1 1929 132 9 41 chr9 35429177 35429310 -82433317 - AluSx SINE Alu -175 137 1 977 188 0 33 chr9 35429507 35429688 -82432939 + L1PB4 LINE L1 5974 6148 -8 2323 79 10 7 chr9 35429936 35430239 -82432388 - AluSp SINE Alu -9 304 1 1555 117 5 0 chr9 35430301 35430515 -82432112 - AluSg/x SINE Alu -13 299 85 2070 102 10 3 chr9 35430654 35430949 -82431678 + AluSx SINE Alu 5 301 -11 701 124 0 0 chr9 35431141 35431238 -82431389 + HY3 scRNA scRNA 1 97 -4 213 39 0 0 chr9 35431238 35431264 -82431363 + (A)n Simple_repeat Simple_repeat 1 26 0 833 165 8 8 chr9 35431323 35431456 -82431171 + FLAM_C SINE Alu 1 133 0 1673 111 0 0 chr9 35431581 35431806 -82430821 - AluSg/x SINE Alu -13 299 75 185 0 40 0 chr9 35431806 35431831 -82430796 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1999 130 0 7 chr9 35431832 35432124 -82430503 - AluY SINE Alu -21 290 1 2327 78 3 0 chr9 35432190 35432497 -82430130 + AluSp SINE Alu 1 308 0 2238 99 0 13 chr9 35432538 35432852 -82429775 + AluY SINE Alu 1 310 -1 299 173 40 0 chr9 35432961 35433036 -82429591 - L1ME1 LINE L1 -5 6161 6084 2102 119 0 7 chr9 35433234 35433528 -82429099 - AluSg SINE Alu -18 292 1 970 93 47 0 chr9 35433528 35433657 -82428970 - AluSq/x SINE Alu -177 135 1 2158 180 71 9 chr9 35433793 35434242 -82428385 - L1MB4 LINE L1 -1 6179 5703 448 262 0 78 chr9 35434243 35434353 -82428274 - L1M4c LINE L1 -6225 159 61 2130 106 6 37 chr9 35434353 35434674 -82427953 - AluSx SINE Alu -1 311 1 448 262 0 78 chr9 35434674 35434704 -82427923 - L1M4c LINE L1 -6323 61 30 303 225 53 119 chr9 35434742 35434798 -82427829 - L1ME4a LINE L1 -7 6114 6056 2318 102 3 0 chr9 35434798 35435103 -82427524 + AluSp SINE Alu 7 312 -1 303 225 53 119 chr9 35435103 35435197 -82427430 - L1ME4a LINE L1 -65 6056 5974 1967 156 3 0 chr9 35435309 35435610 -82427017 - AluSx SINE Alu -10 302 1 281 169 104 13 chr9 35435656 35435733 -82426894 - L1ME4a LINE L1 -2050 5758 5675 1877 162 0 3 chr9 35435763 35436053 -82426574 + AluJo SINE Alu 1 289 -23 367 165 118 63 chr9 35436054 35436181 -82426446 + Tigger3(Golem) DNA MER2_type 2395 2528 -501 1307 96 0 17 chr9 35436184 35436362 -82426265 + AluSq SINE Alu 1 175 -138 1369 113 0 70 chr9 35436363 35436576 -82426051 + Tigger3(Golem) DNA MER2_type 2841 3038 0 377 82 115 16 chr9 35436577 35436638 -82425989 - L1MB8 LINE L1 -63 6115 6049 2009 139 0 7 chr9 35436638 35436933 -82425694 + AluSx SINE Alu 2 294 -18 815 252 104 0 chr9 35436947 35437217 -82425410 - HAL1 LINE L1 -815 1692 1395 419 236 28 66 chr9 35437227 35437380 -82425247 - HAL1 LINE L1 -1178 1329 1183 1266 177 47 109 chr9 35437380 35437581 -82425046 - AluJo SINE Alu 0 302 127 1744 169 20 17 chr9 35437581 35437883 -82424744 - AluJo SINE Alu -9 303 1 1266 177 47 109 chr9 35437883 35438003 -82424624 - AluJo SINE Alu -175 127 1 419 236 28 66 chr9 35438003 35438031 -82424596 - HAL1 LINE L1 -1324 1183 1155 256 225 0 45 chr9 35438081 35438170 -82424457 + (TA)n Simple_repeat Simple_repeat 1 85 0 724 186 31 8 chr9 35438182 35438311 -82424316 + MER2 DNA MER2_type 1 132 -213 421 101 0 29 chr9 35438311 35438380 -82424247 - Alu SINE Alu -8 303 237 293 167 0 19 chr9 35438445 35438499 -82424128 + MER2 DNA MER2_type 268 320 -25 212 167 21 0 chr9 35438511 35438559 -82424068 + (TA)n Simple_repeat Simple_repeat 2 50 0 442 156 0 0 chr9 35438724 35438788 -82423839 + AluS SINE Alu 2 65 -253 2169 114 3 0 chr9 35438964 35439262 -82423365 + AluSx SINE Alu 1 299 -13 1731 175 42 82 chr9 35439264 35439402 -82423225 + MLT1A1 LTR MaLR 1 143 -222 2193 114 0 0 chr9 35439402 35439701 -82422926 - AluSq SINE Alu -14 299 1 1731 175 42 82 chr9 35439701 35439877 -82422750 + MLT1A1 LTR MaLR 143 300 -65 1847 162 7 14 chr9 35439877 35440173 -82422454 + AluJo SINE Alu 1 294 -18 1731 175 42 82 chr9 35440173 35440234 -82422393 + MLT1A1 LTR MaLR 300 362 -3 241 237 21 82 chr9 35440363 35440460 -82422167 - L1ME3A LINE L1 -106 6064 5974 1405 244 70 48 chr9 35440549 35441094 -82421533 - L1MC5 LINE L1 -449 7512 6956 1037 139 7 0 chr9 35441099 35441250 -82421377 - AluSq SINE Alu -23 290 139 2294 82 10 0 chr9 35441251 35441543 -82421084 - AluSx SINE Alu -17 295 1 794 244 53 51 chr9 35441548 35441924 -82420703 - L1MC5 LINE L1 -1064 6978 6589 6728 161 124 138 chr9 35442190 35442285 -82420342 - Cheshire DNA MER1_type 0 2420 2325 1546 169 15 8 chr9 35442285 35442546 -82420081 + AluJb SINE Alu 5 267 -45 6728 161 124 138 chr9 35442546 35443056 -82419571 - Cheshire DNA MER1_type -95 2325 1810 702 197 134 14 chr9 35443056 35443198 -82419429 + FRAM SINE Alu 1 159 -7 2330 105 0 3 chr9 35443206 35443510 -82419117 - AluSx SINE Alu -7 305 3 6728 161 124 138 chr9 35443510 35443642 -82418985 - Cheshire DNA MER1_type -617 1803 1671 2099 122 14 0 chr9 35443642 35443938 -82418689 - AluSx SINE Alu -12 300 1 6728 161 124 138 chr9 35443938 35444382 -82418245 - Cheshire DNA MER1_type -749 1671 1223 2183 88 11 0 chr9 35444382 35444667 -82417960 - AluSq SINE Alu -25 288 1 6728 161 124 138 chr9 35444667 35444933 -82417694 - Cheshire DNA MER1_type -1197 1223 955 2210 104 7 7 chr9 35444933 35445232 -82417395 - AluSx SINE Alu -13 299 1 6728 161 124 138 chr9 35445232 35445344 -82417283 - Cheshire DNA MER1_type -1465 955 843 555 71 0 0 chr9 35445344 35445414 -82417213 - AluSp/q SINE Alu -10 303 234 2426 64 0 7 chr9 35445414 35445711 -82416916 - AluY SINE Alu -16 295 1 6728 161 124 138 chr9 35445711 35445889 -82416738 - Cheshire DNA MER1_type -1576 844 665 2093 124 7 10 chr9 35445889 35446024 -82416603 + AluSx SINE Alu 1 135 -177 2173 73 63 0 chr9 35446024 35446310 -82416317 + AluY SINE Alu 1 304 -7 2093 124 7 10 chr9 35446310 35446472 -82416155 + AluSx SINE Alu 135 297 -15 6728 161 124 138 chr9 35446472 35446995 -82415632 - Cheshire DNA MER1_type -1755 665 106 757 271 127 48 chr9 35446997 35447247 -82415380 - L1MCc LINE L1 -4590 2532 2303 1981 132 10 10 chr9 35447247 35447558 -82415069 - AluSx SINE Alu -1 311 1 757 271 127 48 chr9 35447558 35447911 -82414716 - L1MCc LINE L1 -4819 2303 1979 2167 114 3 10 chr9 35447911 35448218 -82414409 - AluSq SINE Alu -8 305 1 757 271 127 48 chr9 35448218 35448667 -82413960 - L1MCc LINE L1 -5143 1979 1173 1985 136 3 10 chr9 35448769 35449064 -82413563 - AluSq SINE Alu -17 296 4 1363 189 97 37 chr9 35449226 35449336 -82413291 - Charlie1 DNA MER1_type -400 2361 2259 1745 180 7 0 chr9 35449336 35449630 -82412997 + AluSx SINE Alu 1 296 -16 1363 189 97 37 chr9 35449630 35449869 -82412758 - Charlie1 DNA MER1_type -502 2259 1991 2481 80 0 0 chr9 35449869 35450171 -82412456 + AluSp SINE Alu 1 302 -11 234 292 0 21 chr9 35450238 35450334 -82412293 + (TATATG)n Simple_repeat Simple_repeat 5 98 0 455 229 25 8 chr9 35450356 35450474 -82412153 + MIR SINE MIR 74 193 -69 1337 179 4 40 chr9 35450482 35450755 -82411872 + AluJb SINE Alu 19 281 -31 259 237 140 32 chr9 35450758 35450851 -82411776 - MIR SINE MIR -76 186 84 26 30 0 0 chr9 35452049 35452082 -82410545 + AT_rich Low_complexity Low_complexity 1 33 0 938 231 129 23 chr9 35452112 35452723 -82409904 - L1MC4 LINE L1 -144 7898 7022 30 59 0 0 chr9 35452773 35452824 -82409803 + AT_rich Low_complexity Low_complexity 1 51 0 1826 145 10 3 chr9 35452924 35453214 -82409413 + AluJo SINE Alu 1 292 -20 1929 143 45 0 chr9 35453633 35453919 -82408708 + AluSx SINE Alu 1 299 -13 2231 104 16 0 chr9 35454172 35454479 -82408148 - AluSp SINE Alu -1 312 1 302 44 0 0 chr9 35454671 35454716 -82407911 - AluJo SINE Alu 0 302 258 863 172 29 46 chr9 35454716 35454890 -82407737 - AluJo SINE Alu -141 171 1 283 259 211 58 chr9 35454914 35455217 -82407410 - L1M4 LINE L1 -3156 2990 2612 2179 114 0 7 chr9 35455217 35455516 -82407111 - AluSq SINE Alu -16 297 1 283 259 211 58 chr9 35455516 35455606 -82407021 - L1M4 LINE L1 -3534 2612 2537 1722 152 26 0 chr9 35455612 35455881 -82406746 - AluJb SINE Alu -11 301 26 1626 147 96 0 chr9 35456690 35456962 -82405665 + AluJb SINE Alu 1 298 -14 897 215 114 64 chr9 35457162 35457600 -82405027 - HAL1 LINE L1 -1 2506 2047 360 181 0 0 chr9 35457694 35457777 -82404850 + (TCCG)n Simple_repeat Simple_repeat 2 84 0 2333 98 3 0 chr9 35457783 35458090 -82404537 - AluSx SINE Alu -4 308 1 285 330 18 9 chr9 35458090 35458199 -82404428 - HAL1 LINE L1 -2394 113 4 2078 125 10 0 chr9 35458210 35458506 -82404121 - AluSx SINE Alu -9 303 5 1353 192 49 21 chr9 35459314 35459601 -82403026 - AluJb SINE Alu -17 295 1 2151 107 0 4 chr9 35459705 35460018 -82402609 - AluSg SINE Alu 0 312 1 22 0 0 0 chr9 35460028 35460050 -82402577 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr9 35460655 35460695 -82401932 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr9 35460694 35460718 -82401909 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1569 187 3 21 chr9 35460718 35461001 -82401626 - AluJo SINE Alu -34 278 1 21 0 0 0 chr9 35461001 35461022 -82401605 + AT_rich Low_complexity Low_complexity 1 21 0 1550 166 26 15 chr9 35461511 35461782 -82400845 + AluJo SINE Alu 1 274 -38 2345 43 0 7 chr9 35461832 35462153 -82400474 - AluY SINE Alu 0 319 1 1559 130 29 104 chr9 35462179 35462495 -82400132 + AluSx SINE Alu 1 292 -20 2320 107 0 3 chr9 35462737 35463046 -82399581 - AluSg SINE Alu -2 308 1 2025 102 44 14 chr9 35463817 35464112 -82398515 + AluSg SINE Alu 7 310 0 1964 103 40 30 chr9 35464135 35464435 -82398192 + AluSx SINE Alu 1 303 -9 1218 157 0 15 chr9 35464581 35464778 -82397849 - AluSg/x SINE Alu -15 295 102 1450 165 0 25 chr9 35464778 35465020 -82397607 - AluSx SINE Alu -76 236 1 1478 167 10 48 chr9 35465454 35465615 -82397012 - AluJo SINE Alu -25 287 140 2417 93 3 0 chr9 35465615 35465917 -82396710 - AluSq SINE Alu -10 303 1 1478 167 10 48 chr9 35465917 35466049 -82396578 - AluJo SINE Alu -172 140 5 660 224 63 87 chr9 35466075 35466106 -82396521 - HAL1 LINE L1 -142 2365 2335 2154 67 32 18 chr9 35466106 35466389 -82396238 - AluSg SINE Alu -23 287 1 660 224 63 87 chr9 35466389 35466707 -82395920 - HAL1 LINE L1 -172 2335 2025 2255 110 0 19 chr9 35466707 35467026 -82395601 - AluSq SINE Alu 0 313 1 660 224 63 87 chr9 35467026 35467100 -82395527 - HAL1 LINE L1 -482 2025 1951 2306 105 0 0 chr9 35467136 35467432 -82395195 - AluSx SINE Alu -16 296 1 729 279 22 26 chr9 35467465 35467694 -82394933 - L1ME3A LINE L1 -34 6136 5909 481 262 59 73 chr9 35467674 35467960 -82394667 - L1ME3A LINE L1 -823 5323 5042 * 664 106 96 0 chr9 35467986 35468080 -82394547 - Alu SINE Alu -206 104 2 1237 225 178 18 chr9 35468104 35468598 -82394029 - L1ME3A LINE L1 -270 5900 5328 435 102 0 0 chr9 35468598 35468657 -82393970 - AluYb8 SINE Alu -89 229 171 1034 145 0 0 chr9 35468659 35468804 -82393823 + AluSg/x SINE Alu 130 274 -38 640 239 39 7 chr9 35468876 35469031 -82393596 - LTR28 LTR ERV1 -467 553 394 597 230 169 11 chr9 35469068 35469268 -82393359 - LTR1 LTR ERV1 -559 226 33 1770 165 21 3 chr9 35469879 35470170 -82392457 + AluJb SINE Alu 1 296 -16 2165 91 3 14 chr9 35470317 35470643 -82391984 - AluSq SINE Alu 0 323 1 24 0 0 0 chr9 35470703 35470727 -82391900 + AT_rich Low_complexity Low_complexity 1 24 0 2299 109 6 0 chr9 35470727 35471038 -82391589 - AluSp SINE Alu 0 313 1 2184 119 0 0 chr9 35471041 35471336 -82391291 - AluSx SINE Alu -17 295 1 215 306 69 0 chr9 35471640 35471712 -82390915 + MIR SINE MIR 186 262 0 201 344 10 10 chr9 35471738 35471834 -82390793 + L2 LINE L2 2434 2529 -785 189 296 200 37 chr9 35471879 35472014 -82390613 + L2 LINE L2 2916 3072 -200 23 0 0 0 chr9 35472431 35472454 -82390173 + AT_rich Low_complexity Low_complexity 1 23 0 2158 105 0 7 chr9 35472610 35472905 -82389722 - AluY SINE Alu -18 293 1 21 0 0 0 chr9 35472965 35472986 -82389641 + AT_rich Low_complexity Low_complexity 1 21 0 1489 181 20 33 chr9 35472998 35473297 -82389330 + AluJb SINE Alu 1 295 -17 326 82 0 20 chr9 35473304 35473353 -82389274 - L1MC1 LINE L1 -19 6314 6267 2265 102 3 0 chr9 35473400 35473695 -82388932 + AluSp SINE Alu 3 298 -15 2236 121 0 0 chr9 35473786 35474091 -82388536 + AluSx SINE Alu 1 305 -7 1441 181 20 53 chr9 35474541 35474840 -82387787 - AluJb SINE Alu -13 289 1 2267 108 3 0 chr9 35474844 35475141 -82387486 - AluSx SINE Alu -14 298 1 223 239 30 0 chr9 35475404 35475471 -82387156 + (TA)n Simple_repeat Simple_repeat 1 69 0 1666 166 30 17 chr9 35475560 35475861 -82386766 - AluJo SINE Alu -7 305 1 782 75 0 0 chr9 35475911 35476005 -82386622 - AluSg SINE Alu -215 95 2 273 183 141 0 chr9 35476084 35476155 -82386472 - L1MC5 LINE L1 -272 7689 7609 239 189 0 75 chr9 35476181 35476234 -82386393 + Tigger7 DNA MER2_type 437 485 -2002 680 161 93 17 chr9 35476354 35476472 -82386155 + FLAM_A SINE Alu 1 127 -6 259 339 54 15 chr9 35476518 35476648 -82385979 - MIR SINE MIR -73 189 55 2273 91 21 0 chr9 35476973 35477258 -82385369 + AluSx SINE Alu 1 291 -21 2410 60 7 3 chr9 35477527 35477825 -82384802 + AluY SINE Alu 1 299 -12 1167 138 133 5 chr9 35477826 35478022 -82384605 + AluSg/x SINE Alu 73 293 -19 2323 63 0 3 chr9 35478074 35478359 -82384268 - AluY SINE Alu -11 300 17 312 138 0 0 chr9 35478690 35478755 -82383872 + (TC)n Simple_repeat Simple_repeat 1 65 0 1389 105 0 11 chr9 35478757 35478947 -82383680 - AluSq SINE Alu -121 192 5 535 213 63 0 chr9 35478975 35479102 -82383525 - MIR SINE MIR -30 232 98 1469 148 44 33 chr9 35479110 35479133 -82383494 + AluJb SINE Alu 8 29 -283 2520 139 49 45 chr9 35479133 35479228 -82383399 - MER83 LTR ERV1 0 448 355 1865 147 3 20 chr9 35479228 35479528 -82383099 + AluJb SINE Alu 1 295 -17 2520 139 49 45 chr9 35479528 35479878 -82382749 - MER83 LTR ERV1 -93 355 1 1469 148 44 33 chr9 35479878 35480125 -82382502 + AluJb SINE Alu 29 281 -31 180 111 0 0 chr9 35480126 35480153 -82382474 + (CAAT)n Simple_repeat Simple_repeat 2 28 0 359 236 57 38 chr9 35480155 35480261 -82382366 - MIR SINE MIR -152 110 3 1862 143 36 0 chr9 35480358 35480638 -82381989 - AluJb SINE Alu -22 290 1 1632 221 95 76 chr9 35480649 35480765 -82381862 - L1M4 LINE L1 -2962 3682 3570 1828 181 0 9 chr9 35480765 35481080 -82381547 - AluJb SINE Alu 0 312 1 1632 221 95 76 chr9 35481080 35481557 -82381070 - L1M4 LINE L1 -3074 3570 3066 1653 122 106 82 chr9 35481557 35481886 -82380741 + MER1B DNA MER1_type 1 337 0 1632 221 95 76 chr9 35481886 35482143 -82380484 - L1M4 LINE L1 -3578 3066 2815 * 2094 185 86 80 chr9 35482138 35482199 -82380428 - L1MD3 LINE L1 -166 7829 7770 1126 163 6 0 chr9 35482199 35482377 -82380250 - L1MB7 LINE L1 -19 6165 5987 2094 185 86 80 chr9 35482377 35482735 -82379892 - L1MD3 LINE L1 -225 7770 7416 418 211 33 11 chr9 35482735 35482825 -82379802 - MLT1F1 LTR MaLR -429 138 47 2094 185 86 80 chr9 35482825 35483176 -82379451 - L1MD3 LINE L1 -579 7416 6732 2090 113 10 0 chr9 35483184 35483476 -82379151 - AluSg SINE Alu -15 295 1 731 154 6 51 chr9 35483546 35483702 -82378925 - L1MB8 LINE L1 -5 6173 6025 2077 139 0 0 chr9 35483702 35483990 -82378637 + AluSx SINE Alu 2 289 -23 482 209 47 0 chr9 35483999 35484128 -82378499 - L1M4 LINE L1 -988 5158 5024 822 191 89 24 chr9 35484141 35484309 -82378318 - MER21B LTR ERV1 -138 725 547 2336 94 3 7 chr9 35484328 35484637 -82377990 + AluSc SINE Alu 1 308 -1 293 223 58 19 chr9 35484652 35484755 -82377872 - L1M4 LINE L1 -5116 1426 1320 1441 167 38 38 chr9 35484774 35485062 -82377565 + AluJb SINE Alu 1 288 -24 350 42 21 0 chr9 35485093 35485141 -82377486 + (TC)n Simple_repeat Simple_repeat 2 50 0 1712 165 24 0 chr9 35485167 35485464 -82377163 - AluJo SINE Alu 0 312 9 4041 229 57 51 chr9 35485474 35486733 -82375894 - L1M4 LINE L1 -5241 1301 35 524 221 35 73 chr9 35486749 35486999 -82375628 + L1ME4a LINE L1 5666 5913 -208 2541 67 0 0 chr9 35487269 35487568 -82375059 + AluSc SINE Alu 1 299 -10 2154 77 11 21 chr9 35488541 35488869 -82373758 - AluSg SINE Alu 0 325 1 935 294 6 6 chr9 35488872 35489192 -82373435 - L1M4 LINE L1 -3262 2884 2565 1988 145 20 0 chr9 35489406 35489710 -82372917 - AluSx SINE Alu -2 310 1 666 219 95 18 chr9 35490095 35490264 -82372363 - MLT1A2 LTR MaLR -37 337 156 1064 83 0 0 chr9 35490266 35490398 -82372229 - AluY SINE Alu -179 132 1 236 143 48 0 chr9 35490398 35490440 -82372187 - MLT1A2 LTR MaLR -204 161 118 1995 123 21 0 chr9 35490588 35490873 -82371754 - AluSg SINE Alu -18 292 2 1584 98 76 4 chr9 35491198 35491423 -82371204 + AluSg SINE Alu 1 241 -69 2189 100 0 0 chr9 35491424 35491703 -82370924 + AluSg SINE Alu 1 279 -31 2136 100 31 0 chr9 35491942 35492233 -82370394 - AluSg SINE Alu -10 300 1 458 111 0 0 chr9 35492343 35492406 -82370221 - AluS SINE Alu -255 63 1 2030 132 0 7 chr9 35492431 35492738 -82369889 + AluSx SINE Alu 1 305 0 417 161 0 0 chr9 35492896 35492952 -82369675 + AluS SINE Alu 2 57 -261 * 697 183 0 0 chr9 35492948 35493052 -82369575 + AluJb SINE Alu 131 234 -78 212 171 0 0 chr9 35493052 35493087 -82369540 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 395 129 0 14 chr9 35493454 35493524 -82369103 - L1MC1 LINE L1 0 6333 6265 205 280 194 21 chr9 35493825 35493918 -82368709 - MER5B DNA MER1_type -8 170 62 315 60 40 0 chr9 35493995 35494045 -82368582 - L1MB5 LINE L1 -8 6166 6115 604 174 22 0 chr9 35494046 35494138 -82368489 + FRAM SINE Alu 51 144 -32 195 42 0 0 chr9 35494146 35494170 -82368457 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 2637 195 13 11 chr9 35494171 35494291 -82368336 - L1MB5 LINE L1 -55 6119 6000 3411 214 93 87 chr9 35494291 35494694 -82367933 - L1MC4 LINE L1 -745 5401 5002 1851 146 14 0 chr9 35494694 35494998 -82367629 - AluSx SINE Alu 0 308 1 3411 214 93 87 chr9 35494998 35495047 -82367580 - L1MC4 LINE L1 -1144 5002 4955 260 75 0 50 chr9 35495047 35495087 -82367540 - Alu SINE Alu -265 38 1 3411 214 93 87 chr9 35495087 35495217 -82367410 - L1MC4 LINE L1 -1191 4955 4827 875 150 0 30 chr9 35495217 35495350 -82367277 + FLAM_C SINE Alu 1 129 -4 3411 214 93 87 chr9 35495350 35495499 -82367128 - L1MC4 LINE L1 -1319 4827 4680 1338 198 66 7 chr9 35495499 35495683 -82366944 - AluJo SINE Alu -7 305 96 1327 228 11 7 chr9 35495683 35495964 -82366663 + AluJb SINE Alu 1 282 -30 1338 198 66 7 chr9 35495964 35496067 -82366560 - AluJo SINE Alu -216 96 1 3411 214 93 87 chr9 35496067 35496836 -82365791 - L1MC4 LINE L1 -1466 4680 3917 2242 99 3 3 chr9 35496836 35497140 -82365487 - AluSx SINE Alu -8 304 1 3411 214 93 87 chr9 35497140 35497508 -82365119 - L1MC4 LINE L1 -2229 3917 4024 1975 121 7 26 chr9 35497508 35497814 -82364813 - AluY SINE Alu -10 301 2 3411 214 93 87 chr9 35497814 35497944 -82364683 - L1MC4 LINE L1 -2121 4025 3897 2524 39 0 0 chr9 35498092 35498377 -82364250 - AluY SINE Alu 0 311 27 2466 71 0 3 chr9 35498388 35498685 -82363942 - AluSp SINE Alu -17 296 1 2462 93 3 0 chr9 35498831 35499142 -82363485 - AluSp SINE Alu -1 312 1 2238 109 13 0 chr9 35499145 35499447 -82363180 - AluSg SINE Alu -4 306 1 38 22 0 0 chr9 35499516 35499561 -82363066 + AT_rich Low_complexity Low_complexity 1 45 0 21 23 0 47 chr9 35499655 35499678 -82362949 + AT_rich Low_complexity Low_complexity 1 23 -18 762 235 24 12 chr9 35499678 35499848 -82362779 + FAM SINE Alu 1 172 -3 21 23 0 47 chr9 35499848 35499867 -82362760 + AT_rich Low_complexity Low_complexity 23 41 0 2018 84 63 11 chr9 35500276 35500434 -82362193 - AluSx SINE Alu -13 299 151 2371 88 0 0 chr9 35500434 35500740 -82361887 - AluSg SINE Alu -4 306 1 2018 84 63 11 chr9 35500740 35500865 -82361762 - AluSx SINE Alu -161 151 1 21 0 0 0 chr9 35500943 35500964 -82361663 + AT_rich Low_complexity Low_complexity 1 21 0 514 214 38 0 chr9 35501622 35501753 -82360874 - L1MC3 LINE L1 -103 7682 7547 219 188 0 0 chr9 35501758 35501806 -82360821 + (TA)n Simple_repeat Simple_repeat 2 49 0 847 128 8 0 chr9 35501810 35501935 -82360692 - FLAM_C SINE Alu -17 126 1 380 90 0 15 chr9 35501977 35502044 -82360583 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 804 207 14 0 chr9 35502044 35502189 -82360438 - AluJb SINE Alu -31 281 135 2125 175 58 14 chr9 35502211 35502645 -82359982 - L1MC3 LINE L1 -314 7471 7019 561 240 276 16 chr9 35502649 35502903 -82359724 - Charlie2a DNA MER1_type -877 1985 1666 1456 211 16 16 chr9 35502976 35503279 -82359348 - AluJb SINE Alu -7 305 3 830 136 0 0 chr9 35503280 35503398 -82359229 - AluJb SINE Alu -175 137 20 272 237 13 13 chr9 35503434 35503510 -82359117 + MIR SINE MIR 146 221 -41 2433 75 3 0 chr9 35503885 35504180 -82358447 + AluSp SINE Alu 1 296 -17 203 298 0 0 chr9 35507069 35507116 -82355511 + (CGTG)n Simple_repeat Simple_repeat 4 50 0 2082 128 7 0 chr9 35507147 35507488 -82355139 - AluSp SINE Alu 0 344 2 1585 186 26 0 chr9 35507822 35508091 -82354536 + AluJo SINE Alu 1 276 -36 2165 83 29 14 chr9 35508883 35509192 -82353435 - AluSp SINE Alu 0 313 1 265 274 36 24 chr9 35509348 35509432 -82353195 - MLT1K LTR MaLR -329 259 175 648 210 57 17 chr9 35509848 35509921 -82352706 - MER3 DNA MER1_type 0 209 140 1038 169 0 6 chr9 35509921 35510102 -82352525 + FAM SINE Alu 5 175 0 648 210 57 17 chr9 35510102 35510204 -82352423 - MER3 DNA MER1_type -69 140 27 2033 126 10 10 chr9 35510272 35510573 -82352054 + AluSx SINE Alu 1 301 -11 439 200 0 0 chr9 35510593 35510668 -82351959 + AluJ/FLAM SINE Alu 1 75 -237 983 69 0 0 chr9 35510668 35510784 -82351843 - AluY SINE Alu -193 118 3 2267 108 0 13 chr9 35511208 35511514 -82351113 - AluSg SINE Alu -8 302 1 488 314 59 20 chr9 35511574 35511727 -82350900 + L2 LINE L2 3109 3267 -5 2218 121 7 3 chr9 35511888 35512193 -82350434 + AluSx SINE Alu 1 306 -6 2286 85 36 13 chr9 35512194 35512500 -82350127 + AluSp SINE Alu 1 313 0 22 0 0 0 chr9 35512815 35512837 -82349790 + AT_rich Low_complexity Low_complexity 1 22 0 2431 84 3 0 chr9 35513410 35513706 -82348921 + AluSx SINE Alu 1 297 -15 2313 113 0 25 chr9 35514008 35514326 -82348301 - AluSg SINE Alu 0 310 1 1628 194 18 11 chr9 35514350 35514629 -82347998 - AluJo SINE Alu -31 281 1 2168 109 27 7 chr9 35515621 35515915 -82346712 + AluSx SINE Alu 2 301 -11 1863 161 24 0 chr9 35515922 35516213 -82346414 + AluJo SINE Alu 1 298 -14 554 227 188 81 chr9 35516718 35517053 -82345574 - L2 LINE L2 -1 3312 2942 2219 97 0 0 chr9 35517128 35517407 -82345220 + AluSg SINE Alu 1 279 -31 266 231 0 0 chr9 35518219 35518284 -82344343 + (ATG)n Simple_repeat Simple_repeat 2 66 0 1267 72 179 0 chr9 35525883 35526078 -82336549 - MER30 DNA MER1_type 0 230 1 205 258 65 0 chr9 35527178 35527240 -82335387 - MIR3 SINE MIR -13 195 130 353 273 52 58 chr9 35530718 35530787 -82331840 + L1MC4a LINE L1 5260 5328 -2480 2258 124 0 6 chr9 35530787 35531102 -82331525 + AluSq SINE Alu 1 313 0 353 273 52 58 chr9 35531102 35531186 -82331441 + L1MC4a LINE L1 5328 5412 -2396 268 288 157 53 chr9 35531219 35531523 -82331104 + L1MC4a LINE L1 5468 5832 -1976 180 0 0 0 chr9 35531523 35531543 -82331084 + (CAA)n Simple_repeat Simple_repeat 2 21 0 268 288 157 53 chr9 35531543 35531672 -82330955 + L1MC4a LINE L1 5832 5946 -1862 2501 89 0 0 chr9 35531683 35531986 -82330641 + AluSg SINE Alu 1 303 -7 1153 197 57 9 chr9 35532151 35532379 -82330248 - MER8 DNA MER2_type 0 239 1 1379 131 181 23 chr9 35536375 35536634 -82325993 - AluSg SINE Alu 0 300 1 229 368 0 21 chr9 35536654 35536749 -82325878 - L3 LINE CR1 -494 1083 991 1260 180 10 0 chr9 35537141 35537347 -82325280 - AluJb SINE Alu -102 210 3 2159 102 3 31 chr9 35537357 35537651 -82324976 - AluSx SINE Alu -16 296 11 407 151 0 27 chr9 35537653 35537748 -82324879 + AluS SINE Alu 223 310 0 353 281 26 0 chr9 35537755 35537869 -82324758 + L1M4 LINE L1 3305 3421 -2725 668 215 7 0 chr9 35537885 35538020 -82324607 + FLAM_A SINE Alu 6 141 -1 507 295 0 6 chr9 35538024 35538180 -82324447 + L1M4 LINE L1 3454 3608 -2538 314 233 23 58 chr9 35538206 35538292 -82324335 + HAL1 LINE L1 2239 2321 -186 1906 153 24 0 chr9 35538396 35538690 -82323937 + AluSx SINE Alu 5 305 -7 1867 121 17 47 chr9 35538693 35538991 -82323636 + AluSq SINE Alu 1 289 -24 1681 187 16 3 chr9 35539056 35539361 -82323266 - AluJb SINE Alu -3 309 1 817 185 0 15 chr9 35539363 35539498 -82323129 - AluJo/FLAM SINE Alu -179 133 1 2470 74 3 0 chr9 35539582 35539881 -82322746 + AluSx SINE Alu 1 300 -12 2273 101 3 19 chr9 35540257 35540564 -82322063 - AluSx SINE Alu -8 304 3 358 174 51 2 chr9 35540621 35540800 -82321827 + AluJb SINE Alu 79 298 -4 294 83 0 0 chr9 35540836 35540872 -82321755 + (T)n Simple_repeat Simple_repeat 1 36 0 2107 90 65 0 chr9 35540972 35541250 -82321377 - AluSg SINE Alu -14 296 1 2264 93 4 0 chr9 35541250 35541527 -82321100 - AluSp SINE Alu -34 279 1 774 203 0 0 chr9 35541527 35541660 -82320967 - AluJo SINE Alu -177 135 3 23 0 0 0 chr9 35541662 35541685 -82320942 + AT_rich Low_complexity Low_complexity 1 23 0 867 170 7 7 chr9 35541715 35541862 -82320765 - LTR39 LTR ERV1 0 783 637 2336 73 0 14 chr9 35541863 35542193 -82320434 + AluY SINE Alu 1 326 0 1572 199 3 10 chr9 35542224 35542520 -82320107 - AluJb SINE Alu -18 294 1 1162 149 22 0 chr9 35542532 35542713 -82319914 - AluSg/x SINE Alu -2 308 124 2127 104 0 14 chr9 35542730 35543017 -82319610 - AluSg SINE Alu -27 283 1 1925 157 7 3 chr9 35543025 35543330 -82319297 - AluJb SINE Alu -6 306 1 2821 100 5 2 chr9 35543347 35543758 -82318869 - MER75 DNA T2_type 0 514 103 366 155 0 0 chr9 35543756 35543814 -82318813 - AluJ/FLAM SINE Alu -240 62 5 * 1722 87 0 0 chr9 35543881 35544089 -82318538 + AluSx SINE Alu 1 208 -104 316 51 0 0 chr9 35544137 35544176 -82318451 + Alu SINE Alu 6 44 -257 649 73 0 0 chr9 35544179 35544261 -82318366 + AluSp/q SINE Alu 213 294 -19 831 155 0 0 chr9 35544261 35544377 -82318250 - AluJo/FLAM SINE Alu -185 117 2 195 42 0 0 chr9 35544398 35544422 -82318205 + (TTTCC)n Simple_repeat Simple_repeat 2 25 0 2122 113 24 7 chr9 35544430 35544722 -82317905 - AluSx SINE Alu -15 297 1 1869 72 4 4 chr9 35545048 35545283 -82317344 - AluY SINE Alu -14 297 63 1990 129 7 42 chr9 35545372 35545514 -82317113 + AluSx SINE Alu 3 148 -164 2406 72 3 0 chr9 35545514 35545807 -82316820 + AluY SINE Alu 1 294 -17 1990 129 7 42 chr9 35545807 35545974 -82316653 + AluSx SINE Alu 148 301 -11 22 56 0 0 chr9 35546025 35546061 -82316566 + AT_rich Low_complexity Low_complexity 1 36 0 797 157 0 0 chr9 35546061 35546176 -82316451 - FLAM_C SINE Alu -15 118 4 993 194 18 6 chr9 35546289 35546459 -82316168 + FAM SINE Alu 2 173 -2 2353 79 0 10 chr9 35546619 35546924 -82315703 + AluY SINE Alu 1 302 -9 233 300 0 0 chr9 35547235 35547295 -82315332 - MIR SINE MIR -133 129 70 316 78 39 0 chr9 35547397 35547448 -82315179 + Alu SINE Alu 244 296 -5 1837 170 10 0 chr9 35547473 35547762 -82314865 + AluJb SINE Alu 17 308 -4 1229 64 0 0 chr9 35547767 35547924 -82314703 + L1PA5 LINE L1 5998 6154 0 2348 62 0 17 chr9 35547928 35548217 -82314410 + AluY SINE Alu 1 284 -27 180 0 0 0 chr9 35548221 35548241 -82314386 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1687 177 3 45 chr9 35548454 35548765 -82313862 + AluJo SINE Alu 1 298 -14 2360 155 22 50 chr9 35548988 35549446 -82313181 + MER65A LTR ERV1 1 445 0 2243 89 58 0 chr9 35549544 35549835 -82312792 - AluSg SINE Alu -2 308 1 2264 93 4 0 chr9 35549835 35550112 -82312515 - AluSp SINE Alu -34 279 1 774 203 0 0 chr9 35550112 35550245 -82312382 - AluJo SINE Alu -177 135 3 243 189 0 0 chr9 35550249 35550300 -82312327 - FLAM SINE Alu -1 132 82 867 170 7 7 chr9 35550300 35550447 -82312180 - LTR39 LTR ERV1 0 783 637 2429 63 0 17 chr9 35550448 35550747 -82311880 + AluY SINE Alu 1 294 -17 1147 138 6 0 chr9 35550747 35550914 -82311713 + AluSg/x SINE Alu 134 301 -11 22 56 0 0 chr9 35550965 35551001 -82311626 + AT_rich Low_complexity Low_complexity 1 36 0 797 157 0 0 chr9 35551001 35551116 -82311511 - FLAM_C SINE Alu -15 118 4 993 194 18 6 chr9 35551229 35551399 -82311228 + FAM SINE Alu 2 173 -2 2353 79 0 10 chr9 35551559 35551864 -82310763 + AluY SINE Alu 1 302 -9 236 300 0 0 chr9 35552175 35552235 -82310392 - MIR SINE MIR -133 129 70 2292 120 3 0 chr9 35552265 35552566 -82310061 - AluSp SINE Alu -11 302 1 1972 93 52 38 chr9 35552580 35552871 -82309756 - AluSc SINE Alu -14 295 1 2351 101 0 0 chr9 35553055 35553352 -82309275 - AluSq SINE Alu -16 297 1 2396 96 0 10 chr9 35553530 35553844 -82308783 - AluSx SINE Alu -1 311 1 2135 114 0 16 chr9 35553876 35554046 -82308581 - AluSg SINE Alu -8 302 138 2477 31 38 3 chr9 35554046 35554333 -82308294 - AluY SINE Alu -12 299 3 2135 114 0 16 chr9 35554333 35554468 -82308159 - AluSg SINE Alu -172 138 2 308 273 115 60 chr9 35554658 35554841 -82307786 - MIR SINE MIR 0 262 70 561 138 41 24 chr9 35554960 35555083 -82307544 - 7SK RNA RNA -68 125 1 664 202 8 0 chr9 35557232 35557351 -82305276 - FLAM_A SINE Alu -13 120 1 2327 59 20 3 chr9 35558378 35558682 -82303945 - AluY SINE Alu -1 310 2 1813 115 25 14 chr9 35559379 35559665 -82302962 + AluSg SINE Alu 1 289 -21 2091 88 16 13 chr9 35559677 35559985 -82302642 - AluY SINE Alu -2 309 1 1894 128 0 3 chr9 35560161 35560468 -82302159 - AluSx SINE Alu 0 306 1 795 211 31 0 chr9 35560471 35560632 -82301995 - AluJo/FRAM SINE Alu 0 302 137 2285 70 0 13 chr9 35560635 35560935 -82301692 - AluY SINE Alu -15 296 1 1490 158 140 0 chr9 35560940 35561205 -82301422 - AluSx SINE Alu 0 302 1 1396 179 60 8 chr9 35561257 35561525 -82301102 + AluJo SINE Alu 1 282 -30 1786 133 39 11 chr9 35561588 35561874 -82300753 + AluJb SINE Alu 5 298 -14 1485 167 37 0 chr9 35561971 35562241 -82300386 - AluJo SINE Alu -18 294 15 718 142 9 0 chr9 35562428 35562534 -82300093 - FLAM_C SINE Alu -25 118 12 2010 114 7 3 chr9 35562554 35562852 -82299775 - AluSg SINE Alu -11 299 1 410 216 106 76 chr9 35562953 35563014 -82299613 - L1ME1 LINE L1 -262 5904 5846 1988 125 0 3 chr9 35563014 35563309 -82299318 - AluSx SINE Alu -18 294 1 1513 107 4 37 chr9 35563319 35563562 -82299065 - AluSq SINE Alu -4 309 75 2028 107 3 38 chr9 35563562 35563880 -82298747 - AluSq SINE Alu -6 307 1 410 216 106 76 chr9 35563880 35564135 -82298492 - L1ME1 LINE L1 -327 5839 5566 647 207 79 6 chr9 35564144 35564308 -82298319 - MER105 DNA DNA -1 203 28 287 170 67 14 chr9 35564314 35564387 -82298240 - L1ME1 LINE L1 -646 5516 5455 588 174 0 0 chr9 35564479 35564577 -82298050 - FLAM_C SINE Alu -35 108 11 242 261 35 3 chr9 35564587 35564694 -82297933 - L1MDa LINE L1 -3968 2572 2482 2046 110 0 54 chr9 35564705 35564876 -82297751 - AluSg SINE Alu 0 300 121 2140 84 7 7 chr9 35564876 35565174 -82297453 - AluSp SINE Alu -15 298 1 2046 110 0 54 chr9 35565174 35565186 -82297441 - AluSg SINE Alu -179 121 110 6283 68 15 10 chr9 35565186 35566751 -82295876 - SVA Other Other -723 1386 46 2046 110 0 54 chr9 35566751 35566882 -82295745 - AluSg SINE Alu -190 110 1 1231 162 103 33 chr9 35566882 35567153 -82295474 - AluJb SINE Alu -8 304 15 1786 123 6 72 chr9 35567616 35567763 -82294864 + AluSx SINE Alu 1 115 -197 2203 92 7 0 chr9 35567763 35568068 -82294559 + AluY SINE Alu 1 307 -4 1786 123 6 72 chr9 35568068 35568252 -82294375 + AluSx SINE Alu 115 310 -2 242 239 159 18 chr9 35568364 35568477 -82294150 - L2 LINE L2 -5 3308 3180 2201 88 3 10 chr9 35568634 35568939 -82293688 + AluSp SINE Alu 1 303 -10 599 170 45 9 chr9 35569025 35569137 -82293490 - AluJb SINE Alu -7 305 190 1051 160 0 21 chr9 35569341 35569528 -82293099 - AluSg/x SINE Alu -5 305 123 2075 104 0 3 chr9 35569535 35569832 -82292795 - AluSx SINE Alu -16 296 1 2111 109 3 0 chr9 35570160 35570464 -82292163 - AluSc SINE Alu -4 305 1 2160 107 3 0 chr9 35571021 35571319 -82291308 + AluSq SINE Alu 1 299 -14 831 205 0 0 chr9 35571326 35571477 -82291150 + AluSg/x SINE Alu 148 298 -14 3787 95 44 2 chr9 35571478 35572027 -82290600 - L1MA1 LINE L1 -175 6127 5556 1921 139 27 0 chr9 35572121 35572416 -82290211 - AluSx SINE Alu -9 303 1 1511 151 53 28 chr9 35572919 35573203 -82289424 - AluJo SINE Alu -21 291 1 423 152 0 25 chr9 35573251 35573330 -82289297 - AluJ/FRAM SINE Alu 0 302 226 546 131 61 20 chr9 35573330 35573429 -82289198 + AluSg/x SINE Alu 100 202 -108 1745 90 8 0 chr9 35573451 35573685 -82288942 + AluSq SINE Alu 1 236 -77 880 131 6 120 chr9 35573685 35573764 -82288863 - AluSx SINE Alu -150 162 114 1572 105 9 0 chr9 35573764 35573992 -82288635 - AluSq SINE Alu -14 299 70 880 131 6 120 chr9 35573992 35574095 -82288532 - AluSx SINE Alu -198 114 1 2078 112 3 13 chr9 35574099 35574413 -82288214 - AluY SINE Alu 0 311 1 1390 151 6 70 chr9 35574418 35574583 -82288044 - AluJb SINE Alu -20 292 118 183 42 0 0 chr9 35574583 35574607 -82288020 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2256 52 0 14 chr9 35574607 35574894 -82287733 - AluY SINE Alu -28 283 1 1390 151 6 70 chr9 35574894 35575039 -82287588 - AluJb SINE Alu -192 120 1 2163 103 3 0 chr9 35575049 35575350 -82287277 - AluSg SINE Alu -8 302 1 885 140 0 22 chr9 35575368 35575504 -82287123 - FLAM_C SINE Alu 0 133 1 2069 107 10 7 chr9 35575514 35575813 -82286814 - AluSq SINE Alu -13 300 1 467 202 55 9 chr9 35575814 35575923 -82286704 - L1M4 LINE L1 -491 5693 5580 813 218 31 35 chr9 35575926 35576155 -82286472 - AluJo SINE Alu -13 299 72 241 157 235 0 chr9 35576155 35576206 -82286421 - Charlie3 DNA MER1_type -2641 69 7 1938 123 3 3 chr9 35576379 35576709 -82285918 + AluSq SINE Alu 1 330 0 2255 83 0 19 chr9 35577182 35577495 -82285132 - AluY SINE Alu -4 307 1 777 151 0 50 chr9 35577497 35577636 -82284991 - AluJo/FLAM SINE Alu -170 132 1 1336 117 5 10 chr9 35577667 35577872 -82284755 - AluSx SINE Alu -108 204 1 877 211 119 23 chr9 35578215 35578433 -82284194 + MIR SINE MIR 1 239 -23 739 178 0 22 chr9 35579196 35579331 -82283296 + FLAM_C SINE Alu 2 133 0 2090 111 0 10 chr9 35580076 35580373 -82282254 - AluSx SINE Alu -18 294 1 1941 84 62 0 chr9 35580712 35580987 -82281640 - AluSp SINE Alu -17 296 5 2149 100 3 0 chr9 35581003 35581304 -82281323 - AluY SINE Alu -9 302 1 2112 94 17 3 chr9 35581824 35582123 -82280504 - AluSc SINE Alu -6 303 1 2029 125 10 10 chr9 35582330 35582635 -82279992 + AluSx SINE Alu 1 305 -7 575 184 18 9 chr9 35582635 35582744 -82279883 - FLAM_A SINE Alu -32 110 1 1978 135 0 0 chr9 35582803 35583106 -82279521 - AluSq SINE Alu -10 303 1 2085 124 0 0 chr9 35583135 35583433 -82279194 + AluSx SINE Alu 1 298 -14 2069 75 0 11 chr9 35584125 35584405 -82278222 + AluY SINE Alu 22 298 -13 1962 120 3 17 chr9 35584440 35584739 -82277888 + AluSx SINE Alu 1 295 -17 1032 77 28 0 chr9 35584750 35584893 -82277734 + Tigger3(Golem) DNA MER2_type 2191 2337 -692 2086 92 34 7 chr9 35584893 35585185 -82277442 - AluSg SINE Alu -10 300 1 330 26 0 0 chr9 35585335 35585374 -82277253 + (TG)n Simple_repeat Simple_repeat 2 40 0 1447 181 22 4 chr9 35585375 35585646 -82276981 - L1MB3 LINE L1 -14 6169 5894 1908 113 0 15 chr9 35585666 35585940 -82276687 - AluSg SINE Alu -36 274 5 1553 208 7 91 chr9 35585946 35586171 -82276456 - L1MA6 LINE L1 -394 5906 5738 2364 70 0 10 chr9 35586171 35586485 -82276142 - AluY SINE Alu 0 311 1 1553 208 7 91 chr9 35586485 35586721 -82275906 - L1MA6 LINE L1 -562 5738 5484 408 117 17 0 chr9 35586746 35586806 -82275821 + U7 snRNA snRNA 2 62 -1 661 196 7 58 chr9 35586886 35587024 -82275603 - FLAM_A SINE Alu -2 131 1 231 245 0 0 chr9 35587057 35587106 -82275521 + L2 LINE L2 3264 3312 -1 2222 84 0 3 chr9 35587124 35587421 -82275206 - AluY SINE Alu -15 296 1 207 176 0 0 chr9 35588033 35588067 -82274560 + T-rich Low_complexity Low_complexity 4 37 0 2253 93 0 10 chr9 35588209 35588521 -82274106 + AluSx SINE Alu 1 309 -3 2099 107 0 23 chr9 35589632 35589804 -82272823 - AluSg SINE Alu -8 302 139 2318 69 7 3 chr9 35589804 35590107 -82272520 - AluSp SINE Alu -9 304 1 2099 107 0 23 chr9 35590107 35590243 -82272384 - AluSg SINE Alu -171 139 1 1925 102 0 53 chr9 35590909 35591212 -82271415 - AluSx SINE Alu -25 287 1 2751 157 25 50 chr9 35591212 35591576 -82271051 - L1MA4A LINE L1 -230 6073 5728 1083 126 0 16 chr9 35591576 35591757 -82270870 + L1MA4A LINE L1 6124 6302 -1 2751 157 25 50 chr9 35591757 35591990 -82270637 - L1MA4A LINE L1 -575 5728 5491 589 200 0 0 chr9 35592009 35592104 -82270523 - FRAM SINE Alu -62 114 20 1075 133 45 27 chr9 35592104 35592258 -82270369 - L1MA4A LINE L1 -746 5400 5331 1510 163 10 58 chr9 35592258 35592571 -82270056 - AluJo SINE Alu -14 298 1 1075 133 45 27 chr9 35592571 35592685 -82269942 - L1MA4A LINE L1 -815 5331 5221 1762 151 28 0 chr9 35592748 35593033 -82269594 + AluSx SINE Alu 1 293 -19 2022 114 13 7 chr9 35593774 35594081 -82268546 + AluSg SINE Alu 1 309 -1 311 202 12 0 chr9 35594785 35594869 -82267758 + CT-rich Low_complexity Low_complexity 3 87 0 1274 191 116 4 chr9 35595026 35595293 -82267334 + AluJo SINE Alu 2 298 -14 2029 103 0 27 chr9 35595367 35595668 -82266959 + AluSx SINE Alu 1 293 -19 838 125 125 12 chr9 35596203 35596348 -82266279 - AluSc SINE Alu -13 296 169 1836 141 7 0 chr9 35596348 35596645 -82265982 - AluSx SINE Alu -13 299 1 1950 123 7 13 chr9 35596645 35596953 -82265674 - AluSx SINE Alu -6 306 1 838 125 125 12 chr9 35596953 35596966 -82265661 - AluSc SINE Alu -139 170 119 2164 115 0 0 chr9 35597094 35597399 -82265228 - AluSx SINE Alu -7 305 1 640 93 0 0 chr9 35597489 35597575 -82265052 - AluSq SINE Alu -17 296 211 1029 91 0 7 chr9 35597575 35597718 -82264909 - AluSq SINE Alu -162 150 9 1759 148 7 13 chr9 35597820 35598125 -82264502 - AluSx SINE Alu -9 303 1 711 242 129 23 chr9 35598150 35598452 -82264175 - L1MC4 LINE L1 -11 8031 7698 2112 109 7 0 chr9 35598452 35598745 -82263882 - AluSx SINE Alu -17 295 1 1377 120 0 14 chr9 35600544 35600761 -82261866 - AluSq SINE Alu -6 307 94 1867 144 3 0 chr9 35601343 35601634 -82260993 + AluSp SINE Alu 15 306 -7 714 137 111 0 chr9 35601689 35601806 -82260821 + FLAM_C SINE Alu 2 131 -12 787 158 0 43 chr9 35601877 35602016 -82260611 + AluJo SINE Alu 3 135 -177 1940 140 3 3 chr9 35602040 35602340 -82260287 + AluSx SINE Alu 3 302 -10 290 126 97 97 chr9 35602361 35602450 -82260177 - L1MD3 LINE L1 -16 7979 7888 2133 109 7 0 chr9 35602450 35602753 -82259874 - AluSc SINE Alu -4 305 1 290 126 97 97 chr9 35602753 35602766 -82259861 - L1MD3 LINE L1 -106 7889 7877 313 250 50 0 chr9 35602766 35602846 -82259781 - MER58 DNA MER1_type -1 2419 131 808 106 57 0 chr9 35602853 35602976 -82259651 - AluSq/x SINE Alu -182 130 1 1258 91 5 27 chr9 35603101 35603287 -82259340 - AluSp SINE Alu -12 301 120 897 52 9 0 chr9 35603293 35603408 -82259219 - AluSc SINE Alu -18 291 176 1184 198 137 45 chr9 35603436 35603505 -82259122 + L1 LINE L1 3822 3883 -2263 1542 128 17 37 chr9 35603505 35603802 -82258825 + AluY SINE Alu 10 300 -11 1184 198 137 45 chr9 35603802 35603938 -82258689 + L1 LINE L1 3883 4005 -2141 1528 172 38 14 chr9 35603938 35604228 -82258399 - AluJb SINE Alu -15 297 1 1184 198 137 45 chr9 35604228 35604461 -82258166 + L1 LINE L1 4005 4350 -1796 475 326 80 84 chr9 35604583 35604731 -82257896 - HAL1b LINE L1 -708 640 493 1428 190 19 35 chr9 35604731 35605042 -82257585 - AluJo SINE Alu -6 306 1 475 326 80 84 chr9 35605042 35605177 -82257450 - HAL1b LINE L1 -855 493 359 2215 99 3 10 chr9 35605177 35605491 -82257136 - AluSx SINE Alu 0 312 1 475 326 80 84 chr9 35605491 35605835 -82256792 - HAL1b LINE L1 -989 359 15 1324 108 66 150 chr9 35605981 35606154 -82256473 - AluSx SINE Alu -6 306 173 2149 115 0 0 chr9 35606154 35606459 -82256168 - AluSx SINE Alu -7 305 1 1324 108 66 150 chr9 35606459 35606619 -82256008 - AluSx SINE Alu -139 173 1 2141 96 0 19 chr9 35606630 35606943 -82255684 - AluY SINE Alu -4 307 1 971 188 13 31 chr9 35606860 35606945 -82255682 - AluJo SINE Alu -92 220 1 777 151 0 50 chr9 35606945 35607084 -82255543 - AluJo/FLAM SINE Alu -170 132 1 1336 117 5 10 chr9 35607115 35607320 -82255307 - AluSx SINE Alu -108 204 1 877 211 119 23 chr9 35607659 35607877 -82254750 + MIR SINE MIR 1 239 -23 732 179 0 22 chr9 35608641 35608775 -82253852 + FLAM_C SINE Alu 3 133 0 2075 111 0 10 chr9 35609520 35609817 -82252810 - AluSx SINE Alu -18 294 1 1950 83 62 0 chr9 35610162 35610438 -82252189 - AluSp SINE Alu -16 297 5 2133 103 3 0 chr9 35610454 35610755 -82251872 - AluY SINE Alu -9 302 1 2128 90 17 3 chr9 35611275 35611574 -82251053 - AluSc SINE Alu -6 303 1 2021 125 10 10 chr9 35611781 35612085 -82250542 + AluSx SINE Alu 1 304 -8 575 184 18 9 chr9 35612085 35612194 -82250433 - FLAM_A SINE Alu -32 110 1 1978 135 0 0 chr9 35612253 35612556 -82250071 - AluSq SINE Alu -10 303 1 2127 120 0 0 chr9 35612585 35612886 -82249741 + AluSx SINE Alu 1 301 -11 2078 75 0 11 chr9 35613578 35613859 -82248768 + AluY SINE Alu 22 299 -12 1231 145 5 5 chr9 35613894 35614101 -82248526 + AluSx SINE Alu 1 207 -105 244 180 0 33 chr9 35614321 35614382 -82248245 - FAM SINE Alu 0 179 121 496 293 41 26 chr9 35614775 35615045 -82247582 - AluSx SINE Alu -22 290 17 252 0 0 0 chr9 35615259 35615287 -82247340 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 673 164 57 0 chr9 35615465 35615587 -82247040 + FLAM_A SINE Alu 10 138 -4 1784 149 20 3 chr9 35615809 35616104 -82246523 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 35616165 35616190 -82246437 + (CGG)n Simple_repeat Simple_repeat 3 27 0 322 141 42 0 chr9 35618736 35618807 -82243820 + GA-rich Low_complexity Low_complexity 2 75 0 1684 112 154 0 chr9 35618939 35619198 -82243429 - AluSg SINE Alu -1 299 1 868 146 0 0 chr9 35619827 35619964 -82242663 + AluSq/x SINE Alu 1 137 -176 2194 84 13 7 chr9 35619964 35620274 -82242353 + AluSp SINE Alu 1 312 -1 2103 123 0 0 chr9 35620300 35620600 -82242027 + AluSx SINE Alu 1 300 -12 443 294 40 0 chr9 35620600 35620726 -82241901 - L1ME2 LINE L1 -122 6042 5912 392 138 5 13 chr9 35620770 35620989 -82241638 + AluJo SINE Alu 10 302 0 1492 150 20 41 chr9 35621012 35621306 -82241321 - AluJb SINE Alu -23 289 2 2127 117 3 0 chr9 35621317 35621625 -82241002 - AluSx SINE Alu -3 309 1 1999 197 33 5 chr9 35621668 35622059 -82240568 - MER65C LTR ERV1 0 461 60 434 193 41 0 chr9 35622066 35622182 -82240445 - AluSg/x SINE Alu -17 283 216 665 89 0 0 chr9 35622182 35622272 -82240355 - AluS SINE Alu -221 91 2 1065 88 0 0 chr9 35622355 35622492 -82240135 + AluSq/x SINE Alu 1 137 -176 1516 95 0 47 chr9 35622498 35622558 -82240069 + AluSg/x SINE Alu 84 145 -167 1805 50 0 0 chr9 35622558 35622776 -82239851 + AluY SINE Alu 82 299 -12 1516 95 0 47 chr9 35622776 35622947 -82239680 + AluSg/x SINE Alu 145 304 -8 198 0 0 0 chr9 35626424 35626446 -82236181 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 300 269 21 15 chr9 35627714 35627829 -82234798 + MIR SINE MIR 79 193 -15 252 284 68 14 chr9 35628342 35628416 -82234211 - Charlie8 DNA MER1_type -2190 227 150 2015 103 58 0 chr9 35628419 35628711 -82233916 + AluSx SINE Alu 2 310 -2 2345 155 22 50 chr9 35628809 35629267 -82233360 - MER65A LTR ERV1 0 445 1 1539 177 3 45 chr9 35629490 35629801 -82232826 - AluJo SINE Alu -14 298 1 249 303 56 14 chr9 35629871 35630013 -82232614 + L1ME LINE L1 5255 5402 -2406 180 0 0 0 chr9 35630015 35630035 -82232592 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2244 62 0 17 chr9 35630035 35630327 -82232300 - AluY SINE Alu -24 287 1 1230 64 0 0 chr9 35630331 35630488 -82232139 - L1PA5 LINE L1 0 6154 5998 1712 166 10 0 chr9 35630493 35630782 -82231845 - AluJb SINE Alu -4 308 17 273 267 0 0 chr9 35630952 35631068 -82231559 + C-rich Low_complexity Low_complexity 1 116 0 209 232 14 0 chr9 35631176 35631245 -82231382 + C-rich Low_complexity Low_complexity 6 75 0 198 0 0 0 chr9 35633666 35633688 -82228939 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 300 269 21 15 chr9 35634956 35635071 -82227556 + MIR SINE MIR 79 193 -15 252 284 68 14 chr9 35635584 35635658 -82226969 - Charlie8 DNA MER1_type -2190 227 150 2156 90 10 7 chr9 35635661 35635962 -82226665 + AluSx SINE Alu 2 303 -9 2209 102 0 13 chr9 35636464 35636778 -82225849 - AluSg SINE Alu 0 310 1 2103 198 78 36 chr9 35636902 35637260 -82225367 - MER90 LTR ERV1 0 575 233 2087 112 0 0 chr9 35637260 35637569 -82225058 - AluSx SINE Alu 0 309 1 2103 198 78 36 chr9 35637569 35637744 -82224883 - MER90 LTR ERV1 -342 233 15 2139 114 3 0 chr9 35637744 35638052 -82224575 - AluSx SINE Alu -3 309 1 2103 198 78 36 chr9 35638052 35638068 -82224559 - MER90 LTR ERV1 -560 15 1 705 208 8 0 chr9 35638081 35638206 -82224421 - AluJo/FRAM SINE Alu -50 262 137 1579 89 5 5 chr9 35638207 35638431 -82224196 - AluSq SINE Alu 0 313 90 1685 178 3 16 chr9 35638435 35638738 -82223889 + AluJb SINE Alu 1 299 -13 245 182 45 15 chr9 35638767 35638833 -82223794 + L1ME LINE L1 5592 5659 -462 1987 126 0 3 chr9 35639448 35639759 -82222868 - AluSx SINE Alu 0 310 1 1937 130 0 32 chr9 35640007 35640322 -82222305 + AluSx SINE Alu 1 305 -7 2287 86 3 0 chr9 35640503 35640807 -82221820 - AluSp SINE Alu -7 306 2 1241 70 0 0 chr9 35640991 35641149 -82221478 + AluY SINE Alu 1 158 -153 1940 113 11 0 chr9 35641457 35641741 -82220886 - AluSx SINE Alu -25 287 1 1778 152 20 14 chr9 35641756 35642052 -82220575 - AluSx SINE Alu -14 298 1 263 27 0 27 chr9 35642054 35642091 -82220536 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1805 90 60 0 chr9 35642091 35642359 -82220268 - AluSx SINE Alu -28 284 1 329 338 15 0 chr9 35642418 35642554 -82220073 + L1ME LINE L1 5680 5817 -304 570 205 8 31 chr9 35642569 35642696 -82219931 + FLAM_C SINE Alu 6 129 -14 2288 53 0 30 chr9 35642831 35643131 -82219496 - AluSc SINE Alu -18 291 1 905 206 0 0 chr9 35643444 35643628 -82218999 - FRAM SINE Alu 0 176 1 1046 101 0 0 chr9 35644022 35644160 -82218467 - AluSq/x SINE Alu -174 138 1 951 100 87 0 chr9 35644161 35644311 -82218316 - L1MA6 LINE L1 -351 5949 5787 2284 75 0 3 chr9 35644321 35644614 -82218013 - AluY SINE Alu -19 292 1 314 150 12 124 chr9 35644614 35644651 -82217976 + MSTB LTR MaLR 361 380 -46 1248 56 56 0 chr9 35644651 35644812 -82217815 - L1PA11 LINE L1 0 6174 6005 314 150 12 124 chr9 35644812 35644855 -82217772 + MSTB LTR MaLR 380 426 0 1140 139 0 0 chr9 35644941 35645113 -82217514 + AluJb SINE Alu 134 305 -7 3209 308 80 38 chr9 35645212 35645470 -82217157 + HERV16 LTR ERVL 827 1073 -3923 1820 112 16 70 chr9 35645470 35645591 -82217036 + AluSx SINE Alu 11 137 -175 2302 84 0 10 chr9 35645591 35645902 -82216725 + AluY SINE Alu 1 308 -3 1820 112 16 70 chr9 35645902 35645919 -82216708 + AluSx SINE Alu 137 153 -159 1902 142 0 19 chr9 35645919 35646237 -82216390 + AluSp SINE Alu 1 312 -1 1820 112 16 70 chr9 35646237 35646409 -82216218 + AluSx SINE Alu 153 305 -7 2184 103 17 0 chr9 35646411 35646712 -82215915 + AluSq SINE Alu 1 306 -7 3209 308 80 38 chr9 35646712 35646869 -82215758 + HERV16 LTR ERVL 1073 1222 -3774 1646 177 0 17 chr9 35646869 35647168 -82215459 + AluJb SINE Alu 1 294 -18 3209 308 80 38 chr9 35647168 35647811 -82214816 + HERV16 LTR ERVL 1222 1836 -3160 2007 110 0 7 chr9 35647811 35648138 -82214489 + AluSc SINE Alu 1 325 0 3209 308 80 38 chr9 35648138 35648432 -82214195 + HERV16 LTR ERVL 1836 2116 -2880 2016 63 0 22 chr9 35648432 35648703 -82213924 + AluY SINE Alu 44 308 -3 3209 308 80 38 chr9 35648703 35649039 -82213588 + HERV16 LTR ERVL 2116 2678 -2318 948 123 53 47 chr9 35649045 35649216 -82213411 + AluJb SINE Alu 12 183 -129 754 193 113 0 chr9 35649391 35649541 -82213086 + AluSg/x SINE Alu 135 301 -11 2037 117 0 3 chr9 35649545 35649835 -82212792 + AluSq SINE Alu 1 289 -24 2221 89 3 0 chr9 35649988 35650280 -82212347 - AluSp SINE Alu -20 293 1 2140 110 7 0 chr9 35650284 35650583 -82212044 - AluSx SINE Alu -11 301 1 1995 115 0 30 chr9 35650740 35651045 -82211582 - AluSx SINE Alu -16 296 1 377 248 51 64 chr9 35651496 35651614 -82211013 - L2 LINE L2 -181 3091 2974 2217 114 0 0 chr9 35651614 35651922 -82210705 + AluSg SINE Alu 1 308 -2 377 248 51 64 chr9 35651922 35651960 -82210667 - L2 LINE L2 -298 2974 2937 575 131 0 0 chr9 35652086 35652198 -82210429 - AluJ SINE Alu 0 310 199 432 239 11 0 chr9 35652197 35652285 -82210342 - AluJ SINE Alu -193 119 31 * 246 313 222 16 chr9 35652293 35652721 -82209906 - L2 LINE L2 -508 2806 2291 319 264 109 36 chr9 35652805 35652915 -82209712 - L1MCa LINE L1 -4311 2115 1998 300 239 54 33 chr9 35653894 35653942 -82208685 - L1MC4 LINE L1 -1339 6703 6658 348 205 94 77 chr9 35653942 35654059 -82208568 - FLAM_A SINE Alu -11 122 4 300 239 54 33 chr9 35654059 35654085 -82208542 - L1MC4 LINE L1 -1384 6658 6634 1893 109 20 26 chr9 35654085 35654389 -82208238 - AluSx SINE Alu -10 302 1 300 239 54 33 chr9 35654389 35654405 -82208222 - L1MC4 LINE L1 -1408 6634 6610 292 279 43 57 chr9 35654514 35654654 -82207973 + L2 LINE L2 3175 3312 -1 196 241 39 98 chr9 35654727 35654838 -82207789 - L2 LINE L2 -279 2993 2887 1060 238 75 72 chr9 35655783 35656144 -82206483 - L2 LINE L2 0 3313 2952 842 180 0 2 chr9 35656556 35656785 -82205842 + AluJb SINE Alu 1 279 -33 237 248 178 10 chr9 35656795 35656851 -82205776 - L1ME4a LINE L1 -1 6120 6075 2071 110 7 3 chr9 35656851 35657144 -82205483 + AluSg SINE Alu 1 295 -10 191 35 0 35 chr9 35657144 35657173 -82205454 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 237 248 178 10 chr9 35657178 35657222 -82205405 - L1ME4a LINE L1 -46 6075 6003 961 173 0 17 chr9 35657222 35657401 -82205226 - FRAM SINE Alu -2 174 1 928 164 0 12 chr9 35657456 35657621 -82205006 - FRAM SINE Alu -13 163 1 1893 103 4 0 chr9 35657631 35657892 -82204735 - AluSx SINE Alu -15 297 36 2197 122 0 7 chr9 35657961 35658265 -82204362 - AluSx SINE Alu -10 302 1 205 325 138 42 chr9 35658322 35658562 -82204065 + L2 LINE L2 2677 2939 -375 2154 106 44 0 chr9 35658619 35658912 -82203715 - AluSx SINE Alu -6 306 1 1682 149 52 4 chr9 35659031 35659327 -82203300 - AluJo SINE Alu 0 309 1 2117 115 13 0 chr9 35659465 35659769 -82202858 - AluSg SINE Alu -2 308 1 1815 142 0 57 chr9 35659774 35660105 -82202522 - AluJb SINE Alu 0 312 1 2104 106 40 10 chr9 35660217 35660518 -82202109 - AluSg SINE Alu 0 310 1 1156 159 62 5 chr9 35660598 35660806 -82201821 - AluJb SINE Alu -12 300 81 1878 152 3 3 chr9 35660862 35661152 -82201475 - AluJb SINE Alu -8 304 15 2238 129 3 0 chr9 35661207 35661518 -82201109 + AluSp SINE Alu 1 312 -1 1726 179 19 32 chr9 35661526 35661834 -82200793 + AluJo SINE Alu 1 304 -8 1606 182 0 27 chr9 35661962 35662098 -82200529 + AluJo SINE Alu 3 141 -171 1683 195 0 16 chr9 35662098 35662400 -82200227 + AluJb SINE Alu 1 297 -15 2562 63 0 0 chr9 35662400 35662699 -82199928 + AluY SINE Alu 1 299 -12 1606 182 0 27 chr9 35662401 35662858 -82199769 + AluJo SINE Alu 141 290 -22 2358 106 0 10 chr9 35663006 35663318 -82199309 + AluSg SINE Alu 1 309 -1 2235 103 17 0 chr9 35663371 35663663 -82198964 + AluSx SINE Alu 6 302 -10 1288 99 0 0 chr9 35663663 35663825 -82198802 + AluSg/x SINE Alu 134 295 -17 2103 136 3 7 chr9 35663828 35664137 -82198490 + AluSx SINE Alu 1 308 -4 2084 135 3 7 chr9 35664943 35665247 -82197380 - AluSx SINE Alu -9 303 1 2001 128 27 14 chr9 35665344 35665641 -82196986 + AluSg SINE Alu 3 303 -7 1309 164 0 26 chr9 35666268 35666499 -82196128 - AluSg/x SINE Alu -4 306 82 1641 178 14 4 chr9 35666524 35666669 -82195958 - AluJo SINE Alu -33 279 128 194 0 39 0 chr9 35666669 35666695 -82195932 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1641 178 14 4 chr9 35666695 35666825 -82195802 - AluJo SINE Alu -184 128 1 1347 158 48 34 chr9 35667172 35667210 -82195417 + MER46B DNA MER2_type 1 37 -2694 1967 165 0 25 chr9 35667210 35667526 -82195101 + AluJb SINE Alu 1 308 -4 2404 80 0 0 chr9 35667526 35667815 -82194812 + AluSc SINE Alu 1 289 -20 1347 158 48 34 chr9 35667815 35668067 -82194560 + MER46B DNA MER2_type 36 171 -65 2388 86 0 0 chr9 35668069 35668359 -82194268 + AluY SINE Alu 1 290 -21 2016 119 27 14 chr9 35668530 35668823 -82193804 + AluSg SINE Alu 7 303 -7 1315 165 0 22 chr9 35669450 35669680 -82192947 - AluSg/x SINE Alu -4 306 82 1641 178 14 4 chr9 35669705 35669850 -82192777 - AluJo SINE Alu -33 279 128 194 0 39 0 chr9 35669850 35669876 -82192751 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1641 178 14 4 chr9 35669876 35670006 -82192621 - AluJo SINE Alu -184 128 1 1942 168 0 25 chr9 35670391 35670707 -82191920 + AluJb SINE Alu 1 308 -4 1856 98 4 0 chr9 35670707 35670942 -82191685 + AluSq SINE Alu 1 236 -77 960 131 6 120 chr9 35670942 35671021 -82191606 - AluSx SINE Alu -150 162 114 1688 105 9 0 chr9 35671021 35671249 -82191378 - AluSq SINE Alu -14 299 70 960 131 6 120 chr9 35671249 35671352 -82191275 - AluSx SINE Alu -198 114 1 2233 112 3 13 chr9 35671356 35671670 -82190957 - AluY SINE Alu 0 311 1 1536 152 6 70 chr9 35671672 35671840 -82190787 - AluJb SINE Alu -17 295 118 183 42 0 0 chr9 35671840 35671864 -82190763 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2398 49 0 14 chr9 35671864 35672151 -82190476 - AluY SINE Alu -28 283 1 1536 152 6 70 chr9 35672151 35672296 -82190331 - AluJb SINE Alu -192 120 1 2311 103 3 0 chr9 35672306 35672607 -82190020 - AluSg SINE Alu -8 302 1 886 147 0 22 chr9 35672625 35672761 -82189866 - FLAM_C SINE Alu 0 133 1 2204 104 13 7 chr9 35672771 35673069 -82189558 - AluSq SINE Alu -13 300 1 441 202 55 9 chr9 35673070 35673179 -82189448 - L1M4 LINE L1 -491 5693 5580 935 240 9 13 chr9 35673182 35673411 -82189216 - AluJo SINE Alu -13 299 72 2349 106 0 10 chr9 35673635 35673947 -82188680 + AluSg SINE Alu 1 309 -1 2235 103 17 0 chr9 35674000 35674292 -82188335 + AluSx SINE Alu 6 302 -10 1288 99 0 0 chr9 35674292 35674454 -82188173 + AluSg/x SINE Alu 134 295 -17 2103 136 3 7 chr9 35674457 35674766 -82187861 + AluSx SINE Alu 1 308 -4 2084 135 3 7 chr9 35675572 35675876 -82186751 - AluSx SINE Alu -9 303 1 1608 158 21 0 chr9 35676334 35676575 -82186052 - AluJb SINE Alu -62 250 5 1536 184 58 7 chr9 35676629 35676906 -82185721 - AluJo SINE Alu -21 291 1 980 181 0 0 chr9 35676958 35677113 -82185514 + AluSq SINE Alu 1 155 -158 438 141 70 0 chr9 35677114 35677185 -82185442 + AluSg/x SINE Alu 192 267 -43 187 179 36 89 chr9 35677414 35677470 -82185157 - MER5A DNA MER1_type -131 58 6 2288 99 14 0 chr9 35677647 35677939 -82184688 - AluSx SINE Alu -16 296 1 2183 90 41 10 chr9 35678247 35678537 -82184090 - AluSq SINE Alu -14 299 1 543 127 13 0 chr9 35678559 35678638 -82183989 - AluSp SINE Alu -109 204 125 * 562 214 0 0 chr9 35678632 35678744 -82183883 + AluSg/x SINE Alu 200 311 -1 1646 147 51 38 chr9 35678785 35679077 -82183550 + AluJo SINE Alu 1 296 -16 2051 130 25 0 chr9 35679572 35679857 -82182770 + AluSx SINE Alu 1 292 -20 1540 161 31 35 chr9 35679859 35680111 -82182516 + MER46B DNA MER2_type 43 170 -2561 2598 60 0 0 chr9 35680111 35680409 -82182218 + AluY SINE Alu 1 298 -13 1540 161 31 35 chr9 35680409 35680473 -82182154 + MER46B DNA MER2_type 170 233 -3 2265 121 0 3 chr9 35680512 35680818 -82181809 - AluSx SINE Alu -7 305 1 2377 78 3 14 chr9 35681792 35682087 -82180540 + AluSp SINE Alu 1 292 -21 2448 100 0 0 chr9 35682226 35682535 -82180092 - AluSc SINE Alu 0 309 1 489 233 97 0 chr9 35682619 35682792 -82179835 + L1MA10 LINE L1 5987 6334 0 256 213 27 124 chr9 35682949 35683082 -82179545 - MIR SINE MIR -72 136 49 1607 147 34 59 chr9 35683269 35683589 -82179038 - AluJb SINE Alu 0 312 1 2207 127 3 3 chr9 35683590 35683897 -82178730 - AluSx SINE Alu -5 307 1 2099 103 41 10 chr9 35683983 35684273 -82178354 + AluSq SINE Alu 1 299 -14 2288 99 14 0 chr9 35684581 35684873 -82177754 + AluSx SINE Alu 1 296 -16 187 179 36 89 chr9 35685051 35685107 -82177520 + MER5A DNA MER1_type 6 58 -131 2088 126 10 13 chr9 35685808 35686109 -82176518 - AluJo SINE Alu -8 304 5 252 244 0 12 chr9 35686999 35687081 -82175546 + (TG)n Simple_repeat Simple_repeat 2 82 0 21 0 0 0 chr9 35688127 35688148 -82174479 + AT_rich Low_complexity Low_complexity 1 21 0 2287 97 3 0 chr9 35689384 35689674 -82172953 + AluSx SINE Alu 1 291 -21 1492 125 17 0 chr9 35689756 35689988 -82172639 - MER72 LTR ERV1 -27 695 460 2277 103 0 3 chr9 35691075 35691366 -82171261 + AluSc SINE Alu 1 290 -19 1839 171 27 0 chr9 35691494 35691793 -82170834 + AluJo SINE Alu 1 307 -5 1596 153 126 0 chr9 35691795 35692056 -82170571 + AluJo SINE Alu 1 294 -8 2257 109 0 3 chr9 35692058 35692351 -82170276 + AluSx SINE Alu 1 292 -20 265 148 23 171 chr9 35692401 35692466 -82170161 + MLT1D LTR MaLR 403 453 -52 2335 109 0 3 chr9 35692466 35692770 -82169857 + AluSx SINE Alu 1 303 -9 265 148 23 171 chr9 35692770 35692792 -82169835 + MLT1D LTR MaLR 453 477 -28 2094 115 38 0 chr9 35693021 35693309 -82169318 - AluSq SINE Alu -14 299 1 2036 156 0 13 chr9 35693310 35693617 -82169010 - AluSx SINE Alu -9 303 1 1766 125 3 83 chr9 35693621 35693818 -82168809 - AluSx SINE Alu 0 322 111 2309 109 3 10 chr9 35693818 35693997 -82168630 - AluSg SINE Alu 0 310 132 2508 83 3 0 chr9 35693997 35694299 -82168328 - AluSp SINE Alu -10 303 1 2309 109 3 10 chr9 35694299 35694431 -82168196 - AluSg SINE Alu -178 132 1 2122 111 7 7 chr9 35694432 35694729 -82167898 - AluSc SINE Alu -12 297 1 1766 125 3 83 chr9 35694729 35694876 -82167751 - AluSx SINE Alu -210 112 1 753 161 23 0 chr9 35694879 35695009 -82167618 - FLAM_C SINE Alu 0 133 1 2023 128 7 7 chr9 35695010 35695307 -82167320 - AluSc SINE Alu -12 297 1 234 175 0 0 chr9 35695703 35695743 -82166884 - AluSq SINE Alu -11 291 252 194 0 39 0 chr9 35695763 35695789 -82166838 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 1977 92 0 37 chr9 35695790 35696061 -82166566 - AluSq SINE Alu -52 261 1 25 51 0 0 chr9 35696069 35696108 -82166519 + AT_rich Low_complexity Low_complexity 1 39 0 561 154 82 36 chr9 35696108 35696218 -82166409 - AluSx SINE Alu -14 296 182 2544 57 0 7 chr9 35696218 35696519 -82166108 + AluY SINE Alu 1 299 -12 1495 93 10 0 chr9 35696519 35696712 -82165915 - AluSx SINE Alu -116 196 1 26 0 0 0 chr9 35696712 35696738 -82165889 + AT_rich Low_complexity Low_complexity 1 26 0 309 149 0 30 chr9 35696857 35696924 -82165703 + AluSc SINE Alu 234 298 -1 1960 142 7 7 chr9 35696967 35697256 -82165371 - AluJo SINE Alu -8 304 16 2652 48 0 13 chr9 35697510 35697823 -82164804 + AluY SINE Alu 1 309 -2 2328 102 0 7 chr9 35697835 35698140 -82164487 + AluSg SINE Alu 1 303 -7 649 319 104 5 chr9 35698405 35698796 -82163831 + MLT1K LTR MaLR 3 588 0 2520 77 0 10 chr9 35698971 35699284 -82163343 + AluY SINE Alu 1 310 -1 1676 151 11 18 chr9 35699324 35699602 -82163025 - AluJo SINE Alu -32 280 5 2049 122 3 46 chr9 35699705 35700009 -82162618 - AluSx SINE Alu -21 291 1 274 255 31 35 chr9 35700042 35700081 -82162546 - L1MC/D LINE L1 -615 5551 5513 1977 137 0 23 chr9 35700081 35700381 -82162246 + AluSx SINE Alu 1 293 -19 274 255 31 35 chr9 35700381 35700469 -82162158 - L1MC/D LINE L1 -653 5513 5473 185 125 75 0 chr9 35700473 35700513 -82162114 + CT-rich Low_complexity Low_complexity 3 45 0 2016 119 0 11 chr9 35701074 35701352 -82161275 + AluSx SINE Alu 1 275 -37 189 74 0 0 chr9 35701352 35701379 -82161248 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2335 82 3 0 chr9 35701512 35701803 -82160824 - AluY SINE Alu -3 308 17 198 310 14 14 chr9 35702206 35702277 -82160350 - MIR3 SINE MIR -20 188 118 368 319 162 9 chr9 35702357 35702573 -82160054 + MIR SINE MIR 14 262 0 597 272 123 5 chr9 35702895 35703090 -82159537 + MER21B LTR ERV1 41 258 -605 2145 103 0 63 chr9 35703093 35703412 -82159215 + AluSx SINE Alu 1 299 -13 1304 98 0 0 chr9 35703412 35703575 -82159052 + AluSq SINE Alu 134 296 -17 2133 103 4 4 chr9 35703579 35703886 -82158741 + AluSc SINE Alu 1 307 0 1972 202 84 17 chr9 35703915 35704409 -82158218 + MER21B LTR ERV1 366 862 -1 512 272 112 24 chr9 35704432 35704601 -82158026 + MIR SINE MIR 20 203 -59 877 241 0 0 chr9 35704976 35705142 -82157485 - FAM SINE Alu -9 166 1 30 83 0 0 chr9 35705149 35705221 -82157406 + AT_rich Low_complexity Low_complexity 1 72 0 316 309 20 53 chr9 35705415 35705567 -82157060 - L1MC4 LINE L1 -295 7747 7601 2260 69 69 14 chr9 35705568 35705856 -82156771 - AluSc SINE Alu -5 304 1 1545 171 6 76 chr9 35705856 35706009 -82156618 - AluJo SINE Alu -17 295 174 1614 95 9 0 chr9 35706009 35706220 -82156407 + AluSg/x SINE Alu 87 299 -11 1545 171 6 76 chr9 35706220 35706382 -82156245 - AluJo SINE Alu -138 174 2 377 260 0 0 chr9 35706383 35706471 -82156156 + L1MC4a LINE L1 5513 5591 -530 332 263 63 11 chr9 35706475 35706570 -82156057 + L1MC4a LINE L1 5863 5962 -1846 * 356 225 13 49 chr9 35706558 35706659 -82155968 + L1MC4 LINE L1 1995 6983 -1339 1978 90 27 111 chr9 35706764 35707097 -82155530 + AluSx SINE Alu 1 305 -7 507 274 90 24 chr9 35707112 35707324 -82155303 - LTR33A LTR ERVL -277 246 21 2562 53 0 3 chr9 35707355 35707654 -82154973 + AluY SINE Alu 1 298 -13 795 209 70 0 chr9 35707654 35707812 -82154815 + AluJo/FRAM SINE Alu 134 302 -10 1465 163 17 57 chr9 35707817 35708117 -82154510 + AluJo SINE Alu 2 289 -23 2211 109 0 3 chr9 35708117 35708411 -82154216 - AluY SINE Alu -18 293 1 26 0 0 0 chr9 35708414 35708440 -82154187 + AT_rich Low_complexity Low_complexity 1 26 0 1646 134 3 45 chr9 35708560 35708874 -82153753 + AluSg SINE Alu 5 305 -5 1607 147 34 59 chr9 35708875 35709195 -82153432 + AluJb SINE Alu 1 312 0 256 213 27 124 chr9 35709382 35709515 -82153112 + MIR SINE MIR 49 136 -72 517 227 97 0 chr9 35709672 35709845 -82152782 - L1MA10 LINE L1 0 6334 5987 2281 93 0 3 chr9 35709929 35710231 -82152396 + AluSc SINE Alu 1 301 -8 1390 151 6 70 chr9 35710241 35710386 -82152241 + AluJb SINE Alu 1 118 -194 2270 49 0 14 chr9 35710386 35710697 -82151930 + AluY SINE Alu 1 307 0 1390 151 6 70 chr9 35710697 35710862 -82151765 + AluJb SINE Alu 118 292 -20 2078 112 3 13 chr9 35710867 35711181 -82151446 + AluY SINE Alu 1 311 0 915 141 5 115 chr9 35711185 35711288 -82151339 + AluSx SINE Alu 1 75 -237 1572 105 9 0 chr9 35711288 35711516 -82151111 + AluSq SINE Alu 70 299 -14 915 141 5 115 chr9 35711516 35711604 -82151023 + AluSx SINE Alu 75 171 -141 568 131 12 0 chr9 35711605 35711689 -82150938 - AluSq SINE Alu -87 226 142 642 167 0 0 chr9 35711791 35711887 -82150740 + FRAM SINE Alu 55 150 -26 423 0 0 0 chr9 35711891 35711938 -82150689 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 373 95 48 16 chr9 35711938 35712001 -82150626 - AluSg SINE Alu -193 107 43 791 125 0 17 chr9 35712020 35712140 -82150487 - FLAM_C SINE Alu -15 118 1 1129 314 56 43 chr9 35712155 35712348 -82150279 + HERVL LTR ERVL 2669 2858 -2796 2331 71 10 6 chr9 35712348 35712659 -82149968 - AluSx SINE Alu 0 312 1 1129 314 56 43 chr9 35712659 35712964 -82149663 + HERVL LTR ERVL 2858 3179 -2475 1645 198 50 33 chr9 35712964 35713323 -82149304 + MLT1A1 LTR MaLR 1 365 0 1129 314 56 43 chr9 35713323 35713431 -82149196 + HERVL LTR ERVL 3179 3284 -2370 2037 114 0 17 chr9 35713449 35713747 -82148880 + AluSx SINE Alu 1 293 -19 2081 118 3 3 chr9 35713839 35714135 -82148492 + AluSx SINE Alu 1 296 -16 596 331 43 37 chr9 35714400 35714658 -82147969 + HERVL LTR ERVL 3764 4028 -1736 1724 140 86 73 chr9 35714658 35715043 -82147584 - MLT1B LTR MaLR 0 390 1 596 331 43 37 chr9 35715043 35715246 -82147381 + HERVL LTR ERVL 4028 4228 -1536 1602 169 4 4 chr9 35715383 35715655 -82146972 - AluJo SINE Alu -30 282 11 232 279 140 0 chr9 35715715 35715894 -82146733 - L1P LINE L1 -758 5388 5185 714 316 38 14 chr9 35715991 35716361 -82146266 + L1MEc LINE L1 67 445 -5951 688 192 41 0 chr9 35716397 35716543 -82146084 - MER67A LTR ERV1 0 543 392 2239 92 0 3 chr9 35716580 35716885 -82145742 + AluSq SINE Alu 1 304 -9 2144 101 0 3 chr9 35716895 35717193 -82145434 + AluSg SINE Alu 2 298 -12 1864 128 47 0 chr9 35717195 35717492 -82145135 + AluSx SINE Alu 1 311 -1 2046 187 88 29 chr9 35717506 35717950 -82144677 - MER67B LTR ERV1 -140 521 52 775 115 0 33 chr9 35717964 35718086 -82144541 - AluSp/q SINE Alu 0 313 196 322 141 42 0 chr9 35718642 35718713 -82143914 + GA-rich Low_complexity Low_complexity 2 75 0 1684 112 154 0 chr9 35718845 35719104 -82143523 - AluSg SINE Alu -1 299 1 628 241 0 7 chr9 35719734 35719871 -82142756 + AluSq/x SINE Alu 2 137 -176 1866 114 17 7 chr9 35719882 35720180 -82142447 + AluSq SINE Alu 12 312 -1 2315 84 0 0 chr9 35720206 35720504 -82142123 + AluSq SINE Alu 1 298 -15 565 216 161 55 chr9 35720506 35720798 -82141829 - MLT1J LTR MaLR -74 437 115 423 245 0 9 chr9 35720833 35720939 -82141688 + AluSq/x SINE Alu 2 106 -207 442 315 63 9 chr9 35720939 35721243 -82141384 - HERVL LTR ERVL -1127 4361 4039 6040 41 11 18 chr9 35721353 35722189 -82140438 + SVA Other Other 635 1386 0 487 222 0 26 chr9 35722200 35722317 -82140310 + AluJb SINE Alu 116 229 -83 194 62 31 0 chr9 35722460 35722492 -82140135 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2007 109 3 3 chr9 35722494 35722777 -82139850 - AluSx SINE Alu -29 283 1 1793 157 3 7 chr9 35722851 35723150 -82139477 + AluJb SINE Alu 1 298 -14 198 0 0 0 chr9 35723556 35723578 -82139049 + (A)n Simple_repeat Simple_repeat 1 22 0 792 181 0 0 chr9 35723799 35723932 -82138695 + FLAM_C SINE Alu 7 139 -4 441 262 0 0 chr9 35723932 35724035 -82138592 + MLT1F1 LTR MaLR 23 125 -442 2520 161 89 30 chr9 35724035 35724594 -82138033 + L1MD3 LINE L1 7404 7995 0 325 346 19 37 chr9 35724605 35724767 -82137860 + L1MEd LINE L1 892 1050 -5069 1943 141 0 3 chr9 35724769 35725073 -82137554 + AluSx SINE Alu 1 303 -9 1055 157 6 0 chr9 35725073 35725245 -82137382 + AluSg/x SINE Alu 132 304 -6 369 281 79 9 chr9 35725304 35725418 -82137209 + L1M4 LINE L1 13 134 -6408 2197 118 0 0 chr9 35725420 35725725 -82136902 + AluSx SINE Alu 1 305 -7 1092 206 181 8 chr9 35725882 35726275 -82136352 + L1M4 LINE L1 4742 5202 -944 543 196 69 144 chr9 35726384 35726508 -82136119 + MIR SINE MIR 11 113 -149 659 100 0 0 chr9 35726508 35726598 -82136029 + HY4 scRNA scRNA 1 90 -3 543 196 69 144 chr9 35726598 35726728 -82135899 + MIR SINE MIR 113 251 -11 2181 99 3 0 chr9 35726802 35727104 -82135523 + AluY SINE Alu 1 303 -8 246 254 148 8 chr9 35727182 35727304 -82135323 + L1MC4a LINE L1 6195 6333 -1475 1494 148 39 8 chr9 35727313 35727569 -82135058 + MER21A LTR ERV1 1 264 -667 2905 153 113 12 chr9 35727574 35728079 -82134548 + MER21A LTR ERV1 376 931 0 1931 123 3 16 chr9 35728082 35728390 -82134237 - AluSx SINE Alu -8 304 1 807 153 0 28 chr9 35728675 35728819 -82133808 + FLAM_C SINE Alu 1 140 -3 2318 89 0 3 chr9 35728877 35729180 -82133447 - AluSg SINE Alu -8 302 1 765 173 0 0 chr9 35729271 35729398 -82133229 + FLAM_C SINE Alu 1 127 -6 48 0 0 0 chr9 35729398 35729446 -82133181 + AT_rich Low_complexity Low_complexity 1 48 0 621 192 39 39 chr9 35730018 35730148 -82132479 + FLAM_C SINE Alu 2 131 -12 230 245 255 11 chr9 35730149 35730243 -82132384 + MER5A DNA MER1_type 73 189 0 365 175 0 0 chr9 35730251 35730308 -82132319 + MER3 DNA MER1_type 1 57 -152 1942 132 0 43 chr9 35730466 35730792 -82131835 + AluJb SINE Alu 1 312 0 1987 132 0 0 chr9 35730825 35731120 -82131507 + AluSx SINE Alu 2 296 -16 1161 27 41 0 chr9 35731225 35731371 -82131256 - L1PA13 LINE L1 -4 6159 6008 1994 119 3 0 chr9 35731478 35731785 -82130842 + AluSp SINE Alu 1 308 0 2100 127 0 0 chr9 35731925 35732224 -82130403 + AluSx SINE Alu 1 299 -13 2233 99 0 0 chr9 35732434 35732738 -82129889 - AluSq SINE Alu -9 304 1 768 181 0 15 chr9 35732848 35732981 -82129646 + FLAM_C SINE Alu 3 133 0 870 206 78 37 chr9 35734169 35734205 -82128422 + L1ME LINE L1 5083 5116 -1048 2411 80 0 0 chr9 35734205 35734518 -82128109 + AluSq SINE Alu 1 313 0 870 206 78 37 chr9 35734518 35734928 -82127699 + L1ME LINE L1 5116 5541 -623 289 284 105 42 chr9 35735359 35735540 -82127087 + MIR SINE MIR 3 190 -67 2017 130 0 0 chr9 35735542 35735849 -82126778 - AluSx SINE Alu -5 307 1 1647 168 3 7 chr9 35735856 35736147 -82126480 - AluJo SINE Alu -22 290 1 2236 98 3 0 chr9 35736179 35736486 -82126141 + AluSq SINE Alu 1 308 -5 2092 84 0 4 chr9 35736491 35736765 -82125862 + AluSc SINE Alu 1 273 -36 2102 77 3 20 chr9 35737386 35737683 -82124944 + AluSp SINE Alu 6 297 -16 604 136 64 16 chr9 35738275 35738400 -82124227 + L1MD3 LINE L1 6918 7048 -947 * 1857 202 38 58 chr9 35738382 35738650 -82123977 + L1MD3 LINE L1 7513 7768 -227 1765 148 0 37 chr9 35738650 35738974 -82123653 + AluJb SINE Alu 1 312 0 1857 202 38 58 chr9 35738974 35739185 -82123442 + L1MD3 LINE L1 7768 7982 -13 29 0 0 0 chr9 35739194 35739223 -82123404 + AT_rich Low_complexity Low_complexity 1 29 0 2239 92 0 3 chr9 35739223 35739529 -82123098 + AluSg SINE Alu 1 305 -5 2946 247 77 107 chr9 35739538 35740746 -82121881 + L1M3b LINE L1 11 1254 -5027 2045 137 0 0 chr9 35740746 35741045 -82121582 + AluSx SINE Alu 1 299 -13 2946 247 77 107 chr9 35741045 35741154 -82121473 + L1M3b LINE L1 1254 1365 -4916 765 147 39 8 chr9 35741154 35741283 -82121344 + FLAM_C SINE Alu 1 133 0 2946 247 77 107 chr9 35741283 35741370 -82121257 + L1M3b LINE L1 1365 1453 -4828 2095 113 0 0 chr9 35741370 35741652 -82120975 + AluSg SINE Alu 1 282 -28 351 0 0 0 chr9 35741658 35741697 -82120930 + (CA)n Simple_repeat Simple_repeat 2 40 0 2946 247 77 107 chr9 35741697 35741851 -82120776 + L1M3b LINE L1 1458 1530 -4751 1431 172 10 57 chr9 35741851 35741986 -82120641 + AluJb SINE Alu 1 141 -164 2141 85 24 3 chr9 35741986 35742279 -82120348 + AluSq SINE Alu 1 299 -14 1431 172 10 57 chr9 35742279 35742462 -82120165 + AluJb SINE Alu 141 305 0 663 226 0 0 chr9 35742516 35742631 -82119996 + FLAM_A SINE Alu 1 115 -18 2167 77 31 0 chr9 35742698 35742984 -82119643 + AluSq SINE Alu 1 295 -18 1787 164 7 7 chr9 35743107 35743417 -82119210 + AluJb SINE Alu 3 312 0 979 76 0 8 chr9 35743556 35743688 -82118939 + AluSp SINE Alu 2 132 -181 2307 78 0 7 chr9 35743691 35744000 -82118627 + AluSq SINE Alu 1 307 -6 2335 67 3 0 chr9 35744000 35744300 -82118327 + AluY SINE Alu 1 301 -10 488 285 146 27 chr9 35744313 35744608 -82118019 + LTR16A1 LTR ERVL 123 452 -5 691 271 45 41 chr9 35744614 35744858 -82117769 + HERV16 LTR ERVL 2 246 -4750 871 297 16 39 chr9 35744892 35745102 -82117525 + HERV16 LTR ERVL 343 545 -4451 1736 168 27 0 chr9 35745102 35745394 -82117233 + AluJb SINE Alu 1 300 -12 871 297 16 39 chr9 35745394 35745489 -82117138 + HERV16 LTR ERVL 545 641 -4355 1905 133 86 15 chr9 35745490 35745829 -82116798 + MSTA LTR MaLR 2 364 -64 2388 63 0 0 chr9 35745829 35746129 -82116498 - AluY SINE Alu -11 300 1 2192 106 3 0 chr9 35746409 35746721 -82115906 + AluSp SINE Alu 1 313 0 244 336 19 10 chr9 35746766 35746870 -82115757 + L3 LINE CR1 1462 1566 -11 723 84 0 0 chr9 35746910 35747005 -82115622 - AluY SINE Alu -14 297 203 2060 70 0 0 chr9 35747007 35747265 -82115362 - AluY SINE Alu -53 258 1 1576 147 4 12 chr9 35747265 35747523 -82115104 - AluJo SINE Alu -21 291 35 207 0 0 0 chr9 35748080 35748103 -82114524 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 317 141 77 0 chr9 35748184 35748262 -82114365 + L1MCc LINE L1 32 115 -6308 * 870 246 44 35 chr9 35748260 35748736 -82113891 + L1MCc LINE L1 1296 1532 -4891 1036 166 5 26 chr9 35748736 35748865 -82113762 - AluJo SINE Alu -73 239 114 2071 112 0 22 chr9 35748865 35749178 -82113449 + AluSx SINE Alu 1 306 -6 1036 166 5 26 chr9 35749178 35749241 -82113386 - AluJo SINE Alu -198 114 51 468 0 0 0 chr9 35749244 35749296 -82113331 + (CA)n Simple_repeat Simple_repeat 1 52 0 715 161 19 52 chr9 35749306 35749461 -82113166 + L1MA10 LINE L1 6180 6329 -5 2315 87 0 10 chr9 35749594 35749906 -82112721 - AluY SINE Alu -2 309 1 21 57 0 0 chr9 35750162 35750197 -82112430 + AT_rich Low_complexity Low_complexity 1 35 0 216 188 0 0 chr9 35751470 35751518 -82111109 + A-rich Low_complexity Low_complexity 1 48 0 967 84 0 21 chr9 35751646 35751788 -82110839 + AluY SINE Alu 1 139 -172 2151 106 7 0 chr9 35751900 35752203 -82110424 - AluSc SINE Alu -4 305 1 313 250 50 0 chr9 35752216 35752296 -82110331 - MER58 DNA MER1_type -1 2419 131 808 106 57 0 chr9 35752303 35752426 -82110201 - AluSq/x SINE Alu -183 130 1 1258 91 5 27 chr9 35752551 35752737 -82109890 - AluSp SINE Alu -12 301 120 897 52 9 0 chr9 35752743 35752858 -82109769 - AluSc SINE Alu -18 291 176 730 196 0 93 chr9 35752886 35752953 -82109674 + L1 LINE L1 3822 3894 -2252 2138 84 0 10 chr9 35752953 35753250 -82109377 + AluY SINE Alu 7 300 -11 730 196 0 93 chr9 35753250 35753386 -82109241 + L1 LINE L1 3894 4006 -2140 1528 172 38 14 chr9 35753386 35753676 -82108951 - AluJb SINE Alu -15 297 1 1184 150 35 9 chr9 35753683 35753909 -82108718 + L1 LINE L1 4119 4350 -1796 475 326 80 84 chr9 35754031 35754179 -82108448 - HAL1b LINE L1 -708 640 493 1428 190 19 35 chr9 35754179 35754490 -82108137 - AluJo SINE Alu -6 306 1 475 326 80 84 chr9 35754490 35754625 -82108002 - HAL1b LINE L1 -855 493 359 2215 99 3 10 chr9 35754625 35754939 -82107688 - AluSx SINE Alu 0 312 1 475 326 80 84 chr9 35754939 35755283 -82107344 - HAL1b LINE L1 -989 359 15 1324 108 66 150 chr9 35755429 35755602 -82107025 - AluSx SINE Alu -6 306 173 2149 115 0 0 chr9 35755602 35755907 -82106720 - AluSx SINE Alu -7 305 1 1324 108 66 150 chr9 35755907 35756067 -82106560 - AluSx SINE Alu -139 173 1 2386 65 0 7 chr9 35756078 35756387 -82106240 - AluY SINE Alu -4 307 1 924 185 15 10 chr9 35756387 35756582 -82106045 - AluJb SINE Alu -12 300 105 351 337 22 48 chr9 35756584 35756857 -82105770 + L1ME LINE L1 5393 5658 -463 2225 105 3 0 chr9 35756868 35757172 -82105455 + AluSq SINE Alu 1 305 -8 1494 128 0 4 chr9 35757181 35757407 -82105220 + AluSq SINE Alu 1 225 -88 747 95 19 0 chr9 35757407 35757512 -82105115 + AluSg/x SINE Alu 190 296 -14 1446 151 106 7 chr9 35757557 35757841 -82104786 + AluSx SINE Alu 1 312 0 1267 218 16 65 chr9 35757900 35758207 -82104420 + AluJb SINE Alu 1 292 -10 2319 71 7 0 chr9 35758213 35758510 -82104117 + AluSg SINE Alu 1 299 -11 1291 196 52 15 chr9 35758634 35758905 -82103722 + AluJb SINE Alu 1 281 -31 23 33 0 0 chr9 35758910 35758940 -82103687 + AT_rich Low_complexity Low_complexity 1 30 0 1758 202 19 60 chr9 35759219 35759700 -82102927 + MER65C LTR ERV1 1 461 0 449 236 111 14 chr9 35760323 35760467 -82102160 - L1MD3 LINE L1 -8 7987 7830 1254 170 9 106 chr9 35760609 35760938 -82101689 + AluSx SINE Alu 2 298 -4 308 77 0 0 chr9 35760939 35760978 -82101649 + Alu SINE Alu 248 286 -16 492 18 0 0 chr9 35760980 35761037 -82101590 + (CATA)n Simple_repeat Simple_repeat 4 60 0 812 163 15 0 chr9 35761037 35761172 -82101455 + AluSg/x SINE Alu 158 294 -16 984 93 16 0 chr9 35761192 35761321 -82101306 + AluJb SINE Alu 2 132 -180 21 0 0 0 chr9 35761349 35761370 -82101257 + AT_rich Low_complexity Low_complexity 1 21 0 607 134 104 75 chr9 35761551 35761685 -82100942 - FLAM_C SINE Alu -4 139 2 1626 178 15 0 chr9 35762477 35762747 -82099880 - AluJo SINE Alu -17 295 22 203 327 0 18 chr9 35763129 35763184 -82099443 + MIR SINE MIR 19 72 -136 325 298 10 10 chr9 35763383 35763487 -82099140 + MIR3 SINE MIR 3 106 -102 637 151 0 59 chr9 35763830 35763949 -82098678 - AluJ SINE Alu -12 300 189 803 148 111 0 chr9 35763950 35764085 -82098542 - AluJ SINE Alu -162 150 1 226 145 14 14 chr9 35765214 35765283 -82097344 + (TA)n Simple_repeat Simple_repeat 1 69 0 68 0 0 0 chr9 35765283 35765351 -82097276 + AT_rich Low_complexity Low_complexity 1 68 0 465 102 66 6 chr9 35765351 35765518 -82097109 + (TA)n Simple_repeat Simple_repeat 1 177 0 2127 136 7 0 chr9 35765518 35765813 -82096814 - AluSx SINE Alu -15 297 1 2235 110 0 3 chr9 35766694 35766995 -82095632 + AluSg SINE Alu 1 300 -10 1139 143 29 43 chr9 35767213 35767423 -82095204 - AluJb SINE Alu -21 291 85 2227 107 0 23 chr9 35768305 35768477 -82094150 - AluSg SINE Alu -8 302 139 2452 69 7 3 chr9 35768477 35768780 -82093847 - AluSp SINE Alu -9 304 1 2227 107 0 23 chr9 35768780 35768916 -82093711 - AluSg SINE Alu -171 139 1 2002 112 0 53 chr9 35769582 35769885 -82092742 - AluSx SINE Alu -25 287 1 352 266 52 39 chr9 35769888 35769951 -82092676 - L1ME LINE L1 -459 5662 5601 2194 124 0 3 chr9 35769951 35770250 -82092377 + AluSx SINE Alu 1 298 -14 352 266 52 39 chr9 35770250 35770340 -82092287 - L1ME LINE L1 -520 5601 5507 2542 58 0 0 chr9 35771388 35771680 -82090947 + AluY SINE Alu 2 293 -18 1436 163 17 57 chr9 35771680 35771980 -82090647 - AluJo SINE Alu -23 289 2 1233 189 42 77 chr9 35771985 35772143 -82090484 - AluJo SINE Alu -10 302 140 2487 57 0 7 chr9 35772143 35772443 -82090184 - AluY SINE Alu -13 298 1 1233 189 42 77 chr9 35772443 35772488 -82090139 - AluJo SINE Alu -172 140 95 2187 114 3 10 chr9 35772488 35772794 -82089833 + AluSx SINE Alu 1 304 -8 1233 189 42 77 chr9 35772794 35772902 -82089725 - AluJo SINE Alu -217 95 1 2069 116 3 3 chr9 35772949 35773234 -82089393 - AluSq SINE Alu -28 285 1 1699 174 0 41 chr9 35773286 35773428 -82089199 + AluJb SINE Alu 1 147 -165 2329 110 7 0 chr9 35773428 35773736 -82088891 + AluSx SINE Alu 1 310 -2 1699 174 0 41 chr9 35773736 35773909 -82088718 + AluJb SINE Alu 147 303 -9 2674 54 0 6 chr9 35773963 35774276 -82088351 + AluY SINE Alu 1 311 0 2603 54 0 22 chr9 35774286 35774603 -82088024 + AluY SINE Alu 1 310 -1 2583 54 0 0 chr9 35774609 35774903 -82087724 + AluY SINE Alu 1 294 -17 819 150 0 0 chr9 35774990 35775110 -82087517 + FLAM_C SINE Alu 1 120 -23 602 272 114 33 chr9 35775114 35775474 -82087153 + L1ME4a LINE L1 5513 5901 -220 2528 57 0 7 chr9 35775551 35775850 -82086777 + AluSp SINE Alu 1 297 -16 2223 98 3 0 chr9 35775946 35776233 -82086394 + AluSg SINE Alu 7 294 -16 551 130 94 94 chr9 35776382 35776520 -82086107 + MLT1B LTR MaLR 4 141 -249 2153 123 3 0 chr9 35776538 35776838 -82085789 - AluSx SINE Alu -11 301 1 21 0 0 0 chr9 35776838 35776859 -82085768 + AT_rich Low_complexity Low_complexity 1 21 0 1874 99 0 8 chr9 35776864 35777106 -82085521 - AluSc SINE Alu -69 240 1 916 120 8 0 chr9 35777112 35777237 -82085390 - FLAM_C SINE Alu -17 126 1 607 155 0 78 chr9 35777273 35777402 -82085225 + MER2 DNA MER2_type 2 120 -225 2082 140 0 6 chr9 35777404 35777718 -82084909 - AluSx SINE Alu 0 312 1 367 313 0 52 chr9 35777804 35777863 -82084764 + L2 LINE L2 3141 3202 -70 800 192 0 0 chr9 35777863 35777993 -82084634 - FLAM_C SINE Alu -3 130 1 367 313 0 52 chr9 35777993 35778067 -82084560 + L2 LINE L2 3202 3267 -5 586 153 31 0 chr9 35778384 35778482 -82084145 + AluJb SINE Alu 54 154 -158 2203 64 39 4 chr9 35778933 35779213 -82083414 - AluY SINE Alu -21 290 1 723 104 59 82 chr9 35779465 35779533 -82083094 + AluJo/FLAM SINE Alu 1 66 -236 2339 100 0 0 chr9 35779533 35779832 -82082795 - AluSc SINE Alu -10 299 1 723 104 59 82 chr9 35779832 35779898 -82082729 + AluJo/FLAM SINE Alu 66 132 -170 180 213 21 0 chr9 35780049 35780096 -82082531 - MIR SINE MIR -111 151 104 2482 82 3 0 chr9 35780429 35780732 -82081895 + AluSg SINE Alu 1 304 -6 2334 82 0 10 chr9 35780735 35781041 -82081586 + AluY SINE Alu 1 303 -8 2116 125 6 10 chr9 35781260 35781573 -82081054 + AluSx SINE Alu 1 312 0 950 164 14 0 chr9 35781672 35781818 -82080809 + AluSq/x SINE Alu 2 149 -163 1373 195 84 3 chr9 35781851 35781956 -82080671 + AluJb SINE Alu 3 98 -214 180 0 0 0 chr9 35781956 35781976 -82080651 + (TA)n Simple_repeat Simple_repeat 1 20 0 1373 195 84 3 chr9 35781976 35782157 -82080470 + AluJb SINE Alu 98 312 0 415 202 95 0 chr9 35782179 35782263 -82080364 + MER63 DNA MER1_type 655 746 -315 1932 148 3 0 chr9 35782270 35782587 -82080040 + AluSx SINE Alu 1 318 0 517 200 27 0 chr9 35782673 35782783 -82079844 + MIR SINE MIR 94 206 -56 436 266 8 24 chr9 35782831 35782955 -82079672 + MIR3 SINE MIR 66 187 -21 1943 92 75 58 chr9 35783120 35783413 -82079214 + AluSx SINE Alu 1 298 -14 2312 102 7 7 chr9 35783435 35783738 -82078889 + AluSx SINE Alu 1 303 -9 371 254 73 0 chr9 35784367 35784520 -82078107 - MIR3 SINE MIR -6 202 40 229 185 259 0 chr9 35784538 35784592 -82078035 - LTR33 LTR ERVL -2 519 452 2243 97 10 0 chr9 35784771 35785060 -82077567 - AluSx SINE Alu -20 292 1 291 263 256 8 chr9 35785069 35785202 -82077425 - LTR33 LTR ERVL -343 178 13 261 0 0 0 chr9 35785222 35785251 -82077376 + (TTA)n Simple_repeat Simple_repeat 2 30 0 500 130 0 50 chr9 35785277 35785377 -82077250 + AluJ/FRAM SINE Alu 217 311 -1 184 363 33 11 chr9 35786390 35786481 -82076146 - MIR SINE MIR -150 112 20 1507 194 21 21 chr9 35786520 35786809 -82075818 - AluJo SINE Alu -19 293 5 1299 157 4 22 chr9 35787034 35787263 -82075364 + AluJb SINE Alu 75 299 -13 180 304 0 0 chr9 35787534 35787580 -82075047 - L2 LINE L2 -223 3049 3004 2490 59 3 34 chr9 35787683 35788003 -82074624 - AluY SINE Alu 0 311 2 1698 178 31 0 chr9 35788137 35788429 -82074198 + AluJb SINE Alu 1 301 -11 598 109 36 0 chr9 35788528 35788665 -82073962 + (TA)n Simple_repeat Simple_repeat 2 143 0 1334 202 23 23 chr9 35788747 35789004 -82073623 - AluJb SINE Alu -55 257 1 243 239 0 0 chr9 35789032 35789078 -82073549 + Alu SINE Alu 57 102 -200 270 138 0 0 chr9 35789086 35789144 -82073483 + (GGAA)n Simple_repeat Simple_repeat 3 60 0 283 276 58 45 chr9 35789272 35789337 -82073290 - L1ME LINE L1 -457 5664 5601 2065 137 0 7 chr9 35789337 35789637 -82072990 + AluSx SINE Alu 1 298 -14 283 276 58 45 chr9 35789637 35789727 -82072900 - L1ME LINE L1 -520 5601 5507 2515 60 3 0 chr9 35790775 35791075 -82071552 + AluY SINE Alu 2 302 -9 483 130 0 0 chr9 35791343 35791412 -82071215 - AluJ/FLAM SINE Alu -243 69 1 522 299 68 40 chr9 35791962 35792287 -82070340 - L2 LINE L2 -2 3311 2978 1508 167 26 49 chr9 35792649 35792831 -82069796 - AluJb SINE Alu -13 299 125 2001 149 0 13 chr9 35792831 35793146 -82069481 - AluSx SINE Alu -1 311 1 1508 167 26 49 chr9 35793146 35793269 -82069358 - AluJb SINE Alu -187 125 1 503 164 8 90 chr9 35793780 35793902 -82068725 - Tigger1 DNA MER2_type -143 2275 2164 536 163 22 0 chr9 35793904 35793996 -82068631 - L1MA4A LINE L1 -153 6150 6057 1378 168 0 9 chr9 35793997 35794229 -82068398 + AluSg/x SINE Alu 76 305 -5 1832 148 4 0 chr9 35794258 35794535 -82068092 - AluJb SINE Alu -34 278 1 2752 159 25 50 chr9 35794535 35794899 -82067728 - L1MA4A LINE L1 -230 6073 5728 1099 126 0 16 chr9 35794899 35795080 -82067547 + L1MA4A LINE L1 6124 6302 -1 2752 159 25 50 chr9 35795080 35795313 -82067314 - L1MA4A LINE L1 -575 5728 5491 588 200 0 0 chr9 35795332 35795427 -82067200 - FRAM SINE Alu -62 114 20 1095 133 45 27 chr9 35795427 35795581 -82067046 - L1MA4A LINE L1 -746 5400 5331 1623 157 6 61 chr9 35795581 35795894 -82066733 - AluJo SINE Alu -16 296 1 1095 133 45 27 chr9 35795894 35796008 -82066619 - L1MA4A LINE L1 -815 5331 5221 1901 147 28 0 chr9 35796071 35796356 -82066271 + AluSx SINE Alu 1 293 -19 2170 111 13 7 chr9 35797097 35797404 -82065223 + AluSg SINE Alu 1 309 -1 713 137 0 14 chr9 35798393 35798539 -82064088 + (TTCC)n Simple_repeat Simple_repeat 3 146 0 243 239 0 0 chr9 35798547 35798593 -82064034 - Alu SINE Alu -200 102 57 1361 220 8 0 chr9 35798621 35798876 -82063751 + AluJb SINE Alu 1 257 -55 488 137 46 0 chr9 35798958 35799111 -82063516 + (TA)n Simple_repeat Simple_repeat 2 161 0 325 239 11 33 chr9 35799118 35799210 -82063417 + L1MC4 LINE L1 6614 6703 -1339 1698 178 31 0 chr9 35799309 35799601 -82063026 - AluJb SINE Alu -11 301 1 2569 48 3 19 chr9 35799735 35800050 -82062577 + AluY SINE Alu 2 311 0 1433 91 0 25 chr9 35800182 35800381 -82062246 - AluSg/x SINE Alu -18 294 101 2129 79 50 4 chr9 35800392 35800670 -82061957 - AluSc SINE Alu -18 291 1 1573 97 5 5 chr9 35800675 35800891 -82061736 - AluSp SINE Alu -11 302 87 1424 213 11 11 chr9 35801021 35801307 -82061320 - AluJo SINE Alu -18 294 9 2107 107 0 28 chr9 35801467 35801780 -82060847 - AluY SINE Alu 0 305 1 746 143 0 45 chr9 35801885 35802018 -82060609 - FLAM_C SINE Alu -5 128 2 922 145 0 14 chr9 35802234 35802379 -82060248 - AluSg/x SINE Alu -10 302 160 1503 138 5 13 chr9 35802379 35802603 -82060024 + AluSc SINE Alu 72 293 -16 25 0 0 0 chr9 35802904 35802929 -82059698 + AT_rich Low_complexity Low_complexity 1 25 0 2185 84 0 0 chr9 35802933 35803206 -82059421 + AluSg SINE Alu 1 273 -37 482 190 13 26 chr9 35803314 35803546 -82059081 + GA-rich Low_complexity Low_complexity 1 229 0 1550 184 7 30 chr9 35803933 35804232 -82058395 + AluJb SINE Alu 1 292 -20 507 143 114 32 chr9 35804251 35804417 -82058210 + Tigger1 DNA MER2_type 2182 2418 0 2241 109 0 0 chr9 35805470 35805772 -82056855 + AluSc SINE Alu 1 302 -7 1935 158 10 7 chr9 35805885 35806195 -82056432 + AluJb SINE Alu 1 311 -1 2256 185 109 4 chr9 35806250 35806775 -82055852 + L1MB7 LINE L1 5502 6081 -103 870 130 0 23 chr9 35807223 35807354 -82055273 + AluJo SINE Alu 1 128 -174 917 171 0 50 chr9 35808412 35808593 -82054034 + AluJo SINE Alu 129 300 -12 2170 90 20 7 chr9 35808655 35808955 -82053672 + AluY SINE Alu 1 304 -7 189 0 0 0 chr9 35809094 35809115 -82053512 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 576 336 32 7 chr9 35809177 35809454 -82053173 - L1MC4a LINE L1 -1961 5847 5564 241 138 0 138 chr9 35809959 35810024 -82052603 - MER58 DNA MER1_type 0 2420 2365 603 128 59 0 chr9 35810025 35810127 -82052500 - FLAM_C SINE Alu -35 108 1 1327 183 27 84 chr9 35810296 35810630 -82051997 + MER68 LTR ERV1 1 315 -247 1721 171 3 13 chr9 35810978 35811282 -82051345 + AluJb SINE Alu 1 301 -11 578 263 8 8 chr9 35811304 35811437 -82051190 + FLAM_C SINE Alu 1 133 0 2171 86 0 56 chr9 35812306 35812652 -82049975 + AluY SINE Alu 1 311 0 2114 99 3 3 chr9 35812859 35813141 -82049486 + AluSx SINE Alu 1 282 -30 2408 58 13 26 chr9 35813497 35813809 -82048818 - AluY SINE Alu -3 308 1 230 233 0 0 chr9 35814327 35814370 -82048257 + (CA)n Simple_repeat Simple_repeat 2 44 0 1041 146 131 88 chr9 35814482 35814756 -82047871 - AluJo SINE Alu -16 286 1 2422 97 6 0 chr9 35814774 35815085 -82047542 - AluSq SINE Alu 0 313 1 1735 156 30 27 chr9 35816306 35816607 -82046020 - AluJo SINE Alu -10 302 1 2131 135 0 0 chr9 35817348 35817645 -82044982 - AluSx SINE Alu -15 297 1 288 0 0 0 chr9 35817708 35817740 -82044887 + (CA)n Simple_repeat Simple_repeat 2 33 0 2452 75 0 3 chr9 35818677 35818984 -82043643 + AluSg SINE Alu 1 306 -4 2303 92 10 3 chr9 35818985 35819290 -82043337 + AluSp SINE Alu 1 307 -6 1857 158 0 32 chr9 35819756 35820067 -82042560 - AluSx SINE Alu -11 301 1 1390 180 107 0 chr9 35820274 35820546 -82042081 + AluJo SINE Alu 1 301 -11 26 0 0 0 chr9 35820664 35820690 -82041937 + AT_rich Low_complexity Low_complexity 1 26 0 668 271 18 41 chr9 35820701 35821011 -82041616 - L1ME1 LINE L1 -24 6140 5838 1572 188 3 29 chr9 35821392 35821700 -82040927 - AluJb SINE Alu -12 300 1 2092 121 14 0 chr9 35821856 35822145 -82040482 - AluSq SINE Alu -20 293 1 21 0 0 0 chr9 35822145 35822166 -82040461 + AT_rich Low_complexity Low_complexity 1 21 0 627 196 8 53 chr9 35822172 35822305 -82040322 + FLAM_A SINE Alu 1 127 -6 2087 110 7 20 chr9 35822305 35822604 -82040023 + AluSx SINE Alu 1 295 -17 1310 196 58 31 chr9 35823377 35823668 -82038959 - AluJo SINE Alu -13 299 1 2140 128 3 16 chr9 35823932 35824238 -82038389 + AluSq SINE Alu 1 302 -11 22 56 0 0 chr9 35825648 35825684 -82036943 + AT_rich Low_complexity Low_complexity 1 36 0 2235 93 7 0 chr9 35825804 35826132 -82036495 + AluSg SINE Alu 1 330 0 2133 122 0 7 chr9 35826133 35826436 -82036191 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr9 35826436 35826457 -82036170 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 35827129 35827154 -82035473 + AT_rich Low_complexity Low_complexity 1 25 0 1057 185 0 6 chr9 35827992 35828165 -82034462 + FAM SINE Alu 1 172 -3 748 249 131 19 chr9 35828191 35828569 -82034058 - L1ME1 LINE L1 -622 5544 5272 585 160 28 9 chr9 35828587 35828693 -82033934 - L1MB4 LINE L1 -25 6155 6048 891 242 82 40 chr9 35828715 35829205 -82033422 - L1M4 LINE L1 -817 5329 4861 2215 94 0 7 chr9 35829205 35829502 -82033125 + AluY SINE Alu 1 295 -16 891 242 82 40 chr9 35829502 35829604 -82033023 - L1M4 LINE L1 -1285 4861 4765 1947 146 9 35 chr9 35829604 35829920 -82032707 + AluSx SINE Alu 1 308 -4 891 242 82 40 chr9 35829920 35830228 -82032399 - L1M4 LINE L1 -1381 4765 4317 992 259 163 14 chr9 35830441 35830931 -82031696 - L1ME1 LINE L1 -1616 4530 3968 290 136 198 12 chr9 35832018 35832099 -82030528 - L1ME1 LINE L1 -2190 3956 3861 2041 181 43 89 chr9 35832124 35832683 -82029944 - L1MB7 LINE L1 -25 6159 5627 1258 223 39 29 chr9 35832711 35833020 -82029607 + AluJo SINE Alu 1 312 0 1890 130 25 7 chr9 35833027 35833303 -82029324 + AluSx SINE Alu 5 285 -27 1599 151 4 20 chr9 35833357 35833609 -82029018 - AluJb SINE Alu -1 311 64 252 326 39 6 chr9 35833614 35833795 -82028832 - L1ME1 LINE L1 -2798 3348 3162 1528 188 14 14 chr9 35833876 35834169 -82028458 - AluJb SINE Alu -19 293 1 2379 88 3 3 chr9 35834234 35834541 -82028086 - AluSx SINE Alu -5 307 1 553 247 45 39 chr9 35836261 35836439 -82026188 + MER20 DNA MER1_type 41 219 0 1516 183 23 109 chr9 35837196 35837363 -82025264 + L1MB8 LINE L1 5004 5184 -999 1354 189 60 0 chr9 35837363 35837644 -82024983 + AluJo SINE Alu 1 298 -14 1516 183 23 109 chr9 35837644 35837664 -82024963 + L1MB8 LINE L1 5184 5204 -979 1717 198 3 0 chr9 35837664 35837962 -82024665 + AluJb SINE Alu 1 299 -13 1516 183 23 109 chr9 35837962 35838108 -82024519 + L1MB8 LINE L1 5204 5361 -822 1706 133 78 0 chr9 35838108 35838378 -82024249 + AluSx SINE Alu 1 291 -21 1516 183 23 109 chr9 35838378 35838588 -82024039 + L1MB8 LINE L1 5361 5587 -596 2354 92 0 7 chr9 35838588 35838894 -82023733 + AluSg SINE Alu 1 304 -6 1516 183 23 109 chr9 35838894 35838955 -82023672 + L1MB8 LINE L1 5587 5552 -631 2311 74 13 26 chr9 35838955 35839264 -82023363 + AluY SINE Alu 1 305 -6 1516 183 23 109 chr9 35839264 35839354 -82023273 + L1MB8 LINE L1 5551 5647 -536 871 135 0 0 chr9 35839372 35839498 -82023129 + FLAM_C SINE Alu 1 126 -17 574 174 9 0 chr9 35839694 35839809 -82022818 + L1MB8 LINE L1 5760 5875 -309 1364 142 51 34 chr9 35839833 35840129 -82022498 + L1MB8 LINE L1 5853 6153 -25 1965 132 0 48 chr9 35840153 35840464 -82022163 + AluSx SINE Alu 1 296 -16 578 118 59 0 chr9 35840664 35840749 -82021878 - 5S rRNA rRNA -31 90 1 1330 154 39 0 chr9 35840829 35841037 -82021590 + AluJb SINE Alu 87 302 -10 470 281 118 67 chr9 35841254 35841552 -82021075 - L1M4 LINE L1 -1141 5005 4667 2179 113 23 3 chr9 35841552 35841852 -82020775 - AluSq SINE Alu -7 306 1 470 281 118 67 chr9 35841852 35842076 -82020551 - L1M4 LINE L1 -1479 4667 4456 576 160 0 20 chr9 35842154 35842254 -82020373 - FLAM_A SINE Alu 0 142 45 286 290 48 38 chr9 35842578 35842764 -82019863 - L1M4 LINE L1 -2244 3902 3715 1125 117 0 19 chr9 35842867 35843002 -82019625 + AluSq SINE Alu 1 134 -179 2542 53 0 3 chr9 35843002 35843301 -82019326 + AluY SINE Alu 1 298 -13 1125 117 0 19 chr9 35843301 35843327 -82019300 + AluSq SINE Alu 134 159 -154 563 129 0 103 chr9 35843429 35843545 -82019082 + AluSq SINE Alu 138 241 -72 2171 99 0 20 chr9 35843578 35843872 -82018755 - AluSx SINE Alu -24 288 1 2110 134 0 3 chr9 35845068 35845366 -82017261 + AluSx SINE Alu 1 297 -15 229 272 136 12 chr9 35845780 35845861 -82016766 - MIR3 SINE MIR -2 206 116 213 321 22 15 chr9 35846319 35846453 -82016174 + CT-rich Low_complexity Low_complexity 3 137 0 37 23 0 0 chr9 35846857 35846901 -82015726 + AT_rich Low_complexity Low_complexity 1 44 0 821 197 0 0 chr9 35846902 35847024 -82015603 + FLAM_C SINE Alu 2 123 -20 306 0 0 0 chr9 35847024 35847058 -82015569 + (CA)n Simple_repeat Simple_repeat 2 35 0 27 62 0 0 chr9 35847064 35847112 -82015515 + AT_rich Low_complexity Low_complexity 1 48 0 9061 176 36 9 chr9 35847265 35847853 -82014774 + L1P5 LINE L1 3414 3984 -2167 2298 95 0 16 chr9 35847853 35848159 -82014468 + AluSx SINE Alu 1 301 -11 9061 176 36 9 chr9 35848159 35849897 -82012730 + L1P5 LINE L1 3984 5791 -360 245 125 0 21 chr9 35849919 35849967 -82012660 + (TA)n Simple_repeat Simple_repeat 2 48 0 581 311 56 6 chr9 35850546 35850726 -82011901 + MER91A DNA MER1_type 8 196 0 330 267 130 27 chr9 35850751 35850897 -82011730 + L2 LINE L2 3108 3268 -4 2243 105 20 7 chr9 35851081 35851377 -82011250 - AluSx SINE Alu -12 300 1 2346 93 7 0 chr9 35851408 35851710 -82010917 - AluY SINE Alu -7 304 1 489 260 110 58 chr9 35851741 35851968 -82010659 + LTR33A LTR ERVL 21 268 -255 1943 90 27 111 chr9 35851968 35852301 -82010326 - AluSx SINE Alu -7 305 1 489 260 110 58 chr9 35852301 35852365 -82010262 + LTR33A LTR ERVL 268 327 -196 308 287 23 0 chr9 35852420 35852507 -82010120 - L1MC4 LINE L1 -1339 6703 6615 237 185 92 0 chr9 35852523 35852588 -82010039 - L1MC4 LINE L1 -1875 5933 5863 406 260 0 0 chr9 35852592 35852680 -82009947 - L1MC4 LINE L1 -530 5591 5513 879 154 15 0 chr9 35852681 35852811 -82009816 + FLAM_C SINE Alu 2 133 0 1831 110 8 4 chr9 35852843 35853098 -82009529 - AluSx SINE Alu -11 301 46 869 175 65 92 chr9 35853199 35853324 -82009303 - AluJb SINE Alu -100 212 85 1548 172 0 55 chr9 35853324 35853460 -82009167 + AluJo SINE Alu 1 143 -169 1899 162 0 13 chr9 35853460 35853763 -82008864 + AluJb SINE Alu 1 299 -13 1855 168 3 3 chr9 35853768 35854077 -82008550 + AluSx SINE Alu 1 309 -3 207 0 0 0 chr9 35854080 35854103 -82008524 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 1548 172 0 55 chr9 35854103 35854247 -82008380 + AluJo SINE Alu 149 275 -37 869 175 65 92 chr9 35854247 35854338 -82008289 - AluJb SINE Alu -227 85 2 558 281 100 20 chr9 35854338 35854423 -82008204 - L1MC4 LINE L1 -667 5499 5422 2292 101 0 3 chr9 35854423 35854719 -82007908 + AluSg SINE Alu 1 295 -15 558 281 100 20 chr9 35854719 35855071 -82007556 - L1MC4 LINE L1 -744 5422 5026 2337 97 3 0 chr9 35855654 35855963 -82006664 - AluY SINE Alu -1 310 1 212 224 20 0 chr9 35856058 35856107 -82006520 + L2 LINE L2 3264 3313 0 2351 97 3 10 chr9 35856460 35856771 -82005856 - AluSp SINE Alu -4 309 1 2076 130 3 0 chr9 35856771 35857064 -82005563 - AluSx SINE Alu -16 296 3 2073 103 30 17 chr9 35857066 35857366 -82005261 - AluSx SINE Alu -8 304 1 1081 188 0 0 chr9 35857369 35857545 -82005082 - AluJ SINE Alu -8 304 129 962 189 17 6 chr9 35857587 35857762 -82004865 - AluJb SINE Alu -135 177 1 207 0 0 0 chr9 35857762 35857785 -82004842 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 1122 188 16 5 chr9 35857787 35857979 -82004648 - AluJb SINE Alu -32 280 87 432 120 40 53 chr9 35857982 35858057 -82004570 - AluJ SINE Alu -175 137 64 1610 129 40 63 chr9 35858121 35858424 -82004203 + AluJb SINE Alu 1 296 -16 233 234 0 0 chr9 35858499 35858546 -82004081 - L3b LINE CR1 0 1583 1537 948 148 12 0 chr9 35858546 35858708 -82003919 - AluJb SINE Alu -12 300 137 211 308 64 0 chr9 35858709 35858787 -82003840 - MIR3 SINE MIR -40 168 86 432 109 0 16 chr9 35859499 35859563 -82003064 + Alu SINE Alu 2 64 -254 1853 108 0 0 chr9 35859577 35859818 -82002809 + AluSx SINE Alu 35 275 -37 237 65 0 0 chr9 35859821 35859852 -82002775 + (CAA)n Simple_repeat Simple_repeat 3 33 0 2655 181 52 24 chr9 35859868 35860409 -82002218 - MER21A LTR ERV1 0 931 376 1075 170 55 85 chr9 35860415 35860455 -82002172 - MER21A LTR ERV1 -668 263 223 1668 120 132 0 chr9 35860455 35860713 -82001914 - AluSx SINE Alu -20 292 1 1075 170 55 85 chr9 35860713 35860906 -82001721 - MER21A LTR ERV1 -708 223 37 486 0 0 0 chr9 35860906 35860960 -82001667 + (TG)n Simple_repeat Simple_repeat 2 55 0 1075 170 55 85 chr9 35860960 35860996 -82001631 - MER21A LTR ERV1 -894 37 1 913 201 148 27 chr9 35861010 35861383 -82001244 - L1MC5 LINE L1 -136 7825 7408 968 176 0 18 chr9 35861429 35861599 -82001028 + AluJo SINE Alu 122 288 -24 438 262 98 0 chr9 35861714 35861836 -82000791 - L2 LINE L2 -3 3269 3136 1521 152 152 8 chr9 35862326 35862590 -82000037 + AluSx SINE Alu 1 302 0 661 102 22 22 chr9 35863143 35863280 -81999347 + (TCCCC)n Simple_repeat Simple_repeat 4 140 0 1394 152 25 118 chr9 35863282 35863460 -81999167 - AluJo SINE Alu -24 288 150 1822 135 43 3 chr9 35863460 35863742 -81998885 - AluJb SINE Alu -19 293 1 1394 152 25 118 chr9 35863742 35863878 -81998749 - AluJo SINE Alu -162 150 3 2527 47 7 3 chr9 35864365 35864662 -81997965 + AluY SINE Alu 1 298 -13 963 159 46 0 chr9 35865100 35865251 -81997376 + FRAM SINE Alu 1 158 -8 1720 158 13 23 chr9 35865627 35865930 -81996697 + AluJb SINE Alu 1 300 -12 2141 86 79 0 chr9 35866266 35866546 -81996081 + AluSp SINE Alu 1 302 -11 207 0 0 0 chr9 35866565 35866588 -81996039 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 235 271 0 0 chr9 35866777 35866836 -81995791 - L1MC4 LINE L1 -1336 6706 6648 26 30 0 0 chr9 35867233 35867266 -81995361 + AT_rich Low_complexity Low_complexity 1 33 0 1239 188 73 8 chr9 35867269 35867530 -81995097 - L1MB5 LINE L1 -8 6166 5889 824 148 99 25 chr9 35867530 35867692 -81994935 - AluJo/FRAM SINE Alu -5 307 134 1553 145 25 0 chr9 35867692 35867934 -81994693 - AluJb SINE Alu -2 310 63 963 125 10 95 chr9 35867936 35868136 -81994491 - L1MA6 LINE L1 -171 6129 5947 2034 125 18 0 chr9 35868304 35868585 -81994042 - AluSx SINE Alu -26 286 1 340 66 49 0 chr9 35868617 35868678 -81993949 - L1PA16 LINE L1 0 6166 6103 812 177 14 0 chr9 35868692 35868833 -81993794 - L1MA6 LINE L1 -338 5962 5820 856 102 0 16 chr9 35868833 35868961 -81993666 - AluSg/x SINE Alu 0 310 185 1684 92 0 9 chr9 35869020 35869247 -81993380 + AluSc SINE Alu 1 225 -84 1841 146 77 5 chr9 35869355 35869748 -81992879 - L1MB5 LINE L1 -731 5602 5188 2227 123 3 3 chr9 35869751 35870061 -81992566 - AluSx SINE Alu -2 310 1 2356 106 0 0 chr9 35870433 35870736 -81991891 - AluSg SINE Alu -7 303 1 2086 121 0 4 chr9 35870736 35871017 -81991610 - AluSc SINE Alu -29 280 1 1165 52 7 0 chr9 35871018 35871154 -81991473 - AluSq/x SINE Alu -175 137 1 2222 95 0 7 chr9 35871260 35871544 -81991083 - AluSg SINE Alu -28 282 1 595 173 0 2 chr9 35872078 35872288 -81990339 + AluJ SINE Alu 3 263 -49 441 0 0 0 chr9 35872308 35872357 -81990270 + (TG)n Simple_repeat Simple_repeat 2 50 0 1945 98 66 7 chr9 35872403 35872689 -81989938 - AluSq SINE Alu -10 303 1 2272 77 44 0 chr9 35872813 35873111 -81989516 - AluY SINE Alu 0 311 1 1599 143 0 0 chr9 35873244 35873475 -81989152 - AluSx SINE Alu -81 231 1 1719 98 0 0 chr9 35874394 35874618 -81988009 - AluSg/x SINE Alu -4 308 85 870 295 137 8 chr9 35874699 35875184 -81987443 - L2 LINE L2 -2 3311 2761 3562 137 86 16 chr9 35875623 35875679 -81986948 + Tigger3b DNA MER2_type 21 72 -2956 823 157 0 15 chr9 35875679 35875813 -81986814 + FLAM_C SINE Alu 1 132 -1 3562 137 86 16 chr9 35875813 35876442 -81986185 + Tigger3b DNA MER2_type 72 754 -477 255 189 0 0 chr9 35876478 35876531 -81986096 + (TG)n Simple_repeat Simple_repeat 2 54 0 263 219 0 0 chr9 35877040 35877104 -81985523 + L1MC4 LINE L1 6640 6703 -1339 243 240 0 62 chr9 35877088 35877184 -81985443 - L1MC4 LINE L1 -1339 6703 6614 * 246 161 18 36 chr9 35877184 35877240 -81985387 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 24 53 0 0 chr9 35877683 35877721 -81984906 + AT_rich Low_complexity Low_complexity 1 38 0 2254 94 3 3 chr9 35878101 35878389 -81984238 - AluSx SINE Alu -18 294 7 804 201 43 42 chr9 35878427 35878832 -81983795 + MLT1H1 LTR MaLR 10 555 0 25 0 0 0 chr9 35878838 35878863 -81983764 + AT_rich Low_complexity Low_complexity 1 25 0 246 32 0 0 chr9 35878877 35878908 -81983719 + (TTA)n Simple_repeat Simple_repeat 1 31 0 480 224 0 0 chr9 35878921 35879006 -81983621 - FLAM_A SINE Alu -56 86 2 664 188 8 0 chr9 35879016 35879133 -81983494 - L1MC1 LINE L1 0 6333 6216 1975 146 0 25 chr9 35879136 35879452 -81983175 - AluJo SINE Alu -4 308 1 2228 104 6 19 chr9 35879546 35879862 -81982765 - AluSx SINE Alu 0 312 1 734 215 126 60 chr9 35880019 35880321 -81982306 + L1MC4a LINE L1 5583 5904 -1904 35 41 0 0 chr9 35880591 35880640 -81981987 + AT_rich Low_complexity Low_complexity 1 49 0 2103 127 0 20 chr9 35881143 35881442 -81981185 + AluSx SINE Alu 1 293 -19 2009 113 35 3 chr9 35881466 35881750 -81980877 + AluSc SINE Alu 1 293 -16 193 278 19 0 chr9 35882043 35882097 -81980530 - L2 LINE L2 -8 3264 3210 2188 82 7 43 chr9 35882188 35882331 -81980296 + AluSg SINE Alu 1 129 -181 2329 101 0 10 chr9 35882331 35882639 -81979988 + AluSq SINE Alu 1 305 -8 2188 82 7 43 chr9 35882639 35882800 -81979827 + AluSg SINE Alu 129 294 -16 2278 184 30 11 chr9 35882851 35883364 -81979263 + Tigger7 DNA MER2_type 1 2490 -1 293 102 0 0 chr9 35883562 35883611 -81979016 + FLAM_A SINE Alu 85 126 -7 231 167 0 0 chr9 35883720 35883762 -81978865 + (CAGCC)n Simple_repeat Simple_repeat 5 46 0 216 97 0 0 chr9 35885731 35885762 -81976865 + (A)n Simple_repeat Simple_repeat 1 31 0 2376 102 0 0 chr9 35885774 35886087 -81976540 + AluSq SINE Alu 1 313 0 230 279 29 31 chr9 35886668 35886819 -81975808 + MIR3 SINE MIR 4 150 -66 2176 133 3 0 chr9 35886997 35887305 -81975322 - AluJo SINE Alu -3 309 1 528 283 80 22 chr9 35887434 35887660 -81974967 + Charlie8 DNA MER1_type 44 282 -2135 303 181 0 42 chr9 35887695 35887767 -81974860 - L1MB8 LINE L1 -142 6036 5968 827 138 41 0 chr9 35887776 35887899 -81974728 - FLAM_C SINE Alu -5 128 1 1827 161 3 16 chr9 35887971 35888275 -81974352 + AluJb SINE Alu 1 300 -12 253 209 23 58 chr9 35889231 35889317 -81973310 - MIR SINE MIR -76 186 104 434 340 43 39 chr9 35889652 35890135 -81972492 + L2 LINE L2 2337 2821 -493 25 0 0 0 chr9 35890361 35890386 -81972241 + AT_rich Low_complexity Low_complexity 1 25 0 204 319 12 102 chr9 35890387 35890457 -81972170 + L2 LINE L2 3118 3193 -79 1943 152 0 23 chr9 35890457 35890759 -81971868 + AluJo SINE Alu 3 297 -15 204 319 12 102 chr9 35890759 35890810 -81971817 + L2 LINE L2 3193 3223 -49 2026 137 13 3 chr9 35890810 35891117 -81971510 + AluSx SINE Alu 1 310 -2 204 319 12 102 chr9 35891117 35891160 -81971467 + L2 LINE L2 3223 3268 -4 813 280 113 46 chr9 35891381 35891474 -81971153 - L2 LINE L2 0 3313 3228 1690 161 17 27 chr9 35891474 35891766 -81970861 + AluJo SINE Alu 1 289 -23 813 280 113 46 chr9 35891766 35892368 -81970259 - L2 LINE L2 -85 3228 2584 231 259 141 0 chr9 35892687 35892772 -81969855 - MIR3 SINE MIR -10 198 102 223 237 53 40 chr9 35892919 35892995 -81969632 + MIR SINE MIR 186 262 0 214 308 0 0 chr9 35893099 35893151 -81969476 - MIR3 SINE MIR -48 160 109 516 198 0 0 chr9 35893158 35893264 -81969363 + FRAM SINE Alu 71 176 0 227 216 0 20 chr9 35894046 35894097 -81968530 - L2 LINE L2 -4 3268 3219 2333 49 3 11 chr9 35895521 35895830 -81966797 + AluY SINE Alu 1 307 0 312 285 63 51 chr9 35895916 35896074 -81966553 + MIR SINE MIR 91 250 -12 1812 65 0 55 chr9 35896079 35896388 -81966239 + AluY SINE Alu 1 292 -19 236 232 87 29 chr9 35896761 35896830 -81965797 - MIR SINE MIR -71 191 119 28 29 0 0 chr9 35897085 35897120 -81965507 + AT_rich Low_complexity Low_complexity 1 35 0 406 360 35 27 chr9 35897360 35897621 -81965006 + L2 LINE L2 2526 2788 -526 1632 177 6 61 chr9 35898761 35899089 -81963538 + AluJo SINE Alu 1 310 -2 309 306 68 50 chr9 35899203 35899425 -81963202 + MIR SINE MIR 20 245 -17 1721 273 34 62 chr9 35900208 35900882 -81961745 + MLT2F LTR ERVL 1 655 -8 235 158 123 0 chr9 35900926 35900983 -81961644 - L2 LINE L2 -215 3057 2994 1146 223 24 24 chr9 35901383 35901679 -81960948 + AluJb SINE Alu 3 298 -4 1794 140 15 11 chr9 35901853 35902118 -81960509 - AluSx SINE Alu -46 266 1 2509 78 0 0 chr9 35902489 35902798 -81959829 - AluSc SINE Alu 0 309 1 2039 131 7 0 chr9 35903199 35903496 -81959131 + AluSq SINE Alu 1 299 -14 2431 95 38 7 chr9 35903505 35903870 -81958757 + L1MA1 LINE L1 5731 6119 -183 1991 157 0 0 chr9 35903872 35904159 -81958468 + AluSx SINE Alu 1 287 -25 816 136 15 15 chr9 35904181 35904313 -81958314 + FLAM_C SINE Alu 1 132 -1 2190 110 0 3 chr9 35904319 35904609 -81958018 + AluSc SINE Alu 1 289 -20 255 298 61 35 chr9 35904717 35904831 -81957796 - MIR SINE MIR -140 122 6 2289 106 0 6 chr9 35904881 35905192 -81957435 + AluSg SINE Alu 1 309 -1 347 200 163 22 chr9 35905824 35905959 -81956668 - L1ME4a LINE L1 0 6121 5968 262 240 13 13 chr9 35906068 35906143 -81956484 - MIR SINE MIR -92 116 42 490 288 29 0 chr9 35906614 35906753 -81955874 + MIR SINE MIR 8 150 -112 1006 97 8 0 chr9 35906753 35906887 -81955740 + AluSq/x SINE Alu 1 135 -177 2310 102 3 3 chr9 35906887 35907191 -81955436 + AluSq SINE Alu 1 304 -9 1646 167 59 14 chr9 35907595 35907883 -81954744 + AluJb SINE Alu 1 301 -11 184 304 76 25 chr9 35907997 35908076 -81954551 - MIR3 SINE MIR -45 163 81 2905 13 0 0 chr9 35908763 35909074 -81953553 + AluYa5 SINE Alu 1 311 0 2215 129 0 0 chr9 35909784 35910086 -81952541 - AluSx SINE Alu -10 302 1 354 339 110 8 chr9 35910134 35910370 -81952257 + MIR SINE MIR 3 262 0 254 70 0 47 chr9 35910647 35910690 -81951937 - MER5B DNA MER1_type -16 162 122 3354 131 68 11 chr9 35910692 35911266 -81951361 + L1MB7 LINE L1 5524 6130 -54 969 140 60 0 chr9 35911283 35911433 -81951194 - U2 snRNA snRNA -1 187 29 291 149 0 0 chr9 35911460 35911507 -81951120 - U2 snRNA snRNA -141 47 1 2242 117 0 0 chr9 35911530 35911839 -81950788 + AluSq SINE Alu 1 309 -4 2012 138 0 19 chr9 35911845 35912156 -81950471 + AluJb SINE Alu 1 305 -7 297 194 0 42 chr9 35912196 35912268 -81950359 + L1MB7 LINE L1 6097 6165 -19 264 228 0 18 chr9 35912278 35912335 -81950292 - MER5B DNA MER1_type -49 129 74 1832 241 62 90 chr9 35912351 35912766 -81949861 + L1ME3A LINE L1 5173 5598 -572 1940 137 0 23 chr9 35912766 35913065 -81949562 + AluJb SINE Alu 21 312 0 1832 241 62 90 chr9 35913065 35913655 -81948972 + L1ME3A LINE L1 5598 6168 -2 21 0 0 0 chr9 35913783 35913804 -81948823 + AT_rich Low_complexity Low_complexity 1 21 0 1572 148 82 59 chr9 35914106 35914253 -81948374 + AluJo SINE Alu 1 143 -169 2518 71 0 10 chr9 35914253 35914564 -81948063 + AluY SINE Alu 1 308 -3 1572 148 82 59 chr9 35914564 35914721 -81947906 + AluJo SINE Alu 143 312 0 2305 96 0 0 chr9 35914812 35915123 -81947504 + AluSx SINE Alu 1 312 0 795 302 31 43 chr9 35915686 35916130 -81946497 + MLT1K LTR MaLR 142 580 -8 1090 161 6 17 chr9 35916513 35916687 -81945940 + FAM SINE Alu 4 175 0 1794 171 7 13 chr9 35916964 35917268 -81945359 + AluJo SINE Alu 1 302 -10 414 0 0 0 chr9 35917609 35917655 -81944972 + (CA)n Simple_repeat Simple_repeat 1 46 0 2269 123 7 0 chr9 35919352 35919660 -81942967 - AluSx SINE Alu -2 310 1 588 247 6 62 chr9 35920103 35920281 -81942346 + MIR3 SINE MIR 35 202 -6 2225 88 11 67 chr9 35920574 35920947 -81941680 + MER4A LTR ERV1 1 352 -312 426 103 0 29 chr9 35920987 35921055 -81941572 + MER4A LTR ERV1 356 421 -243 555 151 216 29 chr9 35921162 35921301 -81941326 + MER4C LTR ERV1 301 465 0 2268 62 101 146 chr9 35921859 35921958 -81940669 + L1ME2 LINE L1 5278 5380 -954 2152 122 7 0 chr9 35921958 35922253 -81940374 + AluSx SINE Alu 1 297 -15 2324 70 17 7 chr9 35922253 35922553 -81940074 + AluY SINE Alu 1 303 -8 2268 62 101 146 chr9 35922553 35922726 -81939901 + L1ME2 LINE L1 5379 5558 -776 1589 160 80 21 chr9 35922726 35923013 -81939614 - AluJo SINE Alu -8 304 1 2268 62 101 146 chr9 35923013 35923123 -81939504 + L1ME2 LINE L1 5558 5671 -663 1487 80 45 5 chr9 35923123 35923322 -81939305 + AluSp SINE Alu 90 296 -17 2268 62 101 146 chr9 35923322 35923637 -81938990 + L1ME2 LINE L1 5671 5999 -335 246 154 0 0 chr9 35923637 35923676 -81938951 + MER3 DNA MER1_type 11 49 -160 2268 62 101 146 chr9 35923676 35923801 -81938826 + L1ME2 LINE L1 5999 6334 0 371 97 0 16 chr9 35923876 35923938 -81938689 + (TAGG)n Simple_repeat Simple_repeat 1 61 0 321 26 0 0 chr9 35923952 35923990 -81938637 + (CAGA)n Simple_repeat Simple_repeat 3 40 0 1613 146 7 80 chr9 35923990 35924155 -81938472 - AluJo SINE Alu -32 280 143 1889 167 3 7 chr9 35924155 35924464 -81938163 + AluJb SINE Alu 1 308 0 1613 146 7 80 chr9 35924464 35924598 -81938029 - AluJo SINE Alu -169 143 1 2606 50 0 0 chr9 35924698 35924996 -81937631 + AluY SINE Alu 1 298 -13 2499 42 0 36 chr9 35925005 35925311 -81937316 + AluY SINE Alu 1 295 -16 2396 85 0 0 chr9 35926246 35926539 -81936088 + AluY SINE Alu 6 298 -13 2352 71 10 7 chr9 35927023 35927319 -81935308 + AluSq SINE Alu 1 297 -16 257 169 0 15 chr9 35927839 35927904 -81934723 + (TA)n Simple_repeat Simple_repeat 1 64 0 2164 107 0 4 chr9 35927949 35928229 -81934398 - AluSx SINE Alu -20 292 14 350 132 15 29 chr9 35928261 35928329 -81934298 + Alu SINE Alu 236 302 0 22 35 0 0 chr9 35928521 35928550 -81934077 + AT_rich Low_complexity Low_complexity 1 29 0 366 23 0 0 chr9 35928565 35928608 -81934019 + (TG)n Simple_repeat Simple_repeat 2 44 0 2147 85 20 14 chr9 35929134 35929428 -81933199 - AluSq SINE Alu -17 296 1 258 32 0 0 chr9 35929611 35929642 -81932985 + (A)n Simple_repeat Simple_repeat 1 31 0 1830 126 0 8 chr9 35930014 35930277 -81932350 - AluSx SINE Alu -18 294 34 317 167 86 126 chr9 35930296 35930333 -81932294 - L1ME4a LINE L1 0 6121 6084 1855 147 0 11 chr9 35930333 35930612 -81932015 + AluJb SINE Alu 20 295 -17 317 167 86 126 chr9 35930612 35930748 -81931879 - L1ME4a LINE L1 -37 6084 5955 2364 68 10 26 chr9 35930748 35931059 -81931568 - AluY SINE Alu -5 306 1 1783 166 0 71 chr9 35931061 35931230 -81931397 - AluJb SINE Alu -9 303 124 2117 134 0 3 chr9 35931230 35931522 -81931105 - AluSx SINE Alu -16 296 6 1783 166 0 71 chr9 35931522 35931536 -81931091 - AluJb SINE Alu -188 124 111 2403 77 3 0 chr9 35931536 35931834 -81930793 - AluY SINE Alu -12 299 1 1783 166 0 71 chr9 35931834 35931975 -81930652 - AluJb SINE Alu -201 111 1 229 330 113 10 chr9 35932004 35932101 -81930526 - L2 LINE L2 -484 2830 2724 1947 161 3 0 chr9 35932328 35932626 -81930001 + AluJo SINE Alu 1 299 -13 1862 180 0 6 chr9 35934355 35934666 -81927961 - AluJo SINE Alu -3 309 1 21 0 0 0 chr9 35934673 35934694 -81927933 + AT_rich Low_complexity Low_complexity 1 21 0 2554 58 0 0 chr9 35935281 35935575 -81927052 + AluY SINE Alu 1 294 -17 1282 112 6 0 chr9 35935685 35935854 -81926773 - AluSq SINE Alu -143 170 1 2258 72 13 16 chr9 35935856 35936160 -81926467 - AluY SINE Alu -8 303 1 2555 55 0 0 chr9 35936168 35936477 -81926150 - AluY SINE Alu -2 309 1 700 116 80 0 chr9 35936713 35936825 -81925802 - AluJo SINE Alu -177 135 15 2107 114 0 0 chr9 35936906 35937228 -81925399 - AluSx SINE Alu 0 324 3 940 95 0 14 chr9 35937337 35937485 -81925142 + (TTTC)n Simple_repeat Simple_repeat 2 147 0 1644 79 0 0 chr9 35937485 35937688 -81924939 - AluY SINE Alu -41 270 68 1156 67 0 0 chr9 35937688 35937823 -81924804 - AluY SINE Alu -176 135 1 2869 112 26 33 chr9 35937823 35938002 -81924625 + Tigger3(Golem) DNA MER2_type 2561 2740 -288 2073 102 3 88 chr9 35938002 35938344 -81924283 - AluSp SINE Alu 0 313 1 2869 112 26 33 chr9 35938344 35938620 -81924007 + Tigger3(Golem) DNA MER2_type 2740 3013 -15 261 298 81 56 chr9 35938864 35939025 -81923602 + L2 LINE L2 2588 2752 -562 211 350 87 0 chr9 35939367 35939470 -81923157 - L2 LINE L2 -11 3261 3150 4093 140 21 55 chr9 35939690 35939753 -81922874 - L1MB7 LINE L1 -5 6179 6115 1955 141 3 7 chr9 35939753 35940052 -81922575 - AluJb SINE Alu -14 298 1 4093 140 21 55 chr9 35940052 35940808 -81921819 - L1MB7 LINE L1 -69 6115 5388 1928 103 4 4 chr9 35941240 35941493 -81921134 - AluSx SINE Alu -23 289 37 399 341 50 0 chr9 35941844 35942023 -81920604 + MIR SINE MIR 75 262 0 577 244 152 35 chr9 35942854 35943084 -81919543 + MIR SINE MIR 6 262 0 1491 177 103 0 chr9 35944349 35944631 -81917996 - AluJb SINE Alu 0 312 2 1997 134 20 3 chr9 35944710 35945009 -81917618 - AluSx SINE Alu -8 304 1 2028 145 0 13 chr9 35945663 35945974 -81916653 - AluSx SINE Alu -5 307 1 2755 79 37 80 chr9 35945974 35946031 -81916596 - L1MA1 LINE L1 -180 6122 6064 2286 90 7 0 chr9 35946031 35946331 -81916296 - AluSg SINE Alu -8 302 1 2755 79 37 80 chr9 35946331 35946649 -81915978 - L1MA1 LINE L1 -238 6064 5765 2184 117 3 0 chr9 35946649 35946947 -81915680 - AluSq SINE Alu -14 299 1 2755 79 37 80 chr9 35946947 35947071 -81915556 - L1MA1 LINE L1 -537 5765 5637 24 0 0 0 chr9 35947108 35947132 -81915495 + AT_rich Low_complexity Low_complexity 1 24 0 1118 130 79 6 chr9 35947206 35947383 -81915244 - AluJo SINE Alu -122 190 1 275 300 154 33 chr9 35947397 35947670 -81914957 - HAL1 LINE L1 -1543 964 659 351 304 190 36 chr9 35947710 35948068 -81914559 - HAL1 LINE L1 -1953 554 142 705 139 0 0 chr9 35948075 35948176 -81914451 + FLAM_C SINE Alu 17 117 -26 1705 142 94 14 chr9 35948262 35948550 -81914077 - AluJb SINE Alu -1 311 1 1938 151 7 0 chr9 35949600 35949904 -81912723 - AluSx SINE Alu -3 309 4 391 290 59 32 chr9 35949949 35950201 -81912426 - L1ME LINE L1 -335 5786 5519 2315 93 7 0 chr9 35950227 35950518 -81912109 - AluSg SINE Alu -17 293 1 1881 184 0 3 chr9 35960371 35960675 -81901952 + AluJo SINE Alu 1 303 -9 764 146 183 0 chr9 35961025 35961162 -81901465 - MER20 DNA MER1_type 0 219 58 223 264 157 16 chr9 35961235 35961356 -81901271 + MIR3 SINE MIR 18 155 -53 284 318 0 11 chr9 35961667 35961755 -81900872 + (CA)n Simple_repeat Simple_repeat 2 88 0 717 274 103 27 chr9 35962008 35962258 -81900369 + L1MC4 LINE L1 5345 5574 -547 798 150 0 30 chr9 35962258 35962391 -81900236 + FLAM_A SINE Alu 1 129 -4 717 274 103 27 chr9 35962391 35962585 -81900042 + L1MC4 LINE L1 5574 5823 -298 243 283 53 26 chr9 35962694 35962807 -81899820 + HAL1b LINE L1 1204 1319 -29 2081 119 0 3 chr9 35962873 35963181 -81899446 + AluSx SINE Alu 1 307 0 344 208 19 28 chr9 35963897 35964003 -81898624 - L1MC4a LINE L1 -1897 5911 5807 1722 150 44 27 chr9 35964120 35964413 -81898214 - AluJb SINE Alu -14 298 1 995 138 120 71 chr9 35964543 35964709 -81897918 - MER46A DNA MER2_type -2495 236 55 1702 158 0 54 chr9 35964709 35964860 -81897767 + AluJb SINE Alu 1 128 -184 342 0 0 0 chr9 35964860 35964898 -81897729 + (TA)n Simple_repeat Simple_repeat 2 39 0 1702 158 0 54 chr9 35964898 35965062 -81897565 + AluJb SINE Alu 128 299 -13 995 138 120 71 chr9 35965062 35965120 -81897507 - MER46A DNA MER2_type -2676 55 1 311 197 33 0 chr9 35965846 35965907 -81896720 - MIR3 SINE MIR -9 199 137 718 110 0 47 chr9 35965912 35966039 -81896588 - FLAM_C SINE Alu 0 143 23 2114 110 0 26 chr9 35966324 35966633 -81895994 + AluSx SINE Alu 1 301 -11 296 234 97 106 chr9 35967074 35967343 -81895284 + L1MC4 LINE L1 5801 6071 -1971 1737 177 0 3 chr9 35967343 35967654 -81894973 - AluJo SINE Alu -2 310 1 296 234 97 106 chr9 35967654 35968085 -81894542 + L1MC4 LINE L1 6071 6505 -1537 1944 151 0 0 chr9 35968085 35968377 -81894250 - AluJb SINE Alu -20 292 1 296 234 97 106 chr9 35968377 35968583 -81894044 + L1MC4 LINE L1 6505 6711 -1331 2176 108 0 3 chr9 35968583 35968890 -81893737 + AluSg SINE Alu 3 308 -2 296 234 97 106 chr9 35968890 35969664 -81892963 + L1MC4 LINE L1 6711 7495 -547 1549 138 43 20 chr9 35969711 35970015 -81892612 - MER33 DNA MER1_type -22 302 1 432 236 0 50 chr9 35970019 35970180 -81892447 + L1MC5 LINE L1 7345 7497 -464 679 208 101 68 chr9 35970187 35970354 -81892273 + L1MC5 LINE L1 7547 7707 -254 1912 108 35 14 chr9 35970354 35970640 -81891987 - AluSq SINE Alu -21 292 1 679 208 101 68 chr9 35970640 35970685 -81891942 + L1MC5 LINE L1 7707 7749 -212 2249 101 0 0 chr9 35970685 35970992 -81891635 - AluSx SINE Alu -5 307 1 679 208 101 68 chr9 35970992 35971143 -81891484 + L1MC5 LINE L1 7749 7923 -38 2316 46 0 0 chr9 35971585 35971904 -81890723 - AluY SINE Alu 0 319 1 705 189 8 0 chr9 35971994 35972116 -81890511 + FLAM_A SINE Alu 1 123 -19 2230 82 10 0 chr9 35972127 35972418 -81890209 + AluSc SINE Alu 1 294 -15 2512 68 0 0 chr9 35972420 35972731 -81889896 + AluY SINE Alu 1 311 0 1504 206 14 0 chr9 35973498 35973784 -81888843 - AluJo SINE Alu -22 290 1 625 120 15 2 chr9 35974050 35974310 -81888317 + AluSx SINE Alu 1 312 0 1788 143 18 7 chr9 35974397 35974683 -81887944 - AluJo SINE Alu -19 293 5 2059 128 0 0 chr9 35974707 35975003 -81887624 - AluSx SINE Alu -16 296 1 1734 159 0 3 chr9 35975217 35975531 -81887096 + AluJo SINE Alu 1 313 0 2469 65 0 0 chr9 35975679 35975985 -81886642 + AluY SINE Alu 1 306 -5 1091 163 22 0 chr9 35977950 35978134 -81884493 + AluJo SINE Alu 108 295 -17 252 86 0 0 chr9 35978352 35978387 -81884240 + (A)n Simple_repeat Simple_repeat 1 35 0 1601 197 0 3 chr9 35979660 35979950 -81882677 - AluJo SINE Alu -23 289 1 745 109 130 115 chr9 35979950 35980142 -81882485 + AluJb SINE Alu 118 312 0 811 92 0 84 chr9 35980205 35980336 -81882291 - FLAM_C SINE Alu -7 136 17 483 302 187 34 chr9 35980343 35980701 -81881926 + HAL1 LINE L1 142 554 -1953 270 300 154 33 chr9 35980741 35981014 -81881613 + HAL1 LINE L1 659 964 -1543 1039 130 79 6 chr9 35981028 35981205 -81881422 + AluJo SINE Alu 1 190 -122 24 0 0 0 chr9 35981279 35981303 -81881324 + AT_rich Low_complexity Low_complexity 1 24 0 2867 82 29 74 chr9 35981340 35981464 -81881163 + L1MA1 LINE L1 5637 5765 -537 2062 117 3 0 chr9 35981464 35981762 -81880865 + AluSq SINE Alu 1 299 -14 2867 82 29 74 chr9 35981762 35982136 -81880491 + L1MA1 LINE L1 5765 6119 -183 1869 162 0 0 chr9 35982138 35982434 -81880193 + AluSx SINE Alu 1 296 -16 823 136 15 15 chr9 35982447 35982579 -81880048 + FLAM_C SINE Alu 1 132 -1 2067 110 0 3 chr9 35982585 35982875 -81879752 + AluSc SINE Alu 1 289 -20 295 308 60 34 chr9 35982980 35983097 -81879530 - MIR SINE MIR -137 125 6 2146 109 0 6 chr9 35983147 35983458 -81879169 + AluSg SINE Alu 1 309 -1 250 338 74 7 chr9 35983750 35983898 -81878729 - L1MEd LINE L1 -5346 773 616 22 0 0 0 chr9 35984102 35984124 -81878503 + AT_rich Low_complexity Low_complexity 1 22 0 1779 166 10 13 chr9 35984197 35984510 -81878117 - AluJb SINE Alu 0 312 1 934 294 195 7 chr9 35984510 35985111 -81877516 + L2 LINE L2 1821 2534 -780 804 226 99 12 chr9 35985121 35985373 -81877254 + L1MC4a LINE L1 5500 5773 -348 30 27 0 0 chr9 35985383 35985420 -81877207 + AT_rich Low_complexity Low_complexity 1 37 0 305 284 97 8 chr9 35985425 35985559 -81877068 + L1ME4a LINE L1 5974 6119 -2 593 255 83 55 chr9 35986299 35986625 -81876002 + L2 LINE L2 2925 3259 -54 374 298 50 8 chr9 35987203 35987324 -81875303 - MIR3 SINE MIR -23 185 60 486 257 71 14 chr9 35988921 35989061 -81873566 - MIR3 SINE MIR -31 177 30 185 328 31 16 chr9 35992541 35992605 -81870022 - L2 LINE L2 -3 3310 3246 391 308 46 32 chr9 35993385 35993618 -81869009 + L1MC4a LINE L1 5768 6012 -150 2100 109 0 0 chr9 35993670 35993984 -81868643 + AluSx SINE Alu 1 314 0 831 138 41 0 chr9 35994962 35995085 -81867542 + FLAM_C SINE Alu 1 128 -5 307 181 0 42 chr9 35995094 35995166 -81867461 + L1MB8 LINE L1 5968 6036 -142 530 283 80 22 chr9 35995201 35995427 -81867200 - Charlie8 DNA MER1_type -2135 282 44 2050 133 3 0 chr9 35995556 35995864 -81866763 + AluJo SINE Alu 1 309 -3 276 279 29 31 chr9 35996041 35996192 -81866435 - MIR3 SINE MIR -66 142 4 2392 89 0 0 chr9 35996773 35997086 -81865541 - AluSq SINE Alu 0 313 1 362 132 0 0 chr9 35997093 35997146 -81865481 + L1MB8 LINE L1 6119 6171 -7 617 165 0 9 chr9 35997152 35997261 -81865366 + L1MB7 LINE L1 5812 5919 -265 2230 83 0 10 chr9 35997262 35997562 -81865065 - AluSx SINE Alu -15 297 1 1514 120 127 47 chr9 35997883 35998158 -81864469 - AluSx SINE Alu -15 297 1 746 272 89 10 chr9 35998167 35998480 -81864147 - L1ME4a LINE L1 -273 5848 5511 1829 147 0 18 chr9 35999597 35999915 -81862712 + AluSx SINE Alu 1 313 0 280 109 0 0 chr9 35999923 35999969 -81862658 + L1MB3 LINE L1 6131 6176 -7 1713 153 0 18 chr9 36001502 36001783 -81860844 + AluJb SINE Alu 1 276 -36 312 27 0 0 chr9 36001783 36001820 -81860807 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr9 36001819 36001855 -81860772 + (GA)n Simple_repeat Simple_repeat 1 36 0 265 266 76 0 chr9 36002673 36002752 -81859875 - MER5A DNA MER1_type -95 94 10 380 326 141 5 chr9 36003016 36003200 -81859427 - MIR SINE MIR -5 257 49 371 262 85 7 chr9 36003243 36003384 -81859243 + MARNA DNA Mariner 25 176 -410 544 340 65 63 chr9 36003621 36003684 -81858943 - L2 LINE L2 -17 3255 3194 1581 148 57 11 chr9 36003684 36003948 -81858679 + AluJb SINE Alu 1 276 -36 544 340 65 63 chr9 36003948 36004758 -81857869 - L2 LINE L2 -78 3194 2372 1703 155 17 3 chr9 36005615 36005905 -81856722 - AluJb SINE Alu -18 294 1 2114 84 4 0 chr9 36006006 36006317 -81856310 + AluSq SINE Alu 8 319 0 197 250 83 0 chr9 36007817 36007889 -81854738 + L2 LINE L2 2825 2902 -411 1256 122 19 42 chr9 36007980 36008193 -81854434 - AluJb SINE Alu -20 292 85 192 261 65 43 chr9 36009260 36009352 -81853275 - MIR SINE MIR -95 113 20 1304 184 0 125 chr9 36011051 36011195 -81851432 + AluSx SINE Alu 5 85 -217 2133 73 0 0 chr9 36011195 36011467 -81851160 + AluY SINE Alu 40 311 0 1304 184 0 125 chr9 36011467 36011658 -81850969 + AluSx SINE Alu 85 298 -4 2095 80 25 0 chr9 36011869 36012145 -81850482 + AluSc SINE Alu 16 298 -11 1576 144 115 0 chr9 36012569 36012839 -81849788 - AluJb SINE Alu -11 301 1 182 191 0 16 chr9 36013111 36013174 -81849453 + (CA)n Simple_repeat Simple_repeat 1 62 0 2634 236 101 23 chr9 36013206 36013680 -81848947 - HAL1 LINE L1 -1618 889 453 2057 114 0 23 chr9 36013680 36013986 -81848641 - AluSq SINE Alu -14 299 1 2634 236 101 23 chr9 36013986 36014334 -81848293 - HAL1 LINE L1 -2054 453 3 1041 150 12 0 chr9 36014464 36014633 -81847994 - AluJb SINE Alu -8 304 136 331 167 0 0 chr9 36014734 36014788 -81847839 - Tigger2a DNA MER2_type -40 394 341 2312 107 17 28 chr9 36014818 36015173 -81847454 - Tigger2a DNA MER2_type -83 351 1 2282 237 34 7 chr9 36015174 36015850 -81846777 - L1M4 LINE L1 -2424 3722 3029 254 165 35 12 chr9 36015876 36015961 -81846666 + CT-rich Low_complexity Low_complexity 3 89 0 510 278 9 0 chr9 36015966 36016074 -81846553 - FLAM_A SINE Alu -33 109 1 3022 171 29 14 chr9 36016120 36016764 -81845863 - L1MA7 LINE L1 -180 6111 5478 2409 105 3 0 chr9 36016764 36017070 -81845557 - AluSx SINE Alu -5 307 1 3022 171 29 14 chr9 36017070 36017474 -81845153 - L1MA7 LINE L1 -813 5478 2527 1990 125 14 11 chr9 36018143 36018457 -81844170 + AluSc SINE Alu 1 315 0 752 148 0 0 chr9 36018460 36018568 -81844059 + AluJo/FRAM SINE Alu 166 273 -39 203 100 0 50 chr9 36018576 36018616 -81844011 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2027 139 10 7 chr9 36019526 36019828 -81842799 + AluSx SINE Alu 2 304 -8 850 169 0 0 chr9 36019881 36020011 -81842616 - FLAM_C SINE Alu -12 131 2 273 29 0 0 chr9 36021666 36021700 -81840927 + (TG)n Simple_repeat Simple_repeat 2 35 0 260 313 116 14 chr9 36021783 36021930 -81840697 - L2 LINE L2 -588 2726 2565 197 303 147 28 chr9 36022626 36022735 -81839892 + L3 LINE CR1 1317 1438 -139 331 289 10 10 chr9 36022763 36022860 -81839767 + MIR SINE MIR 41 137 -71 999 190 50 5 chr9 36023083 36023283 -81839344 + MER3 DNA MER1_type 1 209 0 180 275 159 53 chr9 36023330 36023401 -81839226 - MIR SINE MIR -1 261 199 1249 44 0 13 chr9 36023401 36023559 -81839068 - L1PA5 LINE L1 0 6154 5999 180 275 159 53 chr9 36023559 36023676 -81838951 - MIR SINE MIR -63 199 53 847 228 76 20 chr9 36024088 36024285 -81838342 - MIR SINE MIR -1 261 54 2254 97 68 31 chr9 36024362 36024713 -81837914 - THE1B LTR MaLR 0 364 1 11893 87 15 5 chr9 36024713 36026277 -81836350 - THE1B-int LTR MaLR 0 1580 1 2104 121 59 36 chr9 36026277 36026633 -81835994 - THE1B LTR MaLR 0 364 1 1668 116 100 4 chr9 36026823 36027073 -81835554 + AluSg SINE Alu 6 279 -31 180 0 0 0 chr9 36027421 36027441 -81835186 + (TC)n Simple_repeat Simple_repeat 1 20 0 2196 127 0 0 chr9 36030878 36031170 -81831457 - AluSx SINE Alu -20 292 1 428 366 52 17 chr9 36031546 36031833 -81830794 + L2 LINE L2 2555 2851 -463 2139 117 3 33 chr9 36032028 36032335 -81830292 + AluJb SINE Alu 1 298 -14 284 266 64 18 chr9 36033331 36033440 -81829187 - MIR SINE MIR -119 143 30 2318 101 23 0 chr9 36035185 36035491 -81827136 - AluSq SINE Alu 0 313 1 1865 145 0 10 chr9 36035491 36035787 -81826840 - AluJo SINE Alu -19 293 1 2041 142 0 7 chr9 36039720 36040015 -81822612 + AluSx SINE Alu 1 293 -19 2005 144 3 3 chr9 36040810 36041109 -81821518 + AluSx SINE Alu 1 299 -13 969 276 4 8 chr9 36041179 36041418 -81821209 + MIR SINE MIR 1 238 -24 333 301 87 23 chr9 36041433 36041606 -81821021 + L2 LINE L2 2631 2814 -500 187 325 80 69 chr9 36041613 36041976 -81820651 - L2 LINE L2 -881 2433 2067 225 255 204 0 chr9 36042221 36042319 -81820308 - L2 LINE L2 -5 3267 3150 988 343 142 27 chr9 36042920 36044455 -81818172 - L2 LINE L2 -240 3032 1324 691 0 0 0 chr9 36045549 36045662 -81816965 + L1PA8 LINE L1 6071 6183 0 1185 200 4 13 chr9 36046049 36046279 -81816348 - AluJo SINE Alu 0 312 85 1157 166 10 5 chr9 36047088 36047281 -81815346 + AluJo SINE Alu 85 278 -34 570 41 0 0 chr9 36047296 36047369 -81815258 + (GAAA)n Simple_repeat Simple_repeat 1 73 0 2189 123 7 0 chr9 36047528 36047836 -81814791 - AluSg SINE Alu 0 310 1 2499 91 3 0 chr9 36048136 36048445 -81814182 - AluSq SINE Alu -3 310 1 264 243 65 19 chr9 36048513 36048620 -81814007 - L1ME4a LINE L1 -13 6108 5997 537 198 10 0 chr9 36048620 36048721 -81813906 - FLAM_A SINE Alu -6 136 35 1953 147 3 17 chr9 36048749 36049048 -81813579 - AluJb SINE Alu -17 295 1 375 264 88 41 chr9 36049121 36049267 -81813360 - L1MC4 LINE L1 -1 8041 7903 1450 171 50 67 chr9 36049267 36049565 -81813062 - AluJb SINE Alu -6 296 4 375 264 88 41 chr9 36049565 36049736 -81812891 - L1MC4 LINE L1 -139 7903 7709 183 80 0 0 chr9 36050160 36050185 -81812442 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 2286 128 0 0 chr9 36050310 36050615 -81812012 - AluSg1 SINE Alu -4 305 1 317 283 64 0 chr9 36050650 36050803 -81811824 - L1ME4a LINE L1 -298 5823 5676 633 243 76 11 chr9 36050917 36051102 -81811525 - MIR3 SINE MIR -9 199 3 2259 108 0 7 chr9 36051219 36051552 -81811075 - AluSx SINE Alu 0 312 1 342 91 15 45 chr9 36051932 36051998 -81810629 + Alu SINE Alu 1 64 -236 2333 49 3 11 chr9 36052823 36053132 -81809495 + AluY SINE Alu 1 307 0 485 265 62 49 chr9 36053218 36053380 -81809247 + MIR SINE MIR 91 254 -8 2407 75 3 0 chr9 36053381 36053673 -81808954 + AluY SINE Alu 1 293 -18 828 154 0 44 chr9 36053710 36053846 -81808781 + FLAM_C SINE Alu 1 130 -3 881 256 44 24 chr9 36053857 36054240 -81808387 + L1MEd LINE L1 843 1233 -4886 455 303 90 50 chr9 36054350 36054627 -81808000 + L1MEd LINE L1 1385 1730 -4459 1997 256 89 2 chr9 36054691 36055296 -81807331 + MLT2F LTR ERVL 6 663 0 306 0 0 0 chr9 36055358 36055392 -81807235 + (CA)n Simple_repeat Simple_repeat 2 35 0 1722 159 39 4 chr9 36055492 36055772 -81806855 + AluJo SINE Alu 22 310 0 475 283 101 14 chr9 36055972 36056340 -81806287 + L1MEd LINE L1 2618 3017 -3112 2410 92 0 0 chr9 36057456 36057748 -81804879 - AluSg SINE Alu -13 297 6 271 233 22 11 chr9 36058055 36058145 -81804482 - L1MC5 LINE L1 -58 7903 7813 213 191 43 0 chr9 36058147 36058194 -81804433 - MIR SINE MIR -73 135 87 232 186 29 14 chr9 36060579 36060649 -81801978 - L1MC5 LINE L1 -58 7903 7833 314 194 32 0 chr9 36060651 36060713 -81801914 - MIR SINE MIR -58 150 87 927 199 131 5 chr9 36061418 36061624 -81801003 + MIR SINE MIR 12 243 -19 721 167 14 58 chr9 36061921 36062059 -81800568 + FLAM_A SINE Alu 1 132 -1 2181 79 43 0 chr9 36062060 36062340 -81800287 + AluY SINE Alu 1 292 -19 254 241 299 22 chr9 36062660 36062797 -81799830 - MIR SINE MIR 0 262 88 28 29 0 0 chr9 36063037 36063072 -81799555 + AT_rich Low_complexity Low_complexity 1 35 0 474 339 66 50 chr9 36063210 36063573 -81799054 + L2 LINE L2 2420 2788 -526 1674 177 6 61 chr9 36064713 36065041 -81797586 + AluJo SINE Alu 1 310 -2 375 306 68 50 chr9 36065155 36065377 -81797250 + MIR SINE MIR 20 245 -17 1729 280 33 61 chr9 36066160 36066834 -81795793 + MLT2F LTR ERVL 1 655 -8 243 158 123 0 chr9 36066878 36066935 -81795692 - L2 LINE L2 -215 3057 2994 1882 184 3 10 chr9 36067904 36068214 -81794413 - AluJb SINE Alu -4 308 1 752 271 22 47 chr9 36068221 36068367 -81794260 - L1ME LINE L1 -297 5824 5676 2494 86 0 0 chr9 36068367 36068670 -81793957 - AluSp SINE Alu -10 303 1 752 271 22 47 chr9 36068670 36068844 -81793783 - L1ME LINE L1 -445 5676 5512 603 182 0 101 chr9 36069163 36069217 -81793410 + FLAM_A SINE Alu 10 68 -243 1967 70 0 25 chr9 36069217 36069459 -81793168 - AluSc SINE Alu -20 289 54 603 182 0 101 chr9 36069459 36069552 -81793075 + FLAM_A SINE Alu 68 142 -169 1890 154 0 48 chr9 36069581 36069893 -81792734 + AluJb SINE Alu 1 297 -15 201 224 92 102 chr9 36071039 36071101 -81791526 + MIR3 SINE MIR 107 169 -39 1976 145 21 0 chr9 36071101 36071390 -81791237 + AluJb SINE Alu 1 295 -17 201 224 92 102 chr9 36071390 36071425 -81791202 + MIR3 SINE MIR 169 203 -5 2481 85 0 3 chr9 36071471 36071776 -81790851 - AluSx SINE Alu -8 304 1 903 132 8 0 chr9 36072396 36072517 -81790110 - FLAM_C SINE Alu -21 122 1 2309 112 0 0 chr9 36073052 36073348 -81789279 - AluSx SINE Alu -14 298 3 1778 172 59 0 chr9 36074276 36074396 -81788231 + AluJo SINE Alu 1 113 -199 225 0 0 0 chr9 36074396 36074421 -81788206 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1778 172 59 0 chr9 36074421 36074590 -81788037 + AluJo SINE Alu 113 307 -5 252 224 106 59 chr9 36075519 36075604 -81787023 + L2 LINE L2 3168 3256 -16 2096 125 17 0 chr9 36075615 36075903 -81786724 + AluSx SINE Alu 1 293 -19 1954 145 17 0 chr9 36075928 36076218 -81786409 + AluSx SINE Alu 1 295 -17 2126 134 0 25 chr9 36076220 36076540 -81786087 + AluSx SINE Alu 1 312 0 2112 112 3 11 chr9 36076957 36077243 -81785384 - AluSp SINE Alu -29 284 1 229 344 44 11 chr9 36077861 36077951 -81784676 - MIR3 SINE MIR -11 197 105 630 39 0 0 chr9 36078017 36078094 -81784533 + (TA)n Simple_repeat Simple_repeat 2 78 0 2577 60 0 28 chr9 36078179 36078496 -81784131 - AluY SINE Alu -3 308 1 2377 84 0 26 chr9 36079000 36079308 -81783319 - AluSx SINE Alu -12 300 1 949 167 67 58 chr9 36079309 36079549 -81783078 + L1MB7 LINE L1 5912 6153 -31 1869 156 0 20 chr9 36079549 36079844 -81782783 - AluJb SINE Alu -23 289 1 207 100 0 0 chr9 36079861 36079891 -81782736 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 2273 92 0 3 chr9 36129955 36130258 -81732369 - AluY SINE Alu -9 302 1 1704 130 72 0 chr9 36130262 36130539 -81732088 - AluJo SINE Alu -15 297 1 241 342 26 0 chr9 36130600 36130717 -81731910 - L1MC4 LINE L1 -593 7449 7330 454 287 117 18 chr9 36131068 36131291 -81731336 + MIR SINE MIR 13 257 -5 193 188 350 12 chr9 36132859 36132939 -81729688 - MIR SINE MIR -81 127 21 890 118 0 0 chr9 36134497 36134616 -81728011 + AluSq/x SINE Alu 1 119 -193 239 372 83 16 chr9 36135047 36135168 -81727459 - MIR3 SINE MIR -32 176 48 298 206 11 54 chr9 36135418 36135510 -81727117 + MER97c DNA MER1_type? 3 90 -1000 245 149 164 30 chr9 36135474 36135541 -81727086 - U2 snRNA snRNA -112 76 1 * 366 157 37 102 chr9 36135540 36135585 -81727042 + MER97a DNA MER1_type? 72 118 -776 2040 41 107 7 chr9 36135585 36135856 -81726771 + AluY SINE Alu 1 298 -13 366 157 37 102 chr9 36135856 36135918 -81726709 + MER97a DNA MER1_type? 118 172 -722 1760 125 114 0 chr9 36136117 36136397 -81726230 + AluSq SINE Alu 2 313 0 490 313 66 59 chr9 36136422 36137092 -81725535 - L2 LINE L2 -1 3271 2538 213 60 20 40 chr9 36137292 36137342 -81725285 + (TTTTTG)n Simple_repeat Simple_repeat 6 54 0 1904 135 0 10 chr9 36137522 36137811 -81724816 + AluSx SINE Alu 1 286 -26 697 180 16 8 chr9 36137843 36137971 -81724656 + AluJo SINE Alu 13 141 -171 1997 125 14 0 chr9 36138072 36138360 -81724267 - AluSq SINE Alu -21 292 1 1924 128 0 0 chr9 36138365 36138631 -81723996 - AluSx SINE Alu -46 266 1 392 353 65 61 chr9 36138695 36139157 -81723470 - L1ME4a LINE L1 -64 6057 5594 6925 122 25 67 chr9 36139216 36140581 -81722046 + SVA Other Other 79 1386 0 183 100 0 0 chr9 36140784 36140814 -81721813 + (A)n Simple_repeat Simple_repeat 1 30 0 2442 64 0 6 chr9 36140910 36141223 -81721404 - AluY SINE Alu 0 311 1 258 246 87 0 chr9 36141494 36141563 -81721064 + MIR SINE MIR 186 260 -2 * 377 324 98 17 chr9 36141555 36141728 -81720899 - L2 LINE L2 0 3313 3127 2124 107 7 0 chr9 36141790 36142088 -81720539 + AluSx SINE Alu 1 300 -12 2262 76 0 7 chr9 36142096 36142384 -81720243 + AluSx SINE Alu 5 290 -22 254 191 246 9 chr9 36143723 36143833 -81718794 - L2 LINE L2 0 3313 3178 1539 111 5 9 chr9 36143894 36144111 -81718516 - AluJo SINE Alu -13 299 84 2298 67 3 0 chr9 36144137 36144456 -81718171 + AluSp SINE Alu 1 320 0 2010 128 0 0 chr9 36144751 36145072 -81717555 + AluSx SINE Alu 3 323 0 2234 98 0 3 chr9 36145151 36145448 -81717179 + AluSc SINE Alu 1 296 -13 1639 152 73 13 chr9 36145464 36145780 -81716847 - L1MB7 LINE L1 -17 6167 5833 2018 150 0 13 chr9 36145786 36146100 -81716527 - AluJb SINE Alu -2 310 1 2046 111 3 7 chr9 36146335 36146654 -81715973 - AluSx SINE Alu 0 318 1 220 27 54 0 chr9 36146656 36146693 -81715934 + (TTTG)n Simple_repeat Simple_repeat 4 42 0 249 348 0 44 chr9 36146967 36147102 -81715525 - MIR3 SINE MIR -9 199 71 378 312 89 7 chr9 36147246 36147467 -81715160 + L2 LINE L2 2790 3027 -245 187 234 0 94 chr9 36147537 36147601 -81715026 + L2 LINE L2 3163 3220 -93 534 306 104 20 chr9 36147680 36148027 -81714600 + MLT1K LTR MaLR 211 586 -2 2198 108 0 0 chr9 36148128 36148425 -81714202 + AluSq SINE Alu 1 297 -16 1419 191 19 44 chr9 36148431 36148751 -81713876 + AluJo SINE Alu 1 312 0 2099 113 0 0 chr9 36148765 36149070 -81713557 - AluSx SINE Alu 0 305 1 1805 166 16 3 chr9 36149105 36149412 -81713215 + AluJo SINE Alu 1 311 -1 2109 109 0 14 chr9 36149416 36149710 -81712917 + AluSx SINE Alu 1 290 -22 209 364 73 33 chr9 36149970 36150121 -81712506 + MIR SINE MIR 16 141 -67 277 288 9 0 chr9 36150503 36150614 -81712013 + (TG)n Simple_repeat Simple_repeat 2 113 0 183 250 39 0 chr9 36151720 36151772 -81710855 + L3b LINE CR1 1352 1405 -178 519 269 47 27 chr9 36152224 36152373 -81710254 - MIR SINE MIR -4 258 107 452 279 93 5 chr9 36152376 36152580 -81710047 - LTR33 LTR ERVL -3 518 297 502 253 62 43 chr9 36152604 36152766 -81709861 - LTR33 LTR ERVL -331 190 26 206 254 60 0 chr9 36152883 36152950 -81709677 + MIR SINE MIR 35 105 -103 208 214 0 0 chr9 36153419 36153461 -81709166 + (CACCC)n Simple_repeat Simple_repeat 4 45 0 2166 115 0 0 chr9 36153741 36154058 -81708569 + AluSq SINE Alu 1 313 0 2196 114 0 0 chr9 36154429 36154727 -81707900 - AluSg SINE Alu -12 298 1 2472 53 0 3 chr9 36154727 36155025 -81707602 - AluY SINE Alu -13 298 1 350 271 181 19 chr9 36155555 36155710 -81706917 - MIR SINE MIR -11 251 72 190 289 50 6 chr9 36156063 36156135 -81706492 + MIR SINE MIR 74 140 -68 228 326 91 0 chr9 36156773 36156905 -81705722 - L2 LINE L2 -608 2706 2563 311 253 121 20 chr9 36156934 36157033 -81705594 - L3 LINE CR1 -125 1452 1344 29 0 0 0 chr9 36157320 36157349 -81705278 + AT_rich Low_complexity Low_complexity 1 29 0 282 164 0 0 chr9 36157861 36157916 -81704711 + (CA)n Simple_repeat Simple_repeat 1 55 0 2290 89 3 13 chr9 36160460 36160773 -81701854 + AluSx SINE Alu 1 310 -2 838 129 23 23 chr9 36161161 36161293 -81701334 + FLAM_C SINE Alu 2 133 0 2121 112 3 0 chr9 36164670 36164965 -81697662 - AluSx SINE Alu -15 297 2 1334 182 30 34 chr9 36165041 36165305 -81697322 - AluJo SINE Alu -16 296 34 2385 79 0 3 chr9 36165507 36165811 -81696816 + AluSq SINE Alu 1 303 -10 1296 185 0 0 chr9 36166081 36166297 -81696330 - AluJo SINE Alu -75 237 22 709 124 0 0 chr9 36166342 36166439 -81696188 + AluSg/x SINE Alu 146 242 -68 560 150 0 0 chr9 36166435 36166515 -81696112 - AluSp SINE Alu -100 213 134 * 1094 382 18 64 chr9 36166515 36166842 -81695785 - AluSx SINE Alu 0 312 1 186 43 0 0 chr9 36166858 36166881 -81695746 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 246 81 0 0 chr9 36166972 36167009 -81695618 + (CA)n Simple_repeat Simple_repeat 1 37 0 2435 82 0 19 chr9 36167632 36167947 -81694680 + AluY SINE Alu 1 309 -2 2188 114 0 13 chr9 36167961 36168097 -81694530 + AluSx SINE Alu 1 137 -175 2266 107 0 20 chr9 36168097 36168395 -81694232 + AluSp SINE Alu 1 292 -21 2188 114 0 13 chr9 36168395 36168565 -81694062 + AluSx SINE Alu 137 303 -9 428 248 74 0 chr9 36169951 36170072 -81692555 - MIR SINE MIR -83 179 50 1516 88 0 0 chr9 36170860 36171041 -81691586 + AluSg SINE Alu 1 181 -129 2209 103 3 38 chr9 36171412 36171732 -81690895 + AluSc SINE Alu 1 309 0 2340 104 3 19 chr9 36171744 36172062 -81690565 + AluSp SINE Alu 1 313 0 2150 95 13 63 chr9 36172536 36172853 -81689774 - AluSq SINE Alu -12 301 1 338 259 0 76 chr9 36172927 36173058 -81689569 - L2 LINE L2 -570 2744 2624 2461 87 0 0 chr9 36173609 36173908 -81688719 - AluSg SINE Alu -11 299 1 1980 105 59 36 chr9 36174242 36174546 -81688081 + AluSq SINE Alu 1 311 -2 258 229 60 24 chr9 36174734 36174817 -81687810 + MIR SINE MIR 36 121 -87 846 81 8 32 chr9 36175370 36175493 -81687134 + FLAM_C SINE Alu 23 142 -1 2343 103 10 3 chr9 36176105 36176415 -81686212 + AluSq SINE Alu 1 312 -1 270 333 75 0 chr9 36176555 36176648 -81685979 - MIR SINE MIR -107 155 56 273 309 13 81 chr9 36177342 36177491 -81685136 + MIR SINE MIR 113 251 -11 190 253 24 60 chr9 36177630 36177713 -81684914 - L2 LINE L2 -38 3275 3196 623 150 67 25 chr9 36177786 36177906 -81684721 - FLAM_C SINE Alu -7 126 2 521 275 67 31 chr9 36181769 36181962 -81680665 - MIR SINE MIR -57 205 6 709 255 114 134 chr9 36186539 36186728 -81675899 + L2 LINE L2 2285 2476 -837 2328 62 24 0 chr9 36186728 36187016 -81675611 + AluY SINE Alu 1 295 -16 709 255 114 134 chr9 36187016 36187307 -81675320 + L2 LINE L2 2476 2771 -542 2053 114 45 10 chr9 36187307 36187597 -81675030 + AluSq SINE Alu 1 300 -13 709 255 114 134 chr9 36187597 36188166 -81674461 + L2 LINE L2 2771 3295 -18 2177 126 13 0 chr9 36189007 36189309 -81673318 + AluSx SINE Alu 1 306 -6 323 365 32 6 chr9 36190532 36190688 -81671939 + L2 LINE L2 2467 2626 -688 315 0 0 0 chr9 36190744 36190779 -81671848 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1883 142 0 0 chr9 36190786 36191061 -81671566 - AluSx SINE Alu -37 275 1 787 247 83 39 chr9 36191061 36191414 -81671213 - L1MC4 LINE L1 -4 8038 7572 185 0 40 0 chr9 36191434 36191459 -81671168 + (TA)n Simple_repeat Simple_repeat 2 27 0 1973 143 7 13 chr9 36191459 36191766 -81670861 - AluSx SINE Alu -7 305 1 711 231 52 9 chr9 36191769 36191981 -81670646 - L1ME3A LINE L1 -5 6165 5945 2442 58 0 10 chr9 36191991 36192312 -81670315 - AluY SINE Alu 0 311 1 324 339 8 0 chr9 36192350 36192480 -81670147 + L2 LINE L2 2654 2784 -530 186 71 0 0 chr9 36192530 36192558 -81670069 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2138 112 0 18 chr9 36192560 36192845 -81669782 - AluSx SINE Alu -32 280 1 1074 189 219 0 chr9 36192874 36193102 -81669525 - AluJb SINE Alu -34 278 1 266 369 67 17 chr9 36193111 36193290 -81669337 + L2 LINE L2 2841 3028 -244 1339 142 49 0 chr9 36193290 36193494 -81669133 - AluJb SINE Alu -98 214 1 2047 148 13 0 chr9 36193545 36193849 -81668778 - AluSx SINE Alu -2 310 3 198 71 0 0 chr9 36193872 36193900 -81668727 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 2103 124 6 13 chr9 36193909 36194223 -81668404 - AluSx SINE Alu 0 312 1 1010 185 219 0 chr9 36194346 36194584 -81668043 - AluJo SINE Alu -12 290 1 257 250 0 0 chr9 36194642 36194694 -81667933 + L2 LINE L2 3218 3269 -3 1469 116 41 141 chr9 36195041 36195144 -81667483 + AluJb SINE Alu 24 136 -176 2004 119 25 0 chr9 36195144 36195422 -81667205 + AluSg SINE Alu 1 285 -25 1469 116 41 141 chr9 36195422 36195441 -81667186 + AluJb SINE Alu 136 155 -157 2314 112 0 10 chr9 36195441 36195753 -81666874 + AluSx SINE Alu 1 309 -3 1469 116 41 141 chr9 36195753 36195766 -81666861 + AluJb SINE Alu 155 168 -144 2249 96 7 3 chr9 36195766 36196059 -81666568 + AluSg1 SINE Alu 1 294 -15 1469 116 41 141 chr9 36196059 36196241 -81666386 + AluJb SINE Alu 168 311 -1 546 241 36 24 chr9 36196308 36196474 -81666153 + L2 LINE L2 3131 3298 -15 234 0 0 0 chr9 36196474 36196500 -81666127 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 839 114 31 192 chr9 36196615 36196744 -81665883 + LTR23 LTR ERV1 1 149 -288 1637 174 0 52 chr9 36196744 36196942 -81665685 - AluJb SINE Alu -2 310 134 2201 93 7 35 chr9 36196942 36197252 -81665375 + AluSq SINE Alu 1 301 -12 1637 174 0 52 chr9 36197252 36197380 -81665247 - AluJb SINE Alu -178 134 1 839 114 31 192 chr9 36197380 36197398 -81665229 + LTR23 LTR ERV1 149 168 -269 1778 133 64 42 chr9 36197398 36197728 -81664899 + MER1B DNA MER1_type 1 337 0 2503 47 10 7 chr9 36197730 36198026 -81664601 - AluY SINE Alu -13 298 2 839 114 31 192 chr9 36198026 36198051 -81664576 + LTR23 LTR ERV1 169 127 -310 1355 188 21 76 chr9 36198051 36198183 -81664444 + AluJo SINE Alu 1 139 -173 2055 94 94 0 chr9 36198183 36198469 -81664158 + AluSp SINE Alu 1 313 0 1355 188 21 76 chr9 36198469 36198666 -81663961 + AluJo SINE Alu 139 312 0 839 114 31 192 chr9 36198666 36198743 -81663884 + LTR23 LTR ERV1 126 214 -223 1283 145 8 68 chr9 36198743 36198977 -81663650 + AluJb SINE Alu 1 220 -92 1018 118 0 0 chr9 36199105 36199240 -81663387 + AluY SINE Alu 115 249 -62 1483 115 28 5 chr9 36199240 36199272 -81663355 + AluSg/x SINE Alu 83 113 -197 243 0 0 0 chr9 36199272 36199299 -81663328 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1483 115 28 5 chr9 36199299 36199483 -81663144 + AluSg/x SINE Alu 113 304 -6 438 97 43 11 chr9 36199488 36199581 -81663046 + LTR23 LTR ERV1 210 305 -132 645 196 49 98 chr9 36199583 36199787 -81662840 + AluJo SINE Alu 2 195 -117 2238 94 0 17 chr9 36199836 36200158 -81662469 - AluSx SINE Alu 0 319 3 2092 116 0 33 chr9 36200164 36200467 -81662160 - AluSc SINE Alu -16 293 1 1292 113 15 49 chr9 36200608 36200778 -81661849 - AluY SINE Alu -14 297 134 2619 61 0 6 chr9 36200778 36201089 -81661538 - AluY SINE Alu -2 309 1 1292 113 15 49 chr9 36201089 36201122 -81661505 - AluY SINE Alu -177 134 101 4578 175 14 3 chr9 36201122 36202012 -81660615 + L1 LINE L1 4433 5331 -815 1356 167 5 14 chr9 36202012 36202234 -81660393 + AluJo SINE Alu 1 220 -92 303 28 0 0 chr9 36202303 36202339 -81660288 + (TA)n Simple_repeat Simple_repeat 1 36 0 981 150 70 37 chr9 36202352 36202539 -81660088 + AluJb SINE Alu 14 206 -106 2078 121 0 0 chr9 36202853 36203117 -81659510 + AluSx SINE Alu 1 264 -48 216 0 0 0 chr9 36203296 36203320 -81659307 + (CA)n Simple_repeat Simple_repeat 2 25 0 1810 173 0 26 chr9 36204351 36204657 -81657970 - AluJo SINE Alu -14 298 1 186 43 0 0 chr9 36204661 36204684 -81657943 + (TG)n Simple_repeat Simple_repeat 1 23 0 2160 119 10 0 chr9 36204752 36205045 -81657582 - AluSx SINE Alu -16 296 1 333 353 87 7 chr9 36205050 36205200 -81657427 - L1MC4a LINE L1 -1923 5885 5724 233 237 172 0 chr9 36205709 36205802 -81656825 - MIR SINE MIR -118 144 36 619 88 68 101 chr9 36206424 36206572 -81656055 - AluSg SINE Alu -166 144 2 1396 164 44 4 chr9 36206575 36206849 -81655778 - L1MB2 LINE L1 -42 6129 5845 1198 136 0 23 chr9 36206861 36207038 -81655589 - AluSq SINE Alu -10 303 131 962 167 12 11 chr9 36207038 36207205 -81655422 - L1MB2 LINE L1 -348 5823 5667 1377 96 64 0 chr9 36207205 36207425 -81655202 - L1PA14 LINE L1 0 6161 5928 962 167 12 11 chr9 36207425 36207449 -81655178 - L1MB2 LINE L1 -504 5667 5645 788 156 78 90 chr9 36207449 36207557 -81655070 + ORSL DNA AcHobo 23 131 -144 2028 154 3 0 chr9 36207557 36207855 -81654772 - AluSq SINE Alu -14 299 1 788 156 78 90 chr9 36207855 36208002 -81654625 + ORSL DNA AcHobo 131 275 0 2089 173 71 19 chr9 36208336 36208798 -81653829 + MER66B LTR ERV1 1 486 0 1764 99 0 0 chr9 36208826 36209049 -81653578 - AluSg/x SINE Alu -14 296 74 23 0 0 0 chr9 36209052 36209075 -81653552 + AT_rich Low_complexity Low_complexity 1 23 0 399 243 128 40 chr9 36209161 36209465 -81653162 - L1MC5 LINE L1 -277 7684 7354 741 186 0 21 chr9 36209475 36209609 -81653018 + AluJb SINE Alu 2 134 -178 2539 62 0 0 chr9 36209609 36209901 -81652726 + AluY SINE Alu 2 293 -18 390 262 75 114 chr9 36210012 36210451 -81652176 - L1MB2 LINE L1 -872 5274 4853 1205 171 9 23 chr9 36210457 36210674 -81651953 + AluJb SINE Alu 87 300 -12 2098 92 29 57 chr9 36210676 36210990 -81651637 + AluY SINE Alu 1 305 -6 833 246 110 70 chr9 36211005 36211189 -81651438 - L1MB2 LINE L1 -1301 4845 4670 1745 178 3 44 chr9 36211189 36211509 -81651118 - AluJo SINE Alu -5 307 1 833 246 110 70 chr9 36211509 36211780 -81650847 - L1MB2 LINE L1 -1476 4670 4372 2329 103 0 0 chr9 36211797 36212088 -81650539 - AluY SINE Alu -20 291 1 35 0 0 0 chr9 36212091 36212126 -81650501 + AT_rich Low_complexity Low_complexity 1 35 0 647 211 41 147 chr9 36212298 36212318 -81650309 - L1MB2 LINE L1 -1757 4389 4368 1456 167 23 109 chr9 36212318 36212666 -81649961 - AluYb8 SINE Alu 0 318 1 647 211 41 147 chr9 36212666 36212984 -81649643 - L1MB2 LINE L1 -1778 4368 4104 2336 104 0 0 chr9 36212984 36213281 -81649346 + AluSx SINE Alu 1 297 -15 647 211 41 147 chr9 36213281 36213376 -81649251 - L1MB2 LINE L1 -2042 4104 4001 284 247 62 0 chr9 36213453 36213550 -81649077 + L1MC4 LINE L1 7940 8042 0 837 245 8 42 chr9 36213866 36214131 -81648496 + MIR SINE MIR 5 260 -2 198 275 0 0 chr9 36214273 36214342 -81648285 + (TA)n Simple_repeat Simple_repeat 1 69 0 251 216 115 101 chr9 36214366 36214514 -81648113 + Charlie8 DNA MER1_type 24 173 -2244 385 326 81 27 chr9 36214744 36214965 -81647662 + L1ME4a LINE L1 5659 5891 -230 683 76 98 8 chr9 36214982 36215114 -81647513 - L1MA8 LINE L1 -2 6289 6146 2281 82 0 0 chr9 36215158 36215428 -81647199 + AluSq SINE Alu 1 270 -43 230 135 0 0 chr9 36215428 36215465 -81647162 + AluSq SINE Alu 253 289 -14 3720 146 29 42 chr9 36215498 36215509 -81647118 + L1MA6 LINE L1 5510 5520 -780 1869 165 10 3 chr9 36215509 36215818 -81646809 + AluJb SINE Alu 1 311 -1 3720 146 29 42 chr9 36215818 36216360 -81646267 + L1MA6 LINE L1 5520 6051 -249 2550 84 0 0 chr9 36216360 36216671 -81645956 - AluSp SINE Alu -2 311 1 3720 146 29 42 chr9 36216671 36216918 -81645709 + L1MA6 LINE L1 6051 6300 0 228 35 0 0 chr9 36216931 36216960 -81645667 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2050 136 4 0 chr9 36216960 36217239 -81645388 - AluSx SINE Alu -32 280 1 2150 126 0 0 chr9 36218647 36218932 -81643695 + AluSq SINE Alu 1 285 -28 217 0 0 0 chr9 36218932 36218956 -81643671 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 1969 160 3 13 chr9 36218980 36219292 -81643335 + AluJb SINE Alu 2 310 -2 226 315 79 11 chr9 36219379 36219468 -81643159 + L3 LINE CR1 1226 1320 -257 2268 87 0 10 chr9 36221607 36221905 -81640722 + AluSx SINE Alu 1 295 -17 2584 63 7 0 chr9 36222715 36223018 -81639609 - AluY SINE Alu -6 305 1 322 213 88 110 chr9 36223052 36223188 -81639439 - L1MC5 LINE L1 -31 7930 7798 329 281 29 29 chr9 36223194 36223333 -81639294 + Tigger8 DNA MER2_type 401 539 -127 21 0 0 0 chr9 36223434 36223455 -81639172 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 36224786 36224808 -81637819 + AT_rich Low_complexity Low_complexity 1 22 0 216 267 31 27 chr9 36225118 36225234 -81637393 + MIR SINE MIR 38 207 -55 242 300 64 91 chr9 36225792 36225857 -81636770 - L2 LINE L2 -557 2757 2692 1432 213 52 9 chr9 36225857 36226181 -81636446 - MER58B DNA MER1_type 0 341 4 242 300 64 91 chr9 36226181 36226335 -81636292 - L2 LINE L2 -622 2692 2544 198 0 0 0 chr9 36226847 36226869 -81635758 + (GGA)n Simple_repeat Simple_repeat 1 22 0 185 235 278 17 chr9 36227443 36227558 -81635069 + MIR3 SINE MIR 1 145 -63 201 273 0 0 chr9 36227877 36227921 -81634706 - MIR SINE MIR 0 262 219 784 159 45 70 chr9 36227959 36228116 -81634511 + FRAM SINE Alu 6 158 -18 2000 137 10 7 chr9 36228116 36228409 -81634218 + AluJo SINE Alu 1 294 -18 505 238 19 9 chr9 36228410 36228536 -81634091 - MIR SINE MIR -62 146 45 1787 255 146 39 chr9 36228969 36229206 -81633421 - L2 LINE L2 -340 2974 2764 2025 122 7 0 chr9 36229206 36229494 -81633133 - AluSx SINE Alu -22 290 1 1787 255 146 39 chr9 36229494 36230052 -81632575 - L2 LINE L2 -550 2764 2094 2555 61 0 0 chr9 36230313 36230610 -81632017 - AluY SINE Alu -14 297 1 1368 169 111 69 chr9 36231189 36231621 -81631006 - LTR7 LTR ERV1 0 450 1 320 209 13 3 chr9 36232408 36232486 -81630141 - MIR SINE MIR -43 165 88 2733 23 7 3 chr9 36232506 36232816 -81629811 - AluY SINE Alu 0 311 1 2381 108 0 0 chr9 36232930 36233237 -81629390 + AluSx SINE Alu 1 307 -5 384 238 0 0 chr9 36233498 36233578 -81629049 - MIR SINE MIR -160 102 23 315 322 68 0 chr9 36233997 36234115 -81628512 - MIR3 SINE MIR -23 185 60 228 315 0 0 chr9 36234199 36234253 -81628374 + (TG)n Simple_repeat Simple_repeat 1 54 0 299 130 19 0 chr9 36234316 36234370 -81628257 + CT-rich Low_complexity Low_complexity 4 58 0 832 228 301 8 chr9 36234469 36234851 -81627776 + L2 LINE L2 2819 3312 -1 2067 121 10 7 chr9 36235473 36235770 -81626857 + AluSx SINE Alu 1 298 -14 239 0 32 0 chr9 36235770 36235801 -81626826 + (TA)n Simple_repeat Simple_repeat 2 33 0 986 158 12 12 chr9 36236055 36236220 -81626407 - AluSg/x SINE Alu -12 298 134 2498 80 0 0 chr9 36236221 36236520 -81626107 - AluSc SINE Alu -10 299 1 311 298 7 21 chr9 36236535 36236676 -81625951 - L1ME3 LINE L1 -295 5867 5729 758 263 11 0 chr9 36236808 36236983 -81625644 - MIR SINE MIR -4 258 82 413 289 95 28 chr9 36237006 36237259 -81625368 + L2 LINE L2 2318 2587 -727 341 310 83 39 chr9 36237480 36237709 -81624918 + L2 LINE L2 3025 3263 -9 507 182 94 39 chr9 36238013 36238215 -81624412 + MER106B DNA MER1_type 30 1059 0 414 264 68 27 chr9 36240324 36240472 -81622155 - MIR SINE MIR -70 192 39 768 243 78 10 chr9 36242242 36242448 -81620179 - MIR SINE MIR 0 262 43 1770 161 0 56 chr9 36242519 36242691 -81619936 - AluJb SINE Alu -7 305 158 2284 108 0 3 chr9 36242691 36242988 -81619639 - AluSx SINE Alu -12 300 5 1770 161 0 56 chr9 36242988 36243138 -81619489 - AluJb SINE Alu -154 158 1 687 154 112 0 chr9 36243138 36243307 -81619320 + Charlie5 DNA MER1_type 2398 2585 -27 222 274 161 45 chr9 36243373 36243418 -81619209 - L2 LINE L2 -1451 1863 1825 2335 100 30 0 chr9 36243418 36243719 -81618908 + AluSx SINE Alu 1 310 -2 222 274 161 45 chr9 36243719 36244052 -81618575 - L2 LINE L2 -1489 1825 1441 2277 94 13 3 chr9 36244487 36244786 -81617841 + AluSg SINE Alu 1 302 -8 360 202 115 49 chr9 36244917 36245100 -81617527 + MER102a DNA MER1_type 136 330 0 243 276 126 0 chr9 36245261 36245348 -81617279 - L3 LINE CR1 -550 1027 930 334 305 42 0 chr9 36245462 36245557 -81617070 - MIR SINE MIR -56 206 108 2057 120 50 0 chr9 36245689 36245972 -81616655 + AluSx SINE Alu 1 297 -15 774 251 62 19 chr9 36245972 36246183 -81616444 + MIR SINE MIR 29 248 -14 2038 146 0 0 chr9 36246603 36246897 -81615730 + AluSx SINE Alu 1 294 -18 257 300 113 0 chr9 36246908 36246988 -81615639 - MIR SINE MIR -149 113 25 287 360 18 0 chr9 36247002 36247113 -81615514 - MIR SINE MIR -65 143 31 746 283 261 11 chr9 36247349 36248073 -81614554 + L2 LINE L2 1842 2746 -568 2536 94 0 0 chr9 36248144 36248452 -81614175 - AluSq SINE Alu -3 310 3 186 133 0 0 chr9 36249225 36249255 -81613372 + (TCTG)n Simple_repeat Simple_repeat 1 30 0 447 265 51 0 chr9 36249503 36249601 -81613026 + L2 LINE L2 3210 3312 -1 202 260 0 0 chr9 36249611 36249661 -81612966 + L2 LINE L2 3184 3233 -39 2401 88 3 3 chr9 36249812 36250117 -81612510 + AluSp SINE Alu 1 305 -8 219 326 156 39 chr9 36250229 36250476 -81612151 + L2 LINE L2 2899 3202 -111 1934 147 20 17 chr9 36250476 36250776 -81611851 + AluJb SINE Alu 1 301 -11 219 326 156 39 chr9 36250776 36250887 -81611740 + L2 LINE L2 3202 3299 -14 204 97 0 0 chr9 36251333 36251364 -81611263 + (CA)n Simple_repeat Simple_repeat 2 32 0 670 118 0 0 chr9 36251379 36251472 -81611155 - AluS SINE Alu -219 94 2 408 94 62 0 chr9 36251472 36251536 -81611091 + MSTB LTR MaLR 359 426 0 2890 209 63 20 chr9 36251538 36252367 -81610260 + L1MC4a LINE L1 6944 7807 -1 518 148 61 31 chr9 36252386 36252530 -81610097 + L1MA9 LINE L1 6158 6290 -1 309 283 85 9 chr9 36252713 36252819 -81609808 + MIR3 SINE MIR 95 208 0 2477 103 0 0 chr9 36252987 36253299 -81609328 - AluSx SINE Alu 0 312 1 2097 116 0 30 chr9 36254421 36254722 -81607905 - AluJo SINE Alu -20 292 1 2466 150 46 9 chr9 36254727 36255180 -81607447 - L1MB3 LINE L1 0 6183 5714 1284 154 50 141 chr9 36255841 36256238 -81606389 + MLT1A1 LTR MaLR 1 361 -4 219 327 6 93 chr9 36256360 36256522 -81606105 - L2 LINE L2 -20 3252 3105 290 262 12 60 chr9 36256591 36256675 -81605952 + L2 LINE L2 3193 3272 0 590 200 138 31 chr9 36256790 36256950 -81605677 + MER20 DNA MER1_type 40 216 -3 221 275 14 29 chr9 36257053 36257122 -81605505 - L2 LINE L2 0 3313 3246 1823 163 14 0 chr9 36257122 36257417 -81605210 - AluJo SINE Alu -13 299 1 2124 110 62 0 chr9 36257743 36258034 -81604593 + AluSp SINE Alu 1 309 -4 1173 130 25 0 chr9 36258827 36258989 -81603638 - AluSg/x SINE Alu -18 292 127 934 173 6 46 chr9 36259555 36259728 -81602899 + FRAM SINE Alu 1 166 0 266 242 45 15 chr9 36260589 36260655 -81601972 - L2 LINE L2 -6 3307 3240 301 324 97 14 chr9 36260923 36261068 -81601559 - MIR SINE MIR 0 262 106 263 276 19 67 chr9 36261175 36261280 -81601347 + MIR SINE MIR 68 167 -95 537 235 131 7 chr9 36261415 36261568 -81601059 + MIR SINE MIR 90 261 -1 21 0 0 0 chr9 36261717 36261738 -81600889 + AT_rich Low_complexity Low_complexity 1 21 0 1939 111 61 14 chr9 36262229 36262508 -81600119 + AluSg SINE Alu 2 293 -17 398 230 47 37 chr9 36263296 36263436 -81599191 - L1MC4 LINE L1 -1339 6703 6610 346 247 90 17 chr9 36263324 36263468 -81599159 + L1MCa LINE L1 1981 2110 -4316 * 2196 117 3 3 chr9 36263829 36264127 -81598500 + AluSx SINE Alu 1 298 -14 304 183 0 14 chr9 36264128 36264199 -81598428 + MER53 DNA DNA 120 189 0 2610 68 0 0 chr9 36264240 36264547 -81598080 + AluY SINE Alu 1 307 -4 2306 121 0 3 chr9 36265078 36265391 -81597236 + AluSq SINE Alu 1 312 -1 2026 129 7 24 chr9 36265735 36266064 -81596563 + AluSx SINE Alu 1 312 0 190 267 22 0 chr9 36266130 36266175 -81596452 - L3b LINE CR1 -8 1575 1530 1829 126 11 0 chr9 36266347 36266609 -81596018 + AluSx SINE Alu 23 287 -25 204 258 21 9 chr9 36266700 36266761 -81595866 - L3b LINE CR1 -7 1575 1511 1953 149 0 3 chr9 36266889 36267184 -81595443 - AluSx SINE Alu -18 294 1 216 0 0 0 chr9 36267350 36267374 -81595253 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2109 154 0 0 chr9 36267404 36267709 -81594918 - AluSx SINE Alu -7 305 1 1177 143 0 26 chr9 36267723 36267912 -81594715 + AluJo SINE Alu 120 303 -9 2319 68 3 10 chr9 36268583 36268875 -81593752 - AluSc SINE Alu -19 290 1 446 248 113 38 chr9 36269198 36269331 -81593296 - L2 LINE L2 -6 3307 3165 21 0 0 0 chr9 36269366 36269387 -81593240 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 36269994 36270015 -81592612 + AT_rich Low_complexity Low_complexity 1 21 0 816 81 0 0 chr9 36270334 36270699 -81591928 + AluSg SINE Alu 1 365 0 1491 192 3 31 chr9 36270719 36271037 -81591590 + AluJo SINE Alu 1 309 -3 1514 205 0 7 chr9 36271099 36271396 -81591231 + AluJb SINE Alu 1 295 -17 986 227 14 18 chr9 36271714 36271934 -81590693 - MER20 DNA MER1_type 0 219 1 2270 74 7 7 chr9 36272341 36272650 -81589977 + AluSc SINE Alu 1 309 0 2116 116 0 13 chr9 36273788 36274099 -81588528 + AluSg SINE Alu 1 307 -3 1985 130 3 0 chr9 36274365 36274657 -81587970 + AluSq SINE Alu 1 293 -20 823 121 0 16 chr9 36274728 36274852 -81587775 - FLAM_C SINE Alu -16 127 6 401 277 125 0 chr9 36275801 36275985 -81586642 - L1M4 LINE L1 -1890 4256 4050 44 46 0 0 chr9 36276024 36276089 -81586538 + AT_rich Low_complexity Low_complexity 1 65 0 1713 179 145 39 chr9 36276152 36276560 -81586067 - LTR32 LTR ERVL -7 464 14 295 213 64 85 chr9 36276653 36276687 -81585940 + L1ME LINE L1 5380 5413 -751 1922 141 3 0 chr9 36276687 36276984 -81585643 + AluSx SINE Alu 1 298 -14 295 213 64 85 chr9 36276984 36277090 -81585537 + L1ME LINE L1 5413 5517 -647 403 279 61 20 chr9 36277485 36277632 -81584995 - MIR SINE MIR -51 211 59 1496 177 45 10 chr9 36278625 36278913 -81583714 + AluJo SINE Alu 1 298 -14 5863 130 16 16 chr9 36279446 36280401 -81582226 - LTR5 LTR ERVK -14 955 1 24 32 0 0 chr9 36280789 36280820 -81581807 + AT_rich Low_complexity Low_complexity 1 31 0 298 296 15 12 chr9 36281152 36281307 -81581320 + L1M4 LINE L1 3767 3923 -2223 1460 160 31 35 chr9 36281372 36281659 -81580968 - AluJo SINE Alu -26 286 1 1879 153 3 6 chr9 36281732 36282045 -81580582 + AluSx SINE Alu 1 312 0 203 61 30 0 chr9 36282321 36282354 -81580273 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1768 125 84 0 chr9 36282476 36282763 -81579864 + AluSq SINE Alu 1 311 -2 1993 156 18 0 chr9 36282801 36283135 -81579492 - L1PB4 LINE L1 -2 6154 5815 259 189 27 0 chr9 36283139 36283213 -81579414 - L1PA16 LINE L1 -9 6156 6082 * 695 132 26 0 chr9 36283200 36283314 -81579313 - L1PB4 LINE L1 -327 5829 5713 399 158 44 70 chr9 36283322 36283436 -81579191 + L1PB4 LINE L1 5621 5731 -425 311 115 0 19 chr9 36283479 36283531 -81579096 + Alu SINE Alu 249 299 -2 1328 296 29 12 chr9 36283531 36284194 -81578433 + L1M4 LINE L1 3294 3967 -2179 593 239 72 61 chr9 36284191 36284305 -81578322 + L1MEc LINE L1 1905 2016 -4380 * 2309 84 0 0 chr9 36284305 36284603 -81578024 + AluY SINE Alu 1 298 -13 258 32 0 0 chr9 36284603 36284634 -81577993 + (TA)n Simple_repeat Simple_repeat 1 31 0 593 239 72 61 chr9 36284634 36284671 -81577956 + L1MEc LINE L1 2016 2051 -4345 2070 97 10 13 chr9 36284671 36284969 -81577658 - AluSx SINE Alu -15 297 1 593 239 72 61 chr9 36284969 36285175 -81577452 + L1MEc LINE L1 2051 2268 -4128 1288 192 7 46 chr9 36285187 36285468 -81577159 + AluJo SINE Alu 13 282 -30 604 286 70 36 chr9 36285471 36285827 -81576800 + L1MEc LINE L1 2211 2578 -3637 608 200 19 76 chr9 36285845 36286055 -81576572 + L1MEc LINE L1 2757 2954 -3261 3134 189 66 14 chr9 36286111 36286811 -81575816 - L1MB4 LINE L1 -40 6140 5405 2227 285 42 13 chr9 36286823 36287811 -81574816 - L1M4 LINE L1 -2647 3499 2483 571 190 121 46 chr9 36287797 36287971 -81574656 - L1MA9 LINE L1 0 6312 6126 * 437 306 162 46 chr9 36289905 36290337 -81572290 + L1M4 LINE L1 4791 5272 -874 27 29 0 0 chr9 36290370 36290404 -81572223 + AT_rich Low_complexity Low_complexity 1 34 0 1008 146 0 22 chr9 36292022 36292200 -81570427 - AluJb SINE Alu -1 311 138 270 336 23 0 chr9 36292218 36292349 -81570278 + (CCAA)n Simple_repeat Simple_repeat 3 136 0 225 275 214 64 chr9 36292349 36292375 -81570252 - L2 LINE L2 0 3272 3251 1846 140 0 20 chr9 36292375 36292675 -81569952 + AluSx SINE Alu 1 294 -18 225 275 214 64 chr9 36292675 36293190 -81569437 - L2 LINE L2 -21 3251 2246 443 275 136 53 chr9 36293233 36293562 -81569065 - L2 LINE L2 -74 3239 2867 1906 116 0 72 chr9 36293562 36293882 -81568745 + AluSx SINE Alu 1 297 -15 443 275 136 53 chr9 36293882 36293993 -81568634 - L2 LINE L2 -446 2867 2767 255 125 0 0 chr9 36294738 36294778 -81567849 + (CA)n Simple_repeat Simple_repeat 1 40 0 280 306 45 8 chr9 36295205 36295339 -81567288 - MIR3 SINE MIR -69 139 1 2037 102 14 7 chr9 36296789 36297082 -81565545 - AluSx SINE Alu -17 295 1 224 294 28 46 chr9 36297635 36297744 -81564883 - L2 LINE L2 -493 2821 2715 368 123 0 0 chr9 36298342 36298399 -81564228 - MER53 DNA DNA 0 189 133 459 0 0 0 chr9 36298480 36298531 -81564096 + (CA)n Simple_repeat Simple_repeat 2 52 0 2070 127 0 10 chr9 36298557 36298871 -81563756 + AluSx SINE Alu 1 311 -1 1386 143 0 0 chr9 36298874 36299090 -81563537 - AluSq SINE Alu -7 306 91 191 150 0 25 chr9 36400385 36400425 -81462202 - L2 LINE L2 -303 2969 2931 280 246 66 0 chr9 36400854 36400915 -81461712 - L2 LINE L2 -6 3266 3202 23 54 0 0 chr9 36401425 36401462 -81461165 + GC_rich Low_complexity Low_complexity 1 37 0 839 203 136 25 chr9 36403340 36403576 -81459051 + MIR SINE MIR 1 262 0 2095 134 0 13 chr9 36403808 36404106 -81458521 + AluJb SINE Alu 1 294 -18 2106 115 28 3 chr9 36404108 36404395 -81458232 + AluSx SINE Alu 1 294 -18 2436 87 0 0 chr9 36404397 36404696 -81457931 + AluSg SINE Alu 1 299 -11 1310 117 5 25 chr9 36404696 36404892 -81457735 + AluSg SINE Alu 1 192 -118 21 0 0 0 chr9 36405016 36405037 -81457590 + AT_rich Low_complexity Low_complexity 1 21 0 183 299 172 26 chr9 36405413 36405761 -81456866 + L2 LINE L2 1673 2071 -1243 * 417 277 191 11 chr9 36405747 36405942 -81456685 - MIR SINE MIR 0 262 35 2251 111 0 40 chr9 36406085 36406410 -81456217 - AluSx SINE Alu 0 312 1 729 267 93 0 chr9 36406419 36406719 -81455908 - L1ME4a LINE L1 -273 5848 5521 1487 161 0 21 chr9 36407851 36408087 -81454540 + AluSx SINE Alu 1 231 -81 401 164 0 0 chr9 36408188 36408243 -81454384 + AluSx SINE Alu 227 281 -30 234 0 0 0 chr9 36408248 36408274 -81454353 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 270 109 0 0 chr9 36408282 36408328 -81454299 + L1MB3 LINE L1 6131 6176 -7 1849 153 0 18 chr9 36409861 36410142 -81452485 + AluJb SINE Alu 1 276 -36 312 27 0 0 chr9 36410142 36410179 -81452448 + (TG)n Simple_repeat Simple_repeat 1 37 0 * 324 0 0 0 chr9 36410178 36410214 -81452413 + (GA)n Simple_repeat Simple_repeat 1 36 0 372 326 141 5 chr9 36410755 36410939 -81451688 - MIR SINE MIR -5 257 49 343 262 85 7 chr9 36410982 36411123 -81451504 + MARNA DNA Mariner 25 176 -410 560 342 66 57 chr9 36411360 36411423 -81451204 - L2 LINE L2 -17 3255 3194 1726 141 56 11 chr9 36411423 36411692 -81450935 + AluJb SINE Alu 1 281 -31 560 342 66 57 chr9 36411692 36412497 -81450130 - L2 LINE L2 -78 3194 2372 1847 155 17 3 chr9 36413352 36413642 -81448985 - AluJb SINE Alu -18 294 1 2039 94 4 0 chr9 36413769 36414062 -81448565 + AluSq SINE Alu 26 319 0 199 250 83 0 chr9 36415562 36415634 -81446993 + L2 LINE L2 2826 2903 -411 1356 122 19 42 chr9 36415725 36415938 -81446689 - AluJb SINE Alu -20 292 85 199 261 65 43 chr9 36417005 36417097 -81445530 - MIR SINE MIR -95 113 20 913 146 0 0 chr9 36418767 36418904 -81443723 + FLAM_C SINE Alu 5 141 -2 2266 73 0 0 chr9 36418911 36419183 -81443444 + AluY SINE Alu 40 311 0 940 191 19 0 chr9 36419196 36419386 -81443241 + AluJb SINE Alu 118 310 0 224 217 0 0 chr9 36419675 36419721 -81442906 + (CA)n Simple_repeat Simple_repeat 1 46 0 721 200 0 22 chr9 36419914 36420049 -81442578 + FLAM_A SINE Alu 1 132 -1 241 255 113 9 chr9 36420064 36420170 -81442457 - L1ME4a LINE L1 -16 6105 5989 467 249 132 7 chr9 36420242 36420404 -81442223 + MIR SINE MIR 2 193 -15 428 273 182 35 chr9 36420646 36421042 -81441585 + L2 LINE L2 1859 2312 -1002 736 206 0 0 chr9 36421192 36421318 -81441309 - FLAM_C SINE Alu -17 126 1 329 183 0 14 chr9 36421318 36421389 -81441238 - L1MD3 LINE L1 -17 7978 7909 984 135 45 19 chr9 36421389 36421627 -81441000 - L1MD3 LINE L1 -688 7104 6845 206 391 35 30 chr9 36421711 36421908 -81440719 + L2 LINE L2 2571 2768 -546 2822 32 0 0 chr9 36422241 36422551 -81440076 + AluY SINE Alu 1 310 -1 238 273 153 30 chr9 36422722 36422889 -81439738 - MIR SINE MIR -46 216 23 667 193 123 21 chr9 36423315 36423502 -81439125 - MIR SINE MIR 0 262 57 278 368 132 0 chr9 36424033 36424169 -81438458 - L2 LINE L2 0 3272 3119 265 335 111 6 chr9 36424218 36424557 -81438070 - L2 LINE L2 -274 2998 2557 218 254 88 79 chr9 36425738 36425852 -81436775 + MIR SINE MIR 68 182 -80 2616 144 49 26 chr9 36428008 36428502 -81434125 - MLT1D LTR MaLR 0 505 1 2339 157 18 32 chr9 36430136 36430576 -81432051 - Tigger2a DNA MER2_type 0 434 1 208 306 41 0 chr9 36431866 36431964 -81430663 + (CTCA)n Simple_repeat Simple_repeat 2 103 0 185 323 10 10 chr9 36432116 36432212 -81430415 - L2 LINE L2 -214 3058 2963 278 299 43 34 chr9 36432510 36432627 -81430000 - L2 LINE L2 -562 2752 2635 655 24 0 0 chr9 36432780 36432864 -81429763 + AluYb8 SINE Alu 235 318 0 223 327 28 9 chr9 36432889 36432996 -81429631 - L2 LINE L2 -982 2332 2224 434 260 79 0 chr9 36434525 36434652 -81427975 - MIR SINE MIR -5 257 121 194 234 0 21 chr9 36436278 36436325 -81426302 - L2 LINE L2 -222 3050 3005 181 300 0 0 chr9 36437993 36438033 -81424594 + MIR SINE MIR 221 260 -2 2064 137 6 16 chr9 36438033 36438348 -81424279 - AluSx SINE Alu 0 312 1 324 254 97 74 chr9 36438822 36439039 -81423588 - L2 LINE L2 -822 2492 2271 539 176 29 0 chr9 36440642 36440744 -81421883 - MIR SINE MIR -71 137 33 290 271 8 8 chr9 36443424 36443546 -81419081 + (TCTCTG)n Simple_repeat Simple_repeat 4 125 0 201 217 0 33 chr9 36443619 36443679 -81418948 + (TCTCTG)n Simple_repeat Simple_repeat 2 59 0 294 173 0 0 chr9 36444118 36444193 -81418434 + (CTCGG)n Simple_repeat Simple_repeat 5 79 0 296 274 126 15 chr9 36445022 36445157 -81417470 + L2 LINE L2 2150 2299 -1015 525 175 97 0 chr9 36445172 36445286 -81417341 + MIR SINE MIR 54 178 -84 213 329 160 31 chr9 36445652 36446002 -81416625 - L2 LINE L2 -514 2800 2406 316 277 10 0 chr9 36446010 36446111 -81416516 - L2 LINE L2 -1043 2271 2170 231 329 66 13 chr9 36446113 36446265 -81416362 - MLT1K LTR MaLR -48 540 381 195 69 0 0 chr9 36446414 36446443 -81416184 + (TCC)n Simple_repeat Simple_repeat 3 31 0 20392 47 5 2 chr9 36447570 36451023 -81411604 - L1PA5 LINE L1 -5 6149 2689 20032 67 6 11 chr9 36451322 36454038 -81408589 - L1PA5 LINE L1 -3433 2713 13 1984 139 30 3 chr9 36454040 36454341 -81408286 - AluSg SINE Alu -1 309 1 544 291 74 0 chr9 36454419 36454608 -81408019 - LTR67 LTR ERVL -2 555 353 703 258 68 95 chr9 36454801 36455201 -81407426 - MLT1I LTR MaLR 0 409 21 2130 118 7 3 chr9 36455976 36456295 -81406332 - AluSx SINE Alu 0 312 1 273 197 0 0 chr9 36456685 36456751 -81405876 + CT-rich Low_complexity Low_complexity 2 67 0 377 300 40 87 chr9 36457070 36457393 -81405234 - L2 LINE L2 -1188 2126 1819 1974 152 0 26 chr9 36457401 36457711 -81404916 + AluJo SINE Alu 1 302 -10 2423 55 41 7 chr9 36458042 36458335 -81404292 + AluY SINE Alu 1 303 -8 308 174 105 23 chr9 36458367 36458453 -81404174 + L1MC5 LINE L1 7611 7703 -258 24 0 0 0 chr9 36458555 36458579 -81404048 + AT_rich Low_complexity Low_complexity 1 24 0 281 238 95 40 chr9 36458580 36458706 -81403921 + L1MC5 LINE L1 7729 7861 -100 562 310 13 77 chr9 36460364 36460664 -81401963 + L2 LINE L2 2992 3272 0 183 362 24 31 chr9 36461343 36461470 -81401157 + MIR SINE MIR 51 176 -86 2321 112 7 0 chr9 36461521 36461817 -81400810 + AluSx SINE Alu 1 298 -14 732 289 125 42 chr9 36462244 36462645 -81399982 - L3 LINE CR1 -243 1334 901 444 328 114 22 chr9 36462916 36463187 -81399440 + L3 LINE CR1 931 1226 -351 1965 164 3 7 chr9 36463497 36463802 -81398825 - AluJo SINE Alu -8 304 1 386 313 20 35 chr9 36464046 36464244 -81398383 - MER117 DNA MER1_type -2 195 1 1547 93 4 4 chr9 36464516 36464741 -81397886 + L1PB2 LINE L1 5927 6151 0 1488 153 0 13 chr9 36464788 36465016 -81397611 + AluJb SINE Alu 1 225 -87 634 194 90 0 chr9 36465469 36465603 -81397024 + MER103 DNA DNA 2 147 -19 2100 126 14 3 chr9 36465766 36466060 -81396567 + AluJb SINE Alu 1 297 -15 2268 97 3 0 chr9 36466162 36466452 -81396175 - AluSg1 SINE Alu -18 291 1 208 359 119 9 chr9 36468129 36468449 -81394178 + L2 LINE L2 2411 2765 -549 2345 103 0 3 chr9 36469892 36470193 -81392434 + AluSc SINE Alu 1 300 -9 23 0 0 0 chr9 36470523 36470546 -81392081 + AT_rich Low_complexity Low_complexity 1 23 0 414 256 26 43 chr9 36470803 36470920 -81391707 + L2 LINE L2 3154 3268 -4 1412 154 5 5 chr9 36471202 36471422 -81391205 - AluJb SINE Alu -11 301 82 2213 133 0 0 chr9 36471647 36471947 -81390680 + AluSx SINE Alu 1 300 -12 889 121 23 30 chr9 36473261 36473393 -81389234 - AluJo SINE Alu -159 153 23 1919 169 3 10 chr9 36473414 36473728 -81388899 - AluSx SINE Alu 0 312 1 1731 230 88 63 chr9 36473736 36474989 -81387638 + L1MEc LINE L1 1841 3102 -3113 1938 141 9 52 chr9 36474993 36475319 -81387308 + AluJb SINE Alu 1 312 0 2029 121 7 7 chr9 36475338 36475627 -81387000 + AluSg SINE Alu 3 291 -19 346 151 9 85 chr9 36475628 36475734 -81386893 + L1MEc LINE L1 3918 4015 -2200 655 317 35 4 chr9 36476013 36476243 -81386384 - MIR SINE MIR -18 244 8 1847 183 3 0 chr9 36476469 36476764 -81385863 + AluJb SINE Alu 1 296 -16 366 495 53 18 chr9 36476931 36477042 -81385585 - L1MC4a LINE L1 -1910 5898 5792 871 73 78 92 chr9 36477042 36477123 -81385504 - L1MA8 LINE L1 -5 6286 6205 315 0 0 0 chr9 36477123 36477158 -81385469 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2171 109 3 0 chr9 36477158 36477441 -81385186 - AluSx SINE Alu -28 284 1 871 73 78 92 chr9 36477441 36477538 -81385089 - L1MA8 LINE L1 -85 6206 6109 333 93 0 0 chr9 36477538 36477592 -81385035 + (TTGG)n Simple_repeat Simple_repeat 2 55 0 1750 172 3 11 chr9 36477592 36477877 -81384750 - AluJo SINE Alu -29 283 1 871 73 78 92 chr9 36477877 36477901 -81384726 - L1MA8 LINE L1 -180 6111 6084 366 495 53 18 chr9 36477901 36478010 -81384617 - L1MC4a LINE L1 -2016 5792 5688 2560 84 0 0 chr9 36478010 36478319 -81384308 - AluSg SINE Alu 0 310 2 366 495 53 18 chr9 36478319 36478477 -81384150 - L1MC4a LINE L1 -2120 5688 5506 265 206 15 73 chr9 36478503 36478571 -81384056 - L2 LINE L2 -5 3267 3204 765 243 4 98 chr9 36478993 36479248 -81383379 - MIR SINE MIR -9 253 23 24 0 0 0 chr9 36479280 36479304 -81383323 + AT_rich Low_complexity Low_complexity 1 24 0 339 338 45 0 chr9 36479524 36479657 -81382970 + MIR SINE MIR 119 257 -5 1426 170 0 12 chr9 36480461 36480702 -81381925 - AluJo SINE Alu -4 308 71 717 253 6 0 chr9 36480796 36480954 -81381673 + MIR SINE MIR 88 246 -16 189 0 0 0 chr9 36481358 36481379 -81381248 + (TC)n Simple_repeat Simple_repeat 2 22 0 216 0 0 0 chr9 36481379 36481403 -81381224 + (T)n Simple_repeat Simple_repeat 1 24 0 1700 132 0 0 chr9 36481405 36481640 -81380987 - AluSx SINE Alu -77 235 1 231 242 167 0 chr9 36481977 36482043 -81380584 - L2 LINE L2 -40 3232 3156 285 308 0 19 chr9 36482078 36482185 -81380442 + 7SK RNA RNA 3 107 -86 364 253 77 100 chr9 36483376 36483546 -81379081 - MIR3 SINE MIR -18 190 25 248 281 0 0 chr9 36483832 36483905 -81378722 + G-rich Low_complexity Low_complexity 1 73 0 1384 155 24 16 chr9 36483930 36484181 -81378446 + AluSg SINE Alu 41 293 -17 2166 94 10 14 chr9 36484183 36484471 -81378156 + AluSq SINE Alu 1 287 -26 6573 118 84 161 chr9 36484730 36486566 -81376061 - pTR5 LTR ERV1 0 2438 743 869 223 98 101 chr9 36486785 36487158 -81375469 - L1ME4a LINE L1 -56 6065 5693 2224 138 3 0 chr9 36487158 36487469 -81375158 + AluSx SINE Alu 1 312 0 869 223 98 101 chr9 36487469 36487777 -81374850 - L1ME4a LINE L1 -428 5693 5386 327 300 86 38 chr9 36489439 36489649 -81372978 - MIR SINE MIR -12 250 31 30 59 0 0 chr9 36489666 36489717 -81372910 + AT_rich Low_complexity Low_complexity 1 51 0 2791 164 20 2 chr9 36489831 36490325 -81372302 - L1MB8 LINE L1 0 6178 5676 2450 66 0 10 chr9 36490408 36490709 -81371918 - AluY SINE Alu -13 298 1 718 295 60 13 chr9 36491319 36491553 -81371074 - MIR SINE MIR -10 252 8 387 268 24 24 chr9 36491863 36491986 -81370641 + L2 LINE L2 3190 3312 -1 331 319 35 43 chr9 36491992 36492133 -81370494 + MIR3 SINE MIR 46 185 -23 2265 96 0 14 chr9 36492791 36493084 -81369543 + AluSc SINE Alu 1 289 -20 376 341 60 11 chr9 36495227 36495409 -81367218 + MIR SINE MIR 22 212 -50 378 0 0 0 chr9 36495717 36495759 -81366868 + (TA)n Simple_repeat Simple_repeat 2 43 0 1958 147 0 3 chr9 36495759 36496044 -81366583 - AluJb SINE Alu -28 284 1 245 280 97 11 chr9 36498421 36498514 -81364113 + L3 LINE CR1 969 1069 -508 500 259 184 33 chr9 36498582 36498794 -81363833 + MIR SINE MIR 19 262 0 269 294 117 12 chr9 36498810 36498973 -81363654 + L3 LINE CR1 1184 1363 -214 575 299 23 32 chr9 36499274 36499491 -81363136 - MIR SINE MIR -36 226 12 310 263 40 72 chr9 36499764 36499916 -81362711 + MIR3 SINE MIR 30 176 -32 255 262 217 51 chr9 36500663 36500838 -81361789 - MIR3 SINE MIR -59 203 13 822 268 28 40 chr9 36501426 36501676 -81360951 - MIR SINE MIR -8 254 8 217 296 9 0 chr9 36502514 36502622 -81360005 + (CA)n Simple_repeat Simple_repeat 1 109 0 21 0 0 0 chr9 36503750 36503771 -81358856 + AT_rich Low_complexity Low_complexity 1 21 0 371 259 35 12 chr9 36504238 36504323 -81358304 - MIR3 SINE MIR -50 158 72 296 241 0 0 chr9 36504374 36504432 -81358195 - L2 LINE L2 -6 3307 3250 1670 204 124 18 chr9 36504436 36504902 -81357725 + L1ME3 LINE L1 5480 5996 -166 1336 177 99 31 chr9 36504914 36505236 -81357391 + MER2 DNA MER2_type 1 344 0 2313 77 0 21 chr9 36505264 36505570 -81357057 + AluY SINE Alu 1 300 0 565 304 68 52 chr9 36505845 36506227 -81356400 + L2 LINE L2 2924 3311 -2 694 346 47 7 chr9 36506320 36506618 -81356009 - L2 LINE L2 -1184 2130 1821 335 291 31 8 chr9 36506634 36506761 -81355866 - L2 LINE L2 -1608 1706 1577 304 325 106 0 chr9 36507425 36507548 -81355079 + L2 LINE L2 3137 3272 0 200 219 0 0 chr9 36507548 36507589 -81355038 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 599 227 17 8 chr9 36507978 36508097 -81354530 + L2 LINE L2 3190 3309 -4 403 314 32 0 chr9 36508351 36508475 -81354152 - L2 LINE L2 0 3272 3145 191 337 44 72 chr9 36508607 36508856 -81353771 - L2 LINE L2 -356 2958 2717 184 274 32 32 chr9 36509014 36509076 -81353551 + L2 LINE L2 3159 3220 -93 763 216 39 43 chr9 36509391 36509623 -81353004 + L1ME1 LINE L1 5930 6160 -6 2199 107 13 10 chr9 36509648 36509779 -81352848 + AluSq SINE Alu 5 134 -179 2344 71 0 14 chr9 36509779 36510095 -81352532 + AluY SINE Alu 1 311 0 2199 107 13 10 chr9 36510095 36510271 -81352356 + AluSq SINE Alu 134 313 0 1961 167 0 0 chr9 36511175 36511487 -81351140 + AluSx SINE Alu 1 312 0 201 214 0 0 chr9 36513030 36513072 -81349555 + L2 LINE L2 3263 3304 -9 610 231 99 28 chr9 36513428 36513610 -81349017 + MIR SINE MIR 50 244 -18 202 290 52 32 chr9 36513615 36513770 -81348857 + (TCTCTG)n Simple_repeat Simple_repeat 4 161 0 240 184 40 13 chr9 36514242 36514318 -81348309 + (TCTCTG)n Simple_repeat Simple_repeat 1 78 0 321 258 5 43 chr9 36515131 36515317 -81347310 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 385 323 6 0 chr9 36515377 36515535 -81347092 + GA-rich Low_complexity Low_complexity 2 160 0 425 281 112 36 chr9 36516410 36516688 -81345939 + L2 LINE L2 2606 2904 -410 2305 91 3 3 chr9 36516885 36517182 -81345445 - AluSx SINE Alu -15 297 1 182 255 0 0 chr9 36517563 36517610 -81345017 - L2 LINE L2 -308 2964 2918 2404 93 6 3 chr9 36517729 36518041 -81344586 + AluSp SINE Alu 1 313 0 1116 238 75 39 chr9 36518192 36518553 -81344074 - L2 LINE L2 0 3313 2940 1652 198 51 70 chr9 36519005 36519475 -81343152 + MLT1C LTR MaLR 2 462 -5 861 307 132 35 chr9 36519502 36520221 -81342406 + L2 LINE L2 905 1714 -1600 195 69 0 0 chr9 36520221 36520250 -81342377 + (CAA)n Simple_repeat Simple_repeat 2 30 0 861 307 132 35 chr9 36520250 36520350 -81342277 + L2 LINE L2 1714 1803 -1511 2407 69 3 0 chr9 36521512 36521801 -81340826 + AluSp SINE Alu 1 290 -23 533 175 19 0 chr9 36528380 36528483 -81334144 + MER81 DNA DNA 2 106 -8 255 213 16 47 chr9 36529325 36529452 -81333175 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 319 253 65 65 chr9 36529550 36529683 -81332944 + L1M2 LINE L1 1762 1897 -4952 2301 87 7 0 chr9 36529683 36529992 -81332635 + AluSx SINE Alu 1 311 -1 319 253 65 65 chr9 36529992 36530012 -81332615 + L1M2 LINE L1 1896 1915 -4934 22 35 0 0 chr9 36532914 36532943 -81329684 + GC_rich Low_complexity Low_complexity 1 29 0 733 303 65 16 chr9 36535306 36535629 -81326998 + L2 LINE L2 2018 2356 -958 945 264 90 42 chr9 36535668 36536069 -81326558 + LTR16C LTR ERVL 72 491 0 252 264 178 54 chr9 36536105 36536381 -81326246 + L2 LINE L2 2425 2734 -580 290 313 17 28 chr9 36537898 36538074 -81324553 + GA-rich Low_complexity Low_complexity 5 178 0 283 260 0 0 chr9 36539189 36539289 -81323338 + (CAGA)n Simple_repeat Simple_repeat 1 100 0 298 265 31 20 chr9 36539683 36539781 -81322846 - MIR SINE MIR -139 123 25 258 32 0 0 chr9 36540116 36540147 -81322480 + (CA)n Simple_repeat Simple_repeat 1 31 0 218 264 35 40 chr9 36540334 36540508 -81322119 + GA-rich Low_complexity Low_complexity 2 174 0 226 208 13 65 chr9 36542427 36542504 -81320123 + (CAGAGA)n Simple_repeat Simple_repeat 2 74 0 240 111 0 0 chr9 36544217 36544262 -81318365 + (CCCA)n Simple_repeat Simple_repeat 3 47 0 202 71 24 24 chr9 36546481 36546523 -81316104 + (CGGG)n Simple_repeat Simple_repeat 3 44 0 23 54 0 0 chr9 36546712 36546749 -81315878 + GC_rich Low_complexity Low_complexity 1 37 0 198 143 0 0 chr9 36546822 36546857 -81315770 + (CGAG)n Simple_repeat Simple_repeat 4 38 0 229 268 13 36 chr9 36547960 36548177 -81314450 + GA-rich Low_complexity Low_complexity 1 211 0 241 284 30 0 chr9 36548565 36548632 -81313995 - L3b LINE CR1 -191 1392 1324 743 309 45 4 chr9 36550162 36550405 -81312222 - MIR SINE MIR -1 261 9 451 256 24 72 chr9 36550447 36550551 -81312076 - MIR SINE MIR 0 262 155 1904 157 0 10 chr9 36550551 36550857 -81311770 + AluSx SINE Alu 1 303 -9 451 256 24 72 chr9 36550857 36551026 -81311601 - MIR SINE MIR -107 155 7 243 61 0 0 chr9 36552488 36552521 -81310106 + (CCG)n Simple_repeat Simple_repeat 2 34 0 183 139 0 0 chr9 36552570 36552606 -81310021 + (TCCC)n Simple_repeat Simple_repeat 3 38 0 23 33 0 0 chr9 36552616 36552646 -81309981 + GC_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr9 36552674 36552737 -81309890 + GC_rich Low_complexity Low_complexity 1 63 0 192 40 0 0 chr9 36552971 36552996 -81309631 + (CA)n Simple_repeat Simple_repeat 1 25 0 358 318 125 5 chr9 36557102 36557294 -81305333 + MIR SINE MIR 14 228 -34 366 265 245 20 chr9 36557926 36558122 -81304505 + MIR SINE MIR 2 241 -21 4767 121 109 96 chr9 36558124 36559661 -81302966 + pTR5 LTR ERV1 145 2438 0 1224 259 109 57 chr9 36560094 36560386 -81302241 + HAL1b LINE L1 70 345 -1003 855 150 0 8 chr9 36560386 36560519 -81302108 + FLAM_C SINE Alu 1 132 -1 1224 259 109 57 chr9 36560519 36560946 -81301681 + HAL1b LINE L1 345 773 -575 385 123 0 0 chr9 36560947 36561004 -81301623 + Tigger2 DNA MER2_type 1 57 -2661 2007 85 88 20 chr9 36561018 36561372 -81301255 + Tigger2 DNA MER2_type 2280 2657 -61 517 253 91 77 chr9 36561384 36561500 -81301127 + HAL1b LINE L1 827 940 -408 2055 136 7 0 chr9 36561500 36561810 -81300817 - AluJb SINE Alu 0 312 1 517 253 91 77 chr9 36561810 36561970 -81300657 + HAL1b LINE L1 940 1096 -252 2489 55 0 3 chr9 36561970 36562277 -81300350 - AluY SINE Alu -5 306 1 517 253 91 77 chr9 36562277 36562506 -81300121 + HAL1b LINE L1 1096 1340 -8 223 279 0 38 chr9 36562508 36562587 -81300040 + MIR SINE MIR 77 152 -110 1782 146 82 31 chr9 36562634 36563058 -81299569 + MLT1D LTR MaLR 2 447 -58 1176 92 69 0 chr9 36563060 36563233 -81299394 - AluSg/x SINE Alu -4 308 124 306 102 0 0 chr9 36563234 36563283 -81299344 + MLT1D LTR MaLR 454 502 -3 230 317 106 40 chr9 36563284 36563511 -81299116 + L2 LINE L2 2935 3176 -96 195 42 0 0 chr9 36563817 36563841 -81298786 + (TG)n Simple_repeat Simple_repeat 1 24 0 319 314 12 12 chr9 36563894 36564066 -81298561 + (TG)n Simple_repeat Simple_repeat 1 172 0 1145 112 0 41 chr9 36564683 36564826 -81297801 - AluJ SINE Alu -17 295 158 3839 94 28 20 chr9 36564826 36565370 -81297257 + LTR14 LTR ERVK 1 548 0 1145 112 0 41 chr9 36565370 36565395 -81297232 - AluJ SINE Alu -154 158 134 928 113 0 23 chr9 36565395 36565528 -81297099 - AluJ SINE Alu -172 130 1 362 176 0 0 chr9 36565528 36565596 -81297031 - L1MB3 LINE L1 -39 6144 6077 555 280 74 33 chr9 36566382 36566465 -81296162 + MIR SINE MIR 8 86 -176 1987 131 13 3 chr9 36566465 36566770 -81295857 - AluSx SINE Alu -4 308 1 555 280 74 33 chr9 36566770 36566849 -81295778 + MIR SINE MIR 86 160 -102 1870 146 30 0 chr9 36566849 36567150 -81295477 - AluJb SINE Alu -2 310 1 555 280 74 33 chr9 36567150 36567229 -81295398 + MIR SINE MIR 160 260 -2 190 308 108 0 chr9 36567260 36567325 -81295302 - L2 LINE L2 -1030 2284 2213 759 113 9 0 chr9 36567330 36567436 -81295191 + AluSq/x SINE Alu 1 107 -206 1802 171 3 19 chr9 36619577 36619887 -81242740 - AluJb SINE Alu -7 305 1 2889 195 76 48 chr9 36619893 36619904 -81242723 - L1M4c LINE L1 -4116 2530 2521 918 145 0 0 chr9 36619904 36620035 -81242592 - FLAM_C SINE Alu -2 131 1 2889 195 76 48 chr9 36620035 36620356 -81242271 - L1M4c LINE L1 -4125 2521 2210 1915 142 48 0 chr9 36620356 36620645 -81241982 - AluJo SINE Alu -8 304 2 2889 195 76 48 chr9 36620645 36620656 -81241971 - L1M4c LINE L1 -4436 2210 2201 2314 113 0 0 chr9 36620656 36620956 -81241671 - AluSx SINE Alu -12 300 1 2889 195 76 48 chr9 36620956 36621056 -81241571 - L1M4c LINE L1 -4445 2201 2105 207 0 0 0 chr9 36621056 36621079 -81241548 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2889 195 76 48 chr9 36621079 36621854 -81240773 - L1M4c LINE L1 -4541 2105 1185 1067 217 31 25 chr9 36621977 36622299 -81240328 - L1M4c LINE L1 -5339 1203 880 246 314 113 44 chr9 36622453 36622746 -81239881 - L1M4c LINE L1 -6040 606 294 365 315 62 22 chr9 36623552 36623730 -81238897 - MER5A DNA MER1_type -3 186 2 183 80 0 0 chr9 36625363 36625388 -81237239 + (TTAGGG)n Simple_repeat Simple_repeat 4 28 0 1689 163 0 63 chr9 36625643 36626022 -81236605 - AluJb SINE Alu 0 312 1 216 183 0 67 chr9 36626335 36626395 -81236232 + (TTGGGG)n Simple_repeat Simple_repeat 5 60 0 2115 130 0 23 chr9 36628145 36628452 -81234175 - AluSx SINE Alu -12 300 1 2644 21 0 3 chr9 36629276 36629590 -81233037 + AluYb8 SINE Alu 1 313 0 1649 286 87 28 chr9 36630190 36630513 -81232114 + L2 LINE L2 1479 1781 -1533 306 0 0 0 chr9 36630513 36630547 -81232080 + (TC)n Simple_repeat Simple_repeat 1 34 0 2154 108 14 0 chr9 36630547 36630824 -81231803 - AluSq SINE Alu -32 281 1 1649 286 87 28 chr9 36630824 36631187 -81231440 + L2 LINE L2 1780 2207 -1107 651 263 147 71 chr9 36631233 36631614 -81231013 - L2 LINE L2 -616 2698 2289 303 298 114 9 chr9 36631627 36631741 -81230886 + L2 LINE L2 3138 3263 -9 200 278 69 28 chr9 36631880 36631952 -81230675 - L2 LINE L2 -8 3305 3231 261 296 93 43 chr9 36637362 36637501 -81225126 - MIR SINE MIR -60 202 60 237 215 65 86 chr9 36639368 36639461 -81223166 + MER102b DNA MER1_type 234 324 -17 6752 96 13 42 chr9 36640249 36640959 -81221668 - L1MA3 LINE L1 0 6305 5646 1897 138 3 46 chr9 36640959 36641263 -81221364 - AluJb SINE Alu -8 304 14 6752 96 13 42 chr9 36641263 36641844 -81220783 - L1MA3 LINE L1 -659 5646 5050 587 325 72 11 chr9 36641983 36642359 -81220268 - L1MC/D LINE L1 -1987 5821 5423 1658 177 3 17 chr9 36642618 36642917 -81219710 - AluJo SINE Alu -17 295 1 941 300 55 39 chr9 36643179 36643686 -81218941 + L1MCc LINE L1 73 587 -5836 1279 210 207 7 chr9 36643832 36644237 -81218390 + L1MCc LINE L1 827 1312 -5111 2495 90 0 3 chr9 36644238 36644549 -81218078 - AluSg SINE Alu 0 310 1 244 161 0 36 chr9 36644723 36644779 -81217848 + Alu SINE Alu 248 301 0 1692 256 45 67 chr9 36644779 36645276 -81217351 + L1MCc LINE L1 1380 1853 -5088 1917 156 10 3 chr9 36645276 36645565 -81217062 - AluJb SINE Alu -21 291 1 1692 256 45 67 chr9 36645565 36645904 -81216723 + L1MCc LINE L1 1853 2198 -4743 3437 167 18 14 chr9 36645982 36646640 -81215987 - L1MB5 LINE L1 0 6174 5514 727 260 144 63 chr9 36646715 36647257 -81215370 + MLT1G1 LTR MaLR 1 586 -9 2342 99 13 0 chr9 36647300 36647604 -81215023 - AluY SINE Alu -3 308 1 461 282 19 72 chr9 36647618 36647880 -81214747 + MLT1L LTR MaLR 193 440 -175 820 272 61 3 chr9 36648123 36648436 -81214191 + L1MC4a LINE L1 5385 5715 -2093 4176 108 175 111 chr9 36648436 36649673 -81212954 - pTR5 LTR ERV1 -2 2436 829 428 217 89 2 chr9 36649673 36649811 -81212816 + L1MC4a LINE L1 5707 5824 -297 2295 126 0 0 chr9 36649835 36650144 -81212483 - AluSq SINE Alu -4 309 1 230 176 0 0 chr9 36650207 36650241 -81212386 - MLT1F LTR MaLR -506 36 3 2502 90 3 0 chr9 36650310 36650620 -81212007 - AluSp SINE Alu -2 311 1 21 0 0 0 chr9 36651534 36651555 -81211072 + AT_rich Low_complexity Low_complexity 1 21 0 840 144 0 0 chr9 36651555 36651687 -81210940 - FLAM_C SINE Alu 0 133 2 764 156 64 0 chr9 36651846 36651987 -81210640 + MER58A DNA MER1_type 43 192 -32 1812 201 47 13 chr9 36652724 36653107 -81209520 - MSTD LTR MaLR 0 396 1 444 111 0 0 chr9 36654462 36654525 -81208102 + MER41A LTR ERV1 492 554 0 275 265 235 0 chr9 36655101 36655203 -81207424 + MIR3 SINE MIR 43 168 -40 1935 117 8 0 chr9 36655228 36655494 -81207133 + AluSx SINE Alu 31 298 -14 2205 98 3 35 chr9 36655657 36655972 -81206655 - AluSc SINE Alu -4 305 1 224 170 19 0 chr9 36656038 36656091 -81206536 + GA-rich Low_complexity Low_complexity 1 54 0 387 229 68 42 chr9 36656258 36656376 -81206251 + L2 LINE L2 3191 3311 -2 415 256 39 64 chr9 36658505 36658661 -81203966 - L2 LINE L2 -633 2681 2530 1928 150 13 20 chr9 36659969 36660269 -81202358 + AluJo SINE Alu 1 298 -14 685 161 140 0 chr9 36661669 36661812 -81200815 - MER5B DNA MER1_type -15 163 1 241 217 24 36 chr9 36662118 36662201 -81200426 + G-rich Low_complexity Low_complexity 6 87 0 269 315 7 0 chr9 36663175 36663318 -81199309 + (TG)n Simple_repeat Simple_repeat 1 144 0 213 94 0 0 chr9 36664390 36664422 -81198205 + (TCCCC)n Simple_repeat Simple_repeat 1 32 0 261 57 0 0 chr9 36664953 36664988 -81197639 + (TG)n Simple_repeat Simple_repeat 1 35 0 1216 295 45 19 chr9 36665791 36666005 -81196622 - L2 LINE L2 -8 3305 3098 2227 91 30 14 chr9 36666005 36666301 -81196326 - AluSx SINE Alu -11 301 1 1216 295 45 19 chr9 36666301 36666667 -81195960 - L2 LINE L2 -215 3098 2703 1891 166 3 16 chr9 36667998 36668312 -81194315 - AluJo SINE Alu -2 310 1 2348 93 0 0 chr9 36668902 36669193 -81193434 - AluSg SINE Alu -19 291 1 418 284 226 24 chr9 36669344 36669552 -81193075 - MIR SINE MIR -1 261 12 229 268 0 18 chr9 36672177 36672233 -81190394 + (TTGGGG)n Simple_repeat Simple_repeat 1 55 0 222 91 0 0 chr9 36675355 36675388 -81187239 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 454 182 11 11 chr9 36676546 36676634 -81185993 - L2 LINE L2 0 3272 3185 2371 65 0 0 chr9 36676636 36676936 -81185691 + AluSg1 SINE Alu 1 300 0 4656 83 4 82 chr9 36678536 36679256 -81183371 + MER4A LTR ERV1 1 664 0 1641 251 72 81 chr9 36679718 36680410 -81182217 + MER21B LTR ERV1 29 714 -149 2140 177 112 16 chr9 36681234 36681664 -81180963 - MER70A LTR ERVL 0 472 2 423 0 0 0 chr9 36681778 36681825 -81180802 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 213 295 25 25 chr9 36681846 36681968 -81180659 + (TTCA)n Simple_repeat Simple_repeat 3 124 0 275 216 193 11 chr9 36681984 36682072 -81180555 - MIR SINE MIR -2 260 157 262 343 66 40 chr9 36682199 36682397 -81180230 + MLT1K LTR MaLR 172 374 -214 2283 135 71 6 chr9 36682397 36682761 -81179866 - MSTC LTR MaLR 0 428 41 915 156 0 54 chr9 36682761 36682947 -81179680 - FRAM SINE Alu 0 176 1 438 57 0 0 chr9 36682949 36683002 -81179625 - MSTC LTR MaLR -375 53 1 1838 148 7 0 chr9 36683048 36683338 -81179289 + AluSx SINE Alu 5 296 -16 351 263 12 81 chr9 36683363 36683429 -81179198 + MLT1K LTR MaLR 436 505 -83 1411 189 40 3 chr9 36683429 36683594 -81179033 - AluSx SINE Alu 0 312 130 2351 74 0 0 chr9 36683594 36683891 -81178736 - AluY SINE Alu -14 297 1 1411 189 40 3 chr9 36683891 36684026 -81178601 - AluSx SINE Alu -182 130 1 351 263 12 81 chr9 36684026 36684119 -81178508 + MLT1K LTR MaLR 505 584 -4 377 252 69 30 chr9 36684128 36684272 -81178355 - MIR SINE MIR -62 146 7 1337 179 14 0 chr9 36684382 36684600 -81178027 - MER58A DNA MER1_type 0 224 4 209 250 0 0 chr9 36684713 36684773 -81177854 + (TG)n Simple_repeat Simple_repeat 2 61 0 1779 139 33 3 chr9 36684825 36685127 -81177500 - AluJb SINE Alu 0 312 2 320 241 209 37 chr9 36685820 36686007 -81176620 - L2 LINE L2 -213 3059 2841 1840 130 4 0 chr9 36686212 36686489 -81176138 + AluJb SINE Alu 1 278 -34 1085 283 88 58 chr9 36686509 36686582 -81176045 + L2 LINE L2 2254 2323 -991 2552 166 17 0 chr9 36686582 36687003 -81175624 - MSTA LTR MaLR 0 428 1 1085 283 88 58 chr9 36687003 36687360 -81175267 + L2 LINE L2 2323 2711 -603 2418 62 0 7 chr9 36687360 36687668 -81174959 - AluY SINE Alu -5 306 1 1085 283 88 58 chr9 36687668 36687859 -81174768 + L2 LINE L2 2711 2895 -419 3126 50 20 88 chr9 36687889 36688302 -81174325 + MLT2A1 LTR ERVL 3 442 -2 2007 104 24 7 chr9 36688302 36688599 -81174028 - AluSq SINE Alu -11 302 1 2144 110 3 0 chr9 36688600 36688900 -81173727 - AluSx SINE Alu -11 301 1 3126 50 20 88 chr9 36688900 36688941 -81173686 + MLT2A1 LTR ERVL 386 428 -16 520 267 144 7 chr9 36688990 36689136 -81173491 + LTR67 LTR ERVL 96 261 -296 335 228 13 0 chr9 36689156 36689235 -81173392 + HERVL LTR ERVL 3122 3201 -2453 429 361 23 0 chr9 36689235 36689454 -81173173 + HERVL LTR ERVL 3513 3736 -1918 1858 72 0 0 chr9 36689455 36689690 -81172937 + AluSc SINE Alu 51 285 -24 838 193 81 0 chr9 36689690 36689851 -81172776 + MLT1E1 LTR MaLR 339 512 -142 25 0 0 0 chr9 36689855 36689880 -81172747 + AT_rich Low_complexity Low_complexity 1 25 0 847 217 0 0 chr9 36689906 36690063 -81172564 + MLT1E1 LTR MaLR 498 654 0 2192 104 3 0 chr9 36690064 36690371 -81172256 + AluSx SINE Alu 1 308 -4 2675 26 0 0 chr9 36690377 36690688 -81171939 + AluYa5 SINE Alu 1 311 0 718 276 39 78 chr9 36690947 36691280 -81171347 + MLT1I LTR MaLR 87 406 -3 561 130 104 9 chr9 36691391 36691499 -81171128 + MLT1A2 LTR MaLR 1 122 -268 2234 113 0 0 chr9 36691499 36691810 -81170817 + AluSx SINE Alu 1 311 -1 723 108 14 95 chr9 36692351 36692381 -81170246 + MLT1A2 LTR MaLR 237 268 -106 1465 146 51 61 chr9 36692381 36692675 -81169952 - AluJb SINE Alu -21 291 1 723 108 14 95 chr9 36692675 36692792 -81169835 + MLT1A2 LTR MaLR 268 372 -2 515 287 99 63 chr9 36693081 36693303 -81169324 + LTR67 LTR ERVL 87 316 -241 2473 306 19 24 chr9 36693303 36693445 -81169182 - MER115 DNA AcHobo 0 693 552 2316 106 0 0 chr9 36693445 36693756 -81168871 - AluSx SINE Alu -1 311 1 2473 306 19 24 chr9 36693756 36694310 -81168317 - MER115 DNA AcHobo -141 552 1 443 215 99 35 chr9 36694351 36694523 -81168104 + LTR67 LTR ERVL 367 549 -8 446 306 16 8 chr9 36694531 36694655 -81167972 + L2 LINE L2 3163 3287 -26 235 200 73 0 chr9 36694800 36694855 -81167772 - MER91C DNA MER1_type -50 90 32 526 324 78 0 chr9 36695990 36696194 -81166433 + MIR SINE MIR 37 256 -6 632 271 26 7 chr9 36696284 36696439 -81166188 + MIR SINE MIR 4 161 -101 366 225 43 103 chr9 36697791 36697956 -81164671 - MIR3 SINE MIR -28 180 21 235 243 16 0 chr9 36698244 36698378 -81164249 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 684 297 125 30 chr9 36699187 36699490 -81163137 - L2 LINE L2 0 3272 2941 572 51 64 0 chr9 36699903 36699981 -81162646 - HY3 scRNA scRNA -1 100 18 405 0 0 0 chr9 36700820 36700865 -81161762 + (TG)n Simple_repeat Simple_repeat 2 46 0 653 265 87 55 chr9 36702652 36702905 -81159722 - MIR SINE MIR 0 262 2 568 310 86 1 chr9 36702939 36703156 -81159471 + MIR SINE MIR 8 241 -21 1989 129 0 43 chr9 36703170 36703496 -81159131 - AluSx SINE Alu 0 312 1 285 309 0 0 chr9 36703497 36703578 -81159049 + (TCCA)n Simple_repeat Simple_repeat 4 84 0 799 244 68 8 chr9 36703582 36703816 -81158811 + LTR33 LTR ERVL 2 249 -272 863 265 5 0 chr9 36703820 36704005 -81158622 + MER5A DNA MER1_type 1 186 -3 484 209 93 7 chr9 36704016 36704155 -81158472 + L1M4c LINE L1 1230 1380 -5004 343 250 0 10 chr9 36704169 36704273 -81158354 - L1M4c LINE L1 -4563 1821 1719 265 239 30 0 chr9 36704296 36704363 -81158264 - L1M4c LINE L1 -4648 1736 1668 275 73 0 5 chr9 36704363 36704453 -81158174 + AluSg/x SINE Alu 70 195 -105 1890 129 0 14 chr9 36704555 36704732 -81157895 - AluSx SINE Alu -2 310 137 2248 88 0 7 chr9 36704732 36705028 -81157599 - AluSq SINE Alu -19 294 1 1890 129 0 14 chr9 36705028 36705144 -81157483 - AluSx SINE Alu -175 137 21 528 259 25 12 chr9 36705153 36705315 -81157312 + LTR33 LTR ERVL 323 486 -35 4435 167 18 62 chr9 36705316 36706196 -81156431 + MER21B LTR ERV1 1 841 -22 283 159 0 0 chr9 36706215 36706259 -81156368 + LTR33 LTR ERVL 478 521 0 2090 119 3 0 chr9 36706601 36706903 -81155724 + AluSx SINE Alu 1 303 -9 365 310 35 35 chr9 36707045 36707190 -81155437 + ERVL LTR ERVL 542 686 -4968 345 173 156 150 chr9 36707609 36707722 -81154905 - MER5A DNA MER1_type -6 183 67 2199 102 0 0 chr9 36707722 36708015 -81154612 - AluSx SINE Alu -19 293 1 345 173 156 150 chr9 36708015 36708074 -81154553 - MER5A DNA MER1_type -122 67 10 824 336 80 21 chr9 36708078 36708682 -81153945 + ERVL LTR ERVL 1217 1905 -3851 1831 115 62 3 chr9 36708887 36709175 -81153452 - AluSp SINE Alu -8 305 1 819 280 129 19 chr9 36709195 36709566 -81153061 + ERVL LTR ERVL 3097 3508 -2146 787 251 35 0 chr9 36709660 36709863 -81152764 + ERVL LTR ERVL 3684 3893 -1871 486 226 0 10 chr9 36709873 36709975 -81152652 + LTR33 LTR ERVL 421 521 0 2593 222 142 10 chr9 36710114 36711220 -81151407 - L2 LINE L2 -3 3310 2078 900 198 0 0 chr9 36713038 36713215 -81149412 + AluJo SINE Alu 116 292 -20 2094 101 21 0 chr9 36713576 36713864 -81148763 - AluSx SINE Alu -18 294 1 500 75 0 0 chr9 36714050 36714117 -81148510 + MER41B LTR ERV1 481 547 -88 827 197 21 94 chr9 36714178 36714412 -81148215 - AluJb SINE Alu -94 218 2 1473 174 34 27 chr9 36714432 36714725 -81147902 - AluJo SINE Alu -6 296 2 195 42 0 0 chr9 36714874 36714898 -81147729 + (TG)n Simple_repeat Simple_repeat 2 25 0 1994 135 3 6 chr9 36714947 36715259 -81147368 + AluJo SINE Alu 1 311 -1 22 0 0 0 chr9 36715697 36715719 -81146908 + AT_rich Low_complexity Low_complexity 1 22 0 1305 156 156 12 chr9 36715719 36715976 -81146651 - AluJb SINE Alu -8 294 1 270 314 47 0 chr9 36716009 36716095 -81146532 - HAL1 LINE L1 -2417 90 1 785 144 0 0 chr9 36716177 36716295 -81146332 + FLAM_C SINE Alu 1 118 -15 21 36 0 0 chr9 36716295 36716323 -81146304 + AT_rich Low_complexity Low_complexity 1 28 0 325 264 118 18 chr9 36716441 36716551 -81146076 + HAL1 LINE L1 2027 2147 -360 474 228 137 25 chr9 36716586 36716827 -81145800 + HAL1 LINE L1 2118 2385 -122 837 158 57 0 chr9 36717235 36717393 -81145234 + FRAM SINE Alu 1 160 -16 2209 76 7 13 chr9 36718123 36718425 -81144202 - AluSq SINE Alu -13 300 1 307 314 50 25 chr9 36718798 36718919 -81143708 + L1ME3A LINE L1 4 127 -5943 790 294 35 0 chr9 36719339 36719649 -81142978 + L1ME3A LINE L1 3591 3911 -2169 1067 163 53 10 chr9 36719676 36719885 -81142742 + LTR52 LTR ERVL 202 419 -2 2822 234 64 35 chr9 36719888 36720137 -81142490 + L1ME3A LINE L1 4963 5203 -901 1472 197 3 30 chr9 36720137 36720442 -81142185 + AluJo SINE Alu 2 298 -14 2822 234 64 35 chr9 36720442 36721281 -81141346 + L1ME3A LINE L1 5203 6087 -17 1382 96 0 0 chr9 36721282 36721460 -81141167 + MSTA LTR MaLR 2 179 -249 15738 135 42 58 chr9 36721460 36722461 -81140166 + L1MA3 LINE L1 1677 2692 -5032 765 164 0 0 chr9 36722461 36722577 -81140050 + FLAM_C SINE Alu 1 116 -27 15738 135 42 58 chr9 36722577 36722616 -81140011 + L1MA3 LINE L1 2692 2730 -4994 1557 38 0 0 chr9 36722616 36722799 -81139828 - L1PA8 LINE L1 0 6172 5990 15738 135 42 58 chr9 36722799 36723277 -81139350 + L1MA3 LINE L1 2730 3214 -4510 1456 147 22 0 chr9 36723277 36723553 -81139074 + AluSx SINE Alu 55 335 0 15738 135 42 58 chr9 36723553 36724093 -81138534 + L1MA3 LINE L1 3214 3761 -3963 2130 118 0 0 chr9 36724093 36724397 -81138230 + AluSq SINE Alu 1 304 -9 15738 135 42 58 chr9 36724397 36728371 -81134256 + L1MA3 LINE L1 3761 7724 0 1394 95 68 16 chr9 36728373 36728625 -81134002 - L1M2 LINE L1 -768 5529 5265 26 30 0 0 chr9 36728627 36728660 -81133967 + AT_rich Low_complexity Low_complexity 1 33 0 932 198 0 12 chr9 36728660 36728822 -81133805 - FRAM SINE Alu -16 160 1 4760 160 30 24 chr9 36728823 36729114 -81133513 - L1 LINE L1 -874 5914 5626 2016 132 17 0 chr9 36729114 36729409 -81133218 - AluSp SINE Alu -13 300 1 4760 160 30 24 chr9 36729409 36729909 -81132718 - L1 LINE L1 -1162 5626 5112 1982 125 7 0 chr9 36729909 36730213 -81132414 - AluSg SINE Alu 0 306 1 4760 160 30 24 chr9 36730213 36730489 -81132138 - L1 LINE L1 -1676 5112 4839 7656 208 28 18 chr9 36730490 36732136 -81130491 - L1 LINE L1 -5120 1669 7 1310 218 27 7 chr9 36732292 36732586 -81130041 + LTR53 LTR ERVL 209 508 -11 1937 145 0 0 chr9 36733720 36734016 -81128611 + AluJb SINE Alu 1 296 -16 255 208 19 0 chr9 36734027 36734080 -81128547 - MER5A DNA MER1_type 0 189 136 1091 181 48 20 chr9 36734081 36734329 -81128298 - MER45B DNA AcHobo 0 1040 786 542 247 140 6 chr9 36734352 36734530 -81128097 - L2 LINE L2 0 3313 3112 42778 34 0 1 chr9 36734709 36740865 -81121762 - L1PA3 LINE L1 -3 6152 4 355 200 0 0 chr9 36740865 36740940 -81121687 - MER45B DNA AcHobo -242 798 724 952 182 111 0 chr9 36740985 36741183 -81121444 - MER45B DNA AcHobo -711 329 110 569 272 80 42 chr9 36741410 36741623 -81121004 + MIR SINE MIR 7 227 -35 972 285 85 44 chr9 36741775 36741908 -81120719 + L1MC3 LINE L1 4151 4277 -2114 249 33 0 0 chr9 36741908 36741938 -81120689 + (GA)n Simple_repeat Simple_repeat 1 30 0 972 285 85 44 chr9 36741938 36742137 -81120490 + L1MC3 LINE L1 4277 4466 -1925 2159 95 7 20 chr9 36742137 36742431 -81120196 - AluSx SINE Alu -22 290 1 972 285 85 44 chr9 36742431 36743533 -81119094 + L1MC3 LINE L1 4466 5643 -748 284 192 0 0 chr9 36743538 36743590 -81119037 + LTR16B LTR ERVL 413 464 0 225 239 22 22 chr9 36743590 36743682 -81118945 + L1MC3 LINE L1 5913 6004 -1804 2034 149 3 0 chr9 36743842 36744144 -81118483 + AluSq SINE Alu 1 303 -10 1919 167 39 6 chr9 36744160 36744496 -81118131 - MER7A DNA MER2_type 0 346 2 430 249 9 9 chr9 36744496 36744724 -81117903 - L1MD2 LINE L1 -29 6330 6052 478 269 60 10 chr9 36745222 36745423 -81117204 + L1ME LINE L1 5533 5743 -378 3177 149 20 37 chr9 36745697 36746002 -81116625 + L1MC3 LINE L1 6428 6737 -1048 2453 74 3 0 chr9 36746002 36746300 -81116327 - AluSp SINE Alu -14 299 1 3177 149 20 37 chr9 36746300 36746639 -81115988 + L1MC3 LINE L1 6737 7061 -724 2173 176 5 0 chr9 36746655 36747053 -81115574 + L1MC3 LINE L1 7290 7689 -96 4201 183 31 24 chr9 36747053 36747500 -81115127 + L1MB3 LINE L1 4934 5376 -807 2035 136 3 7 chr9 36747500 36747802 -81114825 + AluSq SINE Alu 1 301 -12 4201 183 31 24 chr9 36747802 36748581 -81114046 + L1MB3 LINE L1 5376 6180 -3 419 154 55 0 chr9 36748590 36748681 -81113946 + L1MC3 LINE L1 7690 7785 0 2529 176 32 11 chr9 36748704 36749237 -81113390 + L1MB8 LINE L1 5586 6129 -49 5488 212 87 28 chr9 36749326 36751202 -81111425 - L1M2 LINE L1 -4709 2140 17 3835 218 39 5 chr9 36751201 36752335 -81110292 + L1MB4 LINE L1 3469 4640 -2925 * 3902 184 50 41 chr9 36752407 36752731 -81109896 + L1MB4 LINE L1 5945 6265 -1334 2253 99 0 0 chr9 36752731 36753036 -81109591 - AluSq SINE Alu 0 305 1 3902 184 50 41 chr9 36753036 36753297 -81109330 + L1MB4 LINE L1 6265 6522 -1077 2088 121 47 0 chr9 36753297 36753595 -81109032 - AluJb SINE Alu 0 312 1 3902 184 50 41 chr9 36753595 36754642 -81107985 + L1MB4 LINE L1 6522 7597 -2 428 111 14 0 chr9 36754658 36754730 -81107897 + L1MB8 LINE L1 6101 6173 -5 215 273 73 0 chr9 36756269 36756324 -81106303 - L3 LINE CR1 -1086 491 433 384 110 82 0 chr9 36756350 36756423 -81106204 + MER110A LTR ERV1 1 79 -389 552 194 101 73 chr9 36756426 36756674 -81105953 + MER110A LTR ERV1 214 468 0 1328 179 12 128 chr9 36758031 36758444 -81104183 - MLT1A1 LTR MaLR 0 365 1 388 165 13 0 chr9 36758562 36758641 -81103986 + MLT1D LTR MaLR 426 505 0 290 267 11 44 chr9 36758995 36759085 -81103542 + L2 LINE L2 3184 3270 -43 26 0 0 0 chr9 36759265 36759291 -81103336 + AT_rich Low_complexity Low_complexity 1 26 0 31 0 0 0 chr9 36760318 36760349 -81102278 + AT_rich Low_complexity Low_complexity 1 31 0 290 228 119 30 chr9 36760654 36760755 -81101872 + MER5A DNA MER1_type 79 188 -1 257 165 78 68 chr9 36760939 36761042 -81101585 - HAL1b LINE L1 0 1348 1245 1941 145 0 17 chr9 36761042 36761353 -81101274 - AluJo SINE Alu 0 306 1 3428 115 18 40 chr9 36761697 36762296 -81100331 + LTR60 LTR ERV1 1 586 0 2502 132 13 66 chr9 36762716 36762852 -81099775 - MER65A LTR ERV1 0 445 303 1869 164 3 10 chr9 36762852 36763157 -81099470 - AluJo SINE Alu -9 303 1 2502 132 13 66 chr9 36763157 36763490 -81099137 - MER65A LTR ERV1 -142 303 1 2621 275 126 56 chr9 36763572 36765134 -81097493 - L2 LINE L2 -33 3280 1618 2387 76 3 13 chr9 36765435 36765739 -81096888 + AluSp SINE Alu 1 301 -12 36 87 0 0 chr9 36766074 36766166 -81096461 + AT_rich Low_complexity Low_complexity 1 92 0 360 365 96 30 chr9 36766457 36766758 -81095869 + L1ME1 LINE L1 16 336 -6204 206 130 0 65 chr9 36766793 36766839 -81095788 + (TTTTC)n Simple_repeat Simple_repeat 2 44 0 1976 252 50 21 chr9 36767273 36768197 -81094430 + L1ME1 LINE L1 910 1820 -4720 632 168 44 0 chr9 36768203 36768316 -81094311 + AluJb SINE Alu 191 308 -4 672 208 84 69 chr9 36768316 36768663 -81093964 + L1ME1 LINE L1 1814 2165 -4375 * 1662 231 93 36 chr9 36768661 36768761 -81093866 + L1ME1 LINE L1 5074 5167 -1393 1659 190 19 16 chr9 36768761 36769072 -81093555 + AluJb SINE Alu 1 312 0 1662 231 93 36 chr9 36769072 36770121 -81092506 + L1ME1 LINE L1 5167 6289 -271 3100 157 50 48 chr9 36770125 36770929 -81091698 - LTR1 LTR ERV1 0 785 18 835 255 4 20 chr9 36770999 36771250 -81091377 + L1ME1 LINE L1 6295 6541 -19 5359 122 25 5 chr9 36771261 36772152 -81090475 - L1PA16 LINE L1 -4 6162 5254 562 283 85 9 chr9 36772284 36772507 -81090120 + MIR SINE MIR 22 261 -1 1201 194 9 0 chr9 36772965 36773192 -81089435 + L1PB4 LINE L1 5928 6156 0 6736 48 31 12 chr9 36773434 36774528 -81088099 + L1PA8 LINE L1 4711 5830 -342 2152 74 0 0 chr9 36774528 36774786 -81087841 + AluY SINE Alu 37 294 -17 6736 48 31 12 chr9 36774786 36775127 -81087500 + L1PA8 LINE L1 5830 6163 -9 437 254 52 66 chr9 36775206 36775419 -81087208 + MLT1K LTR MaLR 23 232 -356 352 278 128 75 chr9 36776995 36777261 -81085366 + MLT1K LTR MaLR 279 558 -30 409 286 8 30 chr9 36777608 36777741 -81084886 - MIR SINE MIR -110 152 23 4742 180 29 34 chr9 36777750 36779468 -81083159 - L1MB8 LINE L1 -12 6166 4441 213 39 0 0 chr9 36779468 36779494 -81083133 + (TTG)n Simple_repeat Simple_repeat 2 27 0 4742 180 29 34 chr9 36779494 36779516 -81083111 - L1MB8 LINE L1 -1737 4441 4420 2170 125 0 0 chr9 36779516 36779805 -81082822 - AluSx SINE Alu -23 289 1 4742 180 29 34 chr9 36779805 36780301 -81082326 - L1MB8 LINE L1 -1758 4420 3940 22 0 0 0 chr9 36780531 36780553 -81082074 + AT_rich Low_complexity Low_complexity 1 22 0 545 271 91 20 chr9 36781131 36781330 -81081297 + MIR SINE MIR 2 214 -48 907 178 7 0 chr9 36781362 36781508 -81081119 + FRAM SINE Alu 1 146 -30 1240 210 9 103 chr9 36781537 36781906 -81080721 - MLT1A1 LTR MaLR 0 365 34 1468 29 6 0 chr9 36781907 36782116 -81080511 + L1PA3 LINE L1 5965 6174 0 31 0 0 0 chr9 36782291 36782322 -81080305 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr9 36782971 36782994 -81079633 + GC_rich Low_complexity Low_complexity 1 23 0 191 61 30 0 chr9 36783045 36783078 -81079549 + (CCG)n Simple_repeat Simple_repeat 2 35 0 301 254 225 14 chr9 36784080 36784218 -81078409 - MIR SINE MIR -15 247 81 1881 169 108 11 chr9 36784315 36784676 -81077951 + MSTD LTR MaLR 1 396 0 2074 154 38 47 chr9 36784713 36785136 -81077491 + L1M3 LINE L1 5008 5424 -756 656 197 7 36 chr9 36785136 36785273 -81077354 + FLAM_A SINE Alu 1 133 0 2074 154 38 47 chr9 36785273 36785512 -81077115 + L1M3 LINE L1 5424 5664 -516 2345 211 87 11 chr9 36786387 36786937 -81075690 - MLT1E LTR MaLR 0 593 2 1735 219 44 22 chr9 36787380 36787787 -81074840 + LTR40c LTR ERVL 47 462 -3 2095 105 39 0 chr9 36787792 36788077 -81074550 - AluSq SINE Alu -16 297 2 2374 94 0 0 chr9 36788359 36788668 -81073959 - AluY SINE Alu -2 309 1 238 45 45 23 chr9 36789123 36789167 -81073460 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 1966 172 64 3 chr9 36789461 36789804 -81072823 - MLT1A1 LTR MaLR -1 364 1 360 123 68 0 chr9 36790133 36790206 -81072421 - L1MA4 LINE L1 -125 6175 6098 984 197 282 36 chr9 36790207 36790298 -81072329 - L1M4 LINE L1 -743 5504 5437 1818 152 0 0 chr9 36790298 36790562 -81072065 - AluJo SINE Alu -19 293 30 984 197 282 36 chr9 36790562 36791004 -81071623 - L1M4 LINE L1 -810 5437 4835 4251 249 52 47 chr9 36791006 36791726 -81070901 - L1M4 LINE L1 -1752 4463 3748 661 156 92 0 chr9 36791726 36791835 -81070792 + AluJb SINE Alu 3 121 -191 4251 249 52 47 chr9 36791835 36793177 -81069450 - L1M4 LINE L1 -2467 3748 2355 218 95 24 0 chr9 36793177 36793219 -81069408 + (TA)n Simple_repeat Simple_repeat 1 43 0 4251 249 52 47 chr9 36793219 36793273 -81069354 - L1M4 LINE L1 -3860 2355 2303 * 6025 92 5 9 chr9 36793267 36794112 -81068515 - L1PA15 LINE L1 -2 6163 5323 1602 239 99 35 chr9 36794112 36794417 -81068210 - L1M4 LINE L1 -4039 2357 2073 1804 250 105 51 chr9 36794417 36795046 -81067581 + MLT2F LTR ERVL 1 663 0 1602 239 99 35 chr9 36795046 36795454 -81067173 - L1M4 LINE L1 -4323 2073 1598 775 178 115 0 chr9 36795431 36795605 -81067022 - L1MB7 LINE L1 0 6253 6060 * 255 323 43 30 chr9 36795693 36795857 -81066770 - MER5A DNA MER1_type 0 189 24 2935 13 0 0 chr9 36795961 36796277 -81066350 + AluYb8 SINE Alu 1 316 -2 201 220 0 51 chr9 36798017 36798076 -81064551 + (TTGGGG)n Simple_repeat Simple_repeat 5 60 0 333 22 152 0 chr9 36798786 36798832 -81063795 + MADE1 DNA Mariner 1 53 -27 1807 277 80 4 chr9 36801312 36801990 -81060637 + L2 LINE L2 1519 2247 -1067 916 216 117 87 chr9 36802038 36802450 -81060177 - L2 LINE L2 -616 2698 2275 231 342 140 18 chr9 36802448 36802562 -81060065 + L2 LINE L2 3138 3265 -7 * 292 303 28 9 chr9 36803000 36803109 -81059518 - L2 LINE L2 -1000 2314 2204 289 214 34 22 chr9 36803111 36803200 -81059427 - MIR SINE MIR -96 166 77 189 298 89 16 chr9 36810356 36810480 -81052147 - MIR SINE MIR -70 192 60 634 189 0 14 chr9 36813460 36813608 -81049019 + CT-rich Low_complexity Low_complexity 3 148 0 801 258 99 44 chr9 36814112 36814546 -81048081 - L2 LINE L2 -1239 2075 1618 2403 76 3 13 chr9 36814846 36815149 -81047478 + AluSp SINE Alu 1 300 -13 461 265 11 3 chr9 36815747 36815877 -81046750 - MER5A DNA MER1_type -48 141 1 588 207 0 0 chr9 36817344 36817455 -81045172 - L1M3 LINE L1 -429 5751 5641 3147 221 33 40 chr9 36817515 36817572 -81045055 - L1ME1 LINE L1 -5 6161 6105 2189 115 3 0 chr9 36817572 36817868 -81044759 + AluSq SINE Alu 1 297 -16 3147 221 33 40 chr9 36817868 36818382 -81044245 - L1ME1 LINE L1 -61 6105 5595 1686 181 10 67 chr9 36818382 36818768 -81043859 + MLT1A1 LTR MaLR 1 364 -1 3147 221 33 40 chr9 36818768 36819053 -81043574 - L1ME1 LINE L1 -571 5595 5310 805 210 176 0 chr9 36819385 36819623 -81043004 - L1ME1 LINE L1 -1286 4860 4581 436 154 0 13 chr9 36819625 36819703 -81042924 - MLT1E LTR MaLR 0 593 517 25 0 0 0 chr9 36819713 36819738 -81042889 + AT_rich Low_complexity Low_complexity 1 25 0 272 159 0 0 chr9 36819738 36819782 -81042845 - FLAM_A SINE Alu -4 129 86 6060 185 18 35 chr9 36819882 36821501 -81041126 - L1M4c LINE L1 -2660 4905 3313 45271 36 2 1 chr9 36821519 36827665 -81034962 - L1PA3 LINE L1 0 6155 2 1841 236 33 43 chr9 36827769 36827873 -81034754 - L1M4c LINE L1 -4411 3154 3050 2459 131 64 29 chr9 36827873 36828292 -81034335 + Tigger2a DNA MER2_type 1 434 0 1841 236 33 43 chr9 36828292 36828715 -81033912 - L1M4c LINE L1 -4515 3050 2631 472 215 131 0 chr9 36828715 36828822 -81033805 - FLAM_A SINE Alu -12 121 1 1841 236 33 43 chr9 36828822 36828902 -81033725 - L1M4c LINE L1 -4934 2631 2552 11430 187 16 25 chr9 36828917 36829457 -81033170 - L1P3 LINE L1 -2039 4422 3879 2830 20 0 0 chr9 36829457 36829761 -81032866 + AluYa5 SINE Alu 1 304 -7 11430 187 16 25 chr9 36829761 36833657 -81028970 - L1P3 LINE L1 -2582 3879 8 2017 221 64 80 chr9 36833662 36833979 -81028648 - L1M3c LINE L1 -4717 1858 1537 195 42 0 0 chr9 36833979 36834003 -81028624 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 2017 221 64 80 chr9 36834003 36834609 -81028018 - L1M3c LINE L1 -5038 1537 256 802 257 91 48 chr9 36834614 36835031 -81027596 - L1M4c LINE L1 -5412 2155 1721 236 351 50 18 chr9 36835307 36835529 -81027098 - L1M3c LINE L1 -6300 242 14 2234 277 32 17 chr9 36835529 36836237 -81026390 - L1MEc LINE L1 -5642 754 36 376 70 0 53 chr9 36836310 36836367 -81026260 + MADE1 DNA Mariner 27 80 0 189 0 0 0 chr9 36836594 36836615 -81026012 + (TG)n Simple_repeat Simple_repeat 1 21 0 242 304 38 0 chr9 36836689 36836768 -81025859 + L1ME LINE L1 142 223 -5982 247 261 59 25 chr9 36837238 36837357 -81025270 + L1ME LINE L1 628 750 -5646 1358 213 80 1 chr9 36837362 36837751 -81024876 + L1MC4 LINE L1 6761 7216 -592 788 205 119 5 chr9 36837813 36837998 -81024629 - MLT1A1 LTR MaLR 0 365 160 16732 150 60 26 chr9 36838013 36839552 -81023075 + L1M1 LINE L1 400 1886 -5679 333 0 0 0 chr9 36839552 36839589 -81023038 + (GA)n Simple_repeat Simple_repeat 2 38 0 16732 150 60 26 chr9 36839589 36841031 -81021596 + L1M1 LINE L1 1886 3278 -4287 1980 80 0 16 chr9 36841031 36841280 -81021347 + AluSc SINE Alu 1 245 -64 16732 150 60 26 chr9 36841280 36841417 -81021210 + L1M1 LINE L1 3278 3354 -4211 2054 135 3 22 chr9 36841417 36841735 -81020892 + AluSx SINE Alu 1 312 0 16732 150 60 26 chr9 36841735 36841801 -81020826 + L1M1 LINE L1 3354 3416 -4149 1043 231 63 65 chr9 36841802 36842220 -81020407 - MLT1E LTR MaLR -101 492 36 189 229 21 0 chr9 36844447 36844495 -81018132 - L2 LINE L2 -3 3269 3221 5803 83 29 2 chr9 36844885 36845683 -81016944 - L1PA11 LINE L1 -1 6173 5355 2512 134 15 106 chr9 36846172 36846711 -81015916 - L1MC1 LINE L1 0 6333 5844 871 175 28 0 chr9 36846711 36846854 -81015773 - AluJb SINE Alu -21 291 145 234 79 0 26 chr9 36846854 36846892 -81015735 + L1P4 LINE L1 5713 5749 -419 3519 191 57 15 chr9 36846895 36848327 -81014300 - L1MC1 LINE L1 -491 5853 4360 12093 23 7 1 chr9 36848343 36850449 -81012178 - L1PA2 LINE L1 -3 6152 4032 763 62 0 0 chr9 36850449 36850546 -81012081 + L1PA2 LINE L1 3911 4007 -2139 25 0 0 0 chr9 36850925 36850950 -81011677 + AT_rich Low_complexity Low_complexity 1 25 0 2434 112 36 29 chr9 36850950 36851335 -81011292 - L1MA1 LINE L1 -4 6298 5911 529 262 56 60 chr9 36851504 36851737 -81010890 - MER112 DNA MER1_type -8 252 21 405 0 0 0 chr9 36852038 36852083 -81010544 + (CA)n Simple_repeat Simple_repeat 1 45 0 336 24 0 0 chr9 36852082 36852123 -81010504 + (TC)n Simple_repeat Simple_repeat 1 41 0 * 2501 118 16 3 chr9 36852244 36852616 -81010011 + L1MC2 LINE L1 5605 5981 -352 * 4430 135 74 33 chr9 36852609 36852797 -81009830 + L1MB4 LINE L1 5288 5467 -713 195 42 0 0 chr9 36852797 36852821 -81009806 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 4430 135 74 33 chr9 36852821 36853132 -81009495 + L1MB4 LINE L1 5467 5764 -416 2331 104 3 0 chr9 36853132 36853439 -81009188 + AluSx SINE Alu 1 308 -4 4430 135 74 33 chr9 36853439 36853790 -81008837 + L1MB4 LINE L1 5764 6174 -6 341 145 0 16 chr9 36853802 36853864 -81008763 + L1MC2 LINE L1 5968 6028 -316 1415 99 26 0 chr9 36853864 36854055 -81008572 - L1PA7 LINE L1 -1 6153 5958 2051 130 9 22 chr9 36854055 36854376 -81008251 + L1MC2 LINE L1 6015 6333 -11 42240 63 6 4 chr9 36854386 36860517 -81002110 + L1PA5 LINE L1 11 6154 0 3777 265 94 43 chr9 36862181 36862862 -80999765 + L2 LINE L2 1486 2131 -1182 766 87 0 16 chr9 36862862 36862989 -80999638 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 3777 265 94 43 chr9 36862989 36864046 -80998581 + L2 LINE L2 2131 3312 -1 838 308 70 39 chr9 36864163 36864520 -80998107 + L2 LINE L2 2898 3265 -7 197 204 41 20 chr9 36864773 36864822 -80997805 - L3 LINE CR1 -951 626 577 2359 118 0 0 chr9 36869443 36869756 -80992871 + AluSq SINE Alu 1 313 0 294 286 168 31 chr9 36870763 36870957 -80991670 - MIR SINE MIR -18 244 22 2229 107 3 3 chr9 36872998 36873298 -80989329 + AluSx SINE Alu 1 300 -12 788 147 128 39 chr9 36873511 36873718 -80988909 + L1MB4 LINE L1 5980 6179 -1 5701 93 1 0 chr9 36873803 36874535 -80988092 - L1PB1 LINE L1 0 6151 5419 501 281 15 15 chr9 36875945 36876080 -80986547 + MER5A DNA MER1_type 7 141 -48 1475 222 35 86 chr9 36876349 36876441 -80986186 + L1M4 LINE L1 3258 3353 -2793 2030 141 0 0 chr9 36876441 36876725 -80985902 + AluJb SINE Alu 1 284 -28 1475 222 35 86 chr9 36876725 36876784 -80985843 + L1M4 LINE L1 3353 3413 -2733 1147 149 198 71 chr9 36876784 36877107 -80985520 + MLT1A1 LTR MaLR 1 364 -1 1475 222 35 86 chr9 36877107 36877500 -80985127 + L1M4 LINE L1 3413 3775 -2371 739 197 90 34 chr9 36877498 36877732 -80984895 + L1MC5 LINE L1 7347 7593 -368 * 621 121 0 0 chr9 36877759 36877842 -80984785 + AluS SINE Alu 2 84 -229 650 243 56 25 chr9 36877844 36878128 -80984499 + L1MC5 LINE L1 7585 7877 -84 1934 163 0 16 chr9 36878493 36878799 -80983828 + AluJb SINE Alu 3 303 -9 342 239 129 18 chr9 36879102 36879272 -80983355 - MIR SINE MIR -6 256 67 1564 168 8 0 chr9 36879450 36879700 -80982927 + AluJo SINE Alu 41 292 -20 4731 194 3 42 chr9 36879885 36881026 -80981601 - L1 LINE L1 -1576 4570 3371 186 329 62 41 chr9 36881703 36881849 -80980778 - L2 LINE L2 -189 3083 2935 1828 191 12 9 chr9 36882255 36882600 -80980027 - MER4D LTR ERV1 0 903 558 879 103 0 0 chr9 36882672 36882788 -80979839 + AluSg/x SINE Alu 185 300 -10 879 167 86 62 chr9 36882788 36883023 -80979604 + LTR48 LTR ERV1 61 345 -354 357 191 0 16 chr9 36883021 36883084 -80979543 - AluJo SINE Alu -14 288 227 * 858 173 6 26 chr9 36883084 36883240 -80979387 - AluJo SINE Alu -148 164 12 463 216 81 0 chr9 36883250 36883361 -80979266 + LTR48 LTR ERV1 337 456 -331 909 228 39 27 chr9 36883379 36883638 -80978989 + LTR48B LTR ERV1 381 642 -2 2318 94 0 28 chr9 36883947 36884265 -80978362 - AluSg SINE Alu -1 309 1 744 256 97 43 chr9 36884431 36884802 -80977825 - L2 LINE L2 0 3313 2923 233 197 15 30 chr9 36884920 36884962 -80977665 + (CTTAT)n Simple_repeat Simple_repeat 4 45 -23 2271 101 7 7 chr9 36884962 36885270 -80977357 - AluSg SINE Alu -2 308 1 543 246 149 0 chr9 36885273 36885387 -80977240 - FLAM_A SINE Alu -2 131 1 233 197 15 30 chr9 36885387 36885406 -80977221 + (CTTAT)n Simple_repeat Simple_repeat 47 68 0 2443 50 0 20 chr9 36885749 36886051 -80976576 - AluY SINE Alu -15 296 1 212 261 0 0 chr9 36886393 36886439 -80976188 + CT-rich Low_complexity Low_complexity 5 50 0 203 267 0 0 chr9 36886886 36886931 -80975696 + CT-rich Low_complexity Low_complexity 5 49 0 877 120 72 30 chr9 36887037 36887204 -80975423 + L1MA8 LINE L1 6112 6285 -6 1818 185 0 13 chr9 36887438 36887740 -80974887 - AluJo SINE Alu -14 298 1 2310 97 3 3 chr9 36887859 36888168 -80974459 - AluSg1 SINE Alu 0 309 1 366 308 58 55 chr9 36888372 36888664 -80973963 + L1MDa LINE L1 57 349 -6191 229 323 50 10 chr9 36889034 36889133 -80973494 + L1MDa LINE L1 794 896 -5634 1394 246 102 39 chr9 36889243 36889998 -80972629 + L1MDa LINE L1 920 1679 -4861 507 278 71 71 chr9 36889998 36890250 -80972377 + MER110-int LTR ERV1 2213 2464 -2183 574 246 157 26 chr9 36890312 36890747 -80971880 - HAL1 LINE L1 -1843 664 142 371 353 41 63 chr9 36890932 36891201 -80971426 - HAL1b LINE L1 -1059 289 27 1369 147 4 26 chr9 36891391 36891622 -80971005 - AluJb SINE Alu -1 311 86 1673 85 0 5 chr9 36891638 36891850 -80970777 - AluJb SINE Alu -2 310 100 1791 130 77 80 chr9 36892418 36892794 -80969833 + THE1C LTR MaLR 1 375 0 1713 188 102 5 chr9 36892980 36893353 -80969274 + Tigger6a DNA MER2_type 405 813 -270 192 40 0 0 chr9 36893708 36893733 -80968894 + (TCTCC)n Simple_repeat Simple_repeat 5 29 0 1335 144 55 19 chr9 36895232 36895503 -80967124 + Tigger6a DNA MER2_type 803 1083 0 452 158 0 0 chr9 36895666 36895742 -80966885 - L1MC2 LINE L1 -8 6336 6261 2207 119 44 0 chr9 36895787 36896130 -80966497 - L1MA4 LINE L1 -7 6293 5936 5245 109 23 9 chr9 36896136 36896924 -80965703 - L1MA3 LINE L1 -106 6841 6043 4960 150 25 0 chr9 36896923 36897790 -80964837 - L1MA3 LINE L1 -1293 5495 4607 * 764 156 4 110 chr9 36897810 36898068 -80964559 - MER31-int LTR ERV1 -3250 1686 1270 8466 201 53 9 chr9 36899671 36904490 -80958137 - L1MA3 LINE L1 -2191 4597 5 248 196 0 0 chr9 36904490 36904541 -80958086 - L2 LINE L2 -566 2748 2698 1993 74 47 37 chr9 36904549 36904624 -80958003 + L1MA2 LINE L1 6004 6077 -227 1724 104 0 0 chr9 36904624 36904845 -80957782 + AluSq SINE Alu 83 303 -10 1993 74 47 37 chr9 36904845 36905067 -80957560 + L1MA2 LINE L1 6077 6304 0 506 196 101 51 chr9 36905996 36906134 -80956493 + L2 LINE L2 3168 3312 -1 2293 128 35 99 chr9 36907487 36907693 -80954934 + MSTA LTR MaLR 2 165 -263 2501 66 3 0 chr9 36907703 36908005 -80954622 + AluY SINE Alu 1 303 -8 1347 103 20 5 chr9 36908005 36908189 -80954438 + L1PB2 LINE L1 5962 6151 0 2293 128 35 99 chr9 36908189 36908436 -80954191 + MSTA LTR MaLR 165 426 -2 181 241 35 17 chr9 36908906 36908964 -80953663 + L3 LINE CR1 1483 1541 -36 268 194 56 56 chr9 36909106 36909178 -80953449 + L2 LINE L2 3196 3267 -5 40 83 0 0 chr9 36909299 36909395 -80953232 + AT_rich Low_complexity Low_complexity 1 96 0 22 35 0 0 chr9 36909403 36909432 -80953195 + AT_rich Low_complexity Low_complexity 1 29 0 481 239 14 78 chr9 36909551 36909595 -80953032 + L2 LINE L2 3181 3226 -87 800 149 15 22 chr9 36909595 36909729 -80952898 - FLAM_A SINE Alu 0 133 1 481 239 14 78 chr9 36909729 36909826 -80952801 + L2 LINE L2 3226 3313 0 257 253 0 76 chr9 36909920 36909999 -80952628 - MIR SINE MIR 0 262 190 1684 84 0 5 chr9 36910050 36910264 -80952363 + AluY SINE Alu 1 213 -98 1380 114 144 0 chr9 36910370 36910571 -80952056 - AluSx SINE Alu -39 273 44 411 188 47 47 chr9 36911443 36911528 -80951099 + MER58B DNA MER1_type 256 340 -1 249 163 0 0 chr9 36911510 36911553 -80951074 + MER58B DNA MER1_type 299 341 0 * 1036 245 108 89 chr9 36911554 36911875 -80950752 - L2 LINE L2 -1134 2180 1842 2214 112 0 26 chr9 36911875 36912187 -80950440 + AluSx SINE Alu 3 306 -6 1036 245 108 89 chr9 36912187 36912429 -80950198 - L2 LINE L2 -1472 1842 1606 5697 24 2 5 chr9 36912700 36913329 -80949298 + SVA Other Other 757 1383 -3 535 241 0 9 chr9 36914183 36914291 -80948336 + MIR SINE MIR 38 144 -118 2382 62 7 26 chr9 36914313 36914619 -80948008 + AluY SINE Alu 2 301 -10 32 0 0 0 chr9 36914631 36914663 -80947964 + AT_rich Low_complexity Low_complexity 1 32 0 2028 123 10 3 chr9 36914663 36914964 -80947663 + AluSp SINE Alu 1 303 -10 1363 281 118 5 chr9 36914987 36915404 -80947223 - LTR16B LTR ERVL 0 464 1 4118 89 67 13 chr9 36915588 36916138 -80946489 + LTR19B LTR ERV1 1 580 0 684 205 16 8 chr9 36916138 36916265 -80946362 + FLAM_C SINE Alu 5 132 -11 2233 314 40 36 chr9 36916289 36917206 -80945421 - ERVL LTR ERVL -483 5281 4369 2222 127 40 54 chr9 36917206 36917576 -80945051 - MLT1A1 LTR MaLR 0 365 1 2233 314 40 36 chr9 36917576 36918343 -80944284 - ERVL LTR ERVL -1395 4369 3606 2696 72 3 3 chr9 36918343 36918677 -80943950 + L1PA6 LINE L1 5821 6154 0 2233 314 40 36 chr9 36918677 36918839 -80943788 - ERVL LTR ERVL -2158 3606 2393 192 40 0 0 chr9 36918850 36918875 -80943752 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1615 269 35 40 chr9 36918899 36919379 -80943248 - ERVL LTR ERVL -2723 2273 1796 2590 279 65 43 chr9 36919465 36920391 -80942236 - ERVL LTR ERVL -3579 1417 472 1199 183 0 0 chr9 36920394 36920569 -80942058 + FAM SINE Alu 1 175 0 389 282 29 62 chr9 36920948 36921157 -80941470 - LTR16B LTR ERVL 0 464 263 1547 231 81 21 chr9 36921157 36921529 -80941098 + MSTD LTR MaLR 1 394 -2 1143 244 34 8 chr9 36921529 36921791 -80940836 - LTR16B LTR ERVL -195 269 1 289 280 21 54 chr9 36921793 36921886 -80940741 + MIR SINE MIR 161 250 -12 475 268 48 74 chr9 36922621 36922852 -80939775 + MLT1K LTR MaLR 3 227 -361 8194 113 21 18 chr9 36922892 36923491 -80939136 + Tigger3b DNA MER2_type 1 597 -2431 2598 49 0 7 chr9 36923491 36923799 -80938828 + AluY SINE Alu 1 306 -5 8194 113 21 18 chr9 36923799 36924426 -80938201 + Tigger3b DNA MER2_type 597 1231 0 319 115 262 0 chr9 36924426 36924487 -80938140 + Tigger4(Zombi) DNA MER2_type 2655 2731 0 2719 205 79 80 chr9 36924488 36924932 -80937695 + L1M4 LINE L1 2260 2703 -3443 6358 60 1 1 chr9 36924932 36925692 -80936935 + L1PA8 LINE L1 5412 6171 -1 2719 205 79 80 chr9 36925692 36925781 -80936846 + L1M4 LINE L1 2703 2791 -3355 1891 94 4 16 chr9 36925781 36926037 -80936590 + AluSx SINE Alu 51 303 -9 2719 205 79 80 chr9 36926037 36926258 -80936369 + L1M4 LINE L1 2791 3011 -3135 775 114 9 0 chr9 36926258 36926372 -80936255 + L1MB7 LINE L1 6051 6165 -19 2719 205 79 80 chr9 36926372 36926725 -80935902 + L1M4 LINE L1 3011 3368 -2778 1611 196 38 25 chr9 36926729 36926913 -80935714 - MLT1E LTR MaLR 0 593 402 2815 158 33 56 chr9 36926913 36927427 -80935200 + MLT1D LTR MaLR 4 505 0 1611 196 38 25 chr9 36927427 36927558 -80935069 - MLT1E LTR MaLR -191 402 274 4111 206 74 54 chr9 36927558 36928393 -80934234 + L1M4 LINE L1 3988 4857 -1289 603 152 0 0 chr9 36928393 36928492 -80934135 - L1MA10 LINE L1 -2 6332 6234 4111 206 74 54 chr9 36928492 36928881 -80933746 + L1M4 LINE L1 4857 5237 -909 1113 154 99 41 chr9 36928881 36929102 -80933525 - AluJo SINE Alu -78 234 1 1412 173 69 49 chr9 36929327 36929633 -80932994 + AluJb SINE Alu 1 312 0 827 150 8 0 chr9 36929697 36929824 -80932803 + FLAM_C SINE Alu 5 132 -1 364 136 0 0 chr9 36930479 36930538 -80932089 + Alu SINE Alu 242 300 -2 750 160 0 0 chr9 36930732 36930838 -80931789 - FLAM_C SINE Alu -36 107 2 2209 97 7 3 chr9 36931061 36931350 -80931277 + AluSx SINE Alu 1 290 -22 267 314 79 36 chr9 36931795 36931935 -80930692 + L2 LINE L2 3114 3259 -13 2038 103 29 0 chr9 36931945 36932217 -80930410 - AluSx SINE Alu -32 280 1 388 342 9 20 chr9 36932566 36932732 -80929895 + MIR SINE MIR 2 166 -62 238 256 282 0 chr9 36934361 36934439 -80928188 - L2 LINE L2 -17 3255 3156 273 327 9 35 chr9 36935220 36935333 -80927294 + L2 LINE L2 2926 3035 -237 209 288 17 0 chr9 36935407 36935466 -80927161 - L2 LINE L2 0 3272 3213 185 229 0 62 chr9 36935446 36935494 -80927133 + L2 LINE L2 3223 3267 -5 * 643 88 0 0 chr9 36937195 36937275 -80925352 + FLAM_A SINE Alu 30 109 -33 625 220 95 18 chr9 36939208 36939376 -80923251 + AluJo SINE Alu 1 181 -131 484 130 169 0 chr9 36939411 36939488 -80923139 + FLAM_A SINE Alu 21 110 -32 1251 176 3 150 chr9 36939597 36939944 -80922683 - AluJo SINE Alu -5 297 2 690 261 63 34 chr9 36940157 36940395 -80922232 - MER112 DNA MER1_type -8 252 8 380 264 161 35 chr9 36940990 36941164 -80921463 - L1ME4a LINE L1 -195 5926 5731 303 284 47 100 chr9 36941740 36942126 -80920501 - L2 LINE L2 -114 3158 2726 261 327 115 59 chr9 36942124 36942264 -80920363 + L2 LINE L2 2301 2432 -882 * 2518 81 0 0 chr9 36942264 36942572 -80920055 + AluY SINE Alu 2 309 -2 261 327 115 59 chr9 36942572 36942770 -80919857 + L2 LINE L2 2432 2658 -656 599 221 18 0 chr9 36943876 36944020 -80918607 + FLAM_A SINE Alu 2 147 0 329 259 65 53 chr9 36944838 36945008 -80917619 + MER20B DNA MER1_type 5 176 -607 2548 67 0 0 chr9 36945537 36945836 -80916791 + AluSc SINE Alu 1 299 -10 553 158 97 2 chr9 36945878 36946002 -80916625 - MER20 DNA MER1_type -2 217 81 1037 173 18 0 chr9 36946903 36947071 -80915556 - FRAM SINE Alu -5 171 1 371 327 89 9 chr9 36947074 36947288 -80915339 + L2 LINE L2 1767 1997 -1317 1092 284 202 19 chr9 36947381 36948064 -80914563 + L2 LINE L2 1973 2780 -534 461 296 43 12 chr9 36948826 36948988 -80913639 + MIR3 SINE MIR 36 202 -6 22 0 0 0 chr9 36954640 36954662 -80907965 + AT_rich Low_complexity Low_complexity 1 22 0 670 233 218 5 chr9 36956115 36956321 -80906306 - MIR SINE MIR -10 252 3 191 283 100 0 chr9 36956554 36956614 -80906013 - L2 LINE L2 -2855 459 394 219 331 56 28 chr9 36956907 36957049 -80905578 + MIR SINE MIR 104 249 -13 506 280 212 40 chr9 36957319 36957461 -80905166 + L3 LINE CR1 816 932 -645 2306 118 0 13 chr9 36957461 36957776 -80904851 + AluSx SINE Alu 1 311 -1 506 280 212 40 chr9 36957776 36958105 -80904522 + L3 LINE CR1 932 1368 -209 1442 95 5 38 chr9 36958976 36959186 -80903441 - AluSg/x SINE Alu 0 312 110 208 283 0 0 chr9 36961152 36961198 -80901429 + polypurine Low_complexity Low_complexity 1 46 0 547 202 79 0 chr9 36962848 36962962 -80899665 - MIR3 SINE MIR 0 208 86 2371 102 3 0 chr9 36965860 36966163 -80896464 - AluSx SINE Alu -7 305 2 2235 90 28 3 chr9 36967389 36967677 -80894950 - AluSq SINE Alu -18 295 1 881 204 64 30 chr9 36970107 36970342 -80892285 + L1M4 LINE L1 793 1035 -5507 2872 78 92 5 chr9 36970342 36970754 -80891873 + LTR7 LTR ERV1 1 448 -2 11937 93 12 42 chr9 36970756 36973260 -80889367 + HERVH LTR ERV1 1 2318 -5395 2436 100 0 28 chr9 36973360 36973749 -80888878 + HERVH LTR ERV1 2618 2995 -4718 * 5803 93 5 2 chr9 36973728 36974580 -80888047 + HERVH LTR ERV1 3140 3993 -3720 4205 140 8 1 chr9 36974582 36975240 -80887387 + HERVH LTR ERV1 4488 5149 -2564 1340 118 38 0 chr9 36975241 36975453 -80887174 + HERVH LTR ERV1 5600 5819 -1894 * 2149 98 79 14 chr9 36975451 36975819 -80886808 + HERVH LTR ERV1 7322 7713 0 2239 83 246 6 chr9 36975819 36976180 -80886447 + LTR7 LTR ERV1 1 448 -2 468 208 58 52 chr9 36976182 36976336 -80886291 + L1M4 LINE L1 1031 1185 -5357 747 192 8 0 chr9 36976349 36976469 -80886158 - FLAM_C SINE Alu -22 121 1 1848 210 72 44 chr9 36976469 36976537 -80886090 + L1M4 LINE L1 1178 1243 -5403 1497 206 17 7 chr9 36976537 36976829 -80885798 + AluJo SINE Alu 9 303 -9 1848 210 72 44 chr9 36976829 36977496 -80885131 + L1M4 LINE L1 1243 1917 -4729 1848 231 17 0 chr9 36978112 36978576 -80884051 + L1 LINE L1 3549 4020 -2126 647 214 69 6 chr9 36978676 36978849 -80883778 + L1 LINE L1 3990 4173 -1973 630 175 0 0 chr9 36978849 36978946 -80883681 + AluJ/FLAM SINE Alu 1 97 -215 1510 200 35 0 chr9 36978954 36979269 -80883358 + MST-int LTR MaLR 124 449 -1202 4881 68 15 48 chr9 36979270 36979596 -80883031 - MER4A LTR ERV1 0 664 371 2002 127 9 64 chr9 36979596 36979926 -80882701 + AluSx SINE Alu 1 312 0 4881 68 15 48 chr9 36979926 36980286 -80882341 - MER4A LTR ERV1 -293 371 1 3104 151 79 18 chr9 36980290 36980948 -80881679 - MER4A-int LTR ERV1 0 6598 5901 934 135 0 0 chr9 36980953 36981086 -80881541 + AluSq/x SINE Alu 1 133 -179 1697 186 13 16 chr9 36981088 36981395 -80881232 + AluSx SINE Alu 1 306 -6 1140 117 22 70 chr9 36981397 36981810 -80880817 + L1MCa LINE L1 1477 1954 -4472 1880 162 3 23 chr9 36981939 36982241 -80880386 - AluSx SINE Alu -16 296 1 4017 136 40 28 chr9 36982241 36982891 -80879736 - MER4A-int LTR ERV1 -917 5029 4377 2183 161 0 0 chr9 36982891 36983202 -80879425 + AluSx SINE Alu 1 311 -1 4017 136 40 28 chr9 36983202 36983337 -80879290 - MER4A-int LTR ERV1 -1569 4377 4245 2448 88 0 0 chr9 36983337 36983633 -80878994 + AluSg SINE Alu 1 296 -14 7023 139 92 50 chr9 36983652 36984004 -80878623 - MER4-int LTR ERV1 -1744 4854 4518 2205 106 0 0 chr9 36984004 36984296 -80878331 + AluSx SINE Alu 1 292 -20 7023 139 92 50 chr9 36984296 36985950 -80876677 - MER4-int LTR ERV1 -2080 4518 1723 1712 162 0 25 chr9 36985950 36986264 -80876363 + AluSx SINE Alu 7 312 0 5397 80 44 31 chr9 36986298 36987024 -80875603 - L1PA11 LINE L1 0 6174 5436 1847 157 3 0 chr9 36987024 36987318 -80875309 - AluSx SINE Alu -17 295 1 5397 80 44 31 chr9 36987318 36987387 -80875240 - L1PA11 LINE L1 -738 5436 5369 954 162 39 15 chr9 36987387 36987591 -80875036 - MER4-int LTR ERV1 -5036 1722 1514 1508 142 56 19 chr9 36987600 36987679 -80874948 - MER4-int LTR ERV1 -4312 2286 2211 2333 66 0 13 chr9 36987679 36987980 -80874647 + AluY SINE Alu 1 297 -14 1508 142 56 19 chr9 36987980 36988223 -80874404 - MER4-int LTR ERV1 -4387 2211 1952 245 177 0 81 chr9 36988245 36988307 -80874320 - LTR26 LTR ERV1 -68 535 479 4622 99 0 2 chr9 36988309 36988947 -80873680 - MER4-int LTR ERV1 -3094 4619 3995 2560 137 0 3 chr9 36988957 36989338 -80873289 - MER4-int LTR ERV1 -3977 3736 3357 7979 175 37 23 chr9 36989338 36991686 -80870941 - MER4-int LTR ERV1 -4071 2583 793 1181 194 27 34 chr9 36991741 36992168 -80870459 - MER4-int LTR ERV1 -7255 458 1 1323 175 74 105 chr9 36992175 36992632 -80869995 - LTR7 LTR ERV1 -7 443 1 1982 161 40 70 chr9 36992632 36993128 -80869499 - MER4A-int LTR ERV1 -4593 2944 2435 360 0 0 0 chr9 36993128 36993168 -80869459 + (CA)n Simple_repeat Simple_repeat 2 41 0 1982 161 40 70 chr9 36993168 36993228 -80869399 - MER4A-int LTR ERV1 -5102 2435 1161 717 121 0 0 chr9 36993231 36993330 -80869297 + AluS SINE Alu 2 100 -212 2010 112 34 0 chr9 36993330 36993625 -80869002 + AluSx SINE Alu 1 305 -7 2257 122 19 72 chr9 36993625 36993709 -80868918 - MER83 LTR ERV1 -53 395 308 4125 80 18 11 chr9 36993709 36994259 -80868368 + MER41A LTR ERV1 1 554 0 2257 122 19 72 chr9 36994259 36994591 -80868036 - MER83 LTR ERV1 -140 308 1 2604 103 110 55 chr9 36994596 36995154 -80867473 - MER4A-int LTR ERV1 -5952 646 1 4611 93 16 31 chr9 36995157 36995831 -80866796 - MER4A LTR ERV1 0 664 1 4740 208 19 18 chr9 36995835 36996762 -80865865 + MSTB1-int LTR MaLR 451 1378 -273 1393 186 4 4 chr9 36996811 36997080 -80865547 - AluJo SINE Alu -41 271 3 1421 136 49 15 chr9 36997080 36997345 -80865282 + MSTB1-int LTR MaLR 1376 1649 -2 2178 137 109 0 chr9 36997437 36997803 -80864824 + MSTB1 LTR MaLR 27 432 0 1022 175 10 10 chr9 36997887 36998081 -80864546 - AluJo SINE Alu -118 194 1 2131 127 0 0 chr9 36998091 36998391 -80864236 - AluSg SINE Alu -10 300 1 789 284 58 47 chr9 36999238 36999372 -80863255 + L1MEd LINE L1 457 588 -5531 1966 133 0 0 chr9 36999372 36999666 -80862961 + AluSx SINE Alu 1 294 -18 243 0 0 0 chr9 36999670 36999697 -80862930 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 789 284 58 47 chr9 36999697 36999937 -80862690 + L1MEd LINE L1 590 840 -5279 308 330 20 10 chr9 36999974 37000074 -80862553 - L2 LINE L2 -189 3083 2983 2119 91 24 10 chr9 37000075 37000372 -80862255 + AluY SINE Alu 1 301 -10 680 344 96 43 chr9 37000436 37001131 -80861496 - L2 LINE L2 -340 2974 2243 234 233 49 37 chr9 37001295 37001405 -80861222 + L1ME LINE L1 5714 5828 -293 1944 128 3 16 chr9 37001405 37001541 -80861086 + AluSx SINE Alu 1 137 -175 2081 128 0 0 chr9 37001541 37001845 -80860782 + AluSq SINE Alu 1 304 -9 1944 128 3 16 chr9 37001845 37002014 -80860613 + AluSx SINE Alu 137 302 -10 234 233 49 37 chr9 37002014 37002066 -80860561 + L1ME LINE L1 5828 5878 -243 918 87 0 0 chr9 37002100 37002215 -80860412 + AluSg1 SINE Alu 29 143 -166 1966 83 0 0 chr9 37002216 37002468 -80860159 + AluSg SINE Alu 2 253 -57 1136 110 0 0 chr9 37002479 37002670 -80859957 + AluSg1 SINE Alu 119 309 0 1892 109 42 7 chr9 37002714 37002999 -80859628 + AluSg SINE Alu 3 297 -13 470 111 0 0 chr9 37004464 37004527 -80858100 + MLT1A2 LTR MaLR 266 328 -46 189 107 0 0 chr9 37004528 37004556 -80858071 + (A)n Simple_repeat Simple_repeat 1 28 0 21 36 0 0 chr9 37004629 37004657 -80857970 + AT_rich Low_complexity Low_complexity 1 28 0 908 106 15 0 chr9 37004784 37004916 -80857711 + AluJo SINE Alu 1 134 -178 1650 130 0 4 chr9 37005136 37005383 -80857244 + AluSq SINE Alu 1 246 -67 1702 166 7 7 chr9 37005488 37005784 -80856843 + AluJb SINE Alu 1 296 -16 890 184 0 18 chr9 37006112 37006280 -80856347 - FRAM SINE Alu -10 166 2 553 281 0 0 chr9 37006304 37006418 -80856209 - Charlie8 DNA MER1_type -2152 265 152 2221 75 0 0 chr9 37006502 37006810 -80855817 + AluY SINE Alu 2 309 0 968 330 90 44 chr9 37006884 37007910 -80854717 + L2 LINE L2 2200 3272 0 270 341 179 8 chr9 37007912 37008035 -80854592 - MIR3 SINE MIR -48 160 17 532 195 41 179 chr9 37008299 37008335 -80854292 - MIR SINE MIR -42 220 181 4781 39 15 5 chr9 37008335 37008920 -80853707 - LTR10C LTR ERV1 0 591 1 532 195 41 179 chr9 37008920 37008961 -80853666 - MIR SINE MIR -81 181 136 632 225 8 0 chr9 37008961 37009081 -80853546 + FLAM_A SINE Alu 1 121 -12 1834 142 3 20 chr9 37009087 37009390 -80853237 + AluJb SINE Alu 2 299 -13 532 195 41 179 chr9 37009390 37009550 -80853077 - MIR SINE MIR -131 131 9 234 239 0 0 chr9 37010418 37010464 -80852163 + GA-rich Low_complexity Low_complexity 2 47 0 1525 181 62 120 chr9 37014033 37014110 -80848517 - MLT1D LTR MaLR 0 505 425 1415 165 24 62 chr9 37014110 37014401 -80848226 + AluJb SINE Alu 3 282 -30 1525 181 62 120 chr9 37014401 37014636 -80847991 - MLT1D LTR MaLR -80 425 178 2242 61 0 10 chr9 37014636 37014930 -80847697 - AluY SINE Alu -8 303 13 2222 99 3 7 chr9 37014930 37015234 -80847393 - AluSp SINE Alu -10 303 1 1525 181 62 120 chr9 37015234 37015322 -80847305 - MLT1D LTR MaLR -326 179 139 1637 148 31 21 chr9 37015322 37015613 -80847014 + AluSx SINE Alu 1 294 -18 1525 181 62 120 chr9 37015613 37015741 -80846886 - MLT1D LTR MaLR -366 139 5 220 292 231 36 chr9 37016084 37016276 -80846351 + L2 LINE L2 2264 2417 -897 1860 120 33 0 chr9 37016276 37016577 -80846050 + AluSx SINE Alu 1 310 0 220 292 231 36 chr9 37016577 37016691 -80845936 + L2 LINE L2 2417 2631 -683 1486 186 44 24 chr9 37016773 37017068 -80845559 + 7SLRNA srpRNA srpRNA 1 301 -19 1696 156 0 17 chr9 37017224 37017512 -80845115 - AluJo SINE Alu -19 293 11 2250 76 0 10 chr9 37017569 37017870 -80844757 + AluY SINE Alu 1 298 -13 395 234 92 46 chr9 37017888 37018055 -80844572 + L1ME4a LINE L1 5894 6075 -46 1699 181 0 3 chr9 37018055 37018347 -80844280 - AluJb SINE Alu -21 291 1 395 234 92 46 chr9 37018347 37018397 -80844230 + L1ME4a LINE L1 6075 6121 0 2045 52 99 0 chr9 37019419 37019691 -80842936 - AluY SINE Alu -12 299 1 192 253 108 48 chr9 37019944 37020027 -80842600 - MIR3 SINE MIR -39 169 82 6261 109 25 20 chr9 37020031 37020101 -80842526 + L1PB1 LINE L1 4924 4992 -1159 1830 122 20 17 chr9 37020101 37020397 -80842230 + AluSx SINE Alu 1 297 -15 6261 109 25 20 chr9 37020397 37021184 -80841443 + L1PB1 LINE L1 4992 5788 -363 1719 114 0 0 chr9 37021184 37021429 -80841198 + AluSx SINE Alu 63 307 -5 6261 109 25 20 chr9 37021429 37021794 -80840833 + L1PB1 LINE L1 5788 6150 -1 5662 148 86 21 chr9 37021956 37022424 -80840203 + Ricksha_b DNA DNA 69 506 -2760 2102 98 7 0 chr9 37022424 37022720 -80839907 - AluSp SINE Alu -15 298 1 5662 148 86 21 chr9 37022720 37023412 -80839215 + Ricksha_b DNA DNA 506 1654 -12 31 68 0 0 chr9 37023541 37023600 -80839027 + AT_rich Low_complexity Low_complexity 1 59 0 717 243 68 9 chr9 37025211 37025433 -80837194 + L1ME1 LINE L1 5927 6161 -5 2138 98 0 16 chr9 37025995 37026300 -80836327 + AluY SINE Alu 12 311 0 1776 169 7 0 chr9 37027361 37027657 -80834970 + AluJo SINE Alu 8 305 -7 469 270 9 17 chr9 37029264 37029379 -80833248 - MER81 DNA DNA 0 114 1 262 211 0 0 chr9 37031237 37031289 -80831338 - Charlie1 DNA MER1_type 0 2761 2710 686 133 80 18 chr9 37031918 37032031 -80830596 + FLAM_C SINE Alu 3 122 -21 2136 116 0 0 chr9 37032386 37032680 -80829947 - AluSx SINE Alu -18 294 1 1862 85 0 0 chr9 37033411 37033658 -80828969 + AluSx SINE Alu 56 302 -10 775 155 0 0 chr9 37033661 37033777 -80828850 + AluJo/FLAM SINE Alu 1 116 -186 1326 138 165 8 chr9 37033777 37034038 -80828589 - AluYb8 SINE Alu -16 302 1 183 80 0 0 chr9 37034094 37034119 -80828508 + (A)n Simple_repeat Simple_repeat 1 25 0 840 264 50 0 chr9 37036213 37036433 -80826194 + MIR SINE MIR 5 235 -27 2447 92 3 0 chr9 37036957 37037263 -80825364 - AluSq SINE Alu -5 308 2 445 172 32 11 chr9 37037379 37037472 -80825155 - L2 LINE L2 0 3313 3219 2075 111 7 14 chr9 37037951 37038248 -80824379 - AluSx SINE Alu -17 295 1 219 363 35 9 chr9 37038524 37038637 -80823990 + L3b LINE CR1 1115 1230 -353 198 0 0 0 chr9 37038806 37038828 -80823799 + (T)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr9 37039494 37039517 -80823110 + GC_rich Low_complexity Low_complexity 1 23 0 211 256 0 0 chr9 37040059 37040098 -80822529 + (CGG)n Simple_repeat Simple_repeat 2 40 0 275 320 0 0 chr9 37042053 37042131 -80820496 - MIR SINE MIR -64 144 67 998 137 0 82 chr9 37045267 37045450 -80817177 - FRAM SINE Alu -16 160 1 1712 207 25 103 chr9 37047776 37047953 -80814674 + L1MB8 LINE L1 4897 5086 -1080 1677 84 14 0 chr9 37047953 37048168 -80814459 + AluSg/x SINE Alu 84 301 -9 1712 207 25 103 chr9 37048168 37048314 -80814313 + L1MB8 LINE L1 5086 5242 -924 2428 65 7 3 chr9 37048314 37048624 -80814003 + AluY SINE Alu 1 311 0 1712 207 25 103 chr9 37048624 37048646 -80813981 + L1MB8 LINE L1 5242 5264 -902 1566 159 10 54 chr9 37048646 37048941 -80813686 + AluJo SINE Alu 12 293 -19 1712 207 25 103 chr9 37048941 37049058 -80813569 + L1MB8 LINE L1 5264 5388 -778 2030 144 0 13 chr9 37049058 37049363 -80813264 + AluJb SINE Alu 1 301 -11 1712 207 25 103 chr9 37049363 37049503 -80813124 + L1MB8 LINE L1 5388 5537 -629 2127 121 0 0 chr9 37049503 37049783 -80812844 + AluSx SINE Alu 17 296 -16 2220 134 0 0 chr9 37049793 37050100 -80812527 + AluSx SINE Alu 1 307 -5 1712 207 25 103 chr9 37050100 37050259 -80812368 + L1MB8 LINE L1 5546 5580 -586 2505 82 0 0 chr9 37050259 37050562 -80812065 + AluY SINE Alu 1 303 -8 1712 207 25 103 chr9 37050562 37050731 -80811896 + L1MB8 LINE L1 5580 5760 -406 581 37 24 12 chr9 37050779 37050861 -80811766 - AluSg/x SINE Alu -19 291 209 216 0 0 0 chr9 37050884 37050908 -80811719 + (A)n Simple_repeat Simple_repeat 1 24 0 1944 114 23 4 chr9 37050924 37051220 -80811407 + AluSx SINE Alu 14 314 0 4194 165 62 34 chr9 37051321 37051415 -80811212 + L1MB7 LINE L1 5081 5171 -1013 2618 66 0 0 chr9 37051415 37051719 -80810908 + AluSc SINE Alu 1 304 -5 4194 165 62 34 chr9 37051719 37051872 -80810755 + L1MB7 LINE L1 5171 5318 -866 1943 167 3 3 chr9 37051872 37052177 -80810450 + AluJo SINE Alu 1 305 -7 4194 165 62 34 chr9 37052177 37053005 -80809622 + L1MB7 LINE L1 5318 6165 -19 1527 181 42 11 chr9 37053015 37053368 -80809259 + L1MB8 LINE L1 5815 6178 0 827 174 0 7 chr9 37053375 37053519 -80809108 + FLAM_C SINE Alu 1 143 0 927 153 213 59 chr9 37053579 37053833 -80808794 - AluJo SINE Alu -19 293 1 2420 105 0 0 chr9 37054238 37054542 -80808085 - AluSx SINE Alu -8 304 1 1476 188 79 0 chr9 37054617 37054883 -80807744 + AluJo SINE Alu 1 287 -25 868 121 0 45 chr9 37055759 37055891 -80806736 - FLAM_C SINE Alu -17 126 1 305 274 14 0 chr9 37056634 37056707 -80805920 + MIR SINE MIR 30 103 -105 311 247 54 21 chr9 37056926 37057019 -80805608 + MIR SINE MIR 30 125 -83 1989 99 37 0 chr9 37062778 37063051 -80799576 + AluSx SINE Alu 1 283 -29 188 250 91 45 chr9 37063054 37063142 -80799485 - MER5A DNA MER1_type -66 123 32 235 204 330 10 chr9 37063847 37063950 -80798677 + MIR SINE MIR 16 151 -111 2289 110 0 0 chr9 37064074 37064374 -80798253 + AluSx SINE Alu 1 300 -12 2007 149 0 3 chr9 37064375 37064671 -80797956 + AluSx SINE Alu 2 296 -16 542 231 176 52 chr9 37064672 37065137 -80797490 + L2 LINE L2 2740 3263 -50 245 313 30 30 chr9 37065204 37065370 -80797257 + L2 LINE L2 2554 2719 -595 976 114 23 0 chr9 37065375 37065506 -80797121 - AluJb SINE Alu -178 134 1 2308 104 0 0 chr9 37065560 37065858 -80796769 + AluSg SINE Alu 1 298 -12 2097 123 7 3 chr9 37066146 37066439 -80796188 - AluSc SINE Alu -15 294 1 351 354 70 0 chr9 37066444 37066602 -80796025 + L2 LINE L2 3104 3272 0 212 224 60 30 chr9 37070853 37070920 -80791707 - MIR3 SINE MIR -41 167 99 189 0 0 0 chr9 37071136 37071157 -80791470 + (CAA)n Simple_repeat Simple_repeat 1 21 0 247 261 15 0 chr9 37071586 37071651 -80790976 + (CA)n Simple_repeat Simple_repeat 1 66 0 32 0 0 0 chr9 37071910 37071942 -80790685 + AT_rich Low_complexity Low_complexity 1 32 0 836 143 0 0 chr9 37072459 37072585 -80790042 + FLAM_C SINE Alu 1 126 -7 216 97 0 0 chr9 37072588 37072619 -80790008 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1835 169 10 16 chr9 37074087 37074401 -80788226 + AluJb SINE Alu 1 312 0 1946 143 7 3 chr9 37075159 37075453 -80787174 + AluSx SINE Alu 12 306 -6 2264 97 0 31 chr9 37075660 37075980 -80786647 + AluSq SINE Alu 1 310 -3 500 196 9 27 chr9 37075989 37076101 -80786526 - L1ME LINE L1 -502 5668 5559 1136 190 111 67 chr9 37076104 37076535 -80786092 + LTR7 LTR ERV1 1 450 0 1737 199 3 6 chr9 37076781 37077092 -80785535 - AluJo SINE Alu -2 310 1 304 211 67 48 chr9 37077244 37077348 -80785279 + L1MCa LINE L1 1975 2080 -4346 2060 140 0 7 chr9 37077352 37077644 -80784983 - AluSx SINE Alu -22 290 1 2401 102 0 0 chr9 37077658 37077961 -80784666 - AluSg SINE Alu -7 303 1 4867 97 15 0 chr9 37078000 37078681 -80783946 - LTR8 LTR ERV1 0 691 1 1129 170 11 6 chr9 37078811 37078993 -80783634 + AluJo SINE Alu 2 184 -128 2308 56 42 14 chr9 37079289 37079575 -80783052 - AluY SINE Alu -15 296 3 594 173 0 0 chr9 37079584 37079688 -80782939 + Cheshire DNA MER1_type 795 898 -1522 1648 138 59 62 chr9 37079783 37079984 -80782643 - AluJb SINE Alu -6 306 105 2286 126 0 0 chr9 37079984 37080286 -80782341 + AluSx SINE Alu 1 302 -10 1648 138 59 62 chr9 37080286 37080389 -80782238 - AluJb SINE Alu -207 105 3 1436 184 33 21 chr9 37080803 37080834 -80781793 + Cheshire DNA MER1_type 896 925 -1495 2214 97 0 14 chr9 37080834 37081122 -80781505 + AluSx SINE Alu 20 303 -9 1436 184 33 21 chr9 37081122 37081427 -80781200 + Cheshire DNA MER1_type 925 1236 -1184 594 124 21 10 chr9 37081430 37081527 -80781100 + MER4A LTR ERV1 1 98 -566 1394 188 6 38 chr9 37081527 37081884 -80780743 + MER4A LTR ERV1 261 664 0 655 193 86 49 chr9 37081886 37082355 -80780272 + MER4A-int LTR ERV1 1 624 -5974 279 0 0 0 chr9 37082356 37082387 -80780240 + (TG)n Simple_repeat Simple_repeat 2 32 0 420 347 0 47 chr9 37082442 37082655 -80779972 + MER4A-int LTR ERV1 374 576 -6182 4436 100 170 146 chr9 37082766 37083287 -80779340 + MER4A-int LTR ERV1 499 1006 -5592 2321 102 0 13 chr9 37083287 37083601 -80779026 - AluSg SINE Alu 0 310 1 4436 100 170 146 chr9 37083601 37084181 -80778446 + MER4A-int LTR ERV1 1006 1571 -5027 2402 89 3 0 chr9 37084181 37084484 -80778143 + AluSp SINE Alu 1 304 -9 4436 100 170 146 chr9 37084484 37085109 -80777518 + MER4A-int LTR ERV1 1571 2180 -4418 2295 95 3 3 chr9 37085109 37085404 -80777223 + AluSq SINE Alu 1 295 -18 4436 100 170 146 chr9 37085404 37085857 -80776770 + MER4A-int LTR ERV1 2180 3320 -3278 * 15203 103 55 46 chr9 37085853 37086440 -80776187 + MER4A-int LTR ERV1 3916 4497 -2101 2707 7 0 0 chr9 37086440 37086740 -80775887 - AluY SINE Alu -11 300 1 15203 103 55 46 chr9 37086740 37087781 -80774846 + MER4A-int LTR ERV1 4497 5528 -1070 2158 85 7 7 chr9 37087781 37088076 -80774551 + AluY SINE Alu 1 295 -16 15203 103 55 46 chr9 37088076 37089107 -80773520 + MER4A-int LTR ERV1 5528 6598 0 542 134 31 21 chr9 37089108 37089205 -80773422 + MER4A LTR ERV1 1 98 -566 1474 151 3 26 chr9 37089205 37089496 -80773131 + MER4A LTR ERV1 261 603 -61 300 71 0 0 chr9 37089491 37089533 -80773094 - MER58 DNA MER1_type -80 2340 2299 * 1633 143 61 14 chr9 37089607 37089887 -80772740 + AluSx SINE Alu 1 293 -19 355 302 128 27 chr9 37089887 37090145 -80772482 - L2 LINE L2 -112 3201 2918 1994 106 0 0 chr9 37090146 37090420 -80772207 + AluSg SINE Alu 1 274 -36 1392 174 0 60 chr9 37090651 37090950 -80771677 - AluJo SINE Alu -11 301 21 569 119 12 0 chr9 37090952 37091036 -80771591 + MER67A LTR ERV1 100 184 -359 383 114 0 100 chr9 37091028 37091098 -80771529 + AluJo/FLAM SINE Alu 64 118 -184 * 1454 148 0 17 chr9 37091101 37091338 -80771289 + AluSx SINE Alu 1 233 -79 345 87 0 0 chr9 37091338 37091384 -80771243 - HUERS-P1 LTR ERV1 -4268 1995 1950 310 176 118 47 chr9 37091387 37091472 -80771155 - HUERS-P1 LTR ERV1 -4211 1735 1645 254 263 0 18 chr9 37091474 37091531 -80771096 - tRNA-Glu-GAG tRNA tRNA -13 62 7 3459 128 64 15 chr9 37091538 37091967 -80770660 - HUERS-P1 LTR ERV1 -4367 1579 1172 1991 128 0 3 chr9 37091967 37092265 -80770362 - AluSg SINE Alu -9 301 5 3459 128 64 15 chr9 37092265 37093220 -80769407 - HUERS-P1 LTR ERV1 -4774 1172 2 1063 86 0 49 chr9 37093305 37093467 -80769160 - MER41A LTR ERV1 0 554 401 839 130 8 0 chr9 37093468 37093599 -80769028 - AluJb SINE Alu -12 300 169 7323 130 65 23 chr9 37093602 37093696 -80768931 + MER52C LTR ERV1 1 90 -1188 2289 91 0 0 chr9 37093696 37094005 -80768622 - AluY SINE Alu -2 309 1 7323 130 65 23 chr9 37094005 37095134 -80767493 + MER52C LTR ERV1 90 1276 -2 3273 130 92 2 chr9 37095136 37095659 -80766968 + MER52C-int LTR ERV1 2 571 -6520 6562 166 37 15 chr9 37095798 37097138 -80765489 + MER52C-int LTR ERV1 1761 3204 -3887 3743 163 26 22 chr9 37097157 37097840 -80764787 + LTR25-int LTR ERV1 807 1492 -5599 1444 194 36 91 chr9 37097945 37098214 -80764413 + LTR25-int LTR ERV1 1213 1495 -4091 2157 84 0 3 chr9 37098214 37098525 -80764102 + AluY SINE Alu 1 310 0 1444 194 36 91 chr9 37098525 37098646 -80763981 + LTR25-int LTR ERV1 1495 1621 -3965 2264 104 0 3 chr9 37098646 37098955 -80763672 + AluSx SINE Alu 5 312 0 1444 194 36 91 chr9 37098955 37098973 -80763654 + LTR25-int LTR ERV1 1621 1638 -3948 2063 140 0 3 chr9 37098973 37099281 -80763346 + AluSx SINE Alu 1 307 -5 1444 194 36 91 chr9 37099281 37099340 -80763287 + LTR25-int LTR ERV1 1638 1938 -3648 * 3667 134 105 29 chr9 37099332 37100034 -80762593 + LTR25-int LTR ERV1 592 1347 -6469 263 150 17 17 chr9 37100020 37100080 -80762547 + LTR25-int LTR ERV1 1051 1110 -7010 * 299 135 19 0 chr9 37100077 37100129 -80762498 + LTR25-int LTR ERV1 4622 4674 -2322 1712 176 31 6 chr9 37100461 37100793 -80761834 + LTR25-int LTR ERV1 3269 3591 -3405 198 0 0 0 chr9 37100793 37100815 -80761812 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1712 176 31 6 chr9 37100815 37100851 -80761776 + LTR25-int LTR ERV1 3591 4954 -2042 29 0 0 0 chr9 37100866 37100895 -80761732 + AT_rich Low_complexity Low_complexity 1 29 0 628 201 50 60 chr9 37100896 37101095 -80761532 + L1MA2 LINE L1 6102 6298 -6 24 67 0 0 chr9 37101418 37101463 -80761164 + AT_rich Low_complexity Low_complexity 1 45 0 1996 135 0 0 chr9 37101705 37102002 -80760625 + AluSx SINE Alu 1 297 -15 263 274 84 95 chr9 37104624 37104898 -80757729 + L2 LINE L2 2985 3255 -17 2361 70 7 0 chr9 37107481 37107783 -80754844 + AluSg SINE Alu 3 306 -4 1528 119 107 0 chr9 37107799 37108090 -80754537 + AluSx SINE Alu 14 330 0 4469 159 71 56 chr9 37108191 37108285 -80754342 + L1MB7 LINE L1 5081 5172 -1012 2471 63 0 0 chr9 37108285 37108587 -80754040 + AluSc SINE Alu 1 302 -7 4469 159 71 56 chr9 37108587 37108740 -80753887 + L1MB7 LINE L1 5172 5321 -863 1784 157 3 3 chr9 37108740 37109027 -80753600 + AluJo SINE Alu 1 287 -25 4469 159 71 56 chr9 37109027 37109873 -80752754 + L1MB7 LINE L1 5321 6165 -19 1671 176 42 11 chr9 37109883 37110236 -80752391 + L1MB8 LINE L1 5815 6178 0 728 179 0 21 chr9 37110244 37110389 -80752238 + FLAM_C SINE Alu 2 143 0 834 158 217 63 chr9 37110447 37110700 -80751927 - AluJb SINE Alu -9 293 2 2254 106 0 0 chr9 37111106 37111409 -80751218 - AluSx SINE Alu -9 303 1 1338 188 79 0 chr9 37111484 37111750 -80750877 + AluJo SINE Alu 1 287 -25 804 121 0 45 chr9 37112626 37112758 -80749869 - FLAM_C SINE Alu -17 126 1 2140 107 3 0 chr9 37115059 37115357 -80747270 + AluSc SINE Alu 1 299 -10 1981 168 143 32 chr9 37115357 37116158 -80746469 + MER52C-int LTR ERV1 2270 4690 -1256 378 58 39 0 chr9 37116162 37116214 -80746413 + MER52C-int LTR ERV1 5976 6029 -1176 * 1297 128 20 0 chr9 37116211 37116406 -80746221 + MER52C-int LTR ERV1 6892 7090 -1 1165 121 12 0 chr9 37116407 37116580 -80746047 + MER52C LTR ERV1 1 175 -1103 1505 164 0 0 chr9 37116591 37116829 -80745798 - AluSq SINE Alu -75 238 1 883 73 16 0 chr9 37116829 37116953 -80745674 - MER4-int LTR ERV1 -4171 2427 2302 1979 119 38 13 chr9 37116953 37117327 -80745300 - LTR7 LTR ERV1 0 450 1 3411 127 11 26 chr9 37117328 37117893 -80744734 - HERVH LTR ERV1 -1 7712 7157 2177 93 3 0 chr9 37121038 37121338 -80741289 - AluSx SINE Alu -11 301 1 1809 141 6 33 chr9 37121679 37121860 -80740767 - L1MC3 LINE L1 -17 7768 7599 2221 83 7 3 chr9 37121860 37122160 -80740467 - AluSp SINE Alu -12 301 1 1809 141 6 33 chr9 37122160 37122311 -80740316 - L1MC3 LINE L1 -186 7599 7445 2323 75 0 0 chr9 37122311 37122605 -80740022 - AluY SINE Alu -16 295 2 553 281 0 0 chr9 37122690 37122804 -80739823 + Charlie8 DNA MER1_type 152 265 -2152 897 183 0 18 chr9 37122828 37122997 -80739630 + FRAM SINE Alu 2 167 -9 1702 166 7 7 chr9 37123325 37123621 -80739006 - AluJb SINE Alu -16 296 1 1650 130 0 4 chr9 37123726 37123973 -80738654 - AluSq SINE Alu -67 246 1 908 106 15 0 chr9 37124194 37124326 -80738301 - AluJo SINE Alu -178 134 1 21 36 0 0 chr9 37124453 37124481 -80738146 + AT_rich Low_complexity Low_complexity 1 28 0 189 107 0 0 chr9 37124554 37124582 -80738045 + (T)n Simple_repeat Simple_repeat 1 28 0 470 111 0 0 chr9 37124583 37124646 -80737981 - MLT1A2 LTR MaLR -46 328 266 1970 105 41 7 chr9 37126111 37126406 -80736221 - AluSg SINE Alu -3 307 3 1983 92 0 41 chr9 37126450 37126771 -80735856 - AluSg SINE Alu 0 309 1 271 231 0 0 chr9 37126772 37126824 -80735803 + HERVH LTR ERV1 3503 3554 -4159 1223 252 0 0 chr9 37126889 37127167 -80735460 + HERVH LTR ERV1 4416 4693 -3020 * 4082 111 3 2 chr9 37127161 37127764 -80734863 + HERVH LTR ERV1 5400 6003 -1710 28345 46 1 2 chr9 37127864 37131962 -80730665 - L1PA5 LINE L1 -141 6013 1922 10232 146 10 15 chr9 37132064 37134321 -80728306 - HERVH LTR ERV1 -4207 3506 830 1141 214 31 25 chr9 37134389 37134814 -80727813 - HERVH LTR ERV1 -7254 459 1 2146 99 42 6 chr9 37134814 37135190 -80727437 - LTR7 LTR ERV1 0 450 1 2778 90 60 100 chr9 37135190 37135265 -80727362 - MER4-int LTR ERV1 -4292 2306 2230 4865 128 28 4 chr9 37135265 37136026 -80726601 + MER4E LTR ERV1 1 779 0 2778 90 60 100 chr9 37136026 37136228 -80726399 - MER4-int LTR ERV1 -4368 2230 2022 2139 128 7 0 chr9 37136228 37136526 -80726101 - AluSq SINE Alu -13 300 1 2778 90 60 100 chr9 37136526 37136827 -80725800 - MER4-int LTR ERV1 -4576 2022 1748 5380 119 81 37 chr9 37136831 37137430 -80725197 - MER4-int LTR ERV1 -5599 1159 507 1663 201 7 3 chr9 37137430 37137718 -80724909 - AluSx SINE Alu -23 289 1 5380 119 81 37 chr9 37137718 37138007 -80724620 - MER4-int LTR ERV1 -6251 507 232 1191 108 12 0 chr9 37138007 37138173 -80724454 - AluSg/x SINE Alu -15 295 128 535 127 0 0 chr9 37138173 37138252 -80724375 - AluJ/FLAM SINE Alu -232 80 2 298 70 0 23 chr9 37138252 37138295 -80724332 - MER4-int LTR ERV1 -6515 243 202 219 69 0 0 chr9 37138297 37138326 -80724301 + (A)n Simple_repeat Simple_repeat 1 29 0 1240 227 44 61 chr9 37138333 37138578 -80724049 - MER4-int LTR ERV1 -4129 2202 1963 2317 87 0 13 chr9 37138578 37138878 -80723749 - AluSg SINE Alu -14 296 1 1240 227 44 61 chr9 37138878 37138993 -80723634 - MER4-int LTR ERV1 -4368 1963 1848 2380 72 3 16 chr9 37138996 37139303 -80723324 - AluSg SINE Alu -7 303 1 306 177 0 62 chr9 37139362 37139458 -80723169 - MER4-int LTR ERV1 -5758 840 751 2729 115 76 29 chr9 37139495 37139786 -80722841 - MER4-int LTR ERV1 -6009 589 313 333 0 0 0 chr9 37139786 37139823 -80722804 + (TAA)n Simple_repeat Simple_repeat 2 38 0 2729 115 76 29 chr9 37139823 37140026 -80722601 - MER4-int LTR ERV1 -6285 313 1 323 330 0 0 chr9 37140026 37140114 -80722513 - L2 LINE L2 -2 3311 3224 180 0 0 0 chr9 37141451 37141471 -80721156 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 2181 140 0 0 chr9 37142587 37142895 -80719732 - AluSx SINE Alu -3 309 2 730 262 118 54 chr9 37143512 37143901 -80718726 + L3 LINE CR1 1004 1417 -160 2452 65 13 10 chr9 37143990 37144296 -80718331 - AluSg SINE Alu -3 307 1 1761 148 7 7 chr9 37144773 37145043 -80717584 + AluSx SINE Alu 21 290 -22 338 191 76 19 chr9 37145053 37145158 -80717469 - L1ME4a LINE L1 -20 6101 5991 718 194 0 8 chr9 37145170 37145294 -80717333 - FLAM_A SINE Alu -7 126 4 1186 139 106 14 chr9 37145596 37145724 -80716903 - MER30 DNA MER1_type 0 230 74 2147 98 34 0 chr9 37145724 37146021 -80716606 - AluY SINE Alu -4 307 1 1186 139 106 14 chr9 37146021 37146100 -80716527 - MER30 DNA MER1_type -156 74 4 426 242 65 17 chr9 37146110 37146241 -80716386 - L1ME4a LINE L1 -297 5824 5701 2122 98 0 54 chr9 37146241 37146557 -80716070 - AluSg SINE Alu -11 299 1 426 242 65 17 chr9 37146557 37146576 -80716051 - L1ME4a LINE L1 -420 5701 5684 1874 176 3 0 chr9 37146576 37146872 -80715755 - AluJo SINE Alu -15 297 1 426 242 65 17 chr9 37146872 37146887 -80715740 - L1ME4a LINE L1 -437 5684 5658 867 130 35 59 chr9 37146889 37147058 -80715569 - L1PA15 LINE L1 0 6165 6001 1604 148 111 7 chr9 37147358 37147628 -80714999 - AluJb SINE Alu -14 298 1 1699 159 28 14 chr9 37147723 37148006 -80714621 + AluJo SINE Alu 1 287 -25 2338 112 0 0 chr9 37148817 37149120 -80713507 - AluSx SINE Alu -9 303 1 1682 165 18 28 chr9 37149135 37149420 -80713207 - AluJo SINE Alu -24 288 7 1620 211 0 7 chr9 37149465 37149763 -80712864 - AluJb SINE Alu -16 296 1 2213 113 3 0 chr9 37149765 37150056 -80712571 - AluSq SINE Alu -21 292 1 1698 170 3 14 chr9 37150066 37150354 -80712273 - AluJo SINE Alu -23 289 5 359 260 32 8 chr9 37150363 37150486 -80712141 - L1ME3A LINE L1 -281 5889 5764 211 281 148 39 chr9 37150530 37150658 -80711969 + L3b LINE CR1 1324 1465 -118 24 0 0 0 chr9 37150673 37150697 -80711930 + AT_rich Low_complexity Low_complexity 1 24 0 803 121 0 53 chr9 37150697 37150829 -80711798 - FLAM_C SINE Alu -18 125 1 1395 188 36 10 chr9 37150836 37151139 -80711488 - L1MA4 LINE L1 0 6300 5990 2134 124 0 0 chr9 37152080 37152378 -80710249 - AluSx SINE Alu -14 298 1 210 370 22 7 chr9 37152449 37152584 -80710043 + MIR SINE MIR 5 141 -121 1571 149 100 0 chr9 37152826 37152979 -80709648 - AluY SINE Alu -24 287 151 1471 131 4 18 chr9 37152979 37153208 -80709419 - AluSg/x SINE Alu -14 298 73 1898 62 0 9 chr9 37153208 37153434 -80709193 - AluY SINE Alu -17 294 70 1571 149 100 0 chr9 37153434 37153540 -80709087 - AluY SINE Alu -159 152 1 1048 209 47 5 chr9 37153542 37153753 -80708874 - AluJo SINE Alu -92 220 1 2167 129 0 29 chr9 37154389 37154700 -80707927 + AluSx SINE Alu 1 302 -10 239 261 23 11 chr9 37154803 37154891 -80707736 - L2 LINE L2 -1903 1411 1323 2187 120 0 0 chr9 37154920 37155235 -80707392 + AluSx SINE Alu 1 312 0 341 313 70 0 chr9 37155465 37155593 -80707034 - L2 LINE L2 -257 3056 2920 559 57 0 0 chr9 37155667 37155737 -80706890 - AluS SINE Alu -235 77 8 1245 133 9 44 chr9 37155737 37155962 -80706665 + AluSq SINE Alu 86 302 -11 275 348 28 21 chr9 37156316 37156457 -80706170 - L2 LINE L2 -9 3263 3122 541 146 5 160 chr9 37156809 37156882 -80705745 - MER104 DNA MER2_type -1722 176 93 1825 153 48 3 chr9 37156882 37157176 -80705451 + AluJb SINE Alu 2 308 -4 541 146 5 160 chr9 37157176 37157272 -80705355 - MER104 DNA MER2_type -1805 93 42 2168 103 17 0 chr9 37157272 37157564 -80705063 + AluSx SINE Alu 10 306 -6 541 146 5 160 chr9 37157564 37157599 -80705028 - MER104 DNA MER2_type -1856 42 3 227 245 283 0 chr9 37157602 37157708 -80704919 - MIR SINE MIR -6 256 121 1818 167 0 23 chr9 37158163 37158468 -80704159 + AluJb SINE Alu 1 298 -14 195 42 0 0 chr9 37159386 37159410 -80703217 + (TTTTTG)n Simple_repeat Simple_repeat 5 28 0 1534 196 16 19 chr9 37159471 37159783 -80702844 + AluJb SINE Alu 1 311 -1 260 211 78 33 chr9 37160049 37160139 -80702488 + MIR SINE MIR 68 161 -101 2109 127 16 0 chr9 37160211 37160518 -80702109 + AluSx SINE Alu 1 312 0 852 197 27 69 chr9 37160535 37160723 -80701904 + LTR8A LTR ERV1 548 727 0 204 67 0 0 chr9 37161095 37161125 -80701502 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 6383 110 43 22 chr9 37161127 37163421 -80699206 - SVA Other Other -518 1383 3 306 220 30 0 chr9 37163437 37163537 -80699090 + GA-rich Low_complexity Low_complexity 1 103 0 1915 160 10 3 chr9 37164294 37164601 -80698026 + AluSx SINE Alu 1 309 -3 1389 148 0 5 chr9 37164610 37164826 -80697801 + MER4D LTR ERV1 10 224 -679 1432 160 12 4 chr9 37164852 37165096 -80697531 + MER4D LTR ERV1 441 686 -217 2566 141 7 32 chr9 37165103 37165506 -80697121 - LTR9 LTR ERV1 0 612 220 35343 118 93 90 chr9 37165588 37168322 -80694305 - HUERS-P3b LTR ERV1 -473 6945 4222 2389 99 0 3 chr9 37168322 37168626 -80694001 - AluSp SINE Alu -10 303 1 35343 118 93 90 chr9 37168626 37169612 -80693015 - HUERS-P3b LTR ERV1 -3196 4222 3241 2165 105 27 0 chr9 37169612 37169907 -80692720 - AluSx SINE Alu -9 303 1 35343 118 93 90 chr9 37169907 37172022 -80690605 - HUERS-P3b LTR ERV1 -4177 3241 1080 2366 89 0 35 chr9 37172022 37172335 -80690292 + AluSg SINE Alu 1 302 -8 35343 118 93 90 chr9 37172335 37173398 -80689229 - HUERS-P3b LTR ERV1 -6338 1080 22 3590 123 69 22 chr9 37173425 37174004 -80688623 - LTR9 LTR ERV1 -6 606 1 1412 87 78 5 chr9 37174012 37174218 -80688409 + MER4D LTR ERV1 652 872 0 242 190 52 35 chr9 37174489 37174547 -80688080 - 7SK RNA RNA -118 75 17 186 189 0 0 chr9 37174621 37174658 -80687969 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1818 186 0 0 chr9 37175420 37175726 -80686901 - AluJo SINE Alu -6 306 1 2087 148 0 0 chr9 37175860 37176163 -80686464 - AluSx SINE Alu -9 303 1 2077 135 130 18 chr9 37176230 37176615 -80686012 + MSTA LTR MaLR 1 428 0 2200 155 58 22 chr9 37176776 37177189 -80685438 + MSTA LTR MaLR 1 428 0 2018 142 3 0 chr9 37177189 37177512 -80685115 + MSTA-int LTR MaLR 1 324 -1327 29978 44 7 6 chr9 37177516 37181449 -80681178 - L1PA5 LINE L1 0 6154 2214 2515 70 0 0 chr9 37181449 37181747 -80680880 - AluY SINE Alu -13 298 1 29978 44 7 6 chr9 37181747 37182264 -80680363 - L1PA5 LINE L1 -3940 2214 1699 7691 168 27 8 chr9 37182266 37183579 -80679048 + MSTA-int LTR MaLR 315 1651 0 2277 136 97 0 chr9 37183579 37183969 -80678658 + MSTA LTR MaLR 1 428 0 2567 172 8 30 chr9 37184013 37184537 -80678090 - L1MB7 LINE L1 -1 6183 5672 1698 153 6 53 chr9 37184557 37184878 -80677749 + AluJb SINE Alu 1 306 -6 3313 171 117 60 chr9 37184878 37185254 -80677373 - L1MB5 LINE L1 -9 6165 5812 2345 96 0 0 chr9 37185254 37185546 -80677081 + AluSc SINE Alu 6 297 -12 3313 171 117 60 chr9 37185546 37185913 -80676714 - L1MB5 LINE L1 -362 5812 5467 1472 161 0 117 chr9 37185913 37186134 -80676493 - AluJo SINE Alu 0 302 133 324 0 0 0 chr9 37186134 37186170 -80676457 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1472 161 0 117 chr9 37186170 37186290 -80676337 - AluJo SINE Alu -169 133 1 3313 171 117 60 chr9 37186290 37186662 -80675965 - L1MB5 LINE L1 -707 5467 4964 2765 89 38 33 chr9 37187066 37187492 -80675135 - MSTA LTR MaLR 0 428 1 211 71 0 0 chr9 37187711 37187739 -80674888 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2013 136 4 0 chr9 37187739 37188019 -80674608 - AluSx SINE Alu -1 308 1 2050 136 3 3 chr9 37188046 37188333 -80674294 - AluSx SINE Alu -25 287 1 785 175 0 0 chr9 37188615 37188741 -80673886 + AluJ SINE Alu 2 127 -175 891 228 0 0 chr9 37188904 37189097 -80673530 - MER3 DNA MER1_type -5 204 12 2280 105 0 0 chr9 37189186 37189480 -80673147 - AluSx SINE Alu -18 294 1 652 177 15 23 chr9 37189559 37189689 -80672938 - FLAM_A SINE Alu -3 130 2 675 298 107 9 chr9 37190056 37190382 -80672245 - L1MC4a LINE L1 -1941 5867 5510 538 165 0 0 chr9 37190468 37190559 -80672068 + AluJ SINE Alu 134 224 -88 * 699 149 0 0 chr9 37190550 37190657 -80671970 - AluJb SINE Alu -201 111 5 2030 150 0 0 chr9 37190947 37191241 -80671386 + AluSx SINE Alu 1 294 -18 474 260 40 6 chr9 37191286 37191463 -80671164 + L1MEd LINE L1 19 201 -5918 416 238 143 0 chr9 37191573 37191701 -80670926 + MIR SINE MIR 47 189 -62 260 219 61 24 chr9 37191709 37191791 -80670836 - MIR SINE MIR -3 259 175 1554 197 0 51 chr9 37191793 37192168 -80670459 + MLT1A2 LTR MaLR 6 361 -13 771 257 152 75 chr9 37192198 37192802 -80669825 + L1MEd LINE L1 238 933 -5186 1981 157 3 0 chr9 37192802 37193096 -80669531 + AluSx SINE Alu 1 295 -17 771 257 152 75 chr9 37193096 37193373 -80669254 + L1MEd LINE L1 933 1187 -4932 562 224 35 0 chr9 37193542 37193658 -80668969 + L2 LINE L2 3193 3312 -1 1843 157 20 3 chr9 37193788 37194081 -80668546 + AluJb SINE Alu 9 306 -6 545 270 46 77 chr9 37194520 37194909 -80667718 + L1M4 LINE L1 3613 3989 -2157 1320 218 38 48 chr9 37194921 37195293 -80667334 + L1MDa LINE L1 45 412 -6128 750 128 192 2 chr9 37195325 37195516 -80667111 + L1MDa LINE L1 2420 2621 -3919 1085 207 90 10 chr9 37195518 37195808 -80666819 + L1MD2 LINE L1 5831 6143 -216 344 211 58 0 chr9 37195816 37195920 -80666707 + L1MD2 LINE L1 6210 6319 -40 372 236 0 115 chr9 37196241 37196338 -80666289 + L1M4 LINE L1 4012 4084 -2062 2479 52 13 3 chr9 37196338 37196644 -80665983 - AluY SINE Alu -1 310 2 372 236 0 115 chr9 37196644 37196711 -80665916 + L1M4 LINE L1 4084 4157 -1989 1587 172 90 0 chr9 37196718 37196986 -80665641 + AluJb SINE Alu 1 292 -20 24 32 0 0 chr9 37197255 37197286 -80665341 + AT_rich Low_complexity Low_complexity 1 31 0 923 262 145 0 chr9 37197403 37197651 -80664976 - AluJb SINE Alu -16 286 3 2449 90 3 0 chr9 37197693 37198005 -80664622 - AluSp SINE Alu 0 313 1 1276 129 0 0 chr9 37198421 37198592 -80664035 + AluJb SINE Alu 131 301 -11 290 246 49 0 chr9 37198883 37199005 -80663622 - L1M4 LINE L1 -1088 5058 4931 5163 105 57 5 chr9 37199107 37199961 -80662666 - L1MA3 LINE L1 0 6305 5407 1336 178 8 23 chr9 37200111 37200370 -80662257 - AluJb SINE Alu -57 255 1 2806 190 25 92 chr9 37200376 37201435 -80661192 - L1M4 LINE L1 -786 5360 4373 341 197 30 61 chr9 37201436 37201568 -80661059 - LTR48 LTR ERV1 -74 713 586 5817 143 53 6 chr9 37201573 37203558 -80659069 - L1MA4A LINE L1 -7 6296 4227 242 303 0 0 chr9 37203558 37203624 -80659003 + MER61B LTR ERV1 176 241 -184 443 136 4 1 chr9 37203624 37203702 -80658925 - L1 LINE L1 -1986 4160 4081 2179 163 5 16 chr9 37203705 37204142 -80658485 + L1 LINE L1 3664 4095 -2051 1901 156 20 0 chr9 37204153 37204455 -80658172 - AluSx SINE Alu -4 308 1 1799 254 114 2 chr9 37204462 37205048 -80657579 - L1M4b LINE L1 -5189 2020 1369 419 222 0 0 chr9 37205048 37205129 -80657498 - MER20 DNA MER1_type -48 171 91 669 168 35 28 chr9 37205129 37205272 -80657355 + MER5A DNA MER1_type 46 189 0 1637 187 42 55 chr9 37205314 37205354 -80657273 - MLT2A2 LTR ERVL 0 554 515 261 57 0 0 chr9 37205354 37205389 -80657238 + (TG)n Simple_repeat Simple_repeat 1 35 0 1637 187 42 55 chr9 37205389 37205902 -80656725 - MLT2A2 LTR ERVL -39 515 13 269 285 73 32 chr9 37206127 37206250 -80656377 + L3 LINE CR1 1346 1473 -104 240 250 0 0 chr9 37207032 37207080 -80655547 + MIR SINE MIR 93 140 -68 1933 178 0 3 chr9 37207298 37207602 -80655025 - AluJo SINE Alu -9 303 1 450 318 143 15 chr9 37207784 37208127 -80654500 - L2 LINE L2 -958 2356 1970 1803 169 13 26 chr9 37209232 37209540 -80653087 - AluJb SINE Alu -8 304 1 1843 131 62 0 chr9 37210578 37210853 -80651774 - AluSx SINE Alu -20 292 1 1193 152 52 45 chr9 37211121 37211390 -80651237 - L1MA10 LINE L1 -19 6315 6045 23 33 0 0 chr9 37212952 37212982 -80649645 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr9 37213314 37213349 -80649278 + AT_rich Low_complexity Low_complexity 1 35 0 553 267 76 28 chr9 37213597 37213668 -80648959 - L1MC4a LINE L1 -338 5783 5717 2082 139 10 7 chr9 37213668 37213978 -80648649 - AluSx SINE Alu -1 311 1 553 267 76 28 chr9 37213978 37214253 -80648374 - L1MC4a LINE L1 -404 5717 5497 226 229 0 59 chr9 37214280 37214307 -80648320 + T-rich Low_complexity Low_complexity 4 31 -83 6712 115 27 17 chr9 37214307 37215367 -80647260 - MER11C LTR ERVK 0 1071 1 226 229 0 59 chr9 37215367 37215457 -80647170 + T-rich Low_complexity Low_complexity 31 114 0 764 176 0 0 chr9 37215642 37215784 -80646843 - L1M4b LINE L1 -6631 479 338 2240 110 0 10 chr9 37215894 37216193 -80646434 + AluSg SINE Alu 1 296 -14 536 221 33 61 chr9 37216195 37216376 -80646251 - MIR SINE MIR 0 262 87 287 241 58 0 chr9 37216414 37216501 -80646126 - L1ME LINE L1 -342 5779 5688 351 0 0 0 chr9 37216678 37216717 -80645910 + (CA)n Simple_repeat Simple_repeat 1 39 0 286 211 37 46 chr9 37216723 37216832 -80645795 - L1MC4a LINE L1 -1874 5934 5827 268 140 0 0 chr9 37216872 37216922 -80645705 - L1MC4a LINE L1 -1984 5824 5775 3285 142 19 2 chr9 37217571 37218143 -80644484 - L1MB2 LINE L1 -2 6169 5588 459 323 28 23 chr9 37218236 37218423 -80644204 + MIR SINE MIR 3 188 -64 336 336 163 27 chr9 37219224 37219665 -80642962 - L2 LINE L2 -978 2336 1836 1309 201 101 90 chr9 37219671 37220128 -80642499 - MLT1C LTR MaLR 0 467 6 2181 31 0 4 chr9 37220638 37220899 -80641728 - L1PA5 LINE L1 -3 6151 5892 28803 42 1 1 chr9 37220999 37225043 -80637584 - L1PA5 LINE L1 -476 5678 1633 432 162 34 77 chr9 37225113 37225230 -80637397 - L1MB8 LINE L1 -1 6177 6066 3288 167 48 31 chr9 37225323 37226059 -80636568 - L1MB8 LINE L1 -1 6177 5430 2300 63 0 3 chr9 37226128 37226413 -80636214 - AluY SINE Alu -7 304 21 1961 136 3 3 chr9 37226517 37226811 -80635816 + AluSx SINE Alu 1 294 -18 480 259 59 16 chr9 37226812 37227067 -80635560 - L1MC5 LINE L1 -196 7765 7500 880 143 8 0 chr9 37227070 37227203 -80635424 - AluJb SINE Alu -178 134 1 459 251 78 94 chr9 37227242 37227535 -80635092 - L1MC5 LINE L1 -516 7445 7149 1538 148 109 7 chr9 37227535 37227818 -80634809 - AluSx SINE Alu 0 312 1 459 251 78 94 chr9 37227818 37227886 -80634741 - L1MC5 LINE L1 -812 7149 7081 2306 56 0 0 chr9 37227886 37228156 -80634471 + AluY SINE Alu 27 296 -15 459 251 78 94 chr9 37228156 37228295 -80634332 - L1MC5 LINE L1 -880 7081 6952 1267 197 0 0 chr9 37228361 37228569 -80634058 - AluJo SINE Alu -20 292 85 236 279 0 0 chr9 37228576 37228644 -80633983 - L1MC4a LINE L1 -891 6917 6850 311 313 9 26 chr9 37228652 37228767 -80633860 - L1MC4 LINE L1 0 8042 7930 488 287 144 15 chr9 37228899 37229233 -80633394 - L1ME LINE L1 -382 5788 5412 422 209 139 47 chr9 37229249 37229421 -80633206 - L2 LINE L2 0 3313 3126 1847 165 58 9 chr9 37229429 37229775 -80632852 - MLT1A1 LTR MaLR -2 363 1 562 55 102 0 chr9 37230077 37230315 -80632312 + (TA)n Simple_repeat Simple_repeat 1 262 0 486 198 66 25 chr9 37230315 37230436 -80632191 - FLAM_C SINE Alu -7 126 1 1204 133 29 151 chr9 37230450 37230568 -80632059 - L1MC3 LINE L1 0 7785 7654 3019 157 36 79 chr9 37230568 37231288 -80631339 - LTR8 LTR ERV1 0 691 3 1204 133 29 151 chr9 37231288 37231552 -80631075 - L1MC3 LINE L1 -131 7654 7450 787 268 74 9 chr9 37231566 37231891 -80630736 - L1ME LINE L1 -2005 4141 3796 217 284 0 37 chr9 37231898 37231979 -80630648 + (CATATA)n Simple_repeat Simple_repeat 5 82 0 279 257 4 26 chr9 37231979 37232095 -80630532 - L1ME LINE L1 -2369 3777 3659 904 81 0 0 chr9 37232388 37232499 -80630128 + AluSx SINE Alu 1 111 -201 446 194 16 0 chr9 37232506 37232630 -80629997 + (TA)n Simple_repeat Simple_repeat 1 126 0 1322 125 0 0 chr9 37232630 37232822 -80629805 + AluSx SINE Alu 119 310 0 524 277 141 0 chr9 37233059 37233243 -80629384 + L2 LINE L2 2591 2800 -514 366 247 0 0 chr9 37233246 37233319 -80629308 + L2 LINE L2 3241 3313 0 201 322 0 58 chr9 37233340 37233427 -80629200 - MIR SINE MIR -95 113 32 242 378 98 47 chr9 37234515 37234811 -80627816 + L2 LINE L2 2960 3270 -2 189 0 0 0 chr9 37234978 37234999 -80627628 + (TG)n Simple_repeat Simple_repeat 2 22 0 1550 167 0 30 chr9 37235160 37235451 -80627176 + AluJo SINE Alu 29 311 0 703 287 27 31 chr9 37235452 37235713 -80626914 - MIR SINE MIR -1 261 2 513 187 56 173 chr9 37236283 37236692 -80625935 - L1MC4 LINE L1 0 8042 7697 4276 96 14 8 chr9 37236692 37237327 -80625300 - L1MA3 LINE L1 0 6305 5667 513 187 56 173 chr9 37237327 37237403 -80625224 - L1MC4 LINE L1 -345 7697 7614 401 131 37 37 chr9 37237403 37237510 -80625117 + CT-rich Low_complexity Low_complexity 5 111 0 2023 157 3 6 chr9 37237518 37237830 -80624797 - AluSx SINE Alu -1 311 1 21 0 0 0 chr9 37237838 37237859 -80624768 + AT_rich Low_complexity Low_complexity 1 21 0 1917 154 0 7 chr9 37237861 37238153 -80624474 + AluJb SINE Alu 1 290 -22 1739 161 13 7 chr9 37238325 37238623 -80624004 - AluSx SINE Alu -12 300 1 348 253 0 0 chr9 37238624 37238699 -80623928 - L1ME LINE L1 -613 5553 5479 213 213 0 0 chr9 37238701 37238748 -80623879 + CT-rich Low_complexity Low_complexity 2 48 0 450 223 33 33 chr9 37238861 37238982 -80623645 - L2 LINE L2 0 3313 3193 * 886 306 78 45 chr9 37238974 37239526 -80623101 + L2 LINE L2 2218 2787 -527 603 299 113 14 chr9 37240664 37240885 -80621742 - MIR SINE MIR 0 262 20 2180 116 3 0 chr9 37240885 37241179 -80621448 + AluSx SINE Alu 1 295 -17 1193 193 67 0 chr9 37243189 37243412 -80619215 + MER8 DNA MER2_type 1 238 -1 1309 191 76 39 chr9 37243473 37243829 -80618798 + MLT1A2 LTR MaLR 1 369 -5 2442 199 9 11 chr9 37243834 37244376 -80618251 + MLT1A2-int LTR MaLR 1 541 -830 278 244 33 11 chr9 37244429 37244519 -80618108 + MLT1A2-int LTR MaLR 676 767 -968 1896 183 25 8 chr9 37244581 37244979 -80617648 + MLT1A2-int LTR MaLR 1331 1735 0 1476 204 30 28 chr9 37244982 37245344 -80617283 + MLT1A2 LTR MaLR 4 366 -8 695 182 15 23 chr9 37245482 37245614 -80617013 + FLAM_C SINE Alu 1 131 -12 1716 129 82 18 chr9 37245649 37245928 -80616699 - AluSx SINE Alu -13 299 3 382 294 59 13 chr9 37245930 37246083 -80616544 + MIR3 SINE MIR 44 203 -5 882 115 0 23 chr9 37246245 37246375 -80616252 + FLAM_C SINE Alu 1 127 -6 266 54 0 0 chr9 37247277 37247314 -80615313 - L1PA7 LINE L1 -10 6144 6108 2112 104 0 0 chr9 37248164 37248434 -80614193 + AluY SINE Alu 1 270 -41 278 113 0 38 chr9 37248534 37248587 -80614040 - L1MC4 LINE L1 -517 7525 7475 739 247 34 11 chr9 37248591 37248854 -80613773 - L1MC4 LINE L1 -633 7409 7141 2593 232 23 60 chr9 37248916 37249689 -80612938 - MER21B LTR ERV1 -107 756 12 1482 226 31 19 chr9 37249719 37250143 -80612484 - L1MC4 LINE L1 -911 7131 6703 298 259 17 9 chr9 37250230 37250346 -80612281 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 233 227 0 82 chr9 37250590 37250687 -80611940 - L1MC4a LINE L1 -172 7636 7548 * 458 187 22 82 chr9 37250673 37250761 -80611866 - L1M4 LINE L1 -1164 4982 4903 2387 93 0 3 chr9 37250761 37251061 -80611566 + AluSc SINE Alu 1 299 -10 458 187 22 82 chr9 37251061 37251106 -80611521 - L1M4 LINE L1 -1243 4903 4857 369 239 210 21 chr9 37251804 37252150 -80610477 + L1ME4a LINE L1 5613 6053 -68 2440 100 0 0 chr9 37252150 37252460 -80610167 - AluSx SINE Alu -2 310 1 369 239 210 21 chr9 37252460 37252532 -80610095 + L1ME4a LINE L1 6053 6110 -11 826 137 8 8 chr9 37254145 37254276 -80608351 - FLAM_C SINE Alu -2 131 1 197 319 1 62 chr9 37255084 37255166 -80607461 - MIR SINE MIR -133 75 5 2001 136 14 0 chr9 37255506 37255793 -80606834 - AluSq SINE Alu -22 291 1 2015 158 0 7 chr9 37255926 37256229 -80606398 + AluJb SINE Alu 1 301 -11 25 0 0 0 chr9 37256674 37256699 -80605928 + AT_rich Low_complexity Low_complexity 1 25 0 2839 154 28 9 chr9 37258935 37259475 -80603152 - L1MB5 LINE L1 0 6174 5625 638 239 45 57 chr9 37259475 37259722 -80602905 - L1MC4 LINE L1 -2054 5754 5511 2132 69 0 8 chr9 37260910 37261171 -80601456 + AluSc SINE Alu 39 297 -12 950 147 38 0 chr9 37261171 37261328 -80601299 + AluSg/x SINE Alu 134 296 -16 254 295 42 84 chr9 37261346 37261512 -80601115 - L2 LINE L2 -92 3180 3022 876 184 30 0 chr9 37261516 37261684 -80600943 - L1MC1 LINE L1 -185 6148 5976 316 342 83 50 chr9 37261684 37261981 -80600646 - L2 LINE L2 -250 3022 2712 251 232 10 50 chr9 37262105 37262204 -80600423 - L1ME3A LINE L1 -114 6056 5962 215 31 31 0 chr9 37262317 37262349 -80600278 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2079 101 0 14 chr9 37262355 37262631 -80599996 - AluSx SINE Alu -37 275 4 463 221 4 111 chr9 37262634 37262869 -80599758 - L1MC5 LINE L1 -435 7526 7317 319 254 37 37 chr9 37262879 37263013 -80599614 - L1ME3A LINE L1 -319 5802 5669 268 323 30 0 chr9 37263232 37263331 -80599296 - L1ME3A LINE L1 -2166 5642 5541 672 258 159 30 chr9 37263433 37263766 -80598861 - L2 LINE L2 -5 3308 2933 426 224 48 55 chr9 37263767 37263877 -80598750 + L1ME3A LINE L1 5995 6105 -65 2194 116 0 19 chr9 37263877 37264187 -80598440 + AluSx SINE Alu 1 304 -8 426 224 48 55 chr9 37264187 37264241 -80598386 + L1ME3A LINE L1 6105 6158 -12 358 333 15 0 chr9 37264319 37264517 -80598110 - L1ME3A LINE L1 -2262 3884 3684 21 0 0 0 chr9 37265616 37265637 -80596990 + AT_rich Low_complexity Low_complexity 1 21 0 2162 142 3 0 chr9 37266054 37266357 -80596270 + AluSx SINE Alu 1 304 -8 25 51 0 0 chr9 37266740 37266779 -80595848 + AT_rich Low_complexity Low_complexity 1 39 0 2205 116 3 0 chr9 37269486 37269780 -80592847 - AluSx SINE Alu -17 295 1 26 30 0 0 chr9 37271551 37271584 -80591043 + AT_rich Low_complexity Low_complexity 1 33 0 2355 216 40 53 chr9 37271783 37272265 -80590362 - L1MC4 LINE L1 -11 8031 7544 2111 116 14 0 chr9 37272265 37272559 -80590068 - AluSx SINE Alu -14 298 1 2355 216 40 53 chr9 37272559 37272716 -80589911 - L1MC4 LINE L1 -498 7544 7386 2574 49 0 0 chr9 37272716 37273023 -80589604 - AluY SINE Alu -4 307 1 2355 216 40 53 chr9 37273023 37273235 -80589392 - L1MC4 LINE L1 -656 7386 7190 1839 172 0 7 chr9 37273311 37273596 -80589031 + AluJb SINE Alu 1 283 -29 753 167 0 0 chr9 37273674 37273794 -80588833 - FLAM_C SINE Alu -13 120 1 2196 109 0 3 chr9 37274123 37274416 -80588211 + AluSq SINE Alu 1 292 -21 378 0 0 0 chr9 37284397 37284439 -80578188 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 269 118 65 chr9 37284913 37285006 -80577621 + L2 LINE L2 3028 3125 -147 197 154 103 0 chr9 37285069 37285108 -80577519 - MIR SINE MIR -101 161 119 197 250 62 0 chr9 37285082 37285130 -80577497 - MIR SINE MIR -63 145 95 1716 156 49 3 chr9 37286158 37286446 -80576181 - AluJb SINE Alu -11 301 1 848 157 108 16 chr9 37287121 37287306 -80575321 - MER20 DNA MER1_type 0 219 18 1945 144 0 0 chr9 37288522 37288800 -80573827 + AluJb SINE Alu 6 334 0 460 0 0 0 chr9 37288800 37288851 -80573776 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1548 152 37 0 chr9 37289722 37289965 -80572662 - L1PB4 LINE L1 -1 6155 5904 809 119 0 70 chr9 37289984 37290049 -80572578 - L1PB4 LINE L1 -365 5791 5740 1639 164 25 47 chr9 37290049 37290366 -80572261 - AluJo SINE Alu -2 310 1 809 119 0 70 chr9 37290366 37290443 -80572184 - L1PB4 LINE L1 -416 5740 5659 286 139 0 0 chr9 37290456 37290499 -80572128 + Charlie7 DNA MER1_type 1666 1708 -904 3247 247 74 18 chr9 37290535 37291554 -80571073 - L1MC3 LINE L1 -2 8040 6977 1082 232 128 36 chr9 37291557 37292319 -80570308 + Charlie7 DNA MER1_type 1718 2584 -28 1871 158 0 32 chr9 37292375 37292685 -80569942 - AluJo SINE Alu -12 300 1 2170 116 0 44 chr9 37292693 37293011 -80569616 - AluSx SINE Alu -8 304 1 194 239 56 42 chr9 37293491 37293562 -80569065 - L2 LINE L2 -802 2512 2441 1068 219 176 28 chr9 37293611 37294003 -80568624 - L1MC3 LINE L1 -1793 6015 5566 844 271 47 94 chr9 37294011 37294288 -80568339 - MLT1I LTR MaLR -58 351 88 231 176 0 0 chr9 37294331 37294365 -80568262 + Alu SINE Alu 1 34 -266 1774 116 0 4 chr9 37294365 37294607 -80568020 + AluSg/x SINE Alu 72 312 0 1164 144 62 0 chr9 37294611 37294819 -80567808 - L1PA16 LINE L1 -23 6143 5923 2665 108 27 87 chr9 37294922 37295045 -80567582 - L1PA16 LINE L1 -121 6045 5916 1718 159 7 14 chr9 37295045 37295335 -80567292 - AluJo SINE Alu -8 304 17 2665 108 27 87 chr9 37295335 37295363 -80567264 - L1PA16 LINE L1 -250 5916 5605 612 231 42 145 chr9 37295363 37295888 -80566739 - L1MC4a LINE L1 -1886 5922 5452 291 308 29 29 chr9 37295954 37296058 -80566569 + L2 LINE L2 2927 3030 -283 445 258 181 40 chr9 37296409 37296609 -80566018 - L1ME4a LINE L1 -151 5970 5800 1831 161 40 0 chr9 37296609 37296907 -80565720 - AluJo SINE Alu -2 310 1 445 258 181 40 chr9 37296907 37297032 -80565595 - L1ME4a LINE L1 -321 5800 5599 669 218 0 41 chr9 37297044 37297191 -80565436 - FLAM_C SINE Alu -2 141 1 436 268 145 25 chr9 37297193 37297428 -80565199 - L1ME4a LINE L1 -503 5618 5356 31 76 0 0 chr9 37298356 37298422 -80564205 + AT_rich Low_complexity Low_complexity 1 66 0 289 213 4 209 chr9 37298558 37298788 -80563839 - L1MC/D LINE L1 -307 5814 5727 369 315 203 20 chr9 37299044 37299339 -80563288 + L2 LINE L2 328 676 -2638 724 274 54 17 chr9 37299351 37299592 -80563035 - MIR SINE MIR -1 261 12 516 225 17 69 chr9 37299672 37299845 -80562782 + MER103 DNA DNA 2 165 -1 658 327 153 8 chr9 37299925 37300396 -80562231 + L2 LINE L2 1866 2404 -910 185 174 0 87 chr9 37300546 37300592 -80562035 + L2 LINE L2 3271 3312 -1 1756 144 27 20 chr9 37300970 37301669 -80560958 - L1MB7 LINE L1 -19 6165 5341 1583 131 141 58 chr9 37301669 37301801 -80560826 - MER44D DNA MER2_type -1883 608 488 1502 173 58 25 chr9 37301801 37302079 -80560548 - AluJo SINE Alu -25 287 1 1583 131 141 58 chr9 37302079 37302258 -80560369 - MER44D DNA MER2_type -2003 488 1 1756 144 27 20 chr9 37302258 37302430 -80560197 - L1MB7 LINE L1 -843 5341 5172 2180 198 52 68 chr9 37302587 37303149 -80559478 - MLT2B3 LTR ERVL 0 554 2 2282 104 0 16 chr9 37303397 37303714 -80558913 - AluSx SINE Alu 0 312 1 927 65 24 36 chr9 37303989 37304157 -80558470 + (TTCC)n Simple_repeat Simple_repeat 1 166 0 2302 74 7 14 chr9 37304164 37304461 -80558166 - AluY SINE Alu -16 295 1 1898 149 16 117 chr9 37304539 37304882 -80557745 + MLT1B LTR MaLR 5 298 -92 1861 142 0 4 chr9 37304882 37305156 -80557471 - AluJo SINE Alu -16 296 24 1898 149 16 117 chr9 37305156 37305241 -80557386 + MLT1B LTR MaLR 298 390 0 1893 142 7 0 chr9 37306618 37306936 -80555691 - AluSx SINE Alu 0 321 2 1544 120 139 15 chr9 37307381 37307640 -80554987 - AluSg1 SINE Alu -18 291 1 278 243 27 27 chr9 37308112 37308186 -80554441 + L2 LINE L2 3010 3083 -189 825 200 104 42 chr9 37308281 37308541 -80554086 + L1ME3A LINE L1 5894 6169 -1 204 200 0 0 chr9 37308802 37308837 -80553790 + (TGAG)n Simple_repeat Simple_repeat 1 35 0 366 287 181 32 chr9 37308896 37309084 -80553543 + MIR SINE MIR 40 255 -7 199 376 13 13 chr9 37309099 37309248 -80553379 + L2 LINE L2 2907 3055 -217 2355 112 0 0 chr9 37309510 37309823 -80552804 - AluSq SINE Alu 0 313 1 189 278 14 56 chr9 37310222 37310294 -80552333 + L2 LINE L2 3199 3267 -5 2379 72 3 10 chr9 37310312 37310619 -80552008 + AluSq SINE Alu 1 305 -8 279 320 130 28 chr9 37311236 37311252 -80551375 + L2 LINE L2 2049 2062 -1252 1578 159 23 55 chr9 37311252 37311560 -80551067 - AluJo SINE Alu -14 298 1 279 320 130 28 chr9 37311560 37311865 -80550762 + L2 LINE L2 2062 2403 -911 226 326 0 0 chr9 37311946 37311992 -80550635 + L2 LINE L2 3141 3186 -86 814 172 0 64 chr9 37312042 37312199 -80550428 - AluJb SINE Alu 0 312 166 1053 131 4 72 chr9 37312200 37312387 -80550240 - MLT1A1 LTR MaLR -188 177 1 246 317 34 91 chr9 37312665 37312873 -80549754 - L2 LINE L2 -562 2752 2557 271 186 51 0 chr9 37316296 37316355 -80546272 + MER117 DNA MER1_type 44 105 -92 206 338 13 0 chr9 37317165 37317242 -80545385 + GA-rich Low_complexity Low_complexity 4 81 0 22 0 0 0 chr9 37317849 37317871 -80544756 + AT_rich Low_complexity Low_complexity 1 22 0 285 75 0 0 chr9 37318452 37318492 -80544135 + (GA)n Simple_repeat Simple_repeat 1 40 0 561 187 91 91 chr9 37318642 37318829 -80543798 + MIR SINE MIR 20 206 -56 1558 169 63 3 chr9 37319314 37319616 -80543011 + MER33 DNA MER1_type 5 324 0 242 292 21 0 chr9 37319988 37320036 -80542591 + MIR SINE MIR 35 83 -125 255 276 41 102 chr9 37320053 37320151 -80542476 - L2 LINE L2 -25 3288 3197 207 0 0 0 chr9 37320451 37320474 -80542153 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 381 239 43 33 chr9 37320480 37320572 -80542055 - L2 LINE L2 -43 3229 3137 1805 175 67 94 chr9 37320745 37321224 -80541403 - MER31B LTR ERV1 0 466 1 1602 152 93 0 chr9 37322474 37322744 -80539883 - AluJo SINE Alu -4 308 14 988 67 8 0 chr9 37323513 37323632 -80538995 + AluSp SINE Alu 1 120 -193 226 0 0 56 chr9 37323632 37323668 -80538959 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 397 231 141 16 chr9 37324299 37324420 -80538207 - MIR3 SINE MIR -59 149 14 2281 93 7 0 chr9 37324484 37324773 -80537854 - AluSg SINE Alu -19 291 1 1585 238 92 43 chr9 37330277 37330932 -80531695 + L1MC4a LINE L1 5463 6149 -1659 184 349 86 33 chr9 37331131 37331283 -80531344 + L2 LINE L2 2889 3048 -224 207 179 26 0 chr9 37331943 37331982 -80530645 - MIR SINE MIR -25 237 198 478 273 77 7 chr9 37331995 37332138 -80530489 + L2 LINE L2 1843 1995 -1319 5021 140 48 14 chr9 37332138 37333130 -80529497 - L1MB7 LINE L1 0 6184 5158 22 0 0 0 chr9 37333136 37333158 -80529469 + AT_rich Low_complexity Low_complexity 1 22 0 897 152 8 0 chr9 37333163 37333295 -80529332 + FLAM_C SINE Alu 1 133 -10 3732 139 31 85 chr9 37333299 37334077 -80528550 - L1MB3 LINE L1 -3 6180 5445 1757 204 20 10 chr9 37334075 37334248 -80528379 - L1MB7 LINE L1 -974 5172 5002 * 2215 100 3 19 chr9 37334248 37334557 -80528070 - AluSq SINE Alu -9 304 1 1757 204 20 10 chr9 37334557 37334780 -80527847 - L1MB7 LINE L1 -1144 5002 4772 2570 258 85 34 chr9 37334780 37335845 -80526782 + L2 LINE L2 1990 3168 -145 525 300 152 5 chr9 37335849 37336059 -80526568 + MIR SINE MIR 21 261 -1 344 198 58 107 chr9 37336073 37336194 -80526433 + L2 LINE L2 3172 3286 -27 1501 147 6 97 chr9 37336217 37336536 -80526091 - AluJo SINE Alu -22 290 1 382 264 264 7 chr9 37337635 37337945 -80524682 - L2 LINE L2 -635 2679 2290 2432 62 31 0 chr9 37338085 37338377 -80524250 + AluY SINE Alu 1 301 -10 252 291 103 17 chr9 37341419 37341536 -80521091 + L2 LINE L2 3107 3233 -39 276 250 194 65 chr9 37342446 37342629 -80519998 + MIR SINE MIR 16 216 -46 392 214 22 11 chr9 37342729 37342818 -80519809 - L2 LINE L2 -8 3305 3216 480 312 64 6 chr9 37342881 37343038 -80519589 + MIR3 SINE MIR 23 188 -20 849 223 19 15 chr9 37343178 37343443 -80519184 - LTR37B LTR ERV1 -4 464 199 288 0 0 0 chr9 37343979 37344011 -80518616 + (TG)n Simple_repeat Simple_repeat 2 33 0 1698 166 24 0 chr9 37344408 37344534 -80518093 + AluSx SINE Alu 1 122 -190 396 0 0 0 chr9 37344534 37344578 -80518049 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1698 166 24 0 chr9 37344578 37344740 -80517887 + AluSx SINE Alu 122 296 -16 1994 90 10 14 chr9 37344932 37345221 -80517406 - AluY SINE Alu -4 307 20 464 292 15 15 chr9 37345517 37345647 -80516980 - L2 LINE L2 -4 3268 3139 1172 214 38 13 chr9 37345726 37345964 -80516663 + MIR SINE MIR 8 251 -11 2140 117 10 0 chr9 37346378 37346687 -80515940 - AluSx SINE Alu 0 312 1 1618 125 0 104 chr9 37347225 37347552 -80515075 - AluJb SINE Alu -19 293 1 2494 167 87 10 chr9 37347556 37348060 -80514567 - L1MB7 LINE L1 0 6184 5642 520 266 39 110 chr9 37348329 37348664 -80513963 + L1ME4a LINE L1 5798 6108 -13 531 167 10 0 chr9 37348895 37348997 -80513630 + L1MB8 LINE L1 6076 6178 0 1906 93 0 0 chr9 37349019 37349267 -80513360 + AluSx SINE Alu 1 248 -64 316 98 478 0 chr9 37349269 37349361 -80513266 - MER53 DNA DNA -53 136 1 185 280 80 60 chr9 37350221 37350321 -80512306 - L2 LINE L2 0 3313 3212 598 114 24 41 chr9 37350321 37350444 -80512183 - L1MA8 LINE L1 -2 6289 6169 985 261 63 44 chr9 37350447 37350857 -80511770 + L1PBa LINE L1 -15 402 -5802 6289 173 32 24 chr9 37350960 37352611 -80510016 + L1PBa LINE L1 4 1110 -5094 2149 95 0 20 chr9 37352611 37352915 -80509712 - AluSx SINE Alu -14 298 1 6289 173 32 24 chr9 37352915 37353471 -80509156 + L1PBa LINE L1 1110 1660 -4544 255 61 0 0 chr9 37353674 37353707 -80508920 + (TG)n Simple_repeat Simple_repeat 2 34 0 1704 89 20 0 chr9 37356404 37356652 -80505975 - L1MA3 LINE L1 0 6305 6053 4566 114 19 0 chr9 37357106 37357781 -80504846 - L1PA14 LINE L1 -1 6160 5473 240 307 50 30 chr9 37358405 37358506 -80504121 - MIR SINE MIR -59 149 47 945 102 31 0 chr9 37360312 37360521 -80502106 - FLAM_C SINE Alu 0 214 2 204 336 8 16 chr9 37360521 37360564 -80502063 + CT-rich Low_complexity Low_complexity 3 180 0 216 271 0 0 chr9 37360635 37360683 -80501944 + CT-rich Low_complexity Low_complexity 3 50 0 2066 99 0 7 chr9 37361032 37361338 -80501289 + AluSg SINE Alu 1 304 0 1780 153 13 0 chr9 37364741 37365042 -80497585 + AluSq SINE Alu 1 305 -8 1243 126 16 0 chr9 37365182 37365373 -80497254 + AluSg/x SINE Alu 110 303 -9 210 227 0 0 chr9 37367337 37367381 -80495246 + G-rich Low_complexity Low_complexity 1 44 0 1963 124 3 3 chr9 37368544 37368842 -80493785 + AluSx SINE Alu 7 304 -8 216 343 61 10 chr9 37368994 37369093 -80493534 - L2 LINE L2 -9 3304 3201 2212 93 0 3 chr9 37371935 37372236 -80490391 - AluSx SINE Alu -12 300 1 222 172 35 17 chr9 37377216 37377274 -80485353 + (TTG)n Simple_repeat Simple_repeat 2 60 0 304 377 24 18 chr9 37377323 37377490 -80485137 - L2 LINE L2 -208 3064 2897 2162 122 0 0 chr9 37377499 37377803 -80484824 + AluSx SINE Alu 1 304 -8 913 285 12 23 chr9 37377814 37378070 -80484557 + MIR SINE MIR 3 255 -7 255 335 226 14 chr9 37378000 37378358 -80484269 - L2 LINE L2 -357 2957 2524 * 530 310 85 10 chr9 37381391 37381591 -80481036 + MIR SINE MIR 46 260 -2 383 342 77 26 chr9 37381568 37381878 -80480749 - L2 LINE L2 -522 2792 2467 * 2219 23 0 4 chr9 37381920 37382177 -80480450 + L1PA3 LINE L1 5897 6152 -3 186 43 0 0 chr9 37382203 37382226 -80480401 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 469 248 107 7 chr9 37382260 37382409 -80480218 - L1ME1 LINE L1 -6 6160 5997 971 279 48 85 chr9 37382411 37382948 -80479679 - L2 LINE L2 -5 3267 2778 2053 105 24 0 chr9 37382948 37383244 -80479383 - AluSx SINE Alu -9 303 1 971 279 48 85 chr9 37383244 37383554 -80479073 - L2 LINE L2 -494 2778 2458 2029 122 0 0 chr9 37383687 37383983 -80478644 + AluSx SINE Alu 1 296 -16 200 206 0 0 chr9 37386972 37387006 -80475621 + polypyrimidine Low_complexity Low_complexity 2 35 0 321 200 40 60 chr9 37387304 37387404 -80475223 - L1MC5 LINE L1 -26 7935 7838 2417 80 0 3 chr9 37391643 37391955 -80470672 - AluY SINE Alu 0 311 1 10933 180 17 17 chr9 37394684 37395826 -80466801 + L1PB3 LINE L1 2753 3893 -2261 2265 102 7 0 chr9 37395826 37396121 -80466506 + AluSg SINE Alu 1 297 -13 10933 180 17 17 chr9 37396121 37398374 -80464253 + L1PB3 LINE L1 3893 6148 -6 1553 129 33 60 chr9 37398383 37398716 -80463911 - L1MA8 LINE L1 -3 6288 5965 879 101 14 14 chr9 37398718 37398866 -80463761 + L1MA8 LINE L1 5807 5954 -346 825 151 8 0 chr9 37399103 37399229 -80463398 - FLAM_C SINE Alu -6 127 1 1945 118 64 22 chr9 37399465 37399822 -80462805 - THE1C LTR MaLR 0 375 4 1669 162 20 26 chr9 37400700 37401002 -80461625 - AluJo SINE Alu -12 300 1 514 266 56 0 chr9 37401098 37401241 -80461386 - MIR SINE MIR -49 213 63 549 273 42 6 chr9 37401249 37401414 -80461213 - MIR SINE MIR -3 259 89 345 215 15 0 chr9 37401588 37401653 -80460974 - MIR SINE MIR -187 75 10 24 67 0 0 chr9 37402708 37402753 -80459874 + AT_rich Low_complexity Low_complexity 1 45 0 4905 186 90 85 chr9 37403568 37405104 -80457523 + L1MB7 LINE L1 2184 3752 -2630 2075 118 24 0 chr9 37405104 37405400 -80457227 + AluSx SINE Alu 1 303 -9 4905 186 90 85 chr9 37405400 37405813 -80456814 + L1MB7 LINE L1 3752 4161 -2221 1866 171 33 37 chr9 37405808 37406007 -80456620 + L1MB7 LINE L1 5078 5276 -1114 * 1768 159 33 13 chr9 37406007 37406309 -80456318 - AluJo SINE Alu -2 310 3 1866 171 33 37 chr9 37406309 37406614 -80456013 + L1MB7 LINE L1 5276 5575 -815 255 140 0 0 chr9 37406603 37406653 -80455974 + L1PA16 LINE L1 5954 6003 -163 * 274 167 17 0 chr9 37406661 37406721 -80455906 + L1PA16 LINE L1 6097 6157 -9 3980 192 26 7 chr9 37406728 37407562 -80455065 + L1MB7 LINE L1 5555 6404 -16 437 318 63 42 chr9 37407988 37408227 -80454400 + L2 LINE L2 3028 3271 -1 252 348 70 35 chr9 37408396 37408511 -80454116 + L2 LINE L2 3144 3262 -10 21 0 0 0 chr9 37408754 37408775 -80453852 + AT_rich Low_complexity Low_complexity 1 21 0 710 275 62 27 chr9 37409268 37409686 -80452941 - L1MC4a LINE L1 -304 5817 5439 277 294 10 0 chr9 37409688 37409790 -80452837 - L1P LINE L1 -784 5382 5280 438 214 171 60 chr9 37409911 37410163 -80452464 - L1MC4a LINE L1 -1823 5985 5706 21 0 0 0 chr9 37410244 37410265 -80452362 + AT_rich Low_complexity Low_complexity 1 21 0 1634 160 173 14 chr9 37410314 37410683 -80451944 - MSTA LTR MaLR 0 428 1 502 285 33 7 chr9 37410794 37410945 -80451682 + MIR SINE MIR 35 189 -73 237 359 7 69 chr9 37410965 37411110 -80451517 + L2 LINE L2 3137 3272 0 208 331 38 60 chr9 37411716 37411849 -80450778 - L3 LINE CR1 -2 1575 1446 1023 52 7 0 chr9 37412048 37412183 -80450444 - L1PA12 LINE L1 -7 6161 6026 658 181 113 0 chr9 37412636 37412769 -80449858 + MIR SINE MIR 115 262 0 282 309 7 43 chr9 37464340 37464517 -80398110 + CT-rich Low_complexity Low_complexity 6 293 0 237 286 38 19 chr9 37465824 37465929 -80396698 + MIR SINE MIR 107 213 -49 204 369 65 36 chr9 37466248 37466416 -80396211 - L2 LINE L2 -202 3070 2898 377 270 9 0 chr9 37466463 37466574 -80396053 - L1MEd LINE L1 -5301 818 707 2783 26 0 0 chr9 37466638 37466949 -80395678 + AluYa5 SINE Alu 1 311 0 352 301 49 0 chr9 37467309 37467432 -80395195 - L1MEd LINE L1 -5413 706 578 756 266 89 59 chr9 37467454 37467792 -80394835 - L1MEd LINE L1 -5599 520 173 2318 102 0 0 chr9 37468589 37468882 -80393745 + AluSg SINE Alu 1 293 -17 406 198 104 28 chr9 37468927 37469033 -80393594 + L1MC4a LINE L1 5806 5919 -1889 806 157 8 30 chr9 37469213 37469347 -80393280 - FLAM_C SINE Alu -1 132 2 234 0 0 0 chr9 37469349 37469375 -80393252 + (A)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chr9 37470813 37470846 -80391781 + AT_rich Low_complexity Low_complexity 1 33 0 861 144 0 0 chr9 37470846 37470964 -80391663 - FLAM_C SINE Alu -15 118 1 2490 61 0 0 chr9 37470977 37471270 -80391357 - AluY SINE Alu 0 311 19 468 282 87 25 chr9 37471735 37472093 -80390534 + L1ME4a LINE L1 5739 6118 -3 198 0 0 0 chr9 37472750 37472772 -80389855 + (TGGA)n Simple_repeat Simple_repeat 2 23 0 745 176 17 0 chr9 37477417 37477536 -80385091 + FLAM_C SINE Alu 5 125 -18 17490 136 31 20 chr9 37477558 37480019 -80382608 + L1 LINE L1 18 2513 -5052 2488 84 0 0 chr9 37480019 37480327 -80382300 + AluY SINE Alu 1 308 -3 17490 136 31 20 chr9 37480327 37480640 -80381987 + L1 LINE L1 2513 2821 -4744 1675 157 187 49 chr9 37480653 37481124 -80381503 - LTR10A LTR ERV1 -61 548 13 12008 111 29 71 chr9 37481134 37484147 -80378480 - Harlequin LTR ERV1 -2 6647 2066 2665 46 0 0 chr9 37484147 37484454 -80378173 - AluY SINE Alu -4 307 1 12008 111 29 71 chr9 37484454 37485763 -80376864 - Harlequin LTR ERV1 -4583 2066 704 488 178 19 6 chr9 37485766 37485923 -80376704 + CT-rich Low_complexity Low_complexity 2 160 0 996 204 79 138 chr9 37486213 37486835 -80375792 - Harlequin LTR ERV1 -6064 585 1 1785 177 207 36 chr9 37486844 37487312 -80375315 - LTR10A LTR ERV1 -61 548 1 1344 136 18 5 chr9 37487312 37487532 -80375095 + L1 LINE L1 2818 3040 -4525 1243 87 0 0 chr9 37487548 37487720 -80374907 - L1M1 LINE L1 -865 5440 5269 902 168 6 6 chr9 37487716 37487883 -80374744 + L1M1 LINE L1 6516 6682 -883 * 816 180 14 0 chr9 37488280 37488419 -80374208 + FAM SINE Alu 28 168 -17 258 246 77 93 chr9 37488456 37488704 -80373923 + HAL1 LINE L1 941 1184 -1323 564 251 30 25 chr9 37488753 37488952 -80373675 + HAL1 LINE L1 1428 1627 -880 587 273 257 6 chr9 37488955 37489270 -80373357 + L2 LINE L2 2919 3312 -1 216 220 20 0 chr9 37489351 37489401 -80373226 + L2 LINE L2 3222 3272 0 567 239 87 48 chr9 37490620 37490909 -80371718 + L1MC5 LINE L1 7629 7928 -33 2402 187 36 49 chr9 37491166 37491730 -80370897 + L1ME1 LINE L1 5526 6257 -77 180 111 0 0 chr9 37491730 37491757 -80370870 + (TG)n Simple_repeat Simple_repeat 2 28 0 2402 187 36 49 chr9 37491757 37491795 -80370832 + L1ME1 LINE L1 6257 6294 -40 486 258 28 28 chr9 37491798 37491976 -80370651 + L1ME3A LINE L1 5993 6170 0 1354 245 35 43 chr9 37492064 37492252 -80370375 - MLT1J2 LTR MaLR -78 372 187 2323 92 0 19 chr9 37492252 37492566 -80370061 - AluSc SINE Alu -1 308 1 1354 245 35 43 chr9 37492566 37492752 -80369875 - MLT1J2 LTR MaLR -263 187 1 712 214 0 8 chr9 37493567 37493693 -80368934 - FLAM_C SINE Alu -17 126 2 372 297 230 0 chr9 37493931 37494140 -80368487 + MIR SINE MIR 6 262 0 192 253 77 66 chr9 37494719 37494810 -80367817 - L2 LINE L2 -25 3247 3156 180 225 25 0 chr9 37495298 37495338 -80367289 - L2 LINE L2 -6 3307 3267 320 346 39 0 chr9 37496623 37496727 -80365900 - L2 LINE L2 -11 3261 3154 1904 98 29 0 chr9 37496765 37497040 -80365587 + L1MA7 LINE L1 6009 6291 0 678 157 22 30 chr9 37497316 37497450 -80365177 + L1MB5 LINE L1 6034 6166 -8 2155 119 0 10 chr9 37497483 37497786 -80364841 + AluSq SINE Alu 1 300 -13 2942 150 50 29 chr9 37498331 37498885 -80363742 + L1MB4 LINE L1 5609 6174 -6 1379 253 73 62 chr9 37499207 37500023 -80362604 - L1ME4a LINE L1 -3 6118 5294 407 316 106 5 chr9 37500043 37500261 -80362366 - L1ME4a LINE L1 -893 5253 5014 867 178 6 0 chr9 37501918 37502075 -80360552 - AluSg/x SINE Alu -17 293 136 2285 116 0 0 chr9 37502807 37503109 -80359518 + AluSx SINE Alu 1 302 -10 223 253 32 11 chr9 37503836 37503931 -80358696 + A-rich Low_complexity Low_complexity 5 101 0 2165 127 0 0 chr9 37504602 37504886 -80357741 + AluSx SINE Alu 1 284 -28 272 294 193 0 chr9 37505864 37505973 -80356654 - L2 LINE L2 -4 3268 3139 1743 150 0 26 chr9 37506261 37506574 -80356053 - AluSx SINE Alu -7 305 1 288 148 0 0 chr9 37506622 37506683 -80355944 + (T)n Simple_repeat Simple_repeat 1 61 0 218 135 54 0 chr9 37506751 37506788 -80355839 + (CCCTG)n Simple_repeat Simple_repeat 2 40 0 228 196 0 0 chr9 37507878 37507929 -80354698 - L1MB5 LINE L1 -21 6153 6103 600 202 17 17 chr9 37508106 37508249 -80354378 + L1ME2 LINE L1 6030 6181 -3 2295 104 10 0 chr9 37508419 37508718 -80353909 - AluSx SINE Alu -5 307 6 4295 109 43 0 chr9 37509049 37509680 -80352947 - Tigger1 DNA MER2_type -1514 904 247 310 322 81 56 chr9 37509797 37510120 -80352507 + L2 LINE L2 2450 2780 -534 1566 120 132 8 chr9 37510123 37510389 -80352238 + AluSg SINE Alu 1 299 -11 248 160 20 0 chr9 37510389 37510439 -80352188 + LTR37A LTR ERV1 376 426 0 2337 77 21 0 chr9 37511293 37511580 -80351047 - AluSx SINE Alu -19 293 1 1175 175 86 77 chr9 37511610 37511948 -80350679 - MER50 LTR ERV1 0 734 394 3475 133 82 38 chr9 37512160 37512767 -80349860 - MER51A LTR ERV1 0 634 1 284 182 61 30 chr9 37512773 37512839 -80349788 - MER50 LTR ERV1 -657 77 10 1674 147 84 23 chr9 37512845 37513192 -80349435 + THE1C LTR MaLR 8 375 0 237 65 0 0 chr9 37513369 37513400 -80349227 + (CACCC)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr9 37513597 37513622 -80349005 + GC_rich Low_complexity Low_complexity 1 25 0 210 37 0 0 chr9 37513893 37513920 -80348707 + (CCG)n Simple_repeat Simple_repeat 3 29 0 258 298 48 12 chr9 37514637 37514721 -80347906 + L2 LINE L2 3154 3240 -32 299 161 259 0 chr9 37514731 37514812 -80347815 - MER51C LTR ERV1 -11 629 528 1899 106 6 77 chr9 37515445 37515757 -80346870 + AluSx SINE Alu 1 290 -22 401 115 0 26 chr9 37515944 37516034 -80346593 - MER53 DNA DNA -2 187 4 1713 152 55 7 chr9 37516458 37516748 -80345879 - L1MB3 LINE L1 -19 6164 5861 3456 89 20 0 chr9 37516763 37517213 -80345414 - L1PA14 LINE L1 0 6161 5703 2982 154 54 65 chr9 37517218 37517273 -80345354 - L1MB3 LINE L1 -308 5875 5821 2183 128 3 0 chr9 37517273 37517579 -80345048 - AluSx SINE Alu -5 307 1 2982 154 54 65 chr9 37517579 37517807 -80344820 - L1MB3 LINE L1 -362 5821 5592 207 0 0 0 chr9 37517807 37517830 -80344797 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2982 154 54 65 chr9 37517830 37517960 -80344667 - L1MB3 LINE L1 -591 5592 5462 2096 113 7 0 chr9 37517960 37518244 -80344383 + AluSx SINE Alu 1 286 -26 2982 154 54 65 chr9 37518244 37518669 -80343958 - L1MB3 LINE L1 -721 5462 5042 34 24 0 0 chr9 37518670 37518711 -80343916 + AT_rich Low_complexity Low_complexity 1 41 0 471 35 69 52 chr9 37518711 37518885 -80343742 + (TA)n Simple_repeat Simple_repeat 1 177 0 250 198 62 0 chr9 37518887 37518983 -80343644 + (CTATA)n Simple_repeat Simple_repeat 2 103 0 470 11 65 69 chr9 37519102 37519383 -80343244 + (TA)n Simple_repeat Simple_repeat 1 279 0 353 47 128 0 chr9 37519400 37519548 -80343079 + (TA)n Simple_repeat Simple_repeat 2 168 0 * 471 153 23 17 chr9 37519531 37519707 -80342920 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 537 119 36 28 chr9 37519734 37520269 -80342358 + (TTATA)n Simple_repeat Simple_repeat 1 539 0 3519 188 14 4 chr9 37520271 37520977 -80341650 - L1MB3 LINE L1 -1115 5031 4319 824 163 33 141 chr9 37522965 37523235 -80339392 - L1MB3 LINE L1 -1810 4336 4096 2018 120 0 60 chr9 37523238 37523555 -80339072 + AluSx SINE Alu 2 299 -13 2115 88 54 14 chr9 37523557 37523852 -80338775 + AluSc SINE Alu 1 307 -2 2054 143 13 0 chr9 37523985 37524286 -80338341 + AluSx SINE Alu 1 305 -7 1933 104 184 32 chr9 37525128 37525444 -80337183 - THE1B LTR MaLR 0 364 1 488 165 35 0 chr9 37525449 37525534 -80337093 - MLT1H LTR MaLR -8 541 454 248 306 69 0 chr9 37525555 37525627 -80337000 - MARNA DNA Mariner -417 169 93 1833 166 0 0 chr9 37526275 37526565 -80336062 + AluSx SINE Alu 1 290 -22 227 280 61 38 chr9 37527052 37527184 -80335443 + MER5A DNA MER1_type 53 187 -2 * 513 214 7 14 chr9 37527081 37527197 -80335430 - MER5A DNA MER1_type -71 118 4 730 276 103 15 chr9 37527579 37527775 -80334852 - L1ME4a LINE L1 0 6121 5944 4810 78 12 35 chr9 37527775 37527828 -80334799 - L1PB2 LINE L1 -8 6143 6090 2201 127 0 3 chr9 37527828 37528142 -80334485 - AluSq SINE Alu 0 313 1 4810 78 12 35 chr9 37528142 37528756 -80333871 - L1PB2 LINE L1 -61 6090 5490 2151 134 0 0 chr9 37528756 37529055 -80333572 - AluSx SINE Alu -13 299 1 4810 78 12 35 chr9 37529055 37529076 -80333551 - L1PB2 LINE L1 -661 5490 5470 730 276 103 15 chr9 37529076 37529334 -80333293 - L1ME4a LINE L1 -177 5944 5430 2272 118 3 10 chr9 37529432 37529745 -80332882 - AluSq SINE Alu -2 311 1 1537 132 34 48 chr9 37529758 37530053 -80332574 + L1MB1 LINE L1 5873 6163 -5 281 350 101 46 chr9 37530317 37530554 -80332073 + L2 LINE L2 2937 3186 -86 26 30 0 0 chr9 37530653 37530686 -80331941 + AT_rich Low_complexity Low_complexity 1 33 0 1947 201 59 0 chr9 37530726 37531133 -80331494 + L1M4 LINE L1 3878 4308 -1838 938 164 12 0 chr9 37531133 37531298 -80331329 + L1MB7 LINE L1 6018 6184 0 341 286 0 24 chr9 37531408 37531492 -80331135 + L2 LINE L2 3187 3268 -4 25 31 0 0 chr9 37531777 37531809 -80330818 + AT_rich Low_complexity Low_complexity 1 32 0 1893 162 3 19 chr9 37531810 37532119 -80330508 + AluJb SINE Alu 1 304 -8 417 331 7 15 chr9 37532385 37532521 -80330106 + L2 LINE L2 1097 1231 -2083 407 291 102 64 chr9 37532947 37533308 -80329319 + L2 LINE L2 1249 1623 -1691 455 182 5 44 chr9 37533435 37533548 -80329079 + MLT1L LTR MaLR 390 434 -33 651 254 44 19 chr9 37533835 37534040 -80328587 + HAL1 LINE L1 1285 1494 -1013 1038 163 132 11 chr9 37534048 37534238 -80328389 + AluJb SINE Alu 1 213 -99 477 263 86 23 chr9 37534750 37534925 -80327702 - MIR SINE MIR -12 250 65 21 36 0 0 chr9 37535068 37535096 -80327531 + AT_rich Low_complexity Low_complexity 1 28 0 886 118 0 16 chr9 37535208 37535335 -80327292 + FLAM_C SINE Alu 1 125 -18 342 297 148 0 chr9 37535505 37535633 -80326994 + L2 LINE L2 3161 3307 -6 214 391 128 8 chr9 37536608 37536741 -80325886 - L2 LINE L2 -8 3264 3116 2485 62 0 7 chr9 37536879 37537188 -80325439 + AluY SINE Alu 1 307 -4 266 324 0 29 chr9 37537745 37537850 -80324777 + MIR SINE MIR 20 121 -141 288 213 67 0 chr9 37537865 37537940 -80324687 - MER116 DNA Mariner 0 80 1 187 274 131 12 chr9 37537941 37538025 -80324602 + MIR SINE MIR 154 247 -15 383 0 21 0 chr9 37538166 37538213 -80324414 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1963 124 0 0 chr9 37538264 37538523 -80324104 - AluSx SINE Alu -53 259 1 280 263 68 17 chr9 37538768 37538886 -80323741 - L1ME LINE L1 -248 5873 5750 24 0 0 0 chr9 37538891 37538915 -80323712 + AT_rich Low_complexity Low_complexity 1 24 0 968 119 0 0 chr9 37538915 37539041 -80323586 + FLAM_C SINE Alu 1 126 -17 248 148 56 0 chr9 37539057 37539089 -80323538 - L1P3 LINE L1 -444 5728 5690 324 0 0 0 chr9 37539089 37539125 -80323502 + (TA)n Simple_repeat Simple_repeat 2 37 0 248 148 56 0 chr9 37539125 37539146 -80323481 - L1P3 LINE L1 -482 5690 5672 417 343 150 11 chr9 37539243 37539523 -80323104 - L2 LINE L2 0 3272 2954 1477 246 78 27 chr9 37539823 37540274 -80322353 - MLT1J LTR MaLR -29 482 9 526 286 53 72 chr9 37540709 37540902 -80321725 + MIR SINE MIR 4 192 -70 2076 153 0 3 chr9 37540902 37541215 -80321412 + AluSx SINE Alu 1 312 0 526 286 53 72 chr9 37541215 37541283 -80321344 + MIR SINE MIR 192 260 -2 341 238 149 42 chr9 37541979 37542070 -80320557 + MER58C DNA MER1_type 30 110 -2310 809 193 18 0 chr9 37542070 37542241 -80320386 + L1MA7 LINE L1 6118 6291 0 341 238 149 42 chr9 37542241 37542317 -80320310 + MER58C DNA MER1_type 110 215 0 205 325 95 12 chr9 37543068 37543237 -80319390 - MIR SINE MIR -73 189 7 471 325 108 17 chr9 37544925 37545156 -80317471 - MIR SINE MIR 0 262 11 219 297 20 69 chr9 37546378 37546479 -80316148 - MIR3 SINE MIR -21 187 92 22 35 0 0 chr9 37548409 37548438 -80314189 + AT_rich Low_complexity Low_complexity 1 29 0 946 179 22 18 chr9 37548445 37548669 -80313958 + L1MD3 LINE L1 7771 7995 0 2001 137 3 0 chr9 37548719 37549026 -80313601 + AluJb SINE Alu 1 308 -4 1759 175 52 48 chr9 37549041 37549227 -80313400 + L1MC4 LINE L1 6973 7157 -885 1661 129 86 4 chr9 37549227 37549507 -80313120 + AluSx SINE Alu 1 303 -9 1759 175 52 48 chr9 37549507 37549759 -80312868 + L1MC4 LINE L1 7157 7413 -629 863 253 94 81 chr9 37549768 37549876 -80312751 - HAL1 LINE L1 -1553 954 849 2481 44 0 0 chr9 37549876 37550171 -80312456 + AluY SINE Alu 2 296 -15 863 253 94 81 chr9 37550171 37550679 -80311948 - HAL1 LINE L1 -1658 849 330 1821 98 4 0 chr9 37550703 37550957 -80311670 + AluSx SINE Alu 1 255 -57 970 151 16 54 chr9 37550988 37551173 -80311454 + AluJo SINE Alu 1 178 -134 479 266 188 0 chr9 37551600 37551754 -80310873 - MIR SINE MIR 0 262 80 815 212 30 0 chr9 37551821 37551986 -80310641 + FRAM SINE Alu 4 173 -3 1130 280 72 40 chr9 37552042 37552321 -80310306 - L1MEd LINE L1 -4880 1239 970 1440 192 10 26 chr9 37552321 37552484 -80310143 - AluJo SINE Alu -10 302 145 207 0 0 0 chr9 37552484 37552507 -80310120 + (CTTG)n Simple_repeat Simple_repeat 4 26 0 1440 192 10 26 chr9 37552507 37552650 -80309977 - AluJo SINE Alu -167 145 1 1130 280 72 40 chr9 37552650 37553053 -80309574 - L1MEd LINE L1 -5149 970 535 1724 160 10 10 chr9 37553291 37553584 -80309043 + AluJo SINE Alu 3 295 -17 1453 197 4 0 chr9 37553696 37553965 -80308662 - AluJo SINE Alu -16 296 27 689 180 0 43 chr9 37553989 37554128 -80308499 + FLAM_C SINE Alu 1 133 0 355 325 71 0 chr9 37554166 37554335 -80308292 - L1ME4a LINE L1 -251 5870 5690 850 249 63 89 chr9 37554400 37554750 -80307877 - MER102b DNA MER1_type 0 341 1 1705 173 3 0 chr9 37555136 37555436 -80307191 - AluJb SINE Alu -11 301 1 2118 112 3 6 chr9 37555811 37556124 -80306503 - AluSx SINE Alu 0 312 1 964 117 7 0 chr9 37556292 37556437 -80306190 + AluSp/q SINE Alu 165 310 -3 1336 248 33 0 chr9 37556448 37556751 -80305876 + L2 LINE L2 2432 2744 -570 241 263 160 13 chr9 37556786 37556897 -80305730 - L1M4 LINE L1 -1947 5618 5476 1601 170 3 31 chr9 37556897 37557191 -80305436 - AluJb SINE Alu -26 286 1 241 263 160 13 chr9 37557191 37557235 -80305392 - L1M4 LINE L1 -2089 5476 5440 288 247 67 95 chr9 37557277 37557309 -80305318 - MLT1H LTR MaLR -16 574 543 1737 136 0 88 chr9 37557309 37557639 -80304988 + AluSx SINE Alu 1 301 -11 288 247 67 95 chr9 37557639 37557911 -80304716 - MLT1H LTR MaLR -47 543 126 1444 195 54 86 chr9 37558032 37558172 -80304455 - L1M2c LINE L1 -4340 3225 3082 2166 102 3 0 chr9 37558172 37558467 -80304160 - AluSx SINE Alu -16 296 1 1444 195 54 86 chr9 37558467 37558768 -80303859 - L1M2c LINE L1 -4483 3082 2798 1297 226 17 13 chr9 37558769 37559094 -80303533 - L1M2c LINE L1 -4610 2956 2634 2012 127 7 0 chr9 37559094 37559386 -80303241 - AluSq SINE Alu -19 294 1 1297 226 17 13 chr9 37559386 37559435 -80303192 - L1M2c LINE L1 -4932 2634 2282 4999 193 39 12 chr9 37559721 37560719 -80301908 - L1M2c LINE L1 -4290 2275 1251 22 35 0 0 chr9 37560776 37560805 -80301822 + AT_rich Low_complexity Low_complexity 1 29 0 1570 195 0 10 chr9 37560844 37561157 -80301470 + AluJo SINE Alu 3 312 0 839 173 0 0 chr9 37561193 37561350 -80301277 - FLAM_C SINE Alu 0 157 1 307 211 11 33 chr9 37561350 37561440 -80301187 + L1MEc LINE L1 1441 1528 -4868 2513 107 3 16 chr9 37561523 37561898 -80300729 - L1PB1 LINE L1 0 6151 5782 282 229 0 0 chr9 37561898 37561968 -80300659 + (TA)n Simple_repeat Simple_repeat 1 70 0 300 256 0 0 chr9 37561969 37562059 -80300568 - L1MC4 LINE L1 -1339 6703 6614 * 6230 163 16 56 chr9 37562043 37562059 -80300568 - L1P5 LINE L1 -359 6508 6493 189 0 0 0 chr9 37562059 37562080 -80300547 + (CA)n Simple_repeat Simple_repeat 2 22 0 6230 163 16 56 chr9 37562080 37562370 -80300257 - L1P5 LINE L1 -374 6493 6193 2096 105 0 3 chr9 37562370 37562698 -80299929 - AluSq SINE Alu 0 327 1 6230 163 16 56 chr9 37562698 37562900 -80299727 - L1P5 LINE L1 -674 6193 5985 2106 107 10 7 chr9 37562900 37563209 -80299418 - AluSg SINE Alu 0 310 1 6230 163 16 56 chr9 37563209 37563754 -80298873 - L1P5 LINE L1 -882 5985 5420 2066 109 0 7 chr9 37563754 37564048 -80298579 - AluSq SINE Alu -21 292 1 6230 163 16 56 chr9 37564048 37564954 -80297673 - L1P5 LINE L1 -1447 5420 4600 5029 119 92 7 chr9 37564948 37565893 -80296734 - L1P5 LINE L1 -3657 3205 2181 * 2130 117 3 0 chr9 37565893 37566202 -80296425 - AluSq SINE Alu -3 310 1 1135 135 78 26 chr9 37566202 37566395 -80296232 + MER51A LTR ERV1 432 634 0 4637 114 6 41 chr9 37566395 37567097 -80295530 - MER66B-int LTR ERV1 -741 5935 5259 14915 85 9 7 chr9 37567124 37569063 -80293564 - HERVK9 LTR ERVK -2626 3290 1347 4134 87 15 46 chr9 37569063 37569203 -80293424 - HERVK9 LTR ERVK -5305 611 468 2233 82 3 7 chr9 37569203 37569509 -80293118 - AluY SINE Alu -6 305 1 4134 87 15 46 chr9 37569509 37569981 -80292646 - HERVK9 LTR ERVK -5448 468 18 3385 125 8 8 chr9 37569984 37570495 -80292132 - MER9 LTR ERVK 0 511 1 808 150 8 0 chr9 37570500 37570620 -80292007 + AluSg/x SINE Alu 156 276 -34 216 0 0 0 chr9 37570621 37570645 -80291982 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1352 154 125 45 chr9 37570648 37570960 -80291667 - THE1C LTR MaLR -35 340 4 9450 121 21 60 chr9 37570963 37571216 -80291411 - THE1C-int LTR MaLR 0 1580 1319 1769 172 3 0 chr9 37571216 37571513 -80291114 + AluSx SINE Alu 1 298 -14 9450 121 21 60 chr9 37571513 37572901 -80289726 - THE1C-int LTR MaLR -261 1319 3 1828 139 57 46 chr9 37572905 37573271 -80289356 - THE1C LTR MaLR -5 370 1 2003 69 69 7 chr9 37573271 37573559 -80289068 + L1MA1 LINE L1 5997 6302 0 9038 220 98 90 chr9 37573559 37577179 -80285448 - MER66B-int LTR ERV1 -3029 3647 1 2584 141 2 126 chr9 37577179 37577734 -80284893 - MER66B LTR ERV1 0 486 1 259 340 14 75 chr9 37577753 37577933 -80284694 - L1MEd LINE L1 -5587 532 374 1995 121 3 10 chr9 37577933 37578231 -80284396 + AluSx SINE Alu 5 300 -12 259 340 14 75 chr9 37578231 37578332 -80284295 - L1MEd LINE L1 -5745 374 268 295 197 61 0 chr9 37578482 37578548 -80284079 + MER6 DNA MER2_type -2 67 -77 914 145 21 48 chr9 37578549 37578735 -80283892 - FRAM SINE Alu 0 176 1 23 0 0 0 chr9 37578742 37578765 -80283862 + AT_rich Low_complexity Low_complexity 1 23 0 758 172 0 28 chr9 37578765 37578910 -80283717 - FLAM_C SINE Alu -1 142 2 377 180 16 0 chr9 37578917 37578978 -80283649 + MER6 DNA MER2_type 60 121 -744 331 197 61 0 chr9 37578998 37579064 -80283563 + MER6 DNA MER2_type 794 863 -2 689 210 45 13 chr9 37579067 37579224 -80283403 - L1MA10 LINE L1 -48 6286 6125 790 193 33 39 chr9 37579317 37579498 -80283129 - L1MA7 LINE L1 -170 6121 5942 2056 132 0 0 chr9 37579499 37579802 -80282825 - AluSx SINE Alu -9 303 1 389 304 119 9 chr9 37580000 37580237 -80282390 - L1 LINE L1 -1811 4335 4068 237 357 26 26 chr9 37580277 37580431 -80282196 - MER117 DNA MER1_type -42 155 2 265 294 91 52 chr9 37580455 37580686 -80281941 - L1 LINE L1 -2109 4037 3798 1903 149 17 0 chr9 37580692 37580988 -80281639 - AluJb SINE Alu -11 301 1 451 229 0 55 chr9 37581044 37581153 -80281474 - L2 LINE L2 -33 3239 3137 1589 167 43 17 chr9 37581483 37581783 -80280844 - AluJo SINE Alu -4 308 1 607 298 126 59 chr9 37581784 37581938 -80280689 - L1 LINE L1 -2663 3483 3341 2394 79 0 0 chr9 37581938 37582241 -80280386 + AluSc SINE Alu 1 303 -6 607 298 126 59 chr9 37582241 37582492 -80280135 - L1 LINE L1 -2805 3341 3051 507 269 19 58 chr9 37583340 37583462 -80279165 - MIR SINE MIR -106 156 40 2309 85 10 0 chr9 37583462 37583767 -80278860 - AluY SINE Alu -2 309 2 507 269 19 58 chr9 37583767 37583800 -80278827 - MIR SINE MIR -222 40 7 300 213 88 150 chr9 37583847 37583937 -80278690 - L1 LINE L1 -3200 2946 2852 1103 160 0 17 chr9 37583937 37584112 -80278515 - FAM SINE Alu -3 172 1 300 213 88 150 chr9 37584112 37584261 -80278366 - L1 LINE L1 -3294 2852 2722 801 161 17 52 chr9 37584476 37584650 -80277977 + AluJb SINE Alu 1 168 -144 2069 122 3 0 chr9 37585483 37585777 -80276850 - AluSx SINE Alu -17 295 1 457 317 71 6 chr9 37586786 37586969 -80275658 - MIR SINE MIR -14 248 54 2109 113 3 0 chr9 37586979 37587281 -80275346 - AluSg SINE Alu -7 303 1 474 235 148 96 chr9 37587295 37587755 -80274872 - MLT1L LTR MaLR -6 609 126 499 224 56 8 chr9 37588185 37588310 -80274317 - FLAM_A SINE Alu -2 131 1 28 0 0 0 chr9 37588392 37588420 -80274207 + AT_rich Low_complexity Low_complexity 1 28 0 201 39 0 0 chr9 37591103 37591129 -80271498 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 221 268 0 0 chr9 37592563 37592619 -80270008 + CT-rich Low_complexity Low_complexity 3 58 0 209 333 167 0 chr9 37593014 37593134 -80269493 - MER91C DNA MER1_type 0 140 1 2208 103 0 0 chr9 37593211 37593511 -80269116 - AluSx SINE Alu -12 300 1 220 267 120 27 chr9 37595719 37595869 -80266758 + L2 LINE L2 1806 1969 -1345 2219 105 7 16 chr9 37596115 37596421 -80266206 - AluSq SINE Alu -10 303 1 184 321 310 8 chr9 37598056 37598420 -80264207 + L2 LINE L2 1987 2460 -854 307 194 69 14 chr9 37598680 37598752 -80263875 - L3 LINE CR1 -437 1140 1065 517 277 28 51 chr9 37598883 37599060 -80263567 - MIR SINE MIR -85 177 5 798 274 177 30 chr9 37599233 37599634 -80262993 + L2 LINE L2 2854 3313 0 494 330 233 4 chr9 37600105 37600566 -80262061 - L3 LINE CR1 -249 1328 709 2263 120 0 13 chr9 37600569 37600885 -80261742 - AluSx SINE Alu 0 312 1 1999 123 17 24 chr9 37600893 37601186 -80261441 - AluJo SINE Alu -21 291 1 2222 103 24 0 chr9 37601880 37602170 -80260457 - AluSx SINE Alu -15 297 1 2254 124 0 0 chr9 37602321 37602619 -80260008 - AluSx SINE Alu -13 299 2 2354 95 7 0 chr9 37602738 37603034 -80259593 - AluSq SINE Alu -15 298 1 326 374 69 29 chr9 37603223 37603573 -80259054 + L2 LINE L2 2892 3255 -17 442 48 0 0 chr9 37603608 37603670 -80258957 + AluY SINE Alu 239 300 -11 203 296 197 30 chr9 37603708 37603911 -80258716 + L2 LINE L2 2301 2537 -777 2076 134 3 13 chr9 37603911 37604216 -80258411 - AluSx SINE Alu -10 302 1 2403 161 12 34 chr9 37608090 37608358 -80254269 + L1MB8 LINE L1 5040 5312 -866 2280 121 0 0 chr9 37608358 37608656 -80253971 + AluSc SINE Alu 1 298 -11 2403 161 12 34 chr9 37608656 37609185 -80253442 + L1MB8 LINE L1 5312 5965 -213 1244 83 0 0 chr9 37609195 37609340 -80253287 + AluSq/x SINE Alu 1 145 -168 234 288 62 0 chr9 37609355 37609501 -80253126 + L1ME4a LINE L1 5939 6093 -28 2099 136 14 0 chr9 37609526 37609820 -80252807 - AluJb SINE Alu -14 298 1 971 195 25 69 chr9 37610340 37610698 -80251929 - L1M LINE L1 -833 5313 4990 67 42 0 0 chr9 37610983 37611078 -80251549 + AT_rich Low_complexity Low_complexity 1 95 0 294 339 73 0 chr9 37611078 37611202 -80251425 - MIR3 SINE MIR -66 142 10 2301 94 0 3 chr9 37611225 37611511 -80251116 + AluSc SINE Alu 7 291 -18 327 270 184 16 chr9 37611923 37612108 -80250519 - MIR SINE MIR 0 262 47 1872 138 11 14 chr9 37612576 37612859 -80249768 - AluJo SINE Alu -13 299 18 258 229 0 0 chr9 37613343 37613413 -80249214 + (TATG)n Simple_repeat Simple_repeat 4 73 0 186 43 0 0 chr9 37614352 37614375 -80248252 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 2316 96 20 3 chr9 37616130 37616433 -80246194 - AluSq SINE Alu -5 308 1 2517 65 0 13 chr9 37617124 37617434 -80245193 + AluY SINE Alu 1 306 -5 2271 112 0 0 chr9 37617548 37617843 -80244784 + AluSq SINE Alu 1 295 -18 924 148 21 151 chr9 37617851 37618181 -80244446 + L1M4 LINE L1 5047 5334 -812 2179 104 0 13 chr9 37618181 37618479 -80244148 + AluY SINE Alu 1 294 -17 291 344 80 24 chr9 37618485 37618697 -80243930 - L2 LINE L2 -541 2773 2550 771 286 22 4 chr9 37618702 37618933 -80243694 + MIR SINE MIR 2 236 -26 2419 86 0 3 chr9 37618949 37619250 -80243377 + AluY SINE Alu 1 300 -11 1978 134 10 23 chr9 37619668 37619967 -80242660 + AluSx SINE Alu 1 295 -17 2445 89 0 3 chr9 37620169 37620472 -80242155 + AluSx SINE Alu 1 302 -10 4410 157 27 11 chr9 37620658 37621498 -80241129 - L1MB8 LINE L1 -1 6177 5324 2224 112 20 3 chr9 37621498 37621801 -80240826 + AluSq SINE Alu 1 308 -5 186 43 0 0 chr9 37623556 37623579 -80239048 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 258 229 0 0 chr9 37624518 37624588 -80238039 + (CATA)n Simple_repeat Simple_repeat 4 73 0 1872 138 11 14 chr9 37625072 37625355 -80237272 + AluJo SINE Alu 18 299 -13 327 270 184 16 chr9 37625823 37626008 -80236619 + MIR SINE MIR 47 262 0 2301 94 0 3 chr9 37626420 37626706 -80235921 - AluSc SINE Alu -18 291 7 294 339 73 0 chr9 37626729 37626853 -80235774 + MIR3 SINE MIR 10 142 -66 67 42 0 0 chr9 37626853 37626948 -80235679 + AT_rich Low_complexity Low_complexity 1 95 0 971 195 25 69 chr9 37627233 37627591 -80235036 + L1M4 LINE L1 4990 5330 -833 2099 136 14 0 chr9 37628111 37628405 -80234222 + AluJb SINE Alu 1 298 -14 887 211 16 16 chr9 37628589 37628774 -80233853 + AluJb SINE Alu 116 300 -12 1219 237 58 20 chr9 37628779 37628833 -80233794 - L2 LINE L2 -962 2352 2301 2162 131 0 16 chr9 37628833 37629147 -80233480 + AluSx SINE Alu 1 309 -3 1219 237 58 20 chr9 37629147 37629438 -80233189 - L2 LINE L2 -1013 2301 1994 1872 173 0 0 chr9 37629518 37629813 -80232814 - AluJb SINE Alu -13 299 5 2529 194 76 109 chr9 37629878 37630135 -80232492 + L1MC5 LINE L1 6669 6933 -1028 7711 170 18 105 chr9 37630135 37632057 -80230570 + MER52A LTR ERV1 1 1755 0 2529 194 76 109 chr9 37632057 37632082 -80230545 + L1MC5 LINE L1 6933 6957 -1004 2285 93 0 0 chr9 37632082 37632360 -80230267 + AluSx SINE Alu 3 280 -32 189 0 0 0 chr9 37632360 37632381 -80230246 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2019 135 24 7 chr9 37632386 37632682 -80229945 + AluJb SINE Alu 1 301 -11 2529 194 76 109 chr9 37632682 37632969 -80229658 + L1MC5 LINE L1 6960 7255 -706 763 171 0 0 chr9 37632969 37633098 -80229529 - FLAM_A SINE Alu -4 129 1 2529 194 76 109 chr9 37633098 37633126 -80229501 + L1MC5 LINE L1 7255 7282 -679 1241 156 19 5 chr9 37633126 37633338 -80229289 + MER20 DNA MER1_type 1 215 -4 2529 194 76 109 chr9 37633338 37633619 -80229008 + L1MC5 LINE L1 7282 7571 -390 1747 139 21 14 chr9 37633619 37633906 -80228721 + AluJb SINE Alu 1 289 -23 2529 194 76 109 chr9 37633906 37634260 -80228367 + L1MC5 LINE L1 7571 7870 -91 1552 101 14 10 chr9 37634442 37634651 -80227976 - AluSq SINE Alu -23 290 81 188 0 0 69 chr9 37636682 37636711 -80225916 + (CCCG)n Simple_repeat Simple_repeat 4 30 0 21 82 0 0 chr9 37636804 37636853 -80225774 + GC_rich Low_complexity Low_complexity 1 49 0 40 49 0 0 chr9 37637057 37637118 -80225509 + GC_rich Low_complexity Low_complexity 1 61 0 546 212 74 49 chr9 37637868 37638071 -80224556 + MER3 DNA MER1_type 1 208 -1 2454 78 0 0 chr9 37642354 37642649 -80219978 + AluY SINE Alu 1 295 -16 2242 122 0 0 chr9 37643687 37643982 -80218645 + AluSx SINE Alu 1 295 -17 443 268 9 0 chr9 37643994 37644106 -80218521 + MER117 DNA MER1_type 14 126 -71 202 218 0 55 chr9 37644811 37644866 -80217761 + CT-rich Low_complexity Low_complexity 3 54 0 2052 117 0 51 chr9 37645106 37645422 -80217205 + AluSx SINE Alu 2 301 -11 219 217 11 98 chr9 37645561 37645653 -80216974 + L2 LINE L2 3229 3312 -1 472 276 30 0 chr9 37645670 37645804 -80216823 - L2 LINE L2 -587 2727 2590 231 358 57 26 chr9 37646030 37646104 -80216523 - L2 LINE L2 -2178 1136 1066 830 115 0 23 chr9 37646104 37646234 -80216393 + FLAM_C SINE Alu 2 128 -5 231 358 57 26 chr9 37646234 37646388 -80216239 - L2 LINE L2 -2248 1066 901 1036 164 0 0 chr9 37649173 37649332 -80213295 + AluJb SINE Alu 141 299 -13 1593 93 0 14 chr9 37651659 37651873 -80210754 + AluSq SINE Alu 91 301 -12 2016 116 62 0 chr9 37651934 37652226 -80210401 + AluSx SINE Alu 1 310 -2 1959 194 36 58 chr9 37652893 37653397 -80209230 + MLT1D LTR MaLR 1 493 -12 185 162 385 3 chr9 37653434 37653535 -80209092 + MIR SINE MIR 37 166 -66 403 315 144 88 chr9 37653546 37653897 -80208730 + L3 LINE CR1 410 740 -837 2089 118 21 0 chr9 37653897 37654203 -80208424 + AluSg SINE Alu 1 312 0 1723 194 6 13 chr9 37654209 37654523 -80208104 + AluJo SINE Alu 1 312 0 403 315 144 88 chr9 37654523 37654642 -80207985 + L3 LINE CR1 744 915 -662 269 234 104 13 chr9 37654663 37654740 -80207887 - MIR3 SINE MIR -27 181 98 2271 90 10 0 chr9 37655019 37655307 -80207320 + AluSx SINE Alu 1 291 -21 2093 90 60 0 chr9 37655332 37655649 -80206978 + AluSg SINE Alu 1 333 0 25 0 0 0 chr9 37655649 37655674 -80206953 + AT_rich Low_complexity Low_complexity 1 25 0 15139 101 43 9 chr9 37656002 37658242 -80204385 + Tigger1 DNA MER2_type 1 2165 -253 2092 79 57 11 chr9 37658242 37658522 -80204105 - AluY SINE Alu -18 293 1 2015 106 31 20 chr9 37658522 37658814 -80203813 - AluSx SINE Alu -17 295 1 15139 101 43 9 chr9 37658814 37658912 -80203715 + Tigger1 DNA MER2_type 2164 2418 0 1786 187 3 16 chr9 37659204 37659519 -80203108 - AluJo SINE Alu -1 311 1 662 167 0 45 chr9 37659519 37659651 -80202976 - FLAM_A SINE Alu -7 126 1 1285 97 0 12 chr9 37659695 37659860 -80202767 + AluY SINE Alu 1 163 -148 910 262 75 36 chr9 37659925 37660230 -80202397 + LTR16C LTR ERVL 5 321 -170 1998 138 7 13 chr9 37660255 37660560 -80202067 - AluJo SINE Alu -8 304 2 283 229 24 0 chr9 37660561 37660644 -80201983 - L1P5 LINE L1 -705 5446 5362 272 227 53 0 chr9 37660699 37660774 -80201853 - L1MC4a LINE L1 -1 7807 7729 209 238 0 0 chr9 37660819 37660861 -80201766 + (TA)n Simple_repeat Simple_repeat 2 43 0 1085 202 91 8 chr9 37660899 37661142 -80201485 - MLT2F LTR ERVL -59 604 342 2335 81 7 13 chr9 37661412 37661722 -80200905 - AluSx SINE Alu -4 308 1 578 219 19 45 chr9 37662011 37662166 -80200461 + MIR SINE MIR 6 156 -106 948 128 0 8 chr9 37662166 37662299 -80200328 + FLAM_C SINE Alu 1 132 -11 285 218 46 23 chr9 37662301 37662388 -80200239 + MIR SINE MIR 146 234 -28 460 319 46 15 chr9 37662447 37662902 -80199725 - L1MEc LINE L1 -1727 4488 4020 937 309 67 70 chr9 37662909 37662996 -80199631 - L1MEc LINE L1 -2483 3732 3646 2291 40 14 14 chr9 37662996 37663272 -80199355 + AluY SINE Alu 1 276 -35 251 0 59 0 chr9 37663277 37663311 -80199316 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 937 309 67 70 chr9 37663311 37663557 -80199070 - L1MEc LINE L1 -2573 3642 3397 2466 57 24 0 chr9 37663557 37663854 -80198773 - AluY SINE Alu -7 304 1 937 309 67 70 chr9 37663854 37663950 -80198677 - L1MEc LINE L1 -2818 3397 3302 2164 135 0 3 chr9 37663950 37664262 -80198365 - AluSx SINE Alu -1 311 1 937 309 67 70 chr9 37664262 37664305 -80198322 - L1MEc LINE L1 -2913 3302 3260 2135 125 0 35 chr9 37664305 37664624 -80198003 - AluJb SINE Alu -2 310 3 937 309 67 70 chr9 37664624 37664797 -80197830 - L1MEc LINE L1 -2955 3260 3093 408 280 6 19 chr9 37664892 37664908 -80197719 - L1MA10 LINE L1 0 6334 6319 748 239 22 0 chr9 37664908 37665088 -80197539 - L1ME1 LINE L1 -4 6162 5979 542 146 10 39 chr9 37665120 37665223 -80197404 - Tigger5 DNA MER2_type 0 2323 2224 345 143 0 18 chr9 37665217 37665273 -80197354 - Tigger5 DNA MER2_type -2268 55 1 * 492 320 68 37 chr9 37665290 37665584 -80197043 - L1MEc LINE L1 -3981 2415 2113 2461 78 0 0 chr9 37665742 37666037 -80196590 - AluSq SINE Alu -18 295 1 542 304 168 49 chr9 37666416 37667028 -80195599 - HAL1 LINE L1 -905 1602 918 981 142 75 47 chr9 37667463 37667675 -80194952 - MER20 DNA MER1_type -1 218 1 541 93 0 0 chr9 37668234 37668309 -80194318 + Alu SINE Alu 2 76 -234 792 152 8 18 chr9 37668383 37668551 -80194076 + LTR7 LTR ERV1 1 218 -232 839 171 70 21 chr9 37668720 37668907 -80193720 + LTR7 LTR ERV1 255 450 0 2043 199 40 24 chr9 37668907 37669359 -80193268 + HERVH LTR ERV1 1 459 -7254 3839 221 14 35 chr9 37669417 37670590 -80192037 + HERVH LTR ERV1 800 1807 -4847 21 71 0 0 chr9 37670590 37670632 -80191995 + AT_rich Low_complexity Low_complexity 1 42 0 387 258 57 75 chr9 37671704 37671863 -80190764 - MER21B LTR ERV1 -154 709 554 5623 55 42 24 chr9 37671869 37672635 -80189992 - LTR17 LTR ERV1 0 780 1 2353 55 0 0 chr9 37672635 37672927 -80189700 - HERV17 LTR ERV1 0 8626 8335 289 53 0 0 chr9 37672917 37672955 -80189672 - HERV17 LTR ERV1 -1078 7548 7511 * 11809 41 3 0 chr9 37672949 37674392 -80188235 - HERV17 LTR ERV1 -2607 6019 4572 2411 203 6 52 chr9 37674392 37674933 -80187694 + HERVH LTR ERV1 1600 2115 -5598 1941 127 3 31 chr9 37675260 37675571 -80187056 + AluSx SINE Alu 1 303 0 2284 99 6 19 chr9 37675629 37675941 -80186686 + AluSq SINE Alu 1 308 -5 318 316 121 22 chr9 37676003 37676234 -80186393 + L3 LINE CR1 1323 1576 -1 401 272 12 75 chr9 37676413 37676485 -80186142 - MLT1K LTR MaLR -3 585 510 2400 74 10 0 chr9 37676485 37676782 -80185845 + AluSp SINE Alu 1 300 -13 401 272 12 75 chr9 37676782 37676882 -80185745 - MLT1K LTR MaLR -78 510 424 2162 100 62 0 chr9 37676883 37677173 -80185454 + AluSx SINE Alu 1 308 -4 549 95 0 0 chr9 37677182 37677266 -80185361 + L1MA3 LINE L1 6222 6305 0 2320 91 10 10 chr9 37677443 37677750 -80184877 + AluSq SINE Alu 1 307 -6 342 0 0 0 chr9 37679233 37679271 -80183356 + (GA)n Simple_repeat Simple_repeat 1 38 0 356 277 141 48 chr9 37679414 37679892 -80182735 + L2 LINE L2 2524 3041 -231 725 230 136 25 chr9 37679926 37680161 -80182466 - MIR SINE MIR 0 262 2 409 121 0 0 chr9 37680313 37680371 -80182256 + AluJ/FLAM SINE Alu 1 58 -244 767 168 105 37 chr9 37683271 37683461 -80179166 + MER97c DNA MER1_type? 1 203 -887 1769 158 13 17 chr9 37683461 37683759 -80178868 - AluJo SINE Alu -15 297 1 383 267 17 9 chr9 37684081 37684197 -80178430 - AluSq/x SINE Alu -185 117 1 330 340 27 0 chr9 37684207 37684357 -80178270 + L1M4 LINE L1 2336 2489 -3657 330 207 60 35 chr9 37684381 37684497 -80178130 + Charlie8 DNA MER1_type 85 203 -2214 1451 103 54 188 chr9 37684623 37684753 -80177874 - MER1B DNA MER1_type -2373 337 191 2006 135 10 22 chr9 37684753 37685064 -80177563 - AluSx SINE Alu -5 307 1 1451 103 54 188 chr9 37685064 37685322 -80177305 - MER1B DNA MER1_type -2519 191 1 1020 148 0 0 chr9 37685413 37685606 -80177021 - AluSg/x SINE Alu 0 324 132 2161 121 3 0 chr9 37685606 37685903 -80176724 - AluSq SINE Alu -6 307 10 242 301 155 39 chr9 37685914 37686120 -80176507 - L2 LINE L2 0 3272 3043 446 237 0 68 chr9 37686298 37686416 -80176211 - L2 LINE L2 -5 3267 3158 2080 133 6 15 chr9 37686430 37686769 -80175858 + MER1B DNA MER1_type 1 336 -1 578 149 79 0 chr9 37686994 37687108 -80175519 + FLAM_A SINE Alu 7 129 -13 391 263 131 0 chr9 37687120 37687280 -80175347 - MIR SINE MIR -38 224 44 1574 106 21 8 chr9 37687464 37687701 -80174926 + AluJb SINE Alu 1 240 -72 244 289 0 72 chr9 37688799 37688896 -80173731 + MIR SINE MIR 121 210 -52 285 230 92 23 chr9 37688945 37689032 -80173595 - MIR SINE MIR -147 115 23 641 311 241 30 chr9 37689177 37689809 -80172818 + L3 LINE CR1 612 1437 -140 2397 98 0 0 chr9 37689809 37690105 -80172522 - AluSx SINE Alu -16 296 1 641 311 241 30 chr9 37690105 37690243 -80172384 + L3 LINE CR1 1437 1545 -32 832 110 0 66 chr9 37691638 37691774 -80170853 - AluJb SINE Alu -185 127 1 324 279 109 24 chr9 37694495 37694660 -80167967 - MIR SINE MIR -60 202 24 183 80 0 0 chr9 37695330 37695355 -80167272 + (CAGGG)n Simple_repeat Simple_repeat 1 25 0 344 233 97 34 chr9 37695549 37695725 -80166902 + L1ME4a LINE L1 5760 5946 -175 490 155 0 0 chr9 37695762 37695846 -80166781 + AluJ/FLAM SINE Alu 2 85 -227 23 0 0 0 chr9 37695857 37695880 -80166747 + AT_rich Low_complexity Low_complexity 1 23 0 205 83 0 28 chr9 37695985 37696021 -80166606 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 218 274 48 71 chr9 37696068 37696152 -80166475 - L2 LINE L2 -9 3304 3223 269 176 118 35 chr9 37696152 37696237 -80166390 + L1ME4a LINE L1 6030 6121 0 631 64 0 0 chr9 37697080 37697158 -80165469 + AluSp SINE Alu 2 79 -234 1812 74 5 0 chr9 37697196 37697413 -80165214 + AluSp SINE Alu 81 298 -15 624 328 13 69 chr9 37697414 37697893 -80164734 - L2 LINE L2 -25 3247 2796 638 256 72 22 chr9 37697908 37698131 -80164496 - MLT1L LTR MaLR -24 591 358 1026 252 189 36 chr9 37698241 37698792 -80163835 - L2 LINE L2 -492 2822 2188 1627 213 158 20 chr9 37698900 37699342 -80163285 + MLT1D LTR MaLR 3 505 0 1734 140 9 62 chr9 37700142 37700463 -80162164 + AluJo SINE Alu 1 304 -8 197 337 43 22 chr9 37700513 37700605 -80162022 + L2 LINE L2 3199 3292 -21 2411 149 26 96 chr9 37700707 37700733 -80161894 + Charlie1 DNA MER1_type 1583 1609 -1152 2286 80 0 20 chr9 37700733 37701035 -80161592 - AluSg SINE Alu -14 296 1 2411 149 26 96 chr9 37701035 37701505 -80161122 + Charlie1 DNA MER1_type 1609 2026 -735 2123 98 0 17 chr9 37701505 37701828 -80160799 - AluSx SINE Alu 0 312 1 2411 149 26 96 chr9 37701828 37701974 -80160653 + Charlie1 DNA MER1_type 2026 2181 -580 2186 93 0 20 chr9 37701989 37702291 -80160336 - AluSx SINE Alu -14 298 3 1852 150 0 29 chr9 37702298 37702612 -80160015 - AluJb SINE Alu -5 307 3 464 202 0 0 chr9 37702691 37702780 -80159847 + AluS SINE Alu 221 309 0 1461 136 22 0 chr9 37702911 37703139 -80159488 - Tigger3(Golem) DNA MER2_type 0 3029 2797 1536 132 4 43 chr9 37703144 37703424 -80159203 - AluJo SINE Alu -30 282 14 206 299 45 0 chr9 37703732 37703799 -80158828 - L2 LINE L2 -218 3054 2985 1518 74 9 32 chr9 37703812 37704029 -80158598 - AluY SINE Alu -15 296 85 * 2312 92 0 0 chr9 37704028 37704333 -80158294 - AluSx SINE Alu -7 305 1 317 310 63 25 chr9 37704625 37704783 -80157844 + L2 LINE L2 3141 3304 -9 1502 170 108 0 chr9 37704794 37705071 -80157556 + 7SLRNA srpRNA srpRNA 1 307 -13 204 179 0 0 chr9 37705089 37705103 -80157524 + A-rich Low_complexity Low_complexity 5 18 -25 2122 103 0 3 chr9 37705103 37705395 -80157232 + AluSx SINE Alu 21 311 -1 204 179 0 0 chr9 37705395 37705419 -80157208 + A-rich Low_complexity Low_complexity 17 43 0 207 315 68 62 chr9 37705456 37705602 -80157025 + L2 LINE L2 2625 2771 -543 390 283 14 55 chr9 37705721 37705778 -80156849 + L2 LINE L2 3127 3185 -87 1684 168 0 7 chr9 37705778 37706058 -80156569 - AluJb SINE Alu 0 312 35 390 283 14 55 chr9 37706058 37706145 -80156482 + L2 LINE L2 3185 3265 -7 203 344 6 28 chr9 37707562 37707742 -80154885 + GA-rich Low_complexity Low_complexity 3 178 0 2353 75 0 10 chr9 37708007 37708312 -80154315 - AluSp SINE Alu -11 302 1 245 206 32 16 chr9 37708425 37708488 -80154139 + Charlie8 DNA MER1_type 1360 1423 -994 243 233 117 29 chr9 37709604 37709707 -80152920 - L2 LINE L2 -93 3179 3068 1926 107 33 13 chr9 37709871 37710171 -80152456 - AluSx SINE Alu -6 306 1 2453 52 0 16 chr9 37711084 37711392 -80151235 + AluY SINE Alu 2 304 -7 802 95 0 0 chr9 37711732 37711837 -80150790 - AluSg SINE Alu -179 131 27 288 165 0 35 chr9 37711927 37712012 -80150615 + CT-rich Low_complexity Low_complexity 4 85 0 1388 140 8 47 chr9 37712448 37712705 -80149922 + AluJo SINE Alu 1 247 -65 945 208 0 0 chr9 37713392 37713546 -80149081 - FRAM SINE Alu -12 154 1 34 0 0 0 chr9 37714148 37714182 -80148445 + AT_rich Low_complexity Low_complexity 1 34 0 809 185 129 31 chr9 37714267 37714559 -80148068 - MLT1D LTR MaLR -63 404 1 254 71 0 24 chr9 37714606 37714648 -80147979 + (TG)n Simple_repeat Simple_repeat 2 42 0 262 327 0 10 chr9 37716290 37716394 -80146233 + GA-rich Low_complexity Low_complexity 1 103 0 626 223 102 12 chr9 37716913 37717079 -80145548 + MER5A DNA MER1_type 9 189 0 2205 98 3 0 chr9 37718989 37719286 -80143341 + AluSq SINE Alu 1 298 -15 693 183 48 0 chr9 37719549 37719675 -80142952 + FLAM_A SINE Alu 2 133 0 636 261 31 17 chr9 37719966 37720144 -80142483 + MIR SINE MIR 4 181 -62 294 308 8 42 chr9 37720208 37720328 -80142299 + MER5A DNA MER1_type 68 183 -6 22 35 0 0 chr9 37723052 37723081 -80139546 + GC_rich Low_complexity Low_complexity 1 29 0 231 222 19 56 chr9 37723755 37723863 -80138764 + (CCCCG)n Simple_repeat Simple_repeat 1 104 0 * 232 224 40 0 chr9 37723789 37723865 -80138762 + C-rich Low_complexity Low_complexity 1 79 0 219 247 24 47 chr9 37724134 37724219 -80138408 + G-rich Low_complexity Low_complexity 1 83 0 739 158 0 8 chr9 37724730 37724850 -80137777 - FLAM_A SINE Alu -12 121 3 581 286 66 96 chr9 37724861 37725374 -80137253 + L2 LINE L2 2766 3268 -4 1429 171 35 43 chr9 37725428 37725826 -80136801 - Charlie1 DNA MER1_type -16 2745 2351 2139 96 7 0 chr9 37725827 37726136 -80136491 - AluSx SINE Alu 0 311 1 1211 139 0 0 chr9 37726139 37726326 -80136301 - AluSg/x SINE Alu 0 310 124 2237 100 0 7 chr9 37726326 37726636 -80135991 - AluY SINE Alu -3 308 1 1571 178 0 30 chr9 37726643 37726947 -80135680 - AluJb SINE Alu -17 295 1 2778 150 26 89 chr9 37726947 37727041 -80135586 - Charlie1 DNA MER1_type -480 2281 2183 2202 92 0 20 chr9 37727041 37727345 -80135282 + AluSx SINE Alu 1 298 -14 2778 150 26 89 chr9 37727345 37727506 -80135121 - Charlie1 DNA MER1_type -578 2183 2013 2123 98 0 17 chr9 37727506 37727829 -80134798 + AluSx SINE Alu 1 312 0 2778 150 26 89 chr9 37727829 37728298 -80134329 - Charlie1 DNA MER1_type -748 2013 1602 2277 80 0 20 chr9 37728299 37728600 -80134027 + AluSg SINE Alu 1 295 -15 991 117 34 50 chr9 37728600 37728779 -80133848 - AluSg/x SINE Alu -3 309 134 579 187 19 0 chr9 37728779 37728886 -80133741 - Charlie1 DNA MER1_type -2652 109 1 239 175 159 0 chr9 37729009 37729072 -80133555 + L3 LINE CR1 1432 1504 -73 212 109 130 0 chr9 37729192 37729238 -80133389 + L2 LINE L2 3221 3272 0 836 179 0 0 chr9 37729307 37729452 -80133175 - FRAM SINE Alu -23 153 9 210 322 17 35 chr9 37732693 37732867 -80129760 + GA-rich Low_complexity Low_complexity 5 175 0 582 303 212 0 chr9 37733864 37734204 -80128423 - L2 LINE L2 -5 3308 2897 822 278 63 59 chr9 37734274 37734324 -80128303 - L2 LINE L2 -565 2749 2701 1484 169 26 11 chr9 37734324 37734591 -80128036 - AluJo SINE Alu -39 273 3 822 278 63 59 chr9 37734591 37735029 -80127598 - L2 LINE L2 -613 2701 2259 190 216 0 0 chr9 37735270 37735307 -80127320 - L2 LINE L2 -996 2318 2282 2257 77 0 0 chr9 37735501 37735788 -80126839 - AluSg SINE Alu 0 310 24 247 294 75 27 chr9 37735833 37735979 -80126648 - L2 LINE L2 -1303 2011 1859 1693 118 16 0 chr9 37736044 37736289 -80126338 + AluSx SINE Alu 6 254 -58 270 257 156 0 chr9 37741753 37741862 -80120765 - MER112 DNA MER1_type -131 129 4 1490 70 0 0 chr9 37742132 37742356 -80120271 + AluSc SINE Alu 98 321 0 2600 32 3 0 chr9 37742627 37742937 -80119690 + AluY SINE Alu 1 311 0 2297 73 3 38 chr9 37742951 37743268 -80119359 + AluY SINE Alu 1 306 -5 2140 94 0 19 chr9 37745384 37745691 -80116936 + AluSc SINE Alu 1 301 -8 309 298 122 16 chr9 37746403 37746422 -80116205 + HAL1 LINE L1 1069 1085 -1422 2101 125 7 0 chr9 37746422 37746726 -80115901 + AluSx SINE Alu 1 306 -6 309 298 122 16 chr9 37746726 37746894 -80115733 + HAL1 LINE L1 1085 1276 -1231 1559 95 70 11 chr9 37748816 37749089 -80113538 + L1MA5A LINE L1 6008 6296 -1 902 143 0 0 chr9 37749094 37749227 -80113400 + FLAM_C SINE Alu 1 133 0 192 289 44 22 chr9 37749960 37750050 -80112577 - MIR SINE MIR -98 164 73 680 134 18 0 chr9 37753640 37753752 -80108875 - AluSg/x SINE Alu -4 306 193 182 306 129 34 chr9 37755584 37755731 -80106896 - MIR SINE MIR -62 200 40 2436 77 3 7 chr9 37756124 37756423 -80106204 - AluSp SINE Alu -15 298 1 453 248 56 8 chr9 37757413 37757538 -80105089 + L2 LINE L2 3159 3289 -24 2385 76 14 0 chr9 37758940 37759228 -80103399 - AluY SINE Alu -19 292 1 182 311 95 14 chr9 37759518 37759592 -80103035 + MIR3 SINE MIR 97 176 -32 216 309 57 73 chr9 37761775 37761898 -80100729 - L2 LINE L2 -1 3271 3151 483 252 193 18 chr9 37762070 37762288 -80100339 - MIR SINE MIR 0 262 7 227 325 78 34 chr9 37762318 37762613 -80100014 - L2 LINE L2 -347 2967 2660 211 154 111 51 chr9 37765025 37765142 -80097485 + (CCCGG)n Simple_repeat Simple_repeat 4 127 0 573 318 178 46 chr9 37766566 37766670 -80095957 + L3 LINE CR1 634 723 -854 496 220 113 6 chr9 37766670 37766829 -80095798 - MER69A DNA AcHobo 0 177 2 573 318 178 46 chr9 37766829 37767008 -80095619 + L3 LINE CR1 723 877 -700 1652 137 16 23 chr9 37767008 37767264 -80095363 - AluJb SINE Alu -24 288 35 573 318 178 46 chr9 37767264 37767614 -80095013 + L3 LINE CR1 877 1179 -398 1876 179 3 0 chr9 37767614 37767910 -80094717 - AluJb SINE Alu -12 300 4 573 318 178 46 chr9 37767910 37768108 -80094519 + L3 LINE CR1 1179 1577 0 210 44 44 22 chr9 37768847 37768892 -80093735 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 227 269 30 15 chr9 37770540 37770607 -80092020 - L2 LINE L2 -82 3190 3123 1995 68 4 20 chr9 37774362 37774612 -80088015 - AluY SINE Alu -60 251 6 384 345 138 24 chr9 37775172 37775655 -80086972 + L2 LINE L2 2671 3207 -65 1296 176 149 7 chr9 37775887 37776188 -80086439 - MER2 DNA MER2_type 0 344 1 881 245 30 9 chr9 37776221 37776454 -80086173 + MIR SINE MIR 10 247 -15 216 289 84 12 chr9 37777133 37777216 -80085411 + L2 LINE L2 3180 3268 -4 2329 101 0 9 chr9 37778128 37778444 -80084183 - AluSq SINE Alu 0 313 1 23 0 0 0 chr9 37778565 37778588 -80084039 + AT_rich Low_complexity Low_complexity 1 23 0 310 258 83 30 chr9 37778886 37779018 -80083609 + MIR SINE MIR 70 208 -54 2332 103 7 7 chr9 37779326 37779636 -80082991 + AluSq SINE Alu 1 310 -3 242 250 0 0 chr9 37779840 37779888 -80082739 + L2 LINE L2 3265 3312 -1 216 0 0 0 chr9 37782331 37782355 -80080272 + (CCG)n Simple_repeat Simple_repeat 3 26 0 808 243 80 0 chr9 37788111 37788337 -80074290 + MIR SINE MIR 18 261 -1 2152 111 3 46 chr9 37788482 37788833 -80073794 - MER1B DNA MER1_type 0 337 2 27 0 0 0 chr9 37790925 37790952 -80071675 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chr9 37791596 37791620 -80071007 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2180 127 10 16 chr9 37792302 37792616 -80070011 + AluSx SINE Alu 1 312 0 201 268 0 0 chr9 37792918 37792974 -80069653 + T-rich Low_complexity Low_complexity 1 56 0 827 174 139 0 chr9 37793319 37793491 -80069136 - MER20 DNA MER1_type -1 218 23 419 279 78 0 chr9 37793597 37793726 -80068901 + MER5A DNA MER1_type 7 145 -44 1882 163 3 23 chr9 37794409 37794739 -80067888 + AluJb SINE Alu 1 312 0 1586 106 62 13 chr9 37794891 37795117 -80067510 + AluSx SINE Alu 1 237 -75 509 300 80 30 chr9 37795214 37795477 -80067150 + L3 LINE CR1 1214 1489 -88 413 341 29 0 chr9 37795923 37796061 -80066566 - MIR3 SINE MIR -64 144 3 2469 112 0 0 chr9 37796619 37796931 -80065696 + AluSx SINE Alu 1 312 0 818 177 7 0 chr9 37797026 37797167 -80065460 + AluJb SINE Alu 171 312 0 2935 187 24 89 chr9 37797516 37797863 -80064764 - L1ME2 LINE L1 0 6164 5796 2098 134 10 0 chr9 37797863 37798161 -80064466 + AluSx SINE Alu 1 301 -11 2935 187 24 89 chr9 37798161 37798399 -80064228 - L1ME2 LINE L1 -368 5796 5544 2044 157 0 0 chr9 37798399 37798692 -80063935 + AluJb SINE Alu 6 298 -14 2935 187 24 89 chr9 37798692 37798845 -80063782 - L1ME2 LINE L1 -620 5544 5383 2376 92 16 0 chr9 37798845 37799149 -80063478 - AluY SINE Alu -2 309 1 2935 187 24 89 chr9 37799149 37799679 -80062948 - L1ME2 LINE L1 -781 5383 4990 404 257 114 0 chr9 37799855 37799960 -80062667 - L2 LINE L2 -15 3298 3182 189 0 0 0 chr9 37800304 37800325 -80062302 + (T)n Simple_repeat Simple_repeat 1 21 0 276 297 40 30 chr9 37800679 37800780 -80061847 - MER117 DNA MER1_type -8 189 88 1977 116 11 4 chr9 37800853 37801121 -80061506 - AluSx SINE Alu -42 270 1 1572 136 163 0 chr9 37801124 37801382 -80061245 - AluJb SINE Alu -12 300 1 1001 269 113 112 chr9 37802404 37803513 -80059114 - L2 LINE L2 -2 3270 2159 423 0 0 0 chr9 37803513 37803560 -80059067 + (GA)n Simple_repeat Simple_repeat 1 47 0 1001 269 113 112 chr9 37803560 37803703 -80058924 - L2 LINE L2 -1113 2159 2018 411 309 65 57 chr9 37805181 37805517 -80057110 - L2 LINE L2 -1082 2232 1894 2564 47 7 0 chr9 37805532 37805830 -80056797 + AluY SINE Alu 1 300 -11 182 54 0 81 chr9 37805845 37805882 -80056745 - L2 LINE L2 -8 3305 3272 1996 147 10 16 chr9 37806127 37806441 -80056186 + AluJb SINE Alu 1 312 0 2326 109 3 0 chr9 37806519 37806822 -80055805 - AluSx SINE Alu -8 304 1 43 0 0 0 chr9 37806831 37806874 -80055753 + AT_rich Low_complexity Low_complexity 1 43 0 818 130 17 0 chr9 37806874 37806989 -80055638 - FLAM_C SINE Alu -26 117 1 2521 50 10 0 chr9 37807466 37807764 -80054863 + AluY SINE Alu 1 301 -10 767 232 197 27 chr9 37808205 37808571 -80054056 - LTR33A LTR ERVL -8 515 88 2045 149 3 3 chr9 37809305 37809607 -80053020 - AluSx SINE Alu -10 302 1 2415 84 0 0 chr9 37809734 37810031 -80052596 + AluY SINE Alu 1 297 -14 2527 81 0 0 chr9 37810142 37810449 -80052178 - AluY SINE Alu -4 307 1 23 0 0 0 chr9 37810495 37810518 -80052109 + AT_rich Low_complexity Low_complexity 1 23 0 798 155 9 0 chr9 37810523 37810639 -80051988 - FLAM_C SINE Alu -16 117 1 2377 82 0 7 chr9 37811038 37811330 -80051297 + AluSp SINE Alu 1 290 -23 1540 180 25 14 chr9 37812770 37813048 -80049579 - AluJo SINE Alu -21 291 11 1862 161 23 3 chr9 37813609 37813738 -80048889 + AluJb SINE Alu 1 126 -186 221 0 35 0 chr9 37813738 37813767 -80048860 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1862 161 23 3 chr9 37813767 37813941 -80048686 + AluJb SINE Alu 126 310 -2 237 226 18 9 chr9 37814395 37814464 -80048163 + G-rich Low_complexity Low_complexity 1 69 0 434 240 24 32 chr9 37814466 37814591 -80048036 + MER20B DNA MER1_type 57 180 -603 25 0 0 0 chr9 37814748 37814773 -80047854 + AT_rich Low_complexity Low_complexity 1 25 0 226 309 21 0 chr9 37814897 37814994 -80047633 + MER20B DNA MER1_type 519 617 -166 1273 125 0 0 chr9 37814995 37815179 -80047448 - AluSg/x SINE Alu 0 312 129 543 241 19 0 chr9 37815179 37815337 -80047290 + MER20B DNA MER1_type 623 783 0 2380 98 3 0 chr9 37815460 37815766 -80046861 - AluSx SINE Alu -5 307 1 2397 91 0 0 chr9 37815831 37816129 -80046498 - AluSp SINE Alu -15 298 1 5649 117 83 16 chr9 37816219 37817470 -80045157 - L1MA6 LINE L1 0 6300 4958 2126 92 6 63 chr9 37817471 37817788 -80044839 - AluSq SINE Alu -14 299 1 640 219 0 0 chr9 37817814 37817928 -80044699 - FLAM_A SINE Alu -19 114 1 1289 224 82 24 chr9 37817930 37818310 -80044317 - Charlie2 DNA MER1_type -2337 445 44 325 289 52 59 chr9 37818536 37818671 -80043956 - L2 LINE L2 -558 2756 2623 261 269 37 0 chr9 37818715 37818823 -80043804 + MER102a DNA MER1_type 219 330 0 261 365 72 0 chr9 37818846 37819013 -80043614 + L2 LINE L2 2491 2669 -645 2328 78 0 17 chr9 37819834 37820130 -80042497 + AluY SINE Alu 1 291 -20 1607 93 9 22 chr9 37820130 37820356 -80042271 - AluY SINE Alu -20 291 69 2217 117 0 0 chr9 37820493 37820784 -80041843 - AluSx SINE Alu -21 291 1 333 280 168 8 chr9 37820979 37821104 -80041523 - L1M4c LINE L1 -4043 2341 2197 2428 97 10 0 chr9 37821541 37821850 -80040777 + AluSx SINE Alu 1 312 0 2027 133 37 0 chr9 37822273 37822573 -80040054 - AluSx SINE Alu -1 311 1 738 156 23 0 chr9 37822581 37822709 -80039918 - FLAM_A SINE Alu -2 140 10 389 269 16 113 chr9 37823067 37823253 -80039374 + MIR3 SINE MIR 34 201 -7 185 351 85 0 chr9 37823578 37823672 -80038955 + L2 LINE L2 3195 3296 -17 206 282 0 51 chr9 37825406 37825523 -80037104 + C-rich Low_complexity Low_complexity 2 112 0 196 192 135 0 chr9 37827289 37827341 -80035286 - L2 LINE L2 -259 3054 2996 198 0 0 0 chr9 37828037 37828059 -80034568 + (TG)n Simple_repeat Simple_repeat 1 22 0 444 328 79 4 chr9 37828236 37828489 -80034138 + L2 LINE L2 2706 2977 -337 189 197 49 49 chr9 37828618 37828679 -80033948 + L3 LINE CR1 1513 1573 -4 620 272 37 52 chr9 37829080 37829352 -80033275 - L2 LINE L2 -4 3309 3042 1946 134 28 11 chr9 37829399 37829682 -80032945 - AluJb SINE Alu -19 293 6 261 333 167 16 chr9 37830249 37830375 -80032252 + L2 LINE L2 3124 3268 -4 200 108 0 27 chr9 37830931 37830968 -80031659 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 769 207 34 0 chr9 37831021 37831200 -80031427 + Charlie1 DNA MER1_type 52 236 -2525 749 145 7 0 chr9 37831188 37831326 -80031301 + Charlie1 DNA MER1_type 2622 2760 -1 * 350 42 21 0 chr9 37832615 37832663 -80029964 + (CA)n Simple_repeat Simple_repeat 2 50 0 2765 3 0 3 chr9 37836311 37836606 -80026021 - AluYa5 SINE Alu -17 294 1 1967 157 3 0 chr9 37837436 37837735 -80024892 - AluJb SINE Alu -12 300 1 482 268 43 8 chr9 37841015 37841155 -80021472 + MIR SINE MIR 31 176 -32 357 152 0 51 chr9 37841227 37841306 -80021321 - L1MC4 LINE L1 -193 7849 7775 221 283 0 0 chr9 37841468 37841514 -80021113 - L2 LINE L2 -1 3312 3267 340 341 0 0 chr9 37844675 37844845 -80017782 + (CAGAGA)n Simple_repeat Simple_repeat 2 171 0 235 214 0 0 chr9 37845060 37845116 -80017511 + (CTG)n Simple_repeat Simple_repeat 3 58 0 216 369 138 0 chr9 37847241 37847371 -80015256 + MIR3 SINE MIR 20 167 -41 2677 36 0 0 chr9 37849148 37849449 -80013178 - AluY SINE Alu 0 311 11 210 71 0 0 chr9 37849584 37849612 -80013015 + (T)n Simple_repeat Simple_repeat 1 28 0 206 204 102 0 chr9 37849613 37849662 -80012965 + L2 LINE L2 3217 3270 -2 238 315 47 31 chr9 37849882 37850009 -80012618 - L3 LINE CR1 -128 1449 1321 296 280 31 73 chr9 37850227 37850411 -80012216 - MIR SINE MIR -50 212 35 573 346 139 28 chr9 37850820 37851488 -80011139 + L2 LINE L2 1298 2039 -1275 2123 94 3 46 chr9 37852700 37853007 -80009620 - AluY SINE Alu -17 294 1 397 324 73 48 chr9 37854208 37854480 -80008147 + L2 LINE L2 2993 3271 -1 664 312 26 99 chr9 37855269 37855603 -80007024 + L2 LINE L2 2242 2504 -810 2261 105 13 3 chr9 37855603 37855909 -80006718 - AluSx SINE Alu -3 309 1 664 312 26 99 chr9 37855909 37856237 -80006390 + L2 LINE L2 2504 2855 -459 369 140 0 0 chr9 37856560 37856617 -80006010 + L2 LINE L2 3256 3312 -1 1525 179 43 14 chr9 37856882 37857162 -80005465 - AluJb SINE Alu -19 293 6 2718 51 0 0 chr9 37857872 37858183 -80004444 - AluY SINE Alu 0 311 1 428 235 15 61 chr9 37859871 37860003 -80002624 + L2 LINE L2 2174 2299 -1015 2382 103 0 0 chr9 37860007 37860309 -80002318 - AluSx SINE Alu -10 302 1 2258 113 3 0 chr9 37861213 37861524 -80001103 + AluSx SINE Alu 1 312 0 450 0 0 0 chr9 37861535 37861585 -80001042 + (CTA)n Simple_repeat Simple_repeat 3 52 0 25 0 0 0 chr9 37862527 37862552 -80000075 + GC_rich Low_complexity Low_complexity 1 25 0 506 328 0 0 chr9 37862633 37862878 -79999749 + C-rich Low_complexity Low_complexity 1 245 0 497 237 17 17 chr9 37863737 37863855 -79998772 - MIR SINE MIR -66 142 25 689 238 19 48 chr9 37864707 37864913 -79997714 - ERVL LTR ERVL -1472 4292 4093 390 121 0 0 chr9 37865357 37865423 -79997204 + (TG)n Simple_repeat Simple_repeat 1 66 0 360 0 0 0 chr9 37867237 37867277 -79995350 + (CA)n Simple_repeat Simple_repeat 2 41 0 240 114 0 0 chr9 37867411 37867446 -79995181 + MIR SINE MIR 113 147 -61 210 37 0 0 chr9 37867448 37867475 -79995152 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 241 276 0 0 chr9 37870456 37870514 -79992113 - L2 LINE L2 -27 3245 3188 204 289 129 12 chr9 37870621 37870830 -79991797 - L2 LINE L2 -285 2987 2721 259 232 18 0 chr9 37870883 37870939 -79991688 + L2 LINE L2 3179 3235 -37 1103 288 62 70 chr9 37871521 37872220 -79990407 + L2 LINE L2 1981 2673 -641 304 237 144 0 chr9 37873053 37873150 -79989477 - L2 LINE L2 -3 3310 3200 215 316 107 15 chr9 37873321 37873527 -79989100 + L3 LINE CR1 1101 1325 -252 242 231 116 74 chr9 37873603 37873724 -79988903 - L2 LINE L2 0 3313 3188 451 333 20 0 chr9 37876199 37876352 -79986275 - L3 LINE CR1 -99 1478 1323 546 142 194 15 chr9 37876416 37876550 -79986077 - L1MC2 LINE L1 0 6344 6187 451 264 0 0 chr9 37876740 37876850 -79985777 - L3 LINE CR1 -568 1009 900 2107 127 0 3 chr9 37876977 37877269 -79985358 - AluSx SINE Alu -21 291 1 249 344 47 3 chr9 37877370 37877595 -79985032 - L3 LINE CR1 -708 869 578 214 280 0 27 chr9 37879273 37879348 -79983279 + G-rich Low_complexity Low_complexity 5 77 0 2493 93 0 0 chr9 37881868 37882178 -79980449 - AluSg SINE Alu 0 310 1 197 277 169 81 chr9 37882669 37882817 -79979810 - MIR SINE MIR -70 192 32 1726 125 21 113 chr9 37884315 37884651 -79977976 - AluJb SINE Alu -7 305 1 213 94 0 0 chr9 37887859 37887891 -79974736 + (TG)n Simple_repeat Simple_repeat 2 33 0 2484 75 0 0 chr9 37888605 37888899 -79973728 - AluSp SINE Alu -19 294 1 251 326 146 16 chr9 37889516 37890078 -79972549 - L2 LINE L2 -357 2957 2323 185 288 121 38 chr9 37890732 37890864 -79971763 - L2 LINE L2 -450 2864 2722 967 253 237 27 chr9 37890864 37891298 -79971329 - MLT2F LTR ERVL 0 663 115 2095 114 50 3 chr9 37891298 37891596 -79971031 - AluSx SINE Alu 0 312 1 967 253 237 27 chr9 37891596 37891647 -79970980 - MLT2F LTR ERVL -548 115 76 1289 242 36 62 chr9 37891811 37892229 -79970398 + MLT1I LTR MaLR 1 407 -2 361 268 16 24 chr9 37893254 37893381 -79969246 + MIR3 SINE MIR 71 196 -12 352 239 54 43 chr9 37893584 37893676 -79968951 - L2 LINE L2 0 3313 3221 281 311 19 0 chr9 37894806 37894909 -79967718 + MIR SINE MIR 47 151 -111 621 184 53 0 chr9 37895301 37895415 -79967212 - L2 LINE L2 0 3313 3194 1027 180 0 0 chr9 37896217 37896378 -79966249 + FRAM SINE Alu 5 165 -11 532 304 128 16 chr9 37896749 37897006 -79965621 - MLT1I LTR MaLR -7 402 117 493 284 142 35 chr9 37897641 37897873 -79964754 + MIR SINE MIR 4 260 -2 707 142 16 8 chr9 37899035 37899162 -79963465 + Tigger2 DNA MER2_type 1 128 -2590 * 1591 138 157 3 chr9 37899158 37899483 -79963144 + Tigger2 DNA MER2_type 2344 2718 0 1336 277 35 49 chr9 37899700 37900005 -79962622 - L1ME4a LINE L1 -1 6120 5812 2089 145 14 0 chr9 37900005 37900302 -79962325 + AluJo SINE Alu 1 301 -11 1336 277 35 49 chr9 37900302 37900646 -79961981 - L1ME4a LINE L1 -309 5812 5480 204 40 0 0 chr9 37901228 37901253 -79961374 + (CTG)n Simple_repeat Simple_repeat 1 25 0 2791 84 82 10 chr9 37901352 37901766 -79960861 + MLT2A1 LTR ERVL 1 444 0 308 320 78 47 chr9 37902149 37902508 -79960119 - L2 LINE L2 -360 2954 2585 398 208 48 28 chr9 37903697 37903817 -79958810 + MIR3 SINE MIR 36 160 -48 430 243 62 14 chr9 37903866 37904010 -79958617 + MER103 DNA DNA 13 163 -3 599 184 293 7 chr9 37904088 37904235 -79958392 - MER5A DNA MER1_type 0 189 1 240 217 0 0 chr9 37904282 37904328 -79958299 + L2 LINE L2 2924 2969 -303 235 287 217 57 chr9 37904604 37904761 -79957866 - MIR3 SINE MIR -3 205 24 322 245 11 69 chr9 37905245 37905433 -79957194 + C-rich Low_complexity Low_complexity 4 180 0 1057 234 66 18 chr9 37905581 37905915 -79956712 - L1ME1 LINE L1 -5 6161 5812 298 105 0 151 chr9 37905911 37905997 -79956630 - L1MB7 LINE L1 0 6184 6112 * 252 96 135 0 chr9 37905986 37906038 -79956589 + L1MB8 LINE L1 6079 6137 -41 * 3807 153 35 50 chr9 37906057 37906712 -79955915 - L1MB8 LINE L1 -50 6128 5486 2197 119 0 3 chr9 37906712 37907005 -79955622 + AluJb SINE Alu 1 292 -20 3807 153 35 50 chr9 37907005 37907144 -79955483 - L1MB8 LINE L1 -692 5486 5346 2004 172 0 7 chr9 37907164 37907472 -79955155 - AluSx SINE Alu -6 306 1 22 0 0 0 chr9 37907966 37907988 -79954639 + AT_rich Low_complexity Low_complexity 1 22 0 332 204 23 28 chr9 37908422 37908522 -79954105 - L1MB8 LINE L1 -1651 4495 4397 422 316 23 12 chr9 37908533 37908704 -79953923 - L1MEc LINE L1 -4548 1848 1676 1245 209 76 7 chr9 37958752 37959029 -79903598 - MLT2D LTR ERVL -118 296 1 1052 166 73 214 chr9 37959031 37959171 -79903456 + MLT1C LTR MaLR 44 202 -265 2300 83 0 7 chr9 37959171 37959473 -79903154 + AluSq SINE Alu 1 300 -13 1052 166 73 214 chr9 37959473 37959869 -79902758 + MLT1C LTR MaLR 202 466 -1 224 273 216 0 chr9 37960225 37960313 -79902314 - L2 LINE L2 -13 3259 3153 2233 116 0 0 chr9 37960546 37960856 -79901771 + AluSx SINE Alu 3 312 0 14774 119 13 18 chr9 37961160 37961373 -79901254 + Tigger1 DNA MER2_type 1 214 -2204 1490 149 67 8 chr9 37961373 37961628 -79900999 - AluJb SINE Alu -26 286 17 14774 119 13 18 chr9 37961628 37962593 -79900034 + Tigger1 DNA MER2_type 214 1182 -1236 2140 107 0 35 chr9 37962593 37962911 -79899716 + AluSx SINE Alu 1 307 -5 14774 119 13 18 chr9 37962911 37963223 -79899404 + Tigger1 DNA MER2_type 1182 1494 -924 2305 91 0 3 chr9 37963223 37963532 -79899095 + AluSc SINE Alu 1 308 -1 14774 119 13 18 chr9 37963532 37964280 -79898347 + Tigger1 DNA MER2_type 1494 2230 -188 318 51 0 0 chr9 37964277 37964316 -79898311 - tRNA-Thr-ACA tRNA tRNA -37 39 1 * 2031 104 4 0 chr9 37964341 37964659 -79897968 + AluSq SINE Alu 4 322 0 1826 150 7 7 chr9 37964673 37964979 -79897648 + AluJb SINE Alu 2 307 -5 2255 50 11 0 chr9 37964980 37965287 -79897340 + AluY SINE Alu 1 310 0 212 309 27 82 chr9 37965373 37965483 -79897144 - L2 LINE L2 -18 3254 3151 230 170 9 189 chr9 37965492 37965598 -79897029 + Charlie1 DNA MER1_type 6 92 -2669 954 202 34 0 chr9 37965605 37965783 -79896844 + MER82 DNA MER2_type 8 191 -462 * 1850 191 103 2 chr9 37965782 37966181 -79896446 + REP3 LTR ERV 124 562 0 245 234 62 76 chr9 37966815 37966849 -79895778 - L1ME4a LINE L1 -17 6104 6071 2222 93 0 7 chr9 37966849 37967151 -79895476 + AluSc SINE Alu 1 300 -9 245 234 62 76 chr9 37967151 37967261 -79895366 - L1ME4a LINE L1 -50 6071 5962 244 314 109 0 chr9 37967283 37967439 -79895188 - L1ME4a LINE L1 -211 5910 5738 489 268 32 79 chr9 37967484 37967674 -79894953 + MIR SINE MIR 1 181 -81 863 236 77 5 chr9 37967675 37967883 -79894744 + MER58A DNA MER1_type 1 223 -1 802 162 0 0 chr9 37968392 37968509 -79894118 + FLAM_C SINE Alu 1 117 -16 26 50 0 0 chr9 37968510 37968550 -79894077 + AT_rich Low_complexity Low_complexity 1 40 0 2059 115 0 10 chr9 37968554 37968849 -79893778 + AluSx SINE Alu 3 294 -18 1675 156 46 0 chr9 37968958 37969241 -79893386 + AluSx SINE Alu 1 296 -16 2180 113 3 0 chr9 37969243 37969554 -79893073 + AluSx SINE Alu 1 312 0 1500 176 13 36 chr9 37969737 37970044 -79892583 - AluJo SINE Alu -10 302 3 633 164 77 0 chr9 37970131 37970235 -79892392 + FLAM_A SINE Alu 11 122 -20 2146 110 0 7 chr9 37970506 37970815 -79891812 + AluSx SINE Alu 1 307 -5 809 134 0 24 chr9 37970840 37970967 -79891660 + FLAM_C SINE Alu 7 130 -13 372 77 0 0 chr9 37971246 37971298 -79891329 + (A)n Simple_repeat Simple_repeat 1 52 0 1699 174 0 3 chr9 37972461 37972743 -79889884 - AluJo SINE Alu -31 281 1 25 0 0 0 chr9 37972851 37972876 -79889751 + AT_rich Low_complexity Low_complexity 1 25 0 627 285 162 58 chr9 37973303 37973609 -79889018 - L2 LINE L2 -781 2533 2260 2395 56 0 7 chr9 37973609 37973915 -79888712 + AluY SINE Alu 1 304 -7 627 285 162 58 chr9 37973915 37974121 -79888506 - L2 LINE L2 -1054 2260 1968 1650 179 0 0 chr9 37974237 37974516 -79888111 + AluJo SINE Alu 1 279 -33 432 0 0 0 chr9 37974516 37974564 -79888063 + (CA)n Simple_repeat Simple_repeat 1 48 0 1800 113 77 0 chr9 37974698 37974972 -79887655 + AluSg SINE Alu 1 295 -15 2205 98 3 0 chr9 37975116 37975411 -79887216 + AluSx SINE Alu 1 296 -16 180 266 11 117 chr9 37975436 37975530 -79887097 + L2 LINE L2 2274 2357 -957 219 345 122 31 chr9 37975538 37975580 -79887047 + L2 LINE L2 2477 2514 -800 1558 110 8 61 chr9 37975580 37975844 -79886783 - AluSx SINE Alu -62 250 1 219 345 122 31 chr9 37975844 37975984 -79886643 + L2 LINE L2 2514 2640 -674 2488 62 0 0 chr9 37975984 37976293 -79886334 - AluY SINE Alu -2 309 1 219 345 122 31 chr9 37976293 37976463 -79886164 + L2 LINE L2 2640 2862 -452 2255 93 0 0 chr9 37976959 37977261 -79885366 + AluSx SINE Alu 1 302 -10 669 158 0 110 chr9 37977733 37977816 -79884811 - FLAM_A SINE Alu -171 131 69 2484 55 0 0 chr9 37977816 37978124 -79884503 + AluY SINE Alu 1 308 -3 669 158 0 110 chr9 37978124 37978186 -79884441 - FLAM_A SINE Alu -233 69 2 1527 196 0 3 chr9 37978370 37978661 -79883966 + AluJo SINE Alu 1 290 -22 2460 77 0 0 chr9 37978671 37978983 -79883644 + AluSx SINE Alu 1 312 0 350 352 151 21 chr9 37979000 37979384 -79883243 - L2 LINE L2 -792 2522 2089 2241 104 0 0 chr9 37979487 37979785 -79882842 - AluSx SINE Alu -14 298 1 1693 168 0 10 chr9 37979951 37980249 -79882378 - AluJb SINE Alu -17 295 1 1666 146 53 14 chr9 37980484 37980765 -79881862 - AluJb SINE Alu -20 292 1 581 45 0 0 chr9 37980783 37980850 -79881777 - U4 snRNA snRNA -78 67 1 216 0 0 0 chr9 37980916 37980940 -79881687 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2006 106 4 0 chr9 37980944 37981218 -79881409 - AluSx SINE Alu -37 275 1 2020 100 7 14 chr9 37981560 37981714 -79880913 - AluSx SINE Alu -23 289 136 2314 48 34 0 chr9 37981714 37982005 -79880622 - AluY SINE Alu -10 301 1 2020 100 7 14 chr9 37982005 37982141 -79880486 - AluSx SINE Alu -176 136 1 2010 161 0 56 chr9 37982333 37982402 -79880225 + MER1B DNA MER1_type 3 74 -2636 2136 91 23 26 chr9 37982402 37982710 -79879917 + AluSx SINE Alu 1 307 -5 2010 161 0 56 chr9 37982710 37982995 -79879632 + MER1B DNA MER1_type 74 337 0 433 223 66 66 chr9 37983165 37983240 -79879387 - MER117 DNA MER1_type 0 197 123 5927 62 31 17 chr9 37983240 37984009 -79878618 - LTR17 LTR ERV1 0 780 1 433 223 66 66 chr9 37984009 37984099 -79878528 - MER117 DNA MER1_type -73 124 32 1835 154 3 10 chr9 37984198 37984509 -79878118 + AluSx SINE Alu 1 309 -3 655 330 28 32 chr9 37984941 37985168 -79877459 + L3 LINE CR1 340 567 -1010 2036 104 28 0 chr9 37985168 37985456 -79877171 + AluSx SINE Alu 1 296 -16 655 330 28 32 chr9 37985456 37985510 -79877117 + L3 LINE CR1 567 620 -957 425 274 156 3 chr9 37985554 37985718 -79876909 + MIR SINE MIR 34 220 -42 340 324 9 19 chr9 37985827 37985935 -79876692 + L3 LINE CR1 1440 1546 -31 347 245 64 0 chr9 37986470 37986564 -79876063 - L1ME3A LINE L1 -13 6157 6058 2300 62 0 10 chr9 37986690 37986994 -79875633 - AluY SINE Alu -10 301 1 2013 166 100 66 chr9 37987021 37987063 -79875564 + MLT1D LTR MaLR 1 40 -465 2125 85 14 0 chr9 37987063 37987356 -79875271 - AluSg SINE Alu -13 297 1 2013 166 100 66 chr9 37987356 37987734 -79874893 + MLT1D LTR MaLR 40 443 -62 2637 39 0 0 chr9 37987734 37988045 -79874582 - AluY SINE Alu 0 311 1 2013 166 100 66 chr9 37988045 37988111 -79874516 + MLT1D LTR MaLR 443 505 0 516 301 34 70 chr9 37988135 37988331 -79874296 + L2 LINE L2 2271 2473 -841 900 186 6 12 chr9 37988331 37988498 -79874129 - FRAM SINE Alu 0 166 1 516 301 34 70 chr9 37988498 37988671 -79873956 + L2 LINE L2 2473 2715 -599 2213 116 0 3 chr9 37988671 37988982 -79873645 + AluSx SINE Alu 1 310 -2 516 301 34 70 chr9 37988982 37989027 -79873600 + L2 LINE L2 2715 2760 -554 433 169 0 0 chr9 37989303 37989374 -79873253 - AluJ/FLAM SINE Alu -213 99 29 598 178 0 25 chr9 37989422 37989540 -79873087 + FLAM_A SINE Alu 9 123 -19 2757 16 0 0 chr9 37990800 37991111 -79871516 - AluY SINE Alu 0 311 1 1511 93 15 0 chr9 37991504 37991708 -79870919 - AluSq SINE Alu -106 207 1 531 209 152 25 chr9 37991727 37991885 -79870742 + MIR SINE MIR 85 262 0 2272 94 13 0 chr9 37992089 37992396 -79870231 + AluSx SINE Alu 2 312 0 2113 102 7 7 chr9 37992408 37992711 -79869916 + AluSx SINE Alu 1 303 -9 231 174 72 0 chr9 37992767 37992836 -79869791 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 365 90 0 75 chr9 37992976 37993043 -79869584 - Alu SINE Alu 0 302 241 1623 115 15 15 chr9 37993162 37993422 -79869205 + AluSx SINE Alu 38 297 -15 2320 68 0 0 chr9 37993671 37993963 -79868664 - AluSq SINE Alu -21 292 1 1649 156 17 34 chr9 37994093 37994388 -79868239 - AluJo SINE Alu -22 290 1 1107 125 0 0 chr9 37994391 37994577 -79868050 - AluSg/x SINE Alu 0 312 134 2114 110 3 0 chr9 37994577 37994877 -79867750 - AluSx SINE Alu -11 301 1 1366 107 5 10 chr9 37995055 37995260 -79867367 + AluSq SINE Alu 1 204 -109 464 176 0 0 chr9 37995367 37995441 -79867186 + AluS SINE Alu 222 295 -16 236 122 73 0 chr9 37995487 37995528 -79867099 + L1MC4 LINE L1 6660 6703 -1339 194 128 0 21 chr9 37995529 37995560 -79867067 + (TA)n Simple_repeat Simple_repeat 2 33 -14 1749 136 0 11 chr9 37995560 37995832 -79866795 - AluSx SINE Alu -31 281 13 194 128 0 21 chr9 37995832 37995847 -79866780 + (TA)n Simple_repeat Simple_repeat 33 47 0 26 30 0 0 chr9 37996001 37996034 -79866593 + AT_rich Low_complexity Low_complexity 1 33 0 2208 94 0 3 chr9 37996436 37996734 -79865893 + AluSg SINE Alu 1 297 -13 1070 156 0 18 chr9 37997137 37997304 -79865323 + FAM SINE Alu 5 168 -7 208 356 131 18 chr9 37997441 37997663 -79864964 - L2 LINE L2 -153 3119 2873 2126 120 0 0 chr9 37997740 37998041 -79864586 + AluSx SINE Alu 1 301 -11 535 327 134 3 chr9 37998048 37998369 -79864258 - L2 LINE L2 -666 2648 2286 290 275 0 0 chr9 37998540 37998609 -79864018 + MIR3 SINE MIR 92 160 -48 2301 77 0 19 chr9 37998814 37999124 -79863503 - AluY SINE Alu -7 304 1 574 322 57 4 chr9 37999576 37999803 -79862824 + MIR SINE MIR 20 258 -4 2124 98 0 30 chr9 38000097 38000402 -79862225 + AluSq SINE Alu 1 296 -17 2414 69 3 0 chr9 38000671 38000976 -79861651 - AluSp SINE Alu -7 306 1 2387 72 0 3 chr9 38001366 38001672 -79860955 + AluSc SINE Alu 1 305 -4 2282 103 0 0 chr9 38001752 38002063 -79860564 + AluSx SINE Alu 1 311 -1 246 155 17 35 chr9 38002068 38002126 -79860501 + L1ME3 LINE L1 6100 6156 -6 201 35 35 0 chr9 38003016 38003045 -79859582 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 1942 121 40 0 chr9 38003045 38003318 -79859309 - AluSx SINE Alu -28 284 1 2206 91 49 0 chr9 38003440 38003725 -79858902 - AluSx SINE Alu -13 299 1 2352 90 0 13 chr9 38003765 38004065 -79858562 - AluSg SINE Alu -14 296 1 1894 167 6 6 chr9 38004457 38004769 -79857858 + AluJo SINE Alu 1 312 0 1602 146 63 8 chr9 38004907 38005160 -79857467 - AluJo SINE Alu -45 267 1 1970 167 0 0 chr9 38005377 38005670 -79856957 + AluJb SINE Alu 2 294 -18 2139 107 16 26 chr9 38005680 38005988 -79856639 + AluSx SINE Alu 1 305 -7 2315 89 0 3 chr9 38006003 38006294 -79856333 + AluSc SINE Alu 1 290 -19 2093 120 0 62 chr9 38006542 38006867 -79855760 - AluSx SINE Alu -7 305 1 2265 113 0 7 chr9 38007307 38007617 -79855010 + AluSc SINE Alu 2 309 0 9549 189 30 45 chr9 38007617 38008948 -79853679 + L1M2 LINE L1 3200 4460 -1840 2223 125 6 0 chr9 38008948 38009259 -79853368 + AluSq SINE Alu 1 313 0 9549 189 30 45 chr9 38009259 38010574 -79852053 + L1M2 LINE L1 4460 5793 -507 207 0 0 0 chr9 38010574 38010597 -79852030 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 215 0 0 chr9 38010596 38010661 -79851966 + (TA)n Simple_repeat Simple_repeat 1 65 0 2330 132 3 8 chr9 38010687 38011057 -79851570 + L1PB1 LINE L1 5784 6151 0 2151 123 3 0 chr9 38012220 38012513 -79850114 + AluSx SINE Alu 1 294 -18 1404 158 4 25 chr9 38013499 38013740 -79848887 + MER46A DNA MER2_type 1 236 0 2551 56 0 3 chr9 38015033 38015335 -79847292 - AluY SINE Alu -10 301 1 277 319 22 0 chr9 38015723 38015814 -79846813 + L2 LINE L2 1352 1444 -1870 856 231 110 127 chr9 38015817 38016934 -79845693 - L2 LINE L2 0 3313 2212 649 248 79 3 chr9 38016950 38017250 -79845377 - MLT1J LTR MaLR -18 493 97 1174 219 97 21 chr9 38017259 38017538 -79845089 - AluJo SINE Alu -2 300 1 468 139 0 30 chr9 38017552 38017653 -79844974 + (TTTC)n Simple_repeat Simple_repeat 3 100 0 300 88 263 0 chr9 38017653 38017710 -79844917 - HY3 scRNA scRNA -12 89 18 636 214 0 16 chr9 38017825 38017951 -79844676 + FLAM_C SINE Alu 2 125 -18 894 48 0 0 chr9 38017955 38018059 -79844568 + AluY SINE Alu 195 298 -13 1175 145 17 6 chr9 38018074 38018253 -79844374 + AluJo SINE Alu 113 293 -19 572 248 66 50 chr9 38018257 38018477 -79844150 - L2 LINE L2 -1145 2169 1943 2222 110 14 0 chr9 38018477 38018767 -79843860 + AluSx SINE Alu 1 294 -18 572 248 66 50 chr9 38018767 38018788 -79843839 - L2 LINE L2 -1371 1943 1924 2449 93 0 3 chr9 38019897 38020209 -79842418 - AluSx SINE Alu -1 311 1 26 0 0 0 chr9 38020500 38020526 -79842101 + AT_rich Low_complexity Low_complexity 1 26 0 416 110 12 37 chr9 38020550 38020632 -79841995 - L1MA8 LINE L1 -1 6290 6211 2402 91 10 0 chr9 38020668 38020966 -79841661 - AluSx SINE Alu -11 301 1 839 123 15 46 chr9 38020997 38021127 -79841500 - FLAM_C SINE Alu -16 127 2 2204 113 0 35 chr9 38022236 38022546 -79840081 + AluSx SINE Alu 1 299 -13 252 308 48 10 chr9 38022597 38022701 -79839926 + L1M4 LINE L1 4024 4131 -2015 192 209 52 96 chr9 38022763 38022878 -79839749 - MER5A DNA MER1_type -45 144 35 * 512 252 0 8 chr9 38022781 38022900 -79839727 + MER5B DNA MER1_type 60 177 -1 675 186 8 39 chr9 38022934 38023063 -79839564 - FLAM_A SINE Alu -8 125 1 2077 129 0 0 chr9 38023073 38023367 -79839260 - AluJb SINE Alu -18 294 1 364 267 99 89 chr9 38023431 38023838 -79838789 + L1M4 LINE L1 4339 4753 -1393 2072 136 0 3 chr9 38023838 38024133 -79838494 - AluJb SINE Alu -18 294 1 364 267 99 89 chr9 38024133 38024208 -79838419 + L1M4 LINE L1 4753 4826 -1320 1866 164 27 0 chr9 38024267 38024560 -79838067 - AluJb SINE Alu -11 301 1 2298 95 0 0 chr9 38024810 38025106 -79837521 + AluSx SINE Alu 1 296 -16 2202 235 68 69 chr9 38026123 38026426 -79836201 - L1M4 LINE L1 -5756 786 484 2808 3 0 3 chr9 38026426 38026725 -79835902 - AluYa5 SINE Alu -13 298 1 2202 235 68 69 chr9 38026725 38027033 -79835594 - L1M4 LINE L1 -6058 484 174 841 138 15 0 chr9 38027033 38027163 -79835464 - FLAM_C SINE Alu -1 132 1 2202 235 68 69 chr9 38027163 38027333 -79835294 - L1M4 LINE L1 -6368 174 5 1975 142 31 0 chr9 38027534 38027823 -79834804 - AluSx SINE Alu -14 298 1 523 262 52 35 chr9 38028182 38028411 -79834216 - LTR16C LTR ERVL -3 488 256 361 281 111 9 chr9 38029940 38030157 -79832470 - MIR SINE MIR -15 247 9 2174 60 32 35 chr9 38031890 38032221 -79830406 + AluY SINE Alu 1 330 0 2402 61 4 0 chr9 38032227 38032507 -79830120 + AluSx SINE Alu 1 281 -31 243 0 0 0 chr9 38032507 38032534 -79830093 + (CA)n Simple_repeat Simple_repeat 2 28 0 465 191 22 0 chr9 38032649 38032738 -79829889 - L1MA10 LINE L1 -53 6281 6191 377 234 81 24 chr9 38033136 38033260 -79829367 - MIR SINE MIR 0 262 132 2035 83 54 14 chr9 38033541 38033819 -79828808 - AluSx SINE Alu -23 289 1 1820 141 37 27 chr9 38034586 38034884 -79827743 + AluJb SINE Alu 1 301 -11 653 244 102 39 chr9 38035050 38035430 -79827197 - MLT1G LTR MaLR -12 543 115 678 184 179 11 chr9 38036100 38036279 -79826348 + MER3 DNA MER1_type 1 209 0 193 373 0 0 chr9 38036496 38036571 -79826056 + L3 LINE CR1 1103 1177 -400 205 161 0 0 chr9 38036876 38036907 -79825720 + polypyrimidine Low_complexity Low_complexity 2 32 0 276 130 0 0 chr9 38038740 38038786 -79823841 + (A)n Simple_repeat Simple_repeat 1 46 0 510 213 116 46 chr9 38039860 38040076 -79822551 - MIR SINE MIR -12 250 20 2254 114 0 3 chr9 38041943 38042250 -79820377 - AluSx SINE Alu -6 306 1 2503 72 0 3 chr9 38042802 38043106 -79819521 + AluY SINE Alu 1 303 -8 2326 90 0 35 chr9 38045737 38046047 -79816580 + AluSx SINE Alu 9 307 -5 479 231 103 51 chr9 38046125 38046320 -79816307 - MIR SINE MIR -50 212 8 1910 161 3 0 chr9 38046734 38047032 -79815595 - AluJb SINE Alu -13 299 1 1097 172 14 47 chr9 38047990 38048205 -79814422 - MER3 DNA MER1_type 0 209 2 304 263 0 0 chr9 38048275 38048355 -79814272 + MIR SINE MIR 67 146 -62 332 289 53 0 chr9 38048409 38048523 -79814104 + L1MC4 LINE L1 7793 7912 -130 200 341 111 15 chr9 38048880 38049015 -79813612 + MIR SINE MIR 29 176 -86 2365 89 0 16 chr9 38049108 38049424 -79813203 + AluY SINE Alu 1 311 0 1264 65 0 7 chr9 38049969 38050122 -79812505 - AluSq SINE Alu -12 301 150 1979 122 3 18 chr9 38050181 38050467 -79812160 - AluSx SINE Alu -30 282 1 2203 103 13 3 chr9 38050564 38050864 -79811763 + AluSx SINE Alu 1 303 -9 1712 163 11 3 chr9 38051686 38051969 -79810658 - AluJb SINE Alu -27 285 1 2305 96 3 10 chr9 38052213 38052526 -79810101 + AluSx SINE Alu 1 311 -1 2147 112 0 23 chr9 38052565 38052868 -79809759 - AluSx SINE Alu -16 296 1 2366 90 0 3 chr9 38052878 38053177 -79809450 - AluSx SINE Alu -14 298 1 236 311 78 59 chr9 38053178 38053397 -79809230 - L1ME LINE L1 -504 5617 5395 249 207 37 73 chr9 38053685 38053767 -79808860 - L1P LINE L1 -1140 5006 4928 2291 86 14 3 chr9 38054537 38054827 -79807800 + AluSx SINE Alu 3 295 -17 204 341 146 35 chr9 38055291 38055517 -79807110 - MIR SINE MIR 0 262 12 186 133 0 0 chr9 38055529 38055559 -79807068 + (A)n Simple_repeat Simple_repeat 1 30 0 248 318 102 0 chr9 38055859 38055947 -79806680 - L2 LINE L2 -3 3269 3173 225 289 200 7 chr9 38056089 38056224 -79806403 + MIR3 SINE MIR 33 193 -15 253 226 32 0 chr9 38056569 38056631 -79805996 + Charlie8 DNA MER1_type 2344 2407 -10 24 67 0 0 chr9 38057593 38057638 -79804989 + GC_rich Low_complexity Low_complexity 1 45 0 308 274 10 69 chr9 38058274 38058376 -79804251 + MIR SINE MIR 94 189 -73 24 0 0 0 chr9 38058432 38058456 -79804171 + AT_rich Low_complexity Low_complexity 1 24 0 188 265 60 60 chr9 38059682 38059765 -79802862 - L2 LINE L2 -332 2940 2858 2156 175 18 39 chr9 38060226 38060667 -79801960 - LTR3 LTR ERVK 0 432 1 2087 238 83 18 chr9 38060982 38061533 -79801094 + MLT1K LTR MaLR 2 588 0 2420 111 0 0 chr9 38061533 38061840 -79800787 + AluSx SINE Alu 1 307 -5 2534 68 3 7 chr9 38061905 38062215 -79800412 + AluSp SINE Alu 1 309 -4 2155 141 3 0 chr9 38062228 38062526 -79800101 + AluSx SINE Alu 1 299 -13 317 143 18 0 chr9 38062843 38062899 -79799728 - MLT2B1 LTR ERVL 0 520 464 1376 182 111 22 chr9 38062911 38063258 -79799369 - MLT1B LTR MaLR -9 558 4 238 218 0 18 chr9 38063261 38063316 -79799311 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 228 273 45 23 chr9 38063316 38063404 -79799223 + L1MC4 LINE L1 6614 6703 -1339 * 248 333 0 0 chr9 38063360 38063450 -79799177 - L1MC4 LINE L1 -1339 6703 6614 229 330 0 22 chr9 38063454 38063545 -79799082 - L1MC4 LINE L1 -1339 6703 6615 368 275 0 22 chr9 38063546 38063637 -79798990 - L1MC4 LINE L1 -1339 6703 6615 349 282 47 0 chr9 38063642 38063727 -79798900 - L1MC4 LINE L1 -1339 6703 6615 1004 209 73 24 chr9 38063736 38063970 -79798657 - MLT2D LTR ERVL -20 534 313 1925 128 53 0 chr9 38063970 38064251 -79798376 + AluSx SINE Alu 1 296 -16 1004 209 73 24 chr9 38064251 38064353 -79798274 - MLT2D LTR ERVL -241 313 83 2346 106 0 0 chr9 38064353 38064645 -79797982 + AluSq SINE Alu 1 292 -21 1170 92 0 7 chr9 38064645 38064828 -79797799 + AluSg/x SINE Alu 132 313 0 24 41 0 20 chr9 38064858 38064878 -79797749 + AT_rich Low_complexity Low_complexity 1 20 -28 2247 134 0 0 chr9 38064878 38065184 -79797443 + AluSx SINE Alu 1 306 -6 24 41 0 20 chr9 38065184 38065212 -79797415 + AT_rich Low_complexity Low_complexity 20 48 0 2418 77 3 13 chr9 38065227 38065539 -79797088 - AluY SINE Alu -2 309 1 5964 121 28 32 chr9 38065547 38065705 -79796922 - L1MA3 LINE L1 0 6305 6148 2492 31 42 3 chr9 38065705 38065992 -79796635 - AluY SINE Alu -12 299 2 5964 121 28 32 chr9 38065992 38066079 -79796548 - L1MA3 LINE L1 -157 6148 6062 825 123 0 36 chr9 38066079 38066217 -79796410 - FLAM_C SINE Alu 0 133 1 5964 121 28 32 chr9 38066217 38066369 -79796258 - L1MA3 LINE L1 -243 6062 5911 2340 123 0 0 chr9 38066369 38066679 -79795948 - AluSx SINE Alu -2 310 1 5964 121 28 32 chr9 38066679 38067230 -79795397 - L1MA3 LINE L1 -394 5911 5359 2232 116 3 3 chr9 38067230 38067533 -79795094 - AluSg SINE Alu -7 303 1 5964 121 28 32 chr9 38067533 38068146 -79794481 - L1MA3 LINE L1 -946 5359 4739 3468 117 2 4 chr9 38068146 38068658 -79793969 - MER9 LTR ERVK 0 511 1 1579 194 16 19 chr9 38068658 38069025 -79793602 - L1 LINE L1 -3524 4041 3676 2102 119 14 10 chr9 38069025 38069319 -79793308 - AluSx SINE Alu -17 295 1 2034 76 40 74 chr9 38069319 38069340 -79793287 - L1 LINE L1 -3956 3609 3589 1833 151 128 18 chr9 38069340 38069724 -79792903 + MSTA LTR MaLR 1 426 -2 2034 76 40 74 chr9 38069724 38069762 -79792865 - L1 LINE L1 -3976 3589 3551 2265 102 3 0 chr9 38069762 38070055 -79792572 + AluY SINE Alu 3 296 -15 2034 76 40 74 chr9 38070055 38070374 -79792253 - L1 LINE L1 -4014 3551 3243 2368 99 0 7 chr9 38070374 38070676 -79791951 - AluSx SINE Alu -12 300 1 356 76 0 61 chr9 38070687 38070753 -79791874 - AluSx SINE Alu -1 301 240 1352 111 0 0 chr9 38070753 38070924 -79791703 - AluSx SINE Alu -141 171 1 1121 112 5 0 chr9 38070924 38071111 -79791516 - L1 LINE L1 -4469 3096 2909 1105 175 0 6 chr9 38071111 38071288 -79791339 - AluSg/x SINE Alu 0 310 135 13436 124 54 46 chr9 38071289 38071753 -79790874 - L1 LINE L1 -4631 2934 2475 2103 154 0 0 chr9 38071753 38072059 -79790568 - AluSx SINE Alu -6 306 1 13436 124 54 46 chr9 38072059 38072102 -79790525 - L1 LINE L1 -5090 2475 2434 2121 111 20 7 chr9 38072102 38072399 -79790228 - AluSx SINE Alu -11 301 1 13436 124 54 46 chr9 38072399 38072595 -79790032 - L1 LINE L1 -5131 2434 2241 2254 104 6 28 chr9 38072595 38072912 -79789715 + AluSq SINE Alu 1 310 -3 13436 124 54 46 chr9 38072912 38072928 -79789699 - L1 LINE L1 -5324 2241 2227 1920 113 6 69 chr9 38072928 38073247 -79789380 + AluSp SINE Alu 1 299 -14 13436 124 54 46 chr9 38073247 38074165 -79788462 - L1 LINE L1 -5338 2227 1265 1919 148 34 0 chr9 38074165 38074463 -79788164 - AluSx SINE Alu -2 310 3 13436 124 54 46 chr9 38074463 38075247 -79787380 - L1 LINE L1 -6300 1265 489 1506 93 16 0 chr9 38075248 38075442 -79787185 + AluSg/x SINE Alu 106 302 -8 1872 147 0 61 chr9 38075829 38076155 -79786472 + AluJo SINE Alu 2 307 -5 2293 92 3 16 chr9 38076472 38076778 -79785849 - AluSx SINE Alu -10 302 1 796 183 0 0 chr9 38076784 38076915 -79785712 - FLAM_C SINE Alu -2 131 1 434 203 70 39 chr9 38079768 38079896 -79782731 - MIR3 SINE MIR -29 179 48 373 243 10 68 chr9 38080251 38080354 -79782273 + MIR SINE MIR 85 181 -81 530 107 0 0 chr9 38080354 38080438 -79782189 - Alu SINE Alu -1 309 226 4678 49 12 40 chr9 38080438 38080761 -79781866 + LTR8 LTR ERV1 1 331 -360 2352 87 10 0 chr9 38080761 38081061 -79781566 - AluSp SINE Alu -10 303 1 4678 49 12 40 chr9 38081061 38081324 -79781303 + LTR8 LTR ERV1 331 570 -121 2280 90 0 40 chr9 38081324 38081647 -79780980 + AluSx SINE Alu 1 310 -2 4678 49 12 40 chr9 38081647 38081714 -79780913 + LTR8 LTR ERV1 570 637 -54 1441 90 0 0 chr9 38081883 38082061 -79780566 - AluSq SINE Alu -135 178 1 2366 81 7 0 chr9 38083163 38083461 -79779166 - AluSg SINE Alu -10 300 1 183 245 0 96 chr9 38084000 38084094 -79778533 - MIR3 SINE MIR -33 175 91 231 36 0 0 chr9 38084358 38084386 -79778241 + (TG)n Simple_repeat Simple_repeat 1 28 0 2040 118 49 7 chr9 38086803 38087090 -79775537 - AluSx SINE Alu -13 299 1 1466 284 130 31 chr9 38087270 38087927 -79774700 + L2 LINE L2 1920 2778 -535 2121 122 3 3 chr9 38087927 38088222 -79774405 - AluSx SINE Alu -4 308 14 1466 284 130 31 chr9 38088222 38088425 -79774202 + L2 LINE L2 2778 2960 -353 239 208 42 0 chr9 38088425 38088473 -79774154 + polypyrimidine Low_complexity Low_complexity 2 51 0 736 224 22 22 chr9 38088473 38088656 -79773971 - FRAM SINE Alu -1 175 1 1521 91 5 5 chr9 38088672 38088871 -79773756 + AluSp SINE Alu 1 199 -114 337 176 0 0 chr9 38088871 38088922 -79773705 - Alu SINE Alu -251 51 1 462 318 63 63 chr9 38088960 38089009 -79773618 + L2 LINE L2 3012 3060 -253 2113 139 10 0 chr9 38089009 38089310 -79773317 - AluSx SINE Alu -8 304 1 462 318 63 63 chr9 38089310 38089562 -79773065 + L2 LINE L2 3059 3313 0 2307 112 0 0 chr9 38089917 38090212 -79772415 - AluSx SINE Alu -17 295 1 476 296 0 0 chr9 38090383 38090498 -79772129 + L2 LINE L2 3198 3312 -1 1694 159 32 174 chr9 38090578 38090882 -79771745 + L1MB3 LINE L1 5444 5789 -385 2385 114 0 0 chr9 38090882 38091189 -79771438 + AluSx SINE Alu 1 307 -5 1694 159 32 174 chr9 38091189 38091348 -79771279 + L1MB3 LINE L1 5789 5969 -205 2374 119 0 0 chr9 38091348 38091658 -79770969 + AluSx SINE Alu 1 310 -2 2089 109 0 44 chr9 38091667 38091998 -79770629 + AluSg SINE Alu 1 318 0 1694 159 32 174 chr9 38091998 38092144 -79770483 + L1MB3 LINE L1 5812 5977 -197 1843 124 7 7 chr9 38092144 38092418 -79770209 - MER1B DNA MER1_type -65 274 1 849 163 6 6 chr9 38092418 38092578 -79770049 + L1MB3 LINE L1 6015 6174 -9 1811 175 10 16 chr9 38092578 38092755 -79769872 - AluJo SINE Alu 0 312 136 2387 115 0 0 chr9 38092755 38093067 -79769560 - AluSx SINE Alu 0 312 1 1811 175 10 16 chr9 38093067 38093203 -79769424 - AluJo SINE Alu -176 136 1 2308 93 10 0 chr9 38093392 38093682 -79768945 - AluSx SINE Alu -19 293 1 225 326 11 0 chr9 38094454 38094543 -79768084 + L1MC/D LINE L1 5768 5857 -1951 692 135 9 0 chr9 38094773 38094884 -79767743 + AluSg/x SINE Alu 174 285 -27 209 0 98 0 chr9 38094898 38094939 -79767688 + (TA)n Simple_repeat Simple_repeat 2 46 0 2244 117 7 10 chr9 38095067 38095376 -79767251 - AluSx SINE Alu -4 308 1 228 244 0 16 chr9 38095778 38095840 -79766787 + MIR SINE MIR 93 152 -63 1872 125 25 66 chr9 38095848 38096168 -79766459 - AluSq SINE Alu -6 307 1 2591 84 0 0 chr9 38096219 38096527 -79766100 - AluSq SINE Alu -5 308 1 230 287 23 23 chr9 38097398 38097485 -79765142 - MIR SINE MIR -95 113 27 380 275 84 51 chr9 38098338 38098516 -79764111 + MIR3 SINE MIR 20 203 -5 314 214 131 0 chr9 38098755 38098839 -79763788 - MER5A DNA MER1_type -80 109 15 * 638 241 12 31 chr9 38098833 38098934 -79763693 + MER5B DNA MER1_type 20 118 -60 2391 98 0 6 chr9 38098934 38099249 -79763378 - AluSp SINE Alu 0 313 1 638 241 12 31 chr9 38099249 38099309 -79763318 + MER5B DNA MER1_type 118 178 0 307 261 56 21 chr9 38099309 38099433 -79763194 - MIR3 SINE MIR -40 168 40 300 231 14 91 chr9 38100045 38100188 -79762439 + L2 LINE L2 3136 3267 -5 2297 115 0 0 chr9 38100734 38101029 -79761598 - AluSx SINE Alu -17 295 1 404 241 92 7 chr9 38101429 38101570 -79761057 - L2 LINE L2 -500 2814 2662 827 206 58 26 chr9 38101814 38102003 -79760624 + MLT2B3 LTR ERVL 1 195 -359 2747 207 76 2 chr9 38102029 38102609 -79760018 + MSTD-int LTR MaLR 1113 1735 0 986 192 108 45 chr9 38102609 38102937 -79759690 + MSTD LTR MaLR 1 394 -2 485 115 58 13 chr9 38103176 38103332 -79759295 + (TCCA)n Simple_repeat Simple_repeat 1 163 0 194 91 30 76 chr9 38103387 38103453 -79759174 + (TCCA)n Simple_repeat Simple_repeat 4 66 0 263 339 68 0 chr9 38103472 38103590 -79759037 - L2 LINE L2 -24 3248 3123 1037 155 6 0 chr9 38104535 38104716 -79757911 + L1MB2 LINE L1 5990 6171 0 700 292 214 3 chr9 38104967 38105309 -79757318 + L3 LINE CR1 1157 1570 -7 299 238 16 0 chr9 38106569 38106632 -79755995 - MIR SINE MIR -68 140 77 1226 125 0 0 chr9 38107157 38107341 -79755286 + AluJb SINE Alu 118 301 -11 759 245 28 47 chr9 38107707 38107919 -79754708 + MIR SINE MIR 55 262 0 186 301 41 70 chr9 38108127 38108261 -79754366 - MIR SINE MIR -60 148 24 351 249 167 35 chr9 38108847 38109051 -79753576 + MIR SINE MIR 5 234 -28 2112 96 0 0 chr9 38110490 38110772 -79751855 + AluSg SINE Alu 20 301 -9 288 285 109 7 chr9 38110939 38111076 -79751551 - MIR3 SINE MIR -27 181 31 22 35 0 0 chr9 38112051 38112080 -79750547 + GC_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr9 38112306 38112343 -79750284 + GC_rich Low_complexity Low_complexity 1 37 0 220 339 23 0 chr9 38112855 38112985 -79749642 + L2 LINE L2 2834 2966 -306 797 186 51 0 chr9 38113402 38113558 -79749069 + MER7A DNA MER2_type 3 164 -182 802 94 14 58 chr9 38113602 38113740 -79748887 + FLAM_C SINE Alu 1 132 -11 297 0 0 0 chr9 38114246 38114279 -79748348 + (TG)n Simple_repeat Simple_repeat 2 34 0 1883 105 36 4 chr9 38114279 38114555 -79748072 - AluSx SINE Alu -27 285 1 382 219 62 34 chr9 38114563 38114709 -79747918 - L1MEc LINE L1 -4000 2396 2247 1959 113 0 35 chr9 38114709 38115019 -79747608 - AluSx SINE Alu -13 299 1 278 276 56 51 chr9 38115024 38115220 -79747407 + L1M4 LINE L1 2683 2879 -3267 1677 166 3 43 chr9 38115283 38115608 -79747019 + AluJo SINE Alu 1 312 0 340 331 38 51 chr9 38115615 38115772 -79746855 + MIR SINE MIR 12 166 -96 761 176 84 0 chr9 38115777 38115919 -79746708 - FRAM SINE Alu -12 154 1 2119 113 0 3 chr9 38116131 38116441 -79746186 + AluSx SINE Alu 2 310 -2 2200 107 0 0 chr9 38116996 38117294 -79745333 - AluSg SINE Alu -12 298 1 1672 176 7 10 chr9 38117472 38117773 -79744854 + AluJo SINE Alu 1 300 -12 1929 156 0 0 chr9 38117786 38118087 -79744540 - AluSx SINE Alu -11 301 1 2197 100 0 29 chr9 38118264 38118575 -79744052 - AluSx SINE Alu -10 302 1 23 33 0 0 chr9 38118587 38118617 -79744010 + AT_rich Low_complexity Low_complexity 1 30 0 358 298 128 48 chr9 38118889 38119178 -79743449 + L1M4 LINE L1 3120 3431 -2715 1386 106 4 31 chr9 38119189 38119446 -79743181 + AluSq SINE Alu 84 313 0 1213 178 6 132 chr9 38119449 38119791 -79742836 + AluJb SINE Alu 2 300 -2 455 301 89 42 chr9 38119794 38120319 -79742308 + L1M4 LINE L1 3856 4405 -1741 447 231 59 35 chr9 38120935 38121104 -79741523 + LTR33 LTR ERVL 1 173 -348 785 192 34 23 chr9 38121123 38121300 -79741327 + LTR33 LTR ERVL 343 521 0 1857 137 29 10 chr9 38121314 38121620 -79741007 - AluJb SINE Alu 0 312 1 221 299 80 43 chr9 38123260 38123447 -79739180 + L2 LINE L2 2889 3082 -190 228 156 22 0 chr9 38123521 38123567 -79739060 - Alu SINE Alu -12 154 114 560 257 68 33 chr9 38123637 38123967 -79738660 + MLT1I LTR MaLR 1 365 -44 1042 135 0 56 chr9 38124267 38124445 -79738182 - AluSc SINE Alu -13 296 129 26 0 0 0 chr9 38124543 38124569 -79738058 + AT_rich Low_complexity Low_complexity 1 26 0 863 159 0 0 chr9 38126390 38126522 -79736105 + FLAM_C SINE Alu 1 132 -1 398 308 77 7 chr9 38126900 38127043 -79735584 + MIR3 SINE MIR 40 192 -16 500 305 63 45 chr9 38128047 38128270 -79734357 + MIR SINE MIR 9 235 -27 437 239 87 18 chr9 38128576 38128707 -79733920 + MIR SINE MIR 6 153 -55 2459 47 0 3 chr9 38128745 38129041 -79733586 - AluY SINE Alu -16 295 1 27 0 0 0 chr9 38129046 38129073 -79733554 + AT_rich Low_complexity Low_complexity 1 27 0 618 296 52 26 chr9 38129160 38129393 -79733234 + L2 LINE L2 3075 3313 0 2271 85 3 0 chr9 38130999 38131293 -79731334 - AluSg SINE Alu -15 295 1 2301 73 7 0 chr9 38132567 38132868 -79729759 + AluSp SINE Alu 1 303 -10 21 36 0 0 chr9 38133170 38133198 -79729429 + AT_rich Low_complexity Low_complexity 1 28 0 342 293 113 0 chr9 38133532 38133638 -79728989 + L2 LINE L2 3192 3309 -4 2096 109 0 0 chr9 38133651 38133961 -79728666 - AluSx SINE Alu 0 310 1 1721 132 30 0 chr9 38134125 38134415 -79728212 - AluSx SINE Alu 0 306 9 638 233 117 49 chr9 38134467 38134690 -79727937 - L1MC/D LINE L1 -2183 5625 5388 1138 280 78 24 chr9 38134690 38135115 -79727512 + MLT1J2 LTR MaLR 1 448 -2 339 198 81 0 chr9 38135120 38135206 -79727421 - L1MC/D LINE L1 -2419 5389 5297 326 302 35 59 chr9 38135406 38135575 -79727052 - L1ME4a LINE L1 0 6121 5957 321 303 109 72 chr9 38136192 38136496 -79726131 + L2 LINE L2 2953 3267 -5 1437 69 0 0 chr9 38136849 38137038 -79725589 - AluY SINE Alu -8 303 115 2147 100 3 3 chr9 38137300 38137601 -79725026 + AluSp SINE Alu 1 301 -12 454 283 18 0 chr9 38138677 38138790 -79723837 - MIR3 SINE MIR 0 208 94 1790 163 3 0 chr9 38139138 38139432 -79723195 - AluJb SINE Alu -17 295 1 544 275 93 51 chr9 38140397 38140633 -79721994 + MIR SINE MIR 17 262 0 2172 89 0 54 chr9 38141370 38141686 -79720941 - AluSg SINE Alu -11 299 1 2387 69 0 7 chr9 38141867 38142171 -79720456 - AluY SINE Alu -9 302 1 21 0 0 0 chr9 38142180 38142201 -79720426 + AT_rich Low_complexity Low_complexity 1 21 0 24 35 0 53 chr9 38142430 38142456 -79720171 + AT_rich Low_complexity Low_complexity 1 27 -27 2120 114 0 10 chr9 38142456 38142753 -79719874 + AluSq SINE Alu 1 294 -19 24 35 0 53 chr9 38142753 38142783 -79719844 + AT_rich Low_complexity Low_complexity 27 54 0 2019 78 11 4 chr9 38142884 38143165 -79719462 - AluY SINE Alu -28 283 1 251 250 60 17 chr9 38143598 38143714 -79718913 - L1ME4a LINE L1 -1 6120 6000 561 209 58 22 chr9 38144141 38144280 -79718347 - L2 LINE L2 0 3313 3170 2098 110 3 0 chr9 38144288 38144579 -79718048 + AluSx SINE Alu 1 292 -20 1147 115 52 0 chr9 38144589 38144763 -79717864 + AluSg/x SINE Alu 128 310 0 225 197 0 45 chr9 38144781 38144847 -79717780 - L1MC4 LINE L1 -1339 6703 6641 365 318 47 0 chr9 38145216 38145323 -79717304 - MIR3 SINE MIR -15 193 82 269 219 35 88 chr9 38145477 38145591 -79717036 + MLT1J LTR MaLR 45 152 -359 275 196 54 0 chr9 38145704 38145760 -79716867 + MLT1J LTR MaLR 312 370 -141 2139 101 0 3 chr9 38146125 38146423 -79716204 - AluY SINE Alu -14 297 1 2117 88 48 0 chr9 38147846 38148141 -79714486 + AluSc SINE Alu 1 309 0 674 249 21 51 chr9 38149075 38149312 -79713315 - L1ME2 LINE L1 -1 6163 5934 1185 152 18 36 chr9 38149312 38149536 -79713091 + AluJo SINE Alu 1 220 -92 1327 166 49 0 chr9 38149560 38149825 -79712802 - Charlie1b DNA MER1_type -105 418 141 1861 151 0 0 chr9 38149825 38150151 -79712476 - AluJb SINE Alu 0 328 3 1282 239 203 28 chr9 38150153 38150734 -79711893 - L1ME3 LINE L1 -113 6049 5367 5427 125 22 58 chr9 38150743 38151127 -79711500 - L1MA8 LINE L1 -3 6288 5905 2382 231 26 80 chr9 38151127 38151744 -79710883 - L1PB3 LINE L1 -217 5937 5288 2244 103 0 13 chr9 38151744 38152055 -79710572 - AluSx SINE Alu -5 307 1 2382 231 26 80 chr9 38152055 38152152 -79710475 - L1PB3 LINE L1 -866 5288 5187 195 42 0 0 chr9 38152152 38152176 -79710451 + (TG)n Simple_repeat Simple_repeat 1 24 0 2382 231 26 80 chr9 38152176 38152526 -79710101 - L1PB3 LINE L1 -967 5187 4820 2147 85 3 3 chr9 38152526 38152842 -79709785 - AluSq SINE Alu 0 316 1 1651 153 14 20 chr9 38152850 38153009 -79709618 - AluJb SINE Alu -20 292 134 2239 74 27 17 chr9 38153009 38153308 -79709319 - AluSq SINE Alu -11 302 1 1651 153 14 20 chr9 38153308 38153442 -79709185 - AluJb SINE Alu -178 134 1 2382 231 26 80 chr9 38153442 38153505 -79709122 - L1PB3 LINE L1 -1246 4908 4843 1093 276 94 0 chr9 38153496 38153891 -79708736 - L1ME LINE L1 -2369 3711 3280 * 638 143 20 0 chr9 38153893 38153991 -79708636 - AluSg/x SINE Alu -20 289 190 2626 256 159 36 chr9 38153991 38155975 -79706652 - L1ME LINE L1 -3233 2847 440 717 324 34 42 chr9 38156100 38156412 -79706215 - L1ME LINE L1 -5617 453 145 2150 92 0 64 chr9 38156412 38156726 -79705901 + AluSx SINE Alu 8 301 -11 717 324 34 42 chr9 38156726 38156861 -79705766 - L1ME LINE L1 -5925 145 10 256 358 37 0 chr9 38157200 38157334 -79705293 + L2 LINE L2 2069 2207 -1107 27 92 0 0 chr9 38158577 38158653 -79703974 + AT_rich Low_complexity Low_complexity 1 76 0 556 248 0 8 chr9 38158719 38158836 -79703791 - L2 LINE L2 -1 3312 3197 1756 160 51 0 chr9 38158915 38159092 -79703535 - AluSx SINE Alu -4 308 109 333 0 0 0 chr9 38159092 38159129 -79703498 + (TG)n Simple_repeat Simple_repeat 2 38 0 1756 160 51 0 chr9 38159129 38159244 -79703383 - AluSx SINE Alu -203 109 1 2478 89 29 0 chr9 38159261 38159611 -79703016 - MER46B DNA MER2_type -1 235 1 2143 102 3 14 chr9 38160067 38160360 -79702267 - AluSx SINE Alu -22 290 1 205 259 0 56 chr9 38160951 38161005 -79701622 + L2 LINE L2 3258 3308 -5 3805 59 0 0 chr9 38161443 38161921 -79700706 - L1PA7 LINE L1 0 6154 5677 1720 49 364 169 chr9 38162323 38162809 -79699818 + LTR12 LTR ERV1 1 581 -133 1566 172 33 36 chr9 38163349 38163652 -79698975 - AluJo SINE Alu -5 307 6 1721 191 0 0 chr9 38164035 38164318 -79698309 - AluJo SINE Alu -23 289 7 398 114 14 0 chr9 38164335 38164405 -79698222 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 2060 115 4 0 chr9 38164405 38164684 -79697943 - AluSx SINE Alu -32 280 1 1750 171 20 3 chr9 38164684 38164983 -79697644 - AluSx SINE Alu -8 304 1 537 293 18 66 chr9 38165010 38165345 -79697282 - L1ME LINE L1 -302 5819 5501 454 250 83 0 chr9 38165988 38166120 -79696507 + MER20 DNA MER1_type 74 216 -3 209 116 0 23 chr9 38166166 38166209 -79696418 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 1484 189 89 0 chr9 38166637 38166907 -79695720 + AluJb SINE Alu 1 294 -18 330 26 0 0 chr9 38166908 38166947 -79695680 + (GA)n Simple_repeat Simple_repeat 1 39 0 2297 94 3 0 chr9 38167247 38167545 -79695082 - AluSx SINE Alu -13 299 1 199 293 76 86 chr9 38167851 38168049 -79694578 + L2 LINE L2 2895 3090 -182 287 325 150 25 chr9 38168911 38169071 -79693556 - MER5A DNA MER1_type -5 184 5 277 336 0 19 chr9 38169073 38169180 -79693447 - MIR SINE MIR -64 144 40 429 208 10 0 chr9 38169511 38169607 -79693020 - L1ME3A LINE L1 -312 5858 5762 2252 85 3 0 chr9 38169902 38170236 -79692391 + AluSp SINE Alu 1 335 0 1279 173 0 9 chr9 38170462 38170682 -79691945 + MER20 DNA MER1_type 2 219 0 302 243 14 14 chr9 38170820 38170890 -79691737 - MIR3 SINE MIR -41 167 98 609 183 0 10 chr9 38170914 38171018 -79691609 + MER58A DNA MER1_type 1 103 -4 23 0 0 0 chr9 38171018 38171041 -79691586 + AT_rich Low_complexity Low_complexity 1 23 0 284 152 0 0 chr9 38171069 38171115 -79691512 - FLAM_A SINE Alu -8 125 80 497 221 48 62 chr9 38171152 38171297 -79691330 + MER58A DNA MER1_type 82 224 0 275 274 0 41 chr9 38172442 38172515 -79690112 + MER63 DNA MER1_type 992 1061 -1 879 262 113 43 chr9 38173835 38174285 -79688342 + MLT1H LTR MaLR 1 533 -16 325 316 146 59 chr9 38174523 38174776 -79687851 + L2 LINE L2 2995 3269 -3 307 278 0 14 chr9 38175076 38175148 -79687479 + MER63 DNA MER1_type 677 747 -89 * 308 183 0 73 chr9 38175129 38175211 -79687416 + MER63 DNA MER1_type 970 1045 -16 384 355 56 28 chr9 38175434 38175758 -79686869 - L2 LINE L2 -558 2756 2424 486 46 0 0 chr9 38175818 38175883 -79686744 + (TG)n Simple_repeat Simple_repeat 2 66 0 191 344 73 10 chr9 38176029 38176125 -79686502 - L2 LINE L2 -1037 2277 2176 417 320 147 0 chr9 38178351 38178501 -79684126 - L3 LINE CR1 -3 1574 1403 21 0 0 0 chr9 38178869 38178890 -79683737 + AT_rich Low_complexity Low_complexity 1 21 0 497 276 102 58 chr9 38179051 38179614 -79683013 - L1MEc LINE L1 -4729 1581 1044 1734 94 5 5 chr9 38179614 38179838 -79682789 - AluSx SINE Alu -88 224 1 497 276 102 58 chr9 38179838 38180602 -79682025 - L1MEc LINE L1 -5266 1044 102 24 53 0 0 chr9 38183528 38183566 -79679061 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr9 38183991 38184018 -79678609 + (T)n Simple_repeat Simple_repeat 1 27 0 344 282 81 24 chr9 38184161 38184285 -79678342 - MIR SINE MIR -38 224 94 2284 100 0 0 chr9 38186102 38186392 -79676235 - AluSx SINE Alu -20 292 3 2012 136 7 0 chr9 38186469 38186763 -79675864 + AluSx SINE Alu 1 296 -16 2209 124 3 0 chr9 38186788 38187086 -79675541 + AluSq SINE Alu 3 301 -12 245 239 0 0 chr9 38187687 38187733 -79674894 - L2 LINE L2 -17 3255 3210 405 0 0 0 chr9 38187808 38187853 -79674774 + (TG)n Simple_repeat Simple_repeat 2 46 0 310 288 234 46 chr9 38188347 38188778 -79673849 - L2 LINE L2 -950 2364 1853 801 164 8 0 chr9 38188830 38188958 -79673669 + FLAM_C SINE Alu 1 129 -4 2286 101 3 0 chr9 38189775 38190072 -79672555 - AluSx SINE Alu -14 298 1 7242 11 1 0 chr9 38190532 38191402 -79671225 - L1PA3 LINE L1 0 6155 5333 1737 178 0 10 chr9 38191402 38191711 -79670916 - AluJb SINE Alu -6 306 1 488 140 47 19 chr9 38192333 38192440 -79670187 + L1MC5 LINE L1 7130 7239 -722 951 182 53 5 chr9 38192490 38192677 -79669950 - MER3 DNA MER1_type -13 196 1 1408 225 113 33 chr9 38192677 38193228 -79669399 + L1MC5 LINE L1 7330 7924 -37 297 177 21 52 chr9 38193232 38193328 -79669299 + GA-rich Low_complexity Low_complexity 2 94 0 782 296 12 24 chr9 38193558 38193805 -79668822 + MIR SINE MIR 5 248 -14 193 286 111 0 chr9 38193844 38193907 -79668720 + MIR3 SINE MIR 136 205 -3 28 0 0 0 chr9 38194527 38194555 -79668072 + AT_rich Low_complexity Low_complexity 1 28 0 288 222 37 102 chr9 38194593 38194701 -79667926 - L2 LINE L2 -10 3303 3203 22 0 0 0 chr9 38194728 38194750 -79667877 + AT_rich Low_complexity Low_complexity 1 22 0 2221 232 64 31 chr9 38196044 38196713 -79665914 - L1MC4 LINE L1 -18 8024 7334 835 150 0 8 chr9 38196762 38196895 -79665732 - FLAM_C SINE Alu 0 133 2 409 274 195 0 chr9 38197100 38197213 -79665414 - L2 LINE L2 -5 3267 3133 315 307 18 0 chr9 38197217 38197331 -79665296 - MIR SINE MIR 0 262 147 446 309 198 26 chr9 38197359 38197980 -79664647 - L2 LINE L2 -946 2368 1641 3217 253 162 21 chr9 38198131 38198204 -79664423 - L2 LINE L2 -51 3262 3201 231 114 0 0 chr9 38198204 38198239 -79664388 + (TA)n Simple_repeat Simple_repeat 2 36 0 3217 253 162 21 chr9 38198239 38199486 -79663141 - L2 LINE L2 -112 3201 1769 1874 242 62 74 chr9 38199526 38199633 -79662994 + MER21B LTR ERV1 24 131 -732 1137 121 167 5 chr9 38199633 38199831 -79662796 - MER30 DNA MER1_type 0 230 1 1874 242 62 74 chr9 38199831 38200443 -79662184 + MER21B LTR ERV1 131 735 -128 241 371 34 0 chr9 38200503 38200592 -79662035 - L2 LINE L2 -44 3228 3137 246 301 83 38 chr9 38200655 38200788 -79661839 - L2 LINE L2 -1903 1411 1273 312 27 0 0 chr9 38201083 38201120 -79661507 + (TA)n Simple_repeat Simple_repeat 1 37 0 1832 128 49 21 chr9 38201632 38201920 -79660707 - AluSx SINE Alu -16 296 1 313 257 97 9 chr9 38202437 38202550 -79660077 - L1ME4a LINE L1 -30 6091 5969 24 0 0 0 chr9 38203265 38203289 -79659338 + AT_rich Low_complexity Low_complexity 1 24 0 192 125 0 0 chr9 38203703 38203735 -79658892 + (CATATA)n Simple_repeat Simple_repeat 3 34 0 35 71 0 0 chr9 38203829 38203899 -79658728 + AT_rich Low_complexity Low_complexity 1 70 0 252 211 63 106 chr9 38204057 38204199 -79658428 - L1MC4 LINE L1 -43 7999 7864 182 315 54 45 chr9 38204266 38204377 -79658250 + L2 LINE L2 2675 2786 -528 5304 137 26 17 chr9 38204736 38205905 -79656722 + L1P5 LINE L1 4119 5327 -824 2377 58 3 49 chr9 38205905 38206231 -79656396 + AluY SINE Alu 1 311 0 5304 137 26 17 chr9 38206231 38206700 -79655927 + L1P5 LINE L1 5327 5790 -361 3023 81 50 20 chr9 38206694 38206779 -79655848 + L1PB1 LINE L1 5695 5776 -375 378 0 0 0 chr9 38206779 38206821 -79655806 + (CA)n Simple_repeat Simple_repeat 2 43 0 3023 81 50 20 chr9 38206821 38207177 -79655450 + L1PB1 LINE L1 5776 6149 -2 230 266 38 13 chr9 38208147 38208226 -79654401 + L2 LINE L2 3229 3309 -4 814 260 158 46 chr9 38208346 38209168 -79653459 + L2 LINE L2 2369 3312 -1 21 0 0 0 chr9 38209203 38209224 -79653403 + AT_rich Low_complexity Low_complexity 1 21 0 188 260 0 20 chr9 38210105 38210155 -79652472 - MIR3 SINE MIR -11 197 149 1155 128 6 0 chr9 38210224 38210403 -79652224 - L1MB7 LINE L1 -9 6175 5996 301 266 28 28 chr9 38210406 38210417 -79652210 + MER103 DNA DNA 48 58 -108 191 61 30 0 chr9 38210417 38210450 -79652177 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 301 266 28 28 chr9 38210450 38210547 -79652080 + MER103 DNA DNA 57 156 -10 199 262 148 57 chr9 38210567 38210689 -79651938 - MIR SINE MIR -42 220 88 249 286 13 26 chr9 38210781 38210858 -79651769 - MIR3 SINE MIR -52 156 81 1629 136 73 7 chr9 38210942 38211215 -79651412 - AluJb SINE Alu -21 291 1 21 0 0 0 chr9 38211223 38211244 -79651383 + AT_rich Low_complexity Low_complexity 1 21 0 192 125 0 0 chr9 38212294 38212326 -79650301 + (CCG)n Simple_repeat Simple_repeat 3 34 0 269 244 87 9 chr9 38212521 38212636 -79649991 - MIR3 SINE MIR -9 199 76 27 0 0 0 chr9 38212857 38212884 -79649743 + AT_rich Low_complexity Low_complexity 1 27 0 1770 139 0 7 chr9 38212892 38213165 -79649462 - AluJb SINE Alu -41 271 1 241 218 105 24 chr9 38213493 38213617 -79649010 - L1MC5 LINE L1 -309 7652 7519 1024 248 71 24 chr9 38213717 38214011 -79648616 - MER93a LTR ERV1 -3 399 92 809 146 0 29 chr9 38214197 38214334 -79648293 + FLAM_C SINE Alu 1 133 0 1567 94 0 0 chr9 38214463 38214654 -79647973 + AluSg SINE Alu 1 191 -119 1648 152 27 0 chr9 38214663 38214926 -79647701 - L1MC1 LINE L1 -5 6328 6059 245 211 0 0 chr9 38214926 38214978 -79647649 + Charlie5 DNA MER1_type 2542 2593 -19 1619 186 0 17 chr9 38215008 38215303 -79647324 - AluJo SINE Alu -22 290 1 323 327 88 26 chr9 38215476 38215782 -79646845 + L2 LINE L2 2829 3153 -160 24 0 0 0 chr9 38215790 38215814 -79646813 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr9 38215916 38215941 -79646686 + (CA)n Simple_repeat Simple_repeat 2 26 0 2115 130 0 13 chr9 38215944 38216245 -79646382 - AluJb SINE Alu -15 297 1 21 82 0 0 chr9 38217861 38217910 -79644717 + AT_rich Low_complexity Low_complexity 1 49 0 3765 119 36 59 chr9 38218348 38219038 -79643589 + L1MC1 LINE L1 5660 6333 0 237 281 0 16 chr9 38220325 38220389 -79642238 + MER5A DNA MER1_type 79 141 -48 2091 134 0 49 chr9 38220396 38220724 -79641903 - AluSx SINE Alu 0 312 1 1345 174 29 54 chr9 38220862 38220979 -79641648 + AluJo SINE Alu 5 123 -189 270 0 0 0 chr9 38220979 38221009 -79641618 + (TA)n Simple_repeat Simple_repeat 2 31 0 1345 174 29 54 chr9 38221009 38221024 -79641603 + AluJo SINE Alu 123 137 -175 770 0 11 0 chr9 38221024 38221114 -79641513 + (TCTA)n Simple_repeat Simple_repeat 3 93 0 1345 174 29 54 chr9 38221114 38221296 -79641331 + AluJo SINE Alu 137 312 0 2201 197 32 43 chr9 38221818 38221862 -79640765 - L1ME1 LINE L1 -5 6161 6118 2227 72 21 3 chr9 38221862 38222152 -79640475 + AluY SINE Alu 1 295 -16 2201 197 32 43 chr9 38222152 38222636 -79639991 - L1ME1 LINE L1 -48 6118 5639 1176 249 58 23 chr9 38222639 38223037 -79639590 - MER74B LTR ERVL 0 622 211 318 170 0 0 chr9 38223072 38223125 -79639502 - MER74B LTR ERVL -569 53 1 1860 209 35 29 chr9 38223126 38223855 -79638772 - L1ME1 LINE L1 -523 5643 4911 1826 159 10 14 chr9 38224597 38224887 -79637740 - AluJb SINE Alu -23 289 1 463 250 47 35 chr9 38225118 38225290 -79637337 + L1MEd LINE L1 59 232 -5887 436 257 0 20 chr9 38225418 38225519 -79637108 + MER5A DNA MER1_type 4 102 -87 328 282 0 27 chr9 38225854 38225964 -79636663 - MIR SINE MIR -58 150 44 2134 125 72 83 chr9 38226133 38226566 -79636061 + MSTA LTR MaLR 1 428 0 210 297 45 27 chr9 38227021 38227132 -79635495 + MIR3 SINE MIR 88 200 -8 253 341 78 8 chr9 38228077 38228206 -79634421 - L2 LINE L2 -10 3262 3125 950 191 0 34 chr9 38228291 38228469 -79634158 + AluJ SINE Alu 1 172 -140 317 175 0 198 chr9 38228484 38228701 -79633926 + LTR38B LTR ERV1 10 183 -427 2318 85 13 3 chr9 38229028 38229333 -79633294 + AluY SINE Alu 1 308 -3 225 0 0 0 chr9 38229333 38229358 -79633269 + (CCA)n Simple_repeat Simple_repeat 1 25 0 790 166 0 14 chr9 38229523 38229662 -79632965 + AluJ SINE Alu 167 303 -9 203 276 61 20 chr9 38230358 38230456 -79632171 - L3 LINE CR1 -23 1554 1453 2284 128 12 0 chr9 38230456 38230791 -79631836 - MER47A DNA MER2_type 0 366 28 1592 151 34 34 chr9 38230936 38231227 -79631400 - AluJo SINE Alu -20 292 2 2181 123 0 3 chr9 38231237 38231539 -79631088 - AluSx SINE Alu -11 301 1 1223 346 67 43 chr9 38232078 38233038 -79629589 + ERVL LTR ERVL 1231 2213 -3551 1339 183 119 58 chr9 38233412 38233756 -79628871 + MLT1A1 LTR MaLR 1 365 0 2379 118 120 5 chr9 38234424 38234807 -79627820 - MSTA LTR MaLR 0 428 2 251 300 22 0 chr9 38236239 38236329 -79626298 + L1ME LINE L1 4 95 -5975 2898 157 6 2 chr9 38237197 38237680 -79624947 + MER31A LTR ERV1 1 485 0 324 222 0 0 chr9 38237953 38238016 -79624611 - L2 LINE L2 -10 3303 3241 189 0 0 0 chr9 38238059 38238080 -79624547 + (CAT)n Simple_repeat Simple_repeat 3 23 0 518 289 148 19 chr9 38238109 38238379 -79624248 - L3 LINE CR1 -27 1550 1246 1255 204 19 0 chr9 38238992 38239257 -79623370 + L1MA4 LINE L1 6022 6291 -9 23 0 0 0 chr9 38239296 38239319 -79623308 + AT_rich Low_complexity Low_complexity 1 23 0 183 271 0 0 chr9 38239741 38239800 -79622827 + CT-rich Low_complexity Low_complexity 4 62 0 231 341 94 13 chr9 38239857 38240156 -79622471 - L3 LINE CR1 -652 925 603 206 314 212 7 chr9 38240151 38240288 -79622339 - L2 LINE L2 0 3272 3108 * 2800 99 90 11 chr9 38240345 38240557 -79622070 - Tigger2 DNA MER2_type 0 2718 2524 1692 169 7 10 chr9 38240557 38240832 -79621795 + AluSx SINE Alu 2 276 -36 360 0 0 0 chr9 38240832 38240872 -79621755 + (TC)n Simple_repeat Simple_repeat 1 40 0 216 0 0 0 chr9 38240871 38240895 -79621732 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 1692 169 7 10 chr9 38240872 38240914 -79621713 + AluSx SINE Alu 276 295 -17 2800 99 90 11 chr9 38240914 38241145 -79621482 - Tigger2 DNA MER2_type -194 2524 2240 263 353 42 32 chr9 38242445 38242635 -79619992 + L3 LINE CR1 1259 1450 -127 1539 226 95 15 chr9 38242707 38243170 -79619457 - MLT1E LTR MaLR -2 591 1 322 354 43 6 chr9 38244413 38244574 -79618053 + L3 LINE CR1 1367 1533 -44 360 0 0 0 chr9 38247395 38247435 -79615192 + (TG)n Simple_repeat Simple_repeat 2 41 0 2741 101 36 10 chr9 38247446 38247860 -79614767 - L1MA3 LINE L1 0 6305 5881 719 170 91 140 chr9 38247860 38248166 -79614461 - L1MC5 LINE L1 -135 7826 7555 2866 80 0 29 chr9 38248166 38248552 -79614075 + THE1C LTR MaLR 1 375 0 719 170 91 140 chr9 38248552 38248775 -79613852 - L1MC5 LINE L1 -406 7555 7323 874 225 52 19 chr9 38248805 38249101 -79613526 - L1MC5 LINE L1 -1090 6871 6625 287 123 82 0 chr9 38249864 38249986 -79612641 + (TA)n Simple_repeat Simple_repeat 2 133 0 340 80 80 0 chr9 38250094 38250194 -79612433 + (TA)n Simple_repeat Simple_repeat 1 108 0 21 0 0 0 chr9 38250270 38250291 -79612336 + AT_rich Low_complexity Low_complexity 1 21 0 366 310 29 23 chr9 38250345 38250516 -79612111 - L2 LINE L2 0 3313 3142 1108 259 112 40 chr9 38250548 38250758 -79611869 + HAL1 LINE L1 23 217 -2290 1791 190 87 11 chr9 38250758 38251126 -79611501 - MSTD LTR MaLR 0 396 1 1108 259 112 40 chr9 38251126 38251389 -79611238 + HAL1 LINE L1 217 530 -1977 1020 220 111 85 chr9 38251389 38251518 -79611109 + HAL1 LINE L1 1446 1570 -937 1264 214 128 21 chr9 38251518 38251853 -79610774 + MLT2D LTR ERVL 1 381 -33 354 45 0 0 chr9 38251853 38251897 -79610730 + (CA)n Simple_repeat Simple_repeat 2 45 0 1264 214 128 21 chr9 38251897 38251935 -79610692 + MLT2D LTR ERVL 381 414 0 1020 220 111 85 chr9 38251935 38252047 -79610580 + HAL1 LINE L1 1570 1678 -829 2096 119 7 7 chr9 38252047 38252332 -79610295 + AluSx SINE Alu 13 297 -15 1020 220 111 85 chr9 38252332 38252512 -79610115 + HAL1 LINE L1 1678 1879 -628 3150 158 48 79 chr9 38252966 38253154 -79609473 + L1PB4 LINE L1 5455 5647 -509 1520 119 0 0 chr9 38253154 38253356 -79609271 - AluSq SINE Alu -13 300 99 3150 158 48 79 chr9 38253356 38253878 -79608749 + L1PB4 LINE L1 5647 6143 -13 1221 217 49 48 chr9 38253988 38254468 -79608159 - MLT1E3 LTR MaLR 0 626 77 317 284 24 71 chr9 38254537 38254748 -79607879 + L1ME3 LINE L1 5961 6161 -1 1772 177 7 0 chr9 38256386 38256669 -79605958 + AluJo SINE Alu 1 285 -27 24 0 0 0 chr9 38256669 38256693 -79605934 + AT_rich Low_complexity Low_complexity 1 24 0 401 267 57 126 chr9 38259160 38259233 -79603394 + HAL1 LINE L1 844 920 -1587 2029 91 0 15 chr9 38259233 38259507 -79603120 + AluSx SINE Alu 28 297 -15 401 267 57 126 chr9 38259507 38259763 -79602864 + HAL1 LINE L1 920 1128 -1379 535 45 0 0 chr9 38259763 38259829 -79602798 - L1PA11 LINE L1 -5 6169 6104 401 267 57 126 chr9 38259829 38260008 -79602619 + HAL1 LINE L1 1128 1318 -1189 3348 110 8 6 chr9 38260017 38260491 -79602136 + L1PB1 LINE L1 5677 6151 0 319 312 48 30 chr9 38260621 38260908 -79601719 + HAL1b LINE L1 366 656 -692 349 374 0 24 chr9 38261137 38261260 -79601367 + L2 LINE L2 3153 3272 0 937 212 82 108 chr9 38261430 38261625 -79601002 - L1MC5 LINE L1 -33 7928 7729 1914 100 93 0 chr9 38261625 38261894 -79600733 - AluSg SINE Alu -15 295 2 937 212 82 108 chr9 38261894 38261948 -79600679 - L1MC5 LINE L1 -232 7729 7675 1880 162 0 3 chr9 38261948 38262244 -79600383 - AluJo SINE Alu -1 311 17 937 212 82 108 chr9 38262244 38262343 -79600284 - L1MC5 LINE L1 -286 7675 7575 2225 92 3 3 chr9 38262343 38262636 -79599991 - AluSx SINE Alu -19 293 1 2427 83 6 6 chr9 38262645 38262957 -79599670 - AluSp SINE Alu -1 312 1 937 212 82 108 chr9 38262957 38263224 -79599403 - L1MC5 LINE L1 -394 7567 7316 2342 111 0 0 chr9 38263224 38263531 -79599096 - AluSx SINE Alu 0 312 6 937 212 82 108 chr9 38263531 38263552 -79599075 - L1MC5 LINE L1 -645 7316 7296 1151 259 106 101 chr9 38263572 38264314 -79598313 - L1MC4a LINE L1 -945 6863 6113 1553 209 0 38 chr9 38264314 38264630 -79597997 + AluJb SINE Alu 1 304 -8 1151 259 106 101 chr9 38264630 38264917 -79597710 - L1MC4a LINE L1 -1695 6113 5829 209 352 172 0 chr9 38265091 38265236 -79597391 + MIR3 SINE MIR 32 201 -7 543 293 44 105 chr9 38265713 38266075 -79596552 + L2 LINE L2 2932 3271 -1 1118 248 20 106 chr9 38266081 38266589 -79596038 + L1ME3A LINE L1 5622 6085 -85 2149 111 23 13 chr9 38266624 38266930 -79595697 - AluSc SINE Alu 0 309 1 252 265 26 68 chr9 38268538 38268655 -79593972 + L3 LINE CR1 1353 1464 -113 1897 160 3 0 chr9 38269334 38269658 -79592969 + AluJo SINE Alu 1 312 0 4158 233 67 55 chr9 38269658 38271025 -79591602 + L1MD2 LINE L1 1098 2481 -4059 1614 206 82 3 chr9 38271026 38271356 -79591271 - MLT1A1 LTR MaLR 0 365 10 821 176 27 0 chr9 38271364 38271571 -79591056 + L1MD2 LINE L1 2479 2650 -3890 560 198 86 37 chr9 38271559 38271746 -79590881 + L1MD2 LINE L1 4270 4465 -2075 * 2026 243 20 40 chr9 38271741 38272349 -79590278 + L1MD2 LINE L1 4794 5389 -1151 1854 293 63 60 chr9 38272386 38273349 -79589278 + L1M2b LINE L1 14 979 -6230 9407 193 21 9 chr9 38273386 38276800 -79585827 + L1M2b LINE L1 1701 5155 -2053 804 199 31 5 chr9 38276802 38276993 -79585634 + L1M2b LINE L1 5326 5521 -1687 6060 156 24 30 chr9 38278547 38279261 -79583366 + L1MA5 LINE L1 4096 4812 -1488 2093 122 0 7 chr9 38279261 38279556 -79583071 + AluSx SINE Alu 1 293 -19 2355 106 0 0 chr9 38279564 38279867 -79582760 + AluSc SINE Alu 1 303 -6 6060 156 24 30 chr9 38279867 38280368 -79582259 + L1MA5 LINE L1 4819 5321 -979 2672 155 25 23 chr9 38280368 38280800 -79581827 + Tigger2a DNA MER2_type 1 433 -1 6060 156 24 30 chr9 38280800 38281750 -79580877 + L1MA5 LINE L1 5321 6261 -39 3854 214 29 28 chr9 38281743 38282808 -79579819 + L1MD2 LINE L1 5357 6541 -212 * 436 241 18 59 chr9 38282807 38282977 -79579650 + L1MD3 LINE L1 7832 7994 -1 * 1021 268 43 132 chr9 38282944 38283733 -79578894 + L1ME3A LINE L1 3891 4558 -1588 2198 103 0 0 chr9 38283733 38284051 -79578576 - AluSx SINE Alu 0 318 1 1021 268 43 132 chr9 38284051 38284365 -79578262 + L1ME3A LINE L1 4558 4898 -1248 866 221 98 14 chr9 38284394 38284670 -79577957 + L1ME3A LINE L1 5664 5962 -208 241 279 52 78 chr9 38284690 38284844 -79577783 + L1ME3A LINE L1 5925 6074 -96 481 264 181 0 chr9 38284964 38285119 -79577508 + L1MC4a LINE L1 5428 5610 -2198 320 184 68 48 chr9 38285121 38285224 -79577403 + L1MC4a LINE L1 5650 5754 -2054 2208 105 3 7 chr9 38285224 38285529 -79577098 + AluSx SINE Alu 1 304 -8 844 178 59 0 chr9 38285529 38285681 -79576946 + AluSg/x SINE Alu 132 292 -18 358 250 36 89 chr9 38285683 38285851 -79576776 + L1MC4a LINE L1 5747 5905 -1903 280 252 74 104 chr9 38286091 38286317 -79576310 + MIR SINE MIR 35 250 -12 186 43 0 0 chr9 38286324 38286347 -79576280 + (CTG)n Simple_repeat Simple_repeat 1 23 0 203 182 45 0 chr9 38287022 38287066 -79575561 + G-rich Low_complexity Low_complexity 4 49 0 2217 111 13 10 chr9 38287571 38287878 -79574749 - AluSx SINE Alu -4 308 1 396 355 60 6 chr9 38287912 38288261 -79574366 - L1ME4a LINE L1 -199 5922 5555 300 27 0 0 chr9 38288605 38288642 -79573985 + (CA)n Simple_repeat Simple_repeat 1 37 0 302 287 32 0 chr9 38288730 38288824 -79573803 - MIR3 SINE MIR -21 187 91 988 209 11 0 chr9 38289466 38289653 -79572974 + MER20 DNA MER1_type 31 219 0 253 331 144 0 chr9 38289949 38290088 -79572539 + MIR SINE MIR 28 186 -76 330 307 10 0 chr9 38291005 38291106 -79571521 + MIR SINE MIR 49 150 -58 2152 133 0 0 chr9 38293071 38293371 -79569256 - AluSx SINE Alu -8 304 5 431 187 33 0 chr9 38293393 38293484 -79569143 + MER103 DNA DNA 50 143 -23 2065 94 6 82 chr9 38293522 38293852 -79568775 - AluSx SINE Alu -7 305 1 463 181 0 0 chr9 38294118 38294190 -79568437 + FLAM SINE Alu 58 129 -14 469 292 95 60 chr9 38294423 38294738 -79567889 - L3 LINE CR1 -71 1506 1181 330 290 84 52 chr9 38295439 38295749 -79566878 + L1M4 LINE L1 3370 3689 -2457 22 0 0 0 chr9 38296044 38296066 -79566561 + AT_rich Low_complexity Low_complexity 1 22 0 357 276 20 10 chr9 38296356 38296454 -79566173 + GA-rich Low_complexity Low_complexity 2 100 0 445 236 7 7 chr9 38296474 38296618 -79566009 + GA-rich Low_complexity Low_complexity 1 144 0 3186 122 32 2 chr9 38297139 38297606 -79565021 + LTR39 LTR ERV1 1 481 -302 2122 107 0 14 chr9 38297606 38297897 -79564730 + AluSx SINE Alu 1 287 -25 8161 28 0 1 chr9 38297905 38298839 -79563788 + L1PA3 LINE L1 5222 6154 -1 37 81 0 0 chr9 38298839 38298925 -79563702 + AT_rich Low_complexity Low_complexity 1 86 0 401 140 73 207 chr9 38298932 38299082 -79563545 + LTR39 LTR ERV1 460 589 -194 2330 110 0 0 chr9 38299087 38299388 -79563239 - AluSq SINE Alu -12 301 1 1574 232 114 24 chr9 38300574 38300999 -79561628 + L1MC4 LINE L1 7449 7935 -107 351 0 0 0 chr9 38300999 38301038 -79561589 + (CA)n Simple_repeat Simple_repeat 2 40 0 1574 232 114 24 chr9 38301038 38301155 -79561472 + L1MC4 LINE L1 7935 8040 -2 732 197 0 38 chr9 38301434 38301566 -79561061 + AluJo/FLAM SINE Alu 1 127 -175 1836 173 3 3 chr9 38301576 38301876 -79560751 + AluJb SINE Alu 1 300 -12 1002 175 0 27 chr9 38301876 38302048 -79560579 - AluJb SINE Alu -11 301 133 287 318 46 31 chr9 38302048 38302138 -79560489 + L1ME LINE L1 5602 5689 -432 2507 70 0 6 chr9 38302138 38302451 -79560176 + AluY SINE Alu 1 311 0 287 318 46 31 chr9 38302451 38302555 -79560072 + L1ME LINE L1 5689 5799 -322 23 33 0 0 chr9 38302721 38302751 -79559876 + AT_rich Low_complexity Low_complexity 1 30 0 1888 152 44 0 chr9 38302767 38303064 -79559563 + AluSx SINE Alu 1 310 -2 423 246 49 1 chr9 38303250 38303393 -79559234 + L1M4 LINE L1 4718 4870 -1276 292 246 65 145 chr9 38303394 38303642 -79558985 + LTR50 LTR ERVL 1 228 -567 27 0 0 0 chr9 38303774 38303801 -79558826 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr9 38304482 38304505 -79558122 + (A)n Simple_repeat Simple_repeat 1 23 0 1120 97 0 13 chr9 38307127 38307281 -79555346 + AluSp SINE Alu 150 301 -12 1107 269 13 82 chr9 38308209 38308670 -79553957 - MLT1J LTR MaLR 0 511 83 739 133 148 7 chr9 38308671 38308806 -79553821 - MLT1A2 LTR MaLR -2 372 219 2016 113 3 0 chr9 38309624 38309937 -79552690 - AluSp SINE Alu 0 314 1 2064 69 0 4 chr9 38311363 38311624 -79551003 - AluY SINE Alu -17 294 35 870 254 83 53 chr9 38311695 38312092 -79550535 - MLT1J LTR MaLR -102 409 1 2546 148 29 12 chr9 38312245 38312664 -79549963 - MSTB LTR MaLR 0 426 1 26 50 0 0 chr9 38313744 38313784 -79548843 + AT_rich Low_complexity Low_complexity 1 40 0 1776 143 75 13 chr9 38313932 38314240 -79548387 - MER7A DNA MER2_type -1 345 21 37 0 0 0 chr9 38314456 38314493 -79548134 + AT_rich Low_complexity Low_complexity 1 37 0 2037 126 3 3 chr9 38314496 38314806 -79547821 - AluSx SINE Alu -2 310 1 785 146 26 57 chr9 38314826 38314892 -79547735 + MER53 DNA DNA 4 71 -118 2170 100 0 0 chr9 38314892 38315182 -79547445 - AluSg SINE Alu -20 290 1 785 146 26 57 chr9 38315182 38315307 -79547320 + MER53 DNA DNA 71 189 0 693 238 96 43 chr9 38315965 38316268 -79546359 + L1MC5 LINE L1 7610 7928 -33 2585 128 5 14 chr9 38316285 38316699 -79545928 + L1MB3 LINE L1 5773 6182 -1 303 43 0 0 chr9 38316903 38316949 -79545678 - L1PA4 LINE L1 0 6155 6110 1534 174 3 57 chr9 38316967 38317283 -79545344 - AluJo SINE Alu -9 303 5 221 350 40 20 chr9 38318376 38318476 -79544151 + MIR SINE MIR 8 109 -153 729 233 24 111 chr9 38318476 38318926 -79543701 - L1MC5 LINE L1 -39 7922 7512 704 257 137 26 chr9 38320310 38320604 -79542023 - L1ME4a LINE L1 -1 6120 5755 1966 125 3 3 chr9 38320604 38320907 -79541720 - AluSx SINE Alu -9 303 1 704 257 137 26 chr9 38320907 38321071 -79541556 - L1ME4a LINE L1 -366 5755 5611 944 254 203 47 chr9 38321419 38321714 -79540913 + L2 LINE L2 2248 2496 -817 2273 73 0 3 chr9 38321714 38322001 -79540626 + AluSp SINE Alu 1 286 -27 944 254 203 47 chr9 38322001 38322605 -79540022 + L2 LINE L2 2496 3313 0 2240 90 3 3 chr9 38322831 38323132 -79539495 + AluSc SINE Alu 1 301 -8 1937 129 17 7 chr9 38323816 38324118 -79538509 - AluJo SINE Alu -7 305 1 422 303 157 46 chr9 38324203 38324464 -79538163 - L3 LINE CR1 -108 1469 1180 1787 161 0 3 chr9 38324547 38324845 -79537782 + AluJb SINE Alu 1 297 -15 1447 146 28 7 chr9 38325138 38325549 -79537078 - LTR54 LTR ERV1 -5 505 1 1140 234 70 35 chr9 38325576 38325892 -79536735 - MLT1J LTR MaLR -13 498 172 2216 91 0 3 chr9 38326224 38326522 -79536105 - AluSc SINE Alu -12 297 1 2639 180 68 37 chr9 38326528 38326845 -79535782 - MER99 DNA DNA -2 826 520 639 195 132 37 chr9 38326845 38327035 -79535592 - MER63A DNA MER1_type -2 208 1 2639 180 68 37 chr9 38327035 38327333 -79535294 - MER99 DNA DNA -308 520 192 21 36 0 0 chr9 38327692 38327720 -79534907 + AT_rich Low_complexity Low_complexity 1 28 0 1610 128 9 128 chr9 38328013 38328348 -79534279 + AluJo SINE Alu 2 296 -6 362 316 0 0 chr9 38328350 38328448 -79534179 - MER99 DNA DNA -729 99 2 232 289 19 103 chr9 38328571 38328725 -79533902 + MIR SINE MIR 52 192 -62 317 221 91 0 chr9 38329503 38329580 -79533047 + LTR54 LTR ERV1 16 99 -411 525 169 87 182 chr9 38329717 38329948 -79532679 + MER57A LTR ERV1 195 403 0 180 0 0 0 chr9 38330175 38330195 -79532432 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 456 279 52 15 chr9 38330200 38330434 -79532193 - L1ME4a LINE L1 -296 5825 5643 1643 184 91 78 chr9 38330725 38330851 -79531776 - MLT1D LTR MaLR -15 490 367 1831 67 115 7 chr9 38330851 38331120 -79531507 + AluSc SINE Alu 1 298 -11 1643 184 91 78 chr9 38331120 38331477 -79531150 - MLT1D LTR MaLR -138 367 1 216 67 0 0 chr9 38332181 38332211 -79530416 + (TG)n Simple_repeat Simple_repeat 2 31 0 332 332 15 45 chr9 38332353 38332433 -79530194 - L1ME4a LINE L1 -3 6118 6037 2178 112 3 0 chr9 38332433 38332745 -79529882 + AluSq SINE Alu 1 313 0 332 332 15 45 chr9 38332745 38332863 -79529764 - L1ME4a LINE L1 -84 6037 5926 273 352 16 0 chr9 38332916 38333044 -79529583 - L1ME4a LINE L1 -1976 5832 5703 2072 122 0 0 chr9 38333814 38334118 -79528509 + AluSx SINE Alu 1 304 -8 229 272 138 0 chr9 38334315 38334428 -79528199 + MIR SINE MIR 116 250 -12 1916 83 61 4 chr9 38334428 38334706 -79527921 + AluY SINE Alu 1 294 -17 271 122 17 52 chr9 38335028 38335143 -79527484 + (CA)n Simple_repeat Simple_repeat 2 112 0 428 121 27 44 chr9 38335158 38335460 -79527167 + (CA)n Simple_repeat Simple_repeat 1 296 0 454 113 16 59 chr9 38335474 38335660 -79526967 + (CA)n Simple_repeat Simple_repeat 2 179 0 364 128 16 59 chr9 38335674 38335861 -79526766 + (CA)n Simple_repeat Simple_repeat 2 180 0 398 129 24 49 chr9 38335876 38336182 -79526445 + (CA)n Simple_repeat Simple_repeat 1 298 0 233 234 0 0 chr9 38336278 38336325 -79526302 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 192 152 0 0 chr9 38336347 38336380 -79526247 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 1381 205 3 24 chr9 38336827 38337162 -79525465 + AluJo SINE Alu 1 329 0 379 306 104 0 chr9 38337273 38337407 -79525220 + LTR16A LTR ERVL 301 448 -2 227 304 87 0 chr9 38340328 38340420 -79522207 - MIR SINE MIR -70 192 93 375 152 0 0 chr9 38342823 38342902 -79519725 + (TGG)n Simple_repeat Simple_repeat 3 81 0 189 0 0 0 chr9 38343078 38343099 -79519528 + (CAG)n Simple_repeat Simple_repeat 1 21 0 630 209 181 6 chr9 38343508 38343685 -79518942 + MIR SINE MIR 1 208 -54 306 304 32 16 chr9 38344933 38345058 -79517569 - MIR3 SINE MIR -1 207 81 986 47 78 0 chr9 38345382 38345510 -79517117 + MER85 DNA T2_type 1 138 -1 1802 163 20 3 chr9 38345524 38345825 -79516802 + AluJb SINE Alu 1 306 -6 273 265 128 10 chr9 38347311 38347507 -79515120 + HAL1 LINE L1 1143 1361 -1146 360 64 0 0 chr9 38347509 38347556 -79515071 + (TCTA)n Simple_repeat Simple_repeat 1 47 0 1675 143 7 24 chr9 38347556 38347843 -79514784 - AluJb SINE Alu -30 282 1 4330 118 48 41 chr9 38347921 38348698 -79513929 + L1MC1 LINE L1 5552 6333 0 415 302 108 3 chr9 38348797 38348874 -79513753 + L1M4 LINE L1 3628 3696 -2450 2310 70 0 7 chr9 38348874 38349174 -79513453 - AluSc SINE Alu -11 298 1 415 302 108 3 chr9 38349174 38349391 -79513236 + L1M4 LINE L1 3696 3953 -2193 10168 101 34 31 chr9 38349393 38349466 -79513161 + Tigger1 DNA MER2_type 1 72 -2346 2007 128 0 16 chr9 38349466 38349772 -79512855 + AluSx SINE Alu 1 301 -11 10168 101 34 31 chr9 38349772 38351248 -79511379 + Tigger1 DNA MER2_type 72 1555 -863 2226 153 59 25 chr9 38351225 38351438 -79511189 + Tigger1 DNA MER2_type 2014 2247 -171 * 2049 106 0 33 chr9 38351438 38351739 -79510888 - AluSg SINE Alu -19 291 1 2226 153 59 25 chr9 38351739 38351917 -79510710 + Tigger1 DNA MER2_type 2247 2418 0 324 248 79 134 chr9 38351952 38352154 -79510473 + L1M4 LINE L1 3974 4164 -1982 33 43 0 0 chr9 38352226 38352273 -79510354 + AT_rich Low_complexity Low_complexity 1 47 0 766 164 0 0 chr9 38352275 38352391 -79510236 + AluSq/x SINE Alu 3 118 -195 315 0 0 0 chr9 38352391 38352426 -79510201 + (TAA)n Simple_repeat Simple_repeat 2 36 0 354 358 28 51 chr9 38352430 38352684 -79509943 + L1M4 LINE L1 4289 4536 -1610 1319 138 15 0 chr9 38352817 38353020 -79509607 - AluJo SINE Alu -23 289 84 2010 120 0 3 chr9 38353948 38354247 -79508380 + AluSx SINE Alu 1 298 -14 237 301 171 8 chr9 38354549 38354672 -79507955 - L2 LINE L2 0 3313 3171 286 220 208 87 chr9 38354801 38354889 -79507738 - MIR SINE MIR -53 209 133 1798 123 51 3 chr9 38354889 38355181 -79507446 + AluSx SINE Alu 2 307 -5 286 220 208 87 chr9 38355181 38355265 -79507362 - MIR SINE MIR -129 133 16 1335 176 66 7 chr9 38355835 38356136 -79506491 + MER33 DNA MER1_type 3 321 -3 371 312 80 11 chr9 38356305 38356493 -79506134 + MER20B DNA MER1_type 16 217 -2 1937 109 3 14 chr9 38356584 38356877 -79505750 - AluSx SINE Alu -12 300 11 330 317 50 50 chr9 38357403 38357602 -79505025 - L2 LINE L2 -685 2629 2431 309 283 49 60 chr9 38357623 38357807 -79504820 - L2 LINE L2 -1524 1790 1609 1688 139 77 0 chr9 38357955 38358112 -79504515 - AluJb SINE Alu -18 294 150 441 0 0 0 chr9 38358112 38358161 -79504466 + (TG)n Simple_repeat Simple_repeat 2 50 0 1688 139 77 0 chr9 38358161 38358276 -79504351 - AluJb SINE Alu -162 150 1 1521 172 12 75 chr9 38358381 38358713 -79503914 + AluJb SINE Alu 1 311 -1 428 260 135 82 chr9 38358713 38359658 -79502969 + L1M4 LINE L1 2271 3266 -2880 209 159 0 45 chr9 38359644 38359660 -79502967 + A-rich Low_complexity Low_complexity 4 19 -26 * 1672 187 0 44 chr9 38359660 38359981 -79502646 + AluJo SINE Alu 3 309 -3 209 159 0 45 chr9 38359981 38360008 -79502619 + A-rich Low_complexity Low_complexity 19 45 0 1446 210 46 52 chr9 38360066 38360190 -79502437 + L1MB8 LINE L1 3090 3213 -2933 1941 140 62 0 chr9 38360190 38360482 -79502145 - AluSx SINE Alu -2 310 1 1446 210 46 52 chr9 38360482 38360882 -79501745 + L1MB8 LINE L1 3213 3610 -2536 5075 164 27 32 chr9 38360883 38361171 -79501456 + L1MB8 LINE L1 4866 5154 -1024 2491 68 0 0 chr9 38361171 38361482 -79501145 + AluY SINE Alu 1 311 0 5075 164 27 32 chr9 38361482 38361529 -79501098 + L1MB8 LINE L1 5154 5200 -978 2061 102 51 24 chr9 38361529 38361822 -79500805 + AluSg SINE Alu 1 301 -9 5075 164 27 32 chr9 38361822 38362745 -79499882 + L1MB8 LINE L1 5200 6116 -62 1857 127 33 4 chr9 38362745 38363052 -79499575 - AluSx SINE Alu 0 315 1 5075 164 27 32 chr9 38363052 38363115 -79499512 + L1MB8 LINE L1 6116 6178 0 275 304 81 25 chr9 38363131 38363292 -79499335 + L1M4 LINE L1 3369 3538 -2608 912 284 25 9 chr9 38363321 38363645 -79498982 + L1M4 LINE L1 3633 3961 -2185 324 0 0 0 chr9 38363713 38363749 -79498878 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr9 38363873 38363908 -79498719 + AT_rich Low_complexity Low_complexity 1 35 0 1625 254 71 52 chr9 38363916 38364009 -79498618 + L1M4 LINE L1 3951 4041 -2105 1628 175 10 41 chr9 38364009 38364351 -79498276 + AluJb SINE Alu 1 333 0 1625 254 71 52 chr9 38364351 38364389 -79498238 + L1M4 LINE L1 4041 4077 -2069 2000 104 19 0 chr9 38364389 38364659 -79497968 + AluSx SINE Alu 22 296 -16 1625 254 71 52 chr9 38364659 38365383 -79497244 + L1M4 LINE L1 4077 4824 -1322 357 82 0 0 chr9 38365572 38365621 -79497006 + (TA)n Simple_repeat Simple_repeat 2 50 0 290 266 47 64 chr9 38365718 38365951 -79496676 - HAL1 LINE L1 -1457 1050 822 980 155 25 10 chr9 38366391 38366591 -79496036 + L1 LINE L1 4406 4608 -1538 236 257 7 79 chr9 38367062 38367214 -79495413 + L1ME LINE L1 3759 3899 -2247 855 273 76 65 chr9 38367223 38368148 -79494479 + L1ME LINE L1 4490 5440 -681 1460 212 3 7 chr9 38368148 38368431 -79494196 + AluJo SINE Alu 1 282 -30 855 273 76 65 chr9 38368431 38368801 -79493826 + L1ME LINE L1 5440 5804 -317 2108 101 14 0 chr9 38368841 38369117 -79493510 + AluSq SINE Alu 1 280 -33 267 54 0 0 chr9 38369117 38369154 -79493473 + (TC)n Simple_repeat Simple_repeat 2 38 0 240 35 0 0 chr9 38369169 38369198 -79493429 + (TG)n Simple_repeat Simple_repeat 2 30 0 307 287 35 0 chr9 38369198 38369285 -79493342 + L1MC4 LINE L1 6614 6703 -1339 216 189 0 0 chr9 38369285 38369322 -79493305 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 1178 168 15 113 chr9 38369352 38369734 -79492893 + L1MD3 LINE L1 983 8046 -18 1591 260 123 52 chr9 38369748 38370913 -79491714 + L1MEc LINE L1 1064 2310 -4086 2319 90 0 7 chr9 38370925 38371226 -79491401 + AluSc SINE Alu 1 299 -10 1527 227 20 0 chr9 38371240 38371583 -79491044 + L1MEc LINE L1 2402 2751 -3464 * 3051 187 42 21 chr9 38371569 38372228 -79490399 + L1M4b LINE L1 885 1557 -5302 * 3159 201 52 16 chr9 38372227 38373257 -79489370 + L1M3 LINE L1 4573 5641 -542 2599 242 68 9 chr9 38373271 38374048 -79488579 + L1M4b LINE L1 1540 2362 -4597 744 199 7 7 chr9 38374229 38374365 -79488262 + AluJo SINE Alu 2 137 -175 2346 77 7 0 chr9 38374365 38374663 -79487964 + AluSg SINE Alu 1 300 -10 2414 62 0 3 chr9 38374817 38375109 -79487518 + AluY SINE Alu 1 291 -20 1065 127 0 24 chr9 38375109 38375275 -79487352 + AluSg/x SINE Alu 135 296 -14 1052 140 150 10 chr9 38375275 38375482 -79487145 + MSTB LTR MaLR 191 426 0 642 176 59 0 chr9 38375482 38375618 -79487009 + L1MB7 LINE L1 5866 6009 -175 * 5783 136 94 26 chr9 38375616 38376448 -79486179 - L1PBa LINE L1 -1624 5238 4464 2334 69 7 3 chr9 38376448 38376738 -79485889 + AluSp SINE Alu 14 304 -9 5783 136 94 26 chr9 38376738 38377509 -79485118 - L1PBa LINE L1 -2398 4464 1622 1341 105 0 0 chr9 38377610 38377781 -79484846 - AluSx SINE Alu -141 171 1 290 115 0 0 chr9 38377781 38377833 -79484794 - AluSq SINE Alu 0 301 250 1454 109 5 15 chr9 38377833 38378035 -79484592 - AluSq SINE Alu -113 200 1 324 0 0 0 chr9 38378048 38378084 -79484543 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 291 298 0 12 chr9 38378452 38378536 -79484091 - MIR SINE MIR -57 151 69 2213 89 7 0 chr9 38378861 38379143 -79483484 - AluSp SINE Alu -29 284 1 2289 106 0 13 chr9 38379146 38379449 -79483178 - AluSg SINE Alu -9 301 3 2335 88 3 25 chr9 38380000 38380319 -79482308 - AluSx SINE Alu 0 312 1 2817 13 0 0 chr9 38381092 38381399 -79481228 + AluYb8 SINE Alu 1 307 -11 3612 163 45 58 chr9 38381404 38381717 -79480910 + L1MB7 LINE L1 5391 5707 -477 2059 141 3 0 chr9 38381717 38382021 -79480606 + AluSx SINE Alu 2 306 -6 3612 163 45 58 chr9 38382021 38382512 -79480115 + L1MB7 LINE L1 5707 6184 0 1947 100 60 0 chr9 38382596 38382865 -79479762 - AluY SINE Alu -26 285 1 775 112 48 48 chr9 38384396 38384521 -79478106 + FLAM_C SINE Alu 2 126 -17 2338 86 10 0 chr9 38384532 38384836 -79477791 + AluSp SINE Alu 1 307 -6 2155 116 0 10 chr9 38384838 38385139 -79477488 + AluSg SINE Alu 1 298 -12 2150 68 31 34 chr9 38385665 38385957 -79476670 - AluY SINE Alu -20 291 1 25 31 0 0 chr9 38386014 38386046 -79476581 + AT_rich Low_complexity Low_complexity 1 32 0 804 182 8 0 chr9 38386368 38386500 -79476127 - AluSc SINE Alu -176 133 1 187 305 115 46 chr9 38387348 38387522 -79475105 - L2 LINE L2 -1038 2276 2091 5531 106 16 13 chr9 38387601 38388391 -79474236 + HSMAR1 DNA Mariner 1 793 -494 2304 101 3 0 chr9 38388391 38388689 -79473938 - AluSx SINE Alu -13 299 1 1772 156 46 0 chr9 38388691 38388974 -79473653 - AluSx SINE Alu -16 296 1 2167 115 0 10 chr9 38389083 38389378 -79473249 - AluSx SINE Alu -18 294 3 26 50 0 0 chr9 38389382 38389422 -79473205 + AT_rich Low_complexity Low_complexity 1 40 0 441 153 0 0 chr9 38389423 38389482 -79473145 - FLAM SINE Alu -26 117 59 423 111 312 0 chr9 38389586 38389692 -79472935 - MER30 DNA MER1_type -79 151 4 393 296 170 57 chr9 38389698 38390547 -79472080 + L2 LINE L2 2324 3259 -13 316 139 0 0 chr9 38390547 38390590 -79472037 + (TG)n Simple_repeat Simple_repeat 1 43 0 2214 86 4 4 chr9 38390593 38390872 -79471755 - AluSx SINE Alu -33 279 1 418 272 109 64 chr9 38390936 38391340 -79471287 + L1M4 LINE L1 4339 4760 -1386 2393 57 0 10 chr9 38391343 38391639 -79470988 - AluY SINE Alu -18 293 1 1817 191 103 2 chr9 38392307 38392706 -79469921 - REP3 LTR ERV 0 562 124 936 187 42 0 chr9 38392705 38392871 -79469756 - MER82 DNA MER2_type -462 191 19 * 2006 129 0 22 chr9 38394008 38394319 -79468308 - AluSx SINE Alu -8 304 1 231 231 0 39 chr9 38394327 38394379 -79468248 - MLT1J LTR MaLR -74 437 388 606 309 59 38 chr9 38394411 38394647 -79467980 - MLT1J LTR MaLR -193 318 78 728 269 65 7 chr9 38394729 38395023 -79467604 - L1M4 LINE L1 -1416 4730 4420 1155 158 96 14 chr9 38395301 38395510 -79467117 + MER30 DNA MER1_type 5 230 0 2073 128 0 3 chr9 38395685 38395973 -79466654 - AluSx SINE Alu -25 287 1 257 282 86 53 chr9 38396439 38396633 -79465994 + MIR SINE MIR 16 212 -50 382 232 24 64 chr9 38397568 38397693 -79464934 + MIR3 SINE MIR 2 121 -87 1166 156 47 5 chr9 38398033 38398244 -79464383 - MER46A DNA MER2_type 0 236 17 2274 83 0 49 chr9 38398301 38398627 -79464000 - AluY SINE Alu -1 310 1 1337 221 165 21 chr9 38398653 38399236 -79463391 - HsTC2 DNA Tc2 -60 1838 7 2283 84 0 3 chr9 38399239 38399523 -79463104 + AluSq SINE Alu 1 283 -30 256 267 20 30 chr9 38399647 38399748 -79462879 - L1ME3A LINE L1 -71 6099 6000 256 217 232 0 chr9 38399819 38399888 -79462739 - AluSc SINE Alu -7 292 208 494 180 66 33 chr9 38399990 38400112 -79462515 + MER20 DNA MER1_type 70 195 -24 21 0 0 0 chr9 38400318 38400339 -79462288 + AT_rich Low_complexity Low_complexity 1 21 0 959 220 0 6 chr9 38400339 38400507 -79462120 + FAM SINE Alu 4 170 -5 21 0 0 0 chr9 38400890 38400911 -79461716 + AT_rich Low_complexity Low_complexity 1 21 0 308 290 0 0 chr9 38400924 38400993 -79461634 - MER3 DNA MER1_type -131 78 10 1602 166 107 74 chr9 38401132 38401203 -79461424 - L1MB7 LINE L1 -1 6183 6116 2189 108 0 3 chr9 38401203 38401491 -79461136 + AluSx SINE Alu 1 287 -25 1602 166 107 74 chr9 38401491 38401895 -79460732 - L1MB7 LINE L1 -68 6116 5693 1028 188 33 19 chr9 38401913 38402183 -79460444 - L1MB7 LINE L1 -693 5491 5214 347 256 37 0 chr9 38402861 38402943 -79459684 - L2 LINE L2 -2 3270 3186 294 204 99 84 chr9 38403162 38403304 -79459323 - L1P4 LINE L1 -343 5820 5677 221 368 21 21 chr9 38404295 38404390 -79458237 + MIR SINE MIR 16 110 -152 456 193 83 28 chr9 38404614 38404723 -79457904 - MLT1E1 LTR MaLR -22 632 518 2489 63 7 0 chr9 38404739 38405039 -79457588 - AluSc SINE Alu -6 303 2 1522 174 34 34 chr9 38405042 38405335 -79457292 - AluJb SINE Alu -19 293 1 252 242 22 22 chr9 38405335 38405426 -79457201 + L1MEd LINE L1 87 177 -5942 345 317 56 52 chr9 38405473 38405722 -79456905 + L1MEd LINE L1 315 564 -5555 1470 179 24 30 chr9 38405806 38406102 -79456525 + MER49 LTR ERV1 1 294 -629 1190 223 61 31 chr9 38406146 38406473 -79456154 + MER4D LTR ERV1 567 903 0 349 231 179 15 chr9 38406480 38406614 -79456013 - MER5A DNA MER1_type 0 189 34 2302 81 0 0 chr9 38407762 38408045 -79454582 - AluSx SINE Alu -29 283 1 2397 81 0 3 chr9 38408054 38408352 -79454275 - AluSx SINE Alu -13 299 3 786 172 39 0 chr9 38408363 38408491 -79454136 - FLAM_A SINE Alu 0 133 1 670 229 20 7 chr9 38408520 38408673 -79453954 - MLT1F LTR MaLR -387 155 1 4021 85 21 0 chr9 38409035 38409553 -79453074 - L1PA13 LINE L1 0 6163 5635 509 186 81 16 chr9 38409653 38409777 -79452850 - MER3 DNA MER1_type -77 132 1 647 241 104 41 chr9 38410447 38410827 -79451800 + MLT1G LTR MaLR 115 543 -12 1803 141 37 27 chr9 38410993 38411291 -79451336 - AluJb SINE Alu -11 301 1 2057 105 16 33 chr9 38412059 38412365 -79450262 + AluSx SINE Alu 1 301 -11 1162 148 48 0 chr9 38412941 38413130 -79449497 - AluSg/x SINE Alu -5 307 110 225 94 0 0 chr9 38413255 38413287 -79449340 + (CA)n Simple_repeat Simple_repeat 2 33 0 2159 118 0 0 chr9 38413693 38413980 -79448647 - AluSx SINE Alu -25 287 1 633 207 0 0 chr9 38414145 38414256 -79448371 + AluJb SINE Alu 202 312 0 622 194 28 0 chr9 38414263 38414514 -79448113 + GA-rich Low_complexity Low_complexity 1 258 0 310 239 91 11 chr9 38414756 38414844 -79447783 - MIR SINE MIR -148 114 20 308 199 82 75 chr9 38415226 38415258 -79447369 + MER5A DNA MER1_type 4 34 -155 551 209 86 0 chr9 38415258 38415363 -79447264 + MER81 DNA DNA 1 114 0 308 199 82 75 chr9 38415363 38415452 -79447175 + MER5A DNA MER1_type 34 126 -63 205 50 25 25 chr9 38418496 38418536 -79444091 + (CGCGG)n Simple_repeat Simple_repeat 3 42 0 268 328 87 60 chr9 38419113 38419296 -79443331 + MIR3 SINE MIR 6 193 -15 727 119 25 25 chr9 38420137 38420255 -79442372 - AluJo SINE Alu 0 312 195 847 162 7 7 chr9 38420255 38420397 -79442230 - AluJo SINE Alu -170 142 1 623 190 8 33 chr9 38420596 38420717 -79441910 + MER3 DNA MER1_type 10 127 -82 21 0 0 0 chr9 38420908 38420929 -79441698 + AT_rich Low_complexity Low_complexity 1 21 0 349 267 74 30 chr9 38421118 38421253 -79441374 + L2 LINE L2 1560 1700 -1614 813 257 122 65 chr9 38421275 38422286 -79440341 - L1M4 LINE L1 -1029 5117 3883 2018 110 21 14 chr9 38422286 38422577 -79440050 + AluSx SINE Alu 1 293 -19 813 257 122 65 chr9 38422577 38422967 -79439660 - L1M4 LINE L1 -2263 3883 3516 207 277 190 76 chr9 38423764 38423948 -79438679 + L2 LINE L2 3062 3266 -6 1016 113 0 0 chr9 38424177 38424310 -79438317 + AluJb SINE Alu 1 133 -179 599 258 50 57 chr9 38425122 38425401 -79437226 - L1MC4a LINE L1 -1971 5837 5561 989 155 63 43 chr9 38425410 38425617 -79437010 - AluJb SINE Alu -17 295 85 1972 158 7 0 chr9 38426203 38426506 -79436121 + AluSx SINE Alu 1 305 -7 742 141 14 7 chr9 38426516 38426658 -79435969 + GA-rich Low_complexity Low_complexity 1 143 0 1337 102 0 0 chr9 38427624 38427800 -79434827 - AluSg/x SINE Alu -11 299 124 1276 109 36 41 chr9 38428147 38428367 -79434260 + L1MB3 LINE L1 5963 6181 -2 3321 132 39 26 chr9 38428370 38428865 -79433762 + L1MB3 LINE L1 5204 5796 -387 1808 166 3 27 chr9 38428865 38429166 -79433461 - AluSx SINE Alu -18 294 1 3321 132 39 26 chr9 38429166 38429350 -79433277 + L1MB3 LINE L1 5796 5976 -207 594 282 94 35 chr9 38429350 38429671 -79432956 + L2 LINE L2 2697 3029 -243 678 213 131 46 chr9 38429695 38429753 -79432874 + L1MB7 LINE L1 5808 5860 -320 2336 129 83 44 chr9 38429753 38429955 -79432672 + MSTB LTR MaLR 1 194 -232 2095 106 13 20 chr9 38429955 38430088 -79432539 + AluSx SINE Alu 1 133 -179 2262 106 3 0 chr9 38430088 38430380 -79432247 + AluSp SINE Alu 1 293 -20 2095 106 13 20 chr9 38430380 38430547 -79432080 + AluSx SINE Alu 133 299 -13 2336 129 83 44 chr9 38430547 38430754 -79431873 + MSTB LTR MaLR 194 426 0 678 213 131 46 chr9 38430754 38430911 -79431716 + L1MB7 LINE L1 5860 6040 -140 * 5837 168 68 31 chr9 38430888 38431712 -79430915 - L1PBa LINE L1 -1624 5238 4445 2339 68 0 7 chr9 38431712 38432004 -79430623 + AluSp SINE Alu 14 303 -10 5837 168 68 31 chr9 38432004 38434036 -79428591 - L1PBa LINE L1 -2417 4445 349 1402 154 21 9 chr9 38434040 38434273 -79428354 - AluSg/x SINE Alu -4 308 73 1948 136 0 0 chr9 38434359 38434645 -79427982 + AluSx SINE Alu 1 286 -26 4326 96 4 0 chr9 38434699 38435251 -79427376 + MER41A LTR ERV1 1 554 0 554 127 0 0 chr9 38435353 38435432 -79427195 - AluSp/q SINE Alu -13 300 222 1372 130 0 0 chr9 38435877 38436069 -79426558 - AluY SINE Alu -119 192 1 2341 98 3 0 chr9 38436486 38436793 -79425834 - AluSp SINE Alu -5 308 1 387 280 100 38 chr9 38436903 38437142 -79425485 + HAL1 LINE L1 1407 1660 -847 284 211 23 98 chr9 38437756 38437794 -79424833 + L1MEd LINE L1 55 94 -6025 2332 77 7 3 chr9 38437794 38438093 -79424534 - AluSp SINE Alu -13 300 1 1575 167 34 34 chr9 38438095 38438388 -79424239 - AluJb SINE Alu -19 293 1 284 211 23 98 chr9 38438388 38438479 -79424148 + L1MEd LINE L1 95 177 -5942 345 317 56 52 chr9 38438526 38438775 -79423852 + L1MEd LINE L1 315 564 -5555 1605 163 24 27 chr9 38438859 38439154 -79423473 + MER49 LTR ERV1 1 294 -629 1395 196 61 28 chr9 38439198 38439524 -79423103 + MER4D LTR ERV1 567 903 0 349 231 179 15 chr9 38439531 38439665 -79422962 - MER5A DNA MER1_type 0 189 34 1984 121 35 0 chr9 38440801 38441083 -79421544 - AluSc SINE Alu -17 292 1 187 305 115 46 chr9 38441932 38442106 -79420521 - L2 LINE L2 -1038 2276 2091 9473 101 14 18 chr9 38442185 38442974 -79419653 + HSMAR1 DNA Mariner 1 785 -502 2395 84 7 0 chr9 38442974 38443272 -79419355 - AluSq SINE Alu -13 300 1 9473 101 14 18 chr9 38443272 38443774 -79418853 + HSMAR1 DNA Mariner 785 1287 0 336 272 83 50 chr9 38443895 38444075 -79418552 - L1 LINE L1 -1488 4658 4473 3295 112 79 41 chr9 38444095 38444401 -79418226 + MER41A LTR ERV1 1 337 -217 2204 108 0 0 chr9 38444401 38444688 -79417939 - AluSx SINE Alu -18 294 8 3295 112 79 41 chr9 38444688 38444915 -79417712 + MER41A LTR ERV1 337 554 0 529 221 123 0 chr9 38445101 38445255 -79417372 + L1ME1 LINE L1 5993 6165 -1 358 278 169 16 chr9 38445401 38445463 -79417164 + L1ME3A LINE L1 5666 5717 -453 190 0 32 32 chr9 38445463 38445494 -79417133 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 358 278 169 16 chr9 38445494 38445679 -79416948 + L1ME3A LINE L1 5717 5951 -219 600 274 208 22 chr9 38446845 38447210 -79415417 + L2 LINE L2 2332 2764 -550 265 311 155 14 chr9 38447221 38447369 -79415258 + L2 LINE L2 2916 3084 -188 1977 124 0 24 chr9 38447459 38447773 -79414854 - AluSq SINE Alu 0 307 1 2335 94 10 0 chr9 38447789 38448098 -79414529 - AluSp SINE Alu -1 312 1 2344 96 7 0 chr9 38449472 38449774 -79412853 - AluSc SINE Alu -5 304 1 5291 67 63 0 chr9 38449914 38450561 -79412066 - LTR12 LTR ERV1 0 688 1 554 86 0 0 chr9 38450847 38450917 -79411710 - Alu SINE Alu -16 294 225 1176 137 0 0 chr9 38450917 38451078 -79411549 - AluSq SINE Alu -152 161 1 347 299 164 8 chr9 38451682 38451816 -79410811 + MIR3 SINE MIR 2 156 -52 269 123 0 77 chr9 38452468 38452533 -79410094 - L1MA4A LINE L1 -307 5996 5937 2011 77 67 27 chr9 38452798 38453095 -79409532 - AluSc SINE Alu 0 309 1 2119 130 0 3 chr9 38453170 38453470 -79409157 + AluSg SINE Alu 1 299 -11 509 185 0 22 chr9 38453561 38453653 -79408974 + MER21B LTR ERV1 1 90 -773 1572 212 72 40 chr9 38453698 38454096 -79408531 + MER21B LTR ERV1 87 497 -366 1696 170 84 9 chr9 38454096 38454419 -79408208 + MER7A DNA MER2_type 1 345 -1 966 242 71 30 chr9 38454424 38454721 -79407906 + MER21B LTR ERV1 501 809 -54 28 0 0 26 chr9 38455082 38455099 -79407528 + AT_rich Low_complexity Low_complexity 1 17 -21 2157 91 11 3 chr9 38455099 38455384 -79407243 + AluSp SINE Alu 1 287 -26 28 0 0 26 chr9 38455384 38455405 -79407222 + AT_rich Low_complexity Low_complexity 17 38 0 403 276 89 44 chr9 38455581 38455644 -79406983 + HAL1 LINE L1 2269 2328 -179 1341 206 47 38 chr9 38455644 38455797 -79406830 - MER2 DNA MER2_type -1 343 193 2048 112 0 50 chr9 38455797 38456100 -79406527 - AluSg SINE Alu -17 293 6 1341 206 47 38 chr9 38456100 38456286 -79406341 - MER2 DNA MER2_type -151 193 1 403 276 89 44 chr9 38456286 38456447 -79406180 + HAL1 LINE L1 2328 2503 -4 366 307 44 9 chr9 38456520 38456634 -79405993 + L2 LINE L2 3195 3312 -1 283 284 108 39 chr9 38456702 38456804 -79405823 + L2 LINE L2 3186 3294 -19 222 118 0 0 chr9 38457120 38457154 -79405473 + (TA)n Simple_repeat Simple_repeat 1 34 0 2156 111 10 0 chr9 38457173 38457471 -79405156 - AluY SINE Alu -10 301 1 1789 160 20 57 chr9 38457497 38457598 -79405029 - MLT1A1 LTR MaLR 0 365 262 2083 122 7 0 chr9 38457598 38457884 -79404743 + AluSp SINE Alu 3 290 -23 507 33 0 0 chr9 38457887 38457948 -79404679 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1789 160 20 57 chr9 38457948 38458192 -79404435 - MLT1A1 LTR MaLR -105 260 29 202 225 0 100 chr9 38458317 38458397 -79404230 + T-rich Low_complexity Low_complexity 2 73 0 195 330 220 0 chr9 38458398 38458498 -79404129 - L2 LINE L2 -18 3254 3133 506 216 96 78 chr9 38458628 38458846 -79403781 - MIR SINE MIR -12 250 29 2166 191 174 11 chr9 38458868 38459419 -79403208 + L1MB7 LINE L1 5521 6161 -23 186 43 0 0 chr9 38459429 38459452 -79403175 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1391 96 6 0 chr9 38459611 38459789 -79402838 + AluSg SINE Alu 1 179 -131 303 125 0 21 chr9 38459951 38459999 -79402628 + AluS SINE Alu 26 72 -229 2175 89 17 0 chr9 38460430 38460721 -79401906 - AluSg SINE Alu -14 296 1 21 36 0 0 chr9 38461565 38461593 -79401034 + AT_rich Low_complexity Low_complexity 1 28 0 2211 95 3 3 chr9 38461600 38461885 -79400742 + AluSc SINE Alu 2 286 -23 652 92 0 0 chr9 38462251 38462338 -79400289 - AluS SINE Alu -225 88 2 1425 139 19 56 chr9 38462342 38462609 -79400018 - L1M3 LINE L1 -512 5668 5412 2396 42 0 14 chr9 38462738 38463047 -79399580 + AluY SINE Alu 2 306 0 259 182 0 0 chr9 38463454 38463498 -79399129 - L1ME LINE L1 -460 5661 5618 25 51 0 0 chr9 38463535 38463574 -79399053 + AT_rich Low_complexity Low_complexity 1 39 0 2055 135 7 0 chr9 38463747 38464036 -79398591 + AluSx SINE Alu 1 291 -21 374 0 22 0 chr9 38464458 38464504 -79398123 + (TG)n Simple_repeat Simple_repeat 2 48 0 767 261 38 11 chr9 38464668 38464929 -79397698 + L1MC5 LINE L1 6961 7228 -733 339 323 45 18 chr9 38464948 38465171 -79397456 + L2 LINE L2 1782 2010 -1304 851 210 88 93 chr9 38465186 38465505 -79397122 - MLT1H1 LTR MaLR -4 551 233 4600 102 39 49 chr9 38465505 38466279 -79396348 + MER4E LTR ERV1 1 766 0 851 210 88 93 chr9 38466279 38466355 -79396272 - MLT1H1 LTR MaLR -322 233 158 2076 89 33 36 chr9 38466491 38466652 -79395975 - AluY SINE Alu -8 303 142 2473 77 3 0 chr9 38466652 38466949 -79395678 - AluSp SINE Alu -15 298 1 2076 89 33 36 chr9 38466949 38467091 -79395536 - AluY SINE Alu -169 142 1 612 243 144 8 chr9 38467093 38467336 -79395291 + Charlie7 DNA MER1_type 1991 2266 -346 1272 147 0 0 chr9 38467354 38467538 -79395089 + AluSg/x SINE Alu 114 297 -13 38 75 0 0 chr9 38467661 38467741 -79394886 + AT_rich Low_complexity Low_complexity 1 80 0 2243 92 0 27 chr9 38467754 38468092 -79394535 - AluSp SINE Alu 0 330 1 2044 84 29 4 chr9 38468096 38468429 -79394198 - AluSc SINE Alu 0 340 1 540 236 150 7 chr9 38468431 38468571 -79394056 - FRAM SINE Alu -6 160 1 1146 177 0 56 chr9 38468625 38468857 -79393770 - AluJo SINE Alu -92 220 2 250 302 0 0 chr9 38469291 38469354 -79393273 + L2 LINE L2 3169 3231 -41 284 248 128 9 chr9 38469429 38469538 -79393089 + LTR67 LTR ERVL 436 557 0 1856 100 68 25 chr9 38469593 38469873 -79392754 - AluSq SINE Alu -21 292 1 2150 136 0 0 chr9 38469875 38470170 -79392457 - AluSx SINE Alu -17 295 1 1949 142 48 0 chr9 38470322 38470611 -79392016 - AluSx SINE Alu -9 303 1 278 301 148 43 chr9 38470629 38470838 -79391789 - MIR SINE MIR -3 259 29 1729 67 31 5 chr9 38471602 38471825 -79390802 + MER30 DNA MER1_type 1 229 -1 1689 153 32 7 chr9 38471896 38472177 -79390450 + AluJb SINE Alu 1 288 -24 193 297 59 40 chr9 38472437 38472538 -79390089 + L2 LINE L2 3179 3281 -32 2392 70 13 0 chr9 38473291 38473593 -79389034 - AluY SINE Alu -5 306 1 2353 53 3 30 chr9 38474208 38474510 -79388117 + AluY SINE Alu 3 296 -15 262 269 43 11 chr9 38474860 38474953 -79387674 - L1MC4a LINE L1 -1639 6169 6074 296 286 32 65 chr9 38475022 38475176 -79387451 - L1MC4a LINE L1 -1871 5937 5789 390 219 73 51 chr9 38475211 38475348 -79387279 - L2 LINE L2 0 3313 3174 21 0 0 0 chr9 38475705 38475726 -79386901 + AT_rich Low_complexity Low_complexity 1 21 0 308 284 96 23 chr9 38476345 38476626 -79386001 - LTR38B LTR ERV1 -1 555 267 3492 174 28 32 chr9 38476627 38477344 -79385283 + L1MD1 LINE L1 5527 6240 -2 233 275 14 0 chr9 38477345 38477414 -79385213 + L1 LINE L1 4766 4835 -1311 396 256 26 8 chr9 38477420 38477537 -79385090 - LTR16C LTR ERVL -7 484 366 312 49 0 0 chr9 38477595 38477636 -79384991 + MLT2B2 LTR ERVL 1 41 -474 1037 90 0 0 chr9 38477737 38477871 -79384756 + AluY SINE Alu 156 289 -22 1733 165 28 30 chr9 38477876 38478239 -79384388 + L1MB7 LINE L1 5814 6175 -9 405 296 0 15 chr9 38478284 38478416 -79384211 + L1ME3A LINE L1 6041 6170 0 250 250 10 50 chr9 38478418 38478518 -79384109 + L1MC4a LINE L1 5827 5922 -1886 2292 95 0 3 chr9 38478707 38479001 -79383626 + AluSx SINE Alu 1 293 -19 302 182 15 0 chr9 38479026 38479092 -79383535 + (CATATA)n Simple_repeat Simple_repeat 5 71 0 255 137 95 63 chr9 38479108 38479203 -79383424 + Charlie2 DNA MER1_type 2728 2825 -37 182 157 98 20 chr9 38479304 38479355 -79383272 + MIR3 SINE MIR 109 163 -45 1648 197 10 10 chr9 38479771 38480070 -79382557 + AluJo SINE Alu 1 299 -13 358 211 0 0 chr9 38480235 38480306 -79382321 - LTR33 LTR ERVL -450 71 1 2415 94 0 0 chr9 38480341 38480640 -79381987 + AluSq SINE Alu 1 299 -14 2194 123 0 0 chr9 38480643 38480935 -79381692 + AluSg SINE Alu 1 292 -18 2441 83 0 3 chr9 38481189 38481489 -79381138 + AluSp SINE Alu 1 299 -14 2031 132 0 10 chr9 38481505 38481815 -79380812 + AluJb SINE Alu 1 307 -5 322 258 57 32 chr9 38481880 38482004 -79380623 + MER5A DNA MER1_type 1 127 -62 496 175 78 0 chr9 38483358 38483461 -79379166 + FLAM_A SINE Alu 24 134 -8 715 186 16 0 chr9 38483576 38483700 -79378927 - FLAM_A SINE Alu -4 129 4 24 53 0 0 chr9 38483820 38483858 -79378769 + AT_rich Low_complexity Low_complexity 1 38 0 507 105 56 5 chr9 38484201 38484324 -79378303 - MER30 DNA MER1_type -37 193 1 1919 121 0 83 chr9 38484635 38484980 -79377647 + AluSq SINE Alu 1 319 0 797 168 0 0 chr9 38484991 38485116 -79377511 + FLAM_A SINE Alu 1 125 -8 2220 107 3 3 chr9 38485117 38485406 -79377221 + AluSq SINE Alu 1 289 -24 23 0 0 0 chr9 38485407 38485430 -79377197 + AT_rich Low_complexity Low_complexity 1 23 0 1868 78 0 9 chr9 38485518 38485750 -79376877 + AluSg1 SINE Alu 3 232 -77 240 275 17 25 chr9 38486295 38486415 -79376212 - L1 LINE L1 -1538 4608 4490 530 263 110 54 chr9 38486432 38486858 -79375769 - L1 LINE L1 -1830 4316 3867 274 274 64 34 chr9 38486981 38487202 -79375425 - MER46C DNA MER2_type -7 331 68 374 244 133 99 chr9 38487236 38487308 -79375319 - L1 LINE L1 -3126 3020 2952 2052 102 3 32 chr9 38487308 38487593 -79375034 - AluSc SINE Alu -32 277 1 374 244 133 99 chr9 38487593 38487852 -79374775 - L1 LINE L1 -3194 2952 2678 771 146 0 8 chr9 38487971 38488094 -79374533 - AluSg/x SINE Alu -96 216 95 1691 149 20 33 chr9 38488216 38488518 -79374109 - AluSx SINE Alu -14 298 1 2372 97 0 3 chr9 38488519 38488830 -79373797 - AluSx SINE Alu 0 312 3 1931 161 0 7 chr9 38490548 38490839 -79371788 - AluSx SINE Alu -23 289 1 1166 102 28 11 chr9 38490881 38491057 -79371570 - L1PA11 LINE L1 -4 6170 5992 285 176 194 9 chr9 38491219 38491327 -79371300 + Charlie8 DNA MER1_type 31 158 -2259 21 0 0 0 chr9 38491810 38491831 -79370796 + AT_rich Low_complexity Low_complexity 1 21 0 2461 98 0 0 chr9 38492160 38492467 -79370160 + AluSx SINE Alu 6 312 0 2238 123 7 0 chr9 38492620 38492930 -79369697 + AluSx SINE Alu 1 312 0 2225 129 0 0 chr9 38493191 38493494 -79369133 + AluSx SINE Alu 1 303 -9 696 160 8 25 chr9 38493535 38493654 -79368973 - FLAM_C SINE Alu -26 117 1 2358 86 3 3 chr9 38494630 38494933 -79367694 - AluSp SINE Alu -10 303 1 22 0 0 0 chr9 38494937 38494959 -79367668 + AT_rich Low_complexity Low_complexity 1 22 0 1965 78 112 4 chr9 38495045 38495314 -79367313 - AluYa8 SINE Alu -10 300 3 1617 161 9 52 chr9 38495444 38495621 -79367006 - AluJb SINE Alu -2 310 152 2404 71 3 7 chr9 38495621 38495929 -79366698 - AluY SINE Alu -4 307 1 1617 161 9 52 chr9 38495929 38496075 -79366552 - AluJb SINE Alu -160 152 1 2276 91 3 7 chr9 38496131 38496427 -79366200 - AluSg1 SINE Alu -14 295 1 211 111 22 22 chr9 38496852 38496897 -79365730 + (TA)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr9 38496901 38496932 -79365695 + (CA)n Simple_repeat Simple_repeat 2 32 0 4132 212 79 23 chr9 38497194 38497644 -79364983 - L1MD2 LINE L1 -21 6338 5915 2160 112 3 7 chr9 38497644 38497953 -79364674 - AluSq SINE Alu 0 308 1 4132 212 79 23 chr9 38497953 38498696 -79363931 - L1MD2 LINE L1 -444 5915 5077 347 231 46 88 chr9 38498720 38498940 -79363687 + MER65-int LTR ERV1 1658 1801 -3070 2302 78 10 13 chr9 38498946 38499119 -79363508 - AluSq SINE Alu -6 307 134 2506 42 3 13 chr9 38499119 38499428 -79363199 - AluY SINE Alu -5 306 1 2302 78 10 13 chr9 38499428 38499562 -79363065 - AluSq SINE Alu -179 134 1 815 267 0 0 chr9 38499661 38499841 -79362786 - MER5A DNA MER1_type -6 183 4 7526 40 3 2 chr9 38500073 38501413 -79361214 - L1PA5 LINE L1 -2 6152 4813 19335 52 1 3 chr9 38501515 38503879 -79358748 - L1PA5 LINE L1 -3733 2413 56 2442 77 0 13 chr9 38503985 38504284 -79358343 - AluSg SINE Alu -15 295 1 2453 42 0 11 chr9 38504369 38504691 -79357936 - AluY SINE Alu 0 319 1 252 291 74 11 chr9 38504692 38504867 -79357760 + L1ME3A LINE L1 5767 5952 -218 270 279 10 19 chr9 38505380 38505484 -79357143 - MER5B DNA MER1_type -74 104 2 2575 44 0 3 chr9 38506175 38506471 -79356156 - AluY SINE Alu -16 295 1 2241 162 25 62 chr9 38506471 38506595 -79356032 - L1MB7 LINE L1 -353 5831 5704 2269 115 7 0 chr9 38506595 38506900 -79355727 + AluSp SINE Alu 1 307 -6 2241 162 25 62 chr9 38506900 38507257 -79355370 - L1MB7 LINE L1 -480 5704 5368 427 103 0 0 chr9 38507655 38507713 -79354914 - Alu SINE Alu -16 295 238 790 224 51 23 chr9 38507827 38508041 -79354586 + LTR16B LTR ERVL 244 463 -1 228 200 125 25 chr9 38508828 38508908 -79353719 + MER77 LTR ERV1 53 140 -465 774 247 199 11 chr9 38509053 38509324 -79353303 + MER77 LTR ERV1 277 598 -7 396 270 212 17 chr9 38509507 38509800 -79352827 + L1MC4 LINE L1 6690 7039 -1003 1904 154 0 7 chr9 38510059 38510357 -79352270 + AluSx SINE Alu 1 296 -16 2243 116 0 3 chr9 38510537 38510840 -79351787 + AluSx SINE Alu 1 302 -10 2176 110 0 17 chr9 38510992 38511292 -79351335 + AluSx SINE Alu 1 295 -17 610 187 110 70 chr9 38511332 38511599 -79351028 - L1MC5 LINE L1 -37 7924 7646 1344 185 27 64 chr9 38511599 38511741 -79350886 + AluJo SINE Alu 1 128 -174 2341 97 3 3 chr9 38511741 38512039 -79350588 + AluSx SINE Alu 4 301 -11 1344 185 27 64 chr9 38512039 38512069 -79350558 + AluJo SINE Alu 128 286 -16 807 161 0 8 chr9 38512069 38512193 -79350434 + AluJb SINE Alu 164 286 -26 3363 149 49 35 chr9 38512213 38512588 -79350039 + L1MB7 LINE L1 5445 5834 -350 2182 128 3 0 chr9 38512588 38512886 -79349741 + AluSx SINE Alu 1 299 -13 3363 149 49 35 chr9 38512886 38513186 -79349441 + L1MB7 LINE L1 5834 6129 -55 679 220 0 23 chr9 38513187 38513319 -79349308 - FRAM SINE Alu -22 154 26 2298 86 0 0 chr9 38513422 38513712 -79348915 - AluY SINE Alu -21 290 1 776 130 42 99 chr9 38514039 38514231 -79348396 - L1MB4 LINE L1 0 6180 6000 22 0 0 0 chr9 38514241 38514263 -79348364 + AT_rich Low_complexity Low_complexity 1 22 0 1991 98 4 0 chr9 38514610 38514865 -79347762 + AluSx SINE Alu 1 256 -56 448 247 49 58 chr9 38514926 38515149 -79347478 + L1MC5 LINE L1 7250 7470 -491 2248 103 0 7 chr9 38515159 38515461 -79347166 + AluSq SINE Alu 1 300 -13 189 0 0 0 chr9 38515470 38515491 -79347136 + (T)n Simple_repeat Simple_repeat 1 21 0 347 281 102 107 chr9 38515591 38516179 -79346448 - L1M2 LINE L1 -5446 1403 819 256 89 76 25 chr9 38517126 38517205 -79345422 + (TA)n Simple_repeat Simple_repeat 2 84 0 329 167 44 67 chr9 38517348 38517438 -79345189 + MIR3 SINE MIR 115 202 -6 584 224 8 30 chr9 38518250 38518384 -79344243 - FLAM_A SINE Alu 0 133 3 259 280 170 10 chr9 38518485 38518585 -79344042 + L2 LINE L2 3143 3258 -14 23 0 0 0 chr9 38519249 38519272 -79343355 + AT_rich Low_complexity Low_complexity 1 23 0 1758 116 11 54 chr9 38519272 38519548 -79343079 + AluSq SINE Alu 13 276 -37 1192 179 91 39 chr9 38519680 38519987 -79342640 - MER2 DNA MER2_type -22 323 1 24 53 0 0 chr9 38520061 38520099 -79342528 + AT_rich Low_complexity Low_complexity 1 38 0 2368 92 0 3 chr9 38520663 38520967 -79341660 - AluSx SINE Alu -9 303 1 1557 179 21 24 chr9 38522130 38522421 -79340206 + AluJo SINE Alu 12 301 -11 1201 235 28 84 chr9 38522649 38522834 -79339793 + MLT1A2 LTR MaLR 1 154 -220 1861 83 38 56 chr9 38522834 38523122 -79339505 + AluSc SINE Alu 2 284 -25 1201 235 28 84 chr9 38523122 38523328 -79339299 + MLT1A2 LTR MaLR 154 370 -4 1185 76 7 0 chr9 38523620 38523765 -79338862 + AluSq/x SINE Alu 1 146 -166 818 154 8 117 chr9 38523774 38524021 -79338606 + AluJo SINE Alu 85 304 -8 479 256 77 60 chr9 38524231 38524393 -79338234 - L1ME3 LINE L1 -265 5905 5723 2337 88 0 3 chr9 38524393 38524687 -79337940 - AluSq SINE Alu -20 293 1 479 256 77 60 chr9 38524687 38524804 -79337823 - L1ME3 LINE L1 -447 5723 5609 2394 88 0 0 chr9 38525382 38525687 -79336940 + AluSg SINE Alu 1 305 -5 277 258 132 19 chr9 38525698 38525857 -79336770 + L1MEd LINE L1 1007 1183 -4936 2222 114 0 23 chr9 38525859 38526167 -79336460 + AluSq SINE Alu 1 301 -12 1989 132 0 10 chr9 38526692 38526987 -79335640 - AluJb SINE Alu -20 292 1 25 31 0 0 chr9 38527044 38527076 -79335551 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 38527319 38527340 -79335287 + AT_rich Low_complexity Low_complexity 1 21 0 417 176 0 0 chr9 38527352 38527426 -79335201 + MER116 DNA Mariner 2 75 -5 1639 156 84 7 chr9 38528094 38528369 -79334258 + AluSx SINE Alu 1 296 -16 335 274 132 53 chr9 38529367 38529457 -79333170 + L1 LINE L1 3440 3522 -2624 2181 104 0 7 chr9 38529457 38529754 -79332873 + AluSx SINE Alu 1 295 -17 335 274 132 53 chr9 38529754 38529983 -79332644 + L1 LINE L1 3522 3784 -2362 263 247 149 7 chr9 38530862 38531006 -79331621 + L1 LINE L1 4032 4198 -1948 449 98 0 152 chr9 38531109 38531201 -79331426 + AluSc SINE Alu 216 293 -16 371 132 0 0 chr9 38531815 38531868 -79330759 + AluY SINE Alu 1 53 -249 2055 95 11 4 chr9 38531936 38532210 -79330417 - AluSq SINE Alu -37 276 1 2171 129 0 0 chr9 38533826 38534129 -79328498 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr9 38534361 38534384 -79328243 + AT_rich Low_complexity Low_complexity 1 23 0 1842 206 73 50 chr9 38535191 38535525 -79327102 + L1MB7 LINE L1 5644 5996 -188 1671 98 4 43 chr9 38535525 38535780 -79326847 + AluY SINE Alu 55 299 -12 1842 206 73 50 chr9 38535780 38535968 -79326659 + L1MB7 LINE L1 5996 6178 -6 328 298 59 29 chr9 38536034 38536187 -79326440 - MIR SINE MIR -67 141 12 24 32 0 0 chr9 38536830 38536861 -79325766 + AT_rich Low_complexity Low_complexity 1 31 0 327 238 212 42 chr9 38537096 38537285 -79325342 + MIR SINE MIR 10 230 -32 27 0 0 0 chr9 38537670 38537697 -79324930 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr9 38538421 38538442 -79324185 + AT_rich Low_complexity Low_complexity 1 21 0 374 109 18 0 chr9 38538915 38538970 -79323657 + AluJ/FLAM SINE Alu 9 64 -238 2428 53 7 3 chr9 38539294 38539594 -79323033 - AluY SINE Alu -10 301 1 1279 198 0 89 chr9 38540136 38540450 -79322177 + AluJo SINE Alu 1 286 -26 414 0 0 0 chr9 38541159 38541205 -79321422 + (TG)n Simple_repeat Simple_repeat 1 46 0 1262 207 161 102 chr9 38541231 38541676 -79320951 + MLT1E1 LTR MaLR 28 516 -138 2458 73 7 0 chr9 38541676 38541977 -79320650 + AluSc SINE Alu 1 303 -6 1262 207 161 102 chr9 38541977 38542102 -79320525 + MLT1E1 LTR MaLR 516 632 -22 221 368 21 21 chr9 38542326 38542421 -79320206 - MIR SINE MIR -152 110 16 294 204 99 84 chr9 38543412 38543554 -79319073 + L1P4 LINE L1 5677 5820 -343 347 256 37 0 chr9 38543773 38543855 -79318772 + L2 LINE L2 3186 3270 -2 1373 120 8 51 chr9 38544836 38544882 -79317745 + AluSg/x SINE Alu 88 134 -178 2243 98 0 0 chr9 38544882 38545188 -79317439 + AluSx SINE Alu 1 306 0 1373 120 8 51 chr9 38545188 38545374 -79317253 + AluSg/x SINE Alu 134 311 -1 1166 156 47 5 chr9 38545431 38545642 -79316985 + MER46A DNA MER2_type 17 236 0 849 179 6 13 chr9 38546062 38546218 -79316409 + AluSg/x SINE Alu 144 298 -12 573 190 127 0 chr9 38546462 38546604 -79316023 + MIR SINE MIR 21 180 -82 2449 71 0 0 chr9 38546629 38546926 -79315701 + AluY SINE Alu 1 297 -14 521 282 89 28 chr9 38546930 38547143 -79315484 + L2 LINE L2 3074 3299 -14 2407 93 3 0 chr9 38547760 38548072 -79314555 + AluSp SINE Alu 1 313 0 1869 156 3 20 chr9 38548328 38548653 -79313974 + AluSx SINE Alu 1 312 0 1030 125 42 36 chr9 38548653 38548821 -79313806 + AluSg/x SINE Alu 132 300 -10 197 256 111 44 chr9 38548893 38548983 -79313644 + L2 LINE L2 3218 3313 0 257 282 86 53 chr9 38550814 38551008 -79311619 - MIR SINE MIR -50 212 16 1891 121 17 30 chr9 38551474 38551772 -79310855 + AluSx SINE Alu 1 294 -18 964 76 15 0 chr9 38551949 38552080 -79310547 - AluSq/x SINE Alu -179 133 1 2368 69 3 3 chr9 38552576 38552879 -79309748 + AluSq SINE Alu 1 303 -10 2476 70 0 3 chr9 38553033 38553333 -79309294 + AluSg SINE Alu 1 299 -11 897 171 7 0 chr9 38553333 38553479 -79309148 + AluSg/x SINE Alu 132 278 -32 2313 111 0 0 chr9 38554029 38554335 -79308292 - AluSx SINE Alu -6 306 1 206 78 59 20 chr9 38554483 38554534 -79308093 + (TA)n Simple_repeat Simple_repeat 2 54 0 382 226 24 0 chr9 38554538 38554622 -79308005 - MIR SINE MIR -60 202 117 2464 174 28 13 chr9 38555015 38555475 -79307152 + MLT1C LTR MaLR 1 467 0 251 246 18 91 chr9 38556237 38556347 -79306280 - L2 LINE L2 -19 3253 3152 2229 103 3 7 chr9 38556384 38556684 -79305943 + AluSx SINE Alu 2 300 -12 2249 80 7 13 chr9 38556691 38556990 -79305637 + AluSx SINE Alu 1 297 -15 2521 70 0 0 chr9 38557689 38557988 -79304639 + AluSx SINE Alu 1 299 -13 2367 93 3 6 chr9 38557991 38558303 -79304324 + AluSp SINE Alu 3 313 0 414 77 115 160 chr9 38558303 38558333 -79304294 + Charlie5 DNA MER1_type 2433 2463 -161 1386 200 62 22 chr9 38558333 38558608 -79304019 + AluJo SINE Alu 2 287 -25 414 77 115 160 chr9 38558608 38558733 -79303894 + Charlie5 DNA MER1_type 2463 2581 -43 808 97 0 9 chr9 38558733 38558846 -79303781 + AluSg/x SINE Alu 195 306 -3 293 146 21 0 chr9 38558846 38558894 -79303733 + Charlie5 DNA MER1_type 2576 2624 0 2108 114 17 0 chr9 38559174 38559472 -79303155 - AluSx SINE Alu -9 303 1 1079 234 40 63 chr9 38559477 38559827 -79302800 - MER20B DNA MER1_type -283 500 159 694 199 23 34 chr9 38559886 38560062 -79302565 - L1MD2 LINE L1 -11 6348 6175 558 268 13 26 chr9 38560062 38560215 -79302412 - L1MD2 LINE L1 -144 6215 6065 815 230 5 0 chr9 38560231 38560422 -79302205 + L1PBa LINE L1 6 197 -6666 * 5640 119 31 40 chr9 38560419 38561350 -79301277 + L1PBa LINE L1 1392 2315 -4548 2297 116 3 0 chr9 38561350 38561653 -79300974 + AluSx SINE Alu 1 304 -8 5640 119 31 40 chr9 38561653 38561712 -79300915 + L1PBa LINE L1 2315 2373 -4490 2232 89 7 7 chr9 38561713 38562006 -79300621 - AluSp SINE Alu -20 293 1 651 89 0 0 chr9 38562039 38562129 -79300498 - AluSp/q SINE Alu -9 304 215 1801 201 32 50 chr9 38562130 38562274 -79300353 - L1MD2 LINE L1 -469 5890 5745 1699 181 10 7 chr9 38562274 38562567 -79300060 + AluJb SINE Alu 1 294 -18 1801 201 32 50 chr9 38562567 38562732 -79299895 - L1MD2 LINE L1 -614 5745 5589 2437 93 0 0 chr9 38562732 38563042 -79299585 + AluSg SINE Alu 1 310 0 1801 201 32 50 chr9 38563042 38563169 -79299458 - L1MD2 LINE L1 -770 5589 5461 258 329 14 0 chr9 38563177 38563250 -79299377 - MER20B DNA MER1_type -708 75 2 752 269 6 6 chr9 38563257 38563432 -79299195 - MER5B DNA MER1_type -3 175 1 2074 122 4 0 chr9 38563506 38563777 -79298850 + AluSg SINE Alu 1 272 -38 2168 134 0 0 chr9 38564081 38564379 -79298248 + AluSx SINE Alu 3 300 -12 401 322 29 6 chr9 38564379 38564539 -79298088 + MIR SINE MIR 37 202 -60 2078 117 7 27 chr9 38564687 38564987 -79297640 + AluSx SINE Alu 1 294 -18 1945 128 29 4 chr9 38564987 38565268 -79297359 + AluSq SINE Alu 1 288 -25 2479 49 0 49 chr9 38565277 38565591 -79297036 + AluY SINE Alu 1 300 -11 183 42 0 0 chr9 38565591 38565615 -79297012 + (CA)n Simple_repeat Simple_repeat 2 25 0 2479 49 0 49 chr9 38565615 38565627 -79297000 + AluY SINE Alu 300 311 0 821 154 0 0 chr9 38565649 38565791 -79296836 - FLAM_C SINE Alu 0 142 1 333 247 177 70 chr9 38565812 38565905 -79296722 - MER5A DNA MER1_type -6 183 101 1988 134 20 13 chr9 38565905 38566067 -79296560 - AluJb SINE Alu -11 301 135 2242 94 14 10 chr9 38566067 38566364 -79296263 - AluSg SINE Alu -12 298 1 1988 134 20 13 chr9 38566364 38566500 -79296127 - AluJb SINE Alu -177 135 1 333 247 177 70 chr9 38566500 38566564 -79296063 - MER5A DNA MER1_type -88 101 9 1045 258 67 60 chr9 38566576 38566814 -79295813 - L1MC5 LINE L1 -90 7871 7636 2495 84 0 0 chr9 38566814 38567125 -79295502 - AluY SINE Alu 0 311 1 1045 258 67 60 chr9 38567125 38567230 -79295397 - L1MC5 LINE L1 -325 7636 7533 2193 113 30 0 chr9 38567230 38567530 -79295097 - AluSg SINE Alu -1 309 1 1045 258 67 60 chr9 38567530 38567802 -79294825 - L1MC5 LINE L1 -428 7533 7251 1997 123 0 24 chr9 38568044 38568373 -79294254 - AluSx SINE Alu 0 322 1 1048 156 57 62 chr9 38568375 38568586 -79294041 - AluJo SINE Alu -14 298 89 617 190 91 0 chr9 38568608 38568729 -79293898 + FLAM_C SINE Alu 1 132 -1 1146 128 69 0 chr9 38568742 38568930 -79293697 + AluSp SINE Alu 3 203 -110 512 124 0 5 chr9 38568930 38569051 -79293576 + AluSp SINE Alu 69 249 -64 1202 163 9 23 chr9 38569052 38569273 -79293354 + AluSg/x SINE Alu 83 300 -10 863 189 13 13 chr9 38569299 38569458 -79293169 + FRAM SINE Alu 1 159 -17 2405 112 0 0 chr9 38569778 38570090 -79292537 - AluSx SINE Alu 0 312 1 2359 89 3 16 chr9 38570100 38570414 -79292213 - AluSq SINE Alu -3 310 1 378 344 37 23 chr9 38570672 38570890 -79291737 + L1M4 LINE L1 2882 3102 -3044 789 135 0 57 chr9 38571029 38571170 -79291457 - FLAM_C SINE Alu 0 133 1 2587 71 3 0 chr9 38571184 38571494 -79291133 - AluSp SINE Alu -2 311 1 1878 143 11 0 chr9 38571496 38571776 -79290851 - AluJo SINE Alu -19 293 11 1667 130 8 50 chr9 38572079 38572340 -79290287 - AluSx SINE Alu -14 298 49 1977 117 19 49 chr9 38572546 38572682 -79289945 + AluSx SINE Alu 1 139 -173 2477 100 0 0 chr9 38572682 38572992 -79289635 + AluSx SINE Alu 1 310 -2 1977 117 19 49 chr9 38572992 38573162 -79289465 + AluSx SINE Alu 139 298 -14 1137 143 6 0 chr9 38573162 38573337 -79289290 + AluSg/x SINE Alu 132 307 -3 2193 82 14 4 chr9 38573342 38573648 -79288979 + AluSc SINE Alu 1 309 0 2127 120 0 17 chr9 38573890 38574182 -79288445 - AluSx SINE Alu -25 287 1 741 275 77 62 chr9 38574284 38574753 -79287874 + MLT1K LTR MaLR 1 476 0 589 198 85 28 chr9 38574766 38574943 -79287684 + MLT1G3 LTR MaLR 7 193 -402 817 219 227 0 chr9 38574954 38575192 -79287435 + MLT1G3 LTR MaLR 144 435 -95 1107 119 0 13 chr9 38575192 38575343 -79287284 - AluSg/x SINE Alu -82 230 82 327 127 0 32 chr9 38575363 38575426 -79287201 + MLT1G3 LTR MaLR 481 541 -1 2050 138 3 10 chr9 38575485 38575797 -79286830 + AluSx SINE Alu 1 310 -2 2224 134 0 0 chr9 38576531 38576829 -79285798 - AluSx SINE Alu -12 300 3 429 193 0 0 chr9 38576834 38576917 -79285710 - L1ME2 LINE L1 -7 6157 6075 1978 120 47 97 chr9 38576920 38577019 -79285608 + THE1B LTR MaLR 1 103 -261 2351 94 0 3 chr9 38577019 38577316 -79285311 - AluSc SINE Alu -13 296 1 1978 120 47 97 chr9 38577316 38577382 -79285245 + THE1B LTR MaLR 103 171 -193 2219 89 3 33 chr9 38577382 38577685 -79284942 - AluY SINE Alu -17 294 1 1978 120 47 97 chr9 38577685 38577901 -79284726 + THE1B LTR MaLR 171 364 0 9911 81 78 34 chr9 38577901 38578331 -79284296 + THE1B-int LTR MaLR 1 411 -1169 2096 161 3 0 chr9 38578331 38578642 -79283985 - AluSx SINE Alu 0 312 1 9911 81 78 34 chr9 38578642 38578657 -79283970 + THE1B-int LTR MaLR 411 424 -1156 2161 125 10 0 chr9 38578657 38578953 -79283674 - AluSx SINE Alu -13 299 1 9911 81 78 34 chr9 38578953 38580020 -79282607 + THE1B-int LTR MaLR 424 1580 0 668 109 146 0 chr9 38580020 38580130 -79282497 + THE1B LTR MaLR 1 126 -238 2254 105 3 7 chr9 38580131 38580427 -79282200 - AluSx SINE Alu -7 305 11 2283 116 13 0 chr9 38580461 38580763 -79281864 - AluSx SINE Alu -6 306 1 3110 157 27 77 chr9 38580770 38581000 -79281627 - MER6 DNA MER2_type -168 697 457 2095 111 27 3 chr9 38581000 38581297 -79281330 - AluSg SINE Alu -6 304 1 3110 157 27 77 chr9 38581297 38581401 -79281226 - MER6 DNA MER2_type -408 457 349 2314 78 41 0 chr9 38581401 38581696 -79280931 - AluY SINE Alu -4 307 1 3110 157 27 77 chr9 38581696 38582053 -79280574 - MER6 DNA MER2_type -516 349 52 2034 137 0 10 chr9 38582053 38582352 -79280275 + AluJo SINE Alu 1 296 -16 3110 157 27 77 chr9 38582352 38582399 -79280228 - MER6 DNA MER2_type -813 52 4 2469 63 0 16 chr9 38582442 38582745 -79279882 - AluY SINE Alu -13 298 1 244 154 46 0 chr9 38582748 38582820 -79279807 - L1M LINE L1 -778 5384 5306 533 225 179 7 chr9 38583068 38583219 -79279408 - MER5B DNA MER1_type -1 177 1 2262 109 0 10 chr9 38583390 38583701 -79278926 + AluSg SINE Alu 1 308 -2 1101 200 55 65 chr9 38583978 38584288 -79278339 + MER58B DNA MER1_type 1 307 -34 727 130 19 0 chr9 38584300 38584408 -79278219 - AluJb SINE Alu -201 111 2 2218 104 7 7 chr9 38584668 38584966 -79277661 - AluSp SINE Alu -15 298 1 5505 46 0 25 chr9 38585024 38585154 -79277473 + L1PA5 LINE L1 5480 5612 -542 2514 63 0 3 chr9 38585154 38585453 -79277174 + AluY SINE Alu 1 298 -13 5505 46 0 25 chr9 38585453 38586012 -79276615 + L1PA5 LINE L1 5612 6152 -2 906 261 0 0 chr9 38586244 38586424 -79276203 + MER5A DNA MER1_type 4 183 -6 2136 116 7 10 chr9 38586523 38586657 -79275970 + AluSx SINE Alu 1 134 -178 2513 42 3 13 chr9 38586657 38586966 -79275661 + AluY SINE Alu 1 306 -5 2136 116 7 10 chr9 38586966 38587132 -79275495 + AluSx SINE Alu 134 300 -12 974 151 0 0 chr9 38587141 38587306 -79275321 + AluSg/x SINE Alu 144 308 0 457 69 0 0 chr9 38587311 38587369 -79275258 + Alu SINE Alu 2 59 -251 407 131 0 0 chr9 38588065 38588126 -79274501 - AluSc SINE Alu -15 294 234 2312 117 0 0 chr9 38588161 38588470 -79274157 - AluSg SINE Alu -1 309 1 1067 112 0 0 chr9 38588472 38588615 -79274012 - FRAM SINE Alu -16 160 18 2352 92 0 0 chr9 38588820 38589113 -79273514 + AluSc SINE Alu 1 293 -16 475 195 70 70 chr9 38589181 38589281 -79273346 + MER33 DNA MER1_type 1 103 -2482 2441 90 3 0 chr9 38589281 38589591 -79273036 - AluSp SINE Alu -2 311 1 475 195 70 70 chr9 38589591 38589618 -79273009 + MER33 DNA MER1_type 102 128 -196 1397 118 5 0 chr9 38589718 38589904 -79272723 + AluSp SINE Alu 112 298 -15 4179 92 4 0 chr9 38590006 38590558 -79272069 - MER41A LTR ERV1 0 554 1 2037 131 0 0 chr9 38590611 38590901 -79271726 - AluSx SINE Alu -22 290 1 1397 148 32 0 chr9 38590987 38591204 -79271423 + AluSg/x SINE Alu 71 294 -16 2186 119 6 6 chr9 38591206 38591517 -79271110 + AluSq SINE Alu 1 311 -2 2109 146 8 26 chr9 38591522 38591899 -79270728 - MER41B LTR ERV1 -136 499 130 2342 104 0 3 chr9 38591965 38592272 -79270355 - AluSg SINE Alu -4 306 1 343 90 124 22 chr9 38592273 38592362 -79270265 - L1M LINE L1 -2414 5394 5297 2359 56 0 14 chr9 38592366 38592675 -79269952 - AluY SINE Alu 0 305 1 2447 74 0 0 chr9 38592675 38592971 -79269656 - AluY SINE Alu -12 299 4 2035 208 73 40 chr9 38593140 38593659 -79268968 + MLT2B3 LTR ERVL 1 536 -18 985 124 0 96 chr9 38593661 38593839 -79268788 - AluSg/x SINE Alu -15 297 137 566 150 63 0 chr9 38593840 38593903 -79268724 + L1MD1 LINE L1 6107 6165 -77 1961 164 0 7 chr9 38593903 38594232 -79268395 - AluJb SINE Alu 0 312 1 566 150 63 0 chr9 38594232 38594295 -79268332 + L1MD1 LINE L1 6165 6241 -1 384 323 140 0 chr9 38594361 38594525 -79268102 - L1ME4a LINE L1 -94 6027 5841 389 184 149 0 chr9 38594527 38594614 -79268013 + MER53 DNA DNA 1 100 -89 2185 117 10 0 chr9 38594782 38595072 -79267555 - AluSg SINE Alu -11 299 7 1995 115 3 21 chr9 38595072 38595359 -79267268 - AluSx SINE Alu -30 282 1 1917 131 21 7 chr9 38595365 38595655 -79266972 - AluSx SINE Alu -18 294 1 25 31 0 0 chr9 38595776 38595808 -79266819 + AT_rich Low_complexity Low_complexity 1 32 0 2419 89 3 0 chr9 38595817 38596119 -79266508 + AluSp SINE Alu 1 303 -10 861 210 0 25 chr9 38596119 38596276 -79266351 - FRAM SINE Alu -27 149 1 269 234 109 34 chr9 38596276 38596423 -79266204 + MIR SINE MIR 103 261 -1 1242 176 38 86 chr9 38596493 38596806 -79265821 - AluJo SINE Alu -3 299 2 2388 78 0 33 chr9 38596810 38597116 -79265511 - AluY SINE Alu -15 296 1 2254 116 3 3 chr9 38597120 38597422 -79265205 - AluSx SINE Alu -10 302 1 288 259 111 28 chr9 38598265 38598373 -79264254 + L2 LINE L2 3197 3313 0 2067 114 11 4 chr9 38598515 38598828 -79263799 + AluSx SINE Alu 1 315 0 2146 109 41 0 chr9 38598851 38599144 -79263483 + AluSg SINE Alu 1 305 -5 2121 99 14 0 chr9 38599186 38599468 -79263159 - AluSp SINE Alu -14 299 14 6621 120 17 10 chr9 38599477 38600103 -79262524 + Tigger1 DNA MER2_type 218 857 -1561 2307 75 3 36 chr9 38600103 38600411 -79262216 + AluSp SINE Alu 1 298 -15 6621 120 17 10 chr9 38600411 38600823 -79261804 + Tigger1 DNA MER2_type 857 1264 -1154 824 230 0 0 chr9 38600824 38600996 -79261631 - FRAM SINE Alu 0 169 1 5911 122 24 14 chr9 38600996 38601336 -79261291 + Tigger1 DNA MER2_type 1248 1583 -835 2520 67 0 3 chr9 38601336 38601636 -79260991 + AluY SINE Alu 1 299 -12 5911 122 24 14 chr9 38601636 38602239 -79260388 + Tigger1 DNA MER2_type 1583 2200 -218 369 145 0 0 chr9 38602239 38602301 -79260326 + MER57A LTR ERV1 1 62 -341 514 101 0 22 chr9 38602316 38602405 -79260222 + (TTCCC)n Simple_repeat Simple_repeat 3 89 0 1985 129 6 32 chr9 38602422 38602733 -79259894 - AluSx SINE Alu -9 303 1 1370 186 11 74 chr9 38602733 38603099 -79259528 + MER57A LTR ERV1 54 396 -7 1323 80 23 6 chr9 38603100 38603275 -79259352 + AluJo SINE Alu 1 178 -134 232 252 210 28 chr9 38603275 38603489 -79259138 - Charlie2 DNA MER1_type -2583 279 27 29 28 0 0 chr9 38603640 38603676 -79258951 + GC_rich Low_complexity Low_complexity 1 36 0 381 322 42 0 chr9 38603923 38604066 -79258561 + MIR SINE MIR 29 177 -85 2413 76 0 3 chr9 38604330 38604632 -79257995 - AluSq SINE Alu -12 301 1 2049 106 0 64 chr9 38605128 38605457 -79257170 + AluSx SINE Alu 1 308 -4 2368 87 7 3 chr9 38605680 38605980 -79256647 + AluSg1 SINE Alu 1 301 -8 200 194 0 0 chr9 38606408 38606444 -79256183 + GA-rich Low_complexity Low_complexity 4 39 0 2206 113 0 3 chr9 38607356 38607657 -79254970 - AluSx SINE Alu -12 300 1 510 57 14 14 chr9 38608058 38608128 -79254499 + Alu SINE Alu 2 71 -247 392 200 23 2 chr9 38609073 38609170 -79253457 + MIR SINE MIR 39 136 -72 43 35 0 0 chr9 38609510 38609567 -79253060 + GC_rich Low_complexity Low_complexity 1 57 0 252 137 0 0 chr9 38609616 38609667 -79252960 + (CGG)n Simple_repeat Simple_repeat 3 53 0 351 232 23 28 chr9 38609691 38609868 -79252759 + (CGG)n Simple_repeat Simple_repeat 3 178 0 278 240 53 13 chr9 38610959 38611034 -79251593 - L2 LINE L2 -52 3261 3184 439 331 159 33 chr9 38611662 38611881 -79250746 - L2 LINE L2 -438 2876 2686 2086 148 79 57 chr9 38611881 38611936 -79250691 + MSTC LTR MaLR 1 53 -375 2348 78 0 0 chr9 38611936 38612250 -79250377 + AluSx SINE Alu 1 314 0 2086 148 79 57 chr9 38612250 38612612 -79250015 + MSTC LTR MaLR 53 428 0 439 331 159 33 chr9 38612612 38612812 -79249815 - L2 LINE L2 -628 2686 2404 2391 67 3 0 chr9 38613039 38613353 -79249274 + AluSp SINE Alu 1 315 0 367 110 22 88 chr9 38613353 38613444 -79249183 - L1MB4 LINE L1 -8 6172 6088 1172 117 0 53 chr9 38613444 38613632 -79248995 + AluSg/x SINE Alu 130 307 -2 1469 147 42 25 chr9 38613635 38613921 -79248706 - L1MB4 LINE L1 -77 6103 5813 2041 144 0 22 chr9 38613937 38614257 -79248370 - AluSp SINE Alu 0 313 1 1419 139 19 56 chr9 38614260 38614527 -79248100 - L1MB4 LINE L1 -512 5668 5412 2389 42 0 14 chr9 38614656 38614940 -79247687 + AluY SINE Alu 2 281 -30 226 0 0 0 chr9 38614940 38614965 -79247662 + (GAAAA)n Simple_repeat Simple_repeat 1 150 0 257 182 0 0 chr9 38615372 38615416 -79247211 - L1ME LINE L1 -460 5661 5618 25 51 0 0 chr9 38615453 38615492 -79247135 + AT_rich Low_complexity Low_complexity 1 39 0 1935 143 7 0 chr9 38615665 38615966 -79246661 + AluSx SINE Alu 1 303 -9 320 0 25 0 chr9 38616376 38616416 -79246211 + (TG)n Simple_repeat Simple_repeat 2 42 0 758 261 38 11 chr9 38616580 38616841 -79245786 + L1MC5 LINE L1 6961 7228 -733 403 317 43 26 chr9 38616860 38617090 -79245537 + L2 LINE L2 1782 2015 -1299 858 210 88 93 chr9 38617098 38617417 -79245210 - MLT1H1 LTR MaLR -4 551 233 4598 101 39 49 chr9 38617417 38618191 -79244436 + MER4E LTR ERV1 1 766 0 858 210 88 93 chr9 38618191 38618267 -79244360 - MLT1H1 LTR MaLR -322 233 158 1943 89 33 36 chr9 38618403 38618564 -79244063 - AluY SINE Alu -8 303 142 2329 78 3 0 chr9 38618564 38618860 -79243767 - AluSp SINE Alu -16 297 1 1943 89 33 36 chr9 38618860 38619002 -79243625 - AluY SINE Alu -169 142 1 802 159 0 29 chr9 38619050 38619188 -79243439 - AluJo SINE Alu -177 135 2 1973 90 61 0 chr9 38619217 38619495 -79243132 + AluSp SINE Alu 1 295 -18 1991 143 0 0 chr9 38619858 38620165 -79242462 + AluSx SINE Alu 1 307 -5 500 315 153 18 chr9 38620172 38620505 -79242122 - MLT1K LTR MaLR -74 514 137 2133 84 7 13 chr9 38620571 38620870 -79241757 - AluSx SINE Alu -15 297 1 2128 103 3 7 chr9 38620877 38621177 -79241450 - AluSx SINE Alu -12 300 2 256 254 18 91 chr9 38621214 38621324 -79241303 + L2 LINE L2 3152 3253 -19 2320 174 28 13 chr9 38622086 38622546 -79240081 - MLT1C LTR MaLR 0 467 1 400 238 20 20 chr9 38622922 38623023 -79239604 + MIR SINE MIR 102 202 -60 206 78 59 20 chr9 38623027 38623078 -79239549 + (TA)n Simple_repeat Simple_repeat 2 54 0 2223 108 0 0 chr9 38623226 38623532 -79239095 + AluSx SINE Alu 1 306 -6 1661 148 3 18 chr9 38624082 38624228 -79238399 - AluSx SINE Alu -32 280 138 2313 67 3 0 chr9 38624228 38624525 -79238102 - AluY SINE Alu -12 299 2 1661 148 3 18 chr9 38624525 38624662 -79237965 - AluSx SINE Alu -174 138 1 1186 225 20 49 chr9 38624825 38624911 -79237716 - L1ME3 LINE L1 -38 6124 6037 2236 82 0 38 chr9 38624911 38625229 -79237398 + AluSp SINE Alu 1 306 -7 1186 225 20 49 chr9 38625229 38625591 -79237036 - L1ME3 LINE L1 -125 6037 5514 923 184 0 0 chr9 38625593 38625751 -79236876 + FRAM SINE Alu 1 158 -18 371 197 0 0 chr9 38625752 38625823 -79236804 - L1ME3 LINE L1 -639 5525 5455 2321 82 3 0 chr9 38626777 38627080 -79235547 - AluSp SINE Alu -9 304 1 2134 92 3 32 chr9 38627144 38627458 -79235169 - AluSx SINE Alu -7 305 1 235 305 122 23 chr9 38627640 38627771 -79234856 + MIR3 SINE MIR 3 146 -62 244 293 181 0 chr9 38627796 38627912 -79234715 - MIR SINE MIR -56 206 70 211 292 28 14 chr9 38627974 38628046 -79234581 - L2 LINE L2 0 3313 3241 2196 84 7 7 chr9 38628119 38628417 -79234210 + AluSx SINE Alu 2 299 -13 1898 146 7 0 chr9 38628450 38628745 -79233882 - AluY SINE Alu -14 297 1 2369 52 16 0 chr9 38629040 38629345 -79233282 - AluY SINE Alu -1 310 1 2189 103 0 6 chr9 38629364 38629676 -79232951 - AluSx SINE Alu -1 311 2 216 152 0 0 chr9 38630012 38630045 -79232582 - MER5B DNA MER1_type -3 175 143 1076 201 92 22 chr9 38630078 38630351 -79232276 + L1ME3 LINE L1 5804 6095 -67 284 332 36 67 chr9 38630930 38631123 -79231504 + L3 LINE CR1 1156 1342 -235 578 135 22 0 chr9 38631144 38631260 -79231367 + AluSg/x SINE Alu 189 306 0 180 260 55 14 chr9 38631682 38631755 -79230872 - MIR SINE MIR -48 214 139 2015 116 13 3 chr9 38631888 38632190 -79230437 - AluSg SINE Alu -5 305 1 335 270 11 34 chr9 38632210 38632299 -79230328 + L2 LINE L2 3186 3272 0 1865 133 7 0 chr9 38632403 38632696 -79229931 - AluSx SINE Alu -17 295 1 255 310 14 0 chr9 38632884 38632955 -79229672 + CT-rich Low_complexity Low_complexity 1 72 0 188 317 0 0 chr9 38633007 38633048 -79229579 - L2 LINE L2 -91 3181 3141 520 218 68 38 chr9 38633350 38633483 -79229144 - MIR3 SINE MIR -7 201 65 2259 99 0 0 chr9 38633546 38633848 -79228779 - AluSc SINE Alu -7 302 1 610 119 8 10 chr9 38634014 38634275 -79228352 + AluSx SINE Alu 1 309 -3 2294 79 3 13 chr9 38634285 38634589 -79228038 + AluSp SINE Alu 1 301 -12 353 274 32 11 chr9 38634589 38634677 -79227950 + L1MC4 LINE L1 6612 6704 -1338 352 220 44 55 chr9 38634598 38634689 -79227938 - L1MC4 LINE L1 -1339 6703 6614 * 338 86 76 19 chr9 38634690 38634795 -79227832 + (TA)n Simple_repeat Simple_repeat 1 111 0 355 228 71 86 chr9 38634799 38635028 -79227599 + L1MC4 LINE L1 1948 6989 -1333 1815 156 0 7 chr9 38635028 38635323 -79227304 + AluJb SINE Alu 1 293 -19 241 178 0 0 chr9 38635356 38635401 -79227226 - MER113 DNA MER1_type? -473 48 4 1180 147 6 0 chr9 38635455 38635625 -79227002 + FAM SINE Alu 1 171 -4 2384 62 3 16 chr9 38635858 38636165 -79226462 - AluSp SINE Alu -9 304 2 319 194 15 0 chr9 38636266 38636342 -79226285 + MIR SINE MIR 45 121 -87 279 288 0 0 chr9 38636392 38636465 -79226162 + GA-rich Low_complexity Low_complexity 1 73 0 479 331 36 57 chr9 38636743 38636991 -79225636 + L2 LINE L2 3028 3270 -2 255 347 54 20 chr9 38637023 38637170 -79225457 + L3 LINE CR1 1178 1329 -248 1158 148 72 10 chr9 38637173 38637382 -79225245 + AluSg/x SINE Alu 80 301 -9 325 317 42 33 chr9 38637396 38637516 -79225111 + MER91A DNA MER1_type 69 189 -7 * 426 270 68 7 chr9 38637511 38637659 -79224968 + MIR SINE MIR 35 191 -71 1268 151 0 148 chr9 38637666 38637788 -79224839 + AluJo SINE Alu 1 139 -173 2447 47 0 0 chr9 38637788 38638088 -79224539 + AluY SINE Alu 1 300 -11 1268 151 0 148 chr9 38638088 38638120 -79224507 + AluJo SINE Alu 139 174 -138 1542 173 39 3 chr9 38638120 38638403 -79224224 - AluJb SINE Alu -19 293 1 2148 108 0 0 chr9 38638407 38638702 -79223925 - AluSx SINE Alu -17 295 1 1268 151 0 148 chr9 38638702 38638873 -79223754 + AluJo SINE Alu 177 283 -29 2158 78 0 3 chr9 38638957 38639271 -79223356 - AluSp SINE Alu 0 313 1 206 204 0 20 chr9 38639577 38639626 -79223001 + MIR3 SINE MIR 150 197 -11 2400 67 0 6 chr9 38639880 38640195 -79222432 - AluSp SINE Alu 0 313 1 836 179 0 73 chr9 38640198 38640377 -79222250 - AluJo/FRAM SINE Alu 0 302 137 1320 123 27 69 chr9 38640380 38640640 -79221987 - AluSx SINE Alu -2 310 62 2161 98 16 0 chr9 38640654 38640959 -79221668 - AluSg SINE Alu 0 310 1 873 114 91 0 chr9 38640959 38641091 -79221536 - AluSq/x SINE Alu -169 144 1 2083 81 0 42 chr9 38641244 38641552 -79221075 + AluSc SINE Alu 1 295 -14 270 0 0 0 chr9 38641681 38641711 -79220916 + (CA)n Simple_repeat Simple_repeat 1 30 0 327 130 0 0 chr9 38641816 38641870 -79220757 + (CCCCCT)n Simple_repeat Simple_repeat 6 59 0 1596 160 29 4 chr9 38641870 38642151 -79220476 - AluSx SINE Alu -10 302 15 979 103 34 0 chr9 38642184 38642361 -79220266 - AluSg/x SINE Alu 0 313 132 2129 114 0 0 chr9 38642361 38642658 -79219969 - AluSx SINE Alu -9 303 7 264 268 202 16 chr9 38642688 38642871 -79219756 + MER102b DNA MER1_type 98 314 -27 563 240 48 92 chr9 38643567 38643730 -79218897 + L1MA10 LINE L1 5959 6128 -201 1843 149 0 42 chr9 38643730 38643877 -79218750 + AluJb SINE Alu 1 130 -172 1765 126 49 14 chr9 38643877 38644012 -79218615 + AluSx SINE Alu 1 130 -182 2240 103 0 0 chr9 38644012 38644314 -79218313 + AluSc SINE Alu 1 302 -7 1765 126 49 14 chr9 38644314 38644463 -79218164 + AluSx SINE Alu 130 295 -17 1843 149 0 42 chr9 38644463 38644624 -79218003 + AluJb SINE Alu 130 296 -6 563 240 48 92 chr9 38644624 38644676 -79217951 + L1MA10 LINE L1 6128 6324 -5 868 228 117 60 chr9 38644696 38644885 -79217742 + Charlie7 DNA MER1_type 1807 1984 -628 2264 81 0 23 chr9 38644885 38645195 -79217432 - AluY SINE Alu -8 303 1 2116 118 0 16 chr9 38645197 38645373 -79217254 - AluSx SINE Alu -3 309 139 2291 78 3 10 chr9 38645373 38645680 -79216947 - AluSq SINE Alu -8 305 1 2116 118 0 16 chr9 38645680 38645817 -79216810 - AluSx SINE Alu -173 139 1 868 228 117 60 chr9 38645817 38646059 -79216568 + Charlie7 DNA MER1_type 1984 2266 -346 1200 147 0 0 chr9 38646077 38646261 -79216366 + AluSg/x SINE Alu 114 297 -13 38 75 0 0 chr9 38646384 38646464 -79216163 + AT_rich Low_complexity Low_complexity 1 80 0 2095 95 0 27 chr9 38646479 38646815 -79215812 - AluSp SINE Alu 0 328 1 1940 84 29 4 chr9 38646819 38647144 -79215483 - AluSc SINE Alu 0 332 1 545 236 150 7 chr9 38647146 38647286 -79215341 - AluJo SINE Alu -6 296 137 1054 176 0 60 chr9 38647340 38647573 -79215054 - AluJo SINE Alu -92 220 2 269 302 0 0 chr9 38648007 38648070 -79214557 + L2 LINE L2 3169 3231 -41 284 248 128 9 chr9 38648145 38648254 -79214373 + LTR67 LTR ERVL 436 557 0 2248 74 0 14 chr9 38648309 38648605 -79214022 - AluSq SINE Alu -21 292 1 362 344 37 23 chr9 38648865 38649083 -79213544 + L1M4 LINE L1 2882 3102 -3044 774 135 0 57 chr9 38649222 38649363 -79213264 - AluJo SINE Alu -169 133 1 2459 68 3 0 chr9 38649377 38649687 -79212940 - AluSp SINE Alu -2 311 1 1740 143 11 0 chr9 38649689 38649969 -79212658 - AluJo SINE Alu -19 293 11 1552 128 8 56 chr9 38650272 38650538 -79212089 - AluSx SINE Alu -11 301 49 1830 117 19 49 chr9 38650744 38650880 -79211747 + AluSx SINE Alu 1 139 -173 2295 103 0 0 chr9 38650880 38651191 -79211436 + AluSx SINE Alu 1 311 -1 1830 117 19 49 chr9 38651191 38651361 -79211266 + AluSx SINE Alu 139 298 -14 1068 137 6 0 chr9 38651361 38651536 -79211091 + AluSg/x SINE Alu 134 309 -3 2012 86 14 4 chr9 38651541 38651847 -79210780 + AluSc SINE Alu 1 309 0 1736 139 0 14 chr9 38652879 38653166 -79209461 + AluSx SINE Alu 15 297 -15 1037 167 4 66 chr9 38653189 38653282 -79209345 - AluJo SINE Alu -99 213 116 2212 92 7 3 chr9 38653282 38653588 -79209039 - AluSp SINE Alu -6 307 1 1037 167 4 66 chr9 38653588 38653721 -79208906 - AluJo SINE Alu -196 116 1 242 221 86 71 chr9 38653786 38653926 -79208701 - L1 LINE L1 -1093 5053 4912 201 258 112 22 chr9 38654384 38654473 -79208154 + L2 LINE L2 611 707 -2607 579 254 49 32 chr9 38654477 38654490 -79208137 + L2 LINE L2 3126 3137 -176 2055 96 0 17 chr9 38654490 38654644 -79207983 - AluSg SINE Alu -24 286 131 255 31 0 0 chr9 38654644 38654676 -79207951 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2201 80 3 0 chr9 38654676 38654962 -79207665 - AluSq SINE Alu -26 287 1 2055 96 0 17 chr9 38654962 38655097 -79207530 - AluSg SINE Alu -177 133 1 579 254 49 32 chr9 38655097 38655268 -79207359 + L2 LINE L2 3137 3313 0 21 57 0 0 chr9 38655495 38655530 -79207097 + AT_rich Low_complexity Low_complexity 1 35 0 1884 120 65 0 chr9 38655671 38655963 -79206664 - AluY SINE Alu 0 311 1 2113 97 7 0 chr9 38655963 38656253 -79206374 - AluSq SINE Alu -21 292 1 22 0 0 0 chr9 38656260 38656282 -79206345 + AT_rich Low_complexity Low_complexity 1 22 0 239 175 0 0 chr9 38656284 38656324 -79206303 - MER57A LTR ERV1 -68 335 296 466 225 141 71 chr9 38656325 38656365 -79206262 - L1M4 LINE L1 -757 5389 5353 2175 97 0 3 chr9 38656365 38656663 -79205964 - AluSg SINE Alu -13 297 1 466 225 141 71 chr9 38656663 38656839 -79205788 - L1M4 LINE L1 -793 5353 5191 592 142 150 0 chr9 38656839 38656952 -79205675 - FLAM_A SINE Alu -3 130 1 466 225 141 71 chr9 38656952 38657182 -79205445 - L1M4 LINE L1 -955 5191 4911 266 227 0 0 chr9 38657540 38657584 -79205043 - L2 LINE L2 -511 2803 2760 2411 49 10 13 chr9 38657597 38657901 -79204726 - AluY SINE Alu -6 305 3 667 227 57 74 chr9 38657915 38658144 -79204483 - L2 LINE L2 -535 2779 2555 330 191 79 95 chr9 38658183 38658309 -79204318 - L1ME3 LINE L1 -2 6160 6037 817 244 101 5 chr9 38658345 38658562 -79204065 - L2 LINE L2 -775 2539 2302 2441 54 0 0 chr9 38658611 38658908 -79203719 - AluY SINE Alu -14 297 1 24 0 0 0 chr9 38659184 38659208 -79203419 + AT_rich Low_complexity Low_complexity 1 24 0 2571 39 0 0 chr9 38659631 38659940 -79202687 - AluY SINE Alu -2 309 1 2156 83 0 49 chr9 38659942 38660268 -79202359 - AluY SINE Alu -1 310 1 1493 204 7 3 chr9 38660355 38660654 -79201973 - AluJo SINE Alu -12 300 1 374 287 25 25 chr9 38660726 38660848 -79201779 - L3 LINE CR1 -111 1466 1345 2201 116 3 0 chr9 38660931 38661242 -79201385 - AluSx SINE Alu 0 312 1 1690 170 3 7 chr9 38661290 38661579 -79201048 + AluJo SINE Alu 1 288 -24 758 206 55 47 chr9 38661596 38661694 -79200933 - Charlie2 DNA MER1_type -677 2185 2089 1762 159 3 7 chr9 38661694 38661995 -79200632 + AluJb SINE Alu 1 300 -12 758 206 55 47 chr9 38661995 38662149 -79200478 - Charlie2 DNA MER1_type -773 2089 1931 2048 66 48 4 chr9 38662490 38662784 -79199843 - AluY SINE Alu 0 306 1 2077 113 0 0 chr9 38662949 38663241 -79199386 - AluSg SINE Alu -9 301 10 1062 56 126 0 chr9 38663256 38663399 -79199228 - AluSp SINE Alu -19 294 134 1728 114 50 27 chr9 38663399 38663698 -79198929 - AluSg SINE Alu 0 310 5 1940 88 34 44 chr9 38663709 38664005 -79198622 - AluSp SINE Alu -20 293 1 2208 91 3 0 chr9 38664018 38664314 -79198313 - AluSp SINE Alu -16 297 1 299 185 49 25 chr9 38664422 38664503 -79198124 - L1MC4 LINE L1 0 8042 7960 312 337 143 10 chr9 38664511 38664707 -79197920 - L3 LINE CR1 -459 1118 897 2221 65 7 3 chr9 38664790 38665082 -79197545 - AluY SINE Alu -18 293 1 2413 80 3 0 chr9 38665556 38665855 -79196772 - AluY SINE Alu -11 300 1 1666 192 32 21 chr9 38665874 38666213 -79196414 - MLT1C LTR MaLR 0 467 125 1628 168 0 53 chr9 38666444 38666748 -79195879 + AluJo SINE Alu 16 303 -9 1970 151 0 3 chr9 38666926 38667224 -79195403 + AluJb SINE Alu 1 297 -15 1713 150 42 24 chr9 38667284 38667571 -79195056 + AluJo SINE Alu 1 292 -20 734 179 0 22 chr9 38667649 38667783 -79194844 - AluJo SINE Alu -177 135 5 2219 115 3 10 chr9 38667799 38668112 -79194515 - AluSx SINE Alu -1 311 1 1016 181 63 82 chr9 38668431 38668734 -79193893 - L1ME2 LINE L1 -9 6155 5859 227 236 55 91 chr9 38668758 38668868 -79193759 - L1ME2 LINE L1 -1934 5874 5769 2048 180 20 8 chr9 38668884 38669239 -79193388 + MLT1A1 LTR MaLR 7 365 0 425 179 45 134 chr9 38669239 38669305 -79193322 - L1ME2 LINE L1 -2070 5738 5668 267 31 0 0 chr9 38669305 38669337 -79193290 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2099 63 71 4 chr9 38669339 38669607 -79193020 - AluSg SINE Alu -24 286 1 425 179 45 134 chr9 38669607 38669716 -79192911 - L1ME2 LINE L1 -2141 5667 5576 1561 127 0 0 chr9 38670560 38670780 -79191847 - AluSx SINE Alu -10 302 83 2425 62 0 3 chr9 38670781 38671071 -79191556 - AluY SINE Alu -22 289 1 596 160 0 0 chr9 38671072 38671166 -79191461 - AluSx SINE Alu -217 95 2 1290 127 6 6 chr9 38671241 38671422 -79191205 - AluJb SINE Alu -11 301 121 2019 156 0 0 chr9 38671444 38671751 -79190876 - AluSx SINE Alu -5 307 1 2275 42 0 8 chr9 38671928 38672192 -79190435 - AluY SINE Alu -49 262 1 2420 96 3 0 chr9 38672209 38672521 -79190106 - AluSp SINE Alu 0 313 1 676 197 7 22 chr9 38672634 38672771 -79189856 - AluJo SINE Alu -176 136 2 2405 89 0 19 chr9 38674370 38674685 -79187942 + AluSx SINE Alu 1 309 -3 245 278 90 38 chr9 38674862 38674995 -79187632 - L2 LINE L2 0 3272 3133 2042 100 52 0 chr9 38675442 38675737 -79186890 - AluSx SINE Alu 0 309 1 2373 74 0 7 chr9 38675745 38676042 -79186585 - AluY SINE Alu -16 295 1 2313 217 39 25 chr9 38676240 38676852 -79185775 - L1MC4 LINE L1 0 8042 7422 4137 139 6 3 chr9 38676916 38677564 -79185063 - L1MB2 LINE L1 -2 6169 5520 2335 104 10 0 chr9 38677568 38677866 -79184761 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr9 38677918 38677939 -79184688 + AT_rich Low_complexity Low_complexity 1 21 0 2395 90 3 0 chr9 38678088 38678387 -79184240 - AluSp SINE Alu -13 300 1 240 206 110 0 chr9 38678437 38678510 -79184117 - MIR SINE MIR -73 135 55 238 311 37 75 chr9 38678719 38678880 -79183747 - MER5A DNA MER1_type -29 160 6 1769 160 0 7 chr9 38678959 38679234 -79183393 - AluJo SINE Alu -11 301 29 2244 99 3 0 chr9 38679482 38679795 -79182832 - AluSp SINE Alu 0 316 3 1374 96 0 92 chr9 38679797 38680026 -79182601 - AluSx SINE Alu -3 307 100 852 78 0 0 chr9 38680079 38680182 -79182445 - AluSx SINE Alu -210 103 1 2106 132 3 0 chr9 38680183 38680472 -79182155 - AluSx SINE Alu -22 290 1 381 131 0 0 chr9 38680476 38680537 -79182090 - AluSp/q SINE Alu -1 302 242 1112 140 18 12 chr9 38680537 38680708 -79181919 - AluSx SINE Alu -130 182 11 1959 145 0 10 chr9 38680748 38681038 -79181589 - AluSx SINE Alu -22 290 4 249 138 0 46 chr9 38681319 38681384 -79181243 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 684 170 0 0 chr9 38681395 38681501 -79181126 + AluSg/x SINE Alu 194 299 -11 601 194 29 0 chr9 38681787 38681962 -79180665 + (TA)n Simple_repeat Simple_repeat 1 180 0 552 191 35 0 chr9 38681974 38682147 -79180480 + (TA)n Simple_repeat Simple_repeat 1 179 0 256 225 100 0 chr9 38682160 38682240 -79180387 + L1MC4 LINE L1 6614 6701 -1341 280 92 53 13 chr9 38682252 38682328 -79180299 + (TA)n Simple_repeat Simple_repeat 2 80 0 2247 101 0 0 chr9 38682328 38682614 -79180013 - AluSx SINE Alu -26 286 1 379 283 109 33 chr9 38682843 38683027 -79179600 + MIR3 SINE MIR 2 199 -9 562 202 142 87 chr9 38683252 38683403 -79179224 + L1ME3A LINE L1 5904 6045 -125 1783 130 20 68 chr9 38683403 38683528 -79179099 + MER44D DNA MER2_type 1 130 -2361 2640 49 7 0 chr9 38683528 38683833 -79178794 + AluY SINE Alu 1 307 -4 1783 130 20 68 chr9 38683833 38684061 -79178566 + MER44D DNA MER2_type 130 607 -2 562 202 142 87 chr9 38684061 38684112 -79178515 + L1ME3A LINE L1 6045 6092 -78 2488 70 0 3 chr9 38684112 38684412 -79178215 - AluSp SINE Alu -14 299 1 562 202 142 87 chr9 38684412 38684461 -79178166 + L1ME3A LINE L1 6092 6170 0 1003 153 110 3 chr9 38684620 38684828 -79177799 + L1MB7 LINE L1 5953 6183 0 1870 156 16 29 chr9 38684967 38685281 -79177346 - AluJb SINE Alu -2 310 1 290 343 15 7 chr9 38685506 38685643 -79176984 - L2 LINE L2 -219 3053 2916 1345 155 49 9 chr9 38686454 38686680 -79175947 + MER46A DNA MER2_type 2 236 0 335 234 75 11 chr9 38687002 38687096 -79175531 + MER5B DNA MER1_type 7 106 -72 636 179 55 0 chr9 38687123 38687268 -79175359 + MIR SINE MIR 70 222 -40 1980 132 4 0 chr9 38687282 38687600 -79175027 - AluSg SINE Alu 0 319 1 2183 133 3 0 chr9 38687615 38687923 -79174704 - AluSx SINE Alu -2 310 2 1960 102 15 4 chr9 38687928 38688194 -79174433 - AluSx SINE Alu -25 287 19 311 237 151 69 chr9 38688206 38688451 -79174176 - L1M4 LINE L1 -2391 3755 3491 569 263 74 71 chr9 38688461 38688805 -79173822 + L2 LINE L2 2699 3045 -268 218 233 0 0 chr9 38688809 38688852 -79173775 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 1138 261 63 55 chr9 38688880 38689628 -79172999 - L2 LINE L2 -15 3298 2535 2117 115 7 0 chr9 38689629 38689924 -79172703 - AluSx SINE Alu -15 297 1 6267 44 12 16 chr9 38689960 38690715 -79171912 - SVA Other Other 0 1386 635 516 122 5 113 chr9 38690788 38691009 -79171618 - SVA Other Other -555 831 635 2759 88 38 90 chr9 38691038 38691538 -79171089 - SVA Other Other -520 866 393 417 227 31 10 chr9 38691703 38691800 -79170827 - L1ME1 LINE L1 -22 6144 6046 276 194 0 0 chr9 38691801 38691863 -79170764 - L2 LINE L2 -771 2543 2482 2269 113 3 0 chr9 38691917 38692218 -79170409 - AluSx SINE Alu -10 302 1 21 0 0 0 chr9 38692308 38692329 -79170298 + AT_rich Low_complexity Low_complexity 1 21 0 1234 236 137 34 chr9 38692354 38692769 -79169858 - L1MC4a LINE L1 -1865 5943 5486 1981 147 43 0 chr9 38692850 38693149 -79169478 - AluJo SINE Alu 0 312 1 1142 220 155 16 chr9 38693295 38693373 -79169254 - Charlie7 DNA MER1_type -1831 781 715 1745 180 14 10 chr9 38693373 38693668 -79168959 + AluJo SINE Alu 1 296 -16 2095 116 37 0 chr9 38693668 38693962 -79168665 + AluSx SINE Alu 5 309 -3 1142 220 155 16 chr9 38693962 38694309 -79168318 - Charlie7 DNA MER1_type -1896 716 296 385 174 51 61 chr9 38694344 38694442 -79168185 - Charlie7 DNA MER1_type -2429 183 87 2359 100 3 3 chr9 38694489 38694788 -79167839 - AluSx SINE Alu -13 299 1 698 247 12 6 chr9 38695542 38695708 -79166919 - MIR SINE MIR -95 167 1 184 316 0 41 chr9 38695930 38696028 -79166599 + MIR3 SINE MIR 114 207 -1 * 249 265 63 58 chr9 38696020 38696069 -79166558 - L3 LINE CR1 -752 825 778 2438 87 0 3 chr9 38696069 38696378 -79166249 - AluSg SINE Alu -2 308 1 249 265 63 58 chr9 38696378 38696517 -79166110 - L3 LINE CR1 -799 778 636 2265 114 0 19 chr9 38696518 38696834 -79165793 + AluSg SINE Alu 1 310 0 560 238 16 0 chr9 38696998 38697120 -79165507 - MIR SINE MIR -110 152 29 1000 218 38 0 chr9 38698556 38698767 -79163860 - MER20 DNA MER1_type 0 219 1 227 233 12 58 chr9 38698777 38698863 -79163764 + MIR SINE MIR 91 172 -90 427 252 9 9 chr9 38699497 38699608 -79163019 - MIR SINE MIR -6 256 146 1440 90 0 0 chr9 38699610 38699787 -79162840 - AluSg/x SINE Alu -9 301 125 531 258 0 8 chr9 38699787 38699911 -79162716 - MIR SINE MIR -111 151 29 253 267 27 0 chr9 38699917 38699992 -79162635 - MIR SINE MIR -133 129 53 330 267 23 0 chr9 38700512 38700598 -79162029 - MLT1C LTR MaLR 0 467 380 1869 117 94 0 chr9 38701178 38701443 -79161184 + AluSx SINE Alu 11 300 -12 4649 82 29 29 chr9 38701583 38702205 -79160422 + PABL_A LTR ERV1 1 625 -35 2396 93 3 3 chr9 38702205 38702516 -79160111 + AluSq SINE Alu 1 311 -2 4649 82 29 29 chr9 38702516 38702553 -79160074 + PABL_A LTR ERV1 624 660 0 324 0 0 0 chr9 38702583 38702619 -79160008 + (CA)n Simple_repeat Simple_repeat 2 37 0 2344 86 3 7 chr9 38703054 38703356 -79159271 - AluSp SINE Alu -12 301 1 2046 98 70 3 chr9 38703427 38703712 -79158915 - AluSq SINE Alu -9 304 1 2468 76 0 0 chr9 38703956 38704247 -79158380 - AluSc SINE Alu -18 291 1 2265 115 0 10 chr9 38704381 38704694 -79157933 - AluSg SINE Alu 0 310 1 2386 96 0 0 chr9 38705482 38705783 -79156844 - AluSx SINE Alu -11 301 1 198 0 0 0 chr9 38706281 38706303 -79156324 + (ATTG)n Simple_repeat Simple_repeat 3 24 0 1861 153 0 21 chr9 38706304 38706592 -79156035 - AluSx SINE Alu -30 282 1 2146 110 0 23 chr9 38706599 38706900 -79155727 - AluSx SINE Alu -9 303 10 2132 123 0 26 chr9 38706902 38707204 -79155423 - AluSx SINE Alu -18 294 1 22 0 0 0 chr9 38707211 38707233 -79155394 + AT_rich Low_complexity Low_complexity 1 22 0 850 216 6 6 chr9 38707233 38707395 -79155232 - AluJ SINE Alu -31 281 120 896 147 0 0 chr9 38707471 38707600 -79155027 - AluJ SINE Alu -183 129 1 1078 179 16 0 chr9 38707694 38707878 -79154749 - MER5A DNA MER1_type 0 189 3 311 181 291 16 chr9 38708981 38709108 -79153519 - MER5B DNA MER1_type 0 178 17 268 298 32 0 chr9 38709125 38709219 -79153408 + MIR SINE MIR 88 184 -78 5234 161 85 61 chr9 38709220 38710067 -79152560 - Charlie1a DNA MER1_type -1306 1455 630 2028 112 24 7 chr9 38710067 38710354 -79152273 + AluSx SINE Alu 1 292 -20 1662 100 5 0 chr9 38710356 38710566 -79152061 + AluSg SINE Alu 1 211 -99 5234 161 85 61 chr9 38710566 38710906 -79151721 - Charlie1a DNA MER1_type -2131 630 133 2122 135 0 0 chr9 38710906 38711202 -79151425 - AluSq SINE Alu -17 296 1 5234 161 85 61 chr9 38711202 38711336 -79151291 - Charlie1a DNA MER1_type -2628 133 4 2202 104 28 0 chr9 38711437 38711725 -79150902 - AluSg SINE Alu -14 296 1 611 247 156 68 chr9 38711803 38711860 -79150767 - MLT1H LTR MaLR -8 541 490 2396 72 7 13 chr9 38711860 38712166 -79150461 + AluSp SINE Alu 1 304 -9 611 247 156 68 chr9 38712166 38712367 -79150260 - MLT1H LTR MaLR -59 490 308 882 31 0 23 chr9 38712367 38712496 -79150131 + (TTTC)n Simple_repeat Simple_repeat 3 128 0 2127 80 15 0 chr9 38712496 38712770 -79149857 - AluY SINE Alu -33 278 1 611 247 156 68 chr9 38712770 38712894 -79149733 - MLT1H LTR MaLR -240 309 123 1250 168 74 4 chr9 38712966 38713222 -79149405 - Charlie1 DNA MER1_type -205 2556 2283 2249 109 3 0 chr9 38713921 38714223 -79148404 - AluSp SINE Alu -10 303 1 756 187 11 53 chr9 38714361 38714548 -79148079 - MIR SINE MIR -35 227 49 22 0 0 0 chr9 38715488 38715510 -79147117 + AT_rich Low_complexity Low_complexity 1 22 0 748 187 8 8 chr9 38715788 38715922 -79146705 - MLT1A2 LTR MaLR -2 363 230 970 153 43 139 chr9 38715939 38716072 -79146555 - MLT1A2 LTR MaLR -98 276 183 1700 181 0 20 chr9 38716072 38716376 -79146251 - AluJo SINE Alu -2 310 13 970 153 43 139 chr9 38716376 38716523 -79146104 - MLT1A2 LTR MaLR -191 183 23 371 319 101 44 chr9 38716565 38716863 -79145764 + L3 LINE CR1 982 1296 -281 275 310 60 17 chr9 38716957 38717073 -79145554 - MIR SINE MIR -58 150 30 2430 82 3 0 chr9 38717241 38717545 -79145082 - AluSp SINE Alu -8 305 1 2337 120 0 0 chr9 38718057 38718366 -79144261 - AluSx SINE Alu -2 310 2 2459 88 0 0 chr9 38718739 38719044 -79143583 + AluSq SINE Alu 1 305 -8 2605 69 0 0 chr9 38719291 38719597 -79143030 + AluY SINE Alu 1 306 -5 387 0 0 0 chr9 38719848 38719891 -79142736 + (TG)n Simple_repeat Simple_repeat 2 44 0 489 295 111 9 chr9 38770723 38770940 -79091687 + L2 LINE L2 3074 3312 -1 279 187 67 13 chr9 38771117 38771192 -79091435 + L2 LINE L2 3194 3272 0 2230 64 36 0 chr9 38771684 38771964 -79090663 - AluSq SINE Alu -22 291 2 661 138 8 8 chr9 38772077 38772200 -79090427 + CT-rich Low_complexity Low_complexity 4 126 0 289 225 28 0 chr9 38772210 38772281 -79090346 - MER39 LTR ERV1 -92 615 543 254 270 193 51 chr9 38772514 38772788 -79089839 - L2 LINE L2 -350 2964 2652 255 264 46 75 chr9 38773414 38773588 -79089039 - MER104 DNA Tc2 -1 179 11 1036 237 28 0 chr9 38774752 38775001 -79087626 + MIR SINE MIR 3 258 -4 240 290 118 0 chr9 38775015 38775108 -79087519 + MIR SINE MIR 45 148 -60 227 268 158 0 chr9 38776045 38776127 -79086500 - MIR SINE MIR -110 152 58 309 178 59 79 chr9 38776451 38776552 -79086075 + MIR SINE MIR 81 179 -83 374 296 30 39 chr9 38777197 38777400 -79085227 - LTR67 LTR ERVL 0 557 357 469 272 22 11 chr9 38778342 38778522 -79084105 + MIR SINE MIR 66 247 -15 254 267 209 0 chr9 38778738 38778843 -79083784 - MER5B DNA MER1_type 0 178 52 484 143 20 0 chr9 38778844 38778942 -79083685 + (TCTA)n Simple_repeat Simple_repeat 1 100 0 5738 68 0 1 chr9 38779507 38780227 -79082400 - L1PA7 LINE L1 -1 6153 5435 793 218 124 0 chr9 38781598 38781791 -79080836 - MIR SINE MIR -26 236 20 210 326 83 21 chr9 38782083 38782227 -79080400 + L2 LINE L2 2826 2978 -294 359 247 96 14 chr9 38782333 38782479 -79080148 - L1ME4a LINE L1 0 6121 5964 3197 35 0 30 chr9 38782586 38782966 -79079661 - L1PA3 LINE L1 0 6155 5786 2885 13 0 0 chr9 38782966 38783274 -79079353 - AluYb8 SINE Alu -10 308 1 3197 35 0 30 chr9 38783274 38783295 -79079332 - L1PA3 LINE L1 -369 5786 5766 1016 153 0 41 chr9 38783335 38783505 -79079122 - AluJb SINE Alu -14 298 136 183 42 0 0 chr9 38783918 38783942 -79078685 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 708 317 40 38 chr9 38784638 38785275 -79077352 - L2 LINE L2 0 3313 2677 1876 161 6 6 chr9 38788740 38789051 -79073576 + AluJb SINE Alu 1 311 -1 795 274 5 0 chr9 38789190 38789398 -79073229 + MIR SINE MIR 43 251 -11 1448 191 98 56 chr9 38789412 38789820 -79072807 - MLT1C LTR MaLR -7 460 36 662 318 139 24 chr9 38789833 38790213 -79072414 - MLT1K LTR MaLR -158 430 7 447 293 57 25 chr9 38790253 38790533 -79072094 + L3 LINE CR1 1245 1533 -44 559 214 209 16 chr9 38790533 38790592 -79072035 + MER112 DNA MER1_type 1 47 -213 279 0 0 0 chr9 38790592 38790623 -79072004 + (CA)n Simple_repeat Simple_repeat 2 32 0 559 214 209 16 chr9 38790623 38790745 -79071882 + MER112 DNA MER1_type 47 217 -43 248 233 17 0 chr9 38790752 38790812 -79071815 + L3 LINE CR1 1516 1576 -1 360 0 0 0 chr9 38791377 38791417 -79071210 + (TG)n Simple_repeat Simple_repeat 1 40 0 232 235 0 0 chr9 38791471 38791522 -79071105 + (TGGA)n Simple_repeat Simple_repeat 3 53 0 1539 207 77 12 chr9 38791540 38791955 -79070672 - L2 LINE L2 0 3313 2872 577 182 9 0 chr9 38791955 38792065 -79070562 - LTR16A LTR ERVL -19 431 321 774 296 5 9 chr9 38792072 38792295 -79070332 - LTR16A LTR ERVL -93 357 136 1096 237 180 7 chr9 38792410 38792827 -79069800 - L2 LINE L2 -511 2803 2315 407 248 113 32 chr9 38794307 38794443 -79068184 + MIR SINE MIR 16 163 -66 180 0 0 0 chr9 38795159 38795179 -79067448 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1869 153 25 3 chr9 38795187 38795469 -79067158 - AluJo SINE Alu -24 288 1 292 193 36 36 chr9 38795469 38795552 -79067075 - L1MA10 LINE L1 -42 6292 6210 303 206 14 41 chr9 38795904 38795977 -79066650 + L2 LINE L2 3242 3312 -1 2063 136 10 3 chr9 38796750 38797045 -79065582 + AluSx SINE Alu 1 297 -15 23 33 0 0 chr9 38797277 38797307 -79065320 + AT_rich Low_complexity Low_complexity 1 30 0 186 194 0 0 chr9 38799918 38799954 -79062673 - L2 LINE L2 0 3313 3278 1975 157 3 3 chr9 38800140 38800452 -79062175 - AluJo SINE Alu 0 312 1 4525 150 58 35 chr9 38800656 38800760 -79061867 - L1MB7 LINE L1 0 6184 6084 2156 135 0 3 chr9 38800760 38801064 -79061563 + AluSx SINE Alu 1 303 -9 4525 150 58 35 chr9 38801064 38801994 -79060633 - L1MB7 LINE L1 -100 6084 5127 2002 207 54 63 chr9 38802335 38802839 -79059788 - L1ME1 LINE L1 -5 6230 5730 2673 42 0 3 chr9 38802839 38803145 -79059482 - AluY SINE Alu -6 305 1 2002 207 54 63 chr9 38803145 38803230 -79059397 - L1ME1 LINE L1 -505 5730 5646 2218 119 0 3 chr9 38803253 38803563 -79059064 - AluSx SINE Alu -3 309 1 1951 232 48 9 chr9 38803663 38804210 -79058417 - L1ME1 LINE L1 -1742 4473 3906 302 326 100 3 chr9 38804198 38804508 -79058119 - L1ME1 LINE L1 -4130 2266 1927 * 1219 249 82 50 chr9 38804560 38805300 -79057327 - L1ME1 LINE L1 -4576 1820 1057 528 247 49 37 chr9 38805376 38805538 -79057089 - FAM SINE Alu -21 164 1 230 253 103 66 chr9 38805546 38805819 -79056808 - L1ME1 LINE L1 -5329 1067 785 4186 82 26 0 chr9 38806352 38806926 -79055701 - L1PB2 LINE L1 -2 6149 5561 286 221 0 133 chr9 38806989 38807102 -79055525 + MER112 DNA MER1_type 150 247 -13 481 377 9 16 chr9 38807141 38807457 -79055170 - L2 LINE L2 -788 2526 2213 2298 83 22 26 chr9 38807593 38807905 -79054722 - AluSx SINE Alu -1 311 1 219 257 178 30 chr9 38808207 38808308 -79054319 + L3 LINE CR1 1184 1299 -278 287 68 164 96 chr9 38808315 38808388 -79054239 - MLT2A1 LTR ERVL 0 453 367 27 81 0 0 chr9 38808389 38808451 -79054176 + AT_rich Low_complexity Low_complexity 1 62 0 2983 75 0 8 chr9 38808465 38808852 -79053775 - MLT2A1 LTR ERVL -60 384 1 215 313 62 52 chr9 38808879 38808975 -79053652 + L2 LINE L2 3168 3264 -8 305 307 73 36 chr9 38808999 38809136 -79053491 + L3 LINE CR1 1374 1515 -62 234 222 0 0 chr9 38809266 38809311 -79053316 - L2 LINE L2 -11 3261 3217 865 189 107 19 chr9 38809324 38809530 -79053097 + MER58A DNA MER1_type 1 224 0 551 236 92 23 chr9 38809558 38809732 -79052895 - MIR SINE MIR -57 205 20 208 264 14 135 chr9 38810450 38810598 -79052029 + MIR3 SINE MIR 15 144 -64 195 320 75 21 chr9 38812136 38812258 -79050369 + MIR SINE MIR 5 138 -70 6813 166 50 26 chr9 38812396 38813374 -79049253 + L1MC3 LINE L1 3824 4776 -1370 1528 228 26 91 chr9 38813374 38813914 -79048713 - MLT1D LTR MaLR 0 505 1 6813 166 50 26 chr9 38813914 38814527 -79048100 + L1MC3 LINE L1 4776 5372 -774 213 39 0 0 chr9 38814527 38814553 -79048074 + (CA)n Simple_repeat Simple_repeat 2 27 0 6813 166 50 26 chr9 38814553 38815044 -79047583 + L1MC3 LINE L1 5372 5283 -863 2290 129 0 0 chr9 38815044 38815355 -79047272 + AluSx SINE Alu 1 311 -1 6813 166 50 26 chr9 38815355 38815481 -79047146 + L1MC3 LINE L1 5282 5403 -743 672 160 0 0 chr9 38815522 38815628 -79046999 - AluSq/x SINE Alu -205 107 2 700 154 0 20 chr9 38815628 38815777 -79046850 + CT-rich Low_complexity Low_complexity 3 148 0 240 35 0 0 chr9 38815853 38815882 -79046745 + (TCC)n Simple_repeat Simple_repeat 2 30 0 707 200 0 0 chr9 38815883 38815998 -79046629 - FLAM_A SINE Alu -18 115 1 471 48 0 0 chr9 38816550 38816612 -79046015 + L1PA13 LINE L1 6099 6160 -3 2194 111 24 0 chr9 38816900 38817198 -79045429 + AluSq SINE Alu 1 305 -8 1914 150 3 7 chr9 38817236 38817536 -79045091 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr9 38817673 38817697 -79044930 + AT_rich Low_complexity Low_complexity 1 24 0 306 0 0 0 chr9 38818471 38818505 -79044122 + (CA)n Simple_repeat Simple_repeat 2 35 0 671 328 61 16 chr9 38818527 38818954 -79043673 + L3 LINE CR1 1131 1576 -1 2009 101 78 31 chr9 38819644 38820002 -79042625 - THE1C LTR MaLR 0 375 1 10203 110 7 56 chr9 38820002 38821661 -79040966 - THE1C-int LTR MaLR 0 1580 3 1832 139 75 33 chr9 38821663 38822023 -79040604 - THE1C LTR MaLR 0 375 1 507 298 182 27 chr9 38822171 38822597 -79040030 + L2 LINE L2 1889 2420 -894 591 235 15 8 chr9 38822597 38822729 -79039898 - MER94 DNA DNA -1 133 1 507 298 182 27 chr9 38822729 38822852 -79039775 + L2 LINE L2 2420 2523 -791 345 246 98 16 chr9 38822828 38822950 -79039677 + L2 LINE L2 3136 3267 -5 * 430 228 165 32 chr9 38822981 38823139 -79039488 - MIR3 SINE MIR -7 201 23 354 98 0 0 chr9 38823208 38823259 -79039368 + (TG)n Simple_repeat Simple_repeat 2 52 0 1880 141 3 41 chr9 38823372 38823691 -79038936 - AluJo SINE Alu -5 307 1 191 351 69 23 chr9 38823989 38824120 -79038507 + MIR3 SINE MIR 66 202 -6 1266 142 83 0 chr9 38824165 38824383 -79038244 + MER46A DNA MER2_type 1 236 0 351 78 0 0 chr9 38825342 38825393 -79037234 + (TG)n Simple_repeat Simple_repeat 1 51 0 593 238 93 7 chr9 38825703 38825854 -79036773 - MER5B DNA MER1_type 0 178 15 2156 100 0 0 chr9 38826459 38826750 -79035877 - AluSg SINE Alu -19 291 1 3573 152 2 5 chr9 38826759 38827331 -79035296 - L1PA16 LINE L1 -16 6150 5581 383 301 87 33 chr9 38827586 38827769 -79034858 - MLT1L LTR MaLR -114 501 309 2157 126 32 59 chr9 38827774 38827983 -79034644 - THE1B LTR MaLR 0 364 168 1991 107 35 3 chr9 38827983 38828272 -79034355 + AluSq SINE Alu 1 298 -15 2157 126 32 59 chr9 38828272 38828436 -79034191 - THE1B LTR MaLR -196 168 1 183 321 0 0 chr9 38828648 38828704 -79033923 + MIR SINE MIR 56 111 -151 434 272 0 0 chr9 38828797 38828911 -79033716 - MER103 DNA DNA -51 115 2 618 291 52 14 chr9 38829176 38829389 -79033238 + L2 LINE L2 3090 3310 -3 201 39 0 0 chr9 38829702 38829728 -79032899 + (GA)n Simple_repeat Simple_repeat 2 27 0 1914 121 3 7 chr9 38829873 38830181 -79032446 + AluSq SINE Alu 2 308 0 193 259 56 83 chr9 38831061 38831169 -79031458 - MIR SINE MIR -66 196 92 2249 111 0 0 chr9 38831297 38831603 -79031024 + AluSx SINE Alu 1 306 -6 420 310 47 23 chr9 38831614 38831785 -79030842 - MER5B DNA MER1_type -3 175 1 284 274 26 71 chr9 38831831 38831944 -79030683 + MIR3 SINE MIR 88 195 -13 630 263 116 54 chr9 38832040 38832310 -79030317 + MLT1L LTR MaLR 5 305 -283 313 141 114 54 chr9 38832444 38832551 -79030076 - MLT1I LTR MaLR -3 406 316 1602 159 63 61 chr9 38832575 38832953 -79029674 + MLT1B LTR MaLR 11 389 -1 710 264 112 25 chr9 38832953 38833226 -79029401 - MLT1J2 LTR MaLR -137 313 17 324 352 22 6 chr9 38833231 38833410 -79029217 + MLT1L LTR MaLR 434 615 0 193 234 85 0 chr9 38833704 38833751 -79028876 + L2 LINE L2 3262 3312 -1 2035 115 3 16 chr9 38833820 38834132 -79028495 - AluSx SINE Alu -4 308 1 3790 164 6 3 chr9 38834693 38835333 -79027294 - L1MB4 LINE L1 0 6180 5539 283 227 93 0 chr9 38836745 38836820 -79025807 - L2 LINE L2 -52 3261 3180 406 231 46 0 chr9 38836857 38836965 -79025662 - MER20B DNA MER1_type -157 626 514 337 252 149 0 chr9 38837079 38837186 -79025441 - MER20B DNA MER1_type -267 516 394 210 71 0 0 chr9 38837216 38837244 -79025383 + (A)n Simple_repeat Simple_repeat 1 28 0 644 215 15 0 chr9 38837248 38837378 -79025249 + FLAM_A SINE Alu 1 132 -1 450 276 83 21 chr9 38837738 38837883 -79024744 + MIR3 SINE MIR 30 183 -25 364 272 68 49 chr9 38837947 38838271 -79024356 + L1ME4a LINE L1 5711 6040 -81 2039 149 18 37 chr9 38838531 38838913 -79023714 - THE1C LTR MaLR 0 375 1 525 316 48 0 chr9 38839003 38839171 -79023456 - MIR SINE MIR -74 188 13 27 0 0 0 chr9 38840296 38840323 -79022304 + AT_rich Low_complexity Low_complexity 1 27 0 191 289 0 0 chr9 38840453 38840498 -79022129 - L2 LINE L2 -17 3296 3252 269 225 25 62 chr9 38840576 38840656 -79021971 - MIR3 SINE MIR -50 158 82 2531 182 80 2 chr9 38840904 38841480 -79021147 - Charlie2 DNA MER1_type -11 2851 2231 480 232 71 0 chr9 38841490 38841602 -79021025 - MER91C DNA MER1_type -6 134 15 790 252 51 54 chr9 38841606 38841939 -79020688 - Charlie2 DNA MER1_type -2403 379 48 659 184 95 17 chr9 38842198 38842377 -79020250 - MIR SINE MIR -34 228 36 2233 104 0 0 chr9 38842440 38842747 -79019880 + AluSc SINE Alu 1 307 -2 327 270 88 15 chr9 38842771 38842831 -79019796 - MIR SINE MIR -13 249 195 1810 133 0 14 chr9 38842831 38842967 -79019660 + AluSx SINE Alu 1 137 -176 2309 99 0 0 chr9 38842967 38843271 -79019356 + AluSx SINE Alu 1 304 -8 1810 133 0 14 chr9 38843271 38843451 -79019176 + AluSx SINE Alu 137 313 0 327 270 88 15 chr9 38843451 38843526 -79019101 - MIR SINE MIR -67 195 103 239 306 31 10 chr9 38843769 38843867 -79018760 - L2 LINE L2 -5 3267 3168 470 286 32 0 chr9 38844308 38844434 -79018193 + MIR3 SINE MIR 71 200 -8 390 318 65 12 chr9 38845293 38845463 -79017164 + MIR SINE MIR 7 185 -77 351 190 13 25 chr9 38845475 38845554 -79017073 - L2 LINE L2 -7 3306 3229 394 263 230 0 chr9 38846081 38846233 -79016394 - MER5A DNA MER1_type -2 187 1 532 162 121 0 chr9 38846782 38846881 -79015746 - MER81 DNA DNA -3 111 1 485 291 82 19 chr9 38846931 38847137 -79015490 + MIR SINE MIR 13 231 -31 692 206 23 34 chr9 38847183 38847358 -79015269 - MER104 DNA Tc2 -1 179 7 206 360 11 34 chr9 38847358 38847447 -79015180 - L2 LINE L2 -42 3230 3144 277 228 117 28 chr9 38848575 38848720 -79013907 - L1ME4a LINE L1 -1 6120 5963 492 178 22 0 chr9 38848724 38848814 -79013813 - Zaphod DNA AcHobo 0 4031 3940 * 2974 233 82 27 chr9 38848792 38849641 -79012986 - Zaphod DNA AcHobo -3126 905 10 303 140 0 0 chr9 38849648 38849698 -79012929 + (TG)n Simple_repeat Simple_repeat 2 51 0 40 0 0 0 chr9 38849711 38849751 -79012876 + AT_rich Low_complexity Low_complexity 1 40 0 334 262 31 99 chr9 38849913 38849979 -79012648 - L1ME4a LINE L1 -280 5841 5772 2009 122 3 3 chr9 38849979 38850275 -79012352 - AluSx SINE Alu -16 296 1 334 262 31 99 chr9 38850275 38850399 -79012228 - L1ME4a LINE L1 -349 5772 5664 275 242 27 3 chr9 38850593 38850688 -79011939 + MIR SINE MIR 74 170 -62 254 270 27 14 chr9 38851061 38851135 -79011492 - L2 LINE L2 0 3272 3198 1234 224 174 10 chr9 38851316 38851713 -79010914 + MLT1C LTR MaLR 6 467 0 240 59 0 0 chr9 38851765 38851799 -79010828 + (TG)n Simple_repeat Simple_repeat 2 35 0 357 242 24 81 chr9 38851808 38851932 -79010695 + MIR3 SINE MIR 42 158 -50 1450 243 99 34 chr9 38852352 38852818 -79009809 - MLT1D LTR MaLR 0 505 10 488 264 36 48 chr9 38853193 38853296 -79009331 - MIR SINE MIR -72 190 88 3098 90 9 29 chr9 38853296 38853697 -79008930 - MER57B LTR ERV1 0 434 41 2212 116 0 3 chr9 38853697 38854008 -79008619 + AluSx SINE Alu 1 310 -2 3098 90 9 29 chr9 38854008 38854049 -79008578 - MER57B LTR ERV1 -393 41 1 488 264 36 48 chr9 38854049 38854112 -79008515 - MIR SINE MIR -174 88 26 236 216 189 18 chr9 38854167 38854278 -79008349 + MIR SINE MIR 23 152 -56 377 277 96 31 chr9 38855034 38855294 -79007333 - L1ME4a LINE L1 -204 5917 5641 21 0 0 0 chr9 38855294 38855315 -79007312 + AT_rich Low_complexity Low_complexity 1 21 0 1127 139 77 39 chr9 38855332 38855540 -79007087 + AluSg SINE Alu 5 220 -90 1251 167 8 33 chr9 38855642 38855887 -79006740 - AluJo SINE Alu -52 260 22 545 234 132 38 chr9 38855913 38856148 -79006479 - L1ME4a LINE L1 -487 5634 5378 309 353 13 20 chr9 38856253 38856403 -79006224 - MIR3 SINE MIR -59 149 1 292 365 28 14 chr9 38856856 38857001 -79005626 + MIR3 SINE MIR 33 179 -29 2068 122 0 3 chr9 38857201 38857505 -79005122 - AluSg SINE Alu -7 303 1 2024 131 3 0 chr9 38857517 38857808 -79004819 - AluSx SINE Alu -20 292 1 198 71 0 0 chr9 38858464 38858492 -79004135 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 291 309 40 0 chr9 38859129 38859255 -79003372 - L1ME4a LINE L1 -5 6116 5986 248 261 115 13 chr9 38859319 38859476 -79003151 - L1ME4a LINE L1 -238 5883 5711 797 167 0 0 chr9 38859483 38859603 -79003024 - AluJb SINE Alu -191 121 2 1463 153 83 63 chr9 38859604 38859905 -79002722 - AluJo SINE Alu -5 307 1 226 236 19 137 chr9 38859910 38859932 -79002695 - L1ME4a LINE L1 -383 5738 5715 334 237 13 0 chr9 38859932 38860008 -79002619 + MER116 DNA Mariner 1 77 -3 226 236 19 137 chr9 38860008 38860146 -79002481 - L1ME4a LINE L1 -406 5715 5597 228 281 78 102 chr9 38862408 38862575 -79000052 + L2 LINE L2 3107 3269 -3 258 32 0 0 chr9 38862870 38862901 -78999726 + (CA)n Simple_repeat Simple_repeat 2 32 0 271 305 169 23 chr9 38863124 38863301 -78999326 - L3 LINE CR1 -1258 319 117 296 243 21 86 chr9 38863429 38863569 -78999058 + MIR SINE MIR 92 222 -40 241 309 71 12 chr9 38863630 38863714 -78998913 - L2 LINE L2 -51 3221 3133 181 213 21 21 chr9 38865048 38865095 -78997532 + L2 LINE L2 3226 3272 0 292 286 68 62 chr9 38865304 38865496 -78997131 - L3 LINE CR1 -84 1493 1301 221 322 11 11 chr9 38866583 38866673 -78995954 - L2 LINE L2 -24 3248 3159 190 274 0 0 chr9 38866719 38866770 -78995857 + MIR SINE MIR 85 135 -73 258 250 15 15 chr9 38866897 38866965 -78995662 - L2 LINE L2 -1 3271 3204 201 220 154 0 chr9 38867458 38867549 -78995078 - L2 LINE L2 -225 3088 2984 392 178 29 5 chr9 38867945 38868039 -78994588 + MIR SINE MIR 71 166 -42 876 242 5 5 chr9 38868699 38868885 -78993742 + MIR SINE MIR 20 205 -57 551 239 65 107 chr9 38868997 38869180 -78993447 + MLT1K LTR MaLR 217 377 -211 2286 129 0 0 chr9 38869180 38869490 -78993137 + AluSx SINE Alu 1 310 -2 551 239 65 107 chr9 38869490 38869691 -78992936 + MLT1K LTR MaLR 377 585 -3 186 293 0 0 chr9 38869700 38869741 -78992886 + L2 LINE L2 3214 3254 -18 232 163 41 0 chr9 38870686 38870735 -78991892 - MIR SINE MIR -110 152 102 491 271 8 0 chr9 38872059 38872181 -78990446 + MIR SINE MIR 31 153 -109 481 246 34 0 chr9 38872181 38872299 -78990328 + MER94 DNA DNA 1 122 -12 218 161 81 0 chr9 38872308 38872370 -78990257 + MIR SINE MIR 141 207 -55 4240 135 25 73 chr9 38874187 38875054 -78987573 + L1MC1 LINE L1 5508 6333 0 323 307 54 17 chr9 38875067 38875308 -78987319 - L1ME4a LINE L1 -228 5893 5644 520 219 0 42 chr9 38875654 38875773 -78986854 - MER81 DNA DNA 0 114 1 393 340 122 26 chr9 38876181 38876425 -78986202 + MIR SINE MIR 2 262 0 376 293 55 103 chr9 38876504 38876958 -78985669 + L2 LINE L2 2830 3261 -11 203 335 77 16 chr9 38877017 38877199 -78985428 - L2 LINE L2 -209 3063 2871 809 141 41 18 chr9 38877351 38877521 -78985106 - MER53 DNA DNA -15 174 1 303 287 55 39 chr9 38878261 38878397 -78984230 - MIR SINE MIR -63 145 9 360 224 76 6 chr9 38878926 38879041 -78983586 - MLT1J1 LTR MaLR -1 445 330 352 136 30 0 chr9 38879041 38879107 -78983520 - MER53 DNA DNA 0 189 122 341 262 0 0 chr9 38879197 38879281 -78983346 - MER53 DNA DNA -105 84 1 756 247 67 25 chr9 38879288 38879571 -78983056 - MLT1J2 LTR MaLR -118 332 38 387 0 0 0 chr9 38879583 38879626 -78983001 + (CA)n Simple_repeat Simple_repeat 2 44 0 1487 209 48 18 chr9 38879890 38880220 -78982407 + MLT1A1 LTR MaLR 26 365 0 440 287 159 0 chr9 38880259 38880416 -78982211 + MIR SINE MIR 68 249 -13 740 236 20 35 chr9 38882176 38882375 -78980252 - MIR SINE MIR -16 246 51 195 310 100 0 chr9 38882563 38882663 -78979964 - L2 LINE L2 -1 3271 3162 215 227 0 15 chr9 38882782 38882848 -78979779 - L2 LINE L2 -293 2979 2915 511 301 88 5 chr9 38883369 38883562 -78979065 + MIR SINE MIR 37 245 -17 2429 89 13 0 chr9 38883640 38883943 -78978684 + AluSq SINE Alu 2 308 -5 289 186 68 0 chr9 38885017 38885076 -78977551 - MIR SINE MIR -116 146 84 256 147 58 32 chr9 38885284 38885440 -78977187 + (TG)n Simple_repeat Simple_repeat 2 161 0 511 88 59 24 chr9 38885469 38885639 -78976988 + (TG)n Simple_repeat Simple_repeat 1 176 0 254 106 62 26 chr9 38885653 38885766 -78976861 + (TG)n Simple_repeat Simple_repeat 1 117 0 583 47 76 23 chr9 38885780 38885951 -78976676 + (TG)n Simple_repeat Simple_repeat 1 180 0 219 112 64 32 chr9 38885982 38886107 -78976520 + (TG)n Simple_repeat Simple_repeat 1 129 0 542 357 80 15 chr9 38886411 38886736 -78975891 - L2 LINE L2 -754 2560 2215 180 271 42 0 chr9 38887015 38887063 -78975564 + L3b LINE CR1 1517 1566 -17 360 258 11 0 chr9 38888053 38888142 -78974485 - MER117 DNA MER1_type -107 90 1 2293 106 3 0 chr9 38888298 38888590 -78974037 - AluSp SINE Alu -20 293 1 2186 145 0 0 chr9 38889599 38889910 -78972717 + AluSx SINE Alu 1 311 -1 1802 159 37 14 chr9 38891301 38891597 -78971030 + AluJb SINE Alu 1 303 -9 389 133 24 0 chr9 38891597 38891680 -78970947 + GA-rich Low_complexity Low_complexity 1 85 0 519 17 0 0 chr9 38891842 38891902 -78970725 + (CA)n Simple_repeat Simple_repeat 1 60 0 796 182 63 0 chr9 38892023 38892182 -78970445 + MER3 DNA MER1_type 1 122 -87 533 267 148 18 chr9 38892673 38892890 -78969737 - MIR SINE MIR -16 246 2 336 260 126 0 chr9 38894678 38894805 -78967822 + MIR SINE MIR 45 187 -75 744 242 82 9 chr9 38894862 38895081 -78967546 + MIR SINE MIR 28 262 0 649 292 84 44 chr9 38895904 38896154 -78966473 - MLT1I LTR MaLR -1 408 149 676 228 42 50 chr9 38896332 38896492 -78966135 - MLT1I LTR MaLR -241 168 18 181 406 10 0 chr9 38896509 38896605 -78966022 + MIR SINE MIR 161 257 -5 214 188 42 0 chr9 38896634 38896682 -78965945 - MIR SINE MIR -123 139 90 501 264 42 0 chr9 38896883 38897027 -78965600 - MIR SINE MIR -77 185 36 203 79 26 0 chr9 38897211 38897249 -78965378 + (GA)n Simple_repeat Simple_repeat 1 39 0 345 200 114 19 chr9 38897449 38897554 -78965073 + MER91B DNA MER1_type 26 140 -50 1165 257 189 0 chr9 38897566 38897978 -78964649 + LTR33 LTR ERVL 25 514 -7 186 133 0 0 chr9 38899632 38899662 -78962965 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 453 220 167 13 chr9 38899798 38899957 -78962670 + MIR SINE MIR 63 244 -18 249 237 124 21 chr9 38901682 38901779 -78960848 - L2 LINE L2 -61 3211 3105 317 82 20 0 chr9 38901836 38901885 -78960742 + (TG)n Simple_repeat Simple_repeat 1 50 0 216 303 101 11 chr9 38902358 38902447 -78960180 + MIR SINE MIR 6 102 -160 819 247 109 39 chr9 38902458 38902741 -78959886 - MLT1I LTR MaLR 0 409 107 327 226 60 0 chr9 38902801 38902885 -78959742 + MIR SINE MIR 116 204 -58 303 193 23 34 chr9 38903541 38903629 -78958998 - MIR SINE MIR -10 252 166 671 253 142 4 chr9 38903763 38903988 -78958639 - MIR SINE MIR -5 257 2 516 313 34 57 chr9 38904014 38904311 -78958316 + L3 LINE CR1 1249 1538 -39 472 286 21 0 chr9 38905213 38905353 -78957274 + MIR3 SINE MIR 32 174 -34 355 226 150 15 chr9 38906167 38906300 -78956327 - MIR SINE MIR 0 262 112 857 150 9 141 chr9 38906449 38906587 -78956040 - MER5A DNA MER1_type -4 185 83 1447 144 15 0 chr9 38906587 38906850 -78955777 - L1MA2 LINE L1 0 6304 6038 857 150 9 141 chr9 38906850 38906924 -78955703 - MER5A DNA MER1_type -106 83 1 694 256 15 20 chr9 38906942 38907137 -78955490 + L2 LINE L2 3118 3311 -2 194 172 0 103 chr9 38907141 38907199 -78955428 - MIR SINE MIR -133 75 24 330 167 0 0 chr9 38907883 38907943 -78954684 + T-rich Low_complexity Low_complexity 1 60 0 635 260 72 27 chr9 38908309 38908532 -78954095 - MIR SINE MIR 0 262 30 249 309 102 21 chr9 38908588 38908730 -78953897 + MIR SINE MIR 31 182 -62 451 346 43 0 chr9 38908799 38908987 -78953640 - L3 LINE CR1 -237 1340 1145 283 252 184 0 chr9 38908979 38909082 -78953545 + MIR SINE MIR 107 228 -34 * 270 206 44 0 chr9 38909189 38909257 -78953370 - L1ME2 LINE L1 -11 6153 6083 3656 230 62 20 chr9 38909270 38911067 -78951560 - L1ME2 LINE L1 -153 6011 4132 529 344 26 33 chr9 38911285 38911558 -78951069 + MLT1I LTR MaLR 7 277 -132 546 260 32 0 chr9 38911704 38911858 -78950769 + MLT1I LTR MaLR 236 394 -15 389 300 72 65 chr9 38912953 38913243 -78949384 - L2 LINE L2 -86 3227 2936 311 301 91 38 chr9 38913312 38913603 -78949024 - L2 LINE L2 -177 3095 2712 708 278 79 59 chr9 38913947 38914353 -78948274 - MLT1K LTR MaLR -15 573 160 37 0 0 0 chr9 38914561 38914598 -78948029 + AT_rich Low_complexity Low_complexity 1 37 0 391 338 0 0 chr9 38914734 38914870 -78947757 + MIR SINE MIR 17 152 -56 243 320 40 13 chr9 38915161 38915311 -78947316 - L3 LINE CR1 -1 1576 1423 186 214 0 0 chr9 38915369 38915411 -78947216 - L2 LINE L2 -301 2971 2930 1514 152 7 82 chr9 38916021 38916324 -78946303 + AluJb SINE Alu 33 312 0 906 138 6 22 chr9 38916330 38916511 -78946116 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 668 156 25 33 chr9 38917141 38917263 -78945364 + FLAM_C SINE Alu 3 123 -20 357 192 51 45 chr9 38917855 38918011 -78944616 + (TCTCTG)n Simple_repeat Simple_repeat 5 161 0 222 279 32 26 chr9 38917944 38918098 -78944529 + CT-rich Low_complexity Low_complexity 6 160 0 * 203 59 0 29 chr9 38918107 38918141 -78944486 + (TC)n Simple_repeat Simple_repeat 1 33 0 218 247 82 0 chr9 38918818 38918903 -78943724 + MIR SINE MIR 56 147 -61 192 255 5 85 chr9 38919249 38919390 -78943237 + L2 LINE L2 2916 3040 -232 1149 240 92 45 chr9 38919694 38920186 -78942441 - LTR33 LTR ERVL -6 515 1 345 24 0 0 chr9 38921127 38921169 -78941458 + (CA)n Simple_repeat Simple_repeat 2 43 0 1102 274 97 32 chr9 38923026 38923501 -78939126 + MLT1J LTR MaLR 6 511 0 2070 118 0 13 chr9 38923790 38924103 -78938524 - AluSg SINE Alu -1 309 1 251 325 114 0 chr9 38924193 38924307 -78938320 - L3 LINE CR1 -36 1541 1415 301 362 8 8 chr9 38924536 38924663 -78937964 + L2 LINE L2 3145 3271 -1 523 299 16 27 chr9 38924956 38925143 -78937484 + MIR SINE MIR 23 207 -55 2013 239 71 2 chr9 38925474 38925938 -78936689 - MLT1E1 LTR MaLR -3 651 156 182 170 0 132 chr9 38926631 38926684 -78935943 + L2 LINE L2 3217 3262 -10 1143 226 50 27 chr9 38927021 38927322 -78935305 + MLT1J2 LTR MaLR 13 320 -130 253 167 21 0 chr9 38927357 38927405 -78935222 - MLT1E1 LTR MaLR -99 555 507 * 391 276 0 9 chr9 38927389 38927494 -78935133 + MLT1J2 LTR MaLR 347 450 0 719 226 0 0 chr9 38928157 38928290 -78934337 - FLAM_A SINE Alu 0 133 1 1942 149 117 3 chr9 38929019 38929369 -78933258 + MLT1B LTR MaLR 1 390 0 469 243 18 59 chr9 38930073 38930242 -78932385 + L2 LINE L2 2898 3059 -213 292 236 45 55 chr9 38930518 38930628 -78931999 - MIR SINE MIR -56 206 98 818 156 2 22 chr9 38931685 38931979 -78930648 + AluJo SINE Alu 5 246 -66 321 258 135 0 chr9 38931982 38932071 -78930556 + L2 LINE L2 3213 3313 0 205 178 0 0 chr9 38932918 38932963 -78929664 + T-rich Low_complexity Low_complexity 1 45 0 258 56 0 0 chr9 38933488 38933524 -78929103 + (TG)n Simple_repeat Simple_repeat 2 37 0 216 308 10 58 chr9 38935391 38935495 -78927132 + MIR3 SINE MIR 61 159 -49 182 295 82 0 chr9 38936290 38936351 -78926276 + MIR SINE MIR 120 185 -77 294 234 153 9 chr9 38937433 38937544 -78925083 + MIR3 SINE MIR 11 137 -71 387 269 0 37 chr9 38937888 38938022 -78924605 - MIR3 SINE MIR -78 130 2 190 239 0 0 chr9 38938739 38938785 -78923842 + MIR3 SINE MIR 147 192 -16 1060 248 0 0 chr9 38939915 38940137 -78922490 + MER58A DNA MER1_type 3 224 0 252 215 177 0 chr9 38940324 38940403 -78922224 - MIR SINE MIR -19 243 151 277 262 18 95 chr9 38940408 38940576 -78922051 + L2 LINE L2 2906 3060 -212 180 77 0 0 chr9 38940799 38940825 -78921802 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 717 161 0 0 chr9 38942077 38942226 -78920401 + (TG)n Simple_repeat Simple_repeat 2 150 0 197 214 0 0 chr9 38942555 38942597 -78920030 - MIR SINE MIR -109 153 112 1098 271 63 48 chr9 38942642 38943185 -78919442 + LTR67 LTR ERVL 7 557 0 767 269 29 29 chr9 38943356 38943601 -78919026 + MIR SINE MIR 6 250 -12 464 303 46 7 chr9 38944021 38944173 -78918454 - MER91A DNA MER1_type -4 192 35 349 223 250 0 chr9 38945442 38945554 -78917073 - MER117 DNA MER1_type -47 150 11 193 156 0 0 chr9 38946301 38946333 -78916294 - MIR SINE MIR -63 145 114 288 0 0 0 chr9 38947421 38947453 -78915174 + (CA)n Simple_repeat Simple_repeat 1 32 0 181 239 22 0 chr9 38947828 38947874 -78914753 + L2 LINE L2 3012 3058 -214 796 210 85 28 chr9 38948335 38948583 -78914044 + L2 LINE L2 3039 3300 -13 186 43 0 0 chr9 38948583 38948606 -78914021 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 215 298 145 32 chr9 38949071 38949195 -78913432 - L2 LINE L2 -214 3058 2921 411 282 32 0 chr9 38950119 38950243 -78912384 + MIR SINE MIR 70 197 -65 544 301 13 13 chr9 38950989 38951203 -78911424 + MIR SINE MIR 5 216 -46 314 306 0 24 chr9 38951358 38951482 -78911145 - MIR3 SINE MIR 0 208 88 189 308 31 0 chr9 38951894 38951959 -78910668 - MIR SINE MIR -112 96 30 386 319 43 57 chr9 38952054 38952264 -78910363 - L1MC4 LINE L1 -7 8035 7829 465 216 8 71 chr9 38952297 38952457 -78910170 - L1ME2 LINE L1 0 6162 6013 273 314 7 29 chr9 38953379 38953519 -78909108 + (CATATA)n Simple_repeat Simple_repeat 4 140 0 399 245 65 79 chr9 38953519 38953658 -78908969 + MIR3 SINE MIR 49 185 -23 246 245 85 11 chr9 38954007 38954101 -78908526 + MIR SINE MIR 39 139 -123 269 163 0 0 chr9 38954401 38954450 -78908177 + Charlie8 DNA MER1_type 1380 1428 -989 356 268 57 128 chr9 38954826 38955210 -78907417 + L2 LINE L2 2873 3229 -43 1724 111 0 0 chr9 38955599 38955843 -78906784 - AluY SINE Alu -4 307 64 243 269 187 23 chr9 38957055 38957226 -78905401 + MIR SINE MIR 14 212 -50 247 289 16 33 chr9 38958240 38958361 -78904266 - L2 LINE L2 -53 3219 3101 485 218 16 129 chr9 38958781 38958822 -78903805 + MER5B DNA MER1_type 1 45 -133 2271 88 0 3 chr9 38958822 38959117 -78903510 + AluY SINE Alu 1 294 -17 2198 102 7 0 chr9 38959126 38959420 -78903207 + AluSg SINE Alu 1 296 -14 485 218 16 129 chr9 38959420 38959561 -78903066 + MER5B DNA MER1_type 53 171 -7 228 67 0 0 chr9 38960097 38960127 -78902500 + (GGGGA)n Simple_repeat Simple_repeat 3 32 0 251 185 0 37 chr9 38960281 38960335 -78902292 - L2 LINE L2 0 3313 3262 1535 244 83 19 chr9 38960356 38961002 -78901625 - L2 LINE L2 0 3313 2608 466 329 0 0 chr9 38961995 38962138 -78900489 + MER91A DNA MER1_type 1 143 -53 778 121 7 29 chr9 38962419 38962559 -78900068 - FRAM SINE Alu -39 137 1 224 288 56 56 chr9 38962613 38962738 -78899889 - MIR SINE MIR -43 165 41 308 329 119 24 chr9 38962749 38962959 -78899668 + MIR SINE MIR 17 246 -16 2085 107 0 0 chr9 38962961 38963241 -78899386 + AluSg SINE Alu 1 280 -30 181 292 0 0 chr9 38964590 38964638 -78897989 + L2 LINE L2 3225 3272 0 311 247 0 35 chr9 38964643 38964728 -78897899 + GA-rich Low_complexity Low_complexity 4 85 0 211 283 221 0 chr9 38965844 38965957 -78896670 + MIR3 SINE MIR 61 198 -10 251 222 0 14 chr9 38966822 38966894 -78895733 + CT-rich Low_complexity Low_complexity 1 71 0 180 255 0 39 chr9 38968419 38968470 -78894157 + L2 LINE L2 2927 2975 -338 218 244 78 44 chr9 38968802 38968892 -78893735 + MIR SINE MIR 162 254 -8 1383 63 0 0 chr9 38968921 38969180 -78893447 + (TGGA)n Simple_repeat Simple_repeat 1 259 0 288 273 81 87 chr9 38971399 38971571 -78891056 - MIR3 SINE MIR -6 202 32 494 278 120 102 chr9 38971920 38972370 -78890257 + L2 LINE L2 2815 3272 0 298 346 46 20 chr9 38972764 38972917 -78889710 - L3 LINE CR1 -149 1428 1272 186 228 70 0 chr9 38972924 38972981 -78889646 - MIR SINE MIR -87 121 61 951 221 77 17 chr9 38973873 38974108 -78888519 - MIR SINE MIR 0 262 14 368 346 10 0 chr9 38974279 38974383 -78888244 - L2 LINE L2 -9 3263 3159 1544 232 93 27 chr9 38974527 38975001 -78887626 + MLT1D LTR MaLR 1 505 0 244 329 141 0 chr9 38975791 38975940 -78886687 + L3 LINE CR1 659 828 -749 1950 145 6 22 chr9 38976056 38976367 -78886260 + AluJb SINE Alu 1 306 -6 1407 214 49 40 chr9 38976791 38977240 -78885387 + MLT1D LTR MaLR 53 505 0 215 291 0 0 chr9 38977441 38977496 -78885131 - L2 LINE L2 -253 3060 3006 739 284 44 25 chr9 38977868 38978230 -78884397 + L1M4 LINE L1 3805 4173 -1973 606 250 76 0 chr9 38978858 38979002 -78883625 + MIR SINE MIR 1 155 -107 * 836 256 97 0 chr9 38978995 38979222 -78883405 - MIR SINE MIR -1 261 13 278 213 29 24 chr9 38979464 38979559 -78883068 + MLT1I LTR MaLR 72 135 -274 249 219 111 11 chr9 38979675 38979809 -78882818 + MLT1I LTR MaLR 278 535 -14 452 273 36 0 chr9 38980579 38980689 -78881938 - MIR SINE MIR -61 147 34 400 292 16 40 chr9 38980942 38981192 -78881435 + L1M4 LINE L1 4881 5124 -1022 * 3699 166 36 14 chr9 38981185 38982174 -78880453 + L1MB8 LINE L1 4977 5991 -187 378 262 8 48 chr9 38982455 38982581 -78880046 + MIR SINE MIR 28 148 -114 454 179 28 19 chr9 38982620 38982726 -78879901 + MLT1G LTR MaLR 12 118 -472 512 213 95 22 chr9 38982752 38982903 -78879724 - MIR SINE MIR -35 227 69 * 748 203 31 129 chr9 38982902 38983158 -78879469 - MIR SINE MIR 0 262 32 197 267 147 43 chr9 38983194 38983310 -78879317 + L2 LINE L2 3182 3309 -4 371 229 30 99 chr9 38984061 38984192 -78878435 + MIR3 SINE MIR 79 200 -8 2338 107 0 0 chr9 38984418 38984718 -78877909 + AluSx SINE Alu 1 300 -12 276 197 0 14 chr9 38984723 38984794 -78877833 + LTR37B LTR ERV1 399 468 0 438 274 37 30 chr9 38985937 38986072 -78876555 - MIR SINE MIR 0 262 127 337 261 16 64 chr9 38986294 38986482 -78876145 + L1MC4a LINE L1 5763 5941 -1867 750 300 21 0 chr9 38988096 38988286 -78874341 + MIR SINE MIR 54 247 -15 445 255 143 43 chr9 38988436 38988597 -78874030 + MIR SINE MIR 17 193 -69 394 204 0 61 chr9 38988872 38988970 -78873657 - MIR SINE MIR -25 237 146 714 219 174 18 chr9 38988989 38989208 -78873419 + MIR SINE MIR 8 260 -2 448 274 39 33 chr9 38989218 38989371 -78873256 - MIR SINE MIR -107 155 2 806 309 23 15 chr9 38989979 38990470 -78872157 - LTR67 LTR ERVL 0 557 19 191 313 15 0 chr9 38991029 38991096 -78871531 + L2 LINE L2 3204 3271 -1 217 324 59 20 chr9 38991111 38991213 -78871414 - L2 LINE L2 -19 3294 3189 352 256 86 34 chr9 38992171 38992288 -78870339 - MIR SINE MIR -80 182 60 181 292 69 76 chr9 38992837 38992981 -78869646 + MIR3 SINE MIR 3 145 -63 186 43 0 0 chr9 38993035 38993058 -78869569 + (TG)n Simple_repeat Simple_repeat 2 24 0 363 289 10 0 chr9 38993551 38993655 -78868972 + MIR SINE MIR 32 136 -126 206 287 26 61 chr9 38993735 38993850 -78868777 - MIR SINE MIR -40 222 112 271 291 0 43 chr9 38994705 38994822 -78867805 + GA-rich Low_complexity Low_complexity 1 112 0 1792 215 153 23 chr9 38995762 38996330 -78866297 - MER115 DNA AcHobo 0 693 52 2094 125 0 47 chr9 38996360 38996681 -78865946 - AluSx SINE Alu -6 306 1 1056 166 33 5 chr9 38996806 38997017 -78865610 + L1MA7 LINE L1 6075 6291 0 23 54 0 0 chr9 38997017 38997054 -78865573 + AT_rich Low_complexity Low_complexity 1 37 0 360 125 0 0 chr9 38998047 38998111 -78864516 + (CA)n Simple_repeat Simple_repeat 1 64 0 250 296 130 0 chr9 38998499 38998614 -78864013 - L2 LINE L2 -1 3271 3142 181 390 0 0 chr9 38998896 38998978 -78863649 - MIR SINE MIR -94 114 33 996 321 87 57 chr9 38999114 38999210 -78863417 + L1M4 LINE L1 3070 3162 -2984 1793 131 67 25 chr9 38999210 38999492 -78863135 + AluSx SINE Alu 9 302 -10 996 321 87 57 chr9 38999492 39000077 -78862550 + L1M4 LINE L1 3162 3771 -2375 1049 128 5 32 chr9 39000576 39000763 -78861864 + MER49 LTR ERV1 715 896 -27 1527 214 61 6 chr9 39001326 39002352 -78860275 + L1 LINE L1 2637 3757 -2389 478 281 40 62 chr9 39002527 39002751 -78859876 - MIR SINE MIR -10 252 34 327 262 13 42 chr9 39002796 39002954 -78859673 + MIR SINE MIR 64 214 -48 764 175 0 0 chr9 39004318 39004438 -78858189 + FLAM_A SINE Alu 1 120 -13 970 275 0 4 chr9 39005001 39005241 -78857386 + MIR SINE MIR 1 239 -23 419 316 98 57 chr9 39005905 39006149 -78856478 - L2 LINE L2 0 3272 3019 406 269 39 18 chr9 39006390 39006567 -78856060 - MIR SINE MIR -71 191 19 404 287 173 7 chr9 39006834 39006984 -78855643 + MIR3 SINE MIR 20 194 -14 2347 160 49 39 chr9 39007200 39007694 -78854933 + MLT1D LTR MaLR 1 499 -6 580 208 135 78 chr9 39007865 39008057 -78854570 - MIR SINE MIR -36 226 24 331 337 10 0 chr9 39008339 39008437 -78854190 - L3 LINE CR1 -143 1434 1336 1820 148 4 0 chr9 39009021 39009284 -78853343 + AluJb SINE Alu 35 298 -14 246 296 0 0 chr9 39009508 39009562 -78853065 + L2 LINE L2 3127 3180 -92 200 229 0 57 chr9 39010506 39010576 -78852051 - L2 LINE L2 -298 2974 2909 834 249 17 9 chr9 39010680 39010884 -78851743 - MER102a DNA MER1_type -1090 327 119 1814 129 0 4 chr9 39010884 39011139 -78851488 - AluJb SINE Alu -5 307 54 834 249 17 9 chr9 39011139 39011167 -78851460 - MER102a DNA MER1_type -1298 119 93 597 231 108 51 chr9 39011252 39011547 -78851080 - L1MC4a LINE L1 -1767 6041 5730 180 268 18 36 chr9 39011786 39011842 -78850785 + L3 LINE CR1 1407 1461 -116 204 40 0 0 chr9 39012003 39012028 -78850599 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 390 302 177 36 chr9 39012048 39012353 -78850274 + L2 LINE L2 2945 3292 -21 891 106 8 15 chr9 39012397 39012529 -78850098 - FLAM_C SINE Alu -2 131 1 776 274 41 0 chr9 39013307 39013526 -78849101 - MIR SINE MIR 0 262 35 412 224 121 0 chr9 39013642 39013758 -78848869 + MIR3 SINE MIR 35 164 -44 389 278 38 41 chr9 39013915 39014100 -78848527 - MIR3 SINE MIR -61 147 11 1917 244 49 17 chr9 39015090 39015795 -78846832 + MER20B DNA MER1_type 6 778 -5 524 267 61 113 chr9 39016003 39016559 -78846068 - L1MC4a LINE L1 -529 5592 5356 414 286 82 18 chr9 39016630 39016801 -78845826 - L1MC4a LINE L1 -846 5300 5119 1817 153 53 0 chr9 39016859 39017141 -78845486 + AluJo SINE Alu 1 297 -15 300 294 100 18 chr9 39017326 39017654 -78844973 - L1MC4a LINE L1 -1296 4850 4498 21 0 0 0 chr9 39017704 39017725 -78844902 + AT_rich Low_complexity Low_complexity 1 21 0 2083 167 0 0 chr9 39017743 39018054 -78844573 - AluSx SINE Alu -1 311 1 21 82 0 0 chr9 39018095 39018144 -78844483 + AT_rich Low_complexity Low_complexity 1 49 0 483 235 134 32 chr9 39018372 39018559 -78844068 - MER102a DNA MER1_type -11 319 114 14928 100 24 22 chr9 39018761 39019454 -78843173 + Tigger1 DNA MER2_type 4 694 -1724 1997 150 7 0 chr9 39019454 39019747 -78842880 + AluJo SINE Alu 5 299 -13 14928 100 24 22 chr9 39019747 39020631 -78841996 + Tigger1 DNA MER2_type 694 1589 -829 2536 78 3 0 chr9 39020631 39020937 -78841690 + AluSg1 SINE Alu 1 307 -2 14928 100 24 22 chr9 39020937 39021645 -78840982 + Tigger1 DNA MER2_type 1589 2294 -124 1229 146 15 0 chr9 39021647 39021846 -78840781 - MER46A DNA MER2_type -2 234 33 743 156 0 37 chr9 39021856 39021873 -78840754 + Tigger1 DNA MER2_type 2288 2304 -114 2578 78 3 0 chr9 39021873 39022182 -78840445 - AluSq SINE Alu -3 310 1 743 156 0 37 chr9 39022182 39022299 -78840328 + Tigger1 DNA MER2_type 2304 2417 -1 252 237 235 0 chr9 39022393 39022503 -78840124 - MIR3 SINE MIR -33 175 62 642 290 138 17 chr9 39022521 39022752 -78839875 + MIR SINE MIR 4 262 0 252 364 66 0 chr9 39022824 39022945 -78839682 + MIR SINE MIR 19 147 -61 560 338 54 4 chr9 39023678 39023918 -78838709 - MIR SINE MIR -2 260 9 408 262 28 0 chr9 39024984 39025091 -78837536 - MIR3 SINE MIR -6 202 93 2041 151 7 0 chr9 39025507 39025799 -78836828 + AluJb SINE Alu 1 294 -18 824 148 11 17 chr9 39025804 39025980 -78836647 + GA-rich Low_complexity Low_complexity 1 175 0 293 115 0 19 chr9 39025984 39026036 -78836591 + (GGAA)n Simple_repeat Simple_repeat 2 52 0 806 304 33 28 chr9 39026472 39026863 -78835764 + L1M4 LINE L1 4633 5025 -1121 699 223 73 59 chr9 39027159 39027379 -78835248 - MIR SINE MIR -11 251 29 539 288 85 5 chr9 39027418 39027630 -78834997 - MER112 DNA MER1_type -31 229 1 2426 104 0 3 chr9 39028876 39029183 -78833444 - AluSx SINE Alu -4 308 3 294 304 22 22 chr9 39029429 39029564 -78833063 + L2 LINE L2 2924 3058 -214 195 204 86 97 chr9 39029651 39029744 -78832883 + L2 LINE L2 3181 3272 0 724 143 14 0 chr9 39030372 39030512 -78832115 + GA-rich Low_complexity Low_complexity 3 144 0 2074 134 3 3 chr9 39030911 39031202 -78831425 - AluSx SINE Alu -21 291 1 2253 119 0 10 chr9 39031392 39031702 -78830925 - AluJb SINE Alu -5 307 1 333 327 7 17 chr9 39031750 39031899 -78830728 + MIR SINE MIR 20 164 -64 214 284 59 0 chr9 39032459 39032561 -78830066 + MIR3 SINE MIR 96 203 -5 568 202 64 143 chr9 39032567 39032742 -78829885 + L1MC5 LINE L1 7432 7619 -342 2324 99 0 7 chr9 39032742 39033045 -78829582 + AluSx SINE Alu 1 301 -11 568 202 64 143 chr9 39033045 39033168 -78829459 + L1MC5 LINE L1 7619 7696 -265 1760 172 42 0 chr9 39033168 39033453 -78829174 + AluJo SINE Alu 1 297 -15 568 202 64 143 chr9 39033453 39033530 -78829097 + L1MC5 LINE L1 7696 7778 -183 1424 253 59 5 chr9 39033539 39033927 -78828700 + L1MB8 LINE L1 5770 6178 0 2024 134 43 3 chr9 39034049 39034348 -78828279 + AluSx SINE Alu 1 311 -1 271 315 91 0 chr9 39034964 39035107 -78827520 + MIR3 SINE MIR 29 184 -24 282 305 76 8 chr9 39035268 39035430 -78827197 + MIR SINE MIR 3 175 -69 958 173 43 19 chr9 39035542 39035750 -78826877 + L1MD1 LINE L1 6027 6239 -3 375 307 87 41 chr9 39035868 39036086 -78826541 + L2 LINE L2 3044 3271 -1 2323 108 7 0 chr9 39036275 39036581 -78826046 + AluSp SINE Alu 1 308 -5 291 210 328 0 chr9 39036920 39037039 -78825588 - L3 LINE CR1 -119 1458 1301 429 70 0 0 chr9 39037992 39038049 -78824578 + (CA)n Simple_repeat Simple_repeat 1 57 0 642 230 159 26 chr9 39038330 39038556 -78824071 - MIR SINE MIR -3 259 4 314 261 194 37 chr9 39038566 39038700 -78823927 - MIR SINE MIR -106 156 2 348 133 0 0 chr9 39040949 39041009 -78821618 + (GA)n Simple_repeat Simple_repeat 2 61 0 460 254 0 25 chr9 39041926 39042048 -78820579 + L2 LINE L2 3178 3296 -17 460 286 121 15 chr9 39042300 39042499 -78820128 + MIR SINE MIR 9 228 -34 217 249 0 0 chr9 39042542 39042599 -78820028 + MIR SINE MIR 36 92 -116 290 275 114 8 chr9 39043367 39043498 -78819129 - MIR3 SINE MIR -20 188 44 376 221 12 12 chr9 39043827 39043913 -78818714 - MIR SINE MIR -103 159 74 366 23 0 0 chr9 39044701 39044744 -78817883 + (CA)n Simple_repeat Simple_repeat 2 44 0 1806 175 7 0 chr9 39045079 39045371 -78817256 + AluJo SINE Alu 1 294 -18 717 253 39 0 chr9 39045456 39045634 -78816993 - MIR SINE MIR -70 192 8 1875 163 3 22 chr9 39046399 39046712 -78815915 - AluJb SINE Alu -1 311 5 781 255 27 0 chr9 39046926 39047114 -78815513 + MIR SINE MIR 53 245 -17 1363 142 102 0 chr9 39048563 39048789 -78813838 - AluJo SINE Alu -3 309 61 220 220 0 0 chr9 39048816 39048866 -78813761 + (TTATA)n Simple_repeat Simple_repeat 4 53 0 453 304 82 25 chr9 39049172 39049415 -78813212 - MIR SINE MIR 0 262 6 247 274 64 76 chr9 39050129 39050226 -78812401 - MIR SINE MIR -1 261 164 2357 68 4 0 chr9 39050226 39050535 -78812092 - AluY SINE Alu 0 310 1 247 274 64 76 chr9 39050535 39050593 -78812034 - MIR SINE MIR -98 164 107 205 315 196 0 chr9 39050760 39050852 -78811775 - MIR SINE MIR -150 112 3 860 300 63 28 chr9 39051576 39051906 -78810721 - L3 LINE CR1 -1 1576 1228 2319 99 0 10 chr9 39051906 39052209 -78810418 - AluSg SINE Alu -2 308 9 860 300 63 28 chr9 39052209 39052275 -78810352 - L3 LINE CR1 -349 1228 1166 473 309 60 28 chr9 39052397 39052830 -78809797 - L1MEd LINE L1 -3499 2630 2184 21 0 0 0 chr9 39052912 39052933 -78809694 + AT_rich Low_complexity Low_complexity 1 21 0 3260 222 71 28 chr9 39053307 39053410 -78809217 - L1MCb LINE L1 -4009 2736 2639 1517 119 5 5 chr9 39053410 39053620 -78809007 - AluSg/x SINE Alu -7 303 94 3260 222 71 28 chr9 39053620 39054966 -78807661 - L1MCb LINE L1 -4106 2639 1009 2106 143 3 0 chr9 39054966 39055259 -78807368 + AluJb SINE Alu 1 294 -18 3260 222 71 28 chr9 39055259 39055412 -78807215 - L1MCb LINE L1 -5736 1009 864 307 271 23 45 chr9 39055435 39055568 -78807059 - L1MCb LINE L1 -6292 272 143 * 674 294 79 46 chr9 39055564 39056586 -78806041 - L1MEd LINE L1 -788 1702 551 498 336 35 35 chr9 39056655 39056941 -78805686 - L1MEd LINE L1 -5711 408 123 304 244 64 26 chr9 39056953 39057031 -78805596 - L1MC4 LINE L1 -1334 6708 6628 26 74 0 0 chr9 39057091 39057145 -78805482 + AT_rich Low_complexity Low_complexity 1 54 0 213 94 0 0 chr9 39057406 39057438 -78805189 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 277 292 115 0 chr9 39057602 39057698 -78804929 - MIR3 SINE MIR -11 197 91 205 367 7 43 chr9 39059827 39059966 -78802661 + L2 LINE L2 2672 2805 -509 410 326 63 0 chr9 39060382 39060572 -78802055 - L3 LINE CR1 -2 1575 1374 269 309 151 72 chr9 39060599 39060903 -78801724 - L3 LINE CR1 -343 1234 907 361 317 104 39 chr9 39060972 39061202 -78801425 + MIR SINE MIR 13 257 -5 264 167 0 0 chr9 39062973 39063021 -78799606 + (CA)n Simple_repeat Simple_repeat 2 49 0 335 208 158 42 chr9 39063813 39063933 -78798694 - MIR3 SINE MIR -71 137 4 236 340 133 13 chr9 39065000 39065150 -78797477 + MIR3 SINE MIR 36 203 -5 2329 93 0 3 chr9 39065174 39065476 -78797151 + AluY SINE Alu 1 301 -10 2356 105 0 10 chr9 39065482 39065796 -78796831 + AluSq SINE Alu 1 311 -2 465 314 116 19 chr9 39066052 39066547 -78796080 + L2 LINE L2 2766 3310 -3 343 280 65 0 chr9 39066550 39066643 -78795984 + MIR3 SINE MIR 78 176 -32 577 234 43 14 chr9 39068097 39068238 -78794389 - MIR SINE MIR -29 233 89 1414 273 70 18 chr9 39068385 39068829 -78793798 + L1MC4a LINE L1 5488 5954 -1854 261 139 0 0 chr9 39070083 39070126 -78792501 + (CA)n Simple_repeat Simple_repeat 1 43 0 335 138 17 0 chr9 39070878 39070936 -78791691 + AluS SINE Alu 2 60 -248 28 29 0 0 chr9 39071168 39071203 -78791424 + AT_rich Low_complexity Low_complexity 1 35 0 187 200 0 0 chr9 39071927 39071972 -78790655 + L2 LINE L2 3017 3061 -211 234 298 36 12 chr9 39072267 39072351 -78790276 - L2 LINE L2 -51 3221 3136 525 281 28 28 chr9 39073443 39073621 -78789006 + MIR3 SINE MIR 2 179 -29 2406 93 0 0 chr9 39073921 39074221 -78788406 + AluSx SINE Alu 1 300 -12 1116 42 0 0 chr9 39074222 39074364 -78788263 + (GGAAA)n Simple_repeat Simple_repeat 4 145 0 1862 143 0 52 chr9 39074760 39074899 -78787728 + AluJo SINE Alu 1 146 -166 2212 121 20 0 chr9 39074899 39075197 -78787430 + AluSx SINE Alu 1 304 -8 1862 143 0 52 chr9 39075197 39075365 -78787262 + AluJo SINE Alu 146 292 -20 694 284 51 9 chr9 39075539 39075754 -78786873 - MIR SINE MIR -17 245 22 416 298 21 35 chr9 39075799 39075940 -78786687 + MIR SINE MIR 118 256 -6 456 234 38 3 chr9 39076293 39076418 -78786209 - MIR SINE MIR -57 151 64 778 252 39 47 chr9 39076460 39076558 -78786069 + MIR SINE MIR 4 101 -161 2405 93 0 0 chr9 39076558 39076860 -78785767 - AluY SINE Alu -9 302 1 778 252 39 47 chr9 39076860 39077019 -78785608 + MIR SINE MIR 101 259 -3 207 245 404 0 chr9 39077032 39077126 -78785501 + L2 LINE L2 3137 3268 -4 192 315 19 0 chr9 39077646 39077700 -78784927 - L2 LINE L2 -14 3258 3204 636 147 120 33 chr9 39078319 39078469 -78784158 - MIR SINE MIR -16 246 84 533 233 58 0 chr9 39078487 39078607 -78784020 - MIR SINE MIR -129 133 7 1612 147 132 7 chr9 39078697 39078969 -78783658 - AluY SINE Alu -5 306 1 303 315 76 33 chr9 39078974 39079158 -78783469 - L2 LINE L2 -254 3018 2827 207 0 0 0 chr9 39079679 39079702 -78782925 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 468 243 17 23 chr9 39080713 39080889 -78781738 - MIR SINE MIR -59 203 32 339 335 68 23 chr9 39081001 39081177 -78781450 - MIR3 SINE MIR -9 199 16 1603 219 58 42 chr9 39082033 39082595 -78780032 + L2 LINE L2 2750 3309 -4 255 197 289 0 chr9 39082927 39083003 -78779624 + MIR SINE MIR 55 152 -110 2104 130 3 0 chr9 39083169 39083469 -78779158 + AluSx SINE Alu 12 312 0 2503 237 65 1 chr9 39084099 39084794 -78777833 + MER20B DNA MER1_type 34 772 -11 1133 114 0 0 chr9 39084800 39084949 -78777678 - AluJb SINE Alu -163 149 1 527 318 33 0 chr9 39085504 39085611 -78777016 + MIR SINE MIR 7 122 -140 2397 78 0 47 chr9 39085611 39085931 -78776696 - AluSq SINE Alu -8 305 1 527 318 33 0 chr9 39085931 39085974 -78776653 + MIR SINE MIR 122 162 -100 469 259 0 0 chr9 39086147 39086255 -78776372 - MIR3 SINE MIR -34 174 67 234 330 53 0 chr9 39086662 39086756 -78775871 - L2 LINE L2 -36 3236 3138 22 70 0 0 chr9 39087241 39087284 -78775343 + GC_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr9 39087314 39087345 -78775282 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr9 39087432 39087453 -78775174 + GC_rich Low_complexity Low_complexity 1 21 0 46 54 0 0 chr9 39087493 39087567 -78775060 + GC_rich Low_complexity Low_complexity 1 74 0 255 331 57 16 chr9 39088160 39088284 -78774343 - MIR SINE MIR -21 241 113 467 313 61 0 chr9 39088402 39088565 -78774062 - MIR SINE MIR -19 243 71 202 299 126 0 chr9 39088671 39088758 -78773869 - MIR3 SINE MIR -53 155 58 180 77 0 0 chr9 39088988 39089014 -78773613 + (CCTG)n Simple_repeat Simple_repeat 2 27 0 200 338 14 0 chr9 39089177 39089248 -78773379 + G-rich Low_complexity Low_complexity 5 76 0 2037 135 0 7 chr9 39089574 39089862 -78772765 + AluJo SINE Alu 21 306 -6 480 266 113 20 chr9 39089977 39090180 -78772447 - MIR SINE MIR 0 262 41 662 225 164 24 chr9 39090489 39090702 -78771925 + MIR SINE MIR 19 261 -1 532 327 78 37 chr9 39091005 39091326 -78771301 - L2 LINE L2 -7 3265 2932 452 318 188 0 chr9 39091316 39091508 -78771119 - MIR SINE MIR 0 262 35 * 436 285 184 46 chr9 39091516 39091863 -78770764 - L2 LINE L2 -385 2929 2535 2140 133 3 0 chr9 39092003 39092304 -78770323 + AluJb SINE Alu 1 302 -10 234 183 232 49 chr9 39092424 39092506 -78770121 - MIR SINE MIR -91 117 21 646 208 78 0 chr9 39092511 39092665 -78769962 - MIR3 SINE MIR -10 198 33 1919 173 92 50 chr9 39093998 39094097 -78768530 + Charlie1b DNA MER1_type 1 94 -2667 774 70 0 0 chr9 39094097 39094197 -78768430 - L1PA8 LINE L1 -3 6169 6070 1919 173 92 50 chr9 39094197 39094599 -78768028 + Charlie1b DNA MER1_type 94 523 0 243 321 117 31 chr9 39094638 39094800 -78767827 - MIR3 SINE MIR -7 201 26 201 284 104 37 chr9 39095442 39095576 -78767051 + MIR3 SINE MIR 29 171 -37 490 226 65 85 chr9 39095879 39096078 -78766549 - Charlie8 DNA MER1_type -2211 206 12 316 223 68 39 chr9 39096835 39096938 -78765689 + MIR3 SINE MIR 79 184 -24 355 281 50 44 chr9 39097404 39097564 -78765063 - MIR SINE MIR -12 250 90 199 212 24 0 chr9 39097998 39098083 -78764544 + GA-rich Low_complexity Low_complexity 1 87 0 473 344 57 16 chr9 39099189 39099436 -78763191 - L3 LINE CR1 -103 1474 1218 274 237 0 17 chr9 39099668 39099727 -78762900 - L2 LINE L2 0 3272 3215 1080 156 21 5 chr9 39099729 39099921 -78762706 + Charlie5 DNA MER1_type 1 195 -2417 1306 158 27 4 chr9 39099930 39100189 -78762438 + Charlie5 DNA MER1_type 2358 2622 0 209 289 0 0 chr9 39100742 39100794 -78761833 + MIR SINE MIR 94 145 -63 685 215 0 7 chr9 39101647 39101782 -78760845 + AluSq/x SINE Alu 2 135 -178 979 290 116 37 chr9 39101798 39102315 -78760312 - L3 LINE CR1 -37 1540 983 240 35 0 0 chr9 39102986 39103015 -78759612 + (T)n Simple_repeat Simple_repeat 1 29 0 243 0 0 0 chr9 39104330 39104357 -78758270 + (A)n Simple_repeat Simple_repeat 1 27 0 630 219 124 55 chr9 39104558 39104732 -78757895 - MIR SINE MIR 0 262 71 1997 125 23 20 chr9 39104732 39105035 -78757592 + AluJo SINE Alu 2 305 -7 630 219 124 55 chr9 39105035 39105061 -78757566 - MIR SINE MIR -191 71 48 409 275 99 24 chr9 39105152 39105321 -78757306 - MIR SINE MIR -62 146 13 385 323 0 0 chr9 39106005 39106098 -78756529 + MIR SINE MIR 40 132 -76 422 327 7 26 chr9 39106634 39106787 -78755840 - MIR3 SINE MIR -32 176 27 21 0 0 0 chr9 39107618 39107639 -78754988 + AT_rich Low_complexity Low_complexity 1 21 0 344 262 5 129 chr9 39107833 39108035 -78754592 + MIR3 SINE MIR 3 179 -29 380 347 28 0 chr9 39108042 39108186 -78754441 + MIR3 SINE MIR 57 204 -4 306 194 0 14 chr9 39108866 39108938 -78753689 - L1ME4a LINE L1 -2 6119 6049 1129 165 0 0 chr9 39109046 39109222 -78753405 - AluSg/x SINE Alu -1 309 134 2159 120 19 7 chr9 39109223 39109531 -78753096 - AluSx SINE Alu 0 312 1 261 233 0 0 chr9 39109535 39109595 -78753032 - L1ME4a LINE L1 -215 5906 5847 974 269 45 12 chr9 39110392 39110634 -78751993 + MIR SINE MIR 13 262 0 1798 122 20 20 chr9 39110720 39111016 -78751611 + L1MA2 LINE L1 6009 6304 0 294 333 0 0 chr9 39111495 39111567 -78751060 - MIR SINE MIR -63 145 74 1874 141 4 4 chr9 39112058 39112328 -78750299 + AluJb SINE Alu 43 312 0 765 253 25 0 chr9 39112408 39112610 -78750017 + Charlie8 DNA MER1_type 26 232 -2185 189 337 109 0 chr9 39113490 39113591 -78749036 + MIR SINE MIR 39 150 -58 404 218 53 8 chr9 39113790 39113923 -78748704 + MER113 DNA MER1_type? 28 166 -355 951 121 0 8 chr9 39114145 39114277 -78748350 + FLAM_C SINE Alu 1 131 -12 637 157 37 111 chr9 39114341 39114558 -78748069 + MER102a DNA MER1_type 128 328 -2 251 286 0 0 chr9 39114558 39114620 -78748007 + MER113 DNA MER1_type? 456 517 -4 180 355 18 55 chr9 39114858 39114968 -78747659 + L2 LINE L2 3125 3230 -42 391 288 9 9 chr9 39115620 39115731 -78746896 - MIR3 SINE MIR -90 118 8 1381 152 56 50 chr9 39116469 39116757 -78745870 + MER33 DNA MER1_type 1 293 -2292 2508 63 3 3 chr9 39116757 39117057 -78745570 - AluSp SINE Alu -13 300 1 1381 152 56 50 chr9 39117057 39117090 -78745537 + MER33 DNA MER1_type 293 324 0 216 135 0 0 chr9 39117204 39117241 -78745386 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 188 382 20 29 chr9 39117250 39117352 -78745275 - MIR SINE MIR -68 140 40 262 306 188 21 chr9 39118420 39118564 -78744063 - MIR SINE MIR -75 187 20 24 0 0 0 chr9 39118590 39118614 -78744013 + AT_rich Low_complexity Low_complexity 1 24 0 474 267 22 39 chr9 39119172 39119333 -78743294 + MIR SINE MIR 21 183 -60 371 267 27 20 chr9 39120303 39120449 -78742178 + CT-rich Low_complexity Low_complexity 1 147 0 245 320 39 0 chr9 39121037 39121115 -78741512 + MIR SINE MIR 63 143 -65 256 282 100 45 chr9 39125211 39125321 -78737306 + MIR3 SINE MIR 39 154 -54 23 0 0 0 chr9 39128907 39128930 -78733697 + GC_rich Low_complexity Low_complexity 1 23 0 238 253 22 66 chr9 39129412 39129503 -78733124 + MIR3 SINE MIR 117 203 -5 361 275 63 49 chr9 39130960 39131102 -78731525 - MIR3 SINE MIR -14 194 51 305 266 56 70 chr9 39131479 39131622 -78731005 - MIR3 SINE MIR -34 174 34 25 0 0 0 chr9 39132156 39132181 -78730446 + AT_rich Low_complexity Low_complexity 1 25 0 242 303 16 57 chr9 39132802 39132924 -78729703 + MIR3 SINE MIR 54 170 -38 261 0 0 0 chr9 39134777 39134806 -78727821 + (CA)n Simple_repeat Simple_repeat 2 30 0 321 26 0 0 chr9 39135266 39135304 -78727323 + (T)n Simple_repeat Simple_repeat 1 38 0 221 182 18 0 chr9 39141313 39141368 -78721259 + (TA)n Simple_repeat Simple_repeat 2 57 0 357 306 118 6 chr9 39143316 39143486 -78719141 - MER5A DNA MER1_type 0 189 1 2269 121 7 0 chr9 39143844 39144150 -78718477 - AluSx SINE Alu -4 308 1 182 304 80 27 chr9 39144250 39144362 -78718265 - L2 LINE L2 -266 3006 2889 2036 153 0 0 chr9 39144441 39144736 -78717891 - AluJb SINE Alu -17 295 1 272 243 0 93 chr9 39145202 39145309 -78717318 + MIR SINE MIR 102 198 -64 2443 97 0 0 chr9 39145381 39145690 -78716937 - AluSg SINE Alu 0 310 2 213 94 0 0 chr9 39146094 39146126 -78716501 + (CA)n Simple_repeat Simple_repeat 2 33 0 1855 144 32 3 chr9 39146317 39146601 -78716026 + AluJb SINE Alu 1 292 -20 2055 199 22 17 chr9 39146616 39147023 -78715604 - MER47B DNA MER2_type -8 410 2 340 266 195 18 chr9 39147126 39147295 -78715332 - L3 LINE CR1 -76 1501 1303 2247 116 0 0 chr9 39147658 39147950 -78714677 + AluSx SINE Alu 2 293 -19 386 257 40 54 chr9 39148512 39148660 -78713967 - MIR3 SINE MIR -6 202 57 600 252 87 44 chr9 39148689 39148895 -78713732 - MIR SINE MIR -36 226 12 581 287 144 42 chr9 39149594 39150072 -78712555 - L1ME4a LINE L1 -71 6050 5524 318 213 75 43 chr9 39150268 39150362 -78712265 - MIR SINE MIR -109 153 57 492 287 14 14 chr9 39150624 39150767 -78711860 - MIR3 SINE MIR -21 187 45 559 143 0 11 chr9 39150838 39150929 -78711698 - AluJb SINE Alu -39 273 184 935 132 0 59 chr9 39150929 39151081 -78711546 - FLAM_C SINE Alu 0 143 1 232 277 72 0 chr9 39151151 39151234 -78711393 + MER103 DNA DNA 1 89 -77 234 148 34 91 chr9 39152596 39152674 -78709953 + MIR SINE MIR 84 143 -65 232 239 13 138 chr9 39152714 39152873 -78709754 + MER5B DNA MER1_type 40 178 0 406 286 44 59 chr9 39152963 39153062 -78709565 + MIR3 SINE MIR 9 108 -100 2112 130 3 3 chr9 39153062 39153361 -78709266 + AluSx SINE Alu 2 300 -12 406 286 44 59 chr9 39153361 39153464 -78709163 + MIR3 SINE MIR 108 208 0 2521 76 0 0 chr9 39153858 39154159 -78708468 - AluSg SINE Alu -9 301 1 293 157 36 60 chr9 39154305 39154388 -78708239 - L1ME3A LINE L1 -227 5943 5863 1468 163 125 0 chr9 39154587 39154851 -78707776 + AluJb SINE Alu 1 297 -15 192 272 48 78 chr9 39155025 39155128 -78707499 + MIR SINE MIR 96 144 -64 632 258 11 26 chr9 39155458 39155648 -78706979 - MIR3 SINE MIR -6 202 16 365 240 124 41 chr9 39155926 39156047 -78706580 + L2 LINE L2 3142 3272 0 192 296 0 0 chr9 39156612 39156654 -78705973 + MIR SINE MIR 30 71 -137 1097 222 7 58 chr9 39156654 39156847 -78705780 + MIR SINE MIR 2 178 -84 888 193 0 24 chr9 39156847 39157013 -78705614 + FRAM SINE Alu 1 162 -4 1097 222 7 58 chr9 39157013 39157094 -78705533 + MIR SINE MIR 178 262 0 491 264 65 7 chr9 39157096 39157251 -78705376 + L2 LINE L2 2927 3090 -223 245 329 0 0 chr9 39157925 39157998 -78704629 + GA-rich Low_complexity Low_complexity 2 74 0 185 105 0 26 chr9 39158051 39158081 -78704546 + (TA)n Simple_repeat Simple_repeat 1 31 -6 2143 122 7 0 chr9 39158081 39158375 -78704252 - AluSx SINE Alu -16 296 1 185 105 0 26 chr9 39158375 39158382 -78704245 + (TA)n Simple_repeat Simple_repeat 31 37 0 1709 170 14 17 chr9 39158899 39159061 -78703566 - AluJb SINE Alu -19 293 131 216 0 0 0 chr9 39159061 39159085 -78703542 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1709 170 14 17 chr9 39159085 39159216 -78703411 - AluJb SINE Alu -181 131 1 586 226 155 7 chr9 39159348 39159503 -78703124 + MER5A DNA MER1_type 4 181 -8 362 357 133 34 chr9 39159734 39160499 -78702128 + L2 LINE L2 1820 2660 -654 1790 158 3 20 chr9 39160560 39160858 -78701769 - AluJb SINE Alu -19 293 1 957 103 15 29 chr9 39161020 39161156 -78701471 + AluJo SINE Alu 1 134 -178 2127 81 33 4 chr9 39161256 39161565 -78701062 + AluY SINE Alu 1 317 0 1644 195 51 48 chr9 39161749 39161985 -78700642 + MER63B DNA MER1_type 1 235 -827 1663 189 10 16 chr9 39161985 39162292 -78700335 + AluJo SINE Alu 1 305 -7 1644 195 51 48 chr9 39162292 39162344 -78700283 + MER63B DNA MER1_type 235 285 -777 2334 104 0 3 chr9 39162344 39162642 -78699985 - AluSx SINE Alu -13 299 3 1644 195 51 48 chr9 39162642 39162787 -78699840 + MER63B DNA MER1_type 285 436 0 268 319 64 78 chr9 39162809 39163166 -78699461 + L2 LINE L2 2596 2947 -367 853 127 0 15 chr9 39163364 39163498 -78699129 - FLAM_C SINE Alu 0 133 2 492 82 0 124 chr9 39163811 39163843 -78698784 + L1MB3 LINE L1 5826 5860 -323 1496 193 10 43 chr9 39163843 39164148 -78698479 - AluJo SINE Alu -17 295 1 492 82 0 124 chr9 39164148 39164212 -78698415 + L1MB3 LINE L1 5860 5910 -273 1025 170 0 0 chr9 39164240 39164399 -78698228 + AluJb SINE Alu 145 303 -9 1406 170 0 0 chr9 39164399 39164640 -78697987 + L1MB3 LINE L1 5905 6145 -38 968 182 0 12 chr9 39164643 39164808 -78697819 - AluJb SINE Alu -16 296 134 2373 110 0 0 chr9 39164808 39165109 -78697518 - AluSx SINE Alu -11 301 1 252 86 0 0 chr9 39165151 39165186 -78697441 + (A)n Simple_repeat Simple_repeat 1 35 0 706 272 194 26 chr9 39215698 39216044 -78646583 - L2 LINE L2 -455 2859 2456 1909 140 27 3 chr9 39216246 39216538 -78646089 + AluJb SINE Alu 1 299 -13 630 221 72 67 chr9 39216757 39217289 -78645338 + L1ME LINE L1 782 1320 -4760 23 54 0 0 chr9 39217828 39217865 -78644762 + AT_rich Low_complexity Low_complexity 1 37 0 452 250 199 19 chr9 39218310 39218466 -78644161 + MIR3 SINE MIR 10 193 -15 981 214 41 19 chr9 39218835 39219355 -78643272 - L1MC4 LINE L1 0 8042 7420 814 121 0 24 chr9 39219526 39219650 -78642977 + AluSq/x SINE Alu 1 121 -191 755 223 112 0 chr9 39220980 39221177 -78641450 - MER58A DNA MER1_type -2 222 4 194 214 24 119 chr9 39223029 39223113 -78639514 - L2 LINE L2 -10 3262 3187 2279 95 10 0 chr9 39223123 39223419 -78639208 + AluSx SINE Alu 1 299 -13 4799 97 0 1 chr9 39223553 39224283 -78638344 - L1P LINE L1 -789 5357 4629 860 158 7 0 chr9 39224378 39224530 -78638097 + MSTD LTR MaLR 1 153 -243 2158 118 0 3 chr9 39224978 39225266 -78637361 - AluSg SINE Alu -23 287 1 472 262 112 54 chr9 39225279 39225573 -78637054 - L1MDb LINE L1 -3580 2960 2650 265 149 0 68 chr9 39225702 39225776 -78636851 + (CCCCCT)n Simple_repeat Simple_repeat 3 71 0 1661 175 22 0 chr9 39225828 39226102 -78636525 - AluJb SINE Alu -32 280 1 1297 201 4 8 chr9 39226337 39226581 -78636046 + AluJo SINE Alu 44 286 -26 353 280 125 15 chr9 39226638 39226838 -78635789 - L1MDb LINE L1 -4583 1957 1736 2379 96 40 6 chr9 39226940 39227294 -78635333 + L1PA8 LINE L1 5799 6164 -8 403 239 79 35 chr9 39227323 39227531 -78635096 - MIR SINE MIR -38 224 4 1726 140 75 4 chr9 39227822 39228101 -78634526 + AluJb SINE Alu 1 299 -13 391 242 44 11 chr9 39228880 39228971 -78633656 - L3 LINE CR1 -1466 111 18 294 340 57 25 chr9 39229360 39229519 -78633108 + MIR3 SINE MIR 34 197 -11 255 265 13 53 chr9 39230346 39230497 -78632130 + GA-rich Low_complexity Low_complexity 3 147 0 2122 66 4 7 chr9 39230600 39230871 -78631756 + AluY SINE Alu 3 272 -39 450 108 0 0 chr9 39230874 39230957 -78631670 + (CAGA)n Simple_repeat Simple_repeat 2 84 0 2445 90 0 3 chr9 39230971 39231283 -78631344 + AluSq SINE Alu 1 311 -2 697 120 5 68 chr9 39231595 39231786 -78630841 + (TCCCC)n Simple_repeat Simple_repeat 1 179 0 865 218 63 108 chr9 39231847 39232212 -78630415 - L1MDb LINE L1 -5163 1377 1039 2138 109 0 3 chr9 39232212 39232497 -78630130 - AluSq SINE Alu -29 284 1 865 218 63 108 chr9 39232497 39232613 -78630014 - L1MDb LINE L1 -5501 1039 919 376 354 135 29 chr9 39233126 39233437 -78629190 - L1MDb LINE L1 -6192 348 5 2380 69 3 16 chr9 39233545 39233850 -78628777 + AluSp SINE Alu 1 301 -12 207 318 0 0 chr9 39234185 39234270 -78628357 + T-rich Low_complexity Low_complexity 1 85 0 440 308 144 16 chr9 39234928 39235178 -78627449 - L3 LINE CR1 -1 1576 1295 2538 52 0 7 chr9 39236057 39236364 -78626263 - AluY SINE Alu -6 305 1 2310 108 0 0 chr9 39236621 39236917 -78625710 + AluSx SINE Alu 1 296 -16 3103 137 136 91 chr9 39237347 39237919 -78624708 - L1MC3 LINE L1 -15 7770 7075 273 270 0 14 chr9 39237919 39237993 -78624634 - MLT1F1 LTR MaLR -450 117 45 3103 137 136 91 chr9 39237993 39238208 -78624419 - L1MC3 LINE L1 -710 7075 6871 35 24 0 0 chr9 39238216 39238258 -78624369 + AT_rich Low_complexity Low_complexity 1 42 0 243 0 0 0 chr9 39238258 39238285 -78624342 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2160 99 3 0 chr9 39238287 39238569 -78624058 - AluSq SINE Alu -30 283 1 772 149 16 0 chr9 39238590 39238711 -78623916 - FLAM_C SINE Alu -10 123 1 192 77 0 0 chr9 39238711 39238737 -78623890 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 907 134 13 6 chr9 39238785 39238942 -78623685 - L1MC3 LINE L1 -923 6862 6705 1782 179 7 3 chr9 39238990 39239287 -78623340 - AluJb SINE Alu -14 298 1 268 265 122 0 chr9 39239325 39239423 -78623204 + MIR SINE MIR 104 213 -49 1426 194 13 45 chr9 39239579 39239893 -78622734 - AluJb SINE Alu -8 304 1 2138 69 31 17 chr9 39240178 39240467 -78622160 + AluY SINE Alu 1 293 -18 24 0 0 0 chr9 39240570 39240594 -78622033 + AT_rich Low_complexity Low_complexity 1 24 0 192 303 131 20 chr9 39240963 39241062 -78621565 - L2 LINE L2 -6 3266 3157 256 290 70 40 chr9 39241492 39241592 -78621035 + L2 LINE L2 3156 3258 -14 2368 113 0 0 chr9 39244275 39244586 -78618041 - AluSx SINE Alu -1 311 1 24 0 0 0 chr9 39245441 39245465 -78617162 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr9 39246295 39246320 -78616307 + AT_rich Low_complexity Low_complexity 1 25 0 223 359 66 50 chr9 39247444 39247625 -78615002 + L2 LINE L2 2872 3055 -217 432 111 28 14 chr9 39248451 39248523 -78614104 - AluSg/x SINE Alu -154 156 84 1358 174 5 0 chr9 39248523 39248742 -78613885 - AluJb SINE Alu -92 220 1 216 303 0 0 chr9 39249213 39249279 -78613348 - L2 LINE L2 0 3272 3207 509 335 49 33 chr9 39249343 39249588 -78613039 + MIR SINE MIR 8 256 -6 2200 70 0 14 chr9 39249883 39250207 -78612420 + AluY SINE Alu 1 320 0 1341 154 15 50 chr9 39250299 39250583 -78612044 + AluJo SINE Alu 33 307 0 242 322 82 7 chr9 39250654 39250800 -78611827 - L2 LINE L2 -223 3049 2893 190 330 22 22 chr9 39250831 39250922 -78611705 - L2 LINE L2 -498 2816 2726 1511 193 98 0 chr9 39250987 39251303 -78611324 - MER7A DNA MER2_type 0 346 2 1576 153 26 71 chr9 39251417 39251725 -78610902 + AluJb SINE Alu 5 298 -14 24 0 0 0 chr9 39251784 39251808 -78610819 + AT_rich Low_complexity Low_complexity 1 24 0 246 130 19 37 chr9 39252195 39252249 -78610378 + LTR23 LTR ERV1 1 53 -384 21 0 0 0 chr9 39252249 39252270 -78610357 + AT_rich Low_complexity Low_complexity 1 21 0 834 201 40 7 chr9 39252276 39252425 -78610202 - AluJ SINE Alu -36 276 123 55 40 0 0 chr9 39252425 39252501 -78610126 + AT_rich Low_complexity Low_complexity 1 76 0 763 169 0 0 chr9 39252512 39252636 -78609991 - AluJ SINE Alu -185 127 4 821 171 145 104 chr9 39252647 39252785 -78609842 - AluJo SINE Alu -22 290 159 2224 83 3 0 chr9 39252785 39253074 -78609553 - AluSp SINE Alu -23 290 1 821 171 145 104 chr9 39253074 39253204 -78609423 - AluJo SINE Alu -153 159 11 872 171 14 113 chr9 39253217 39253510 -78609117 + LTR23 LTR ERV1 42 305 -132 2283 61 61 0 chr9 39253510 39253804 -78608823 + AluSq SINE Alu 1 312 -1 305 193 0 0 chr9 39253848 39253905 -78608722 + AluJ/FLAM SINE Alu 7 63 -239 750 146 14 7 chr9 39253935 39254079 -78608548 + LTR23 LTR ERV1 293 437 0 194 271 57 14 chr9 39255412 39255482 -78607145 + MIR3 SINE MIR 125 197 -11 224 297 14 0 chr9 39255517 39255591 -78607036 + MIR3 SINE MIR 10 84 -124 268 267 44 33 chr9 39255697 39255787 -78606840 + MIR3 SINE MIR 111 201 -7 2130 104 3 0 chr9 39256972 39257269 -78605358 + AluSg SINE Alu 1 298 -12 337 353 38 23 chr9 39257296 39257429 -78605198 + MIR3 SINE MIR 31 165 -43 426 39 0 0 chr9 39257505 39257557 -78605070 + (TG)n Simple_repeat Simple_repeat 2 53 0 228 339 28 28 chr9 39258753 39258862 -78603765 - L2 LINE L2 0 3272 3164 1820 139 18 0 chr9 39259183 39259464 -78603163 - AluSx SINE Alu -26 286 1 1651 181 0 31 chr9 39259472 39259765 -78602862 - AluJo SINE Alu -20 292 9 2481 63 7 0 chr9 39260302 39260603 -78602024 + AluY SINE Alu 1 303 -8 2321 98 3 3 chr9 39260607 39260914 -78601713 + AluSx SINE Alu 1 307 -5 368 227 128 0 chr9 39261615 39261756 -78600871 - L1MC5 LINE L1 -58 7903 7745 190 200 0 46 chr9 39261757 39261822 -78600805 + (TATG)n Simple_repeat Simple_repeat 2 63 0 872 152 0 0 chr9 39261852 39261984 -78600643 + MER2 DNA MER2_type 4 135 -210 1079 87 54 27 chr9 39261991 39262100 -78600527 + MER30 DNA MER1_type 3 120 -110 2200 83 10 14 chr9 39262100 39262390 -78600237 + AluSg SINE Alu 1 289 -21 1079 87 54 27 chr9 39262390 39262464 -78600163 + MER30 DNA MER1_type 120 191 -39 458 160 76 25 chr9 39262477 39262596 -78600031 + MER2 DNA MER2_type 136 260 -85 1138 178 0 0 chr9 39262615 39262800 -78599827 - AluSq SINE Alu -9 304 120 34 0 0 0 chr9 39262800 39262834 -78599793 + AT_rich Low_complexity Low_complexity 1 34 0 2316 101 0 0 chr9 39262834 39263132 -78599495 - AluSx SINE Alu -14 298 1 947 123 0 0 chr9 39263137 39263267 -78599360 - AluSq SINE Alu -183 130 1 734 212 103 35 chr9 39263340 39263651 -78598976 - L1MC5 LINE L1 -320 7641 7310 2392 100 0 3 chr9 39263958 39264269 -78598358 - AluSp SINE Alu -3 310 1 332 191 11 11 chr9 39264270 39264359 -78598268 - L1MC5 LINE L1 -1876 5932 5844 201 167 42 42 chr9 39264434 39264482 -78598145 + L2 LINE L2 3266 3313 0 23 33 0 0 chr9 39264524 39264554 -78598073 + AT_rich Low_complexity Low_complexity 1 30 0 194 0 0 37 chr9 39265640 39265667 -78596960 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1335 145 31 86 chr9 39265728 39266018 -78596609 - AluJb SINE Alu -38 274 1 650 161 45 0 chr9 39266029 39266167 -78596460 - FLAM_C SINE Alu 0 143 1 21 0 0 0 chr9 39267938 39267959 -78594668 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 39268073 39268094 -78594533 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 39270889 39270925 -78591702 + AT_rich Low_complexity Low_complexity 1 36 0 22 88 0 0 chr9 39273072 39273129 -78589498 + AT_rich Low_complexity Low_complexity 1 57 0 23 54 0 0 chr9 39273418 39273455 -78589172 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr9 39276097 39276122 -78586505 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 39276368 39276397 -78586230 + AT_rich Low_complexity Low_complexity 1 29 0 287 312 72 24 chr9 39277432 39277557 -78585070 - L2 LINE L2 0 3272 3142 2197 167 21 12 chr9 39279905 39280324 -78582303 + L1M2 LINE L1 5299 5721 -591 21 36 0 0 chr9 39281637 39281665 -78580962 + AT_rich Low_complexity Low_complexity 1 28 0 711 71 10 0 chr9 39282442 39282540 -78580087 + HY3 scRNA scRNA 2 100 -1 1693 145 7 35 chr9 39282545 39282827 -78579800 + AluJo SINE Alu 14 287 -25 2142 117 3 0 chr9 39282909 39283209 -78579418 + AluSx SINE Alu 1 301 -11 181 312 0 75 chr9 39283210 39283303 -78579324 - MIR3 SINE MIR -28 180 95 509 179 0 0 chr9 39283511 39283595 -78579032 + AluJb SINE Alu 42 125 -187 1564 217 88 45 chr9 39283860 39284394 -78578233 - L1ME1 LINE L1 -26 6209 5653 913 131 0 8 chr9 39284406 39284536 -78578091 + AluSq/x SINE Alu 1 129 -183 1630 106 0 0 chr9 39284536 39284744 -78577883 + AluSc SINE Alu 1 208 -101 1176 130 12 0 chr9 39284877 39285046 -78577581 + AluSg/x SINE Alu 140 310 0 602 226 99 13 chr9 39285053 39285762 -78576865 - L1ME1 LINE L1 -593 5642 4725 1946 129 0 11 chr9 39285790 39286068 -78576559 + AluSx SINE Alu 1 275 -37 602 26 0 13 chr9 39286072 39286149 -78576478 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 232 91 45 0 chr9 39286186 39286230 -78576397 + A-rich Low_complexity Low_complexity 3 48 0 1133 220 80 19 chr9 39286230 39286494 -78576133 - AluJb SINE Alu -30 282 3 1991 230 133 26 chr9 39286495 39287300 -78575327 - L1ME1 LINE L1 -1483 4732 3842 1757 103 49 0 chr9 39287300 39287563 -78575064 - MER75 DNA T2_type 0 514 239 1954 231 82 40 chr9 39287577 39287745 -78574882 - L1ME1 LINE L1 -2652 3563 3404 2256 73 0 7 chr9 39287745 39288032 -78574595 + AluSg SINE Alu 1 285 -25 1954 231 82 40 chr9 39288032 39288621 -78574006 - L1ME1 LINE L1 -2811 3404 2774 3146 253 72 32 chr9 39288704 39288901 -78573726 - L1ME1 LINE L1 -5148 1248 1060 552 167 167 0 chr9 39288901 39289015 -78573612 - FLAM_C SINE Alu 0 133 1 3146 253 72 32 chr9 39289015 39289984 -78572643 - L1ME1 LINE L1 -5336 1060 35 834 161 0 0 chr9 39290247 39290371 -78572256 + FLAM_C SINE Alu 1 124 -19 301 259 83 19 chr9 39290410 39290518 -78572109 - L2 LINE L2 -19 3294 3180 23 0 0 0 chr9 39290578 39290601 -78572026 + AT_rich Low_complexity Low_complexity 1 23 0 1536 167 23 30 chr9 39291426 39291725 -78570902 + AluJo SINE Alu 16 312 0 233 244 189 22 chr9 39292013 39292103 -78570524 + MER117 DNA MER1_type 2 106 -91 26 0 0 0 chr9 39293054 39293080 -78569547 + AT_rich Low_complexity Low_complexity 1 26 0 1363 142 14 14 chr9 39293090 39293309 -78569318 - AluJo SINE Alu -54 258 40 21 36 0 0 chr9 39295437 39295465 -78567162 + AT_rich Low_complexity Low_complexity 1 28 0 258 339 102 0 chr9 39295534 39295661 -78566966 + MIR SINE MIR 56 195 -67 2048 115 13 26 chr9 39295661 39295966 -78566661 + AluSx SINE Alu 1 301 -11 258 182 127 0 chr9 39295966 39296021 -78566606 - L1MC/D LINE L1 -773 5586 5525 1867 113 84 0 chr9 39296486 39296761 -78565866 + AluSx SINE Alu 1 298 -14 1211 178 21 117 chr9 39297053 39297379 -78565248 + AluYb8 SINE Alu 1 295 -23 23 33 0 0 chr9 39297503 39297533 -78565094 + AT_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr9 39297686 39297713 -78564914 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2237 67 14 0 chr9 39297715 39298000 -78564627 - AluY SINE Alu -20 291 3 233 281 16 8 chr9 39298169 39298290 -78564337 + (TA)n Simple_repeat Simple_repeat 2 123 0 187 206 0 0 chr9 39298582 39298616 -78564011 - MER5B DNA MER1_type -50 128 95 1971 124 18 0 chr9 39298689 39298999 -78563628 + AluSg SINE Alu 1 315 0 2658 142 78 8 chr9 39299268 39299753 -78562874 + L1MC3 LINE L1 7244 7762 -23 275 205 18 27 chr9 39300039 39300151 -78562476 + GA-rich Low_complexity Low_complexity 2 112 0 180 0 0 0 chr9 39300819 39300839 -78561788 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 335 200 0 43 chr9 39301687 39301757 -78560870 + L2 LINE L2 3246 3312 -1 23 33 0 0 chr9 39302695 39302725 -78559902 + AT_rich Low_complexity Low_complexity 1 30 0 778 278 53 29 chr9 39303006 39303348 -78559279 + L1MC3 LINE L1 5653 6002 -1783 * 1822 189 81 10 chr9 39303049 39303467 -78559160 + L1MB7 LINE L1 5694 6141 -43 30 0 0 0 chr9 39303468 39303498 -78559129 + AT_rich Low_complexity Low_complexity 1 30 0 751 157 9 0 chr9 39303498 39303613 -78559014 - FLAM_C SINE Alu -17 116 1 2039 117 3 46 chr9 39303970 39304295 -78558332 - AluSx SINE Alu -1 311 1 738 232 7 0 chr9 39304470 39304621 -78558006 + FAM SINE Alu 1 152 -33 272 192 41 14 chr9 39305177 39305250 -78557377 + MER116 DNA Mariner 6 80 0 583 249 135 21 chr9 39305325 39305518 -78557109 - MIR SINE MIR -42 220 6 297 0 0 0 chr9 39306317 39306350 -78556277 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1564 193 90 44 chr9 39307081 39307516 -78555111 - MLT1C LTR MaLR 0 467 13 243 0 0 0 chr9 39307552 39307579 -78555048 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr9 39307827 39307848 -78554779 + AT_rich Low_complexity Low_complexity 1 21 0 2203 136 3 12 chr9 39308840 39309178 -78553449 - MER1B DNA MER1_type -1 336 2 496 177 73 0 chr9 39309398 39309494 -78553133 + MER2 DNA MER2_type 243 345 0 355 178 39 132 chr9 39309636 39309765 -78552862 - L1MDa LINE L1 -4940 1600 1484 509 152 0 20 chr9 39309766 39309865 -78552762 - AluJ/FRAM SINE Alu 0 312 216 1234 185 0 44 chr9 39309965 39310214 -78552413 + AluJb SINE Alu 75 312 0 199 330 22 22 chr9 39310471 39310562 -78552065 - L2 LINE L2 -498 2816 2726 1824 165 58 0 chr9 39310627 39310955 -78551672 - MER7A DNA MER2_type 0 346 2 246 62 0 0 chr9 39311013 39311045 -78551582 + (T)n Simple_repeat Simple_repeat 1 32 0 1629 169 13 35 chr9 39311083 39311396 -78551231 + AluJb SINE Alu 1 306 -6 333 0 0 0 chr9 39311396 39311433 -78551194 + (TA)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr9 39311453 39311477 -78551150 + AT_rich Low_complexity Low_complexity 1 24 0 871 110 0 0 chr9 39312046 39312164 -78550463 - FLAM_C SINE Alu -15 118 1 808 207 37 24 chr9 39312169 39312333 -78550294 - AluJ SINE Alu -18 294 129 49 32 0 0 chr9 39312333 39312396 -78550231 + AT_rich Low_complexity Low_complexity 1 63 0 332 227 0 0 chr9 39312405 39312471 -78550156 - AluJo SINE Alu -2 300 235 668 242 0 25 chr9 39312471 39312628 -78549999 - AluJo SINE Alu -159 153 1 1071 172 50 38 chr9 39312628 39312889 -78549738 + LTR23 LTR ERV1 42 305 -132 456 168 30 50 chr9 39312889 39312990 -78549637 + AluJ/FLAM SINE Alu 1 99 -213 725 123 34 41 chr9 39312995 39313141 -78549486 + LTR23 LTR ERV1 293 437 0 263 338 61 20 chr9 39314586 39314734 -78547893 + MIR3 SINE MIR 31 184 -24 256 263 25 38 chr9 39314742 39314822 -78547805 + MIR3 SINE MIR 123 201 -7 2336 56 3 3 chr9 39315563 39315850 -78546777 + AluSp SINE Alu 3 289 -24 21 0 0 0 chr9 39316280 39316301 -78546326 + AT_rich Low_complexity Low_complexity 1 21 0 358 349 30 8 chr9 39316311 39316443 -78546184 + MIR3 SINE MIR 31 165 -43 268 369 8 76 chr9 39317724 39317960 -78544667 - L2 LINE L2 0 3272 3053 738 154 42 14 chr9 39318143 39318286 -78544341 - FRAM SINE Alu -11 165 19 828 205 105 10 chr9 39318828 39319028 -78543599 - MER58A DNA MER1_type -2 222 4 207 366 74 14 chr9 39320066 39320282 -78542345 + L2 LINE L2 2157 2385 -929 304 207 126 46 chr9 39322139 39322226 -78540401 - L2 LINE L2 -10 3262 3169 494 200 8 46 chr9 39322289 39322419 -78540208 - FLAM_A SINE Alu -1 141 17 265 267 12 0 chr9 39323379 39323465 -78539162 - L1MC5 LINE L1 -58 7903 7817 1701 151 60 10 chr9 39323477 39323776 -78538851 + MER2 DNA MER2_type 1 314 -31 324 0 0 0 chr9 39323790 39323826 -78538801 + (TG)n Simple_repeat Simple_repeat 1 36 0 686 215 165 30 chr9 39323840 39324203 -78538424 - L1MC5 LINE L1 -240 7721 7310 2293 81 0 3 chr9 39324521 39324854 -78537773 - AluSq SINE Alu 0 332 1 2468 69 0 0 chr9 39324933 39325224 -78537403 - AluSg SINE Alu -19 291 1 2099 122 0 29 chr9 39325379 39325691 -78536936 - AluSx SINE Alu -9 303 1 944 201 77 10 chr9 39326624 39326818 -78535809 - AluJb SINE Alu -5 307 101 359 302 8 31 chr9 39326864 39326993 -78535634 - MIR3 SINE MIR -26 182 57 587 251 82 43 chr9 39327022 39327229 -78535398 - MIR SINE MIR -36 226 12 34 0 0 0 chr9 39327684 39327718 -78534909 + AT_rich Low_complexity Low_complexity 1 34 0 1424 123 5 0 chr9 39327718 39327922 -78534705 - AluSg/x SINE Alu -22 290 86 564 318 80 4 chr9 39328374 39328648 -78533979 - L1ME LINE L1 -303 5818 5524 322 243 75 37 chr9 39328831 39328938 -78533689 - MIR SINE MIR -95 167 57 301 348 28 0 chr9 39329151 39329292 -78533335 - MIR3 SINE MIR -4 204 60 1734 155 23 19 chr9 39329320 39329630 -78532997 + AluJb SINE Alu 1 311 -1 1811 128 12 79 chr9 39329701 39330030 -78532597 - AluJb SINE Alu -3 309 3 192 77 0 0 chr9 39330308 39330334 -78532293 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 193 411 0 0 chr9 39330503 39330559 -78532068 - L2 LINE L2 -88 3184 3129 1755 150 41 7 chr9 39330611 39330904 -78531723 + AluSx SINE Alu 1 303 -9 213 109 18 109 chr9 39331697 39331752 -78530875 + MIR SINE MIR 86 135 -73 1948 110 43 3 chr9 39331857 39332139 -78530488 + AluSg SINE Alu 1 293 -17 389 311 57 11 chr9 39332383 39332560 -78530067 + MIR3 SINE MIR 9 193 -15 233 177 83 146 chr9 39333125 39333188 -78529439 - L1ME3A LINE L1 -218 5952 5895 1990 139 7 7 chr9 39333188 39333497 -78529130 - AluSx SINE Alu -3 309 1 233 177 83 146 chr9 39333497 39333529 -78529098 - L1ME3A LINE L1 -275 5895 5863 1723 185 0 0 chr9 39333729 39334021 -78528606 + AluJb SINE Alu 1 292 -20 256 250 0 0 chr9 39334197 39334253 -78528374 + MIR SINE MIR 97 152 -56 592 228 21 52 chr9 39334627 39334820 -78527807 - MIR3 SINE MIR -6 202 16 381 277 46 39 chr9 39335095 39335225 -78527402 + L2 LINE L2 3142 3272 0 204 286 0 20 chr9 39335789 39335836 -78526791 + MIR SINE MIR 26 71 -137 1071 230 7 68 chr9 39335836 39336029 -78526598 + MIR SINE MIR 2 174 -88 956 206 0 0 chr9 39336029 39336194 -78526433 + FRAM SINE Alu 1 165 -1 1071 230 7 68 chr9 39336194 39336278 -78526349 + MIR SINE MIR 174 262 0 500 283 73 17 chr9 39336260 39336437 -78526190 + L2 LINE L2 2908 3094 -219 * 2149 97 7 32 chr9 39337135 39337445 -78525182 + AluSq SINE Alu 1 302 -11 599 200 8 8 chr9 39337599 39337724 -78524903 + MER63 DNA MER1_type 745 869 -193 1546 174 19 0 chr9 39337732 39337996 -78524631 + AluJo SINE Alu 1 269 -43 216 182 0 0 chr9 39337997 39338041 -78524586 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 497 132 0 0 chr9 39338104 39338172 -78524455 - AluSc SINE Alu -112 197 130 613 217 0 0 chr9 39338172 39338292 -78524335 + MER63 DNA MER1_type 941 1060 0 270 327 59 68 chr9 39338314 39338745 -78523882 + L2 LINE L2 2596 3017 -255 2102 114 0 10 chr9 39338808 39339097 -78523530 - AluSq SINE Alu -27 286 1 454 305 29 29 chr9 39339773 39339947 -78522680 - MIR3 SINE MIR -3 205 32 2024 124 0 0 chr9 39340011 39340328 -78522299 - AluSg SINE Alu 0 317 1 1734 184 96 25 chr9 39340422 39340542 -78522085 + MLT1C LTR MaLR 1 111 -356 2064 144 0 0 chr9 39340542 39340840 -78521787 - AluSx SINE Alu -14 298 1 1734 184 96 25 chr9 39340840 39341155 -78521472 + MLT1C LTR MaLR 111 467 0 986 269 123 19 chr9 39341693 39342068 -78520559 - LTR33 LTR ERVL -6 515 102 1479 199 30 149 chr9 39342071 39342740 -78519887 + L1 LINE L1 4031 4619 -1527 3616 205 40 19 chr9 39342743 39343557 -78519070 + L1MB5 LINE L1 4421 5216 -958 1916 168 0 0 chr9 39343557 39343860 -78518767 + AluJb SINE Alu 1 303 -9 3616 205 40 19 chr9 39343860 39344409 -78518218 + L1MB5 LINE L1 5216 5826 -348 1509 206 31 0 chr9 39344409 39344695 -78517932 + AluJo SINE Alu 11 305 -7 3616 205 40 19 chr9 39344695 39344723 -78517904 + L1MB5 LINE L1 5826 5852 -322 292 256 49 12 chr9 39344823 39344905 -78517722 + L2 LINE L2 2810 2894 -420 27 0 0 0 chr9 39344905 39344932 -78517695 + AT_rich Low_complexity Low_complexity 1 27 0 2392 78 0 0 chr9 39344984 39345277 -78517350 - AluY SINE Alu -18 293 1 508 308 142 19 chr9 39345294 39345612 -78517015 + L2 LINE L2 2911 3267 -46 204 213 0 0 chr9 39345916 39345977 -78516650 + T-rich Low_complexity Low_complexity 1 61 0 2596 52 3 0 chr9 39347684 39347994 -78514633 + AluY SINE Alu 1 311 0 860 171 88 78 chr9 39348022 39348227 -78514400 + MER20 DNA MER1_type 13 219 0 21 57 0 0 chr9 39348247 39348282 -78514345 + AT_rich Low_complexity Low_complexity 1 35 0 249 83 0 0 chr9 39349933 39349969 -78512658 + (TG)n Simple_repeat Simple_repeat 2 37 0 29 78 0 0 chr9 39350553 39350617 -78512010 + AT_rich Low_complexity Low_complexity 1 64 0 2151 106 3 0 chr9 39352330 39352637 -78509990 + AluSq SINE Alu 1 308 0 21 36 0 0 chr9 39352843 39352871 -78509756 + AT_rich Low_complexity Low_complexity 1 28 0 2255 91 7 7 chr9 39354462 39354760 -78507867 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr9 39354880 39354901 -78507726 + (T)n Simple_repeat Simple_repeat 1 21 0 613 146 0 39 chr9 39354914 39355017 -78507610 + AluSc SINE Alu 194 292 -17 782 228 97 10 chr9 39355116 39355322 -78507305 + MER58A DNA MER1_type 1 224 0 2234 112 0 3 chr9 39356196 39356491 -78506136 + AluSx SINE Alu 1 294 -18 185 250 125 0 chr9 39357809 39357865 -78504762 - L2 LINE L2 0 3272 3210 335 269 86 21 chr9 39357885 39358071 -78504556 + L1MB4 LINE L1 4382 4579 -1567 450 0 0 0 chr9 39358266 39358316 -78504311 + (TG)n Simple_repeat Simple_repeat 2 51 0 219 139 0 0 chr9 39358932 39358968 -78503659 + (TATG)n Simple_repeat Simple_repeat 2 37 0 237 186 0 0 chr9 39358992 39359035 -78503592 + L1MB4 LINE L1 5561 5603 -518 349 137 0 0 chr9 39359039 39359090 -78503537 + MER66A LTR ERV1 287 337 -141 2021 202 28 12 chr9 39359113 39359608 -78503019 + L1MB4 LINE L1 5676 6178 -2 910 274 58 66 chr9 39360359 39360845 -78501782 + L1ME1 LINE L1 35 516 -5880 2286 234 97 42 chr9 39361044 39362687 -78499940 + L1ME1 LINE L1 3312 4863 -1372 2333 70 7 3 chr9 39362687 39362985 -78499642 + AluY SINE Alu 1 299 -12 2286 234 97 42 chr9 39362985 39363731 -78498896 + L1ME1 LINE L1 4863 5935 -300 1802 145 36 10 chr9 39363731 39364035 -78498592 - AluSx SINE Alu 0 312 1 2286 234 97 42 chr9 39364035 39364315 -78498312 + L1ME1 LINE L1 5935 6198 -37 1311 181 86 38 chr9 39364315 39364607 -78498020 - AluJb SINE Alu -6 306 1 2171 111 7 3 chr9 39364774 39365072 -78497555 - AluSx SINE Alu -12 300 2 5446 162 99 5 chr9 39365264 39366362 -78496265 - Tigger3b DNA MER2_type -1 1230 29 27 0 0 0 chr9 39366524 39366551 -78496076 + AT_rich Low_complexity Low_complexity 1 27 0 281 229 195 34 chr9 39366566 39366684 -78495943 + L2 LINE L2 3177 3313 0 1784 140 6 40 chr9 39366862 39367184 -78495443 - AluSx SINE Alu -1 311 1 236 222 37 19 chr9 39368246 39368300 -78494327 + MER5B DNA MER1_type 4 58 -120 181 288 27 0 chr9 39368377 39368450 -78494177 + MER5B DNA MER1_type 98 172 -6 811 190 117 6 chr9 39368450 39368629 -78493998 + MER58 DNA MER1_type 1 199 -2221 651 246 0 0 chr9 39369044 39369182 -78493445 - Tigger5 DNA MER2_type 0 2323 2186 2058 106 0 48 chr9 39369795 39370107 -78492520 - AluSx SINE Alu -15 297 1 317 311 135 46 chr9 39370203 39370463 -78492164 - MLT1K LTR MaLR -163 425 143 26 30 0 0 chr9 39370658 39370691 -78491936 + AT_rich Low_complexity Low_complexity 1 33 0 2355 148 22 61 chr9 39370877 39371384 -78491243 - L1MA6 LINE L1 0 6300 5814 380 232 80 14 chr9 39371395 39371533 -78491094 + CT-rich Low_complexity Low_complexity 5 151 0 2142 116 7 0 chr9 39371537 39371831 -78490796 - AluSc SINE Alu -13 296 1 2223 126 42 5 chr9 39371832 39372212 -78490415 - L1MA6 LINE L1 -475 5825 5432 23 0 0 0 chr9 39372276 39372299 -78490328 + AT_rich Low_complexity Low_complexity 1 23 0 2223 58 0 11 chr9 39372362 39372637 -78489990 - AluY SINE Alu -39 272 1 21 36 0 0 chr9 39374818 39374846 -78487781 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr9 39376265 39376287 -78486340 + AT_rich Low_complexity Low_complexity 1 22 0 28 95 0 0 chr9 39376880 39376964 -78485663 + AT_rich Low_complexity Low_complexity 1 84 0 201 147 0 0 chr9 39380188 39380222 -78482405 + (A)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr9 39380374 39380409 -78482218 + AT_rich Low_complexity Low_complexity 1 35 0 203 195 24 24 chr9 39381657 39381698 -78480929 + L2 LINE L2 3032 3072 -200 208 326 0 42 chr9 39381825 39381920 -78480707 - L2 LINE L2 -430 2884 2794 435 298 42 46 chr9 39382085 39382323 -78480304 - L2 LINE L2 -882 2432 2196 324 149 0 15 chr9 39382572 39382639 -78479988 - L1MA8 LINE L1 -3 6288 6223 340 241 98 54 chr9 39382698 39382810 -78479817 - MER8 DNA MER2_type -122 117 1 1670 182 26 2 chr9 39382810 39383152 -78479475 - L1MA8 LINE L1 -28 6143 5871 1435 179 57 37 chr9 39383568 39383885 -78478742 + AluJo SINE Alu 1 323 0 189 369 0 36 chr9 39384346 39384430 -78478197 + L3 LINE CR1 1478 1558 -19 1952 99 68 10 chr9 39385400 39385692 -78476935 - AluSc SINE Alu 0 309 1 422 341 115 10 chr9 39385906 39386114 -78476513 + MIR SINE MIR 2 231 -31 321 267 0 27 chr9 39386147 39386222 -78476405 - MER81 DNA DNA 0 114 42 2209 125 3 3 chr9 39386234 39386545 -78476082 - AluSq SINE Alu -2 311 1 23 33 0 0 chr9 39387113 39387143 -78475484 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr9 39389815 39389846 -78472781 + AT_rich Low_complexity Low_complexity 1 31 0 2166 69 0 11 chr9 39391242 39391517 -78471110 + AluY SINE Alu 1 272 -39 22 0 0 0 chr9 39391581 39391603 -78471024 + AT_rich Low_complexity Low_complexity 1 22 0 664 183 44 0 chr9 39391667 39391804 -78470823 + L1M2 LINE L1 5432 5574 -726 328 188 12 12 chr9 39391966 39392046 -78470581 - HAL1 LINE L1 -296 2211 2132 1990 155 3 0 chr9 39392089 39392392 -78470235 - AluSx SINE Alu -8 304 1 229 200 15 31 chr9 39392393 39392458 -78470169 - HAL1 LINE L1 -464 2043 1980 * 572 262 14 0 chr9 39392457 39392602 -78470025 - HAL1 LINE L1 -939 1568 1422 741 241 0 21 chr9 39392662 39392853 -78469774 - AluJo SINE Alu -14 298 112 1109 127 0 0 chr9 39393016 39393182 -78469445 + AluSg/x SINE Alu 144 309 -1 198 91 0 0 chr9 39393191 39393224 -78469403 + (TA)n Simple_repeat Simple_repeat 1 33 0 676 191 211 10 chr9 39394924 39395118 -78467509 - MER46A DNA MER2_type -3 233 1 2360 174 193 25 chr9 39395249 39395851 -78466776 - MER44D DNA MER2_type -2 703 1 1355 233 38 27 chr9 39396521 39396886 -78465741 + Charlie1a DNA MER1_type 3 371 -1084 2037 187 150 35 chr9 39396902 39397155 -78465472 + Charlie1a DNA MER1_type 793 1016 -1745 2553 130 142 6 chr9 39397155 39397649 -78464978 - MER34B LTR ERV1 -2 563 3 2037 187 150 35 chr9 39397649 39397989 -78464638 + Charlie1a DNA MER1_type 1016 1454 -1 1077 152 21 26 chr9 39397992 39398183 -78464444 + MSTB LTR MaLR 221 410 -16 255 285 0 114 chr9 39398399 39398522 -78464105 + MIR SINE MIR 86 194 -68 229 366 42 7 chr9 39398581 39398710 -78463917 - L2 LINE L2 -731 2583 2447 1933 116 29 32 chr9 39398710 39399021 -78463606 + AluJb SINE Alu 1 310 -2 229 366 42 7 chr9 39399021 39399033 -78463594 - L2 LINE L2 -867 2447 2437 4726 208 114 39 chr9 39399344 39400815 -78461812 - MER45R DNA AcHobo 0 1581 1 242 224 342 0 chr9 39404347 39404499 -78458128 + MIR SINE MIR 47 250 -12 21 0 0 0 chr9 39404537 39404558 -78458069 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr9 39404866 39404889 -78457738 + AT_rich Low_complexity Low_complexity 1 23 0 1852 185 0 0 chr9 39406827 39407119 -78455508 + AluJo SINE Alu 1 292 -20 1371 155 91 38 chr9 39407656 39407795 -78454832 - AluJb SINE Alu -33 279 149 2590 55 0 0 chr9 39407795 39408103 -78454524 - AluY SINE Alu -3 308 1 1371 155 91 38 chr9 39408103 39408228 -78454399 - AluJb SINE Alu -163 149 1 320 276 86 43 chr9 39408330 39408446 -78454181 + L2 LINE L2 3143 3263 -9 2497 60 0 0 chr9 39408663 39408961 -78453666 - AluY SINE Alu -13 298 1 532 324 84 44 chr9 39409174 39409616 -78453011 - L2 LINE L2 -230 3083 2606 1670 165 22 4 chr9 39409616 39409883 -78452744 + AluJb SINE Alu 40 311 -1 532 324 84 44 chr9 39409883 39410053 -78452574 - L2 LINE L2 -707 2606 2444 854 154 256 38 chr9 39410229 39410495 -78452132 + MER33 DNA MER1_type 1 324 0 2217 100 30 0 chr9 39410647 39410946 -78451681 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr9 39411041 39411063 -78451564 + AT_rich Low_complexity Low_complexity 1 22 0 1467 184 124 121 chr9 39411177 39411823 -78450804 + L1MC5 LINE L1 7065 7716 -245 2013 135 0 0 chr9 39411823 39412111 -78450516 - AluSx SINE Alu -24 288 1 1467 184 124 121 chr9 39412111 39412310 -78450317 + L1MC5 LINE L1 7716 7913 -48 251 204 41 0 chr9 39412657 39412706 -78449921 - L1ME3A LINE L1 -75 6095 6045 228 67 0 0 chr9 39412733 39412763 -78449864 + (A)n Simple_repeat Simple_repeat 1 30 0 691 251 17 11 chr9 39413036 39413255 -78449372 - L1ME3 LINE L1 -315 5855 5656 939 174 87 5 chr9 39413262 39413457 -78449170 + MER58A DNA MER1_type 1 211 -13 2504 70 0 0 chr9 39413462 39413763 -78448864 + AluY SINE Alu 1 301 -10 518 249 46 24 chr9 39413938 39414211 -78448416 - L1ME3 LINE L1 -747 5399 5164 295 174 0 0 chr9 39414274 39414320 -78448307 - MER75 DNA T2_type 0 504 459 2280 122 3 0 chr9 39414568 39414879 -78447748 - AluSx SINE Alu 0 312 1 489 296 160 21 chr9 39414884 39415315 -78447312 - L1ME3 LINE L1 -953 5193 4697 981 259 114 42 chr9 39415672 39415874 -78446753 - L1ME LINE L1 -344 5818 5632 2297 98 0 25 chr9 39415874 39416191 -78446436 - AluSq SINE Alu -4 309 1 981 259 114 42 chr9 39416191 39416644 -78445983 - L1ME LINE L1 -530 5632 5128 489 283 133 17 chr9 39416644 39416824 -78445803 + MIR SINE MIR 56 256 -6 234 286 78 0 chr9 39417430 39417507 -78445120 + L1ME LINE L1 347 429 -5987 587 196 0 9 chr9 39417599 39417711 -78444916 + FLAM_C SINE Alu 1 111 -32 211 0 88 0 chr9 39417721 39417755 -78444872 + A-rich Low_complexity Low_complexity 3 39 0 643 329 118 0 chr9 39417755 39418044 -78444583 + L1ME LINE L1 443 765 -5651 933 211 132 103 chr9 39418052 39418251 -78444376 + L1ME LINE L1 902 1094 -5332 210 37 0 0 chr9 39418251 39418278 -78444349 + (TG)n Simple_repeat Simple_repeat 2 28 0 933 211 132 103 chr9 39418278 39418306 -78444321 + L1ME LINE L1 1094 1120 -5306 700 266 0 6 chr9 39418306 39418464 -78444163 - FAM SINE Alu -18 157 1 933 211 132 103 chr9 39418464 39419126 -78443501 + L1ME LINE L1 1120 1829 -4597 663 144 68 25 chr9 39419144 39419262 -78443365 + AluSq/x SINE Alu 3 125 -188 275 270 109 67 chr9 39419278 39419775 -78442852 + L1ME LINE L1 1781 2365 -4061 800 180 0 0 chr9 39419817 39419939 -78442688 + FLAM_C SINE Alu 1 122 -21 23 0 0 0 chr9 39419939 39419962 -78442665 + AT_rich Low_complexity Low_complexity 1 23 0 1097 214 108 77 chr9 39420030 39420115 -78442512 + L1ME LINE L1 2599 2680 -3746 2118 83 47 0 chr9 39420115 39420392 -78442235 + AluY SINE Alu 3 292 -19 1097 214 108 77 chr9 39420392 39420815 -78441812 + L1ME LINE L1 2680 3123 -3303 405 156 52 42 chr9 39420815 39420911 -78441716 + L1ME LINE L1 3067 3163 -3263 576 227 0 0 chr9 39421001 39421111 -78441516 - AluJ SINE Alu -4 308 199 232 249 70 49 chr9 39421111 39421296 -78441331 + L1MEc LINE L1 1823 2011 -4385 1362 136 0 0 chr9 39421362 39421553 -78441074 - AluJ SINE Alu -118 194 4 746 132 62 7 chr9 39422400 39422544 -78440083 + L1MB2 LINE L1 6013 6164 -7 2425 75 0 7 chr9 39422562 39422867 -78439760 + AluY SINE Alu 1 303 -8 269 185 74 13 chr9 39422874 39423066 -78439561 + AluJo SINE Alu 48 290 -12 198 0 0 0 chr9 39423113 39423135 -78439492 + (T)n Simple_repeat Simple_repeat 1 22 0 389 290 69 8 chr9 39426012 39426143 -78436484 - L2 LINE L2 0 3313 3175 401 273 45 80 chr9 39426419 39426620 -78436007 + MIR SINE MIR 5 196 -66 1700 174 47 3 chr9 39426620 39426919 -78435708 + AluJb SINE Alu 1 312 0 401 273 45 80 chr9 39426919 39426981 -78435646 + MIR SINE MIR 196 259 -3 1805 164 3 7 chr9 39427851 39428149 -78434478 + AluJo SINE Alu 1 297 -15 203 171 0 0 chr9 39428163 39428204 -78434423 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 3033 277 106 23 chr9 39428363 39428994 -78433633 + L2 LINE L2 1759 2337 -976 2331 93 0 3 chr9 39428994 39429304 -78433323 - AluSg SINE Alu -1 309 1 3033 277 106 23 chr9 39429304 39430098 -78432529 + L2 LINE L2 2337 3312 -1 4584 191 42 29 chr9 39430139 39430229 -78432398 + Looper DNA T2_type 1 88 -1470 1615 190 0 14 chr9 39430229 39430524 -78432103 + AluJb SINE Alu 1 291 -21 4584 191 42 29 chr9 39430524 39431522 -78431105 + Looper DNA T2_type 88 1103 -455 2268 81 6 28 chr9 39431528 39431848 -78430779 - AluSp SINE Alu 0 313 1 1030 181 167 0 chr9 39431873 39432149 -78430478 + Looper DNA T2_type 1230 1551 -7 606 239 227 27 chr9 39432252 39432657 -78429970 + HAL1 LINE L1 2018 2503 -4 478 134 0 24 chr9 39435876 39435958 -78426669 + MADE1 DNA Mariner 1 80 0 1014 204 83 45 chr9 39436580 39436735 -78425892 - AluJo SINE Alu -38 274 103 423 0 0 0 chr9 39436735 39436782 -78425845 + (TG)n Simple_repeat Simple_repeat 2 48 0 1014 204 83 45 chr9 39436782 39436890 -78425737 - AluJo SINE Alu -209 103 1 226 385 125 0 chr9 39437144 39437248 -78425379 + L2 LINE L2 3147 3263 -9 616 148 10 0 chr9 39438135 39438236 -78424391 - MSTA LTR MaLR -326 102 1 1606 225 28 5 chr9 39438240 39438635 -78423992 + L1ME2 LINE L1 5750 6153 -11 371 269 117 21 chr9 39439210 39439355 -78423272 - MIR3 SINE MIR -6 202 44 1249 206 13 8 chr9 39439708 39439946 -78422681 - MER8 DNA MER2_type 0 239 1 1671 166 7 10 chr9 39441178 39441468 -78421159 + AluJb SINE Alu 9 297 -15 537 262 64 42 chr9 39441735 39441935 -78420692 - MIR SINE MIR -30 232 32 2344 90 3 3 chr9 39442997 39443309 -78419318 + AluSq SINE Alu 1 312 -1 2381 88 3 0 chr9 39443510 39443817 -78418810 - AluSp SINE Alu -5 308 1 2225 93 3 13 chr9 39444226 39444526 -78418101 + AluY SINE Alu 1 297 -14 489 316 66 13 chr9 39444624 39444776 -78417851 + MIR3 SINE MIR 28 187 -21 181 352 0 0 chr9 39444782 39444836 -78417791 - L3 LINE CR1 -147 1430 1377 364 320 34 6 chr9 39444979 39445157 -78417470 - L3 LINE CR1 -291 1286 1104 2132 98 0 3 chr9 39445912 39446223 -78416404 - AluSx SINE Alu 0 310 1 2356 87 3 0 chr9 39446308 39446617 -78416010 - AluSg SINE Alu 0 310 1 2230 110 10 3 chr9 39446630 39446938 -78415689 - AluSx SINE Alu 0 312 3 582 265 96 26 chr9 39447746 39447976 -78414651 - L1ME LINE L1 -481 5640 5395 616 203 0 24 chr9 39448488 39448563 -78414064 + FLAM_A SINE Alu 12 84 -227 2220 93 0 7 chr9 39448563 39448852 -78413775 + AluSc SINE Alu 11 297 -12 616 203 0 24 chr9 39448852 39448899 -78413728 + FLAM_A SINE Alu 84 131 -180 404 384 49 26 chr9 39449190 39449456 -78413171 + L2 LINE L2 357 628 -2686 1909 157 10 0 chr9 39449495 39449801 -78412826 + AluSx SINE Alu 1 309 -3 375 200 55 36 chr9 39450342 39450452 -78412175 - MIR SINE MIR -73 189 78 1350 126 0 45 chr9 39450613 39450835 -78411792 + AluJo SINE Alu 92 303 -9 1996 125 26 3 chr9 39451261 39451565 -78411062 - AluSx SINE Alu -1 311 1 480 348 28 7 chr9 39452141 39452282 -78410345 - L2 LINE L2 0 3272 3129 381 103 0 0 chr9 39452434 39452492 -78410135 - L1MD1 LINE L1 -13 6229 6172 659 172 0 39 chr9 39452492 39452620 -78410007 + FLAM_C SINE Alu 3 125 -18 24 32 0 0 chr9 39452750 39452781 -78409846 + AT_rich Low_complexity Low_complexity 1 31 0 1807 163 142 16 chr9 39453400 39453780 -78408847 + MSTA LTR MaLR 1 428 0 647 194 8 22 chr9 39454486 39454620 -78408007 + FLAM_A SINE Alu 2 133 0 24 0 0 0 chr9 39455339 39455363 -78407264 + AT_rich Low_complexity Low_complexity 1 24 0 1980 130 0 46 chr9 39455894 39456217 -78406410 - AluSx SINE Alu -4 308 1 1098 161 0 0 chr9 39456308 39456482 -78406145 - AluSx SINE Alu -138 174 1 21 0 0 0 chr9 39456726 39456747 -78405880 + AT_rich Low_complexity Low_complexity 1 21 0 184 327 0 18 chr9 39456803 39456858 -78405769 + L3 LINE CR1 1384 1437 -140 249 210 185 70 chr9 39456988 39457145 -78405482 + HAL1 LINE L1 1399 1573 -934 696 214 0 0 chr9 39457289 39457420 -78405207 + FLAM_A SINE Alu 2 132 -1 22 0 0 0 chr9 39457432 39457454 -78405173 + AT_rich Low_complexity Low_complexity 1 22 0 255 274 45 38 chr9 39457709 39457866 -78404761 + L1ME4a LINE L1 5158 5315 -831 287 301 50 81 chr9 39457915 39458080 -78404547 + L1ME4a LINE L1 5663 5832 -289 1774 102 8 4 chr9 39458080 39458325 -78404302 + AluSq SINE Alu 44 289 -24 287 301 50 81 chr9 39458325 39458488 -78404139 + L1ME4a LINE L1 5832 5978 -143 2086 94 0 91 chr9 39458488 39458818 -78403809 + AluSx SINE Alu 1 300 -12 287 301 50 81 chr9 39458818 39458910 -78403717 + L1ME4a LINE L1 5978 6071 -50 2693 250 72 17 chr9 39458915 39459284 -78403343 - L1MC/D LINE L1 -743 5403 5056 1776 162 17 0 chr9 39459284 39459580 -78403047 - AluJb SINE Alu -11 301 1 2693 250 72 17 chr9 39459580 39459932 -78402695 - L1MC/D LINE L1 -1090 5056 4686 2173 122 0 0 chr9 39459932 39460235 -78402392 - AluSx SINE Alu -9 303 1 2693 250 72 17 chr9 39460235 39460518 -78402109 - L1MC/D LINE L1 -1460 4686 4420 2442 84 0 0 chr9 39460834 39461145 -78401482 - AluY SINE Alu 0 311 1 707 179 15 22 chr9 39461152 39461286 -78401341 - FLAM_C SINE Alu 0 133 1 1617 206 3 6 chr9 39461340 39461651 -78400976 + AluJo SINE Alu 1 310 -2 764 110 0 0 chr9 39462118 39462227 -78400400 + HY1 scRNA scRNA 3 111 -1 832 243 108 0 chr9 39462824 39463038 -78399589 - MIR SINE MIR -20 242 6 23 68 0 0 chr9 39469516 39469560 -78393067 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 39470435 39470456 -78392171 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 39473681 39473702 -78388925 + AT_rich Low_complexity Low_complexity 1 21 0 377 194 0 0 chr9 39474797 39474864 -78387763 - U6 snRNA snRNA -1 106 40 475 316 99 28 chr9 39476274 39476486 -78386141 + MIR SINE MIR 7 233 -29 21 0 0 0 chr9 39476894 39476915 -78385712 + AT_rich Low_complexity Low_complexity 1 21 0 185 108 27 0 chr9 39478319 39478356 -78384271 + (CACCC)n Simple_repeat Simple_repeat 4 41 0 2661 244 90 26 chr9 39482349 39482546 -78380081 - L2 LINE L2 0 3313 3130 228 35 0 0 chr9 39482546 39482575 -78380052 + (TTGG)n Simple_repeat Simple_repeat 3 31 0 2661 244 90 26 chr9 39482575 39483660 -78378967 - L2 LINE L2 -183 3130 1941 495 247 0 41 chr9 39483666 39483812 -78378815 - MIR SINE MIR -71 191 52 200 239 60 45 chr9 39484403 39484470 -78378157 + L2 LINE L2 3241 3308 -5 1195 186 57 0 chr9 39484722 39484970 -78377657 - MER58B DNA MER1_type 0 341 80 730 163 0 16 chr9 39484973 39485096 -78377531 + FLAM_C SINE Alu 2 122 -11 335 338 108 37 chr9 39485269 39485814 -78376813 + L2 LINE L2 2732 3313 0 372 288 82 65 chr9 39485896 39486202 -78376425 + L2 LINE L2 1742 2052 -1262 2067 131 28 0 chr9 39486387 39486677 -78375950 + AluSx SINE Alu 1 298 -14 282 29 0 0 chr9 39486902 39486937 -78375690 + (GTTTG)n Simple_repeat Simple_repeat 5 39 0 2252 119 0 0 chr9 39486950 39487244 -78375383 - AluSp SINE Alu -19 294 1 1645 179 28 3 chr9 39487341 39487631 -78374996 + AluJb SINE Alu 1 297 -15 1711 154 3 64 chr9 39487635 39487946 -78374681 + AluJb SINE Alu 1 292 -20 441 100 62 75 chr9 39488337 39488417 -78374210 + MADE1 DNA Mariner 2 80 0 499 322 148 6 chr9 39488749 39489261 -78373366 + L2 LINE L2 1911 2495 -819 2175 103 0 4 chr9 39489285 39489619 -78373008 - AluSg SINE Alu 0 333 1 2385 94 0 0 chr9 39490732 39491029 -78371598 - AluSx SINE Alu -15 297 1 2360 104 0 9 chr9 39491057 39491373 -78371254 - AluSq SINE Alu 0 313 1 238 358 33 8 chr9 39492138 39492258 -78370369 + MIR3 SINE MIR 48 170 -38 1628 158 0 8 chr9 39492295 39492548 -78370079 - AluJb SINE Alu -61 251 1 2213 96 10 29 chr9 39493453 39493766 -78368861 - AluSq SINE Alu -6 307 1 465 244 174 53 chr9 39493861 39494217 -78368410 + L1 LINE L1 3092 3490 -2656 737 204 0 15 chr9 39494217 39494354 -78368273 + AluJo SINE Alu 2 136 -176 24 0 0 0 chr9 39494601 39494625 -78368002 + AT_rich Low_complexity Low_complexity 1 24 0 1029 233 14 5 chr9 39496560 39496775 -78365852 + MER8 DNA MER2_type 23 239 0 416 243 86 7 chr9 39496822 39496962 -78365665 + L1ME4a LINE L1 5969 6119 -2 198 0 0 0 chr9 39499157 39499179 -78363448 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 844 151 0 0 chr9 39499179 39499298 -78363329 - FLAM_C SINE Alu -24 119 1 479 260 148 48 chr9 39500755 39501086 -78361541 - L1ME LINE L1 -313 5808 5445 826 159 48 0 chr9 39501320 39501446 -78361181 + MER20 DNA MER1_type 87 218 -1 2322 99 3 3 chr9 39502066 39502369 -78360258 - AluSg SINE Alu -7 303 1 476 248 64 55 chr9 39502394 39502596 -78360031 - LTR16C LTR ERVL -65 426 223 1000 183 12 95 chr9 39502743 39502984 -78359643 + AluJo SINE Alu 1 221 -91 735 159 0 0 chr9 39503134 39503247 -78359380 - FLAM_C SINE Alu -29 114 2 1893 122 70 0 chr9 39503740 39504027 -78358600 - AluSx SINE Alu -5 307 1 2182 127 0 0 chr9 39504188 39504495 -78358132 + AluSg SINE Alu 1 307 -3 263 240 164 0 chr9 39504687 39504791 -78357836 + MER96 DNA MER1_type? 53 173 -2 198 237 0 0 chr9 39504849 39504887 -78357740 + MIR SINE MIR 40 77 -131 1747 149 3 88 chr9 39504951 39505293 -78357334 + AluSq SINE Alu 1 313 0 2325 76 3 7 chr9 39505632 39505921 -78356706 + AluSx SINE Alu 1 288 -24 30 0 0 0 chr9 39505921 39505951 -78356676 + AT_rich Low_complexity Low_complexity 1 30 0 279 196 128 122 chr9 39506009 39506157 -78356470 - MLT1H LTR MaLR -127 422 274 * 324 204 92 41 chr9 39506129 39506250 -78356377 - MLT1H LTR MaLR -379 170 41 321 257 53 35 chr9 39506599 39506712 -78355915 + MIR3 SINE MIR 45 159 -49 204 40 0 0 chr9 39506789 39506814 -78355813 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1993 142 0 4 chr9 39506814 39507095 -78355532 - AluSx SINE Alu -32 280 1 1803 142 17 37 chr9 39507097 39507393 -78355234 - AluJb SINE Alu -22 290 1 581 311 56 38 chr9 39508170 39508566 -78354061 + MLT1K LTR MaLR 176 578 -10 186 238 0 0 chr9 39508653 39508695 -78353932 + L2 LINE L2 3018 3059 -213 22 88 0 0 chr9 39508774 39508831 -78353796 + AT_rich Low_complexity Low_complexity 1 57 0 266 283 204 0 chr9 39508839 39508952 -78353675 + L2 LINE L2 3133 3268 -4 1753 164 3 35 chr9 39509028 39509340 -78353287 + AluJb SINE Alu 11 312 0 298 243 14 14 chr9 39509346 39509416 -78353211 + AluJ/FLAM SINE Alu 2 71 -231 1721 166 20 20 chr9 39509523 39509825 -78352802 - AluJo SINE Alu -6 306 5 1650 159 9 56 chr9 39509838 39510158 -78352469 - AluJb SINE Alu -7 305 1 311 80 20 0 chr9 39512034 39512084 -78350543 - L1MB2 LINE L1 0 6171 6121 2342 106 0 3 chr9 39512088 39512391 -78350236 - AluSq SINE Alu -11 302 1 2213 102 7 7 chr9 39512605 39512899 -78349728 + AluSg SINE Alu 1 294 -16 1873 170 3 0 chr9 39512910 39513198 -78349429 + AluJo SINE Alu 1 289 -23 25 0 0 0 chr9 39513198 39513223 -78349404 + AT_rich Low_complexity Low_complexity 1 25 0 2129 157 32 19 chr9 39513416 39513791 -78348836 - MLT1B LTR MaLR -10 380 1 1870 134 51 0 chr9 39513820 39513939 -78348688 + AluSx SINE Alu 1 112 -200 477 0 0 0 chr9 39513939 39513992 -78348635 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 1870 134 51 0 chr9 39513992 39514147 -78348480 + AluSx SINE Alu 112 289 -23 789 225 84 47 chr9 39514447 39514830 -78347797 - MLT1J2 LTR MaLR -1 445 31 267 115 173 0 chr9 39514948 39515000 -78347627 - HsTC2 DNA Tc2 -1835 63 3 613 293 117 22 chr9 39515222 39515625 -78347002 + L1ME LINE L1 5267 5707 -414 478 185 68 117 chr9 39515644 39515782 -78346845 - HAL1 LINE L1 0 2507 2383 1777 184 3 3 chr9 39515782 39516086 -78346541 - AluJb SINE Alu -8 304 1 478 185 68 117 chr9 39516086 39516169 -78346458 - HAL1 LINE L1 -124 2383 2297 1538 213 3 0 chr9 39516297 39516598 -78346029 - AluSx SINE Alu -10 302 1 571 269 14 0 chr9 39516663 39516808 -78345819 - HAL1 LINE L1 -939 1568 1422 1058 197 0 0 chr9 39516864 39517047 -78345580 - AluJo SINE Alu -10 302 120 257 0 30 0 chr9 39517106 39517139 -78345488 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1512 202 7 7 chr9 39517257 39517539 -78345088 + AluJo SINE Alu 19 300 -12 1601 189 0 53 chr9 39517716 39517864 -78344763 + AluJo SINE Alu 1 124 -188 2126 94 0 36 chr9 39517864 39518171 -78344456 + AluY SINE Alu 1 296 -15 1601 189 0 53 chr9 39518171 39518344 -78344283 + AluJo SINE Alu 124 305 -7 473 268 45 75 chr9 39518349 39518614 -78344013 + L2 LINE L2 3057 3313 0 867 237 42 78 chr9 39519144 39519398 -78343229 - LTR8 LTR ERV1 -2 689 450 1894 169 0 0 chr9 39519398 39519693 -78342934 - AluSx SINE Alu -7 305 11 867 237 42 78 chr9 39519693 39519797 -78342830 - LTR8 LTR ERV1 -241 450 344 1376 206 4 4 chr9 39519942 39520194 -78342433 - AluJb SINE Alu -60 252 1 718 194 15 110 chr9 39520212 39520475 -78342152 - HAL1 LINE L1 -146 2361 2124 2030 153 3 0 chr9 39520512 39520813 -78341814 - AluSx SINE Alu -10 302 1 233 200 15 31 chr9 39520814 39520879 -78341748 - HAL1 LINE L1 -464 2043 1980 * 553 264 21 0 chr9 39520878 39521022 -78341605 - HAL1 LINE L1 -939 1568 1422 1130 180 0 0 chr9 39521078 39521261 -78341366 - AluJo SINE Alu -10 302 120 257 0 30 0 chr9 39521320 39521353 -78341274 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1512 202 7 7 chr9 39521471 39521753 -78340874 + AluJo SINE Alu 19 300 -12 1726 174 0 53 chr9 39521930 39522078 -78340549 + AluJo SINE Alu 1 124 -188 2296 75 0 33 chr9 39522078 39522384 -78340243 + AluY SINE Alu 1 296 -15 1726 174 0 53 chr9 39522384 39522557 -78340070 + AluJo SINE Alu 124 305 -7 473 268 45 75 chr9 39522562 39522827 -78339800 + L2 LINE L2 3057 3313 0 2736 165 50 88 chr9 39523356 39523607 -78339020 - LTR8 LTR ERV1 -1 690 431 2328 109 3 0 chr9 39523607 39523911 -78338716 - AluSx SINE Alu -4 308 4 2736 165 50 88 chr9 39523911 39524345 -78338282 - LTR8 LTR ERV1 -260 431 31 2348 77 27 7 chr9 39524345 39524644 -78337983 - AluSq SINE Alu -8 305 1 2736 165 50 88 chr9 39524644 39524674 -78337953 - LTR8 LTR ERV1 -660 31 1 253 253 84 0 chr9 39524980 39525063 -78337564 - L1ME LINE L1 -346 5775 5686 1632 195 115 72 chr9 39525069 39525684 -78336943 - LTR48B LTR ERV1 -2 642 1 1829 166 159 86 chr9 39525779 39525828 -78336799 - LTR24C LTR ERV1 -2 633 589 2133 119 0 32 chr9 39525828 39526140 -78336487 + AluSx SINE Alu 1 302 -10 1829 166 159 86 chr9 39526140 39526657 -78335970 - LTR24C LTR ERV1 -46 589 26 1337 69 148 10 chr9 39526827 39527029 -78335598 - MER30 DNA MER1_type 0 230 1 2056 134 7 0 chr9 39527846 39528137 -78334490 - AluJb SINE Alu -19 293 1 1984 55 59 52 chr9 39528348 39528619 -78334008 + AluSx SINE Alu 1 273 -39 283 276 95 0 chr9 39528644 39528749 -78333878 - MIR SINE MIR -36 226 112 388 208 75 45 chr9 39529231 39529385 -78333242 + MIR SINE MIR 30 192 -51 1351 169 4 0 chr9 39529798 39530023 -78332604 - AluJo SINE Alu 0 312 87 751 237 105 62 chr9 39530054 39530425 -78332202 - L2 LINE L2 0 3313 2927 619 284 39 39 chr9 39531947 39532204 -78330423 + LTR16A1 LTR ERVL 201 457 0 204 163 0 61 chr9 39532482 39532531 -78330096 + MIR SINE MIR 102 147 -61 221 323 39 31 chr9 39533003 39533130 -78329497 + MIR SINE MIR 18 145 -63 1455 209 47 23 chr9 39533481 39533825 -78328802 - MSTD LTR MaLR 0 396 45 1077 148 0 0 chr9 39533825 39534000 -78328627 - AluSp SINE Alu 0 311 137 245 152 87 0 chr9 39534004 39534050 -78328577 - MSTD LTR MaLR -378 50 1 251 196 18 143 chr9 39534087 39534199 -78328428 + MIR SINE MIR 85 182 -80 201 316 26 0 chr9 39534591 39534667 -78327960 + MIR SINE MIR 67 144 -118 542 276 36 0 chr9 39534726 39534920 -78327707 + MIR SINE MIR 18 219 -43 340 292 33 16 chr9 39535040 39535184 -78327443 + L2 LINE L2 2909 3050 -222 274 241 131 105 chr9 39535408 39535599 -78327028 - L2 LINE L2 0 3313 3118 1809 123 4 0 chr9 39535609 39535914 -78326713 + AluSx SINE Alu 58 363 0 427 221 151 70 chr9 39536004 39536176 -78326451 + MER5A DNA MER1_type 4 189 0 1006 277 78 0 chr9 39536209 39536505 -78326122 + MER58B DNA MER1_type 23 341 0 199 280 0 67 chr9 39536506 39536581 -78326046 - MIR3 SINE MIR -49 159 90 698 225 46 23 chr9 39536670 39536843 -78325784 + MLT1G3 LTR MaLR 154 330 -200 403 301 49 0 chr9 39537451 39537574 -78325053 + MIR SINE MIR 52 180 -82 574 244 184 5 chr9 39537649 39537850 -78324777 + MIR SINE MIR 13 249 -13 202 209 0 104 chr9 39538089 39538156 -78324471 - MIR SINE MIR -72 136 77 513 265 42 35 chr9 39538615 39538875 -78323752 - MIR SINE MIR 0 262 1 1512 164 56 31 chr9 39539262 39539548 -78323079 - AluJo SINE Alu -19 293 1 35 0 0 0 chr9 39539554 39539589 -78323038 + AT_rich Low_complexity Low_complexity 1 35 0 2346 102 3 6 chr9 39539600 39539913 -78322714 - AluSx SINE Alu 0 312 1 1081 213 28 44 chr9 39540098 39540347 -78322280 - AluJo SINE Alu -67 245 1 1921 146 36 7 chr9 39540417 39540718 -78321909 + AluJb SINE Alu 1 310 -2 1434 282 57 5 chr9 39540731 39541219 -78321408 - L1MC4a LINE L1 -234 5928 5383 1938 151 0 7 chr9 39541220 39541540 -78321087 - AluSx SINE Alu 0 322 5 349 227 0 0 chr9 39541547 39541613 -78321014 + MER2 DNA MER2_type 280 345 0 1439 220 102 9 chr9 39542662 39543085 -78319542 - MLT1C LTR MaLR 0 467 6 285 232 20 71 chr9 39544091 39544190 -78318437 + MIR3 SINE MIR 109 202 -6 944 86 0 0 chr9 39544723 39544851 -78317776 + FLAM_C SINE Alu 1 128 -5 1864 141 58 10 chr9 39544878 39545169 -78317458 + AluJb SINE Alu 1 305 -7 221 263 0 18 chr9 39545396 39545453 -78317174 - L2 LINE L2 0 3272 3217 354 286 31 0 chr9 39545535 39545633 -78316994 - L2 LINE L2 -13 3300 3200 1689 152 40 18 chr9 39546190 39546490 -78316137 + AluJb SINE Alu 1 306 0 200 399 63 14 chr9 39546736 39546879 -78315748 - L2 LINE L2 -214 3058 2909 203 203 203 16 chr9 39546996 39547060 -78315567 + MIR SINE MIR 117 192 -70 1638 177 11 4 chr9 39547155 39547426 -78315201 + AluJo SINE Alu 23 295 -17 2366 95 0 3 chr9 39547512 39547808 -78314819 + AluY SINE Alu 1 295 -16 1642 157 149 0 chr9 39548012 39548355 -78314272 - MLT2C1 LTR ERVL -3 394 1 270 375 59 0 chr9 39548627 39548779 -78313848 + L3 LINE CR1 1345 1505 -72 220 281 96 30 chr9 39549548 39549683 -78312944 - MIR3 SINE MIR -60 148 5 361 270 115 7 chr9 39550173 39550321 -78312306 - MIR3 SINE MIR -28 180 17 250 331 100 36 chr9 39550897 39551256 -78311371 + L2 LINE L2 2852 3233 -39 366 311 8 0 chr9 39551604 39551726 -78310901 + (CA)n Simple_repeat Simple_repeat 1 123 0 764 148 0 63 chr9 39552129 39552271 -78310356 + FLAM_C SINE Alu 1 133 0 225 214 29 43 chr9 39552283 39552353 -78310274 - L2 LINE L2 -4 3309 3241 1799 157 24 3 chr9 39552421 39552708 -78309919 + AluJb SINE Alu 1 293 -19 217 289 31 47 chr9 39552736 39552864 -78309763 - L2 LINE L2 -224 3048 2923 455 174 54 0 chr9 39552869 39552961 -78309666 - L1ME3 LINE L1 -220 5942 5846 473 230 12 79 chr9 39553477 39553498 -78309129 + MER5B DNA MER1_type 25 46 -132 2456 74 7 0 chr9 39553498 39553795 -78308832 - AluY SINE Alu -12 299 1 473 230 12 79 chr9 39553795 39553938 -78308689 + MER5B DNA MER1_type 46 178 0 1430 203 101 33 chr9 39554104 39554469 -78308158 + MLT1B LTR MaLR 1 390 0 233 339 82 0 chr9 39554531 39554702 -78307925 + L1ME4a LINE L1 5632 5816 -305 1669 122 50 72 chr9 39554749 39555068 -78307559 - AluSx SINE Alu 0 312 1 2449 102 0 0 chr9 39555091 39555395 -78307232 + AluSx SINE Alu 1 304 -8 845 213 191 11 chr9 39555450 39555723 -78306904 + L1ME3A LINE L1 5743 6064 -106 336 24 0 0 chr9 39556565 39556606 -78306021 + (TG)n Simple_repeat Simple_repeat 2 42 0 2304 113 6 3 chr9 39556796 39557107 -78305520 + AluSq SINE Alu 1 312 -1 633 126 0 0 chr9 39557125 39557220 -78305407 - FLAM_A SINE Alu -26 116 22 207 217 0 0 chr9 39557327 39557373 -78305254 - MIR SINE MIR -62 146 101 315 205 32 22 chr9 39558430 39558541 -78304086 + (TA)n Simple_repeat Simple_repeat 2 117 -71 2336 105 0 3 chr9 39558541 39558847 -78303780 - AluSx SINE Alu -7 305 1 315 205 32 22 chr9 39558847 39558920 -78303707 + (TA)n Simple_repeat Simple_repeat 117 188 0 238 253 0 42 chr9 39558920 39559015 -78303612 + L1ME4a LINE L1 5926 6016 -105 186 284 126 11 chr9 39559249 39559344 -78303283 + L2 LINE L2 3203 3308 -5 597 184 0 20 chr9 39559344 39559496 -78303131 + GA-rich Low_complexity Low_complexity 3 151 0 2073 115 3 11 chr9 39559686 39559998 -78302629 + AluSx SINE Alu 1 310 0 397 359 94 17 chr9 39559999 39560297 -78302330 - L1ME4a LINE L1 -86 6035 5715 262 273 0 0 chr9 39560584 39560650 -78301977 - MER5C DNA MER1_type -257 67 2 239 359 0 22 chr9 39561104 39561196 -78301431 - L2 LINE L2 -566 2748 2659 606 231 42 97 chr9 39561330 39561673 -78300954 + MLT1H LTR MaLR 120 549 0 250 211 174 18 chr9 39562655 39562764 -78299863 + MIR3 SINE MIR 78 203 -5 345 248 91 16 chr9 39563252 39563373 -78299254 - MIR SINE MIR -52 210 81 864 55 0 0 chr9 39563422 39563532 -78299095 + (TTCC)n Simple_repeat Simple_repeat 3 112 0 654 148 33 8 chr9 39563532 39563649 -78298978 - FLAM_C SINE Alu -12 121 2 888 239 47 63 chr9 39564201 39564366 -78298261 - LTR16A LTR ERVL -54 396 230 2234 117 0 13 chr9 39564366 39564666 -78297961 + AluSx SINE Alu 1 296 -16 888 239 47 63 chr9 39564666 39564881 -78297746 - LTR16A LTR ERVL -220 230 22 180 298 67 19 chr9 39564927 39565031 -78297596 + MIR SINE MIR 143 251 -11 301 274 59 0 chr9 39565105 39565207 -78297420 - L3 LINE CR1 -78 1499 1392 2718 157 11 25 chr9 39565207 39565736 -78296891 - L1MB3 LINE L1 0 6183 5662 2331 94 0 0 chr9 39565746 39566032 -78296595 + AluSx SINE Alu 12 297 -15 654 171 0 24 chr9 39566142 39566265 -78296362 + AluSg/x SINE Alu 177 296 -14 1722 124 23 8 chr9 39566266 39566532 -78296095 - LTR28 LTR ERV1 -750 270 1 436 170 90 0 chr9 39566578 39566678 -78295949 + HsTC2 DNA Tc2 1783 1891 -7 517 177 94 0 chr9 39566706 39566802 -78295825 + FLAM_A SINE Alu 10 114 -28 2031 116 7 26 chr9 39567080 39567383 -78295244 - AluSx SINE Alu -15 297 1 1952 157 0 25 chr9 39567924 39568243 -78294384 - AluJo SINE Alu 0 312 2 564 174 138 0 chr9 39568265 39568374 -78294253 - FLAM_C SINE Alu -18 125 2 2206 88 7 17 chr9 39568378 39568672 -78293955 - AluSp SINE Alu -22 291 1 1800 130 31 15 chr9 39568713 39568818 -78293809 + AluSg SINE Alu 30 132 -178 2511 67 3 0 chr9 39568818 39569115 -78293512 + AluY SINE Alu 1 298 -13 1800 130 31 15 chr9 39569115 39569270 -78293357 + AluSg SINE Alu 132 294 -16 2206 96 3 3 chr9 39569353 39569635 -78292992 - AluSp SINE Alu -16 297 16 3992 162 35 35 chr9 39569661 39570550 -78292077 - Charlie1 DNA MER1_type -259 2502 1614 299 247 82 88 chr9 39570625 39570795 -78291832 + LTR67 LTR ERVL 386 554 -3 1863 160 17 0 chr9 39571303 39571597 -78291030 + AluJb SINE Alu 6 304 -8 189 240 300 10 chr9 39572025 39572125 -78290502 - L2 LINE L2 -5 3308 3180 2154 122 0 3 chr9 39572587 39572881 -78289746 + AluJb SINE Alu 11 303 -9 424 180 30 40 chr9 39572887 39572987 -78289640 + FLAM_C SINE Alu 31 129 -14 4128 141 93 12 chr9 39573098 39573862 -78288765 - LTR1B LTR ERV1 0 826 1 633 313 96 62 chr9 39574819 39575225 -78287402 - MLT1K LTR MaLR -94 494 75 1641 144 39 0 chr9 39575362 39575618 -78287009 + AluJo SINE Alu 15 280 -32 670 276 64 86 chr9 39575842 39576309 -78286318 + LTR16A1 LTR ERVL 1 457 0 243 88 0 0 chr9 39576451 39576485 -78286142 + (A)n Simple_repeat Simple_repeat 1 34 0 3007 154 13 83 chr9 39576590 39576709 -78285918 + L1MB3 LINE L1 5554 5680 -503 1838 156 13 17 chr9 39576709 39577011 -78285616 + AluJo SINE Alu 12 312 0 3007 154 13 83 chr9 39577011 39577028 -78285599 + L1MB3 LINE L1 5680 5697 -486 2331 94 0 0 chr9 39577028 39577314 -78285313 - AluSx SINE Alu -15 297 12 3007 154 13 83 chr9 39577314 39577853 -78284774 + L1MB3 LINE L1 5697 6183 0 290 270 60 0 chr9 39577854 39577954 -78284673 + L3 LINE CR1 1394 1499 -78 180 298 67 19 chr9 39578028 39578132 -78284495 - MIR SINE MIR -11 251 143 888 239 47 63 chr9 39578178 39578393 -78284234 + LTR16A LTR ERVL 22 230 -220 2234 117 0 13 chr9 39578393 39578693 -78283934 - AluSx SINE Alu -16 296 1 888 239 47 63 chr9 39578693 39578858 -78283769 + LTR16A LTR ERVL 230 396 -54 654 148 33 8 chr9 39579410 39579527 -78283100 + FLAM_C SINE Alu 2 122 -7 864 55 0 0 chr9 39579527 39579637 -78282990 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 345 248 91 16 chr9 39579686 39579807 -78282820 + MIR SINE MIR 81 210 -52 250 211 174 18 chr9 39580295 39580404 -78282223 - MIR3 SINE MIR -5 203 78 606 231 42 97 chr9 39581386 39581729 -78280898 - MLT1H LTR MaLR 0 549 120 239 359 0 22 chr9 39581863 39581955 -78280672 + L2 LINE L2 2659 2748 -566 262 273 0 0 chr9 39582409 39582475 -78280152 + MER5C DNA MER1_type 2 67 -257 414 357 88 17 chr9 39582762 39583056 -78279571 + L1ME4a LINE L1 5715 6029 -92 195 42 0 0 chr9 39583060 39583084 -78279543 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2152 108 0 10 chr9 39583086 39583374 -78279253 - AluSx SINE Alu -27 285 1 597 184 0 20 chr9 39583564 39583716 -78278911 + CT-rich Low_complexity Low_complexity 3 151 0 207 242 147 32 chr9 39583716 39583811 -78278816 - L2 LINE L2 -5 3308 3203 231 253 0 42 chr9 39584045 39584140 -78278487 - L1ME4a LINE L1 -105 6016 5926 315 205 32 22 chr9 39584140 39584213 -78278414 + (TA)n Simple_repeat Simple_repeat 2 73 -115 2331 105 0 3 chr9 39584213 39584519 -78278108 + AluSx SINE Alu 1 305 -7 315 205 32 22 chr9 39584519 39584630 -78277997 + (TA)n Simple_repeat Simple_repeat 73 188 0 199 214 0 54 chr9 39585687 39585743 -78276884 + MIR SINE MIR 101 153 -55 675 126 0 0 chr9 39585840 39585935 -78276692 + FLAM_A SINE Alu 22 116 -26 2296 113 6 3 chr9 39585953 39586264 -78276363 - AluSq SINE Alu -1 312 1 336 24 0 0 chr9 39586454 39586495 -78276132 + (CA)n Simple_repeat Simple_repeat 2 42 0 191 242 274 57 chr9 39586824 39586948 -78275679 + L2 LINE L2 2921 3071 -201 821 213 191 11 chr9 39587337 39587610 -78275017 - L1ME3A LINE L1 -106 6064 5743 2299 108 27 0 chr9 39587665 39587961 -78274666 - AluSx SINE Alu -8 304 1 344 278 147 61 chr9 39587961 39588159 -78274468 - L1ME3A LINE L1 -762 5384 5170 411 145 241 0 chr9 39588183 39588266 -78274361 - 5S rRNA rRNA -10 111 9 604 267 77 17 chr9 39588330 39588644 -78273983 - MLT1G3 LTR MaLR -5 590 175 1805 158 6 29 chr9 39589456 39589772 -78272855 - AluJo SINE Alu -3 309 1 1823 143 14 14 chr9 39589786 39590073 -78272554 - AluJo SINE Alu -25 287 1 516 280 70 25 chr9 39590085 39590285 -78272342 - MIR SINE MIR -17 245 37 240 179 75 0 chr9 39591534 39591601 -78271026 + MIR SINE MIR 48 119 -89 284 258 141 8 chr9 39591951 39592079 -78270548 + MIR SINE MIR 6 150 -112 352 230 71 53 chr9 39592506 39592619 -78270008 - MIR SINE MIR -56 206 92 2185 129 0 10 chr9 39592967 39593270 -78269357 + AluSg SINE Alu 1 300 -10 543 237 95 9 chr9 39593562 39593835 -78268792 + MER46C DNA MER2_type 1 338 0 2133 135 0 3 chr9 39593854 39594157 -78268470 + AluJb SINE Alu 1 302 -10 388 251 140 58 chr9 39594421 39594592 -78268035 + MIR3 SINE MIR 17 201 -7 376 272 252 7 chr9 39595533 39595680 -78266947 + L3 LINE CR1 844 1026 -551 220 231 44 44 chr9 39596495 39596586 -78266041 - MER91A DNA MER1_type -48 148 58 500 206 27 98 chr9 39597956 39598140 -78264487 - MIR SINE MIR -36 226 56 2223 133 0 0 chr9 39598697 39598998 -78263629 + AluSg SINE Alu 1 301 -9 601 229 291 3 chr9 39599123 39599473 -78263154 + LTR50 LTR ERVL 2 452 -343 2351 90 0 0 chr9 39599528 39599818 -78262809 - AluSx SINE Alu -7 305 16 849 172 23 29 chr9 39599829 39600003 -78262624 - MER5A DNA MER1_type -6 183 11 1825 168 11 0 chr9 39601279 39601553 -78261074 + AluJb SINE Alu 11 287 -25 753 164 55 0 chr9 39601909 39602037 -78260590 + AluJo SINE Alu 2 136 -176 667 230 0 0 chr9 39602110 39602236 -78260391 - FLAM_A SINE Alu -7 126 1 2034 150 0 3 chr9 39602415 39602709 -78259918 - AluJb SINE Alu -19 293 1 720 244 26 6 chr9 39603333 39603489 -78259138 + FAM SINE Alu 1 159 -16 326 161 11 151 chr9 39603489 39603582 -78259045 + FAM SINE Alu 86 167 -8 866 221 84 67 chr9 39609285 39609367 -78253260 + HAL1 LINE L1 1 80 -2427 2002 100 82 7 chr9 39609367 39609647 -78252980 + AluSx SINE Alu 1 301 -11 866 221 84 67 chr9 39609647 39609921 -78252706 + HAL1 LINE L1 80 363 -2144 1112 174 5 0 chr9 39609936 39609950 -78252677 + AluJb SINE Alu 118 130 -182 1753 152 25 11 chr9 39609950 39610233 -78252394 + AluJb SINE Alu 5 291 -21 1112 174 5 0 chr9 39610233 39610402 -78252225 + AluJb SINE Alu 130 302 -10 357 282 84 69 chr9 39610403 39610498 -78252129 + HAL1 LINE L1 1188 1280 -1227 2325 90 0 7 chr9 39610498 39610799 -78251828 - AluSx SINE Alu -13 299 1 357 282 84 69 chr9 39610799 39610905 -78251722 + HAL1 LINE L1 1280 1392 -1115 1518 222 174 67 chr9 39610910 39611670 -78250957 + HAL1 LINE L1 1480 2347 -160 1788 125 27 30 chr9 39611670 39611967 -78250660 + AluJb SINE Alu 11 306 -6 1518 222 174 67 chr9 39611967 39612077 -78250550 + HAL1 LINE L1 2347 2444 -63 1601 204 0 19 chr9 39612118 39612427 -78250200 + AluSx SINE Alu 1 303 -9 28 0 0 0 chr9 39612436 39612464 -78250163 + AT_rich Low_complexity Low_complexity 1 28 0 1900 124 103 26 chr9 39613342 39613690 -78248937 - THE1C LTR MaLR 0 375 1 842 141 96 0 chr9 39613759 39613894 -78248733 - FRAM SINE Alu -8 168 21 252 276 114 16 chr9 39613895 39614018 -78248609 - MIR SINE MIR -1 261 127 763 209 0 8 chr9 39614173 39614307 -78248320 + FLAM_C SINE Alu 1 133 0 1129 176 95 91 chr9 39614999 39615064 -78247563 - Charlie1b DNA MER1_type -2350 411 348 2373 89 3 0 chr9 39615064 39615368 -78247259 + AluSc SINE Alu 1 305 -4 1129 176 95 91 chr9 39615368 39615402 -78247225 - Charlie1b DNA MER1_type -2413 348 316 808 154 15 0 chr9 39615402 39615532 -78247095 + FLAM_C SINE Alu 1 132 -1 1129 176 95 91 chr9 39615532 39615715 -78246912 - Charlie1b DNA MER1_type -2445 316 135 2060 142 16 7 chr9 39615715 39616018 -78246609 + AluSx SINE Alu 1 306 -6 3254 138 77 31 chr9 39616028 39616613 -78246014 + LTR9 LTR ERV1 1 612 0 1129 176 95 91 chr9 39616613 39616726 -78245901 - Charlie1b DNA MER1_type -2634 127 1 348 164 68 82 chr9 39616852 39616897 -78245730 + HAL1 LINE L1 2272 2316 -191 2265 79 50 0 chr9 39616897 39617177 -78245450 + AluSx SINE Alu 2 295 -17 348 164 68 82 chr9 39617177 39617277 -78245350 + HAL1 LINE L1 2316 2415 -92 1312 154 0 26 chr9 39617281 39617508 -78245119 + AluJb SINE Alu 87 307 -5 2073 130 38 0 chr9 39617584 39617877 -78244750 + AluSx SINE Alu 1 304 -8 1318 198 86 36 chr9 39618021 39618549 -78244078 - LTR8A LTR ERV1 -150 577 1 656 279 79 17 chr9 39618817 39619197 -78243430 - LTR16A1 LTR ERVL 0 457 78 1632 144 39 0 chr9 39619507 39619763 -78242864 - AluJo SINE Alu -32 280 15 541 302 74 68 chr9 39619899 39620237 -78242390 + MLT1K LTR MaLR 75 414 -174 4437 141 93 12 chr9 39621262 39622026 -78240601 + LTR1B LTR ERV1 1 826 0 488 170 30 40 chr9 39622137 39622237 -78240390 - FLAM_C SINE Alu -14 129 31 2148 122 0 3 chr9 39622243 39622537 -78240090 - AluJb SINE Alu -9 303 11 214 240 300 10 chr9 39622999 39623099 -78239528 + L2 LINE L2 3180 3308 -5 1856 160 17 0 chr9 39623527 39623821 -78238806 - AluJb SINE Alu -8 304 6 293 260 96 10 chr9 39624329 39624433 -78238194 - LTR67 LTR ERVL -3 554 442 3991 162 35 35 chr9 39624574 39625463 -78237164 + Charlie1 DNA MER1_type 1614 2502 -259 2200 96 3 3 chr9 39625489 39625771 -78236856 + AluSp SINE Alu 16 297 -16 1153 131 51 11 chr9 39625854 39626009 -78236618 - AluSg/x SINE Alu -16 296 132 2595 51 3 0 chr9 39626009 39626305 -78236322 - AluY SINE Alu -14 297 1 1153 131 51 11 chr9 39626305 39626325 -78236302 - AluSg/x SINE Alu -180 132 114 2102 133 0 17 chr9 39626572 39626734 -78235893 - AluSx SINE Alu -17 295 139 1973 154 0 7 chr9 39626734 39627033 -78235594 - AluSx SINE Alu -15 297 1 2102 133 0 17 chr9 39627033 39627170 -78235457 - AluSx SINE Alu -173 139 1 187 182 18 73 chr9 39627883 39627938 -78234689 - MIR SINE MIR -188 74 23 392 159 14 0 chr9 39628122 39628191 -78234436 - MLT1K LTR MaLR -6 582 513 263 291 0 43 chr9 39628191 39628239 -78234388 - LTR67 LTR ERVL -6 551 440 2298 100 3 3 chr9 39628404 39628703 -78233924 - AluSp SINE Alu -14 299 1 23 33 0 0 chr9 39629104 39629134 -78233493 + AT_rich Low_complexity Low_complexity 1 30 0 286 297 156 23 chr9 39630278 39630406 -78232221 + L2 LINE L2 3119 3263 -9 180 0 0 0 chr9 39631697 39631717 -78230910 + (CA)n Simple_repeat Simple_repeat 2 21 0 2209 100 0 13 chr9 39632350 39632649 -78229978 + AluSx SINE Alu 1 295 -17 276 340 68 17 chr9 39632967 39633202 -78229425 + L1ME LINE L1 5460 5706 -415 2457 78 0 7 chr9 39633357 39633664 -78228963 + AluSg SINE Alu 1 305 -5 349 204 156 90 chr9 39633923 39634090 -78228537 + MER51A LTR ERV1 1 178 -456 1950 67 4 0 chr9 39634090 39634328 -78228299 + AluSq SINE Alu 1 239 -74 755 99 25 0 chr9 39634528 39634649 -78227978 + (CAAGG)n Simple_repeat Simple_repeat 2 125 0 262 200 18 0 chr9 39634649 39634704 -78227923 + MER51A LTR ERV1 177 232 -402 740 153 37 112 chr9 39634705 39634920 -78227707 + MER51A LTR ERV1 342 540 -94 2219 60 0 4 chr9 39634920 39635221 -78227406 + AluY SINE Alu 1 300 0 1114 133 0 0 chr9 39635221 39635394 -78227233 + AluSp SINE Alu 133 305 -8 360 167 44 56 chr9 39635394 39635484 -78227143 + MER51A LTR ERV1 546 634 0 319 309 64 77 chr9 39635521 39635577 -78227050 + L1MC/D LINE L1 5010 5065 -1081 1931 141 7 3 chr9 39635577 39635875 -78226752 - AluSx SINE Alu -13 299 1 319 309 64 77 chr9 39635875 39636051 -78226576 + L1MC/D LINE L1 5065 5239 -907 1692 165 14 3 chr9 39636070 39636355 -78226272 - AluJo SINE Alu -24 288 1 744 292 27 21 chr9 39636380 39636483 -78226144 + L1MC/D LINE L1 5260 5361 -2447 2113 104 0 0 chr9 39636483 39636781 -78225846 + AluSg SINE Alu 13 310 0 744 292 27 21 chr9 39636781 39637009 -78225618 + L1MC/D LINE L1 5361 5593 -2215 435 278 74 9 chr9 39637501 39637717 -78224910 + L1MC/D LINE L1 5592 5821 -1987 1690 121 6 107 chr9 39637726 39638073 -78224554 + AluJb SINE Alu 1 312 0 801 296 26 47 chr9 39638073 39638539 -78224088 + L1MEc LINE L1 23 478 -5918 1761 113 4 8 chr9 39638647 39638904 -78223723 + AluSg SINE Alu 1 256 -54 542 206 53 114 chr9 39639057 39639265 -78223362 - MER58C DNA MER1_type -2205 215 21 1813 187 18 59 chr9 39639265 39639437 -78223190 + MLT1A2 LTR MaLR 1 179 -195 1959 120 0 0 chr9 39639437 39639755 -78222872 + AluSg SINE Alu 6 323 0 1813 187 18 59 chr9 39639755 39639971 -78222656 + MLT1A2 LTR MaLR 179 374 0 542 206 53 114 chr9 39639971 39639990 -78222637 - MER58C DNA MER1_type -2399 21 2 1496 233 35 4 chr9 39639991 39640511 -78222116 + L1MEc LINE L1 2057 2551 -3664 1094 199 76 56 chr9 39640511 39640559 -78222068 - MSTD LTR MaLR -2 394 348 2480 121 86 8 chr9 39640559 39640956 -78221671 - MSTA LTR MaLR 0 428 1 1094 199 76 56 chr9 39640956 39641209 -78221418 - MSTD LTR MaLR -48 348 87 225 154 0 0 chr9 39641209 39641248 -78221379 + (TG)n Simple_repeat Simple_repeat 1 39 0 716 248 0 0 chr9 39641250 39641399 -78221228 - AluJb SINE Alu -31 281 133 207 0 0 0 chr9 39641399 39641422 -78221205 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1028 108 18 24 chr9 39641425 39641592 -78221035 - AluSq SINE Alu -28 285 120 2054 118 3 7 chr9 39641702 39642007 -78220620 + AluSx SINE Alu 1 304 -8 2385 66 0 7 chr9 39644427 39644729 -78217898 - AluY SINE Alu -11 300 1 26 30 0 0 chr9 39645093 39645126 -78217501 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr9 39645541 39645562 -78217065 + AT_rich Low_complexity Low_complexity 1 21 0 2586 72 12 0 chr9 39645744 39646079 -78216548 + L1PA13 LINE L1 5816 6154 -9 189 0 0 0 chr9 39646141 39646162 -78216465 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1396 169 24 0 chr9 39646166 39646415 -78216212 - AluJo SINE Alu -28 284 30 235 235 184 20 chr9 39646427 39646623 -78216004 + L1ME4a LINE L1 5882 6109 -12 657 300 132 66 chr9 39646642 39647265 -78215362 + L3 LINE CR1 839 1502 -75 281 262 19 19 chr9 39647277 39647380 -78215247 + GA-rich Low_complexity Low_complexity 5 107 0 2365 78 3 0 chr9 39647390 39647698 -78214929 + AluSg SINE Alu 1 309 -1 2036 109 0 0 chr9 39647999 39648322 -78214305 + AluSq SINE Alu 1 323 0 468 189 30 8 chr9 39648759 39648871 -78213756 - MER5A DNA MER1_type -71 118 4 227 222 56 0 chr9 39649019 39649073 -78213554 - L2 LINE L2 -1 3271 3215 204 318 80 0 chr9 39649078 39649166 -78213461 - L2 LINE L2 -9 3263 3169 297 179 167 0 chr9 39649169 39649247 -78213380 - L2 LINE L2 0 3313 3223 208 278 0 19 chr9 39649341 39649395 -78213232 + T-rich Low_complexity Low_complexity 4 56 0 631 194 113 88 chr9 39649444 39649521 -78213106 + L1MC4 LINE L1 7612 7686 -356 1508 154 37 60 chr9 39649521 39649820 -78212807 + AluJb SINE Alu 1 292 -20 631 194 113 88 chr9 39649820 39649905 -78212722 + L1MC4 LINE L1 7686 7767 -275 1626 151 58 0 chr9 39649905 39650197 -78212430 - AluJo SINE Alu -2 310 2 631 194 113 88 chr9 39650197 39650316 -78212311 + L1MC4 LINE L1 7767 7901 -141 421 277 141 31 chr9 39650536 39651003 -78211624 + MER115 DNA AcHobo 19 587 -106 195 259 143 45 chr9 39652267 39652379 -78210248 - L2 LINE L2 0 3313 3191 578 100 290 0 chr9 39652381 39652481 -78210146 - MER20 DNA MER1_type 0 219 91 204 336 88 22 chr9 39652629 39652766 -78209861 - L2 LINE L2 -229 3043 2898 292 285 54 9 chr9 39653575 39653705 -78208922 + MIR SINE MIR 12 146 -62 209 255 0 0 chr9 39654079 39654126 -78208501 + (CATCC)n Simple_repeat Simple_repeat 5 51 0 2147 98 10 0 chr9 39654244 39654541 -78208086 + AluSx SINE Alu 1 300 -12 2002 116 0 0 chr9 39654877 39655152 -78207475 - AluSx SINE Alu -37 275 1 453 271 28 0 chr9 39655160 39655267 -78207360 - L2 LINE L2 -5 3308 3199 26 50 0 0 chr9 39655376 39655416 -78207211 + AT_rich Low_complexity Low_complexity 1 40 0 1985 138 0 0 chr9 39656745 39657042 -78205585 - AluSx SINE Alu -15 297 1 526 253 248 5 chr9 39657281 39657483 -78205144 - MIR SINE MIR -10 252 2 517 248 23 8 chr9 39657596 39657725 -78204902 + MIR3 SINE MIR 37 167 -41 278 250 60 0 chr9 39657757 39657841 -78204786 - MER103 DNA DNA -29 137 49 253 298 79 9 chr9 39658015 39658129 -78204498 + MIR3 SINE MIR 83 204 -4 383 244 38 38 chr9 39658400 39658531 -78204096 + MER117 DNA MER1_type 38 168 -29 244 311 0 0 chr9 39658543 39658604 -78204023 + MER117 DNA MER1_type 136 196 -1 268 288 43 43 chr9 39658656 39658795 -78203832 - MIR SINE MIR -61 201 63 778 167 0 38 chr9 39659486 39659618 -78203009 - FLAM_A SINE Alu -3 130 4 1703 178 0 3 chr9 39659731 39660017 -78202610 - AluJo SINE Alu -27 285 1 28 48 0 0 chr9 39661414 39661456 -78201171 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr9 39661654 39661677 -78200950 + (T)n Simple_repeat Simple_repeat 1 23 0 318 296 25 0 chr9 39661814 39661895 -78200732 + MIR3 SINE MIR 104 186 -22 776 254 28 44 chr9 39661934 39662109 -78200518 - MIR SINE MIR 0 262 90 2067 93 7 0 chr9 39662109 39662421 -78200206 + AluSp SINE Alu 2 315 0 776 254 28 44 chr9 39662421 39662496 -78200131 - MIR SINE MIR -172 90 15 1119 195 0 43 chr9 39662509 39662719 -78199908 + MER58A DNA MER1_type 1 201 -23 1165 142 52 0 chr9 39662789 39663000 -78199627 - AluJo SINE Alu -2 310 89 340 291 0 27 chr9 39663423 39663533 -78199094 + MIR3 SINE MIR 97 203 -5 2033 122 19 41 chr9 39663896 39664181 -78198446 - MER7A DNA MER2_type -2693 345 68 1450 167 55 4 chr9 39664181 39664456 -78198171 + AluJo SINE Alu 1 289 -23 2033 122 19 41 chr9 39664456 39664490 -78198137 - MER7A DNA MER2_type -2970 68 35 1894 110 11 14 chr9 39664618 39664941 -78197686 - AluSx SINE Alu 0 322 1 2271 92 0 0 chr9 39664954 39665257 -78197370 - AluSg SINE Alu -7 303 1 2108 105 0 0 chr9 39665264 39665593 -78197034 - AluSx SINE Alu 0 329 1 245 163 47 0 chr9 39666246 39666289 -78196338 - MER103 DNA DNA -79 87 43 191 259 56 0 chr9 39667190 39667244 -78195383 - MIR SINE MIR -71 137 81 339 271 161 8 chr9 39667321 39667439 -78195188 + L3 LINE CR1 1259 1394 -183 1624 167 20 20 chr9 39668406 39668712 -78193915 + AluJo SINE Alu 3 308 -4 2025 92 39 0 chr9 39670476 39670760 -78191867 + AluSq SINE Alu 1 295 -18 483 270 81 13 chr9 39670873 39671052 -78191575 - MIR SINE MIR -54 208 18 336 308 77 53 chr9 39671021 39671229 -78191398 - MIR SINE MIR -47 215 3 * 303 303 88 67 chr9 39671565 39671803 -78190824 + L3b LINE CR1 1197 1439 -144 379 240 128 9 chr9 39672074 39672227 -78190400 - MIR SINE MIR -1 261 30 2058 124 0 0 chr9 39672227 39672526 -78190101 - AluSx SINE Alu -12 300 2 379 240 128 9 chr9 39672526 39672558 -78190069 - MIR SINE MIR -232 30 3 491 205 98 9 chr9 39674000 39674126 -78188501 - MIR SINE MIR -63 145 2 236 200 22 0 chr9 39674165 39674210 -78188417 + L3 LINE CR1 1209 1254 -323 227 194 139 69 chr9 39674600 39674672 -78187955 + MIR SINE MIR 17 93 -115 24 0 0 0 chr9 39674824 39674848 -78187779 + AT_rich Low_complexity Low_complexity 1 24 0 2042 98 0 29 chr9 39675295 39675610 -78187017 + AluSx SINE Alu 1 306 -6 663 264 123 0 chr9 39675626 39675853 -78186774 - L1MCc LINE L1 -5073 1350 1096 384 279 142 15 chr9 39675859 39676063 -78186564 - L1MCc LINE L1 -5380 1043 814 515 193 198 43 chr9 39676231 39676418 -78186209 - L1MCc LINE L1 -5955 468 253 551 122 0 0 chr9 39676479 39676561 -78186066 - AluY SINE Alu -17 294 213 272 172 9 95 chr9 39676787 39676850 -78185777 - Charlie2 DNA MER1_type -517 2345 2278 1193 183 96 37 chr9 39676850 39677058 -78185569 + MER2 DNA MER2_type 4 198 -146 2213 92 3 10 chr9 39677058 39677364 -78185263 - AluSx SINE Alu -8 304 1 2116 127 0 9 chr9 39677374 39677689 -78184938 - AluSx SINE Alu 0 312 1 1193 183 96 37 chr9 39677689 39677791 -78184836 + MER2 DNA MER2_type 206 344 0 272 172 9 95 chr9 39677791 39677843 -78184784 - Charlie2 DNA MER1_type -584 2278 2240 906 273 72 9 chr9 39677868 39678187 -78184440 - Charlie2 DNA MER1_type -2522 340 2 1525 144 0 127 chr9 39678307 39678661 -78183966 + AluJb SINE Alu 1 309 -3 198 219 171 86 chr9 39679216 39679321 -78183306 + MIR3 SINE MIR 86 199 -9 849 248 50 21 chr9 39679737 39679970 -78182657 - MIR SINE MIR 0 262 25 1473 169 0 78 chr9 39680012 39680331 -78182296 + AluJb SINE Alu 1 294 -18 912 119 0 15 chr9 39680517 39680651 -78181976 + FLAM_C SINE Alu 2 133 0 357 325 43 6 chr9 39681653 39681816 -78180811 + MER117 DNA MER1_type 1 169 -28 291 299 77 62 chr9 39681855 39682049 -78180578 - L2 LINE L2 -144 3128 2932 332 311 32 77 chr9 39682428 39682676 -78179951 - L1ME4a LINE L1 -240 5881 5645 308 271 119 95 chr9 39682705 39683000 -78179627 - L2 LINE L2 -20 3252 2951 199 309 27 91 chr9 39683104 39683124 -78179503 - L2 LINE L2 -508 2806 2786 2487 160 72 41 chr9 39683124 39683340 -78179287 + MLT1D LTR MaLR 3 211 -294 2184 82 3 0 chr9 39683340 39683692 -78178935 + AluSq SINE Alu 1 353 0 2487 160 72 41 chr9 39683692 39683962 -78178665 + MLT1D LTR MaLR 211 505 0 199 309 27 91 chr9 39683962 39684051 -78178576 - L2 LINE L2 -528 2786 2704 697 200 0 0 chr9 39684474 39684599 -78178028 + FLAM_A SINE Alu 4 128 -5 1746 123 61 4 chr9 39684651 39684928 -78177699 + AluSx SINE Alu 1 293 -19 737 93 28 19 chr9 39685133 39685241 -78177386 - AluJb SINE Alu -106 206 98 620 297 79 61 chr9 39685674 39686017 -78176610 + L2 LINE L2 2920 3268 -4 350 293 195 43 chr9 39686029 39686445 -78176182 - L2 LINE L2 -8 3305 2827 2335 56 17 13 chr9 39686548 39686850 -78175777 - AluSp SINE Alu -10 303 1 1817 143 3 13 chr9 39686922 39687222 -78175405 - AluJb SINE Alu -15 297 1 260 282 28 92 chr9 39687267 39687409 -78175218 - L2 LINE L2 -50 3222 3090 214 313 167 0 chr9 39687682 39687778 -78174849 + MIR SINE MIR 25 136 -72 798 233 0 11 chr9 39688152 39688328 -78174299 - MIR SINE MIR -48 214 41 27 29 0 0 chr9 39688988 39689022 -78173605 + AT_rich Low_complexity Low_complexity 1 34 0 841 169 6 28 chr9 39689108 39689285 -78173342 - SVA Other Other -783 603 431 420 242 174 0 chr9 39689676 39689825 -78172802 + MER104 DNA Tc2 6 180 0 1279 154 17 137 chr9 39689826 39690176 -78172451 + AluJo SINE Alu 1 308 -4 1655 131 13 67 chr9 39690355 39690669 -78171958 + AluJo SINE Alu 1 297 -15 2450 57 0 0 chr9 39691281 39691581 -78171046 + AluY SINE Alu 1 300 -11 334 244 70 94 chr9 39691595 39691796 -78170831 + L3 LINE CR1 1345 1540 -37 237 330 9 9 chr9 39692497 39692606 -78170021 - L2 LINE L2 -204 3068 2960 3362 96 32 39 chr9 39693122 39693506 -78169121 - L1PB2 LINE L1 -2 6149 5769 2078 97 33 13 chr9 39693506 39693806 -78168821 - AluSp SINE Alu -7 306 1 3362 96 32 39 chr9 39693806 39693955 -78168672 - L1PB2 LINE L1 -382 5769 5620 374 234 136 32 chr9 39694121 39694275 -78168352 + L2 LINE L2 2920 3089 -183 428 237 0 11 chr9 39694783 39694876 -78167751 + MIR SINE MIR 34 125 -83 230 258 106 113 chr9 39694998 39695254 -78167373 + L2 LINE L2 2368 2621 -693 1949 117 10 0 chr9 39695641 39695931 -78166696 - AluSx SINE Alu -14 298 6 230 212 40 10 chr9 39695938 39696037 -78166590 - Charlie7 DNA MER1_type -73 2539 2438 2238 96 0 7 chr9 39696369 39696670 -78165957 - AluSg SINE Alu -11 299 1 522 277 33 33 chr9 39696697 39696910 -78165717 + L2 LINE L2 2148 2360 -954 519 304 39 70 chr9 39696911 39697058 -78165569 + L1MEc LINE L1 36 186 -6210 2024 110 14 0 chr9 39697058 39697348 -78165279 + AluSq SINE Alu 1 294 -19 519 304 39 70 chr9 39697348 39697558 -78165069 + L1MEc LINE L1 186 382 -6014 268 331 83 41 chr9 39697697 39697842 -78164785 - L2 LINE L2 0 3272 3122 1847 99 4 4 chr9 39697921 39698174 -78164453 - AluSx SINE Alu -59 253 1 1641 185 6 31 chr9 39698175 39698500 -78164127 + L1ME2 LINE L1 5558 5874 -290 1467 183 44 4 chr9 39698501 39698619 -78164008 + AluJo SINE Alu 1 113 -200 207 88 0 0 chr9 39698619 39698653 -78163974 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1467 183 44 4 chr9 39698653 39698836 -78163791 + AluJo SINE Alu 113 313 0 747 177 21 136 chr9 39698836 39698870 -78163757 + L1ME2 LINE L1 5949 5985 -179 1717 136 28 11 chr9 39698870 39699157 -78163470 + AluJo SINE Alu 1 292 -20 747 177 21 136 chr9 39699157 39699296 -78163331 + L1ME2 LINE L1 5985 6089 -75 2243 113 0 0 chr9 39699296 39699605 -78163022 + AluSx SINE Alu 1 309 -3 747 177 21 136 chr9 39699605 39699673 -78162954 + L1ME2 LINE L1 6089 6163 -1 2118 95 0 0 chr9 39699945 39700239 -78162388 - AluY SINE Alu -15 296 3 238 317 130 25 chr9 39700240 39700401 -78162226 + L2 LINE L2 2693 2870 -444 259 300 58 17 chr9 39700529 39700649 -78161978 - L1ME3A LINE L1 -37 6133 6009 939 245 65 43 chr9 39700782 39701154 -78161473 - L1MC5 LINE L1 -426 7535 7156 447 216 56 48 chr9 39701220 39701345 -78161282 - L1MC5 LINE L1 -820 7141 7016 2239 108 0 6 chr9 39701364 39701678 -78160949 - AluSx SINE Alu 0 312 1 1914 115 31 0 chr9 39701678 39701965 -78160662 - AluSx SINE Alu -16 296 1 247 236 18 0 chr9 39701965 39702020 -78160607 - L1MC5 LINE L1 -931 7030 6975 * 3135 221 90 36 chr9 39702019 39703522 -78159105 - MSTD-int LTR MaLR -8 1727 2 1143 220 158 42 chr9 39703523 39703595 -78159032 - MSTD LTR MaLR 0 396 334 2214 80 0 29 chr9 39703595 39703909 -78158718 + AluY SINE Alu 1 305 -6 1143 220 158 42 chr9 39703909 39704191 -78158436 - MSTD LTR MaLR -62 334 1 421 229 9 18 chr9 39704340 39704449 -78158178 - L1MC5 LINE L1 -1051 6910 6803 2627 192 29 23 chr9 39704496 39704546 -78158081 - L1MD2 LINE L1 -24 6335 6287 2304 71 0 31 chr9 39704546 39704869 -78157758 + AluSp SINE Alu 1 313 0 2627 192 29 23 chr9 39704869 39705374 -78157253 - L1MD2 LINE L1 -72 6287 5777 1823 172 123 93 chr9 39705397 39705967 -78156660 - L1ME2 LINE L1 -70 6094 5508 819 186 19 6 chr9 39705978 39706139 -78156488 - FRAM SINE Alu -14 162 1 2054 211 60 13 chr9 39706140 39706296 -78156331 - L1ME2 LINE L1 -673 5489 5342 2114 108 0 23 chr9 39706296 39706603 -78156024 - AluSq SINE Alu -13 300 1 2054 211 60 13 chr9 39706603 39707135 -78155492 - L1ME2 LINE L1 -820 5342 4764 1095 205 69 39 chr9 39707153 39707456 -78155171 - L1MD2 LINE L1 -1015 5131 4816 2242 100 0 3 chr9 39707456 39707767 -78154860 - AluSx SINE Alu -2 310 1 1095 205 69 39 chr9 39707767 39707795 -78154832 - L1MD2 LINE L1 -1330 4816 4790 282 259 74 0 chr9 39707779 39707860 -78154767 - L1MC5 LINE L1 -1232 6729 6643 * 2227 78 10 3 chr9 39709736 39710031 -78152596 - AluSp SINE Alu -16 297 1 328 249 124 59 chr9 39710076 39710245 -78152382 - MER5A DNA MER1_type 0 189 10 535 169 173 0 chr9 39710324 39710451 -78152176 + MIR SINE MIR 38 188 -62 1025 334 8 19 chr9 39710476 39710853 -78151774 + MLT1I LTR MaLR 11 383 -26 22 0 0 0 chr9 39711553 39711575 -78151052 + AT_rich Low_complexity Low_complexity 1 22 0 2276 71 0 0 chr9 39711784 39712091 -78150536 + AluY SINE Alu 2 308 0 919 178 0 12 chr9 39712096 39712265 -78150362 - FRAM SINE Alu -8 168 2 233 298 38 0 chr9 39712437 39712525 -78150102 + MIR SINE MIR 65 146 -62 873 192 253 0 chr9 39712574 39712819 -78149808 - L2 LINE L2 -2 3311 3005 285 320 73 13 chr9 39712812 39712962 -78149665 - L2 LINE L2 -1095 2219 2061 * 509 241 69 35 chr9 39713434 39713579 -78149048 + L2 LINE L2 3162 3311 -2 196 330 68 23 chr9 39713695 39713783 -78148844 - L2 LINE L2 -14 3299 3208 2050 124 61 25 chr9 39713881 39714243 -78148384 + THE1C LTR MaLR 1 375 0 9897 101 38 66 chr9 39714243 39715870 -78146757 + THE1C-int LTR MaLR 1 1580 0 1988 116 79 22 chr9 39715870 39716225 -78146402 + THE1C LTR MaLR 1 375 0 311 223 316 14 chr9 39716425 39716564 -78146063 + MER5A DNA MER1_type 9 189 0 278 309 86 7 chr9 39716570 39716709 -78145918 - MIR SINE MIR -106 156 7 * 395 313 23 17 chr9 39716708 39716884 -78145743 - L2 LINE L2 -226 3046 2870 185 270 120 30 chr9 39717082 39717182 -78145445 + MIR SINE MIR 63 171 -91 1198 134 5 20 chr9 39717211 39717412 -78145215 + AluSg/x SINE Alu 110 307 -2 242 266 97 18 chr9 39718014 39718053 -78144574 - MIR SINE MIR -18 244 210 2060 137 0 6 chr9 39718053 39718367 -78144260 - AluJo SINE Alu 0 312 1 242 266 97 18 chr9 39718367 39718440 -78144187 - MIR SINE MIR -52 210 123 1167 87 0 0 chr9 39718603 39718752 -78143875 - AluSq/x SINE Alu -164 149 1 2010 119 0 0 chr9 39719133 39719411 -78143216 - AluSx SINE Alu -25 287 10 998 231 45 121 chr9 39719873 39720607 -78142020 + L1ME3A LINE L1 2466 3174 -3366 844 147 32 26 chr9 39720611 39720767 -78141860 + FRAM SINE Alu 3 159 -17 715 263 56 30 chr9 39720781 39720952 -78141675 + L1ME3A LINE L1 3172 3337 -3203 1980 118 6 16 chr9 39720952 39721266 -78141361 + AluSq SINE Alu 1 311 -2 715 263 56 30 chr9 39721266 39721523 -78141104 + L1ME3A LINE L1 3337 3611 -2929 229 304 85 36 chr9 39721613 39721636 -78140991 + L1ME3A LINE L1 3730 3750 -2790 2298 74 0 3 chr9 39721636 39721933 -78140694 + AluSc SINE Alu 1 296 -13 229 304 85 36 chr9 39721933 39722133 -78140494 + L1ME3A LINE L1 3750 3964 -2576 313 240 67 48 chr9 39722147 39722251 -78140376 + HERV16 LTR ERVL 4801 4906 -90 258 339 61 0 chr9 39722352 39722467 -78140160 + LTR16A1 LTR ERVL 1 122 -335 310 242 108 25 chr9 39722489 39722609 -78140018 + LTR16A1 LTR ERVL 328 457 0 306 0 0 0 chr9 39722638 39722672 -78139955 + (TA)n Simple_repeat Simple_repeat 2 35 0 592 246 40 21 chr9 39722677 39722776 -78139851 + L1ME3A LINE L1 5684 5780 -776 1517 162 65 14 chr9 39722776 39723066 -78139561 + AluJo SINE Alu 1 305 -7 592 246 40 21 chr9 39723066 39723238 -78139389 + L1ME3A LINE L1 5780 5950 -606 579 277 144 0 chr9 39723245 39723530 -78139097 + L1ME3A LINE L1 6019 6344 -220 971 148 41 70 chr9 39725428 39725608 -78137019 - L1MC3 LINE L1 -21 7764 7591 1879 143 0 20 chr9 39725608 39725909 -78136718 - AluJb SINE Alu -17 295 1 971 148 41 70 chr9 39725909 39725972 -78136655 - L1MC3 LINE L1 -194 7591 7528 794 224 86 62 chr9 39726103 39726393 -78136234 + MLT1I LTR MaLR 97 393 -16 371 311 129 34 chr9 39726785 39727049 -78135578 + L2 LINE L2 2977 3265 -7 300 283 150 28 chr9 39727103 39727283 -78135344 - L3 LINE CR1 -258 1319 1118 277 149 43 0 chr9 39728193 39728240 -78134387 + L1MC4 LINE L1 6794 6842 -1200 892 128 67 0 chr9 39728242 39728391 -78134236 + FRAM SINE Alu 1 158 -18 2899 226 185 12 chr9 39728398 39729428 -78133199 + L1MC4 LINE L1 6830 8038 -4 527 315 119 28 chr9 39729467 39729753 -78132874 - L3 LINE CR1 -849 728 417 212 216 118 0 chr9 39729861 39729912 -78132715 - L2 LINE L2 -4 3268 3212 2019 82 54 0 chr9 39730203 39730482 -78132145 + AluSp SINE Alu 1 294 -19 2171 89 3 26 chr9 39731265 39731578 -78131049 + AluSg SINE Alu 1 306 -4 1086 157 34 6 chr9 39731860 39732038 -78130589 - LTR28 LTR ERV1 -837 183 1 360 208 89 10 chr9 39732084 39732185 -78130442 + HsTC2 DNA Tc2 1786 1894 -4 409 240 94 0 chr9 39732213 39732309 -78130318 + FLAM_A SINE Alu 10 114 -28 1882 111 7 27 chr9 39732592 39732890 -78129737 - AluSx SINE Alu -20 292 1 1786 157 0 25 chr9 39733430 39733749 -78128878 - AluJo SINE Alu 0 312 2 594 174 138 0 chr9 39733771 39733880 -78128747 - FLAM_C SINE Alu -18 125 2 909 72 7 36 chr9 39733884 39734022 -78128605 - AluSp/q SINE Alu -22 291 158 1791 208 56 19 chr9 39734055 39734516 -78128111 - L1M1 LINE L1 -4169 3396 2919 251 154 0 19 chr9 39734893 39734945 -78127682 - L1MD3 LINE L1 -2034 5961 5911 2110 107 0 0 chr9 39734945 39735235 -78127392 + AluSx SINE Alu 1 290 -22 27 49 0 0 chr9 39735235 39735276 -78127351 + AT_rich Low_complexity Low_complexity 1 41 0 1152 182 27 9 chr9 39735280 39735505 -78127122 - L1ME1 LINE L1 -251 5915 5687 1365 164 30 112 chr9 39735541 39735846 -78126781 + AluJb SINE Alu 6 285 -27 271 326 63 11 chr9 39735848 39735943 -78126684 - MIR SINE MIR -77 131 32 3464 118 96 2 chr9 39736992 39737586 -78125041 - L1MA4A LINE L1 -198 6105 5456 335 297 8 34 chr9 39737592 39737710 -78124917 + L2 LINE L2 2332 2446 -868 356 277 186 5 chr9 39737718 39737906 -78124721 + L2 LINE L2 2638 2859 -455 753 183 22 33 chr9 39738086 39738266 -78124361 - AluJ SINE Alu -11 301 124 197 380 14 0 chr9 39738331 39738402 -78124225 + L2 LINE L2 3136 3207 -65 235 250 44 0 chr9 39738424 39738492 -78124135 - MIR SINE MIR -9 253 183 201 231 115 0 chr9 39738499 39738551 -78124076 + L2 LINE L2 3214 3271 -1 425 327 15 40 chr9 39738573 39738772 -78123855 - L3 LINE CR1 -134 1443 1250 1921 180 114 47 chr9 39839139 39839629 -78022998 + LTR12 LTR ERV1 192 714 0 474 145 195 101 chr9 39839637 39839796 -78022831 - MER4D LTR ERV1 -623 249 76 2152 123 37 33 chr9 39839809 39840265 -78022362 - pTR5 LTR ERV1 -1238 1200 743 854 143 61 66 chr9 39840265 39840461 -78022166 + MER4E LTR ERV1 157 351 -428 26 64 0 0 chr9 39840947 39840994 -78021633 + AT_rich Low_complexity Low_complexity 1 47 0 815 120 0 0 chr9 39840994 39841111 -78021516 - AluJ SINE Alu -195 117 1 2319 53 13 0 chr9 39841175 39841474 -78021153 - AluY SINE Alu -8 303 1 553 308 193 26 chr9 39841858 39842284 -78020343 + L2 LINE L2 2805 3301 -12 237 214 0 0 chr9 39842323 39842365 -78020262 + L2 LINE L2 3262 3303 -10 296 185 259 0 chr9 39843194 39843275 -78019352 - MIR SINE MIR -111 151 50 2157 109 0 7 chr9 39843282 39843584 -78019043 + AluSq SINE Alu 1 300 -13 382 249 32 74 chr9 39844316 39844452 -78018175 - MIR SINE MIR -65 143 43 281 250 180 40 chr9 39844926 39845026 -78017601 + L2 LINE L2 3155 3268 -4 430 220 129 38 chr9 39847625 39847757 -78014870 + MIR SINE MIR 13 156 -106 2047 97 38 3 chr9 39847763 39848052 -78014575 - AluSx SINE Alu -13 299 1 955 178 18 0 chr9 39848055 39848218 -78014409 - FRAM SINE Alu 0 166 1 351 0 0 0 chr9 39848409 39848448 -78014179 + (A)n Simple_repeat Simple_repeat 1 39 0 201 294 24 71 chr9 39848646 39848731 -78013896 + MIR SINE MIR 168 248 -14 296 209 7 196 chr9 39848955 39849049 -78013578 + MER5A DNA MER1_type 57 113 -76 2090 132 0 0 chr9 39849049 39849352 -78013275 - AluSx SINE Alu -9 303 1 296 209 7 196 chr9 39849352 39849410 -78013217 + MER5A DNA MER1_type 113 180 -9 198 0 0 0 chr9 39849559 39849581 -78013046 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 593 277 94 98 chr9 39849819 39850360 -78012267 - L2 LINE L2 0 3272 2726 378 0 0 0 chr9 39850476 39850518 -78012109 + (TG)n Simple_repeat Simple_repeat 2 43 0 226 243 66 59 chr9 39850742 39850878 -78011749 + L2 LINE L2 2948 3084 -188 344 253 19 67 chr9 39852243 39852375 -78010252 + MER5A DNA MER1_type 6 144 -45 333 286 27 54 chr9 39852259 39852406 -78010221 - MER5A DNA MER1_type -23 166 24 * 215 329 67 13 chr9 39852554 39852703 -78009924 + L2 LINE L2 2681 2837 -477 269 343 60 36 chr9 39853097 39853263 -78009364 + L2 LINE L2 2950 3119 -153 1090 208 45 49 chr9 39853300 39853330 -78009297 - MER63B DNA MER1_type -749 313 284 2043 128 3 0 chr9 39853330 39853634 -78008993 + AluSx SINE Alu 1 305 -7 1090 208 45 49 chr9 39853634 39853911 -78008716 - MER63B DNA MER1_type -778 284 7 2300 95 3 0 chr9 39854122 39854427 -78008200 - AluSq SINE Alu -7 306 1 315 121 0 0 chr9 39855083 39855141 -78007486 + (CA)n Simple_repeat Simple_repeat 1 58 0 926 102 7 7 chr9 39855419 39855556 -78007071 - AluSp/q SINE Alu -12 301 165 235 117 0 33 chr9 39855738 39855798 -78006829 + (TG)n Simple_repeat Simple_repeat 1 58 0 2067 73 4 7 chr9 39855912 39856187 -78006440 + AluY SINE Alu 23 296 -15 244 271 14 14 chr9 39858150 39858220 -78004407 + L2 LINE L2 3188 3257 -15 400 266 25 57 chr9 39859101 39859259 -78003368 + MER5A DNA MER1_type 14 166 -23 318 329 7 48 chr9 39859128 39859274 -78003353 - MER5B DNA MER1_type -30 148 9 * 496 260 96 6 chr9 39859971 39860150 -78002477 + MIR SINE MIR 41 234 -28 260 243 100 0 chr9 39860202 39860272 -78002355 + MIR SINE MIR 67 143 -65 1979 148 0 3 chr9 39860290 39860601 -78002026 - AluSx SINE Alu -2 310 1 360 290 142 6 chr9 39860656 39860825 -78001802 + MIR3 SINE MIR 11 202 -6 332 250 38 12 chr9 39861531 39861611 -78001016 - L1MC4a LINE L1 -1874 5934 5853 385 211 50 55 chr9 39862010 39862149 -78000478 + MIR SINE MIR 20 168 -62 1995 130 7 7 chr9 39862782 39863090 -77999537 - AluSx SINE Alu -4 308 1 342 95 4 13 chr9 39863094 39863160 -77999467 - AluSq/x SINE Alu -169 133 87 2224 104 0 0 chr9 39863211 39863510 -77999117 - AluSx SINE Alu -13 299 1 458 285 30 75 chr9 39863637 39863904 -77998723 + L2 LINE L2 2877 3131 -182 758 255 85 6 chr9 39863914 39864113 -77998514 + MIR SINE MIR 38 250 -12 383 276 55 48 chr9 39864126 39864271 -77998356 + L2 LINE L2 3163 3308 -5 181 225 0 0 chr9 39864536 39864576 -77998051 - L2 LINE L2 -18 3254 3215 270 348 114 23 chr9 39864686 39864726 -77997901 + L2 LINE L2 2639 2674 -640 985 197 161 0 chr9 39864726 39864919 -77997708 + MER58A DNA MER1_type 1 224 0 270 348 114 23 chr9 39864919 39865177 -77997450 + L2 LINE L2 2674 2964 -350 2081 102 0 3 chr9 39865457 39865774 -77996853 - AluSx SINE Alu 0 316 1 195 132 79 0 chr9 39865807 39865845 -77996782 + MIR SINE MIR 212 252 -10 * 203 245 20 20 chr9 39865811 39865860 -77996767 + L2 LINE L2 3222 3270 -2 570 243 115 40 chr9 39866304 39866530 -77996097 + MIR SINE MIR 2 244 -18 301 312 11 11 chr9 39866690 39866783 -77995844 + (TG)n Simple_repeat Simple_repeat 2 94 0 187 328 45 99 chr9 39867053 39867385 -77995242 + L2 LINE L2 2866 3179 -93 240 182 0 23 chr9 39867605 39867649 -77994978 + MIR SINE MIR 87 129 -79 1550 157 11 21 chr9 39868021 39868165 -77994462 - AluSx SINE Alu -35 277 136 2224 93 6 19 chr9 39868165 39868478 -77994149 - AluSx SINE Alu -3 309 1 1550 157 11 21 chr9 39868478 39868613 -77994014 - AluSx SINE Alu -176 136 1 1071 39 0 0 chr9 39869283 39869411 -77993216 + L1PA3 LINE L1 6028 6155 0 1319 132 0 5 chr9 39869577 39869782 -77992845 + AluSg/x SINE Alu 95 298 -12 565 174 20 0 chr9 39869861 39869959 -77992668 - AluSg/x SINE Alu -9 301 202 766 335 99 34 chr9 39870250 39870808 -77991819 - L1ME4a LINE L1 -174 5947 5354 1740 78 0 0 chr9 39871294 39871512 -77991115 - AluSc SINE Alu -21 288 71 2257 61 0 17 chr9 39871512 39871806 -77990821 - AluY SINE Alu -20 291 1 618 96 0 0 chr9 39871806 39871889 -77990738 - AluSc SINE Alu -225 84 2 281 295 116 31 chr9 39872409 39872538 -77990089 + MIR SINE MIR 1 140 -122 302 302 112 17 chr9 39873497 39873613 -77989014 + MIR3 SINE MIR 73 199 -9 2090 131 0 0 chr9 39874509 39874807 -77987820 + AluSx SINE Alu 1 298 -14 408 88 0 0 chr9 39874818 39874875 -77987752 + (CA)n Simple_repeat Simple_repeat 2 58 0 702 305 214 18 chr9 39874893 39875290 -77987337 + L3 LINE CR1 244 718 -859 814 298 83 52 chr9 39875799 39876246 -77986381 + L3 LINE CR1 760 1220 -357 205 270 0 63 chr9 39876312 39876375 -77986252 + L3 LINE CR1 1368 1426 -151 305 342 92 27 chr9 39876794 39876978 -77985649 + MIR SINE MIR 6 201 -61 2049 116 0 3 chr9 39877241 39877612 -77985015 + AluSx SINE Alu 1 370 0 185 206 0 16 chr9 39878489 39878552 -77984075 + (TA)n Simple_repeat Simple_repeat 1 62 0 1226 169 94 12 chr9 39878606 39878860 -77983767 - AluJb SINE Alu -37 275 1 285 316 120 10 chr9 39878886 39879187 -77983440 - L1ME4a LINE L1 -1314 4832 4499 834 301 71 64 chr9 39879253 39879533 -77983094 - L1ME4a LINE L1 -2905 3241 2954 2008 143 0 0 chr9 39879533 39879833 -77982794 + AluSq SINE Alu 1 300 -13 834 301 71 64 chr9 39879833 39880071 -77982556 - L1ME4a LINE L1 -3192 2954 2719 236 308 85 54 chr9 39880361 39880491 -77982136 - MIR SINE MIR -50 212 79 2156 101 24 0 chr9 39881208 39881504 -77981123 - AluSg SINE Alu -7 303 1 1006 127 0 0 chr9 39882604 39882754 -77979873 - AluSg/x SINE Alu 0 312 163 474 172 0 0 chr9 39882754 39882841 -77979786 + FLAM_C SINE Alu 54 140 -3 22 0 0 0 chr9 39882891 39882913 -77979714 + AT_rich Low_complexity Low_complexity 1 22 0 247 360 10 20 chr9 39883352 39883452 -77979175 + L2 LINE L2 3155 3253 -19 199 271 0 71 chr9 39885068 39885138 -77977489 - L2 LINE L2 -212 3060 2996 202 274 20 0 chr9 39885150 39885201 -77977426 + L2 LINE L2 3217 3268 -4 414 57 0 0 chr9 39885203 39885256 -77977371 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 1518 150 68 14 chr9 39886171 39886493 -77976134 - AluSx SINE Alu 0 312 1 1006 184 139 12 chr9 39886675 39886920 -77975707 + AluSg SINE Alu 25 300 -10 491 298 59 97 chr9 39886927 39887507 -77975120 + L1MB7 LINE L1 4106 4663 -1483 582 262 47 37 chr9 39887521 39887712 -77974915 - MIR SINE MIR 0 262 70 1465 148 69 10 chr9 39887765 39888070 -77974557 - Charlie5 DNA MER1_type 0 2624 2302 2766 159 80 19 chr9 39888165 39888731 -77973896 + L1MB8 LINE L1 5578 6177 -1 247 361 62 0 chr9 39889160 39889257 -77973370 + L2 LINE L2 3150 3252 -20 208 361 64 68 chr9 39889714 39889980 -77972647 + L2 LINE L2 3008 3272 0 448 291 206 20 chr9 39890235 39890686 -77971941 + L2 LINE L2 2431 2965 -349 492 99 0 0 chr9 39890705 39890776 -77971851 + (CA)n Simple_repeat Simple_repeat 2 72 0 284 175 35 18 chr9 39892300 39892357 -77970270 + MER4-int LTR ERV1 1099 1156 -5442 248 348 11 0 chr9 39892360 39892452 -77970175 + (TG)n Simple_repeat Simple_repeat 2 94 0 2191 122 0 0 chr9 39892628 39892922 -77969705 + AluSx SINE Alu 5 298 -14 2259 109 10 13 chr9 39893072 39893205 -77969422 + AluSx SINE Alu 1 133 -179 2355 100 0 10 chr9 39893205 39893515 -77969112 + AluSp SINE Alu 1 307 -6 2259 109 10 13 chr9 39893515 39893694 -77968933 + AluSx SINE Alu 133 312 0 256 265 52 102 chr9 39893744 39894069 -77968558 + L1MB7 LINE L1 4779 5087 -1059 2256 104 3 0 chr9 39894122 39894409 -77968218 - AluSg SINE Alu -22 288 1 1810 68 0 17 chr9 39894647 39894884 -77967743 - AluY SINE Alu 0 311 79 305 157 0 6 chr9 39894884 39894948 -77967679 - AluY SINE Alu -257 42 1 520 302 83 84 chr9 39895766 39896424 -77966203 - L2 LINE L2 -10 3303 2650 194 286 101 8 chr9 39896464 39896583 -77966044 - L2 LINE L2 -773 2541 2412 2178 188 11 0 chr9 39896943 39897315 -77965312 + L1MB7 LINE L1 5376 5751 -433 387 0 0 0 chr9 39897326 39897369 -77965258 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 739 120 28 237 chr9 39897389 39897680 -77964947 + L1MB7 LINE L1 5737 5966 -218 826 149 81 7 chr9 39897680 39897828 -77964799 + AluJb SINE Alu 142 300 -12 688 169 8 0 chr9 39897828 39897946 -77964681 + L1MB7 LINE L1 5964 6082 -102 467 160 69 137 chr9 39897990 39898165 -77964462 + MER103 DNA DNA 2 164 -2 192 260 120 0 chr9 39898776 39898826 -77963801 + MIR SINE MIR 86 141 -67 222 105 0 0 chr9 39899234 39899272 -77963355 + (TG)n Simple_repeat Simple_repeat 2 39 0 243 313 0 0 chr9 39899290 39899373 -77963254 + (TG)n Simple_repeat Simple_repeat 1 83 0 197 236 9 0 chr9 39899572 39899678 -77962949 + (TG)n Simple_repeat Simple_repeat 2 108 0 383 79 127 0 chr9 39900511 39900574 -77962053 + L1MB1 LINE L1 6098 6168 0 2210 98 0 11 chr9 39900682 39900995 -77961632 - AluSx SINE Alu 0 312 3 1259 163 34 0 chr9 39901007 39901246 -77961381 - L1MD3 LINE L1 -1 7994 7748 4961 266 91 26 chr9 39901339 39901543 -77961084 + HAL1 LINE L1 407 596 -1911 2041 175 73 5 chr9 39901543 39901914 -77960713 + MSTD LTR MaLR 1 396 0 4961 266 91 26 chr9 39901914 39903640 -77958987 + HAL1 LINE L1 596 2463 -44 753 272 65 30 chr9 39903838 39904176 -77958451 - L1ME4a LINE L1 -237 5884 5535 277 208 10 40 chr9 39904367 39904468 -77958159 + (TA)n Simple_repeat Simple_repeat 1 98 0 23 0 0 0 chr9 39904470 39904493 -77958134 + AT_rich Low_complexity Low_complexity 1 23 0 253 264 33 11 chr9 39904652 39904743 -77957884 - L1MC4a LINE L1 -1876 5932 5840 231 316 35 12 chr9 39904745 39904916 -77957711 - L1M3 LINE L1 -730 5441 5267 415 334 54 61 chr9 39905216 39905608 -77957019 + L3 LINE CR1 1165 1553 -24 416 281 84 57 chr9 39906239 39906502 -77956125 - L3 LINE CR1 -164 1413 1144 2445 56 0 30 chr9 39906952 39907256 -77955371 - AluY SINE Alu -16 295 1 1993 145 3 3 chr9 39907564 39907861 -77954766 + AluJb SINE Alu 1 297 -15 406 367 92 3 chr9 39907864 39908158 -77954469 + L2 LINE L2 2454 2773 -541 481 251 183 6 chr9 39908205 39908380 -77954247 - MIR SINE MIR -9 253 48 194 204 45 114 chr9 39909139 39909227 -77953400 + MIR SINE MIR 108 189 -73 1997 149 11 30 chr9 39909370 39909738 -77952889 + L1MB7 LINE L1 5805 6165 -19 543 191 60 2 chr9 39909885 39910002 -77952625 - MER5A DNA MER1_type -23 166 33 216 250 78 16 chr9 39910014 39910078 -77952549 + MIR3 SINE MIR 12 79 -129 251 289 52 10 chr9 39910321 39910418 -77952209 - MIR SINE MIR -71 191 91 221 200 176 56 chr9 39910752 39910877 -77951750 + L2 LINE L2 3172 3311 -2 2037 143 0 9 chr9 39911374 39911689 -77950938 - AluSx SINE Alu 0 312 1 319 282 43 8 chr9 39912806 39912923 -77949704 + MIR SINE MIR 20 140 -68 1508 203 18 6 chr9 39912930 39913260 -77949367 + L1MB8 LINE L1 5839 6172 -6 616 220 26 63 chr9 39913866 39914057 -77948570 - L2 LINE L2 -1 3312 3129 2440 104 0 0 chr9 39914057 39914365 -77948262 + AluSx SINE Alu 2 309 -3 370 252 148 48 chr9 39914968 39915178 -77947449 + MIR SINE MIR 17 247 -15 234 315 83 50 chr9 39915651 39915832 -77946795 - L2 LINE L2 -49 3223 3037 304 292 64 81 chr9 39917014 39917196 -77945431 + L2 LINE L2 2419 2594 -720 1930 138 14 0 chr9 39917196 39917486 -77945141 - AluSx SINE Alu -14 298 5 304 292 64 81 chr9 39917486 39917649 -77944978 + L2 LINE L2 2594 2758 -556 856 233 4 75 chr9 39917683 39917716 -77944911 + MIR SINE MIR 28 62 -200 2646 94 8 0 chr9 39917716 39918068 -77944559 + THE1A LTR MaLR 1 355 0 12501 81 1 0 chr9 39918068 39919646 -77942981 + THE1A-int LTR MaLR 1 1580 0 2426 78 69 0 chr9 39919646 39919978 -77942649 + THE1A LTR MaLR 1 355 0 856 233 4 75 chr9 39919978 39920195 -77942432 + MIR SINE MIR 59 262 0 1103 132 36 59 chr9 39920396 39920616 -77942011 - L1MB8 LINE L1 0 6178 5964 2233 114 0 0 chr9 39920644 39920941 -77941686 - AluSx SINE Alu -10 302 6 342 351 160 13 chr9 39920956 39921187 -77941440 + L2 LINE L2 3007 3271 -1 254 344 16 16 chr9 39921862 39921987 -77940640 + L2 LINE L2 2661 2785 -529 2500 70 3 6 chr9 39922607 39922920 -77939707 - AluSp SINE Alu -1 312 1 716 205 114 0 chr9 39923149 39923315 -77939312 - MER5A DNA MER1_type 0 189 5 401 287 66 22 chr9 39923497 39923678 -77938949 + MIR3 SINE MIR 12 200 -8 397 217 25 57 chr9 39924645 39924802 -77937825 - MIR SINE MIR -63 199 48 1786 118 24 37 chr9 39924924 39925220 -77937407 - AluSx SINE Alu -8 304 13 1980 152 0 7 chr9 39925387 39925690 -77936937 + AluSx SINE Alu 1 301 -11 225 277 31 0 chr9 39926420 39926485 -77936142 + L2 LINE L2 3234 3300 -13 654 232 108 2 chr9 39927694 39927898 -77934729 - L1MC/D LINE L1 -400 5721 5540 2431 52 13 0 chr9 39928126 39928432 -77934195 + L1PA8 LINE L1 5849 6158 -14 252 77 0 0 chr9 39928432 39928471 -77934156 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2283 134 6 6 chr9 39928735 39929077 -77933550 - MER2 DNA MER2_type -1 343 2 217 302 26 43 chr9 39929150 39929266 -77933361 - L2 LINE L2 -262 3010 2897 211 215 139 51 chr9 39930264 39930343 -77932284 + L2 LINE L2 3137 3222 -50 1590 190 114 43 chr9 39930364 39930703 -77931924 + MSTD LTR MaLR 2 370 -26 1093 77 0 184 chr9 39930703 39930936 -77931691 + 7SK RNA RNA 1 190 -3 1590 190 114 43 chr9 39930936 39930965 -77931662 + MSTD LTR MaLR 370 396 0 343 213 157 9 chr9 39930994 39931102 -77931525 - MIR3 SINE MIR -17 191 68 271 184 40 53 chr9 39931214 39931290 -77931337 - L3 LINE CR1 -246 1331 1257 183 186 47 0 chr9 39931929 39931972 -77930655 - L2 LINE L2 -86 3186 3142 199 305 200 0 chr9 39932344 39932449 -77930178 + L2 LINE L2 2934 3059 -213 183 42 0 0 chr9 39932812 39932836 -77929791 + (T)n Simple_repeat Simple_repeat 1 24 0 1383 218 125 52 chr9 39933548 39933587 -77929040 + MLT1D LTR MaLR 8 43 -462 1643 180 21 18 chr9 39933587 39933892 -77928735 + AluJo SINE Alu 1 306 0 1383 218 125 52 chr9 39933892 39934315 -77928312 + MLT1D LTR MaLR 43 505 0 429 271 28 65 chr9 39934633 39934847 -77927780 + L3 LINE CR1 1210 1415 -162 2399 88 0 3 chr9 39936949 39937255 -77925372 + AluSg SINE Alu 1 305 -5 183 42 0 0 chr9 39937822 39937846 -77924781 + (CAG)n Simple_repeat Simple_repeat 2 25 0 272 308 58 0 chr9 39937992 39938096 -77924531 + L2 LINE L2 2878 2987 -285 878 285 14 2 chr9 39938102 39938352 -77924275 - MIR SINE MIR -10 252 3 577 257 105 40 chr9 39938401 39938705 -77923922 + L2 LINE L2 2989 3312 -1 1147 163 19 47 chr9 39938779 39938994 -77923633 - AluJo SINE Alu -18 294 86 340 309 216 10 chr9 39939441 39939635 -77922992 - MIR SINE MIR 0 262 29 188 308 31 0 chr9 39939928 39939993 -77922634 + L2 LINE L2 3184 3250 -63 276 218 122 70 chr9 39940897 39941053 -77921574 - MIR3 SINE MIR -15 193 30 182 303 43 64 chr9 39941216 39941404 -77921223 - MIR3 SINE MIR -11 197 14 26 0 0 0 chr9 39941827 39941853 -77920774 + GC_rich Low_complexity Low_complexity 1 26 0 27 81 0 0 chr9 39941884 39941946 -77920681 + GC_rich Low_complexity Low_complexity 1 62 0 216 247 37 12 chr9 39942065 39942146 -77920481 - MIR SINE MIR -77 131 49 294 350 111 21 chr9 39942292 39942572 -77920055 + L2 LINE L2 1971 2275 -1039 * 527 308 106 47 chr9 39942568 39942889 -77919738 - L2 LINE L2 -20 3252 2913 416 56 28 14 chr9 39943442 39943513 -77919114 + L1MD2 LINE L1 6287 6358 -1 535 354 113 18 chr9 39943847 39944407 -77918220 + L2 LINE L2 2247 2859 -455 584 285 27 11 chr9 39944463 39944649 -77917978 + MIR SINE MIR 6 194 -68 369 295 31 23 chr9 39944696 39944825 -77917802 - MIR SINE MIR -77 185 56 2351 57 3 10 chr9 39945223 39945524 -77917103 - AluY SINE Alu -12 299 1 247 316 133 10 chr9 39946299 39946397 -77916230 + MIR3 SINE MIR 97 206 -2 193 162 27 0 chr9 39946413 39946450 -77916177 - L2 LINE L2 0 3313 3276 422 310 13 13 chr9 39946708 39946866 -77915761 + MIR3 SINE MIR 48 205 -3 409 248 81 67 chr9 39947928 39948077 -77914550 - MIR SINE MIR -65 197 47 299 246 29 0 chr9 39948617 39948686 -77913941 - MER91A DNA MER1_type 0 190 120 * 487 320 96 6 chr9 39948678 39948834 -77913793 - MER91A DNA MER1_type -22 174 5 607 355 62 48 chr9 39949015 39949561 -77913066 + HAL1 LINE L1 817 1370 -1137 1175 156 13 119 chr9 39949648 39950027 -77912600 + L1MDa LINE L1 2273 2611 -3929 516 204 227 0 chr9 39950149 39950325 -77912302 - MIR SINE MIR -8 254 39 252 247 31 52 chr9 39950334 39950431 -77912196 - L2 LINE L2 -261 3011 2917 206 260 83 10 chr9 39951430 39951526 -77911101 + L2 LINE L2 2393 2495 -819 183 375 12 0 chr9 39951545 39951625 -77911002 + L2 LINE L2 2474 2554 -760 418 219 24 0 chr9 39951684 39951766 -77910861 - L1MC2 LINE L1 -9 6335 6252 486 272 122 0 chr9 39951876 39952056 -77910571 + L2 LINE L2 2855 3056 -257 228 333 13 0 chr9 39952780 39952855 -77909772 - MIR SINE MIR -86 122 47 348 254 169 0 chr9 39952955 39953073 -77909554 - MIR SINE MIR -37 225 88 204 316 90 30 chr9 39953341 39953474 -77909153 + L3 LINE CR1 1264 1404 -173 1856 136 7 39 chr9 39954071 39954380 -77908247 + AluJb SINE Alu 1 299 -13 221 336 122 15 chr9 39954434 39954565 -77908062 - MIR3 SINE MIR -59 149 5 181 318 0 0 chr9 39955019 39955082 -77907545 + L2 LINE L2 2725 2787 -527 190 297 16 0 chr9 39955260 39955324 -77907303 - MIR SINE MIR -63 145 81 555 226 40 8 chr9 39956463 39956587 -77906040 + L2 LINE L2 3185 3312 -1 1287 296 184 9 chr9 39956748 39957749 -77904878 + L2 LINE L2 2038 3219 -94 937 193 6 0 chr9 39959429 39959600 -77903027 + FRAM SINE Alu 1 171 -5 1803 157 7 7 chr9 39959622 39959921 -77902706 + AluJo SINE Alu 1 299 -13 553 304 95 75 chr9 39960233 39960436 -77902191 + L2 LINE L2 2839 3036 -277 2228 99 10 0 chr9 39960436 39960740 -77901887 - AluSx SINE Alu 0 312 6 553 304 95 75 chr9 39960740 39960977 -77901650 + L2 LINE L2 3036 3288 -25 187 219 38 19 chr9 39961575 39961636 -77900991 - MIR SINE MIR -65 143 90 396 244 110 8 chr9 39961883 39962010 -77900617 - MIR3 SINE MIR -26 182 43 405 335 133 21 chr9 39962233 39962615 -77900012 + L3 LINE CR1 1083 1507 -70 218 253 80 18 chr9 39963649 39963763 -77898864 + MIR SINE MIR 35 153 -71 224 279 184 27 chr9 39963909 39964056 -77898571 + MIR3 SINE MIR 39 208 0 244 350 79 43 chr9 39964795 39965163 -77897464 - L2 LINE L2 -5 3267 2887 230 305 37 37 chr9 39965380 39965462 -77897165 - MIR3 SINE MIR -18 190 109 234 349 33 46 chr9 39967097 39967249 -77895378 + MIR SINE MIR 19 168 -40 197 340 90 7 chr9 39967340 39967484 -77895143 + MIR3 SINE MIR 44 199 -9 588 269 130 18 chr9 39968364 39968587 -77894040 + MIR SINE MIR 9 256 -6 199 246 43 29 chr9 39968864 39968933 -77893694 + MIR SINE MIR 83 152 -110 262 326 47 0 chr9 39969099 39969185 -77893442 - MIR3 SINE MIR -24 184 95 282 268 18 89 chr9 39969680 39969792 -77892835 + MIR3 SINE MIR 1 104 -104 294 312 55 22 chr9 39970420 39970579 -77892048 - MIR3 SINE MIR -61 147 8 209 336 164 8 chr9 39971906 39972040 -77890587 - MIR3 SINE MIR -20 188 34 25 0 0 0 chr9 39972485 39972510 -77890117 + AT_rich Low_complexity Low_complexity 1 25 0 195 289 81 40 chr9 39972670 39972843 -77889784 - L2 LINE L2 -74 3198 3019 372 164 16 0 chr9 39973090 39973151 -77889476 + U7 snRNA snRNA 1 62 -1 212 260 40 0 chr9 39973307 39973357 -77889270 + L2 LINE L2 3207 3258 -14 341 287 79 18 chr9 39973449 39973613 -77889014 + L1ME4a LINE L1 5937 6110 -11 1839 80 0 50 chr9 39973615 39973903 -77888724 - AluSx SINE Alu 0 310 36 528 222 179 31 chr9 39974079 39974241 -77888386 + MIR SINE MIR 5 190 -72 1757 136 0 11 chr9 39975265 39975537 -77887090 + AluJo SINE Alu 8 276 -36 574 338 143 7 chr9 39975780 39976205 -77886422 + L3 LINE CR1 1049 1532 -45 292 190 17 0 chr9 39976205 39976263 -77886364 - MER5A DNA MER1_type -3 186 128 239 214 225 34 chr9 39976552 39976641 -77885986 - MIR3 SINE MIR -34 174 112 4433 184 27 40 chr9 39976864 39976944 -77885683 - L1MA9 LINE L1 -29 6283 6204 1462 202 0 11 chr9 39976944 39977221 -77885406 + AluJo SINE Alu 1 274 -38 4433 184 27 40 chr9 39977221 39977555 -77885072 - L1MA9 LINE L1 -108 6204 5867 2289 86 30 0 chr9 39977555 39977859 -77884768 - AluSq SINE Alu 0 313 1 4433 184 27 40 chr9 39977859 39979173 -77883454 - L1MA9 LINE L1 -445 5867 4579 284 272 80 20 chr9 39979554 39979702 -77882925 + MIR3 SINE MIR 94 250 -12 1806 158 13 7 chr9 39979739 39980037 -77882590 - AluJb SINE Alu -12 300 1 183 241 149 0 chr9 39980114 39980201 -77882426 - MIR SINE MIR -78 130 31 216 307 40 0 chr9 39981148 39981223 -77881404 - MIR SINE MIR -70 192 115 584 184 158 53 chr9 39981248 39981438 -77881189 - MER20 DNA MER1_type -9 210 1 188 196 54 36 chr9 39981708 39981764 -77880863 - MIR SINE MIR -59 149 93 197 178 22 0 chr9 39981897 39981942 -77880685 + GA-rich Low_complexity Low_complexity 2 47 0 217 231 70 0 chr9 39982766 39982854 -77879773 + MIR SINE MIR 85 183 -25 249 317 62 0 chr9 39983269 39983402 -77879225 + MIR SINE MIR 37 183 -69 288 130 0 0 chr9 39984700 39984746 -77877881 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 400 329 116 23 chr9 39984970 39985186 -77877441 + MIR SINE MIR 27 262 0 190 291 101 7 chr9 39985957 39986105 -77876522 + MIR3 SINE MIR 26 187 -21 259 247 56 11 chr9 39986698 39986787 -77875840 + MIR SINE MIR 33 125 -83 200 284 45 0 chr9 39986969 39987036 -77875591 - L3 LINE CR1 -2 1575 1506 180 288 0 45 chr9 39987150 39987216 -77875411 + MIR3 SINE MIR 10 72 -136 439 230 171 0 chr9 39989232 39989384 -77873243 - MLT1J LTR MaLR -333 178 1 540 0 0 0 chr9 39989523 39989583 -77873044 + (TTTTG)n Simple_repeat Simple_repeat 2 61 0 207 114 0 0 chr9 39990526 39990561 -77872066 + (TG)n Simple_repeat Simple_repeat 1 35 0 242 289 26 0 chr9 39991132 39991208 -77871419 - MIR SINE MIR -121 141 64 267 146 0 73 chr9 39991327 39991437 -77871190 + (CA)n Simple_repeat Simple_repeat 1 102 0 1586 166 7 10 chr9 39993970 39994265 -77868362 - AluJb SINE Alu -5 307 14 327 254 250 41 chr9 39994497 39994717 -77867910 - L2 LINE L2 -4 3268 3003 199 231 0 0 chr9 39995769 39995821 -77866806 - MIR SINE MIR -80 128 77 2204 93 3 0 chr9 39996523 39996823 -77865804 + AluSx SINE Alu 1 301 -11 2026 109 28 0 chr9 39996844 39997129 -77865498 + AluSx SINE Alu 1 293 -19 448 255 143 24 chr9 39997170 39997425 -77865202 - L1ME4a LINE L1 -57 6064 5841 2232 101 0 0 chr9 39997425 39997723 -77864904 - AluSq SINE Alu -15 298 1 448 255 143 24 chr9 39997723 39997929 -77864698 - L1ME4a LINE L1 -280 5841 5517 284 333 113 0 chr9 39998363 39998513 -77864114 + MIR SINE MIR 61 227 -35 1972 98 0 0 chr9 39998865 39999130 -77863497 + AluSq SINE Alu 1 265 -48 296 208 0 0 chr9 39999342 39999395 -77863232 + L2 LINE L2 3256 3308 -5 1712 149 0 36 chr9 39999512 39999813 -77862814 + AluJb SINE Alu 1 290 -22 2176 113 0 3 chr9 39999815 40000126 -77862501 + AluSx SINE Alu 1 310 -2 233 330 107 9 chr9 40000435 40000547 -77862080 - MIR SINE MIR -61 147 25 349 333 0 0 chr9 40000599 40000695 -77861932 - MER5A DNA MER1_type -44 145 50 205 276 51 51 chr9 40001550 40001648 -77860979 - MER5A DNA MER1_type -6 183 86 510 165 0 51 chr9 40001655 40001831 -77860796 + (TA)n Simple_repeat Simple_repeat 2 168 0 1720 135 38 0 chr9 40001837 40002104 -77860523 - AluJb SINE Alu -23 289 13 268 230 294 48 chr9 40002146 40002272 -77860355 - MER5A DNA MER1_type 0 189 33 490 184 68 142 chr9 40002359 40002549 -77860078 + MER5B DNA MER1_type 3 178 0 277 264 99 99 chr9 40003279 40003612 -77859015 - L2 LINE L2 -5 3267 2935 195 281 51 84 chr9 40003646 40003824 -77858803 - L2 LINE L2 -463 2851 2680 275 315 57 0 chr9 40005084 40005202 -77857425 - MIR SINE MIR -64 144 20 273 208 42 83 chr9 40006238 40006334 -77856293 - MIR3 SINE MIR -14 194 103 2163 93 7 3 chr9 40008390 40008681 -77853946 + AluSx SINE Alu 1 292 -20 1513 153 17 33 chr9 40008700 40009000 -77853627 + AluJb SINE Alu 5 299 -13 1239 122 146 76 chr9 40009151 40009394 -77853233 + AluJo SINE Alu 5 230 -82 1934 120 3 17 chr9 40009394 40009694 -77852933 - AluSc SINE Alu -13 296 1 1239 122 146 76 chr9 40009694 40009721 -77852906 + AluJo SINE Alu 230 254 -58 886 143 0 0 chr9 40009721 40009854 -77852773 + FLAM_C SINE Alu 1 133 0 1239 122 146 76 chr9 40009854 40009870 -77852757 + AluJo SINE Alu 254 312 0 668 325 46 69 chr9 40009915 40010207 -77852420 + L1 LINE L1 3419 3697 -2449 1580 162 62 0 chr9 40010207 40010479 -77852148 + AluJo SINE Alu 14 302 -10 668 325 46 69 chr9 40010479 40010666 -77851961 + L1 LINE L1 3697 3887 -2259 620 300 103 21 chr9 40010676 40010909 -77851718 - MIR SINE MIR -3 259 8 1864 140 3 40 chr9 40011113 40011289 -77851338 - AluSx SINE Alu -2 310 150 2341 81 3 0 chr9 40011289 40011585 -77851042 - AluSp SINE Alu -16 297 1 1864 140 3 40 chr9 40011585 40011730 -77850897 - AluSx SINE Alu -162 150 1 31 18 0 53 chr9 40012172 40012229 -77850398 + AT_rich Low_complexity Low_complexity 1 54 0 535 288 104 69 chr9 40012240 40012504 -77850123 + L1 LINE L1 4110 4396 -1750 866 146 0 0 chr9 40012504 40012634 -77849993 + FLAM_C SINE Alu 1 130 -3 535 288 104 69 chr9 40012634 40012803 -77849824 + L1 LINE L1 4396 4558 -1588 2062 119 0 0 chr9 40013052 40013345 -77849282 - AluSq SINE Alu -20 293 1 1782 149 7 0 chr9 40013765 40014040 -77848587 + AluSx SINE Alu 21 297 -15 1618 183 7 3 chr9 40014361 40014651 -77847976 + AluJo SINE Alu 4 294 -18 3462 94 25 0 chr9 40014735 40015223 -77847404 + L1PA13 LINE L1 5646 6145 -18 2044 101 10 10 chr9 40015234 40015541 -77847086 + AluSq SINE Alu 1 307 -6 1831 145 7 23 chr9 40016681 40016819 -77845808 + AluJb SINE Alu 1 140 -172 2118 124 0 0 chr9 40016819 40017118 -77845509 + AluSx SINE Alu 1 299 -13 1831 145 7 23 chr9 40017118 40017289 -77845338 + AluJb SINE Alu 140 305 -7 5445 41 14 1 chr9 40017993 40018655 -77843972 - SVA Other Other -3 1383 714 742 160 56 7 chr9 40019021 40019148 -77843479 - L1M3 LINE L1 -427 5744 5608 1352 201 35 7 chr9 40019148 40019437 -77843190 - AluJo SINE Alu -15 297 1 742 160 56 7 chr9 40019437 40019453 -77843174 - L1M3 LINE L1 -563 5608 5594 1615 181 3 3 chr9 40019468 40019756 -77842871 - AluJo SINE Alu -24 288 1 329 234 18 81 chr9 40019785 40019896 -77842731 - L1MC4 LINE L1 -1330 6712 6609 249 298 205 44 chr9 40020170 40020375 -77842252 + MIR SINE MIR 5 242 -20 199 293 0 40 chr9 40020527 40020602 -77842025 + L2 LINE L2 3242 3313 0 1089 191 157 45 chr9 40020706 40021082 -77841545 - Charlie1 DNA MER1_type -1 2760 2343 329 275 14 0 chr9 40021081 40021150 -77841477 - Charlie1 DNA MER1_type -2691 70 1 * 2361 64 0 7 chr9 40022526 40022824 -77839803 - AluSg SINE Alu -14 296 1 1164 39 0 59 chr9 40022824 40022977 -77839650 - AluY SINE Alu -167 144 1 401 103 59 0 chr9 40024175 40024243 -77838384 - MER4B-int LTR ERV1 -6686 72 1 868 40 0 0 chr9 40024265 40024365 -77838262 + AluY SINE Alu 96 195 -116 234 0 0 0 chr9 40024490 40024516 -77838111 + (T)n Simple_repeat Simple_repeat 1 26 0 26 30 0 0 chr9 40026431 40026464 -77836163 + AT_rich Low_complexity Low_complexity 1 33 0 2283 82 0 3 chr9 40026714 40027008 -77835619 + AluSx SINE Alu 1 293 -19 1628 150 68 0 chr9 40028205 40028485 -77834142 - AluJb SINE Alu -13 299 1 21 0 0 0 chr9 40028640 40028661 -77833966 + AT_rich Low_complexity Low_complexity 1 21 0 2123 76 7 0 chr9 40029081 40029385 -77833242 - AluSp SINE Alu 0 311 6 357 277 110 46 chr9 40029496 40029534 -77833093 + L2 LINE L2 2652 2686 -586 1788 112 49 7 chr9 40029534 40029821 -77832806 - AluSx SINE Alu -13 299 1 357 277 110 46 chr9 40029821 40030183 -77832444 + L2 LINE L2 2686 3092 -180 542 124 216 0 chr9 40030941 40031038 -77831589 + FLAM_C SINE Alu 1 118 -25 1846 145 0 0 chr9 40031825 40032133 -77830494 - AluJb SINE Alu 0 308 1 819 142 0 57 chr9 40032160 40032301 -77830326 + FLAM_C SINE Alu 1 133 0 1620 165 36 93 chr9 40032468 40032520 -77830107 - MLT1A2 LTR MaLR 0 374 321 2261 126 21 9 chr9 40032520 40032853 -77829774 + MER1B DNA MER1_type 1 337 0 1620 165 36 93 chr9 40032853 40033164 -77829463 - MLT1A2 LTR MaLR -53 321 32 833 136 8 8 chr9 40033982 40034114 -77828513 - FLAM_C SINE Alu -11 132 1 188 260 167 67 chr9 40034512 40034662 -77827965 + L2 LINE L2 3047 3211 -61 631 239 91 37 chr9 40034791 40034854 -77827773 + L1ME2 LINE L1 5894 5952 -212 189 0 0 0 chr9 40034854 40034875 -77827752 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 631 239 91 37 chr9 40034875 40035054 -77827573 + L1ME2 LINE L1 5952 6149 -15 2157 106 0 3 chr9 40035159 40035461 -77827166 + AluSx SINE Alu 1 301 -11 2288 84 0 3 chr9 40035868 40036177 -77826450 + AluY SINE Alu 2 309 -2 1817 114 66 4 chr9 40036553 40036826 -77825801 - AluSx SINE Alu -22 290 1 2110 121 3 0 chr9 40037098 40037405 -77825222 - AluSq SINE Alu -5 308 1 907 152 62 17 chr9 40037621 40037799 -77824828 + MER5A DNA MER1_type 3 188 -1 1493 140 49 62 chr9 40038532 40038840 -77823787 - AluJb SINE Alu -7 305 2 619 227 125 46 chr9 40039133 40039349 -77823278 + MIR SINE MIR 4 236 -26 573 190 45 95 chr9 40039349 40039528 -77823099 + MLT1D LTR MaLR 5 174 -331 819 122 8 15 chr9 40039535 40039666 -77822961 + AluJo SINE Alu 7 136 -176 1515 148 61 0 chr9 40039690 40039940 -77822687 + MLT1D LTR MaLR 252 505 0 23 0 0 0 chr9 40039990 40040013 -77822614 + AT_rich Low_complexity Low_complexity 1 23 0 376 161 99 62 chr9 40040613 40040774 -77821853 + Charlie7 DNA MER1_type 2433 2599 -13 726 189 26 99 chr9 40041378 40041499 -77821128 - MER45A DNA AcHobo -1404 177 73 1958 152 7 10 chr9 40041499 40041808 -77820819 - AluJo SINE Alu -4 308 1 726 189 26 99 chr9 40041808 40041877 -77820750 - MER45A DNA AcHobo -1508 73 1 209 299 45 30 chr9 40041927 40041994 -77820633 + L2 LINE L2 3200 3267 -5 650 203 49 0 chr9 40042190 40042313 -77820314 - L2 LINE L2 -1 3312 3184 21 36 0 0 chr9 40042558 40042586 -77820041 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr9 40043377 40043398 -77819229 + AT_rich Low_complexity Low_complexity 1 21 0 540 248 100 61 chr9 40044837 40045067 -77817560 + MIR SINE MIR 8 246 -16 2119 112 0 7 chr9 40045242 40045557 -77817070 - AluSx SINE Alu 0 315 3 2041 138 0 0 chr9 40045561 40045851 -77816776 - AluJb SINE Alu -18 294 5 501 258 126 47 chr9 40046257 40046447 -77816180 + MIR3 SINE MIR 3 207 -1 2487 76 0 0 chr9 40046509 40046813 -77815814 - AluSg SINE Alu -6 304 1 395 297 50 22 chr9 40046845 40047027 -77815600 + MER5A DNA MER1_type 3 189 0 248 273 0 0 chr9 40048005 40048060 -77814567 + GA-rich Low_complexity Low_complexity 4 58 0 243 0 0 0 chr9 40049339 40049366 -77813261 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 186 222 0 22 chr9 40052178 40052223 -77810404 - MIR SINE MIR -51 211 168 670 141 0 62 chr9 40053062 40053190 -77809437 - FLAM_A SINE Alu -9 124 5 1890 172 0 7 chr9 40053682 40053990 -77808637 - AluJb SINE Alu -6 306 1 857 136 0 36 chr9 40053991 40054131 -77808496 - AluJo SINE Alu -177 135 1 1221 181 85 11 chr9 40055172 40055443 -77807184 + L1MA6 LINE L1 6005 6295 -5 1744 148 7 55 chr9 40055451 40055761 -77806866 + AluJo SINE Alu 1 295 -17 785 159 53 14 chr9 40055777 40055985 -77806642 + Charlie2 DNA MER1_type 2248 2463 -399 447 157 4 2 chr9 40055990 40056213 -77806414 + AluJ SINE Alu 1 261 -51 1271 98 0 0 chr9 40056426 40056589 -77806038 - AluSp SINE Alu -11 302 140 275 93 0 47 chr9 40056593 40056636 -77805991 - AluSp SINE Alu -134 169 129 956 83 0 0 chr9 40056690 40056811 -77805816 - AluSq SINE Alu -14 299 179 22 0 0 0 chr9 40056811 40056833 -77805794 + AT_rich Low_complexity Low_complexity 1 22 0 734 113 119 62 chr9 40056833 40056892 -77805735 - L1MA8 LINE L1 -38 6253 6199 324 0 0 0 chr9 40056892 40056928 -77805699 + (TA)n Simple_repeat Simple_repeat 1 36 0 734 113 119 62 chr9 40056928 40057045 -77805582 - L1MA8 LINE L1 -92 6199 6067 1320 106 6 6 chr9 40057050 40057230 -77805397 - AluSq SINE Alu -133 180 1 1830 177 0 3 chr9 40057261 40057544 -77805083 - AluJo SINE Alu -30 282 1 379 286 56 45 chr9 40057567 40058041 -77804586 - L1MEd LINE L1 -4779 1531 1009 2152 98 25 0 chr9 40058041 40058344 -77804283 - AluSx SINE Alu 0 312 3 1340 189 16 4 chr9 40058379 40058627 -77804000 + AluJo SINE Alu 1 251 -61 1983 126 0 0 chr9 40058627 40058897 -77803730 - AluSx SINE Alu -42 270 1 3764 111 48 44 chr9 40058917 40058976 -77803651 - L1MA8 LINE L1 -38 6253 6196 504 0 0 0 chr9 40058976 40059032 -77803595 + (TA)n Simple_repeat Simple_repeat 1 56 0 3764 111 48 44 chr9 40059032 40059658 -77802969 - L1MA8 LINE L1 -95 6196 5565 475 250 95 65 chr9 40059658 40059736 -77802891 - L1MDa LINE L1 -1842 4698 4624 696 199 179 65 chr9 40059736 40059788 -77802839 + MER58A DNA MER1_type 1 46 -2374 1638 180 0 39 chr9 40059788 40059958 -77802669 - AluJo SINE Alu -18 294 140 2163 107 10 7 chr9 40059958 40060258 -77802369 - AluSg SINE Alu -9 301 1 1638 180 0 39 chr9 40060258 40060393 -77802234 - AluJo SINE Alu -172 140 1 696 199 179 65 chr9 40060393 40060541 -77802086 + MER58A DNA MER1_type 46 224 0 475 250 95 65 chr9 40060541 40060798 -77801829 - L1MDa LINE L1 -1916 4624 4353 3401 172 16 33 chr9 40060807 40060867 -77801760 - L1MB7 LINE L1 -13 6171 6111 2356 86 0 3 chr9 40060867 40061169 -77801458 - AluSx SINE Alu -11 301 1 3401 172 16 33 chr9 40061169 40061804 -77800823 - L1MB7 LINE L1 -73 6111 5488 3436 214 91 51 chr9 40061806 40062578 -77800049 - L1MB7 LINE L1 -1596 4550 3810 2262 123 3 0 chr9 40062578 40062887 -77799740 - AluSq SINE Alu -3 310 1 3436 214 91 51 chr9 40062887 40063103 -77799524 - L1MB7 LINE L1 -2336 3810 3604 1715 110 4 0 chr9 40063103 40063330 -77799297 + AluSq SINE Alu 1 228 -85 3436 214 91 51 chr9 40063330 40063566 -77799061 - L1MB7 LINE L1 -2542 3604 3277 526 272 122 36 chr9 40063554 40064016 -77798611 - L1MDa LINE L1 -2190 4350 3858 * 607 277 114 15 chr9 40064320 40064714 -77797913 - L1MDa LINE L1 -2679 3861 3429 799 296 69 48 chr9 40064717 40065032 -77797595 - L1MDa LINE L1 -3236 3304 2997 1483 76 119 148 chr9 40065032 40065204 -77797423 - AluSx SINE Alu -18 294 133 2115 115 0 0 chr9 40065204 40065490 -77797137 - AluSx SINE Alu -26 286 1 1483 76 119 148 chr9 40065490 40065620 -77797007 - AluSx SINE Alu -179 133 1 799 296 69 48 chr9 40065620 40066101 -77796526 - L1MDa LINE L1 -3543 2997 2492 1906 156 7 0 chr9 40066543 40066844 -77795783 + AluJo SINE Alu 1 303 -9 512 258 33 52 chr9 40066981 40067195 -77795432 - MER20B DNA MER1_type -4 215 2 193 358 12 12 chr9 40068652 40068733 -77793894 + L2 LINE L2 2928 3008 -264 5525 104 67 13 chr9 40068742 40069647 -77792980 - Tigger3b DNA MER2_type -3 1228 275 599 153 41 0 chr9 40069646 40069744 -77792883 - Tigger3b DNA MER2_type -1129 102 1 * 378 312 83 87 chr9 40069747 40070000 -77792627 + L2 LINE L2 3020 3271 -1 21 0 0 0 chr9 40070290 40070311 -77792316 + AT_rich Low_complexity Low_complexity 1 21 0 804 171 0 0 chr9 40070319 40070436 -77792191 + AluJb SINE Alu 1 117 -195 2292 77 3 26 chr9 40070499 40070810 -77791817 + AluSg1 SINE Alu 1 304 -5 241 274 32 0 chr9 40070857 40070952 -77791675 - L1ME LINE L1 -238 5883 5786 1631 117 4 4 chr9 40071020 40071250 -77791377 - AluSq SINE Alu -83 230 1 520 299 43 20 chr9 40071271 40071525 -77791102 - L1ME LINE L1 -365 5756 5497 1118 135 12 6 chr9 40071822 40071985 -77790642 - AluJb SINE Alu -16 296 133 2402 88 0 0 chr9 40072373 40072680 -77789947 - AluSc SINE Alu -2 307 1 203 317 33 0 chr9 40072725 40072785 -77789842 + L2 LINE L2 3211 3272 0 2074 107 0 44 chr9 40074099 40074271 -77788356 - AluSq SINE Alu -10 303 150 2230 93 7 0 chr9 40074271 40074562 -77788065 - AluSx SINE Alu -19 293 1 2074 107 0 44 chr9 40074562 40074706 -77787921 - AluSq SINE Alu -163 150 1 1908 138 10 3 chr9 40074775 40075064 -77787563 + AluSx SINE Alu 3 293 -19 1725 152 7 0 chr9 40075621 40075890 -77786737 + AluSx SINE Alu 1 271 -41 314 185 0 0 chr9 40076426 40076480 -77786147 + Tigger5 DNA MER2_type 1 54 -2269 503 163 12 0 chr9 40076489 40076575 -77786052 + Tigger5 DNA MER2_type 2237 2323 0 1354 147 114 18 chr9 40076715 40076987 -77785640 + AluJo SINE Alu 15 312 0 2320 97 0 0 chr9 40077385 40077683 -77784944 - AluSq SINE Alu -15 298 1 22 0 0 0 chr9 40077694 40077716 -77784911 + AT_rich Low_complexity Low_complexity 1 22 0 598 55 0 0 chr9 40077719 40077792 -77784835 - AluSq SINE Alu -107 206 134 1305 71 6 6 chr9 40077891 40078060 -77784567 - AluSg/x SINE Alu -10 299 131 503 315 85 10 chr9 40078367 40078567 -77784060 + MIR SINE MIR 48 262 0 2302 80 21 0 chr9 40078629 40078918 -77783709 - AluSx SINE Alu -17 295 1 337 258 118 0 chr9 40079448 40079541 -77783086 - L2 LINE L2 -15 3298 3195 499 302 134 38 chr9 40079546 40079827 -77782800 - L1ME3A LINE L1 -230 5923 5670 1862 169 13 7 chr9 40079827 40080134 -77782493 - AluJo SINE Alu -3 309 1 499 302 134 38 chr9 40080134 40080359 -77782268 - L1ME3A LINE L1 -483 5670 5367 186 43 0 0 chr9 40080383 40080406 -77782221 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 2192 79 43 0 chr9 40080411 40080689 -77781938 - AluSp SINE Alu -23 290 1 468 298 51 21 chr9 40080743 40081075 -77781552 - L1ME3A LINE L1 -878 5251 4910 278 331 65 0 chr9 40081240 40081364 -77781263 - L1ME3A LINE L1 -1482 4647 4516 589 190 99 0 chr9 40081397 40081518 -77781109 - FLAM_A SINE Alu 0 133 1 678 301 67 79 chr9 40081519 40081671 -77780956 - L1ME3A LINE L1 -5501 618 466 1417 150 113 34 chr9 40081671 40081937 -77780690 + AluJo SINE Alu 1 287 -25 678 301 67 79 chr9 40081937 40082378 -77780249 - L1ME3A LINE L1 -5653 466 32 2407 82 3 3 chr9 40082733 40083038 -77779589 + AluSp SINE Alu 1 305 -8 459 293 79 16 chr9 40083208 40083707 -77778920 - L1ME LINE L1 -384 5855 5312 2181 92 0 51 chr9 40083807 40084122 -77778505 - AluSx SINE Alu -13 299 1 4822 89 34 0 chr9 40084124 40084797 -77777830 - L1PA13 LINE L1 -5 6158 5463 498 271 79 4 chr9 40084810 40085090 -77777537 - L1ME LINE L1 -3531 2684 2384 327 267 43 105 chr9 40085200 40085410 -77777217 - L1ME LINE L1 -4130 2266 2070 1332 126 55 71 chr9 40085590 40085680 -77776947 + MER33 DNA MER1_type 4 94 -2491 2257 123 0 0 chr9 40085680 40085982 -77776645 + AluSx SINE Alu 3 304 -8 1332 126 55 71 chr9 40085982 40086216 -77776411 + MER33 DNA MER1_type 94 323 -1 410 337 36 39 chr9 40086328 40086687 -77775940 - HAL1 LINE L1 -892 1615 1258 329 307 85 0 chr9 40086716 40086869 -77775758 - L1ME LINE L1 -5025 1180 1015 1039 155 6 6 chr9 40086870 40087038 -77775589 - AluJo SINE Alu -9 303 136 5734 151 24 8 chr9 40087057 40087416 -77775211 - L1PB1 LINE L1 -1 6150 5798 342 0 0 0 chr9 40087416 40087454 -77775173 + (TA)n Simple_repeat Simple_repeat 2 39 0 5734 151 24 8 chr9 40087454 40088397 -77774230 - L1PB1 LINE L1 -353 5798 4821 490 246 22 7 chr9 40088587 40088725 -77773902 + L1MC4a LINE L1 5790 5929 -1879 252 278 0 0 chr9 40088725 40088779 -77773848 + (TG)n Simple_repeat Simple_repeat 1 54 0 277 242 38 70 chr9 40088792 40088949 -77773678 + HAL1 LINE L1 2355 2506 -1 22 0 0 0 chr9 40088952 40088974 -77773653 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr9 40089715 40089759 -77772868 + AT_rich Low_complexity Low_complexity 1 44 0 231 250 150 8 chr9 40089764 40089884 -77772743 - L1ME4a LINE L1 -62 6059 5923 588 282 103 43 chr9 40090691 40091110 -77771517 + L1MC4a LINE L1 5462 5905 -1903 2213 102 0 10 chr9 40091565 40091860 -77770767 + AluSg SINE Alu 1 292 -18 800 195 0 0 chr9 40092110 40092238 -77770389 - AluJo SINE Alu -172 130 3 1943 132 25 0 chr9 40092249 40092530 -77770097 - AluSx SINE Alu -18 294 7 395 294 57 76 chr9 40092624 40093096 -77769531 - L1M4 LINE L1 -1197 4949 4487 1820 264 199 43 chr9 40093111 40093167 -77769460 - L1MEd LINE L1 -1470 4745 4699 288 0 0 0 chr9 40093167 40093199 -77769428 + (CA)n Simple_repeat Simple_repeat 2 33 0 1820 264 199 43 chr9 40093199 40093259 -77769368 - L1MEd LINE L1 -1516 4699 4650 2300 99 0 3 chr9 40093259 40093552 -77769075 - AluSq SINE Alu -21 292 1 1820 264 199 43 chr9 40093552 40093766 -77768861 - L1MEd LINE L1 -1565 4650 4471 1713 196 14 0 chr9 40093766 40094051 -77768576 + AluJb SINE Alu 2 290 -22 1820 264 199 43 chr9 40094051 40094197 -77768430 - L1MEd LINE L1 -1744 4471 4349 2258 104 0 0 chr9 40094197 40094494 -77768133 - AluSq SINE Alu -14 299 3 1820 264 199 43 chr9 40094494 40095279 -77767348 - L1MEd LINE L1 -1866 4349 3688 876 158 8 0 chr9 40095279 40095406 -77767221 + FLAM_C SINE Alu 1 128 -5 2048 86 7 45 chr9 40095411 40095731 -77766896 + AluSg SINE Alu 1 309 0 423 0 0 0 chr9 40095731 40095778 -77766849 + (TA)n Simple_repeat Simple_repeat 2 48 0 1820 264 199 43 chr9 40095778 40096182 -77766445 - L1MEd LINE L1 -2529 3686 2806 506 280 133 29 chr9 40096184 40096463 -77766164 - L1MEd LINE L1 -3936 2460 2153 1396 216 18 0 chr9 40096463 40096746 -77765881 + AluJo SINE Alu 1 288 -24 34 24 0 0 chr9 40096933 40096974 -77765653 + AT_rich Low_complexity Low_complexity 1 41 0 1271 172 0 5 chr9 40097008 40097223 -77765404 + AluJb SINE Alu 85 298 -14 325 316 125 20 chr9 40097239 40097391 -77765236 - L1MEd LINE L1 -4584 1812 1645 259 270 54 0 chr9 40097391 40097502 -77765125 - L1MEd LINE L1 -4818 1399 1283 204 188 25 62 chr9 40097557 40097637 -77764990 + T-rich Low_complexity Low_complexity 2 78 0 470 249 131 60 chr9 40097652 40097706 -77764921 - L1MEd LINE L1 -4814 1401 1352 1595 149 28 0 chr9 40097706 40097954 -77764673 - AluJb SINE Alu -57 255 1 470 249 131 60 chr9 40097954 40098370 -77764257 - L1MEd LINE L1 -4863 1352 937 22 0 0 0 chr9 40098497 40098519 -77764108 + AT_rich Low_complexity Low_complexity 1 22 0 1626 202 0 7 chr9 40098519 40098811 -77763816 - AluJo SINE Alu -22 290 1 2322 101 0 13 chr9 40099097 40099414 -77763213 + AluSp SINE Alu 1 313 0 2412 81 0 3 chr9 40099692 40099990 -77762637 - AluSq SINE Alu -16 297 1 2168 92 7 7 chr9 40100009 40100302 -77762325 - AluSq SINE Alu -15 298 6 595 225 81 66 chr9 40100361 40100708 -77761919 - L1MEd LINE L1 -2911 3218 2867 1427 176 107 0 chr9 40100750 40101022 -77761605 - AluJo SINE Alu -11 301 1 445 101 78 3 chr9 40101072 40101407 -77761220 + (TA)n Simple_repeat Simple_repeat 1 360 0 1508 140 96 44 chr9 40101431 40101702 -77760925 - AluJb SINE Alu -22 290 6 2293 122 3 0 chr9 40101897 40102209 -77760418 + AluSq SINE Alu 1 313 0 30 59 0 0 chr9 40102223 40102274 -77760353 + AT_rich Low_complexity Low_complexity 1 51 0 822 171 16 0 chr9 40102535 40102658 -77759969 - FLAM_C SINE Alu -17 126 2 21 57 0 0 chr9 40102834 40102869 -77759758 + AT_rich Low_complexity Low_complexity 1 35 0 1916 137 16 13 chr9 40103745 40104051 -77758576 - AluJb SINE Alu 0 312 6 451 236 64 14 chr9 40104058 40104198 -77758429 - L1MEd LINE L1 -4100 2210 2064 2261 112 0 7 chr9 40104356 40104659 -77757968 - AluSx SINE Alu -11 301 1 577 270 110 38 chr9 40104735 40105059 -77757568 - L1MEd LINE L1 -4579 1731 1312 2329 105 3 0 chr9 40105059 40105364 -77757263 - AluSp SINE Alu -7 306 1 577 270 110 38 chr9 40105364 40105542 -77757085 - L1MEd LINE L1 -4998 1312 1148 333 318 11 17 chr9 40105606 40105782 -77756845 - L1MEd LINE L1 -4974 1145 971 333 260 55 16 chr9 40105810 40105937 -77756690 - MARNA DNA Mariner -53 533 402 390 280 117 59 chr9 40106199 40106438 -77756189 + L1MC/D LINE L1 5406 5658 -2150 219 309 89 68 chr9 40107491 40107682 -77754945 + L2 LINE L2 3119 3313 0 247 186 0 0 chr9 40108109 40108152 -77754475 - L2 LINE L2 -3 3310 3268 302 266 196 67 chr9 40108381 40108948 -77753679 - L1M2 LINE L1 -5523 1326 687 2280 64 24 7 chr9 40109430 40109725 -77752902 - AluSg1 SINE Alu -9 300 1 2494 149 59 74 chr9 40109904 40110415 -77752212 + MLT2B2 LTR ERVL 2 504 -11 432 180 0 0 chr9 40111052 40111113 -77751514 + AluJo SINE Alu 2 62 -250 645 158 42 0 chr9 40111113 40111208 -77751419 - AluJb SINE Alu -16 296 198 1272 174 0 64 chr9 40111209 40111473 -77751154 + AluJo SINE Alu 52 298 -14 2660 7 0 0 chr9 40111476 40111761 -77750866 + AluYb8 SINE Alu 34 318 0 779 210 157 26 chr9 40112054 40112283 -77750344 - MIR SINE MIR 0 262 4 254 235 0 0 chr9 40112588 40112639 -77749988 - Charlie8 DNA MER1_type -2225 192 142 2297 127 8 29 chr9 40112951 40113329 -77749298 + L1MB3 LINE L1 5814 6183 0 784 234 147 59 chr9 40113330 40113876 -77748751 + HAL1 LINE L1 1832 2425 -82 259 193 36 48 chr9 40113872 40113955 -77748672 - L1MB3 LINE L1 -125 6058 5977 * 285 250 73 32 chr9 40114783 40114907 -77747720 - L1MC4 LINE L1 0 8042 7914 2346 196 73 6 chr9 40114928 40114980 -77747647 - L1MB3 LINE L1 -2 6181 6130 4463 210 59 115 chr9 40114980 40115558 -77747069 - L1ME2 LINE L1 -45 6119 5510 732 178 42 0 chr9 40115558 40115676 -77746951 - FLAM_C SINE Alu -6 127 5 4463 210 59 115 chr9 40115676 40116797 -77745830 - L1ME2 LINE L1 -654 5510 4327 455 223 21 0 chr9 40116797 40116891 -77745736 - AluJo SINE Alu -177 135 40 4463 210 59 115 chr9 40116891 40117013 -77745614 - L1ME2 LINE L1 -1837 4327 4200 842 144 7 50 chr9 40117013 40117152 -77745475 + FLAM_C SINE Alu 1 133 0 4463 210 59 115 chr9 40117152 40117332 -77745295 - L1ME2 LINE L1 -1964 4200 4011 192 111 0 0 chr9 40117332 40117368 -77745259 + (TG)n Simple_repeat Simple_repeat 1 36 0 4463 210 59 115 chr9 40117368 40118079 -77744548 - L1ME2 LINE L1 -2153 4011 3518 2500 114 46 8 chr9 40118124 40118475 -77744152 + THE1B LTR MaLR 1 364 0 1124 224 106 44 chr9 40118491 40119182 -77743445 + LTR41 LTR ERVL 1 767 -6 497 305 62 20 chr9 40119704 40119983 -77742644 + LTR40c LTR ERVL 148 480 -39 2312 101 0 0 chr9 40120361 40120658 -77741969 + AluSx SINE Alu 1 297 -15 2173 115 0 0 chr9 40121805 40122092 -77740535 + AluSx SINE Alu 1 287 -25 192 97 0 0 chr9 40122095 40122126 -77740501 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2210 106 0 0 chr9 40123194 40123486 -77739141 + AluSx SINE Alu 1 292 -20 2317 88 7 0 chr9 40124142 40124438 -77738189 - AluSx SINE Alu -14 298 1 267 309 36 18 chr9 40125258 40125368 -77737259 + L3 LINE CR1 1065 1176 -401 441 279 130 10 chr9 40125406 40125614 -77737013 + L3 LINE CR1 1301 1533 -44 27 49 0 0 chr9 40126115 40126156 -77736471 + AT_rich Low_complexity Low_complexity 1 41 0 304 328 147 59 chr9 40126779 40127120 -77735507 + L2 LINE L2 2902 3272 0 816 179 136 11 chr9 40127289 40127473 -77735154 + MER3 DNA MER1_type 2 208 -1 262 286 71 0 chr9 40129483 40129581 -77733046 - L1ME4a LINE L1 -4 6117 6013 199 206 363 0 chr9 40129613 40129715 -77732912 - MIR SINE MIR -31 231 93 2494 124 104 2 chr9 40130186 40130589 -77732038 - L1PB3 LINE L1 -2 6152 5709 2039 106 50 3 chr9 40131337 40131620 -77731007 - AluSg SINE Alu -10 300 5 186 189 27 0 chr9 40131643 40131680 -77730947 - L2 LINE L2 -16 3256 3219 2173 103 7 0 chr9 40131830 40132120 -77730507 - AluSx SINE Alu -6 306 15 292 331 153 31 chr9 40132338 40132625 -77730002 - L2 LINE L2 -5 3267 2946 2478 86 0 0 chr9 40132634 40132947 -77729680 - AluSp SINE Alu 0 313 1 2054 124 10 13 chr9 40132947 40133245 -77729382 - AluSx SINE Alu -14 298 1 24 53 0 0 chr9 40133580 40133618 -77729009 + AT_rich Low_complexity Low_complexity 1 38 0 1559 156 45 24 chr9 40134034 40134322 -77728305 + AluJo SINE Alu 1 294 -18 992 314 64 36 chr9 40134570 40135102 -77727525 - L3 LINE CR1 -23 1554 1008 263 242 22 33 chr9 40135158 40135249 -77727378 - MARNA DNA Mariner -478 108 19 1369 167 93 0 chr9 40135557 40135814 -77726813 + AluJb SINE Alu 1 281 -31 722 158 0 39 chr9 40135878 40136005 -77726622 - FRAM SINE Alu -5 171 50 2112 118 0 0 chr9 40136025 40136305 -77726322 - AluSc SINE Alu -29 280 1 626 283 79 22 chr9 40136310 40136438 -77726189 - L1MC4 LINE L1 0 8042 7923 1647 178 3 43 chr9 40136438 40136741 -77725886 + AluJo SINE Alu 1 291 -21 626 283 79 22 chr9 40136741 40137019 -77725608 - L1MC4 LINE L1 -119 7923 7613 817 139 0 8 chr9 40137033 40137155 -77725472 - FLAM_C SINE Alu -20 123 3 393 173 49 0 chr9 40137196 40137277 -77725350 - L1MC4 LINE L1 -487 7555 7471 672 183 87 0 chr9 40137281 40137396 -77725231 + FLAM_C SINE Alu 2 126 -17 1391 140 123 74 chr9 40137407 40137545 -77725082 + AluJo SINE Alu 1 131 -181 1866 155 0 7 chr9 40137545 40137836 -77724791 + AluJo SINE Alu 1 289 -23 1391 140 123 74 chr9 40137836 40137982 -77724645 + AluJo SINE Alu 131 299 -13 573 219 215 15 chr9 40138007 40138267 -77724360 - L1MC4a LINE L1 -467 7341 7030 25 31 0 0 chr9 40138311 40138343 -77724284 + AT_rich Low_complexity Low_complexity 1 32 0 392 318 75 3 chr9 40139235 40139556 -77723071 + L1M4 LINE L1 3099 3442 -2704 1644 137 78 25 chr9 40139956 40140240 -77722387 + AluJb SINE Alu 1 299 -13 2087 151 0 0 chr9 40140521 40140833 -77721794 - AluJb SINE Alu 0 312 1 2074 142 10 0 chr9 40142323 40142625 -77720002 - AluJo SINE Alu -7 305 1 866 187 7 13 chr9 40142782 40142932 -77719695 + LTR53 LTR ERVL 1 149 -370 9020 32 20 2 chr9 40142932 40144754 -77717873 + L1PA4 LINE L1 4301 6149 -6 2039 201 24 0 chr9 40144756 40145125 -77717502 + LTR53 LTR ERVL 142 519 0 1990 130 0 59 chr9 40145135 40145286 -77717341 + AluSq SINE Alu 1 125 -188 1825 117 0 4 chr9 40145286 40145543 -77717084 + AluY SINE Alu 50 305 -6 1990 130 0 59 chr9 40145543 40145713 -77716914 + AluSq SINE Alu 125 303 -10 616 246 106 47 chr9 40146373 40146609 -77716018 + MIR SINE MIR 10 259 -3 2070 105 6 43 chr9 40146685 40147008 -77715619 - AluY SINE Alu 0 311 1 21 0 0 0 chr9 40147129 40147150 -77715477 + AT_rich Low_complexity Low_complexity 1 21 0 257 290 54 32 chr9 40147440 40147533 -77715094 - MIR SINE MIR -77 131 37 2101 127 10 0 chr9 40148150 40148442 -77714185 - AluSq SINE Alu -18 295 1 243 245 0 0 chr9 40148640 40148693 -77713934 - L2 LINE L2 -5 3308 3256 368 242 185 38 chr9 40149095 40149306 -77713321 - HAL1 LINE L1 -17 2490 2249 1048 179 40 0 chr9 40149336 40149509 -77713118 - AluJb SINE Alu -25 287 108 2107 106 14 0 chr9 40149533 40149815 -77712812 - AluSx SINE Alu -26 286 1 233 97 0 0 chr9 40150000 40150031 -77712596 - MER3 DNA MER1_type -160 49 19 2097 144 3 0 chr9 40150031 40150323 -77712304 - AluSx SINE Alu -19 293 1 2030 190 72 44 chr9 40150328 40150855 -77711772 - L1ME2 LINE L1 -131 6033 5492 529 327 86 4 chr9 40150937 40151215 -77711412 - L1MEc LINE L1 -6092 304 4 1958 156 0 0 chr9 40151441 40151724 -77710903 - AluJb SINE Alu -24 288 6 237 200 31 31 chr9 40151742 40151807 -77710820 - HAL1 LINE L1 -366 2141 2077 201 299 120 0 chr9 40151976 40152093 -77710534 + MIR SINE MIR 59 189 -73 1673 183 31 0 chr9 40152483 40152773 -77709854 + AluJo SINE Alu 1 299 -13 531 155 48 10 chr9 40152856 40152959 -77709668 - FLAM_C SINE Alu -26 117 11 244 196 0 0 chr9 40152968 40153019 -77709608 + L1MC4 LINE L1 6653 6703 -1339 318 223 0 43 chr9 40153037 40153131 -77709496 - L1MC4 LINE L1 -1339 6703 6614 1879 123 3 47 chr9 40153134 40153434 -77709193 - AluSx SINE Alu -25 287 1 184 245 19 19 chr9 40153719 40153772 -77708855 - L2 LINE L2 0 3272 3220 277 330 48 0 chr9 40154223 40154326 -77708301 + L2 LINE L2 3203 3310 -3 581 217 26 84 chr9 40154436 40154589 -77708038 - L1MB3 LINE L1 -28 6155 6018 2208 89 4 7 chr9 40154589 40154870 -77707757 - AluY SINE Alu -31 280 1 581 217 26 84 chr9 40154870 40154942 -77707685 - L1MB3 LINE L1 -165 6018 5943 425 190 0 13 chr9 40154946 40155025 -77707602 + MSTC LTR MaLR 1 78 -350 429 235 274 11 chr9 40155325 40155564 -77707063 + L2 LINE L2 2715 3011 -302 783 140 199 72 chr9 40156348 40156569 -77706058 + MER4D LTR ERV1 1 249 -623 5568 118 191 39 chr9 40156580 40157658 -77704969 - pTR5 LTR ERV1 0 2438 1197 564 268 134 10 chr9 40158161 40158370 -77704257 + MIR SINE MIR 28 262 0 186 167 0 0 chr9 40158441 40158477 -77704150 + CT-rich Low_complexity Low_complexity 3 38 0 1692 161 0 25 chr9 40158544 40158829 -77703798 + AluJb SINE Alu 21 298 -14 332 309 46 14 chr9 40159517 40159675 -77702952 - MIR SINE MIR -51 211 49 898 177 0 0 chr9 40159811 40159958 -77702669 + AluJb SINE Alu 61 207 -105 2443 207 82 13 chr9 40160255 40160792 -77701835 + MER119 DNA MER1_type 10 583 0 2228 89 4 0 chr9 40161339 40161748 -77700879 + AluSx SINE Alu 1 410 0 1229 184 93 17 chr9 40162051 40162341 -77700286 + L1ME1 LINE L1 5864 6333 -1 1784 230 81 82 chr9 40164613 40164762 -77697865 + HAL1 LINE L1 1506 1654 -853 1381 98 10 0 chr9 40164762 40164956 -77697671 + L1PA8A LINE L1 5936 6131 0 1784 230 81 82 chr9 40164956 40165731 -77696896 + HAL1 LINE L1 1654 2429 -78 409 124 191 22 chr9 40165779 40165824 -77696803 - MER63 DNA MER1_type -106 730 694 1909 174 0 6 chr9 40165824 40166135 -77696492 - AluJo SINE Alu -3 309 1 409 124 191 22 chr9 40166135 40166178 -77696449 - MER63 DNA MER1_type -142 694 1 346 271 17 25 chr9 40166252 40166370 -77696257 + L1ME4a LINE L1 5490 5606 -515 2076 117 3 26 chr9 40166371 40166680 -77695947 + AluSx SINE Alu 1 302 -10 337 156 21 0 chr9 40166680 40166776 -77695851 + (TA)n Simple_repeat Simple_repeat 1 98 0 24 0 0 0 chr9 40166780 40166804 -77695823 + AT_rich Low_complexity Low_complexity 1 24 0 1529 248 62 57 chr9 40166851 40167380 -77695247 + MLT1K LTR MaLR 57 588 0 337 305 121 5 chr9 40167404 40167594 -77695033 + L1ME4a LINE L1 5680 5891 -230 1980 169 0 3 chr9 40167807 40168114 -77694513 + AluJo SINE Alu 1 306 -6 1793 153 3 0 chr9 40169060 40169370 -77693257 + AluSx SINE Alu 30 312 0 281 238 113 25 chr9 40169430 40169510 -77693117 - HsTC2 DNA Tc2 -1811 87 1 1586 224 14 16 chr9 40169514 40169880 -77692747 + MLT1A1 LTR MaLR 1 365 0 878 192 68 0 chr9 40170400 40170498 -77692129 - MER5A DNA MER1_type 0 189 99 2407 91 0 0 chr9 40170498 40170795 -77691832 - AluSx SINE Alu -15 297 1 878 192 68 0 chr9 40170795 40170873 -77691754 - MER5A DNA MER1_type -90 99 1 228 211 18 18 chr9 40171229 40171286 -77691341 + CT-rich Low_complexity Low_complexity 4 60 0 218 260 0 27 chr9 40171712 40171785 -77690842 + L2 LINE L2 3235 3305 -8 1187 158 13 35 chr9 40172024 40172252 -77690375 + AluJo SINE Alu 87 309 -3 367 271 16 8 chr9 40172782 40172904 -77689723 - MER5A DNA MER1_type 0 189 67 1418 189 4 7 chr9 40172904 40173174 -77689453 - AluJo SINE Alu -10 302 34 1821 107 118 7 chr9 40173190 40173356 -77689271 - AluSg SINE Alu -9 301 155 2331 103 0 6 chr9 40173356 40173667 -77688960 - AluSx SINE Alu -3 309 1 1821 107 118 7 chr9 40173667 40173771 -77688856 - AluSg SINE Alu -155 155 1 248 319 0 0 chr9 40173774 40173846 -77688781 - MER5A DNA MER1_type -117 72 1 313 282 80 19 chr9 40175412 40175726 -77686901 + LTR33 LTR ERVL 92 513 -8 477 323 36 5 chr9 40179208 40179400 -77683227 - MIR SINE MIR -3 259 62 2145 130 3 0 chr9 40179934 40180235 -77682392 - AluSx SINE Alu -10 302 1 238 154 0 0 chr9 40180326 40180365 -77682262 - L2 LINE L2 -13 3259 3221 1022 202 157 45 chr9 40182089 40182465 -77680162 - Charlie1 DNA MER1_type -1 2760 2343 328 275 14 0 chr9 40182464 40182533 -77680094 - Charlie1 DNA MER1_type -2691 70 1 * 428 286 19 0 chr9 40234508 40234662 -77627965 + L1ME4a LINE L1 5749 5905 -216 205 219 0 0 chr9 40235460 40235501 -77627126 - MIR3 SINE MIR -6 202 162 217 132 0 0 chr9 40235717 40235755 -77626872 + (A)n Simple_repeat Simple_repeat 1 38 0 1258 129 0 0 chr9 40235771 40235934 -77626693 + AluSq SINE Alu 1 163 -150 5808 109 20 34 chr9 40235934 40236896 -77625731 - Tigger1 DNA MER2_type -80 2338 1391 8712 124 25 9 chr9 40236996 40238370 -77624257 - Tigger1 DNA MER2_type -1022 1396 2 2224 103 3 0 chr9 40238419 40238709 -77623918 + AluSq SINE Alu 1 291 -22 2114 123 0 35 chr9 40238719 40239029 -77623598 + AluSc SINE Alu 1 299 -10 602 277 150 5 chr9 40240349 40240569 -77622058 + MIR SINE MIR 2 253 -9 299 232 277 18 chr9 40240857 40240969 -77621658 - MIR3 SINE MIR -46 162 22 221 154 58 0 chr9 40241304 40241356 -77621271 + (CAGGG)n Simple_repeat Simple_repeat 4 58 0 197 371 48 24 chr9 40242106 40242230 -77620397 - L2 LINE L2 -5 3308 3182 248 281 94 31 chr9 40242278 40242406 -77620221 - MIR SINE MIR -19 243 108 227 316 71 0 chr9 40243660 40243758 -77618869 - MIR SINE MIR -3 259 155 232 121 0 0 chr9 40243812 40243845 -77618782 - MIR SINE MIR -213 49 17 235 245 135 80 chr9 40243932 40244095 -77618532 + MIR3 SINE MIR 16 187 -21 317 280 53 15 chr9 40244666 40244798 -77617829 + MIR3 SINE MIR 48 184 -24 1529 194 111 101 chr9 40245055 40245570 -77617057 + MLT2B1 LTR ERVL 1 520 0 402 304 132 71 chr9 40246986 40247392 -77615235 + L1MC4a LINE L1 5521 5800 -364 214 248 153 51 chr9 40247618 40247761 -77614866 - MIR3 SINE MIR -71 137 1 2424 80 0 0 chr9 40248539 40248852 -77613775 + AluSq SINE Alu 1 313 0 255 31 0 0 chr9 40249288 40249320 -77613307 + (CA)n Simple_repeat Simple_repeat 1 32 0 1179 61 0 0 chr9 40249845 40249992 -77612635 + L1PA5 LINE L1 6008 6154 0 251 308 58 8 chr9 40250586 40250706 -77611921 + MIR SINE MIR 20 145 -63 354 355 7 40 chr9 40250890 40251042 -77611585 + MIR SINE MIR 30 176 -86 189 331 176 0 chr9 40253746 40253882 -77608745 + L2 LINE L2 2898 3057 -215 1905 151 0 0 chr9 40254874 40255173 -77607454 - AluJb SINE Alu -13 299 1 181 337 0 11 chr9 40255316 40255405 -77607222 - L2 LINE L2 -27 3245 3158 206 242 0 65 chr9 40255574 40255636 -77606991 - L2 LINE L2 -546 2768 2711 227 288 209 20 chr9 40256184 40256337 -77606290 - MIR3 SINE MIR -20 188 7 346 271 8 59 chr9 40257305 40257423 -77605204 + MIR SINE MIR 81 192 -70 374 254 61 8 chr9 40258463 40258603 -77604024 + MIR SINE MIR 42 192 -62 184 188 0 0 chr9 40261994 40262026 -77600601 + MIR SINE MIR 119 150 -112 350 242 81 32 chr9 40263461 40263585 -77599042 + L2 LINE L2 3184 3313 0 192 205 0 0 chr9 40263781 40263820 -77598807 - L2 LINE L2 -91 3181 3143 702 253 143 22 chr9 40264060 40264333 -77598294 - L2 LINE L2 0 3313 3008 191 187 227 13 chr9 40265004 40265079 -77597548 + MIR SINE MIR 34 124 -84 446 249 68 0 chr9 40265851 40265988 -77596639 - MIR SINE MIR -63 145 35 556 240 71 19 chr9 40266570 40266724 -77595903 + MIR SINE MIR 100 261 -1 210 352 0 11 chr9 40267673 40267761 -77594866 - MIR3 SINE MIR -9 199 113 395 390 42 5 chr9 40267993 40268183 -77594444 - L3 LINE CR1 -1 1576 1380 252 283 0 0 chr9 40268202 40268255 -77594372 + MIR3 SINE MIR 108 160 -48 376 271 68 5 chr9 40268733 40268851 -77593776 + MIR SINE MIR 63 183 -63 185 273 114 34 chr9 40268932 40269020 -77593607 - MIR SINE MIR -60 148 54 1597 173 32 7 chr9 40269754 40270031 -77592596 + AluJb SINE Alu 6 289 -23 467 242 0 30 chr9 40270530 40270662 -77591965 + MIR3 SINE MIR 66 193 -15 468 315 75 58 chr9 40276021 40276502 -77586125 + L1MC4a LINE L1 5506 5996 -125 203 306 14 14 chr9 40276682 40276754 -77585873 - MER5A DNA MER1_type -1 188 117 * 253 210 48 0 chr9 40276750 40276812 -77585815 + MER5A DNA MER1_type 122 186 -3 621 124 0 0 chr9 40277087 40277184 -77585443 + L1PB1 LINE L1 6053 6149 -2 2270 97 0 7 chr9 40277478 40277788 -77584839 + AluSp SINE Alu 3 310 -3 2109 103 0 38 chr9 40277794 40278113 -77584514 + AluSx SINE Alu 1 307 -5 893 188 11 6 chr9 40278272 40278448 -77584179 + MSTB1 LTR MaLR 256 432 0 643 103 21 0 chr9 40278448 40278543 -77584084 + MLT1B LTR MaLR 294 390 0 188 277 62 0 chr9 40279619 40279684 -77582943 + L3 LINE CR1 1400 1468 -109 351 233 106 101 chr9 40280907 40281096 -77581531 - L3 LINE CR1 -76 1501 1312 244 317 250 0 chr9 40282385 40282505 -77580122 + MIR SINE MIR 96 245 -17 263 310 9 26 chr9 40283634 40283747 -77578880 - L2 LINE L2 -28 3244 3134 202 325 187 30 chr9 40283755 40283958 -77578669 + L2 LINE L2 3027 3261 -11 691 275 80 23 chr9 40284250 40284512 -77578115 - LTR16C LTR ERVL -2 489 213 376 301 55 33 chr9 40285440 40285623 -77577004 + L1ME4a LINE L1 5799 5985 -136 523 192 3 87 chr9 40286118 40286260 -77576367 + MIR SINE MIR 52 181 -63 1879 121 7 0 chr9 40286261 40286542 -77576085 - AluSx SINE Alu -4 308 26 791 217 96 24 chr9 40287441 40287607 -77575020 + MER45A DNA AcHobo 1 178 0 231 305 99 0 chr9 40287648 40287759 -77574868 + MIR SINE MIR 35 156 -52 2126 98 0 22 chr9 40287896 40288212 -77574415 + AluSc SINE Alu 1 309 0 285 292 173 22 chr9 40289041 40289226 -77573401 - MIR SINE MIR -29 233 21 570 147 202 0 chr9 40290283 40290392 -77572235 + AluJo SINE Alu 6 136 -176 470 316 64 5 chr9 40291292 40291479 -77571148 - L3 LINE CR1 -104 1473 1276 2217 109 0 0 chr9 40291542 40291854 -77570773 - AluSx SINE Alu 0 312 1 735 321 68 23 chr9 40291881 40292233 -77570394 + L3 LINE CR1 1140 1507 -70 295 232 0 14 chr9 40292545 40292614 -77570013 - MER58A DNA MER1_type -1 223 156 699 222 17 33 chr9 40292629 40292809 -77569818 - MER5B DNA MER1_type 0 178 2 284 244 51 26 chr9 40292870 40292948 -77569679 - MIR SINE MIR -87 121 42 541 292 35 12 chr9 40293648 40293819 -77568808 - MIR SINE MIR -66 196 22 498 211 156 0 chr9 40294348 40294476 -77568151 + MIR SINE MIR 19 166 -96 249 355 89 47 chr9 40295246 40295415 -77567212 + L2 LINE L2 3097 3272 0 * 353 209 62 54 chr9 40295413 40295542 -77567085 - MIR3 SINE MIR -66 142 13 211 236 34 56 chr9 40297055 40297144 -77565483 + MIR SINE MIR 16 102 -106 206 222 0 0 chr9 40297412 40297448 -77565179 + (CAGG)n Simple_repeat Simple_repeat 4 39 0 206 242 16 0 chr9 40298536 40298598 -77564029 - L2 LINE L2 -557 2757 2695 340 328 211 0 chr9 40298941 40299145 -77563482 + MIR SINE MIR 9 255 -7 199 303 131 30 chr9 40299816 40300014 -77562613 + L2 LINE L2 2844 3061 -211 2448 90 3 0 chr9 40300465 40300775 -77561852 + AluSp SINE Alu 1 311 -2 300 178 0 82 chr9 40301233 40301306 -77561321 - L2 LINE L2 0 3272 3206 2103 112 10 43 chr9 40302176 40302481 -77560146 + AluSx SINE Alu 1 295 -17 1851 94 0 4 chr9 40302803 40303038 -77559589 + AluSx SINE Alu 3 236 -76 589 227 130 0 chr9 40303097 40303251 -77559376 + MER58B DNA MER1_type 168 341 0 454 248 40 8 chr9 40303372 40303497 -77559130 - MARNA DNA Mariner -196 390 262 238 233 17 0 chr9 40303820 40303880 -77558747 - MIR SINE MIR -67 141 81 351 303 120 7 chr9 40304038 40304180 -77558447 + MIR SINE MIR 87 244 -18 344 189 0 0 chr9 40305065 40305139 -77557488 - L1ME4a LINE L1 -92 6029 5956 1500 198 32 0 chr9 40305218 40305501 -77557126 + AluJo SINE Alu 1 292 -20 1731 152 52 7 chr9 40305881 40306151 -77556476 - AluJb SINE Alu -15 297 16 2175 112 10 26 chr9 40306188 40306501 -77556126 + AluSx SINE Alu 5 312 0 247 143 41 0 chr9 40306504 40306553 -77556074 - MIR SINE MIR -73 135 85 2286 100 31 0 chr9 40306657 40306948 -77555679 - AluSq SINE Alu -13 300 1 2320 86 3 10 chr9 40308018 40308322 -77554305 + AluSc SINE Alu 1 302 -7 196 322 9 52 chr9 40309700 40309815 -77552812 + L2 LINE L2 2950 3059 -213 490 223 26 104 chr9 40309993 40310102 -77552525 + MIR SINE MIR 42 131 -131 2299 103 0 0 chr9 40310102 40310394 -77552233 - AluY SINE Alu -19 292 1 490 223 26 104 chr9 40310394 40310477 -77552150 + MIR SINE MIR 131 219 -43 313 276 0 0 chr9 40310648 40310746 -77551881 - MIR SINE MIR 0 262 165 217 354 0 63 chr9 40310898 40311025 -77551602 - MIR SINE MIR -73 135 25 259 336 28 28 chr9 40311530 40311637 -77550990 + L3 LINE CR1 1256 1362 -215 592 253 49 19 chr9 40311830 40311992 -77550635 - MER5B DNA MER1_type -1 177 11 450 303 133 57 chr9 40313062 40313196 -77549431 + L1ME LINE L1 4931 5053 -1093 1952 145 3 3 chr9 40313196 40313485 -77549142 - AluSx SINE Alu -19 293 5 450 303 133 57 chr9 40313485 40313772 -77548855 + L1ME LINE L1 5053 5384 -762 372 283 107 11 chr9 40313852 40314039 -77548588 + L1ME LINE L1 5544 5748 -373 551 292 70 46 chr9 40314040 40314321 -77548306 + HAL1b LINE L1 1188 1330 -18 206 267 44 67 chr9 40314686 40314776 -77547851 + L3 LINE CR1 1364 1451 -126 688 272 166 33 chr9 40315203 40315966 -77546661 + L2 LINE L2 2405 3291 -22 207 0 0 0 chr9 40315974 40315997 -77546630 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 255 287 86 12 chr9 40316648 40316785 -77545842 + MIR SINE MIR 52 195 -57 617 188 65 178 chr9 40316949 40317026 -77545601 + MIR SINE MIR 3 87 -175 1953 115 15 0 chr9 40317026 40317307 -77545320 - AluSx SINE Alu 0 306 22 240 67 0 0 chr9 40317307 40317337 -77545290 - AluSx SINE Alu -94 39 10 617 188 65 178 chr9 40317337 40317521 -77545106 + MIR SINE MIR 85 262 0 257 366 15 23 chr9 40317723 40317854 -77544773 + L2 LINE L2 3138 3267 -5 1886 139 73 3 chr9 40317909 40318197 -77544430 + AluJb SINE Alu 3 310 -2 506 257 29 7 chr9 40319044 40319180 -77543447 + MIR SINE MIR 11 149 -113 1374 215 119 50 chr9 40319180 40319584 -77543043 + MLT1H LTR MaLR 4 435 -114 830 200 69 0 chr9 40319626 40319786 -77542841 + MER58A DNA MER1_type 1 171 -53 228 118 0 0 chr9 40319800 40319834 -77542793 + MLT1H LTR MaLR 508 541 -8 462 273 60 60 chr9 40320239 40320539 -77542088 + L2 LINE L2 2862 3161 -111 22 0 0 0 chr9 40320653 40320675 -77541952 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 40320836 40320857 -77541770 + AT_rich Low_complexity Low_complexity 1 21 0 227 333 0 0 chr9 40321300 40321372 -77541255 + (CA)n Simple_repeat Simple_repeat 2 73 0 1416 153 113 4 chr9 40321709 40321957 -77540670 + AluJo SINE Alu 1 275 -37 485 229 97 23 chr9 40322261 40322436 -77540191 + MER5A DNA MER1_type 2 189 0 204 97 0 0 chr9 40324257 40324288 -77538339 + (CAGGG)n Simple_repeat Simple_repeat 3 33 0 320 253 11 32 chr9 40324327 40324422 -77538205 + MIR3 SINE MIR 62 154 -54 28 71 0 0 chr9 40324879 40324935 -77537692 + GC_rich Low_complexity Low_complexity 1 56 0 34 73 0 28 chr9 40325519 40325628 -77536999 + GC_rich Low_complexity Low_complexity 1 106 0 27 62 0 0 chr9 40326024 40326072 -77536555 + GC_rich Low_complexity Low_complexity 1 48 0 282 190 29 58 chr9 40326133 40326270 -77536357 + (CCCCG)n Simple_repeat Simple_repeat 2 134 0 2399 68 0 10 chr9 40326925 40327217 -77535410 + AluSg1 SINE Alu 1 289 -20 271 57 0 0 chr9 40327224 40327259 -77535368 - MIR SINE MIR -62 146 112 195 303 67 22 chr9 40327865 40327954 -77534673 - MIR3 SINE MIR -106 102 10 288 0 0 0 chr9 40328178 40328210 -77534417 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 342 0 0 0 chr9 40328209 40328247 -77534380 + (GA)n Simple_repeat Simple_repeat 1 38 0 293 241 193 35 chr9 40329151 40329296 -77533331 - MIR3 SINE MIR -2 206 39 2145 105 33 13 chr9 40329588 40329893 -77532734 - AluY SINE Alu 0 311 1 2316 89 7 0 chr9 40329893 40330185 -77532442 - AluSp SINE Alu -19 294 1 255 333 50 64 chr9 40330413 40330868 -77531759 - L2 LINE L2 -227 3045 2594 207 259 37 0 chr9 40330871 40330925 -77531702 + L2 LINE L2 3217 3272 0 277 337 0 0 chr9 40331079 40331174 -77531453 - L2 LINE L2 -1017 2297 2203 * 1172 259 117 21 chr9 40331173 40331892 -77530735 + L2 LINE L2 2444 3313 0 551 202 8 8 chr9 40332014 40332143 -77530484 - L1MA9 LINE L1 -36 6276 6148 9078 114 61 56 chr9 40332143 40333967 -77528660 + pTR5 LTR ERV1 71 2429 -9 3928 168 25 64 chr9 40333967 40334331 -77528296 - L1MA9 LINE L1 -161 6151 5774 1875 153 0 38 chr9 40334331 40334644 -77527983 - AluJb SINE Alu -10 302 2 784 104 0 0 chr9 40334647 40334762 -77527865 - L1MA3 LINE L1 0 6305 6191 3928 168 25 64 chr9 40334762 40335224 -77527403 - L1MA9 LINE L1 -540 5772 5294 2129 131 6 13 chr9 40335224 40335537 -77527090 - AluSx SINE Alu -1 311 1 3928 168 25 64 chr9 40335537 40335580 -77527047 - L1MA9 LINE L1 -1018 5294 5251 2346 79 10 3 chr9 40335580 40335872 -77526755 + AluSg1 SINE Alu 1 294 -15 3928 168 25 64 chr9 40335872 40336438 -77526189 - L1MA9 LINE L1 -1061 5251 4738 1659 163 30 40 chr9 40337343 40337478 -77525149 + AluJb SINE Alu 1 136 -176 1914 128 20 20 chr9 40337478 40337775 -77524852 + AluSx SINE Alu 15 311 -1 1659 163 30 40 chr9 40337775 40337939 -77524688 + AluJb SINE Alu 136 297 -15 256 247 49 12 chr9 40337957 40338038 -77524589 + MER53 DNA DNA 105 188 -1 288 257 119 0 chr9 40339096 40339205 -77523422 + AluSp SINE Alu 12 133 -170 1943 202 23 2 chr9 40339331 40339766 -77522861 + L1MB7 LINE L1 4419 4862 -1284 1340 121 109 59 chr9 40339772 40339918 -77522709 - L1MA8 LINE L1 -1 6290 6153 2198 123 0 22 chr9 40339918 40340236 -77522391 - AluSx SINE Alu -1 311 1 1340 121 109 59 chr9 40340236 40340427 -77522200 - L1MA8 LINE L1 -138 6153 5936 24 32 0 0 chr9 40340428 40340459 -77522168 + AT_rich Low_complexity Low_complexity 1 31 0 641 174 0 0 chr9 40340459 40340568 -77522059 - FLAM_C SINE Alu -27 116 8 1441 112 9 0 chr9 40340575 40340799 -77521828 - L1MA8 LINE L1 -343 5948 5723 * 3995 162 111 6 chr9 40340795 40341033 -77521594 + L1MB7 LINE L1 4954 5166 -1018 1739 162 10 14 chr9 40341033 40341323 -77521304 + AluJo SINE Alu 1 289 -23 3995 162 111 6 chr9 40341323 40342157 -77520470 + L1MB7 LINE L1 5166 6165 -19 482 253 39 101 chr9 40342351 40342608 -77520019 - L3 LINE CR1 -76 1501 1261 2260 125 7 0 chr9 40342889 40343192 -77519435 - AluSq SINE Alu -8 305 1 1836 145 22 0 chr9 40343540 40343841 -77518786 - AluJb SINE Alu 0 307 1 284 288 79 29 chr9 40343847 40343999 -77518628 + MIR SINE MIR 52 207 -55 208 313 152 18 chr9 40344304 40344416 -77518211 - L2 LINE L2 -1 3312 3186 2126 113 28 3 chr9 40344465 40344756 -77517871 + AluSx SINE Alu 1 298 -14 1048 231 15 23 chr9 40344918 40345178 -77517449 - MIR SINE MIR 0 262 5 2361 118 3 0 chr9 40345431 40345737 -77516890 + AluSx SINE Alu 1 307 -5 451 287 2 7 chr9 40346337 40346501 -77516126 + MIR SINE MIR 28 146 -62 229 265 15 15 chr9 40346747 40346815 -77515812 + MIR SINE MIR 24 91 -117 426 330 119 32 chr9 40347189 40347559 -77515068 - L2 LINE L2 -18 3254 2853 925 184 0 0 chr9 40347672 40347813 -77514814 - FRAM SINE Alu -22 154 14 246 250 143 7 chr9 40348254 40348394 -77514233 - L1ME4a LINE L1 -3 6118 5960 916 287 58 17 chr9 40348395 40348743 -77513884 - L1ME4a LINE L1 -193 5928 5567 374 272 59 41 chr9 40349300 40349410 -77513217 + L1ME LINE L1 5511 5627 -494 1585 178 16 13 chr9 40349410 40349714 -77512913 - AluJo SINE Alu -7 305 1 374 272 59 41 chr9 40349714 40349772 -77512855 + L1ME LINE L1 5627 5682 -439 312 167 0 19 chr9 40349773 40349827 -77512800 + MER66B LTR ERV1 294 346 -140 2057 132 6 3 chr9 40350025 40350336 -77512291 + AluSx SINE Alu 1 312 0 409 309 210 29 chr9 40350852 40351269 -77511358 - L2 LINE L2 0 3313 2778 1773 123 14 20 chr9 40351269 40351587 -77511040 + AluJo SINE Alu 1 312 0 409 309 210 29 chr9 40351587 40351660 -77510967 - L2 LINE L2 -535 2778 2719 396 40 0 0 chr9 40351668 40351718 -77510909 + (TG)n Simple_repeat Simple_repeat 1 50 0 25 0 0 0 chr9 40351765 40351790 -77510837 + AT_rich Low_complexity Low_complexity 1 25 0 341 265 37 49 chr9 40351802 40351832 -77510795 - L1PA16 LINE L1 -312 5854 5526 2075 120 0 3 chr9 40351832 40352131 -77510496 - AluSx SINE Alu -14 298 1 769 165 18 12 chr9 40352131 40352295 -77510332 - L1MB8 LINE L1 -352 5826 5662 753 188 13 7 chr9 40352289 40352443 -77510184 - L1M4 LINE L1 -6380 162 8 * 1798 119 70 3 chr9 40352463 40352749 -77509878 - AluSg SINE Alu -4 306 2 225 346 38 62 chr9 40352859 40353070 -77509557 + L2 LINE L2 2440 2645 -669 1278 187 50 40 chr9 40353253 40353414 -77509213 - L1MC2 LINE L1 -72 6272 6105 1541 176 3 33 chr9 40353414 40353715 -77508912 - AluJo SINE Alu -20 292 1 1278 187 50 40 chr9 40353715 40353853 -77508774 - L1MC2 LINE L1 -239 6105 5970 2111 123 0 0 chr9 40353887 40354187 -77508440 + AluSx SINE Alu 1 300 -12 248 236 0 0 chr9 40354239 40354294 -77508333 + CT-rich Low_complexity Low_complexity 2 56 0 392 272 96 7 chr9 40354295 40354431 -77508196 - MIR SINE MIR -83 179 32 2261 76 10 19 chr9 40354458 40354772 -77507855 - AluY SINE Alu 0 311 1 262 376 57 21 chr9 40354793 40354934 -77507693 + L2 LINE L2 3122 3267 -5 2243 102 0 0 chr9 40356728 40357032 -77505595 - AluSq SINE Alu -9 304 1 285 307 97 23 chr9 40357208 40357384 -77505243 - MER5A DNA MER1_type 0 189 1 246 253 13 38 chr9 40357819 40357898 -77504729 - MIR SINE MIR -166 96 20 1245 241 92 48 chr9 40357958 40358481 -77504146 - L1MC4 LINE L1 0 8042 7497 218 372 149 16 chr9 40358650 40358838 -77503789 + MIR SINE MIR 50 262 0 264 261 71 17 chr9 40359523 40359643 -77502984 - LTR33A LTR ERVL -344 179 35 655 291 20 72 chr9 40359700 40360047 -77502580 + MLT1K LTR MaLR 258 586 -2 2021 105 37 10 chr9 40360156 40360452 -77502175 + AluSx SINE Alu 1 304 -8 1185 172 0 9 chr9 40360522 40360743 -77501884 - AluJb SINE Alu -8 304 86 239 185 31 46 chr9 40361714 40361779 -77500848 + MIR SINE MIR 82 145 -63 568 161 198 31 chr9 40363602 40363764 -77498863 + MER53 DNA DNA 1 189 0 447 293 66 56 chr9 40363955 40364153 -77498474 + L2 LINE L2 3073 3272 0 851 206 178 0 chr9 40364163 40364377 -77498250 - MIR SINE MIR -6 256 5 180 217 0 0 chr9 40364382 40364428 -77498199 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 3665 156 25 29 chr9 40365062 40365113 -77497514 - L1MB2 LINE L1 -7 6164 6114 1622 173 17 3 chr9 40365113 40365413 -77497214 - AluSx SINE Alu -8 304 1 3665 156 25 29 chr9 40365413 40366078 -77496549 - L1MB2 LINE L1 -57 6114 5451 313 264 58 13 chr9 40366409 40366564 -77496063 - L1ME4a LINE L1 0 6121 5960 1959 115 14 11 chr9 40367158 40367445 -77495182 - AluSx SINE Alu -24 288 1 209 322 0 0 chr9 40367593 40367652 -77494975 + MIR SINE MIR 204 262 0 2031 141 0 3 chr9 40367803 40368116 -77494511 - AluSx SINE Alu 0 312 1 393 22 0 0 chr9 40368177 40368223 -77494404 + (TG)n Simple_repeat Simple_repeat 2 47 0 2691 127 42 0 chr9 40368326 40368735 -77493892 + MSTB LTR MaLR 1 426 0 2806 0 0 0 chr9 40368976 40369284 -77493343 + AluYa8 SINE Alu 1 308 -2 419 294 20 46 chr9 40369869 40370022 -77492605 - MIR3 SINE MIR -10 198 50 321 261 127 35 chr9 40370413 40370555 -77492072 - L1ME4a LINE L1 -252 5869 5715 237 297 172 0 chr9 40370696 40370841 -77491786 - L1ME4a LINE L1 -2212 3934 3765 572 295 103 67 chr9 40370887 40371352 -77491275 - L1ME4a LINE L1 -2369 3777 3296 2164 117 0 0 chr9 40371655 40371963 -77490664 - AluSx SINE Alu -4 308 1 322 317 181 34 chr9 40373176 40373469 -77489158 - MLT1K LTR MaLR -122 466 131 333 131 12 24 chr9 40373496 40373511 -77489116 + GA-rich Low_complexity Low_complexity 1 15 -68 1610 187 10 3 chr9 40373511 40373633 -77488994 + AluJo SINE Alu 6 126 -186 207 0 0 0 chr9 40373633 40373656 -77488971 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1610 187 10 3 chr9 40373656 40373833 -77488794 + AluJo SINE Alu 126 307 -5 333 131 12 24 chr9 40373833 40373901 -77488726 + GA-rich Low_complexity Low_complexity 15 83 0 255 299 66 103 chr9 40374018 40374366 -77488261 - L2 LINE L2 -96 3176 2842 243 0 0 0 chr9 40374823 40374850 -77487777 + (TA)n Simple_repeat Simple_repeat 1 27 0 311 265 69 16 chr9 40374875 40375064 -77487563 - L1ME4a LINE L1 -3 6118 5920 4257 163 61 45 chr9 40375242 40375442 -77487185 - L1MB7 LINE L1 -16 6168 5973 2075 135 0 0 chr9 40375442 40375738 -77486889 - AluSx SINE Alu -16 296 1 4257 163 61 45 chr9 40375738 40376111 -77486516 - L1MB7 LINE L1 -211 5973 5608 2133 107 13 0 chr9 40376111 40376411 -77486216 + AluSg SINE Alu 1 304 -6 4257 163 61 45 chr9 40376411 40376566 -77486061 - L1MB7 LINE L1 -576 5608 5457 2059 125 13 19 chr9 40376566 40376879 -77485748 - AluJo SINE Alu -1 311 1 4257 163 61 45 chr9 40376879 40377170 -77485457 - L1MB7 LINE L1 -727 5457 5123 1975 120 40 0 chr9 40377219 40377519 -77485108 - AluSx SINE Alu 0 312 1 490 291 52 24 chr9 40377939 40378149 -77484478 + MIR SINE MIR 37 252 -10 231 346 95 34 chr9 40378637 40378816 -77483811 + MIR3 SINE MIR 1 190 -18 285 303 16 33 chr9 40379092 40379214 -77483413 + L2 LINE L2 2638 2757 -557 428 269 70 9 chr9 40379975 40380138 -77482489 - MIR3 SINE MIR -23 185 15 362 297 14 26 chr9 40380272 40380444 -77482183 + GA-rich Low_complexity Low_complexity 1 288 0 183 326 22 0 chr9 40380792 40380838 -77481789 + L3 LINE CR1 1519 1565 -12 226 351 53 0 chr9 40381016 40381110 -77481517 - MIR3 SINE MIR 0 208 110 225 180 0 62 chr9 40381741 40381919 -77480708 + (TGG)n Simple_repeat Simple_repeat 3 169 0 305 356 6 6 chr9 40381956 40382133 -77480494 + (TGG)n Simple_repeat Simple_repeat 2 178 0 545 281 0 27 chr9 40382163 40382246 -77480381 + (TGG)n Simple_repeat Simple_repeat 1 85 -95 2029 209 25 39 chr9 40382246 40382758 -77479869 - MLT1D LTR MaLR 0 505 1 545 281 0 27 chr9 40382758 40382859 -77479768 + (TGG)n Simple_repeat Simple_repeat 85 180 0 1971 125 7 0 chr9 40383175 40383464 -77479163 + AluSx SINE Alu 1 291 -21 338 328 138 0 chr9 40384783 40384870 -77477757 - MIR SINE MIR -10 252 178 1717 149 4 4 chr9 40384870 40385151 -77477476 - AluSx SINE Alu -31 281 1 338 328 138 0 chr9 40385151 40385237 -77477390 - MIR SINE MIR -84 178 55 479 229 169 60 chr9 40385986 40386137 -77476490 + L2 LINE L2 2851 2984 -329 183 42 0 0 chr9 40386137 40386161 -77476466 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 479 229 169 60 chr9 40386161 40386276 -77476351 + L2 LINE L2 2984 3146 -167 1325 135 38 135 chr9 40386276 40386669 -77475958 - LTR37B LTR ERV1 0 468 114 448 240 71 26 chr9 40386670 40386824 -77475803 + MER3 DNA MER1_type 1 161 -48 215 188 62 16 chr9 40386842 40387255 -77475372 + (TTATA)n Simple_repeat Simple_repeat 4 137 0 250 135 54 14 chr9 40386898 40386937 -77475690 + (TA)n Simple_repeat Simple_repeat 1 37 -40 1523 199 0 3 chr9 40386937 40387223 -77475404 + AluSx SINE Alu 1 285 -27 250 135 54 14 chr9 40387223 40387257 -77475370 + (TA)n Simple_repeat Simple_repeat 37 77 0 330 165 38 0 chr9 40387293 40387372 -77475255 + MER3 DNA MER1_type 128 209 0 280 160 20 0 chr9 40387330 40387380 -77475247 - MER3 DNA MER1_type -119 90 40 * 539 234 66 36 chr9 40387455 40387622 -77475005 + L2 LINE L2 3142 3313 0 220 185 15 46 chr9 40388189 40388254 -77474373 + CT-rich Low_complexity Low_complexity 3 65 0 189 252 243 0 chr9 40388687 40388798 -77473829 - MIR3 SINE MIR -60 148 11 537 277 43 0 chr9 40389210 40389351 -77473276 - MIR3 SINE MIR -21 187 41 205 161 0 0 chr9 40389400 40389431 -77473196 + (CATCT)n Simple_repeat Simple_repeat 3 33 0 296 151 68 55 chr9 40389989 40390062 -77472565 - MLT1K LTR MaLR -5 583 510 3592 167 30 37 chr9 40391490 40392063 -77470564 - L1MB3 LINE L1 -7 6176 5608 1437 153 24 103 chr9 40392063 40392403 -77470224 - AluYb8 SINE Alu -5 313 1 3592 167 30 37 chr9 40392403 40392564 -77470063 - L1MB3 LINE L1 -575 5608 5447 203 250 95 17 chr9 40393160 40393276 -77469351 + L2 LINE L2 1980 2104 -1210 401 279 6 51 chr9 40394493 40394651 -77467976 - L2 LINE L2 -912 2402 2252 669 207 8 117 chr9 40394653 40394909 -77467718 - MLT1K LTR MaLR 0 588 361 941 306 50 62 chr9 40395801 40396367 -77466260 - L1MC4a LINE L1 -4 6117 5559 339 323 89 13 chr9 40396486 40396644 -77465983 - L1MC4a LINE L1 -2258 5550 5381 491 281 137 28 chr9 40396677 40397107 -77465520 - L1ME LINE L1 -304 6097 5621 324 256 23 83 chr9 40397697 40397830 -77464797 - L1ME LINE L1 -4323 2103 1979 282 29 0 0 chr9 40397850 40397885 -77464742 + (TG)n Simple_repeat Simple_repeat 2 36 0 1898 112 65 10 chr9 40398041 40398335 -77464292 - AluSx SINE Alu -1 311 2 930 130 68 7 chr9 40398363 40398507 -77464120 - MER30B DNA MER1_type 0 230 78 7923 160 170 23 chr9 40398507 40400037 -77462590 + MER52A LTR ERV1 1 1755 0 564 95 0 0 chr9 40400038 40400112 -77462515 - MER30B DNA MER1_type -113 77 4 380 213 12 0 chr9 40400115 40400195 -77462432 - L1ME2 LINE L1 -39 6125 6045 930 110 7 7 chr9 40400200 40400336 -77462291 + U8 snRNA snRNA 1 136 0 3178 189 27 24 chr9 40400378 40401049 -77461578 - L1ME2 LINE L1 -112 6052 5380 588 129 139 0 chr9 40401135 40401236 -77461391 - AluJo SINE Alu -177 135 21 461 292 116 69 chr9 40401238 40401644 -77460983 - L1ME2 LINE L1 -1054 5092 4650 2324 187 87 13 chr9 40401644 40402114 -77460513 + MLT1D LTR MaLR 1 505 0 461 292 116 69 chr9 40402114 40402238 -77460389 - L1ME2 LINE L1 -1496 4650 4533 992 252 22 0 chr9 40402306 40402528 -77460099 - LTR16C LTR ERVL -9 482 256 1173 254 134 20 chr9 40402830 40403239 -77459388 + LTR16C LTR ERVL 36 491 0 305 211 18 0 chr9 40404164 40404221 -77458406 - MIR SINE MIR -69 139 82 1571 174 11 14 chr9 40404533 40404849 -77457778 + AluJb SINE Alu 1 315 0 410 332 97 0 chr9 40405197 40405414 -77457213 - L1ME4a LINE L1 -282 5839 5602 229 222 0 0 chr9 40405543 40405588 -77457039 + MIR SINE MIR 108 152 -110 1989 135 3 6 chr9 40405608 40405920 -77456707 - AluSq SINE Alu -2 311 1 228 303 15 15 chr9 40406064 40406130 -77456497 - L2 LINE L2 -21 3292 3227 357 326 53 8 chr9 40406529 40406661 -77455966 - MIR SINE MIR -39 223 86 217 234 52 91 chr9 40407178 40407255 -77455372 + MIR SINE MIR 30 103 -105 214 264 164 27 chr9 40407394 40407504 -77455123 + L2 LINE L2 3147 3271 -1 288 338 58 0 chr9 40407690 40407829 -77454798 + L2 LINE L2 3104 3250 -22 1959 147 11 72 chr9 40408061 40408342 -77454285 - MLT1A1 LTR MaLR 0 365 111 2264 112 0 0 chr9 40408342 40408647 -77453980 - AluSx SINE Alu -7 305 1 1959 147 11 72 chr9 40408647 40408739 -77453888 - MLT1A1 LTR MaLR -254 111 15 588 260 276 0 chr9 40408835 40409016 -77453611 + MIR SINE MIR 27 257 -5 2326 85 3 0 chr9 40409134 40409439 -77453188 + AluSp SINE Alu 1 306 -7 440 180 63 36 chr9 40409483 40409594 -77453033 - MIR3 SINE MIR -81 127 14 422 278 113 14 chr9 40409994 40410206 -77452421 + L2 LINE L2 2555 2787 -527 706 80 0 0 chr9 40410230 40410318 -77452309 + AluSc SINE Alu 2 89 -220 1720 200 145 20 chr9 40410480 40410929 -77451698 - MLT1D LTR MaLR 0 505 1 709 218 94 59 chr9 40412272 40412478 -77450149 - MIR SINE MIR -14 248 37 342 234 95 108 chr9 40412511 40412669 -77449958 - MIR3 SINE MIR -17 191 36 928 238 48 65 chr9 40413141 40413494 -77449133 - L1ME3A LINE L1 -219 5951 5605 470 186 152 28 chr9 40413556 40413701 -77448926 - LTR50 LTR ERVL -617 178 16 330 269 198 44 chr9 40414180 40414299 -77448328 - L1ME4a LINE L1 -72 6049 5950 1514 177 10 47 chr9 40414299 40414598 -77448029 - AluJo SINE Alu -14 288 1 330 269 198 44 chr9 40414598 40414705 -77447922 - L1ME4a LINE L1 -171 5950 5788 230 204 41 0 chr9 40414712 40414761 -77447866 - MLT1K LTR MaLR -20 568 518 594 270 87 61 chr9 40415112 40415543 -77447084 - L1ME4a LINE L1 -376 5745 5301 255 333 139 14 chr9 40415626 40415770 -77446857 + L2 LINE L2 3106 3267 -5 262 241 259 0 chr9 40415869 40415977 -77446650 - L2 LINE L2 0 3272 3137 802 233 23 51 chr9 40416091 40416306 -77446321 - MER58C DNA MER1_type -6 209 1 313 157 229 36 chr9 40416315 40416398 -77446229 - MIR3 SINE MIR -6 202 104 284 186 145 57 chr9 40417204 40417328 -77445299 + MIR3 SINE MIR 64 198 -10 218 358 8 0 chr9 40417620 40417743 -77444884 + (TG)n Simple_repeat Simple_repeat 1 124 0 383 214 149 91 chr9 40417955 40418053 -77444574 - MER5A DNA MER1_type 0 189 77 1712 182 0 19 chr9 40418053 40418360 -77444267 - AluJo SINE Alu -11 301 1 383 214 149 91 chr9 40418360 40418415 -77444212 - MER5A DNA MER1_type -112 77 27 1109 211 4 40 chr9 40418471 40418543 -77444084 + MER58A DNA MER1_type 5 78 -2342 917 210 17 6 chr9 40418543 40418719 -77443908 - MER45A DNA AcHobo 0 178 1 1109 211 4 40 chr9 40418719 40418874 -77443753 + MER58A DNA MER1_type 78 224 0 439 219 70 15 chr9 40418891 40419046 -77443581 - MER5B DNA MER1_type -7 171 15 705 250 103 0 chr9 40420036 40420220 -77442407 - MIR SINE MIR -52 210 8 2125 121 0 0 chr9 40421193 40421490 -77441137 + AluSg SINE Alu 1 297 -13 680 101 28 0 chr9 40421516 40421625 -77441002 + CT-rich Low_complexity Low_complexity 4 115 0 2034 142 3 0 chr9 40421625 40421934 -77440693 - AluSx SINE Alu -2 310 1 475 189 90 18 chr9 40422045 40422156 -77440471 + LTR34 LTR ERV1 48 166 -533 3318 91 83 4 chr9 40422256 40422751 -77439876 + LTR34 LTR ERV1 166 699 0 1423 227 59 59 chr9 40422802 40422972 -77439655 + MLT1J LTR MaLR 52 221 -290 2163 104 7 3 chr9 40422972 40423279 -77439348 + AluSc SINE Alu 1 308 -1 1423 227 59 59 chr9 40423279 40423531 -77439096 + MLT1J LTR MaLR 220 474 -37 494 82 0 0 chr9 40423579 40423639 -77438988 + LTR10A LTR ERV1 1 60 -549 1015 86 0 7 chr9 40423639 40423786 -77438841 - LTR10A LTR ERV1 0 609 416 381 300 91 18 chr9 40424591 40424811 -77437816 + MER113 DNA MER1_type? 245 480 -41 818 223 0 12 chr9 40424896 40425062 -77437565 - FRAM SINE Alu -2 164 1 235 254 65 162 chr9 40425121 40425306 -77437321 - MIR3 SINE MIR -5 203 37 220 184 161 69 chr9 40426295 40426382 -77436245 - MIR SINE MIR -50 212 118 222 37 0 0 chr9 40426709 40426736 -77435891 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 745 258 58 44 chr9 40427693 40427968 -77434659 + LTR33 LTR ERVL 1 279 -242 1268 189 0 0 chr9 40427969 40428191 -77434436 - AluSx SINE Alu -90 222 1 2008 115 0 0 chr9 40428249 40428527 -77434100 + AluSg SINE Alu 1 278 -32 251 0 59 0 chr9 40428530 40428564 -77434063 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 339 224 13 0 chr9 40428570 40428646 -77433981 + LTR33 LTR ERVL 328 404 -117 296 294 20 10 chr9 40429798 40429900 -77432727 + MIR SINE MIR 45 147 -61 416 192 150 31 chr9 40430378 40430520 -77432107 + MIR SINE MIR 36 192 -63 1301 81 17 0 chr9 40430907 40431081 -77431546 - AluSx SINE Alu -135 177 1 6877 186 25 8 chr9 40431081 40431297 -77431330 - L1 LINE L1 -2356 3790 3579 2466 71 0 0 chr9 40431297 40431605 -77431022 - AluY SINE Alu -3 308 1 6877 186 25 8 chr9 40431605 40432825 -77429802 - L1 LINE L1 -2567 3579 2330 2698 216 104 31 chr9 40432849 40433168 -77429459 + L1ME1 LINE L1 4811 5105 -1061 1985 109 0 11 chr9 40433168 40433480 -77429147 + AluSx SINE Alu 6 312 0 2698 216 104 31 chr9 40433480 40434428 -77428199 + L1ME1 LINE L1 5105 6161 -5 372 318 42 17 chr9 40434656 40434892 -77427735 + L2 LINE L2 2836 3077 -195 507 285 35 0 chr9 40434918 40435062 -77427565 + MIR SINE MIR 106 254 -8 185 286 0 0 chr9 40435186 40435228 -77427399 + L2 LINE L2 3136 3177 -95 257 239 28 14 chr9 40435251 40435322 -77427305 - L2 LINE L2 -5 3308 3237 578 198 141 22 chr9 40435357 40435523 -77427104 + MIR SINE MIR 13 178 -54 1296 124 0 0 chr9 40435527 40435720 -77426907 - AluSg/x SINE Alu 0 310 118 4092 29 0 15 chr9 40435820 40436301 -77426326 + SVA Other Other 913 1386 0 291 268 0 37 chr9 40436645 40436727 -77425900 - LTR16C LTR ERVL 0 491 413 250 173 96 0 chr9 40437254 40437306 -77425321 - L1ME3 LINE L1 -12 6150 6094 2347 89 0 0 chr9 40437389 40437691 -77424936 + AluSx SINE Alu 1 302 -10 2517 287 32 7 chr9 40438006 40438136 -77424491 - ERVL LTR ERVL -436 5328 5203 2323 68 0 3 chr9 40438136 40438443 -77424184 - AluY SINE Alu -5 306 1 2517 287 32 7 chr9 40438443 40439051 -77423576 - ERVL LTR ERVL -561 5203 4571 659 322 8 19 chr9 40439431 40439692 -77422935 - MLT2E LTR ERVL -14 614 357 254 296 6 111 chr9 40439770 40439932 -77422695 - MLT2E LTR ERVL -483 145 1 324 254 0 0 chr9 40439932 40439999 -77422628 + L1ME4a LINE L1 5745 5811 -310 1555 201 19 79 chr9 40439999 40440416 -77422211 - MLT2C1 LTR ERVL 0 397 6 250 339 35 0 chr9 40440567 40440741 -77421886 + L1ME4a LINE L1 5939 6118 -3 251 277 24 0 chr9 40442029 40442112 -77420515 + GA-rich Low_complexity Low_complexity 2 86 0 193 348 134 0 chr9 40442227 40442339 -77420288 - L2 LINE L2 -24 3248 3122 223 261 31 0 chr9 40442374 40442439 -77420188 + L2 LINE L2 3188 3254 -18 185 382 0 0 chr9 40442459 40442535 -77420092 - L2 LINE L2 -12 3301 3226 381 295 114 42 chr9 40442801 40442994 -77419633 + MLT1I LTR MaLR 160 366 -43 412 228 203 87 chr9 40443726 40444218 -77418409 + LTR67 LTR ERVL 2 550 -7 277 303 156 16 chr9 40444588 40444710 -77417917 + MER5A DNA MER1_type 3 141 -48 347 324 131 12 chr9 40445115 40445359 -77417268 - L2 LINE L2 -832 2482 2210 210 71 0 0 chr9 40445537 40445565 -77417062 + (CAGTT)n Simple_repeat Simple_repeat 5 32 0 209 227 0 0 chr9 40445597 40445641 -77416986 - L2 LINE L2 -8 3305 3262 652 314 114 36 chr9 40446049 40446434 -77416193 - L3 LINE CR1 -117 1460 1046 573 229 0 0 chr9 40446709 40446818 -77415809 + MER5A DNA MER1_type 4 112 -77 2463 166 9 14 chr9 40446850 40447278 -77415349 - MSTB LTR MaLR 0 426 1 326 324 131 12 chr9 40447349 40447660 -77414967 + L2 LINE L2 2686 3041 -231 1314 222 60 106 chr9 40447695 40448150 -77414477 + MLT2B1 LTR ERVL 1 520 0 229 342 250 0 chr9 40448180 40448300 -77414327 + L2 LINE L2 3107 3256 -16 289 210 30 140 chr9 40448901 40449001 -77413626 + MER91A DNA MER1_type 1 89 -101 254 140 0 60 chr9 40449043 40449093 -77413534 + MER91B DNA MER1_type 84 130 -60 25 0 0 0 chr9 40449719 40449744 -77412883 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr9 40449973 40450001 -77412626 + GC_rich Low_complexity Low_complexity 1 28 0 2644 90 25 82 chr9 40450052 40450818 -77411809 + SVA Other Other 393 868 -520 262 200 67 44 chr9 40450982 40451072 -77411555 + MIR3 SINE MIR 87 178 -30 469 297 97 0 chr9 40451452 40451617 -77411010 - MIR SINE MIR -8 254 74 604 197 72 7 chr9 40452728 40452880 -77409747 + Charlie8 DNA MER1_type 39 200 -2217 294 260 120 90 chr9 40453394 40453518 -77409109 + L2 LINE L2 2951 3070 -202 4277 92 0 0 chr9 40453518 40454072 -77408555 + MER41A LTR ERV1 1 554 0 294 260 120 90 chr9 40454072 40454247 -77408380 + L2 LINE L2 3070 3259 -13 1941 141 23 0 chr9 40454284 40454589 -77408038 + AluJb SINE Alu 1 312 0 341 284 132 53 chr9 40454607 40454797 -77407830 + MIR SINE MIR 37 241 -21 242 359 0 13 chr9 40454836 40454914 -77407713 - MIR SINE MIR -90 118 42 216 276 122 49 chr9 40455506 40455629 -77406998 + MIR3 SINE MIR 15 146 -62 314 245 226 0 chr9 40455649 40455751 -77406876 - L2 LINE L2 -16 3297 3173 1827 153 125 11 chr9 40456463 40456816 -77405811 - MSTD LTR MaLR -2 394 2 273 239 45 30 chr9 40456826 40456893 -77405734 - MIR3 SINE MIR -51 157 90 446 257 80 57 chr9 40456953 40457128 -77405499 - MIR SINE MIR -82 180 2 582 240 33 0 chr9 40457169 40457319 -77405308 + MER5B DNA MER1_type 1 155 -23 321 296 0 11 chr9 40457355 40457443 -77405184 - MER5A DNA MER1_type -93 96 10 694 232 30 42 chr9 40457686 40457732 -77404895 - MER96 DNA MER1_type? 0 175 130 2119 93 0 10 chr9 40457732 40458058 -77404569 - AluY SINE Alu 0 311 1 694 232 30 42 chr9 40458058 40458179 -77404448 - MER96 DNA MER1_type? -45 130 10 939 179 27 5 chr9 40458371 40458555 -77404072 + MER5A DNA MER1_type 2 189 0 195 215 154 60 chr9 40458562 40458711 -77403916 + MIR3 SINE MIR 30 192 -16 987 139 12 17 chr9 40459231 40459430 -77403197 - MSTD LTR MaLR -169 196 1 579 218 78 115 chr9 40459430 40459673 -77402954 - MIR SINE MIR -25 237 4 309 214 10 97 chr9 40459774 40459877 -77402750 + MIR SINE MIR 94 187 -75 270 195 74 4 chr9 40460027 40460113 -77402514 - MIR SINE MIR -68 140 49 1595 230 48 58 chr9 40460920 40461510 -77401117 + L1ME2 LINE L1 5588 6164 0 464 233 112 73 chr9 40461540 40461746 -77400881 + L1MC4 LINE L1 7826 8039 -3 1897 122 0 44 chr9 40461776 40462076 -77400551 - AluSq SINE Alu 0 424 141 2226 86 0 0 chr9 40462076 40462400 -77400227 - AluY SINE Alu 0 311 1 1897 122 0 44 chr9 40462400 40462536 -77400091 - AluSq SINE Alu -283 141 1 2253 110 51 25 chr9 40462560 40462915 -77399712 - THE1B LTR MaLR 0 364 1 336 293 90 12 chr9 40462934 40463101 -77399526 - L1MC/D LINE L1 -2019 5789 5610 293 245 160 0 chr9 40463125 40463219 -77399408 - MIR SINE MIR -79 129 21 1922 139 7 13 chr9 40463449 40463759 -77398868 + AluSx SINE Alu 5 312 0 4009 174 35 3 chr9 40463853 40464539 -77398088 + L1MA4 LINE L1 3 710 -4618 5907 214 35 47 chr9 40464568 40466026 -77396601 + L1MA4 LINE L1 772 2195 -4133 2039 138 0 0 chr9 40466026 40466330 -77396297 + AluSx SINE Alu 1 304 -8 5907 214 35 47 chr9 40466330 40466895 -77395732 + L1MA4 LINE L1 2195 2765 -3563 946 198 0 0 chr9 40466915 40467087 -77395540 + FRAM SINE Alu 1 166 -10 9432 153 31 18 chr9 40467090 40468271 -77394356 + L1MA4 LINE L1 3747 4912 -1485 2145 117 0 0 chr9 40468271 40468569 -77394058 + AluSx SINE Alu 1 298 -14 9432 153 31 18 chr9 40468569 40468761 -77393866 + L1MA4 LINE L1 4912 5100 -1297 1691 168 0 30 chr9 40468761 40469065 -77393562 + AluJo SINE Alu 3 297 -15 221 0 0 33 chr9 40469068 40469098 -77393529 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 9432 153 31 18 chr9 40469098 40469603 -77393024 + L1MA4 LINE L1 5101 5654 -743 3812 148 14 2 chr9 40469684 40470327 -77392300 + L1MA4 LINE L1 5825 6475 -7 2812 122 69 4 chr9 40471156 40471606 -77391021 + LTR10A LTR ERV1 69 547 -62 357 232 24 12 chr9 40471895 40471977 -77390650 - MER5A DNA MER1_type -77 112 30 250 278 0 0 chr9 40472043 40472097 -77390530 + L2 LINE L2 3219 3272 0 308 214 79 11 chr9 40472105 40472194 -77390433 - MER103 DNA DNA -70 96 2 21 36 0 0 chr9 40473126 40473154 -77389473 + AT_rich Low_complexity Low_complexity 1 28 0 408 290 77 48 chr9 40473582 40473961 -77388666 + HAL1b LINE L1 351 740 -608 2357 83 0 0 chr9 40474102 40474403 -77388224 + AluY SINE Alu 1 301 -10 22 70 0 0 chr9 40474459 40474502 -77388125 + AT_rich Low_complexity Low_complexity 1 43 0 2606 159 96 11 chr9 40474768 40475289 -77387338 + L1MB4 LINE L1 5616 6180 0 450 0 0 0 chr9 40475422 40475472 -77387155 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 655 193 0 9 chr9 40475475 40475589 -77387038 - FLAM_C SINE Alu -26 117 5 1821 218 29 73 chr9 40475885 40477080 -77385547 - L1MC4 LINE L1 -262 7780 6483 1327 164 168 13 chr9 40477080 40477378 -77385249 + MER2 DNA MER2_type 1 344 0 1821 218 29 73 chr9 40477378 40477402 -77385225 - L1MC4 LINE L1 -1559 6483 6459 2117 159 19 65 chr9 40478278 40478706 -77383921 - MLT2D LTR ERVL -6 408 1 1755 198 37 26 chr9 40479125 40479504 -77383123 - MLT1B LTR MaLR -7 383 1 357 24 0 0 chr9 40480472 40480514 -77382113 + (TG)n Simple_repeat Simple_repeat 1 42 0 1540 184 11 46 chr9 40482053 40482087 -77380540 - L1MB8 LINE L1 -6 6172 6138 1783 150 155 26 chr9 40482087 40482467 -77380160 - MSTB1 LTR MaLR 0 432 4 1540 184 11 46 chr9 40482467 40482802 -77379825 - L1MB8 LINE L1 -40 6138 5816 356 333 12 29 chr9 40483516 40483687 -77378940 + L1M4 LINE L1 3717 3884 -2262 2454 136 57 2 chr9 40483832 40484233 -77378394 - MSTB1 LTR MaLR 0 419 14 274 277 143 8 chr9 40484233 40484352 -77378275 - L1MC4 LINE L1 -593 7449 7315 544 219 73 0 chr9 40484472 40484609 -77378018 - MIR SINE MIR 0 262 116 192 77 0 0 chr9 40484691 40484717 -77377910 + (A)n Simple_repeat Simple_repeat 1 26 0 1780 142 22 26 chr9 40484740 40484879 -77377748 + AluSx SINE Alu 1 139 -173 2308 86 3 0 chr9 40484879 40485183 -77377444 + AluSp SINE Alu 1 305 -8 1780 142 22 26 chr9 40485183 40485354 -77377273 + AluSx SINE Alu 139 310 -2 195 42 0 0 chr9 40486349 40486373 -77376254 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 403 277 104 42 chr9 40486463 40486723 -77375904 - MLT1J LTR MaLR -9 502 227 1116 199 99 70 chr9 40486765 40486807 -77375820 - Zaphod DNA AcHobo 0 4031 3992 1690 123 21 99 chr9 40486807 40487141 -77375486 + AluYb8 SINE Alu 1 308 -10 1116 199 99 70 chr9 40487141 40487524 -77375103 - Zaphod DNA AcHobo -39 3992 3594 1816 165 76 3 chr9 40487531 40487846 -77374781 + MER1B DNA MER1_type 1 338 -1 844 241 61 5 chr9 40487855 40488067 -77374560 + MER58A DNA MER1_type 1 224 0 2654 233 43 68 chr9 40488084 40488161 -77374466 - Zaphod DNA AcHobo -3061 970 893 2180 126 0 0 chr9 40488161 40488462 -77374165 + AluSx SINE Alu 1 301 -11 2654 233 43 68 chr9 40488462 40488561 -77374066 - Zaphod DNA AcHobo -3138 893 793 519 139 50 20 chr9 40488561 40488662 -77373965 + U13 snRNA snRNA 1 104 0 2654 233 43 68 chr9 40488662 40489400 -77373227 - Zaphod DNA AcHobo -3238 793 38 1688 199 65 8 chr9 40489400 40489772 -77372855 - MSTD LTR MaLR -2 394 2 417 20 0 0 chr9 40489774 40489824 -77372803 + (TG)n Simple_repeat Simple_repeat 1 50 0 342 0 0 0 chr9 40489823 40489861 -77372766 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 2654 233 43 68 chr9 40489824 40489903 -77372724 - Zaphod DNA AcHobo -3994 37 33 1108 189 112 45 chr9 40491909 40492221 -77370406 + MLT1D LTR MaLR 1 333 -172 1931 74 0 4 chr9 40492238 40492482 -77370145 + LTR8 LTR ERV1 1 243 -448 2964 108 5 5 chr9 40492763 40493170 -77369457 + LTR8 LTR ERV1 246 652 -39 492 165 12 0 chr9 40493179 40493264 -77369363 + MLT1D LTR MaLR 371 456 -49 3581 147 7 17 chr9 40493271 40493490 -77369137 + MER50 LTR ERV1 1 221 -513 2017 122 3 13 chr9 40493490 40493793 -77368834 + AluSx SINE Alu 1 300 -12 3581 147 7 17 chr9 40493793 40494152 -77368475 + MER50 LTR ERV1 221 573 -161 745 137 7 50 chr9 40494153 40494292 -77368335 - FLAM_C SINE Alu -9 134 2 819 164 13 13 chr9 40494293 40494445 -77368182 + MER50 LTR ERV1 560 711 -23 246 324 37 9 chr9 40494594 40494702 -77367925 - MIR SINE MIR -87 175 65 656 232 105 11 chr9 40494748 40494929 -77367698 + MIR3 SINE MIR 5 202 -6 1054 167 8 91 chr9 40495159 40495411 -77367216 - AluJo SINE Alu -19 293 63 743 207 157 80 chr9 40496025 40496324 -77366303 + MER115 DNA AcHobo 112 433 -260 200 261 57 34 chr9 40496459 40496547 -77366080 - L2 LINE L2 -213 3059 2970 1999 112 20 0 chr9 40497080 40497375 -77365252 + AluSx SINE Alu 1 301 -11 629 302 107 47 chr9 40497550 40497980 -77364647 - MLT1K LTR MaLR -8 580 125 292 331 39 65 chr9 40499429 40499583 -77363044 - MIR3 SINE MIR -1 207 58 262 0 53 0 chr9 40500457 40500495 -77362132 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 413 313 108 38 chr9 40500910 40501150 -77361477 + L3 LINE CR1 1306 1562 -15 368 177 0 0 chr9 40501561 40501623 -77361004 + MIR SINE MIR 89 150 -112 292 299 11 11 chr9 40501696 40501783 -77360844 + MER117 DNA MER1_type 111 197 0 300 53 0 0 chr9 40501958 40501996 -77360631 + (TTCC)n Simple_repeat Simple_repeat 4 41 0 2039 141 0 0 chr9 40502015 40502327 -77360300 - AluSx SINE Alu 0 312 1 344 353 72 14 chr9 40502692 40502913 -77359714 + L2 LINE L2 2817 3050 -222 1674 151 52 119 chr9 40503307 40503770 -77358857 - MSTB1 LTR MaLR 0 432 1 2169 129 45 3 chr9 40504003 40504337 -77358290 + MER7A DNA MER2_type 1 346 0 428 198 96 108 chr9 40504482 40504639 -77357988 + MIR SINE MIR 78 232 -30 2265 87 3 0 chr9 40504733 40505031 -77357596 - AluSp SINE Alu -14 299 1 999 98 0 0 chr9 40505033 40505165 -77357462 - AluSp SINE Alu -181 132 1 1637 176 6 29 chr9 40505165 40505478 -77357149 - AluJb SINE Alu -6 306 1 2071 221 65 25 chr9 40505496 40506022 -77356605 - MLT1H LTR MaLR -2 547 1 1020 275 64 38 chr9 40506709 40507054 -77355573 + MLT1H LTR MaLR 1 354 -195 322 167 167 24 chr9 40507037 40507121 -77355506 + MLT1I LTR MaLR 281 376 -33 * 446 301 41 53 chr9 40507208 40507435 -77355192 + L2 LINE L2 2800 3023 -249 225 188 0 0 chr9 40507505 40507553 -77355074 + (TA)n Simple_repeat Simple_repeat 2 49 0 2381 136 20 83 chr9 40507612 40507684 -77354943 - MSTA LTR MaLR 0 428 353 1792 109 8 4 chr9 40507684 40507940 -77354687 + AluSq SINE Alu 1 257 -56 2381 136 20 83 chr9 40507940 40508324 -77354303 - MSTA LTR MaLR -75 353 1 222 224 224 0 chr9 40508382 40508440 -77354187 + L2 LINE L2 3201 3271 -1 195 42 0 0 chr9 40508644 40508668 -77353959 + (A)n Simple_repeat Simple_repeat 1 24 0 364 318 24 65 chr9 40509338 40509508 -77353119 + L2 LINE L2 3109 3271 -1 255 266 55 9 chr9 40509522 40509631 -77352996 - L1ME4a LINE L1 -67 6054 5941 2235 82 3 13 chr9 40509650 40509956 -77352671 - AluY SINE Alu -8 303 1 482 283 115 45 chr9 40509976 40510262 -77352365 - L1ME4a LINE L1 -263 5858 5553 209 273 20 61 chr9 40510389 40510488 -77352139 + MIR SINE MIR 108 202 -60 195 269 108 21 chr9 40510855 40510948 -77351679 + MIR3 SINE MIR 87 187 -21 369 275 33 50 chr9 40511276 40511396 -77351231 + MIR SINE MIR 145 262 0 221 301 107 10 chr9 40511721 40511824 -77350803 + L2 LINE L2 3140 3252 -20 521 340 0 6 chr9 40511824 40511983 -77350644 - L2 LINE L2 0 3313 3156 284 315 161 0 chr9 40512439 40512588 -77350039 - L2 LINE L2 -469 2845 2673 219 280 0 0 chr9 40512868 40512918 -77349709 + G-rich Low_complexity Low_complexity 3 52 0 204 163 23 0 chr9 40513257 40513300 -77349327 + (TAA)n Simple_repeat Simple_repeat 2 45 0 537 231 124 24 chr9 40513402 40513571 -77349056 + L2 LINE L2 3128 3313 0 359 275 34 54 chr9 40513570 40513719 -77348908 - L3 LINE CR1 -115 1462 1317 * 223 274 306 8 chr9 40513823 40513947 -77348680 - L3 LINE CR1 -429 1148 988 1213 225 60 67 chr9 40514179 40514747 -77347880 + L1MEc LINE L1 2080 2604 -3611 1906 144 3 3 chr9 40514747 40515045 -77347582 - AluJo SINE Alu -6 306 9 1213 225 60 67 chr9 40515045 40515137 -77347490 + L1MEc LINE L1 2604 2695 -3520 2167 110 7 0 chr9 40515332 40515641 -77346986 + AluSx SINE Alu 1 311 -1 1098 276 43 18 chr9 40515686 40516137 -77346490 + L1MDa LINE L1 1809 2311 -4410 9049 129 22 19 chr9 40516152 40517165 -77345462 - L1MA3 LINE L1 0 6305 5296 2085 106 0 3 chr9 40517165 40517491 -77345136 - AluSq SINE Alu 0 325 1 9049 129 22 19 chr9 40517491 40518748 -77343879 - L1MA3 LINE L1 -1009 5296 4012 2125 119 0 0 chr9 40518748 40519042 -77343585 - AluSx SINE Alu -18 294 1 9049 129 22 19 chr9 40519042 40519271 -77343356 - L1MA3 LINE L1 -2293 4012 3785 226 188 20 0 chr9 40520188 40520289 -77342338 + (TA)n Simple_repeat Simple_repeat 1 103 0 1936 116 7 10 chr9 40520293 40520586 -77342041 - AluSx SINE Alu -20 292 1 1301 260 85 16 chr9 40520647 40521070 -77341557 + LTR16B LTR ERVL 1 452 -12 3251 299 55 35 chr9 40521086 40522478 -77340149 + HERV16 LTR ERVL 12 1431 -3565 1768 191 31 28 chr9 40522570 40522927 -77339700 + MLT1A2 LTR MaLR 1 358 -16 1200 201 18 0 chr9 40522928 40523152 -77339475 + MLT2B3 LTR ERVL 5 232 -322 873 206 50 40 chr9 40523170 40523369 -77339258 - MLT1A2 LTR MaLR -85 289 89 1581 172 10 17 chr9 40523373 40523664 -77338963 + MLT2B3 LTR ERVL 251 539 -15 801 310 41 21 chr9 40523705 40523995 -77338632 + HERV16 LTR ERVL 1614 1909 -3087 1417 196 57 0 chr9 40524007 40524272 -77338355 - MER58 DNA MER1_type -59 282 3 276 280 0 13 chr9 40524956 40525031 -77337596 - Charlie8 DNA MER1_type -3 2414 2341 2115 127 0 0 chr9 40525084 40525391 -77337236 - AluSx SINE Alu -5 307 1 267 286 0 0 chr9 40525439 40525495 -77337132 - Charlie8 DNA MER1_type -2360 57 2 463 264 17 46 chr9 40525565 40525739 -77336888 - MIR3 SINE MIR -37 171 3 471 293 111 50 chr9 40526531 40526811 -77335816 + L3 LINE CR1 1257 1553 -24 215 319 159 0 chr9 40527769 40527838 -77334789 + L2 LINE L2 3111 3190 -82 469 215 131 12 chr9 40527996 40528277 -77334350 + LTR16A1 LTR ERVL 145 437 -20 197 267 67 0 chr9 40528332 40528392 -77334235 - MIR3 SINE MIR -28 180 117 2763 129 54 0 chr9 40528412 40528855 -77333772 - MER41E LTR ERV1 -45 467 1 441 0 0 0 chr9 40528892 40528941 -77333686 + (TG)n Simple_repeat Simple_repeat 1 49 0 204 326 43 0 chr9 40529954 40530046 -77332581 + MIR SINE MIR 30 125 -83 201 333 81 0 chr9 40530082 40530169 -77332458 - L2 LINE L2 -39 3233 3140 907 188 21 5 chr9 40530404 40530590 -77332037 + MER5A DNA MER1_type 1 189 0 223 261 46 59 chr9 40531348 40531501 -77331126 - L2 LINE L2 -292 2980 2830 393 266 39 16 chr9 40532075 40532203 -77330424 + MIR3 SINE MIR 30 160 -48 916 227 22 4 chr9 40534295 40534524 -77328103 + L2 LINE L2 2831 3063 -250 1020 155 0 30 chr9 40534550 40534750 -77327877 - AluJb SINE Alu 0 312 119 467 291 133 0 chr9 40534754 40534919 -77327708 + L2 LINE L2 3127 3313 0 1215 83 171 10 chr9 40534937 40535038 -77327589 + MER30 DNA MER1_type 2 85 -145 197 33 33 0 chr9 40535038 40535068 -77327559 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1215 83 171 10 chr9 40535068 40535159 -77327468 + MER30 DNA MER1_type 85 225 -5 495 248 25 0 chr9 40535491 40535612 -77327015 + MIR SINE MIR 88 211 -51 2372 246 10 12 chr9 40535724 40536240 -77326387 - LTR40a LTR ERVL -2 517 3 357 274 205 42 chr9 40536734 40536993 -77325634 - L2 LINE L2 -4 3268 2968 465 229 52 7 chr9 40537139 40537292 -77325335 - L1ME4a LINE L1 0 6121 5962 180 262 0 24 chr9 40538560 40538602 -77324025 + L3b LINE CR1 1522 1562 -21 453 330 178 23 chr9 40539120 40539681 -77322946 + L2 LINE L2 2395 3042 -230 2594 171 39 8 chr9 40539728 40540218 -77322409 + MLT1D LTR MaLR 1 505 0 1961 112 7 0 chr9 40540545 40540848 -77321779 + AluSx SINE Alu 2 306 0 260 264 127 18 chr9 40540940 40541050 -77321577 - MIR3 SINE MIR -3 205 84 604 245 88 19 chr9 40541094 40541253 -77321374 - MIR SINE MIR -91 171 2 454 348 0 11 chr9 40542100 40542367 -77320260 + (CA)n Simple_repeat Simple_repeat 1 264 0 429 246 102 55 chr9 40542887 40543051 -77319576 - MIR SINE MIR -54 208 38 215 183 48 39 chr9 40544390 40544494 -77318133 + (TCTA)n Simple_repeat Simple_repeat 3 107 0 312 268 123 72 chr9 40544495 40544771 -77317856 - L1MEd LINE L1 -4875 1244 955 209 290 32 43 chr9 40544822 40544915 -77317712 + L2 LINE L2 2261 2352 -962 294 260 103 59 chr9 40544973 40545155 -77317472 - MLT1J LTR MaLR -196 315 159 229 360 10 20 chr9 40546385 40546485 -77316142 + MIR SINE MIR 19 117 -91 622 220 74 184 chr9 40546636 40547082 -77315545 - L2 LINE L2 -2 3270 2874 348 233 187 15 chr9 40547971 40548106 -77314521 - MIR3 SINE MIR -19 189 35 1824 254 97 23 chr9 40548319 40548938 -77313689 + L1MEc LINE L1 498 1162 -5234 1410 236 163 2 chr9 40548931 40549367 -77313260 + L1ME1 LINE L1 5598 6103 -63 * 1408 162 41 68 chr9 40549383 40549722 -77312905 + L1MD2 LINE L1 6011 6340 -19 245 252 301 31 chr9 40550286 40550512 -77312115 + LTR67 LTR ERVL 2 288 -269 2778 245 105 27 chr9 40550680 40551454 -77311173 - L2 LINE L2 -123 3190 2477 1315 209 84 50 chr9 40551454 40551813 -77310814 + MLT1A2 LTR MaLR 1 371 -3 2778 245 105 27 chr9 40551813 40552028 -77310599 - L2 LINE L2 -836 2477 2280 14430 144 16 42 chr9 40552028 40552380 -77310247 - Tigger1 DNA MER2_type 0 2418 2059 1464 114 0 0 chr9 40552380 40552581 -77310046 + AluSx SINE Alu 1 201 -111 14430 144 16 42 chr9 40552581 40552693 -77309934 - Tigger1 DNA MER2_type -359 2059 1946 2181 92 0 0 chr9 40552693 40553010 -77309617 - AluSx SINE Alu 0 317 1 14430 144 16 42 chr9 40553010 40553434 -77309193 - Tigger1 DNA MER2_type -472 1946 1513 2214 83 0 40 chr9 40553434 40553758 -77308869 - AluY SINE Alu 0 311 1 14430 144 16 42 chr9 40553758 40555346 -77307281 - Tigger1 DNA MER2_type -905 1513 1 2778 245 105 27 chr9 40555346 40555529 -77307098 - L2 LINE L2 -1033 2280 1924 1040 128 26 6 chr9 40555564 40555720 -77306907 + MER70B LTR ERVL 1 159 -419 * 2533 199 36 2 chr9 40555719 40556191 -77306436 + MER70B LTR ERVL 90 577 -1 950 212 121 103 chr9 40556822 40557173 -77305454 + MLT2D LTR ERVL 2 362 -52 596 31 31 10 chr9 40557173 40557269 -77305358 + (TAGA)n Simple_repeat Simple_repeat 1 98 0 950 212 121 103 chr9 40557269 40557323 -77305304 + MLT2D LTR ERVL 362 414 0 234 351 27 9 chr9 40557430 40557541 -77305086 + MIR3 SINE MIR 93 205 -3 241 270 38 82 chr9 40557651 40557810 -77304817 - L2 LINE L2 -271 3001 2850 509 298 86 0 chr9 40557858 40558009 -77304618 - MIR SINE MIR -79 183 20 1565 155 7 15 chr9 40559386 40559657 -77302970 - MER2 DNA MER2_type -76 269 1 411 148 111 12 chr9 40559781 40559816 -77302811 - MLT2C2 LTR ERVL 0 464 434 375 23 0 0 chr9 40559816 40559860 -77302767 + (TG)n Simple_repeat Simple_repeat 2 45 0 411 148 111 12 chr9 40559860 40559905 -77302722 - MLT2C2 LTR ERVL -30 434 376 1837 130 0 40 chr9 40561735 40562057 -77300570 + AluSx SINE Alu 1 309 -3 3334 53 0 5 chr9 40562707 40563119 -77299508 - L1PA8 LINE L1 0 6172 5763 475 65 0 0 chr9 40563119 40563181 -77299446 + L1P3 LINE L1 5656 5717 -455 335 253 99 0 chr9 40563212 40563303 -77299324 - MIR3 SINE MIR -12 196 97 201 286 71 0 chr9 40563400 40563456 -77299171 - MIR SINE MIR -55 153 94 270 221 0 52 chr9 40563510 40563664 -77298963 + CT-rich Low_complexity Low_complexity 3 148 0 797 164 0 0 chr9 40564897 40565019 -77297608 + AluSq/x SINE Alu 2 123 -189 336 249 41 29 chr9 40565651 40565791 -77296836 + MIR SINE MIR 50 149 -59 964 217 95 43 chr9 40566052 40566175 -77296452 + LTR37A LTR ERV1 41 156 -270 2153 97 0 7 chr9 40566175 40566475 -77296152 + AluSg SINE Alu 1 298 -12 964 217 95 43 chr9 40566475 40566678 -77295949 + LTR37A LTR ERV1 156 384 -42 1055 213 42 34 chr9 40566681 40566944 -77295683 - MLT1E3 LTR MaLR 0 624 360 190 333 17 0 chr9 40566963 40567023 -77295604 + L2 LINE L2 2991 3051 -221 511 262 78 21 chr9 40567029 40567170 -77295457 + MIR SINE MIR 2 150 -112 485 276 32 32 chr9 40567227 40567383 -77295244 - MIR SINE MIR -3 259 104 22 35 0 0 chr9 40567718 40567747 -77294880 + AT_rich Low_complexity Low_complexity 1 29 0 530 281 92 57 chr9 40568953 40569232 -77293395 + L1ME4a LINE L1 5125 5393 -728 1864 114 64 10 chr9 40569232 40569529 -77293098 + AluSq SINE Alu 1 313 0 530 281 92 57 chr9 40569529 40570129 -77292498 + L1ME4a LINE L1 5393 6026 -95 204 343 15 0 chr9 40570612 40570679 -77291948 + L2 LINE L2 2875 2942 -330 403 329 50 0 chr9 40570689 40570829 -77291798 - L1MEc LINE L1 -3709 2420 2274 322 347 111 27 chr9 40570986 40571248 -77291379 - L1MEc LINE L1 -4092 2218 1935 3387 59 32 0 chr9 40571366 40571804 -77290823 - L1PA8 LINE L1 -1 6171 5720 349 280 89 54 chr9 40571864 40572032 -77290595 - L1MEc LINE L1 -4579 1731 1558 1881 220 64 18 chr9 40572115 40572889 -77289738 + L1MA8 LINE L1 2926 7008 -702 6242 67 23 52 chr9 40572898 40574883 -77287744 + SVA Other Other 1 1386 0 3837 140 51 13 chr9 40574894 40575578 -77287049 + L1MA8 LINE L1 6991 7700 -10 824 163 0 15 chr9 40575683 40575818 -77286809 - FLAM_C SINE Alu 0 133 1 271 294 105 0 chr9 40575853 40575996 -77286631 - L1MEc LINE L1 -4935 1375 1218 999 228 55 94 chr9 40576003 40576398 -77286229 - L1MEc LINE L1 -4902 1217 851 1863 147 13 10 chr9 40576398 40576705 -77285922 - AluSx SINE Alu -4 308 1 999 228 55 94 chr9 40576705 40576892 -77285735 - L1MEc LINE L1 -5268 851 658 311 335 50 101 chr9 40577768 40578247 -77284380 + HAL1 LINE L1 814 1265 -1242 744 228 127 101 chr9 40578247 40578782 -77283845 + MLT1H LTR MaLR 1 549 0 311 335 50 101 chr9 40578782 40578827 -77283800 + HAL1 LINE L1 1265 1311 -1196 2668 182 15 35 chr9 40579792 40580394 -77282233 - MER68 LTR ERV1 0 605 1 247 261 29 127 chr9 40580394 40580575 -77282052 + HAL1b LINE L1 450 647 -701 2056 207 17 54 chr9 40580575 40581093 -77281534 - MLT1D LTR MaLR -2 503 5 2513 109 114 5 chr9 40581098 40581484 -77281143 - MSTA LTR MaLR 0 428 1 247 261 29 127 chr9 40581484 40581541 -77281086 + HAL1b LINE L1 651 670 -678 192 319 75 21 chr9 40582983 40583077 -77279550 + MIR SINE MIR 107 205 -57 622 270 47 82 chr9 40583245 40583564 -77279063 - MLT1K LTR MaLR -6 582 275 1658 229 78 37 chr9 40583657 40584146 -77278481 + MLT1J LTR MaLR 1 509 -2 502 199 66 22 chr9 40584480 40584616 -77278011 - MER103 DNA DNA -22 144 3 239 270 95 36 chr9 40585557 40585694 -77276933 + MIR3 SINE MIR 18 162 -46 465 187 99 0 chr9 40586929 40587020 -77275607 - MER103 DNA DNA -63 103 4 246 291 13 0 chr9 40587368 40587447 -77275180 + Charlie8 DNA MER1_type 11 90 -2327 652 255 130 0 chr9 40587802 40587963 -77274664 - MER5A DNA MER1_type 0 189 8 211 269 27 74 chr9 40587974 40588123 -77274504 - MIR SINE MIR -42 220 79 289 280 34 42 chr9 40588943 40589061 -77273566 - MIR SINE MIR -87 175 59 2384 101 49 3 chr9 40589252 40589599 -77273028 + THE1B LTR MaLR 2 364 0 2174 147 99 20 chr9 40589844 40590239 -77272388 - MSTB LTR MaLR 0 426 1 394 232 155 28 chr9 40590318 40590460 -77272167 - MIR SINE MIR -81 127 9 1859 193 28 100 chr9 40590551 40591090 -77271537 - MLT1D LTR MaLR -5 500 1 543 308 140 4 chr9 40591489 40591753 -77270874 + L2 LINE L2 2760 3055 -258 191 185 0 74 chr9 40592064 40592118 -77270509 + MIR SINE MIR 71 120 -88 493 268 179 0 chr9 40592797 40592965 -77269662 - MIR SINE MIR -14 248 51 206 272 74 37 chr9 40593081 40593162 -77269465 - MIR SINE MIR -88 174 91 1365 214 71 117 chr9 40593171 40593793 -77268834 - MLT1E LTR MaLR 0 593 1 498 267 114 62 chr9 40595069 40595662 -77266965 + L2 LINE L2 2450 3098 -174 447 262 89 62 chr9 40596506 40596651 -77265976 + MIR SINE MIR 18 174 -88 1558 174 7 21 chr9 40596651 40596967 -77265660 + AluJo SINE Alu 1 312 0 447 262 89 62 chr9 40596967 40597045 -77265582 + MIR SINE MIR 174 248 -14 199 272 163 55 chr9 40597135 40597337 -77265290 + L2 LINE L2 2054 2277 -1037 641 182 84 0 chr9 40597357 40597500 -77265127 + L1MD2 LINE L1 5884 6038 -321 5911 158 13 12 chr9 40597521 40597905 -77264722 - L1PB1 LINE L1 -1 6150 5768 333 0 0 0 chr9 40597905 40597942 -77264685 + (TG)n Simple_repeat Simple_repeat 2 38 0 5911 158 13 12 chr9 40597942 40599424 -77263203 - L1PB1 LINE L1 -383 5768 4280 2217 175 76 37 chr9 40599437 40599923 -77262704 - MLT1D LTR MaLR 0 505 1 1527 177 15 36 chr9 40599923 40600257 -77262370 + L1MD2 LINE L1 6032 6358 -1 749 101 39 62 chr9 40600264 40600289 -77262338 + FLAM_C SINE Alu 2 26 -286 2864 84 0 16 chr9 40600289 40600668 -77261959 + THE1C LTR MaLR 3 375 0 749 101 39 62 chr9 40600668 40600771 -77261856 + FLAM_C SINE Alu 26 127 -185 324 285 115 0 chr9 40602061 40602191 -77260436 + MIR SINE MIR 80 224 -38 429 291 103 96 chr9 40602404 40602802 -77259825 + L1ME LINE L1 5297 5697 -424 180 0 0 0 chr9 40603143 40603163 -77259464 + (CAG)n Simple_repeat Simple_repeat 2 21 0 366 309 86 6 chr9 40603169 40603331 -77259296 + L3 LINE CR1 1297 1471 -106 1961 167 22 50 chr9 40603424 40603764 -77258863 - MSTA LTR MaLR 0 428 153 423 0 0 0 chr9 40603764 40603811 -77258816 + (CTG)n Simple_repeat Simple_repeat 2 48 0 1961 167 22 50 chr9 40603811 40603960 -77258667 - MSTA LTR MaLR -275 153 1 384 188 0 27 chr9 40604015 40604127 -77258500 + GA-rich Low_complexity Low_complexity 3 111 0 229 291 0 0 chr9 40605251 40605306 -77257321 - MIR SINE MIR -56 206 152 294 192 0 90 chr9 40605437 40605515 -77257112 - MIR SINE MIR -108 154 84 189 0 0 0 chr9 40605986 40606007 -77256620 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 1643 166 58 4 chr9 40607269 40607546 -77255081 + AluJo SINE Alu 1 292 -20 1311 184 129 12 chr9 40608313 40608568 -77254059 - AluJo SINE Alu -16 296 12 520 298 62 11 chr9 40608928 40609106 -77253521 + MIR3 SINE MIR 19 205 -3 496 257 57 7 chr9 40609521 40609661 -77252966 - MIR SINE MIR -79 183 37 184 300 0 71 chr9 40609756 40609826 -77252801 + L2 LINE L2 3207 3271 -1 314 286 130 7 chr9 40610322 40610476 -77252151 - MIR3 SINE MIR -9 199 27 378 61 0 0 chr9 40611365 40611414 -77251213 + (TG)n Simple_repeat Simple_repeat 2 50 0 2082 136 24 0 chr9 40611569 40611908 -77250719 + MER7A DNA MER2_type 2 346 0 1450 180 243 17 chr9 40612585 40612997 -77249630 - MLT1D LTR MaLR 0 505 1 264 320 16 48 chr9 40613152 40613259 -77249368 - MIR SINE MIR -130 132 28 1979 163 59 10 chr9 40613259 40613414 -77249213 + MSTB LTR MaLR 1 147 -279 2308 103 3 0 chr9 40613414 40613714 -77248913 - AluSx SINE Alu -11 301 1 1979 163 59 10 chr9 40613714 40613964 -77248663 + MSTB LTR MaLR 147 426 0 264 320 16 48 chr9 40613964 40613981 -77248646 - MIR SINE MIR -234 28 12 195 216 0 0 chr9 40614003 40614040 -77248587 - MIR SINE MIR -115 147 111 862 240 93 5 chr9 40614162 40614453 -77248174 - L1ME1 LINE L1 0 6184 5859 1171 213 223 16 chr9 40614481 40614857 -77247770 - L1ME1 LINE L1 -4 6162 5709 * 1712 219 11 20 chr9 40614848 40615286 -77247341 - L1ME1 LINE L1 -2354 3792 3359 303 224 233 0 chr9 40615446 40615562 -77247065 + L1ME LINE L1 5683 5825 -296 646 179 57 7 chr9 40615666 40615806 -77246821 - MER45R DNA AcHobo -236 1345 1199 910 210 127 99 chr9 40615952 40616246 -77246381 - MER45R DNA AcHobo -1182 399 90 2282 121 0 0 chr9 40616246 40616543 -77246084 - AluSx SINE Alu -15 297 1 910 210 127 99 chr9 40616543 40616633 -77245994 - MER45R DNA AcHobo -1491 90 4 319 284 10 20 chr9 40616835 40616937 -77245690 + L2 LINE L2 3205 3305 -8 2866 201 19 13 chr9 40617347 40617965 -77244662 - L1MD3 LINE L1 0 7995 7374 469 338 7 0 chr9 40618361 40618500 -77244127 - MIR3 SINE MIR -34 174 35 429 257 9 9 chr9 40618931 40619044 -77243583 + L2 LINE L2 3160 3272 0 573 283 43 5 chr9 40619548 40619732 -77242895 - MIR SINE MIR -45 217 27 190 196 20 0 chr9 40620059 40620110 -77242517 - MIR SINE MIR -64 144 93 575 132 0 66 chr9 40620171 40620292 -77242335 + FLAM_A SINE Alu 29 141 -1 216 296 283 0 chr9 40620594 40620753 -77241874 + MIR SINE MIR 44 247 -15 296 270 20 20 chr9 40620883 40620983 -77241644 + MIR SINE MIR 24 123 -85 690 217 48 53 chr9 40621013 40621202 -77241425 - MIR SINE MIR -46 216 29 251 343 76 17 chr9 40621478 40621650 -77240977 + MIR3 SINE MIR 18 199 -9 1205 242 33 3 chr9 40622152 40622458 -77240169 + L1ME LINE L1 5508 5822 -348 262 246 18 0 chr9 40622584 40622641 -77239986 - Tigger7 DNA MER2_type -2247 240 183 1011 136 63 29 chr9 40622652 40622858 -77239769 - L1MA9 LINE L1 -209 6103 5891 1632 185 60 3 chr9 40622889 40623187 -77239440 + MER44D DNA MER2_type 1 315 -390 653 156 0 0 chr9 40623250 40623359 -77239268 - L1MA9 LINE L1 -422 5890 5782 1306 105 4 31 chr9 40623596 40623824 -77238803 - Tigger7 DNA MER2_type -26 2465 2244 451 333 7 0 chr9 40623856 40624003 -77238624 - L3 LINE CR1 -75 1502 1355 181 318 0 30 chr9 40624006 40624072 -77238555 - L3 LINE CR1 -1 1576 1513 207 293 26 78 chr9 40624203 40624319 -77238308 - MIR3 SINE MIR -14 194 85 383 348 39 21 chr9 40624788 40625021 -77237606 - MIR SINE MIR -6 256 20 249 33 0 0 chr9 40625134 40625164 -77237463 + (TC)n Simple_repeat Simple_repeat 2 31 0 756 184 14 104 chr9 40625171 40625383 -77237244 + MLT1A2 LTR MaLR 181 373 -1 1172 205 172 17 chr9 40625929 40626290 -77236337 - MLT1F LTR MaLR 0 542 126 6602 120 224 25 chr9 40626291 40627704 -77234923 + pTR5 LTR ERV1 743 2436 -2 586 162 7 78 chr9 40627705 40627847 -77234780 - MLT1F LTR MaLR -410 132 1 308 226 0 98 chr9 40627964 40628066 -77234561 - MLT1A2 LTR MaLR -110 264 173 775 254 46 42 chr9 40628097 40628337 -77234290 + MLT1D LTR MaLR 207 447 -58 2135 125 0 3 chr9 40628360 40628656 -77233971 - AluSx SINE Alu -12 300 6 234 210 48 0 chr9 40628665 40628727 -77233900 + MLT1D LTR MaLR 561 625 -1 259 268 99 0 chr9 40628909 40628980 -77233647 + MIR SINE MIR 34 111 -151 394 271 59 25 chr9 40628984 40629102 -77233525 - MER5B DNA MER1_type -7 171 50 213 329 24 35 chr9 40629123 40629208 -77233419 + MER5B DNA MER1_type 93 176 -2 266 308 56 9 chr9 40629212 40629319 -77233308 + MIR SINE MIR 107 218 -44 240 204 41 0 chr9 40629957 40630006 -77232621 - MER69 DNA AcHobo -3 2523 2473 403 270 46 20 chr9 40631593 40631745 -77230882 + MIR3 SINE MIR 50 205 -3 2020 120 49 0 chr9 40631797 40632081 -77230546 + AluSx SINE Alu 1 298 -14 1767 108 0 0 chr9 40632583 40632806 -77229821 + AluSx SINE Alu 1 223 -89 213 312 181 14 chr9 40632912 40633050 -77229577 + MIR SINE MIR 9 169 -93 694 288 68 51 chr9 40633140 40633553 -77229074 + MLT1J LTR MaLR 86 505 -6 2757 213 11 37 chr9 40633624 40634273 -77228354 + LTR27 LTR ERV1 1 634 -2 467 265 86 110 chr9 40634423 40634797 -77227830 + L2 LINE L2 2888 3252 -20 329 221 145 15 chr9 40635323 40635454 -77227173 - MIR3 SINE MIR -60 148 1 188 286 12 119 chr9 40635781 40635865 -77226762 + L2 LINE L2 2676 2750 -564 452 188 32 38 chr9 40635873 40636010 -77226617 + MLT1J LTR MaLR 292 476 -21 245 286 62 107 chr9 40636010 40636188 -77226439 - MER5B DNA MER1_type -8 170 1 757 167 0 8 chr9 40636330 40636456 -77226171 + FLAM_C SINE Alu 1 125 -8 1056 195 91 4 chr9 40636478 40636840 -77225787 - MLT1D LTR MaLR -83 422 1 666 301 21 46 chr9 40636872 40637154 -77225473 - Charlie8 DNA MER1_type -2141 276 2 254 308 88 38 chr9 40637634 40637793 -77224834 - LTR33A LTR ERVL -2 521 355 323 231 8 103 chr9 40637933 40638050 -77224577 + MIR SINE MIR 41 146 -62 2010 132 4 0 chr9 40638974 40639284 -77223343 + AluSx SINE Alu 1 311 0 218 54 0 27 chr9 40639378 40639415 -77223212 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 210 261 0 0 chr9 40639416 40639462 -77223165 - MER5B DNA MER1_type -131 47 2 488 272 193 17 chr9 40639490 40639791 -77222836 - L3 LINE CR1 -93 1484 1131 260 246 18 0 chr9 40640584 40640641 -77221986 - LTR67 LTR ERVL -386 171 114 25 0 0 0 chr9 40640911 40640936 -77221691 + AT_rich Low_complexity Low_complexity 1 25 0 200 256 70 12 chr9 40642161 40642247 -77220380 + MIR SINE MIR 63 153 -109 3805 56 24 0 chr9 40642647 40643148 -77219479 + LTR10D LTR ERV1 1 513 0 1613 171 27 20 chr9 40643186 40643478 -77219149 - AluJo SINE Alu -14 298 5 250 203 29 58 chr9 40643958 40644027 -77218600 - MIR3 SINE MIR -41 167 101 811 253 67 29 chr9 40644137 40644453 -77218174 - L2 LINE L2 -6 3307 2980 198 311 0 0 chr9 40644462 40644523 -77218104 + MIR3 SINE MIR 142 202 -6 1676 179 97 30 chr9 40646797 40647199 -77215428 + L1MB7 LINE L1 5734 6162 -22 2499 99 0 0 chr9 40647199 40647511 -77215116 - AluSx SINE Alu 0 312 1 239 333 48 0 chr9 40647595 40647679 -77214948 - L3 LINE CR1 -7 1570 1483 1458 130 0 52 chr9 40648081 40648311 -77214316 - AluJb SINE Alu -94 218 1 229 272 25 49 chr9 40648694 40648775 -77213852 + L3 LINE CR1 1492 1570 -7 282 116 0 0 chr9 40648852 40648895 -77213732 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 1787 178 4 0 chr9 40648895 40649176 -77213451 - AluJb SINE Alu -30 282 1 238 272 76 82 chr9 40649315 40649473 -77213154 - MIR SINE MIR -5 257 101 197 246 92 0 chr9 40649831 40649896 -77212731 - L2 LINE L2 -63 3209 3139 1196 122 116 0 chr9 40650005 40650186 -77212441 - AluSg/x SINE Alu -9 303 102 1894 164 0 16 chr9 40650587 40650897 -77211730 - AluJo SINE Alu -7 305 1 551 294 65 54 chr9 40651254 40651530 -77211097 - L2 LINE L2 0 3313 3035 * 669 201 81 62 chr9 40651529 40651802 -77210825 - L2 LINE L2 -384 2930 2653 299 275 106 18 chr9 40651836 40652054 -77210573 - L2 LINE L2 -1230 2084 1848 530 317 24 6 chr9 40652268 40652435 -77210192 - MLT1J2 LTR MaLR -14 436 267 2460 76 3 7 chr9 40652453 40652757 -77209870 - AluSq SINE Alu -10 303 1 251 297 120 88 chr9 40652918 40653110 -77209517 - MLT1I LTR MaLR -147 262 65 209 237 189 68 chr9 40654745 40654935 -77207692 + L2 LINE L2 2847 3059 -213 528 272 20 20 chr9 40656182 40656329 -77206298 - MIR3 SINE MIR -46 162 16 304 244 140 46 chr9 40656544 40656762 -77205865 + MIR3 SINE MIR 2 242 -20 1879 141 0 56 chr9 40657028 40657348 -77205279 + AluJo SINE Alu 1 302 -10 462 212 27 62 chr9 40657586 40657732 -77204895 - MIR3 SINE MIR -9 199 59 445 335 97 11 chr9 40658259 40658435 -77204192 + L3 LINE CR1 1298 1488 -89 196 277 36 36 chr9 40658862 40658945 -77203682 + L2 LINE L2 3229 3311 -2 2557 63 0 3 chr9 40659097 40659397 -77203230 + AluY SINE Alu 1 299 -12 427 264 54 24 chr9 40659486 40659653 -77202974 + MLT1I LTR MaLR 225 396 -13 340 311 8 25 chr9 40661194 40661313 -77201314 - MIR3 SINE MIR 0 208 92 1562 190 65 49 chr9 40661462 40661952 -77200675 - MLT1D LTR MaLR 0 505 8 279 0 0 0 chr9 40662930 40662961 -77199666 + (CA)n Simple_repeat Simple_repeat 1 31 0 321 251 106 65 chr9 40663233 40663432 -77199195 - MIR3 SINE MIR 0 208 2 652 277 57 0 chr9 40664529 40664706 -77197921 - L3 LINE CR1 -93 1484 1298 189 0 0 0 chr9 40665391 40665412 -77197215 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 472 214 29 71 chr9 40665415 40665555 -77197072 - L1ME1 LINE L1 -18 6148 6015 1803 160 10 33 chr9 40665573 40665879 -77196748 - AluJo SINE Alu -13 299 1 27 73 0 0 chr9 40665882 40665937 -77196690 + AT_rich Low_complexity Low_complexity 1 55 0 252 265 303 32 chr9 40665996 40666181 -77196446 - MIR SINE MIR -21 241 7 440 238 230 0 chr9 40666228 40666354 -77196273 - MIR SINE MIR -74 188 34 2511 150 113 35 chr9 40666439 40666960 -77195667 - MER68 LTR ERV1 0 562 1 207 187 11 143 chr9 40667198 40667289 -77195338 + MIR SINE MIR 112 190 -72 375 78 0 0 chr9 40668738 40668789 -77193838 + (TCC)n Simple_repeat Simple_repeat 1 51 0 1815 143 4 4 chr9 40668789 40669054 -77193573 - AluJo SINE Alu -14 298 34 2264 74 3 18 chr9 40669448 40669754 -77192873 + AluY SINE Alu 1 302 0 201 318 76 0 chr9 40669792 40669858 -77192769 + MIR SINE MIR 76 146 -116 1799 164 31 3 chr9 40669909 40670202 -77192425 + AluJo SINE Alu 3 303 -9 332 316 105 7 chr9 40671048 40671200 -77191427 + MIR3 SINE MIR 13 179 -29 367 259 146 32 chr9 40672104 40672262 -77190365 + MER69A DNA AcHobo 1 176 -1 208 299 0 35 chr9 40672416 40672503 -77190124 + CT-rich Low_complexity Low_complexity 2 85 0 288 137 0 0 chr9 40673258 40673309 -77189318 + (CAG)n Simple_repeat Simple_repeat 1 51 0 250 255 105 33 chr9 40673491 40673644 -77188983 - MIR3 SINE MIR -21 187 24 21 0 0 0 chr9 40673682 40673703 -77188924 + AT_rich Low_complexity Low_complexity 1 21 0 243 188 16 31 chr9 40673948 40674012 -77188615 - L1MC4a LINE L1 -1875 5933 5871 273 263 66 40 chr9 40674020 40674172 -77188455 + MER104 DNA Tc2 25 180 0 225 222 0 19 chr9 40674241 40674295 -77188332 - L1M3 LINE L1 -444 5736 5684 489 250 77 65 chr9 40674953 40675305 -77187322 + L1ME4a LINE L1 5597 5952 -169 24 0 0 0 chr9 40675351 40675375 -77187252 + AT_rich Low_complexity Low_complexity 1 24 0 995 154 6 44 chr9 40675385 40675567 -77187060 - AluJo SINE Alu -40 272 98 303 272 11 22 chr9 40675673 40675765 -77186862 + L3 LINE CR1 1378 1468 -109 207 333 0 0 chr9 40676818 40676881 -77185746 + L3 LINE CR1 1307 1369 -208 269 289 76 37 chr9 40676963 40677260 -77185367 + L1MEc LINE L1 73 254 -5951 657 229 64 5 chr9 40677412 40677600 -77185027 + LTR50 LTR ERVL 441 639 -156 1896 166 0 10 chr9 40677625 40677927 -77184700 - AluJb SINE Alu -13 299 1 2385 112 0 0 chr9 40677932 40678244 -77184383 - AluSx SINE Alu 0 312 1 1258 197 69 31 chr9 40678275 40678565 -77184062 + AluJo SINE Alu 1 301 -11 1863 323 39 32 chr9 40678857 40680132 -77182495 + ERVL LTR ERVL 585 1941 -3823 273 274 95 0 chr9 40680198 40680282 -77182345 + ERVL LTR ERVL 2094 2185 -3469 2947 154 99 13 chr9 40680547 40681104 -77181523 - MER6A DNA MER2_type 0 605 1 278 408 113 10 chr9 40681226 40681643 -77180984 - L2 LINE L2 -5 3267 2808 815 189 0 0 chr9 40681824 40681956 -77180671 - FRAM SINE Alu -44 132 1 345 255 28 28 chr9 40682289 40682395 -77180232 - MIR SINE MIR -84 124 19 248 200 57 57 chr9 40682669 40682739 -77179888 + L2 LINE L2 3203 3272 0 4219 96 8 94 chr9 40683035 40683761 -77178866 - MER4A LTR ERV1 0 664 1 500 293 158 23 chr9 40684060 40684319 -77178308 + L3 LINE CR1 583 876 -701 189 161 0 0 chr9 40685024 40685055 -77177572 + L2 LINE L2 3262 3292 -21 * 672 284 85 20 chr9 40685050 40685251 -77177376 - MIR SINE MIR 0 262 49 719 163 0 16 chr9 40685574 40685697 -77176930 + MLT1B LTR MaLR 1 121 -269 781 279 109 23 chr9 40685769 40686116 -77176511 - MLT1J2 LTR MaLR -12 438 62 1030 212 33 4 chr9 40686300 40686545 -77176082 - MER68 LTR ERV1 -310 252 1 207 187 11 143 chr9 40686783 40686874 -77175753 + MIR SINE MIR 112 190 -72 2179 73 4 18 chr9 40688352 40688627 -77174000 - AluY SINE Alu -40 271 1 1832 190 0 13 chr9 40689049 40689359 -77173268 - AluJb SINE Alu -4 308 3 243 0 0 0 chr9 40689371 40689398 -77173229 + (T)n Simple_repeat Simple_repeat 1 27 0 2681 147 95 2 chr9 40689761 40690257 -77172370 - MER34 LTR ERV1 0 542 1 180 327 55 27 chr9 40690464 40690574 -77172053 + L2 LINE L2 3143 3255 -17 441 176 108 10 chr9 40741103 40741205 -77121422 + MSTB LTR MaLR 261 372 -54 565 189 155 11 chr9 40741223 40741377 -77121250 - MST-int LTR MaLR -963 661 463 * 6541 214 50 25 chr9 40741372 40742956 -77119671 + MSTB-int LTR MaLR 28 1651 0 420 232 10 0 chr9 40742956 40743055 -77119572 + MSTA LTR MaLR 1 100 -328 339 203 41 106 chr9 40743077 40743200 -77119427 + MSTA LTR MaLR 57 171 -257 1027 234 53 40 chr9 40743209 40743512 -77119115 + MSTA-int LTR MaLR 1345 1651 0 430 200 11 0 chr9 40743516 40743606 -77119021 + MSTA LTR MaLR 5 95 -333 249 163 23 0 chr9 40743719 40743762 -77118865 + THE1-int LTR MaLR 924 967 -613 * 702 226 201 21 chr9 40743753 40743992 -77118635 - THE1-int LTR MaLR -392 1188 907 980 233 87 7 chr9 40743996 40744284 -77118343 + MSTA LTR MaLR 66 376 -52 478 226 161 7 chr9 40744318 40744455 -77118172 - MST-int LTR MaLR -990 661 504 * 6292 217 56 30 chr9 40744450 40746033 -77116594 + MSTA-int LTR MaLR 28 1651 0 377 258 10 0 chr9 40746035 40746132 -77116495 + MSTA LTR MaLR 3 100 -328 349 262 107 0 chr9 40746177 40746280 -77116347 + MSTA LTR MaLR 58 171 -257 1102 257 0 35 chr9 40746292 40746607 -77116020 + MSTA-int LTR MaLR 1347 1650 -1 435 198 10 0 chr9 40746608 40746704 -77115923 + MSTA LTR MaLR 1 97 -331 2215 122 0 0 chr9 40746848 40747144 -77115483 + AluSc SINE Alu 1 296 -13 539 225 23 0 chr9 40747146 40747275 -77115352 - L1MA10 LINE L1 -4 6330 6199 694 252 83 42 chr9 40747283 40747852 -77114775 + L1M4 LINE L1 3767 4311 -1835 2435 64 3 0 chr9 40747852 40748147 -77114480 + AluY SINE Alu 1 296 -15 694 252 83 42 chr9 40748147 40748280 -77114347 + L1M4 LINE L1 4311 4437 -1709 2323 81 0 0 chr9 40748280 40748590 -77114037 + AluSq SINE Alu 5 314 0 694 252 83 42 chr9 40748590 40749054 -77113573 + L1M4 LINE L1 4437 5067 -1079 1438 205 179 3 chr9 40749054 40749395 -77113232 - MER57A LTR ERV1 0 403 3 694 252 83 42 chr9 40749395 40749535 -77113092 + L1M4 LINE L1 5067 5200 -946 820 174 8 0 chr9 40749537 40749669 -77112958 + FLAM_C SINE Alu 1 133 0 195 129 0 0 chr9 40749739 40749770 -77112857 + (TA)n Simple_repeat Simple_repeat 2 32 0 207 0 0 0 chr9 40749774 40749797 -77112830 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2230 95 0 11 chr9 40749800 40750085 -77112542 - AluSp SINE Alu -31 282 1 912 185 58 0 chr9 40750153 40750342 -77112285 + Charlie1 DNA MER1_type 875 1074 -1687 359 179 0 0 chr9 40750360 40750427 -77112200 - L1MA10 LINE L1 -3 6331 6265 1638 216 54 14 chr9 40751275 40751645 -77110982 + MSTA LTR MaLR 1 385 -43 1495 121 26 0 chr9 40751656 40751888 -77110739 + MSTA-int LTR MaLR 13 250 -1401 1211 184 37 12 chr9 40751885 40752130 -77110497 + MSTA-int LTR MaLR 1401 1651 0 * 1532 213 29 35 chr9 40752130 40752505 -77110122 + MSTA LTR MaLR 1 373 -55 459 238 154 0 chr9 40752533 40752676 -77109951 - MST-int LTR MaLR -981 670 506 452 228 0 0 chr9 40752674 40752775 -77109852 + MSTA-int LTR MaLR 29 129 -1522 * 1513 193 7 27 chr9 40753268 40753569 -77109058 + AluJo SINE Alu 2 296 -16 3045 203 58 44 chr9 40753682 40754793 -77107834 + L1MA5 LINE L1 4808 5946 -354 1146 232 27 8 chr9 40754794 40755053 -77107574 + AluJo SINE Alu 1 264 -48 1256 164 57 36 chr9 40755126 40755406 -77107221 + L1MA5 LINE L1 6009 6294 -6 739 285 114 36 chr9 40755442 40755815 -77106812 + MLT1G1 LTR MaLR 45 561 -34 2695 190 42 33 chr9 40757150 40758066 -77104561 + L1MB8 LINE L1 4766 5700 -478 2291 85 0 20 chr9 40758066 40758360 -77104267 - AluSg SINE Alu -22 288 1 2695 190 42 33 chr9 40758360 40758499 -77104128 + L1MB8 LINE L1 5700 5836 -342 2110 154 63 14 chr9 40758499 40758928 -77103699 + MER61C LTR ERV1 1 434 0 1151 224 72 9 chr9 40758928 40759249 -77103378 + L1MB8 LINE L1 5833 6173 -5 745 178 19 38 chr9 40759483 40759640 -77102987 + MER4E LTR ERV1 26 179 -600 320 261 246 14 chr9 40759770 40759985 -77102642 + L1MDa LINE L1 1568 1832 -4708 338 335 50 16 chr9 40760015 40760197 -77102430 + MIR SINE MIR 40 227 -35 2287 114 0 3 chr9 40760992 40761299 -77101328 + AluSx SINE Alu 1 306 -6 23 0 0 0 chr9 40761863 40761886 -77100741 + AT_rich Low_complexity Low_complexity 1 23 0 2235 106 7 7 chr9 40762115 40762417 -77100210 + AluSx SINE Alu 1 302 -10 24 53 0 0 chr9 40762471 40762509 -77100118 + AT_rich Low_complexity Low_complexity 1 38 0 1502 201 5 94 chr9 40762815 40763188 -77099439 + MLT1A1 LTR MaLR 26 365 0 328 311 77 22 chr9 40763398 40763581 -77099046 - MIR SINE MIR -33 229 37 2465 80 0 0 chr9 40766852 40767152 -77095475 + AluY SINE Alu 11 310 -1 201 375 0 0 chr9 40767407 40767503 -77095124 + (TG)n Simple_repeat Simple_repeat 1 96 0 1280 190 4 22 chr9 40767730 40767999 -77094628 + L1M2c LINE L1 2008 2271 -4518 1667 147 82 41 chr9 40768389 40768826 -77093801 + SN5 Other centromeric 1 455 0 183 204 0 0 chr9 40769071 40769120 -77093507 + (TG)n Simple_repeat Simple_repeat 2 50 0 244 231 13 26 chr9 40769618 40769696 -77092931 + HSAT5 Satellite Satellite 9 85 -1 279 211 0 28 chr9 40769885 40769956 -77092671 + HSAT5 Satellite Satellite 17 85 -1 281 279 0 12 chr9 40769997 40770083 -77092544 + HSAT5 Satellite Satellite 1 85 -1 654 220 47 0 chr9 40770632 40770782 -77091845 + L1MC4 LINE L1 6847 7003 -1039 904 197 41 9 chr9 40770825 40771043 -77091584 + L1MC4 LINE L1 7137 7361 -681 261 335 116 61 chr9 40771688 40772188 -77090439 - L2 LINE L2 -5 3267 2745 22 35 0 0 chr9 40772562 40772591 -77090036 + AT_rich Low_complexity Low_complexity 1 29 0 2303 107 0 0 chr9 40772866 40773164 -77089463 + AluSc SINE Alu 1 298 -11 23 68 0 0 chr9 40773254 40773298 -77089329 + AT_rich Low_complexity Low_complexity 1 44 0 276 288 12 0 chr9 40773331 40773411 -77089216 - L1PA16 LINE L1 -1 6165 6085 746 251 53 21 chr9 40773522 40773765 -77088862 + L1ME2 LINE L1 5811 6061 -103 1694 235 58 41 chr9 40773851 40774491 -77088136 + L1ME3 LINE L1 5197 5845 -317 200 246 254 15 chr9 40774497 40774631 -77087996 + L2 LINE L2 2744 2909 -405 236 185 0 77 chr9 40774820 40774885 -77087742 + L2 LINE L2 3158 3217 -96 2114 106 40 7 chr9 40774889 40775190 -77087437 - AluSq SINE Alu -1 312 2 314 311 135 29 chr9 40775518 40775762 -77086865 - L2 LINE L2 -36 3277 3008 1283 238 41 54 chr9 40775972 40776434 -77086193 + L1MDb LINE L1 822 1277 -5132 370 292 138 17 chr9 40776782 40777013 -77085614 - MER102a DNA MER1_type -1 329 71 198 0 0 0 chr9 40777899 40777921 -77084706 + (T)n Simple_repeat Simple_repeat 1 22 0 698 109 0 30 chr9 40777959 40778060 -77084567 - AluY SINE Alu -184 127 30 459 132 0 0 chr9 40778060 40778128 -77084499 - FRAM/FAM SINE Alu -107 68 1 236 336 53 38 chr9 40778141 40778272 -77084355 + MER5B DNA MER1_type 46 178 0 544 286 111 43 chr9 40779901 40780139 -77082488 + MIR SINE MIR 4 254 -8 1511 203 3 10 chr9 40780141 40780436 -77082191 - AluJo SINE Alu -19 293 1 22 70 0 0 chr9 40780441 40780484 -77082143 + AT_rich Low_complexity Low_complexity 1 43 0 241 273 13 78 chr9 40780533 40780687 -77081940 + MER104 DNA Tc2 34 177 -3 2070 122 0 0 chr9 40780841 40781155 -77081472 + AluSg SINE Alu 1 310 0 1799 102 33 0 chr9 40781723 40781968 -77080659 - AluSc SINE Alu -56 253 1 1940 146 0 0 chr9 40781969 40782275 -77080352 - AluSg SINE Alu 0 306 1 551 181 319 6 chr9 40783546 40783712 -77078915 + MER20 DNA MER1_type 2 219 0 22 0 0 0 chr9 40783786 40783808 -77078819 + AT_rich Low_complexity Low_complexity 1 22 0 1119 148 0 22 chr9 40783808 40783991 -77078636 - AluJb SINE Alu -7 305 127 321 269 80 34 chr9 40784153 40784328 -77078299 - L1MC4a LINE L1 -1767 6041 5859 306 0 0 0 chr9 40784370 40784404 -77078223 + (TA)n Simple_repeat Simple_repeat 2 35 0 1919 142 0 10 chr9 40784404 40784692 -77077935 - AluSx SINE Alu -27 285 1 941 176 113 57 chr9 40785041 40785336 -77077291 + MLT1E1 LTR MaLR 258 654 0 587 197 17 0 chr9 40785870 40785987 -77076640 + L1MB4 LINE L1 6047 6165 -15 5135 215 72 43 chr9 40786179 40787572 -77075055 + HERVL68 LTR ERVL 347 1780 -1257 1573 214 69 31 chr9 40787623 40787638 -77074989 + HERVL68 LTR ERVL 1941 1954 -1083 2320 71 14 14 chr9 40787638 40787935 -77074692 - AluY SINE Alu -14 297 1 1573 214 69 31 chr9 40787935 40788339 -77074288 + HERVL68 LTR ERVL 1954 2376 -661 786 221 69 22 chr9 40788339 40788570 -77074057 - MER31B LTR ERV1 0 466 225 309 194 16 0 chr9 40790510 40790572 -77072055 + MIR SINE MIR 111 173 -89 351 206 93 0 chr9 40790950 40791047 -77071580 - MIR SINE MIR -111 151 46 364 202 144 117 chr9 40791392 40791580 -77071047 - MER31B LTR ERV1 -244 222 30 42 0 0 0 chr9 40792448 40792490 -77070137 + AT_rich Low_complexity Low_complexity 1 42 0 583 212 42 17 chr9 40792667 40792785 -77069842 + FLAM_A SINE Alu 1 121 -21 27 29 0 0 chr9 40792968 40793002 -77069625 + AT_rich Low_complexity Low_complexity 1 34 0 181 83 56 0 chr9 40793084 40793120 -77069507 + GA-rich Low_complexity Low_complexity 5 42 0 34 42 0 0 chr9 40793186 40793234 -77069393 + AT_rich Low_complexity Low_complexity 1 48 0 45 19 0 0 chr9 40793286 40793338 -77069289 + AT_rich Low_complexity Low_complexity 1 52 0 29 60 0 0 chr9 40793401 40793451 -77069176 + AT_rich Low_complexity Low_complexity 1 50 0 1241 274 89 118 chr9 40793615 40794190 -77068437 - L2 LINE L2 -342 2972 2382 1693 170 32 0 chr9 40794190 40794472 -77068155 + AluJb SINE Alu 1 291 -21 1241 274 89 118 chr9 40794472 40794642 -77067985 - L2 LINE L2 -932 2382 2209 629 211 0 9 chr9 40794642 40794751 -77067876 + FLAM_C SINE Alu 2 109 -34 1241 274 89 118 chr9 40794751 40795155 -77067472 - L2 LINE L2 -1105 2209 1750 210 146 24 0 chr9 40795225 40795266 -77067361 - MIR SINE MIR -110 152 111 191 258 161 0 chr9 40795407 40795469 -77067158 - MIR SINE MIR -139 123 52 539 337 39 5 chr9 40796274 40796479 -77066148 - MIR SINE MIR -10 252 41 184 220 0 40 chr9 40797014 40797064 -77065563 - MIR SINE MIR -114 148 101 821 172 0 0 chr9 40797286 40797414 -77065213 + AluJb SINE Alu 141 268 -44 200 299 37 19 chr9 40797443 40797550 -77065077 - L2 LINE L2 -177 3095 2987 1845 181 0 13 chr9 40797760 40798074 -77064553 - AluJb SINE Alu 0 312 3 306 0 0 0 chr9 40798086 40798120 -77064507 + (T)n Simple_repeat Simple_repeat 1 34 0 2885 145 95 2 chr9 40798484 40798980 -77063647 - MER34 LTR ERV1 0 542 1 200 333 47 31 chr9 40799180 40799309 -77063318 + L2 LINE L2 3136 3266 -6 307 176 0 40 chr9 40800044 40800139 -77062488 + L1MC/D LINE L1 5374 5464 -705 * 4482 217 55 57 chr9 40800127 40802262 -77060365 - L1ME1 LINE L1 -38 6522 4438 1931 153 7 10 chr9 40802384 40803055 -77059572 + AluJb SINE Alu 6 675 0 252 191 16 16 chr9 40803055 40803118 -77059509 - L1ME1 LINE L1 -4948 1592 1530 898 176 80 0 chr9 40803173 40803360 -77059267 - L1MB4 LINE L1 -2 6178 5977 2458 106 11 34 chr9 40803364 40803743 -77058884 - THE1C LTR MaLR -5 370 1 3452 170 52 13 chr9 40803743 40804228 -77058399 - L1MB4 LINE L1 -197 5983 5450 258 32 0 0 chr9 40804228 40804259 -77058368 + (TC)n Simple_repeat Simple_repeat 2 32 0 3452 170 52 13 chr9 40804259 40804627 -77058000 - L1MB4 LINE L1 -730 5450 5098 1684 222 95 21 chr9 40804623 40805105 -77057522 - L1ME1 LINE L1 -5826 895 378 * 930 156 7 0 chr9 40805445 40805586 -77057041 - AluSg/x SINE Alu -17 295 154 365 117 54 18 chr9 40805723 40805834 -77056793 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 252 339 69 62 chr9 40806400 40806674 -77055953 + L2 LINE L2 2977 3252 -20 302 287 98 42 chr9 40806865 40807008 -77055619 + L2 LINE L2 3122 3272 0 228 114 0 45 chr9 40807409 40807453 -77055174 - MIR SINE MIR -82 126 85 31 26 0 0 chr9 40807571 40807609 -77055018 + AT_rich Low_complexity Low_complexity 1 38 0 1662 169 8 0 chr9 40807609 40807875 -77054752 - L1PB3 LINE L1 -2 6152 5885 189 206 324 0 chr9 40808108 40808176 -77054451 - L2 LINE L2 0 3272 3183 233 316 13 0 chr9 40808305 40808384 -77054243 + L2 LINE L2 3188 3267 -5 278 214 168 15 chr9 40808837 40808968 -77053659 + MIR3 SINE MIR 36 186 -22 276 324 20 20 chr9 40809286 40809388 -77053239 + MIR SINE MIR 51 152 -56 794 139 15 0 chr9 40809486 40809623 -77053004 - L1 LINE L1 -1333 4813 4675 351 274 131 48 chr9 40809626 40809878 -77052749 + L2 LINE L2 2489 2761 -553 372 359 24 12 chr9 40810011 40810178 -77052449 + L2 LINE L2 2924 3092 -180 640 315 89 47 chr9 40810193 40810746 -77051881 - L1MEd LINE L1 -5262 1372 797 505 210 35 56 chr9 40810768 40810911 -77051716 - L1MEd LINE L1 -5920 622 483 2182 98 3 7 chr9 40811092 40811401 -77051226 + AluSx SINE Alu 1 308 0 22 0 0 0 chr9 40811464 40811486 -77051141 + AT_rich Low_complexity Low_complexity 1 22 0 693 248 32 50 chr9 40812686 40812968 -77049659 + LTR4 LTR ERV1 318 594 -2 972 146 0 7 chr9 40812968 40813119 -77049508 - AluSg SINE Alu -160 150 1 372 114 63 0 chr9 40813428 40813507 -77049120 + CT-rich Low_complexity Low_complexity 2 85 0 2104 134 20 0 chr9 40813533 40813839 -77048788 - AluSx SINE Alu 0 312 1 1511 176 3 30 chr9 40814257 40814552 -77048075 - AluJo SINE Alu -20 292 6 828 248 35 5 chr9 40814595 40814793 -77047834 + MIR SINE MIR 35 238 -24 230 329 47 0 chr9 40815027 40815112 -77047515 + MER91C DNA MER1_type 35 123 -17 2406 205 13 27 chr9 40815877 40816404 -77046223 + L1MB8 LINE L1 5653 6172 -6 21 0 0 0 chr9 40816935 40816956 -77045671 + AT_rich Low_complexity Low_complexity 1 21 0 364 298 99 0 chr9 40817473 40817614 -77045013 + L2 LINE L2 2722 2876 -438 2374 92 3 0 chr9 40821051 40821345 -77041282 - AluSp SINE Alu -16 297 3 2069 202 30 91 chr9 40822911 40823569 -77039058 + MER4D LTR ERV1 283 900 -3 3390 127 25 0 chr9 40823632 40824121 -77038506 + L1PA10 LINE L1 5657 6157 -11 2020 149 7 3 chr9 40824515 40824824 -77037803 - AluSq SINE Alu -3 310 1 901 199 0 161 chr9 40825634 40825895 -77036732 + MER58A DNA MER1_type 4 222 -2 602 307 136 37 chr9 40825980 40826196 -77036431 + MLT1L LTR MaLR 5 198 -417 2043 143 0 0 chr9 40826196 40826490 -77036137 + AluSc SINE Alu 1 294 -15 602 307 136 37 chr9 40826490 40826677 -77035950 + MLT1L LTR MaLR 198 448 -167 272 217 67 0 chr9 40826722 40826782 -77035845 + MLT1L LTR MaLR 546 609 -6 2919 213 121 39 chr9 40827601 40828334 -77034293 + Charlie1 DNA MER1_type 1605 2435 -326 1939 123 7 7 chr9 40828334 40828619 -77034008 + AluSx SINE Alu 1 285 -27 2919 213 121 39 chr9 40828619 40828835 -77033792 + Charlie1 DNA MER1_type 2435 2632 -129 322 226 177 0 chr9 40828836 40828960 -77033667 + L1M2 LINE L1 5296 5441 -856 1616 196 45 32 chr9 40828960 40829364 -77033263 - LTR52 LTR ERVL -3 418 10 484 263 103 5 chr9 40829371 40829565 -77033062 + L1ME LINE L1 5435 5647 -517 1097 222 13 4 chr9 40829690 40829920 -77032707 + Tigger2 DNA MER2_type 2487 2718 0 41 21 0 0 chr9 40830185 40830233 -77032394 + AT_rich Low_complexity Low_complexity 1 48 0 2295 104 0 0 chr9 40830267 40830564 -77032063 - AluSx SINE Alu -15 297 1 202 324 64 52 chr9 40830952 40831125 -77031502 + MIR SINE MIR 41 215 -47 252 143 82 0 chr9 40831727 40831825 -77030802 + (TA)n Simple_repeat Simple_repeat 1 106 0 209 91 15 45 chr9 40831833 40831899 -77030728 + (TAAAAA)n Simple_repeat Simple_repeat 6 69 0 242 123 0 74 chr9 40831899 40831980 -77030647 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 474 263 22 7 chr9 40832209 40832346 -77030281 + L1MD1 LINE L1 3496 3634 -2512 378 0 0 0 chr9 40832346 40832388 -77030239 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5013 247 61 25 chr9 40832780 40833084 -77029543 + L1MD1 LINE L1 3624 3916 -2326 1886 124 41 7 chr9 40833084 40833375 -77029252 + AluSx SINE Alu 2 302 -10 5013 247 61 25 chr9 40833375 40835594 -77027033 + L1MD1 LINE L1 3916 6234 -8 1632 193 16 86 chr9 40835592 40835977 -77026650 + L1MC5 LINE L1 6616 6960 -1001 * 1797 158 14 7 chr9 40835977 40836268 -77026359 + AluJo SINE Alu 1 293 -19 1632 193 16 86 chr9 40836268 40836380 -77026247 + L1MC5 LINE L1 6960 7078 -883 607 260 131 11 chr9 40836429 40836790 -77025837 + L2 LINE L2 2639 3044 -269 236 295 76 83 chr9 40836845 40836967 -77025660 - L2 LINE L2 -20 3252 3131 369 0 0 0 chr9 40836967 40837008 -77025619 + (CA)n Simple_repeat Simple_repeat 2 42 0 236 295 76 83 chr9 40837008 40837173 -77025454 - L2 LINE L2 -141 3131 2967 439 195 37 0 chr9 40837179 40837261 -77025366 + MLT1E2 LTR MaLR 106 190 -436 2248 229 111 36 chr9 40837281 40838593 -77024034 - L1ME LINE L1 -370 6030 4613 2296 228 34 29 chr9 40838639 40839381 -77023246 - L1ME LINE L1 -4517 1786 771 189 0 0 0 chr9 40839757 40839778 -77022849 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 1081 298 79 23 chr9 40839964 40840802 -77021825 - L2 LINE L2 -2 3311 2416 810 116 0 9 chr9 40840915 40841027 -77021600 - AluSg/x SINE Alu -30 282 172 1594 173 75 16 chr9 40841030 40841348 -77021279 - L1MA9 LINE L1 -157 6155 5819 819 111 0 9 chr9 40841348 40841456 -77021171 + AluSg/x SINE Alu 195 301 -11 1891 149 29 16 chr9 40841481 40841789 -77020838 + AluSx SINE Alu 1 312 0 425 281 18 9 chr9 40841971 40842085 -77020542 + MIR SINE MIR 32 146 -116 1616 189 207 3 chr9 40842096 40842131 -77020496 - LTR46 LTR ERV1 0 460 433 495 0 0 0 chr9 40842131 40842186 -77020441 + (CA)n Simple_repeat Simple_repeat 2 56 0 1616 189 207 3 chr9 40842186 40842532 -77020095 - LTR46 LTR ERV1 -27 433 1 421 301 127 12 chr9 40842574 40842833 -77019794 - L2 LINE L2 -24 3289 3001 426 178 12 24 chr9 40847332 40847498 -77015129 + HSAT5 Satellite Satellite 1 164 -3 248 286 0 12 chr9 40847573 40847689 -77014938 + HSAT5 Satellite Satellite 1 114 -1 329 232 0 12 chr9 40847735 40847817 -77014810 + HSAT5 Satellite Satellite 3 83 -3 229 203 58 29 chr9 40847893 40847962 -77014665 + HSAT5 Satellite Satellite 1 71 -15 293 211 14 21 chr9 40848063 40848158 -77014469 + HSAT5 Satellite Satellite 1 94 -20 * 527 224 42 33 chr9 40848136 40848312 -77014315 - MSTA LTR MaLR -130 296 127 655 252 178 21 chr9 40848359 40848601 -77014026 + MST-int LTR MaLR 977 1256 -395 281 179 18 0 chr9 40848589 40848645 -77013982 - THE1-int LTR MaLR -613 967 911 * 2417 143 68 9 chr9 40848829 40849268 -77013359 + L1P LINE L1 4781 5245 -901 840 313 62 6 chr9 40849301 40849637 -77012990 - HERVL-D LTR ERVL -5296 358 4 1164 167 34 38 chr9 40849688 40849914 -77012713 - MLT2D LTR ERVL -151 263 39 279 126 89 0 chr9 40849914 40849966 -77012661 - MLT2D LTR ERVL 0 414 367 1175 276 68 56 chr9 40850074 40850559 -77012068 - MLT2B3 LTR ERVL -63 491 1 476 296 6 6 chr9 40850603 40850782 -77011845 - L1ME LINE L1 -3595 2620 2442 1204 269 58 118 chr9 40850819 40852036 -77010591 - L1ME LINE L1 -4140 2256 1113 2590 59 0 0 chr9 40852087 40852391 -77010236 - AluY SINE Alu -7 304 1 21 0 0 0 chr9 40852401 40852422 -77010205 + AT_rich Low_complexity Low_complexity 1 21 0 251 257 114 70 chr9 40852425 40852728 -77009899 - L1ME LINE L1 -5247 958 623 1709 262 74 58 chr9 40852983 40853782 -77008845 + MER21B LTR ERV1 1 812 -51 319 293 55 44 chr9 40853882 40854063 -77008564 - L1ME LINE L1 -6101 295 113 1480 251 43 39 chr9 40855668 40855848 -77006779 - L1 LINE L1 -3202 2944 2766 2285 100 0 7 chr9 40855848 40856147 -77006480 - AluSg SINE Alu -13 297 1 1480 251 43 39 chr9 40856147 40856518 -77006109 - L1 LINE L1 -3380 2766 2383 793 135 16 0 chr9 41056728 41056854 -76805773 - FLAM_C SINE Alu 0 143 16 1931 133 20 0 chr9 41056885 41057179 -76805448 - AluSx SINE Alu -12 300 1 2651 23 0 0 chr9 41057427 41057730 -76804897 + AluY SINE Alu 3 305 -6 869 166 0 6 chr9 41057822 41057985 -76804642 - AluSc SINE Alu -15 294 133 22 35 0 0 chr9 41058696 41058725 -76803902 + GC_rich Low_complexity Low_complexity 1 29 0 2088 99 7 0 chr9 41059649 41059932 -76802695 - AluSg SINE Alu -21 289 5 1997 115 3 10 chr9 41060140 41060444 -76802183 - AluSx SINE Alu -9 303 2 811 167 100 0 chr9 41060445 41060595 -76802032 - FRAM SINE Alu -1 165 1 2145 98 0 0 chr9 41062205 41062500 -76800127 - AluSg1 SINE Alu -14 295 1 2230 98 0 3 chr9 41062823 41063128 -76799499 - AluY SINE Alu -7 304 1 1966 97 15 0 chr9 41063128 41063397 -76799230 - AluSq SINE Alu -17 296 24 2131 95 0 48 chr9 41063504 41063651 -76798976 + AluSx SINE Alu 1 127 -185 2423 57 0 3 chr9 41063651 41063951 -76798676 + AluY SINE Alu 1 299 -12 2131 95 0 48 chr9 41063951 41064119 -76798508 + AluSx SINE Alu 127 301 -11 2392 71 0 3 chr9 41064119 41064427 -76798200 + AluY SINE Alu 1 307 -4 1824 153 27 0 chr9 41064627 41064922 -76797705 + AluSx SINE Alu 2 304 -8 185 333 40 20 chr9 41064966 41065065 -76797562 + MIR SINE MIR 37 137 -71 330 342 18 0 chr9 41065073 41065184 -76797443 - L1MC4 LINE L1 -100 7942 7830 1208 169 138 4 chr9 41065215 41065475 -76797152 + AluJo SINE Alu 1 295 -17 2156 97 3 26 chr9 41065475 41065783 -76796844 + AluSp SINE Alu 1 301 -12 1662 164 33 13 chr9 41065950 41066249 -76796378 - AluJb SINE Alu -7 305 1 1929 116 46 0 chr9 41066336 41066620 -76796007 + AluSx SINE Alu 1 297 -15 2106 101 14 0 chr9 41066638 41066924 -76795703 + AluSc SINE Alu 7 296 -13 818 154 0 29 chr9 41067093 41067229 -76795398 + FRAM SINE Alu 19 150 -26 1723 170 13 3 chr9 41067240 41067574 -76795053 + AluJb SINE Alu 1 312 0 5133 111 26 51 chr9 41067574 41067658 -76794969 + L1MA4A LINE L1 5361 5446 -857 1946 104 7 37 chr9 41067658 41067796 -76794831 + AluSx SINE Alu 6 147 -165 2287 75 3 0 chr9 41067796 41068091 -76794536 + AluY SINE Alu 1 296 -15 1946 104 7 37 chr9 41068091 41068250 -76794377 + AluSx SINE Alu 147 294 -18 5133 111 26 51 chr9 41068250 41068350 -76794277 + L1MA4A LINE L1 5446 5547 -756 2303 100 3 0 chr9 41068350 41068659 -76793968 + AluSp SINE Alu 1 310 -3 5133 111 26 51 chr9 41068659 41068760 -76793867 + L1MA4A LINE L1 5547 5649 -654 1947 143 3 0 chr9 41068760 41069060 -76793567 + AluSq SINE Alu 1 301 -12 5133 111 26 51 chr9 41069060 41069729 -76792898 + L1MA4A LINE L1 5649 6293 -10 2150 122 0 0 chr9 41069731 41070042 -76792585 - AluSx SINE Alu -1 311 1 1826 166 3 0 chr9 41070045 41070341 -76792286 - AluSx SINE Alu -15 297 1 24 32 0 0 chr9 41070341 41070372 -76792255 + AT_rich Low_complexity Low_complexity 1 31 0 35 41 0 0 chr9 41070471 41070520 -76792107 + AT_rich Low_complexity Low_complexity 1 49 0 2061 57 4 4 chr9 41071099 41071362 -76791265 + AluSp SINE Alu 1 263 -50 494 113 0 0 chr9 41071362 41071433 -76791194 + AluSp/q SINE Alu 229 299 -14 1661 142 45 3 chr9 41071434 41071723 -76790904 + AluJo SINE Alu 1 301 -11 324 107 36 0 chr9 41073481 41073583 -76789044 + Alu SINE Alu 225 328 0 342 273 55 9 chr9 41073600 41073710 -76788917 - MIR SINE MIR -40 222 108 249 33 0 0 chr9 41074602 41074632 -76787995 + (A)n Simple_repeat Simple_repeat 1 30 0 423 100 17 0 chr9 41074881 41074941 -76787686 + AluJo SINE Alu 39 99 -213 1077 155 0 84 chr9 41074986 41075173 -76787454 + AluJo SINE Alu 99 265 -47 2174 113 3 0 chr9 41075173 41075475 -76787152 - AluSx SINE Alu -9 303 1 1077 155 0 84 chr9 41075475 41075513 -76787114 + AluJo SINE Alu 265 305 -7 1981 135 10 0 chr9 41075516 41075813 -76786814 + AluSx SINE Alu 6 305 -7 336 295 173 0 chr9 41075844 41075983 -76786644 + MIR SINE MIR 94 256 -6 180 219 0 0 chr9 41075954 41075995 -76786632 + L2 LINE L2 3273 3313 0 * 267 330 11 0 chr9 41076071 41076162 -76786465 - MIR SINE MIR -68 140 49 865 225 0 0 chr9 41076310 41076488 -76786139 - AluJb SINE Alu -6 306 129 1998 133 10 3 chr9 41076507 41076807 -76785820 + AluJb SINE Alu 2 303 -9 191 380 16 16 chr9 41076818 41076939 -76785688 - L2 LINE L2 -7 3306 3186 * 207 235 88 15 chr9 41076908 41076976 -76785651 - L2 LINE L2 0 3272 3200 185 284 170 50 chr9 41077021 41077162 -76785465 - L2 LINE L2 -172 3100 2943 2110 82 0 7 chr9 41077194 41077473 -76785154 + AluSx SINE Alu 35 311 -1 281 370 69 14 chr9 41077481 41077770 -76784857 - L2 LINE L2 -456 2858 2554 310 321 71 63 chr9 41078103 41078579 -76784048 - L2 LINE L2 -7 3306 2827 1607 185 28 0 chr9 41078665 41078951 -76783676 - AluJb SINE Alu -18 294 1 473 189 24 39 chr9 41078994 41079121 -76783506 - L1MB3 LINE L1 0 6183 6059 2131 110 0 10 chr9 41079122 41079422 -76783205 - AluSg SINE Alu -13 297 1 877 135 15 0 chr9 41079449 41079582 -76783045 - FRAM SINE Alu -22 154 20 2130 125 0 0 chr9 41079791 41080088 -76782539 - AluSg SINE Alu -13 297 1 334 330 19 9 chr9 41080092 41080198 -76782429 - MIR3 SINE MIR -101 107 1 2049 123 0 10 chr9 41080447 41080768 -76781859 - AluSq SINE Alu 0 313 1 1696 138 8 0 chr9 41080768 41081036 -76781591 - AluSx SINE Alu -8 304 35 433 154 0 0 chr9 41081157 41081222 -76781405 + AluSp/q SINE Alu 223 287 -26 2224 82 0 3 chr9 41081234 41081525 -76781102 + AluSq SINE Alu 1 290 -23 256 172 31 31 chr9 41081541 41081605 -76781022 + A-rich Low_complexity Low_complexity 1 64 0 2362 77 0 0 chr9 41081613 41081913 -76780714 + AluSc SINE Alu 2 301 -8 2233 105 0 3 chr9 41082223 41082529 -76780098 - AluSx SINE Alu -7 305 1 2322 78 3 3 chr9 41083364 41083673 -76778954 - AluSc SINE Alu 0 309 1 1505 131 113 22 chr9 41083674 41083948 -76778679 - AluSx SINE Alu -13 299 1 641 193 8 0 chr9 41084117 41084236 -76778391 - FLAM_A SINE Alu -4 138 19 1581 197 151 28 chr9 41084321 41084525 -76778102 + LTR2B LTR ERV1 7 185 -305 186 43 0 0 chr9 41084525 41084548 -76778079 + (TCCTG)n Simple_repeat Simple_repeat 2 24 0 1581 197 151 28 chr9 41084548 41084774 -76777853 + LTR2B LTR ERV1 185 490 0 2030 110 7 10 chr9 41085165 41085473 -76777154 - AluSx SINE Alu 0 312 6 1235 154 20 142 chr9 41086818 41086990 -76775637 - AluJo SINE Alu 0 302 191 1582 149 4 15 chr9 41086990 41087149 -76775478 - AluSq SINE Alu -20 293 137 2268 66 0 13 chr9 41087149 41087451 -76775176 - AluY SINE Alu -13 298 1 1582 149 4 15 chr9 41087451 41087553 -76775074 - AluSq SINE Alu -176 137 35 1235 154 20 142 chr9 41087553 41087724 -76774903 - AluJo SINE Alu -111 191 1 22 35 0 0 chr9 41089435 41089464 -76773163 + AT_rich Low_complexity Low_complexity 1 29 0 1475 179 7 14 chr9 41089500 41089809 -76772818 - AluJb SINE Alu 0 307 1 986 122 0 0 chr9 41089834 41089973 -76772654 - AluSq SINE Alu -29 284 146 524 284 61 61 chr9 41090026 41090389 -76772238 + Charlie8 DNA MER1_type 19 381 -2036 247 328 0 0 chr9 41090395 41090462 -76772165 + Charlie8 DNA MER1_type 1356 1422 -995 273 267 0 0 chr9 41090882 41090942 -76771685 - MIR SINE MIR -122 140 81 2233 116 0 0 chr9 41091724 41092034 -76770593 - AluSx SINE Alu -2 310 1 986 98 0 0 chr9 41092036 41092169 -76770458 - AluSq/x SINE Alu -179 133 1 2356 82 0 9 chr9 41092502 41092818 -76769809 - AluSq SINE Alu 0 313 1 2117 106 0 0 chr9 41093073 41093356 -76769271 + AluSq SINE Alu 1 283 -30 2323 75 0 13 chr9 41093357 41093665 -76768962 + AluY SINE Alu 1 304 -7 23 0 0 0 chr9 41093680 41093703 -76768924 + AT_rich Low_complexity Low_complexity 1 23 0 914 192 30 30 chr9 41093879 41094108 -76768519 - AluJo SINE Alu 0 310 82 683 182 50 0 chr9 41094126 41094247 -76768380 - FLAM_C SINE Alu -5 128 2 841 207 12 12 chr9 41094272 41094398 -76768229 + AluJb SINE Alu 2 130 -182 2250 101 0 3 chr9 41094398 41094706 -76767921 + AluSc SINE Alu 1 307 -2 841 207 12 12 chr9 41094706 41094748 -76767879 + AluJb SINE Alu 129 170 -142 1069 122 0 0 chr9 41094940 41095096 -76767531 - AluJb SINE Alu -24 288 133 346 306 66 0 chr9 41095338 41095459 -76767168 + L2 LINE L2 3182 3310 -3 2739 84 40 13 chr9 41095547 41095992 -76766635 + LTR21A LTR ERV1 1 490 -15 2863 97 156 97 chr9 41095992 41096030 -76766597 + HERVFH21 LTR ERV1 5 39 -6490 183 42 0 0 chr9 41096030 41096054 -76766573 + (CTCA)n Simple_repeat Simple_repeat 2 25 0 2863 97 156 97 chr9 41096054 41096474 -76766153 + HERVFH21 LTR ERV1 39 511 -6018 2525 47 0 0 chr9 41096474 41096773 -76765854 - AluY SINE Alu -12 299 1 2863 97 156 97 chr9 41096773 41096930 -76765697 + HERVFH21 LTR ERV1 511 657 -5872 1814 194 71 49 chr9 41096947 41097139 -76765488 + LTR2B LTR ERV1 32 218 -272 2377 64 0 0 chr9 41097139 41097434 -76765193 + AluY SINE Alu 1 295 -16 1814 194 71 49 chr9 41097434 41097690 -76764937 + LTR2B LTR ERV1 218 490 0 9043 157 6 26 chr9 41097690 41099388 -76763239 + HERVFH21 LTR ERV1 652 2314 -4215 4260 92 19 3 chr9 41099368 41099985 -76762642 + HERVFH21 LTR ERV1 3075 3701 -2828 * 1467 93 0 0 chr9 41100011 41100204 -76762423 - AluSx SINE Alu -119 193 1 2171 83 0 0 chr9 41100204 41100505 -76762122 + HERVFH21 LTR ERV1 3685 3985 -2544 7986 144 13 8 chr9 41100665 41102104 -76760523 + HERVFH21 LTR ERV1 5344 6529 0 2727 94 47 7 chr9 41102104 41102551 -76760076 + LTR21A LTR ERV1 1 497 -8 1802 173 116 31 chr9 41102814 41103237 -76759390 + LTR2B LTR ERV1 32 490 0 1979 115 3 14 chr9 41103238 41103533 -76759094 - AluSx SINE Alu -20 292 1 2359 87 3 0 chr9 41103547 41103859 -76758768 - AluSp SINE Alu 0 313 1 2050 122 0 0 chr9 41103859 41104154 -76758473 - AluSx SINE Alu -16 296 2 2215 101 3 0 chr9 41105420 41105718 -76756909 + AluSq SINE Alu 1 299 -14 2381 73 0 3 chr9 41105740 41106042 -76756585 + AluY SINE Alu 1 301 -10 2351 87 0 3 chr9 41106545 41106854 -76755773 + AluY SINE Alu 1 308 -3 2207 107 0 0 chr9 41107256 41107556 -76755071 + AluSp SINE Alu 2 301 -12 270 336 56 8 chr9 41107902 41108027 -76754600 + MER34 LTR ERV1 352 482 -60 555 219 18 0 chr9 41108027 41108141 -76754486 - FLAM_C SINE Alu -8 135 20 553 119 0 30 chr9 41108625 41108726 -76753901 + MER4A LTR ERV1 1 98 -566 * 1267 148 53 74 chr9 41108722 41109079 -76753548 + MER4A LTR ERV1 257 664 0 1333 144 40 107 chr9 41110354 41110680 -76751947 - AluJo SINE Alu -8 304 1 2314 99 0 3 chr9 41112128 41112441 -76750186 - AluSq SINE Alu -1 312 1 1587 189 10 7 chr9 41112490 41112792 -76749835 - AluJb SINE Alu -3 309 7 479 262 94 71 chr9 41112826 41113199 -76749428 + Charlie8 DNA MER1_type 11 381 -2036 2190 91 0 26 chr9 41114177 41114484 -76748143 + AluSc SINE Alu 1 299 -10 180 354 0 0 chr9 41114494 41114542 -76748085 + MER5B DNA MER1_type 63 110 -68 2164 92 0 10 chr9 41115736 41116031 -76746596 - AluSg SINE Alu -14 296 5 206 180 0 40 chr9 41117545 41117595 -76745032 + G-rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr9 41117683 41117721 -76744906 + GC_rich Low_complexity Low_complexity 1 38 0 1949 108 87 0 chr9 41120463 41120750 -76741877 - AluSx SINE Alu 0 312 1 1696 168 3 23 chr9 41120752 41121062 -76741565 - AluJo SINE Alu -8 304 1 224 276 153 10 chr9 41121133 41121231 -76741396 - L2 LINE L2 -17 3255 3144 2082 100 45 0 chr9 41121337 41121628 -76740999 - AluSx SINE Alu -8 304 1 319 343 90 60 chr9 41121664 41122153 -76740474 - L2 LINE L2 -2 3270 2771 335 319 37 7 chr9 41122479 41122621 -76740006 - MIR SINE MIR -65 143 21 2247 99 0 0 chr9 41122886 41123180 -76739447 - AluSx SINE Alu -17 295 2 2150 92 3 0 chr9 41123188 41123503 -76739124 - AluSp SINE Alu 0 316 1 581 328 39 27 chr9 41123512 41123768 -76738859 + L2 LINE L2 2992 3250 -22 183 275 22 163 chr9 41123801 41123870 -76738757 + MIR3 SINE MIR 56 86 -122 1723 163 3 3 chr9 41123870 41124153 -76738474 - AluJb SINE Alu -29 283 1 183 275 22 163 chr9 41124153 41124261 -76738366 + MIR3 SINE MIR 86 208 0 222 278 40 66 chr9 41124739 41124890 -76737737 + L2 LINE L2 2857 3003 -310 1026 151 13 0 chr9 41124909 41125068 -76737559 - FRAM SINE Alu -16 160 1 2053 123 3 0 chr9 41125079 41125364 -76737263 - AluSx SINE Alu -26 286 1 2165 109 6 3 chr9 41125827 41126138 -76736489 - AluSx SINE Alu 0 312 1 1727 150 3 26 chr9 41126831 41127137 -76735490 - AluJo SINE Alu -13 299 1 417 335 94 28 chr9 41127490 41127777 -76734850 + L2 LINE L2 2919 3224 -48 2150 122 0 0 chr9 41127777 41128073 -76734554 + AluSx SINE Alu 2 297 -15 2214 114 0 0 chr9 41128319 41128616 -76734011 - AluSx SINE Alu -15 297 1 197 363 99 20 chr9 41128704 41128996 -76733631 - L2 LINE L2 -431 2883 2569 2386 100 0 0 chr9 41129181 41129492 -76733135 + AluSx SINE Alu 1 311 -1 1721 138 0 62 chr9 41129582 41129729 -76732898 + AluSq SINE Alu 1 123 -190 2386 77 0 0 chr9 41129729 41130026 -76732601 + AluSg SINE Alu 1 297 -13 1721 138 0 62 chr9 41130026 41130169 -76732458 + AluSq SINE Alu 123 273 -40 238 286 211 32 chr9 41130605 41130790 -76731837 - MIR SINE MIR -36 226 9 2209 104 0 10 chr9 41131303 41131610 -76731017 + AluSx SINE Alu 1 304 -8 2111 130 0 0 chr9 41131698 41131999 -76730628 - AluSx SINE Alu -11 301 1 602 281 30 4 chr9 41132207 41132505 -76730122 + MER87 LTR ERV1 209 541 0 244 257 0 124 chr9 41132517 41132630 -76729997 + L2 LINE L2 3085 3183 -89 508 361 23 18 chr9 41132717 41132936 -76729691 + MIR SINE MIR 28 247 -15 278 311 137 31 chr9 41133514 41133675 -76728952 - MIR SINE MIR -70 192 15 1504 166 41 51 chr9 41134124 41134250 -76728377 + AluJo SINE Alu 1 127 -185 1743 189 0 0 chr9 41134250 41134547 -76728080 - AluJo SINE Alu -15 297 1 1504 166 41 51 chr9 41134547 41134715 -76727912 + AluJo SINE Alu 127 292 -20 347 390 0 0 chr9 41134733 41134851 -76727776 + L1ME LINE L1 5701 5818 -303 327 318 58 76 chr9 41134866 41135089 -76727538 - MIR SINE MIR -11 251 33 2098 141 3 3 chr9 41135097 41135409 -76727218 - AluSx SINE Alu 0 312 1 1565 164 9 97 chr9 41135425 41135755 -76726872 - AluJo SINE Alu 0 302 2 2391 82 3 0 chr9 41135791 41136094 -76726533 + AluSq SINE Alu 1 304 -9 2468 64 0 10 chr9 41136096 41136410 -76726217 + AluY SINE Alu 1 311 0 421 172 44 1 chr9 41136414 41136516 -76726111 + L1MB3 LINE L1 5725 5829 -354 787 169 0 0 chr9 41136517 41136635 -76725992 + FLAM_C SINE Alu 1 118 -15 2013 112 0 58 chr9 41136641 41136816 -76725811 - AluSx SINE Alu -17 295 144 2519 39 7 3 chr9 41136816 41137126 -76725501 - AluY SINE Alu 0 311 1 2013 112 0 58 chr9 41137126 41137263 -76725364 - AluSx SINE Alu -168 144 1 2471 39 19 19 chr9 41137715 41138026 -76724601 - AluY SINE Alu 0 311 1 2302 103 0 0 chr9 41138026 41138326 -76724301 - AluSx SINE Alu -11 301 1 1486 180 36 20 chr9 41138402 41138708 -76723919 - AluJo SINE Alu -1 311 1 205 258 34 22 chr9 41138712 41138801 -76723826 - MIR SINE MIR -66 142 53 1967 128 10 16 chr9 41139265 41139569 -76723058 - AluSx SINE Alu -10 302 1 1390 152 12 32 chr9 41139572 41139822 -76722805 - AluJo SINE Alu -6 306 62 1016 129 34 0 chr9 41139822 41139969 -76722658 - AluSq/x SINE Alu -161 152 1 274 184 138 23 chr9 41140348 41140435 -76722192 - MER117 DNA MER1_type -55 142 46 211 302 60 43 chr9 41140526 41140642 -76721985 - MIR SINE MIR -26 236 119 565 179 6 31 chr9 41140644 41140806 -76721821 + CT-rich Low_complexity Low_complexity 4 161 0 329 259 59 15 chr9 41141043 41141178 -76721449 + L1MC5 LINE L1 7785 7925 -36 1955 143 0 16 chr9 41141188 41141496 -76721131 + AluSx SINE Alu 1 303 -9 2235 107 0 3 chr9 41141538 41141837 -76720790 - AluSq SINE Alu -15 298 1 2572 43 0 0 chr9 41141881 41142185 -76720442 - AluY SINE Alu -7 304 1 1840 139 31 7 chr9 41142256 41142543 -76720084 - AluJo SINE Alu -18 294 1 2212 118 0 3 chr9 41142701 41143007 -76719620 - AluSp SINE Alu -8 305 1 21 36 0 0 chr9 41143011 41143039 -76719588 + AT_rich Low_complexity Low_complexity 1 28 0 1800 142 0 77 chr9 41143156 41143282 -76719345 + AluJo SINE Alu 2 136 -176 2109 85 53 0 chr9 41143282 41143564 -76719063 - AluSq SINE Alu -16 297 1 1800 142 0 77 chr9 41143564 41143774 -76718853 + AluJo SINE Alu 136 312 0 743 194 0 8 chr9 41143783 41143912 -76718715 + FLAM_A SINE Alu 1 128 -5 2238 85 0 0 chr9 41143915 41144249 -76718378 + AluSx SINE Alu 1 334 0 1947 109 0 85 chr9 41144252 41144566 -76718061 + AluSx SINE Alu 1 285 -27 699 99 0 0 chr9 41144566 41144667 -76717960 + (TA)n Simple_repeat Simple_repeat 2 102 0 1947 109 0 85 chr9 41144667 41144692 -76717935 + AluSx SINE Alu 285 311 -1 239 308 86 26 chr9 41144703 41144820 -76717807 - MIR SINE MIR -108 154 31 1789 169 3 10 chr9 41145412 41145714 -76716913 - AluJo SINE Alu -12 300 1 800 201 26 0 chr9 41145891 41146045 -76716582 - FRAM SINE Alu -8 158 1 1160 101 48 0 chr9 41146071 41146239 -76716388 - AluSg SINE Alu -95 215 40 504 135 14 0 chr9 41146294 41146368 -76716259 - AluS SINE Alu -238 75 1 1494 167 40 63 chr9 41146370 41146553 -76716074 - AluJb SINE Alu -16 296 121 2181 104 3 7 chr9 41146553 41146852 -76715775 + AluSx SINE Alu 1 298 -14 1494 167 40 63 chr9 41146852 41146967 -76715660 - AluJb SINE Alu -191 121 5 2357 61 3 0 chr9 41146973 41147268 -76715359 - AluY SINE Alu -15 296 1 229 118 0 0 chr9 41147319 41147353 -76715274 - Alu SINE Alu -269 34 1 24 0 0 0 chr9 41147362 41147386 -76715241 + AT_rich Low_complexity Low_complexity 1 24 0 1754 169 0 22 chr9 41147386 41147705 -76714922 + AluJo SINE Alu 1 312 0 1892 135 0 60 chr9 41148462 41148780 -76713847 - AluJo SINE Alu -9 303 5 937 106 8 0 chr9 41148875 41149007 -76713620 + AluSq/x SINE Alu 3 135 -178 2240 104 0 0 chr9 41149007 41149305 -76713322 + AluSq SINE Alu 1 298 -15 320 287 152 0 chr9 41149722 41149886 -76712741 + MIR SINE MIR 51 239 -23 2153 113 0 7 chr9 41150423 41150724 -76711903 - AluSx SINE Alu -13 299 1 2167 90 10 0 chr9 41150758 41151091 -76711536 + AluY SINE Alu 3 338 0 1832 168 3 10 chr9 41151151 41151460 -76711167 + AluJo SINE Alu 1 307 -5 2265 50 43 0 chr9 41151494 41151776 -76710851 + AluY SINE Alu 2 295 -16 2226 92 7 3 chr9 41151785 41152091 -76710536 + AluSx SINE Alu 1 307 -5 381 331 0 24 chr9 41152396 41152523 -76710104 + MIR SINE MIR 8 131 -131 852 246 22 0 chr9 41152523 41152706 -76709921 + AluJb SINE Alu 115 301 -11 224 229 16 16 chr9 41152707 41152768 -76709859 + MIR SINE MIR 154 214 -48 201 250 0 0 chr9 41152833 41152881 -76709746 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 2135 115 7 3 chr9 41152911 41153216 -76709411 - AluSx SINE Alu -6 306 1 598 179 0 0 chr9 41153255 41153350 -76709277 - AluJb SINE Alu -84 228 134 1810 95 0 8 chr9 41153350 41153592 -76709035 - AluSx SINE Alu -14 298 59 1951 221 25 41 chr9 41153657 41154088 -76708539 - MER74B LTR ERVL 0 622 186 2250 102 0 3 chr9 41154088 41154392 -76708235 - AluSx SINE Alu -9 303 1 1954 139 0 0 chr9 41154395 41154683 -76707944 - AluSx SINE Alu -24 288 1 1951 221 25 41 chr9 41154683 41154807 -76707820 - MER74B LTR ERVL -438 184 72 1036 189 0 0 chr9 41155440 41155609 -76707018 - AluJb SINE Alu -10 302 134 2103 97 33 10 chr9 41155609 41155909 -76706718 - AluSx SINE Alu -5 307 1 347 313 125 14 chr9 41155914 41156122 -76706505 + L2 LINE L2 2310 2540 -774 1165 135 0 0 chr9 41156122 41156292 -76706335 - FRAM SINE Alu -10 166 1 2011 127 0 39 chr9 41156319 41156626 -76706001 + AluSx SINE Alu 1 295 -17 2016 102 11 7 chr9 41156626 41156932 -76705695 + AluSx SINE Alu 1 308 0 1086 163 99 10 chr9 41156944 41157146 -76705481 + AluJo SINE Alu 1 220 -92 249 163 0 23 chr9 41157129 41157172 -76705455 + Alu SINE Alu 69 110 -192 * 1425 76 0 0 chr9 41157170 41157343 -76705284 - AluY SINE Alu -8 303 133 1109 175 0 0 chr9 41157377 41157543 -76705084 + FRAM SINE Alu 1 166 0 287 278 156 20 chr9 41157545 41157799 -76704828 + L2 LINE L2 2741 3029 -243 27 73 0 0 chr9 41157811 41157866 -76704761 + AT_rich Low_complexity Low_complexity 1 55 0 1020 104 15 0 chr9 41157912 41158047 -76704580 - AluSq SINE Alu -12 301 165 514 137 0 0 chr9 41158047 41158120 -76704507 - AluSq SINE Alu -239 73 1 1723 140 52 65 chr9 41158505 41158813 -76703814 + AluJo SINE Alu 1 304 -8 2212 80 12 86 chr9 41158815 41159151 -76703476 + AluY SINE Alu 1 311 0 386 156 26 0 chr9 41159153 41159230 -76703397 + G-rich Low_complexity Low_complexity 5 83 0 293 115 0 19 chr9 41159219 41159271 -76703356 + (GGAA)n Simple_repeat Simple_repeat 1 51 0 * 2338 78 4 0 chr9 41159411 41159729 -76702898 - AluSx SINE Alu 0 319 1 2189 120 3 7 chr9 41159730 41160039 -76702588 - AluSx SINE Alu -4 308 1 253 309 74 0 chr9 41161050 41161131 -76701496 + L2 LINE L2 3136 3222 -50 341 43 0 0 chr9 41161171 41161218 -76701409 + U7 snRNA snRNA 2 48 -15 25 0 0 0 chr9 41161237 41161262 -76701365 + AT_rich Low_complexity Low_complexity 1 25 0 1602 149 0 0 chr9 41161308 41161543 -76701084 + AluJo SINE Alu 70 304 -8 1255 206 29 19 chr9 41161738 41162054 -76700573 + L2 LINE L2 2575 2893 -421 558 168 9 18 chr9 41162056 41162169 -76700458 - AluJo/FRAM SINE Alu 0 312 201 2269 116 0 10 chr9 41162171 41162482 -76700145 + AluSq SINE Alu 1 308 -5 384 200 7 12 chr9 41162490 41162612 -76700015 - AluJ/FLAM SINE Alu -223 79 21 2242 97 23 0 chr9 41162995 41163169 -76699458 - AluSq SINE Alu -7 306 121 374 0 22 0 chr9 41163169 41163215 -76699412 + (TG)n Simple_repeat Simple_repeat 2 48 0 2242 97 23 0 chr9 41163215 41163339 -76699288 - AluSq SINE Alu -192 121 1 1860 164 7 0 chr9 41163350 41163642 -76698985 - AluJo SINE Alu -18 294 1 1675 158 49 18 chr9 41164124 41164409 -76698218 + AluJo SINE Alu 1 294 -18 2182 105 40 0 chr9 41164410 41164706 -76697921 + AluSq SINE Alu 1 308 -5 237 277 0 15 chr9 41164814 41164879 -76697748 + LTR67 LTR ERVL 490 553 -4 2592 71 3 0 chr9 41165623 41165933 -76696694 - AluY SINE Alu 0 311 1 201 133 0 0 chr9 41165952 41165982 -76696645 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2327 104 10 0 chr9 41165988 41166295 -76696332 - AluSg SINE Alu 0 310 1 460 170 37 15 chr9 41166297 41166432 -76696195 + CT-rich Low_complexity Low_complexity 3 140 0 1627 166 30 4 chr9 41166443 41166708 -76695919 - AluJb SINE Alu -5 307 36 1546 144 84 40 chr9 41166781 41167079 -76695548 - AluJo SINE Alu -1 311 1 466 260 39 11 chr9 41167237 41167413 -76695214 + MIR SINE MIR 20 196 -65 2388 97 0 3 chr9 41167416 41167716 -76694911 + AluSq SINE Alu 1 299 -14 381 154 110 0 chr9 41167717 41167808 -76694819 + MER113 DNA MER1_type? 1 101 -420 1911 133 32 39 chr9 41168025 41168083 -76694544 + AluJb SINE Alu 2 59 -253 2288 71 3 3 chr9 41168083 41168365 -76694262 - AluY SINE Alu -14 297 16 1911 133 32 39 chr9 41168365 41168615 -76694012 + AluJb SINE Alu 59 308 -4 2036 126 0 43 chr9 41169178 41169504 -76693123 + AluSq SINE Alu 1 312 -1 221 258 194 24 chr9 41170773 41170897 -76691730 - MIR3 SINE MIR -61 147 3 2069 138 3 7 chr9 41170897 41171201 -76691426 - AluSx SINE Alu -9 303 1 313 211 26 0 chr9 41171868 41171944 -76690683 + L1ME4a LINE L1 5750 5827 -1981 608 180 7 65 chr9 41172087 41172226 -76690401 + FLAM_C SINE Alu 1 131 -2 3590 159 22 112 chr9 41172228 41172328 -76690299 + L1MB7 LINE L1 5217 5324 -860 1909 149 20 10 chr9 41172328 41172629 -76689998 - AluJb SINE Alu -6 306 3 3590 159 22 112 chr9 41172629 41172650 -76689977 + L1MB7 LINE L1 5324 5345 -839 591 80 0 116 chr9 41172650 41172728 -76689899 - HY3 scRNA scRNA -2 99 36 2292 103 0 3 chr9 41172728 41173020 -76689607 + AluSx SINE Alu 1 291 -21 591 80 0 116 chr9 41173020 41173053 -76689574 - HY3 scRNA scRNA -65 36 1 3590 159 22 112 chr9 41173053 41173332 -76689295 + L1MB7 LINE L1 5345 5648 -536 1869 157 26 3 chr9 41173332 41173637 -76688990 - AluJb SINE Alu 0 312 1 3590 159 22 112 chr9 41173637 41173665 -76688962 + L1MB7 LINE L1 5648 5677 -507 2090 136 14 0 chr9 41173665 41173960 -76688667 + AluSx SINE Alu 1 299 -13 3590 159 22 112 chr9 41173960 41174200 -76688427 + L1MB7 LINE L1 5677 5937 -247 2310 98 0 0 chr9 41174200 41174487 -76688140 + AluSx SINE Alu 11 297 -15 3590 159 22 112 chr9 41174487 41174775 -76687852 + L1MB7 LINE L1 5937 6106 -78 2070 128 0 10 chr9 41174775 41175063 -76687564 - AluJb SINE Alu -14 298 14 3590 159 22 112 chr9 41175063 41175121 -76687506 + L1MB7 LINE L1 6106 6168 -16 387 248 223 6 chr9 41175129 41175286 -76687341 + L1ME4a LINE L1 5928 6118 -3 2294 116 0 0 chr9 41175289 41175590 -76687037 + AluSx SINE Alu 6 306 -6 2286 94 9 31 chr9 41175592 41175911 -76686716 + AluSp SINE Alu 1 312 -1 1713 168 0 21 chr9 41175915 41176201 -76686426 + AluJo SINE Alu 1 280 -32 198 0 0 0 chr9 41176208 41176230 -76686397 + (CAAA)n Simple_repeat Simple_repeat 4 25 0 2648 53 0 0 chr9 41176616 41176918 -76685709 - AluY SINE Alu -9 302 1 2293 114 10 0 chr9 41177017 41177324 -76685303 + AluSx SINE Alu 1 310 -2 5080 183 30 14 chr9 41277521 41279311 -76583316 - L1PB3 LINE L1 -61 6093 4280 282 29 0 0 chr9 41279488 41279523 -76583104 + (TG)n Simple_repeat Simple_repeat 2 36 0 222 220 17 0 chr9 41279523 41279582 -76583045 + CT-rich Low_complexity Low_complexity 2 61 0 1765 254 64 75 chr9 41279583 41280896 -76581731 + SST1 Satellite centromeric 262 1560 -3 423 0 0 0 chr9 41280902 41280949 -76581678 + (TG)n Simple_repeat Simple_repeat 2 48 0 240 220 17 0 chr9 41280949 41281008 -76581619 + CT-rich Low_complexity Low_complexity 2 61 0 1206 279 36 51 chr9 41281747 41282656 -76579971 - SST1 Satellite centromeric -13 895 1 402 74 0 0 chr9 41282775 41282829 -76579798 + (TTCA)n Simple_repeat Simple_repeat 4 57 0 1092 155 0 4 chr9 41284633 41285354 -76577273 + (TGAG)n Simple_repeat Simple_repeat 1 717 0 267 276 117 47 chr9 41285558 41285772 -76576855 + MIR SINE MIR 10 238 -24 187 263 111 51 chr9 41285877 41286094 -76576533 + L2 LINE L2 2836 3065 -248 270 293 75 38 chr9 41287036 41287142 -76575485 + L2 LINE L2 3162 3271 -1 597 197 104 67 chr9 41287576 41287769 -76574858 - MER63A DNA MER1_type -10 200 1 320 324 6 22 chr9 41287916 41288098 -76574529 + (CA)n Simple_repeat Simple_repeat 2 180 0 28 0 0 0 chr9 41288363 41288391 -76574236 + AT_rich Low_complexity Low_complexity 1 28 0 1118 231 47 27 chr9 41288490 41288789 -76573838 - LTR68 LTR ERV1 -127 613 309 291 159 48 16 chr9 41288976 41289039 -76573588 - LTR68 LTR ERV1 -653 87 23 550 221 0 0 chr9 41289039 41289143 -76573484 + FRAM SINE Alu 63 166 -10 22 80 0 0 chr9 41289569 41289619 -76573008 + AT_rich Low_complexity Low_complexity 1 50 0 2676 158 5 2 chr9 41290347 41290747 -76571880 + MER61D LTR ERV1 1 401 -100 1013 175 64 126 chr9 41290747 41291252 -76571375 + HUERS-P3b LTR ERV1 195 886 -2600 * 11205 186 38 54 chr9 41291251 41291879 -76570748 + HUERS-P3b LTR ERV1 609 1246 -5750 2414 64 3 49 chr9 41291879 41292205 -76570422 + AluY SINE Alu 1 311 0 11205 186 38 54 chr9 41292205 41293656 -76568971 + HUERS-P3b LTR ERV1 1246 2719 -4277 2212 142 27 33 chr9 41293656 41294022 -76568605 + THE1B LTR MaLR 1 364 0 11205 186 38 54 chr9 41294022 41296483 -76566144 + HUERS-P3b LTR ERV1 2719 6724 -272 180 0 0 0 chr9 41296483 41296503 -76566124 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 11205 186 38 54 chr9 41296503 41296771 -76565856 + HUERS-P3b LTR ERV1 6724 6995 -1 2860 169 34 28 chr9 41296772 41297091 -76565536 + MER61D LTR ERV1 1 326 -175 1974 134 3 7 chr9 41297091 41297382 -76565245 + AluSg SINE Alu 2 291 -19 2860 169 34 28 chr9 41297382 41297559 -76565068 + MER61D LTR ERV1 326 500 -1 914 195 19 123 chr9 41297936 41298244 -76564383 + MER93b LTR ERV1 98 373 0 1924 169 55 19 chr9 41298244 41298481 -76564146 + MER1B DNA MER1_type 1 255 -2457 2075 230 35 62 chr9 41298481 41299050 -76563577 - MLT2B3 LTR ERVL 0 554 1 1924 169 55 19 chr9 41299050 41299137 -76563490 + MER1B DNA MER1_type 255 337 -2 25 0 0 0 chr9 41299858 41299883 -76562744 + AT_rich Low_complexity Low_complexity 1 25 0 2731 198 23 45 chr9 41300842 41301462 -76561165 - L1MA6 LINE L1 -1 6299 5694 363 71 14 29 chr9 41301951 41302021 -76560606 + (TA)n Simple_repeat Simple_repeat 2 70 0 1628 203 3 3 chr9 41302060 41302366 -76560261 + AluJb SINE Alu 1 306 -6 507 292 40 32 chr9 41302850 41303127 -76559500 + L1ME3 LINE L1 5884 6162 0 25 65 0 0 chr9 41303174 41303220 -76559407 + AT_rich Low_complexity Low_complexity 1 46 0 349 297 115 33 chr9 41303684 41303866 -76558761 - MLT1J LTR MaLR -279 232 36 231 305 147 46 chr9 41305587 41305872 -76556755 - MLT1J2 LTR MaLR 0 450 137 4236 167 75 42 chr9 41306638 41307512 -76555115 - MER4D LTR ERV1 0 903 1 807 304 47 23 chr9 41307519 41307861 -76554766 + LTR16B LTR ERVL 109 458 -6 2660 152 39 0 chr9 41308163 41308577 -76554050 + MER57B LTR ERV1 1 430 -4 223 333 28 0 chr9 41308873 41308945 -76553682 + L2 LINE L2 3193 3266 -47 221 258 0 0 chr9 41310305 41310367 -76552260 + A-rich Low_complexity Low_complexity 1 62 0 1036 251 78 49 chr9 41310667 41311078 -76551549 - L1MC4 LINE L1 -321 7721 7299 1065 264 31 36 chr9 41311141 41311557 -76551070 - L1MC4 LINE L1 -733 7309 6896 561 295 94 22 chr9 41311558 41311877 -76550750 - L1M4 LINE L1 -1768 4378 4037 382 285 19 19 chr9 41311887 41312143 -76550484 + L1MEc LINE L1 2034 2289 -4107 247 322 123 15 chr9 41312252 41312513 -76550114 + L1MEc LINE L1 93 381 -6015 1935 152 66 20 chr9 41312516 41312864 -76549763 + THE1B LTR MaLR 1 364 0 2028 170 11 16 chr9 41313130 41313507 -76549120 + THE1C LTR MaLR 1 375 0 1210 273 84 43 chr9 41313900 41315130 -76547497 - L1M4 LINE L1 -2598 3548 2269 30 27 0 0 chr9 41315156 41315193 -76547434 + AT_rich Low_complexity Low_complexity 1 37 0 527 262 20 15 chr9 41315195 41315397 -76547230 - L1MEc LINE L1 -1488 4727 4525 334 285 66 15 chr9 41315476 41315613 -76547014 - L1MEc LINE L1 -2115 4100 3957 14491 30 0 0 chr9 41315619 41318070 -76544557 + L1PA3 LINE L1 3705 6155 0 703 264 76 28 chr9 41318086 41318650 -76543977 - L1MEc LINE L1 -2435 3780 3190 25 0 0 0 chr9 41318711 41318736 -76543891 + AT_rich Low_complexity Low_complexity 1 25 0 1034 230 59 67 chr9 41318737 41319097 -76543530 - MLT1A1 LTR MaLR -47 332 1 513 204 91 8 chr9 41319208 41319340 -76543287 - L1MA3 LINE L1 0 6305 6163 389 248 96 99 chr9 41319357 41319910 -76542717 - L1MEc LINE L1 -3720 2501 1985 379 279 22 89 chr9 41320034 41320213 -76542414 + MER96 DNA MER1_type? 1 167 -8 * 392 247 27 96 chr9 41320074 41320220 -76542407 - MER96 DNA MER1_type? -38 137 2 23 0 0 0 chr9 41320306 41320329 -76542298 + AT_rich Low_complexity Low_complexity 1 23 0 315 229 36 84 chr9 41320330 41320496 -76542131 - HAL1 LINE L1 -961 1546 1389 529 300 52 17 chr9 41320610 41320916 -76541711 - L1MEc LINE L1 -4982 1223 933 758 329 26 23 chr9 41320957 41321346 -76541281 - L1MEc LINE L1 -5596 800 411 563 193 122 9 chr9 41321382 41321624 -76541003 - MLT1A1 LTR MaLR 0 390 1 1369 198 63 30 chr9 41321971 41322304 -76540323 + MER2 DNA MER2_type 1 344 0 1000 271 80 6 chr9 41323912 41324251 -76538376 - MLT1A1 LTR MaLR -1 364 1 25 0 0 0 chr9 41324628 41324653 -76537974 + AT_rich Low_complexity Low_complexity 1 25 0 2475 73 0 16 chr9 41325924 41326240 -76536387 - AluY SINE Alu 0 311 1 4480 78 23 0 chr9 41326518 41327117 -76535510 + L1PA7 LINE L1 5506 6118 -36 1734 59 18 0 chr9 41327117 41327332 -76535295 + L1PA8 LINE L1 5948 6172 0 254 335 71 37 chr9 41327350 41327675 -76534952 + L1MEd LINE L1 586 921 -5284 200 339 79 6 chr9 41328052 41328217 -76534410 + L2 LINE L2 3083 3259 -54 379 341 76 22 chr9 41328299 41328666 -76533961 + L1MEd LINE L1 1436 1822 -4574 1288 246 48 132 chr9 41328716 41329367 -76533260 - MER77 LTR ERV1 -6 599 4 1448 261 48 52 chr9 41330776 41331444 -76531183 + L1M4 LINE L1 3573 4237 -1909 282 283 33 0 chr9 41331458 41331550 -76531077 + GA-rich Low_complexity Low_complexity 6 100 0 211 205 0 0 chr9 41331845 41331884 -76530743 + (CA)n Simple_repeat Simple_repeat 2 40 0 421 246 18 42 chr9 41331889 41332056 -76530571 - L1M4 LINE L1 -2383 3763 3601 * 3694 45 0 0 chr9 41332043 41332490 -76530137 - L1P LINE L1 -2143 4003 3557 6815 18 0 0 chr9 41332490 41333253 -76529374 + L1PA2 LINE L1 5389 6151 -4 654 265 106 45 chr9 41333288 41333584 -76529043 - L1M4 LINE L1 -2519 3627 3350 2130 136 0 0 chr9 41333584 41333892 -76528735 - AluSx SINE Alu -4 308 1 654 265 106 45 chr9 41333892 41334236 -76528391 - L1M4 LINE L1 -2796 3350 2948 50 31 0 0 chr9 41334620 41334684 -76527943 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr9 41335323 41335355 -76527272 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr9 41335705 41335741 -76526886 + AT_rich Low_complexity Low_complexity 1 36 0 834 295 65 14 chr9 41336284 41336445 -76526182 - SST1 Satellite centromeric -1129 434 283 342 0 0 0 chr9 41336445 41336483 -76526144 + (CCCCAG)n Simple_repeat Simple_repeat 2 39 0 834 295 65 14 chr9 41336483 41336734 -76525893 - SST1 Satellite centromeric -1280 283 1 233 226 16 0 chr9 41337470 41337532 -76525095 + GA-rich Low_complexity Low_complexity 1 63 0 210 91 0 0 chr9 41337532 41337565 -76525062 + (CA)n Simple_repeat Simple_repeat 2 34 0 716 279 61 44 chr9 41337591 41338065 -76524562 - SST1 Satellite centromeric -14 1549 1068 26 74 0 0 chr9 41338578 41338632 -76523995 + AT_rich Low_complexity Low_complexity 1 54 0 393 22 0 0 chr9 41341677 41341723 -76520904 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 57 0 0 chr9 41342746 41342781 -76519846 + AT_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr9 41342873 41342904 -76519723 + (CA)n Simple_repeat Simple_repeat 1 31 0 225 207 0 35 chr9 41344373 41344431 -76518196 + G-rich Low_complexity Low_complexity 3 58 0 902 200 0 0 chr9 41345069 41345224 -76517403 - FRAM SINE Alu -11 165 11 333 0 0 0 chr9 41345586 41345623 -76517004 + (GA)n Simple_repeat Simple_repeat 2 38 0 254 194 16 0 chr9 41347935 41347997 -76514630 + GA-rich Low_complexity Low_complexity 2 64 0 1023 243 100 12 chr9 41348241 41348661 -76513966 - MLT1C LTR MaLR -10 457 1 2077 223 55 12 chr9 41351968 41352546 -76510081 - LTR26 LTR ERV1 0 603 1 222 301 23 38 chr9 41353734 41353867 -76508760 + (CCCA)n Simple_repeat Simple_repeat 2 132 0 204 313 27 9 chr9 41354052 41354164 -76508463 + (TCTA)n Simple_repeat Simple_repeat 2 115 0 * 436 291 11 22 chr9 41354104 41354283 -76508344 + (TCCA)n Simple_repeat Simple_repeat 2 178 0 412 289 176 17 chr9 41354367 41354724 -76507903 - L2 LINE L2 0 3313 2900 187 357 30 30 chr9 41355317 41355485 -76507142 + MIR SINE MIR 23 190 -72 511 306 122 6 chr9 41355526 41356033 -76506594 + MER92B LTR ERV1 4 569 -67 1759 135 29 22 chr9 41356447 41356789 -76505838 - MER4A LTR ERV1 0 664 262 616 117 43 0 chr9 41356790 41356884 -76505743 - MER4A LTR ERV1 -566 98 1 1230 153 23 23 chr9 41357574 41357790 -76504837 + AluJo SINE Alu 85 300 -12 227 59 0 0 chr9 41357799 41357833 -76504794 - Tigger2 DNA MER2_type -235 2483 2450 203 279 0 64 chr9 41358537 41358677 -76503950 + CT-rich Low_complexity Low_complexity 3 133 0 216 296 0 69 chr9 41359108 41359297 -76503330 + C-rich Low_complexity Low_complexity 2 177 0 29 0 0 0 chr9 41360177 41360206 -76502421 + AT_rich Low_complexity Low_complexity 1 29 0 410 293 86 0 chr9 41360576 41360716 -76501911 - MIR SINE MIR -106 156 5 373 291 182 0 chr9 41360717 41360882 -76501745 - MIR SINE MIR -3 259 65 941 248 146 34 chr9 41360995 41361357 -76501270 + L1ME LINE L1 4755 5075 -1089 1505 192 0 11 chr9 41361357 41361643 -76500984 + AluJb SINE Alu 30 312 0 941 248 146 34 chr9 41361643 41362011 -76500616 + L1ME LINE L1 5075 5566 -598 460 208 0 9 chr9 41362026 41362132 -76500495 - MLT1C LTR MaLR -329 138 34 1435 140 163 23 chr9 41362148 41362405 -76500222 - AluJo SINE Alu -9 293 1 3786 98 45 63 chr9 41362819 41363465 -76499162 + MER51A LTR ERV1 1 634 0 729 238 6 98 chr9 41363542 41363857 -76498770 + MLT1A2 LTR MaLR 4 289 -85 394 259 9 0 chr9 41363857 41363973 -76498654 + MLT1A2 LTR MaLR 258 374 0 2434 107 59 0 chr9 41364691 41365045 -76497582 + THE1C LTR MaLR 1 375 0 1363 200 13 13 chr9 41365613 41365918 -76496709 - LOR1a LTR ERV1 -5 492 188 293 253 27 0 chr9 41365921 41365996 -76496631 + G-rich Low_complexity Low_complexity 3 79 0 290 210 37 25 chr9 41366136 41366217 -76496410 + GA-rich Low_complexity Low_complexity 4 85 0 574 166 17 39 chr9 41366237 41366418 -76496209 + GA-rich Low_complexity Low_complexity 4 180 0 289 113 0 48 chr9 41366422 41366484 -76496143 + (GGGA)n Simple_repeat Simple_repeat 1 59 0 253 116 87 0 chr9 41366988 41367057 -76495570 + (CA)n Simple_repeat Simple_repeat 2 76 0 561 166 29 23 chr9 41367161 41367336 -76495291 + (TGGA)n Simple_repeat Simple_repeat 3 178 0 934 110 29 0 chr9 41367365 41367538 -76495089 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 696 137 22 44 chr9 41367549 41367732 -76494895 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 550 160 15 0 chr9 41367748 41367879 -76494748 + (TGGA)n Simple_repeat Simple_repeat 3 135 0 22 0 0 0 chr9 41368818 41368840 -76493787 + AT_rich Low_complexity Low_complexity 1 22 0 1751 149 0 4 chr9 41368924 41369214 -76493413 + AluSx SINE Alu 35 312 0 22 35 0 0 chr9 41370195 41370224 -76492403 + AT_rich Low_complexity Low_complexity 1 29 0 2571 133 24 5 chr9 41371313 41371733 -76490894 + MSTA LTR MaLR 1 428 0 7168 195 66 9 chr9 41371733 41373289 -76489338 + MSTA-int LTR MaLR 1 1645 -6 2396 155 21 16 chr9 41373294 41373720 -76488907 + MSTA LTR MaLR 1 428 0 1728 184 33 0 chr9 41373951 41374250 -76488377 + 7SLRNA srpRNA srpRNA 10 318 -2 22 0 0 0 chr9 41374349 41374371 -76488256 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr9 41374526 41374562 -76488065 + AT_rich Low_complexity Low_complexity 1 36 0 207 114 0 0 chr9 41375041 41375076 -76487551 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 41375966 41375987 -76486640 + AT_rich Low_complexity Low_complexity 1 21 0 216 214 0 0 chr9 41376053 41376095 -76486532 + A-rich Low_complexity Low_complexity 1 42 0 30 69 0 0 chr9 41376495 41376553 -76486074 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr9 41376930 41376953 -76485674 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 41377870 41377896 -76484731 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr9 41378147 41378177 -76484450 + AT_rich Low_complexity Low_complexity 1 30 0 1925 148 3 16 chr9 41378223 41378528 -76484099 - AluSg SINE Alu -9 301 1 1616 219 106 9 chr9 41378671 41379096 -76483531 - MER31B LTR ERV1 0 466 1 677 333 124 16 chr9 41381160 41381602 -76481025 + L2 LINE L2 2472 2961 -353 245 286 40 91 chr9 41381710 41381909 -76480718 + L2 LINE L2 3119 3307 -6 418 321 102 43 chr9 41382109 41382598 -76480029 - LTR33A LTR ERVL -4 519 2 2262 73 0 0 chr9 41382662 41382936 -76479691 + AluY SINE Alu 14 287 -24 226 283 0 0 chr9 41383259 41383312 -76479315 + L2 LINE L2 3211 3263 -9 282 359 19 0 chr9 41384582 41384688 -76477939 - L2 LINE L2 -4 3268 3161 23 33 0 0 chr9 41385284 41385314 -76477313 + AT_rich Low_complexity Low_complexity 1 30 0 13106 158 22 6 chr9 41385643 41387675 -76474952 + Tigger1 DNA MER2_type 24 2100 -318 2058 130 10 0 chr9 41387675 41387974 -76474653 + AluSx SINE Alu 7 308 -4 13106 158 22 6 chr9 41387974 41388298 -76474329 + Tigger1 DNA MER2_type 2100 2417 -1 23 33 0 0 chr9 41388578 41388608 -76474019 + AT_rich Low_complexity Low_complexity 1 30 0 743 242 121 14 chr9 41388969 41389184 -76473443 - MER8 DNA MER2_type 0 239 2 2392 17 104 0 chr9 41390034 41390322 -76472305 + AluYb8 SINE Alu 1 318 0 30 0 0 0 chr9 41390848 41390878 -76471749 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr9 41391145 41391184 -76471443 + AT_rich Low_complexity Low_complexity 1 39 0 1081 83 0 0 chr9 41391276 41391421 -76471206 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr9 41391589 41391628 -76470999 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr9 41391686 41391729 -76470898 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr9 41391746 41391771 -76470856 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 41391814 41391843 -76470784 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr9 41391882 41391926 -76470701 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr9 41391959 41391994 -76470633 + AT_rich Low_complexity Low_complexity 1 35 0 2151 123 0 26 chr9 41392024 41392334 -76470293 - AluY SINE Alu -9 302 1 662 229 51 6 chr9 41392459 41392616 -76470011 + MLT1A2 LTR MaLR 157 320 -54 1221 311 37 67 chr9 41392624 41393878 -76468749 + L1PA12 LINE L1 8 1762 -5819 1986 165 25 25 chr9 41393878 41394242 -76468385 + THE1B LTR MaLR 1 364 0 10813 107 5 2 chr9 41394242 41395812 -76466815 + THE1B-int LTR MaLR 1 1575 -5 1953 179 16 28 chr9 41395817 41396181 -76466446 + THE1B LTR MaLR 1 360 -4 6591 266 17 11 chr9 41396185 41397937 -76464690 + L1PA12 LINE L1 1539 3279 -4305 1857 118 93 21 chr9 41397937 41398226 -76464401 + AluY SINE Alu 1 310 -1 6591 266 17 11 chr9 41398226 41400485 -76462142 + L1PA12 LINE L1 3279 5251 -2333 1981 210 47 0 chr9 41400516 41401001 -76461626 - L1 LINE L1 -1097 5049 4542 5036 142 2 6 chr9 41401002 41401800 -76460827 + THE1C-int LTR MaLR 786 1580 0 1930 165 32 19 chr9 41401800 41402170 -76460457 + THE1C LTR MaLR 1 375 0 2391 288 31 41 chr9 41402181 41402337 -76460290 - L1PA13 LINE L1 -4712 2075 1919 1828 142 24 27 chr9 41402337 41402350 -76460277 - AluSx SINE Alu -17 295 283 414 0 0 0 chr9 41402350 41402396 -76460231 + (TG)n Simple_repeat Simple_repeat 1 46 0 1828 142 24 27 chr9 41402396 41402677 -76459950 - AluSx SINE Alu -29 283 2 2391 288 31 41 chr9 41402677 41404219 -76458408 - L1PA13 LINE L1 -4868 1919 1 638 328 70 36 chr9 41404454 41405186 -76457441 - L1MEd LINE L1 -4864 1255 590 1868 138 0 0 chr9 41405566 41405826 -76456801 - AluSg SINE Alu -16 294 35 28 29 0 0 chr9 41405878 41405913 -76456714 + AT_rich Low_complexity Low_complexity 1 35 0 240 192 128 0 chr9 41406370 41406448 -76456179 - Charlie2a DNA MER1_type -1231 1631 1544 1279 298 90 14 chr9 41406562 41407505 -76455122 - Charlie2a DNA MER1_type -1448 1414 400 1069 270 86 55 chr9 41407637 41408277 -76454350 + L1ME2 LINE L1 134 793 -5603 1117 269 57 35 chr9 41408333 41408879 -76453748 + L1ME2 LINE L1 5549 6106 -127 1190 261 71 48 chr9 41409034 41409612 -76453015 + L1ME2 LINE L1 5558 6148 -16 27 96 0 0 chr9 41410344 41410427 -76452200 + AT_rich Low_complexity Low_complexity 1 83 0 331 250 0 0 chr9 41410710 41410766 -76451861 + L1PA13 LINE L1 762 817 -5970 769 349 76 8 chr9 41410783 41411138 -76451489 + L1PA13 LINE L1 877 1255 -5532 1150 264 38 106 chr9 41411212 41411852 -76450775 - LTR4 LTR ERV1 0 596 1 1418 220 82 14 chr9 41411865 41412308 -76450319 + LTR22 LTR ERVK 16 458 0 4331 175 22 35 chr9 41412310 41413248 -76449379 + L1PA13 LINE L1 1441 2380 -4417 2029 145 33 36 chr9 41413248 41413613 -76449014 - THE1B LTR MaLR 0 364 1 7426 132 16 5 chr9 41413613 41414722 -76447905 - THE1B-int LTR MaLR 0 1580 460 46 61 0 26 chr9 41414722 41414836 -76447791 + AT_rich Low_complexity Low_complexity 1 111 0 912 259 31 31 chr9 41415529 41415823 -76446804 - MER58B DNA MER1_type -12 329 36 4302 154 71 28 chr9 41416302 41416899 -76445728 - Tigger3b DNA MER2_type -1797 1231 584 7743 26 2 1 chr9 41416899 41418243 -76444384 + L1PA3 LINE L1 4801 6152 -3 4302 154 71 28 chr9 41418243 41418508 -76444119 - Tigger3b DNA MER2_type -2444 584 332 457 198 10 31 chr9 41418529 41418625 -76444002 - Tigger3b DNA MER2_type -1137 94 1 1830 127 20 23 chr9 41418701 41419001 -76443626 - AluSx SINE Alu -13 299 1 2401 231 35 69 chr9 41419088 41419772 -76442855 - MER76 LTR ERV -27 661 1 2267 58 41 0 chr9 41421988 41422281 -76440346 + AluY SINE Alu 1 305 -6 2215 70 0 7 chr9 41422526 41422864 -76439763 + AluY SINE Alu 1 336 0 1267 194 104 18 chr9 41422951 41423229 -76439398 + AluJo SINE Alu 1 302 0 23 0 0 0 chr9 41423312 41423335 -76439292 + AT_rich Low_complexity Low_complexity 1 23 0 1722 305 155 23 chr9 41423670 41424412 -76438215 + L1MD2 LINE L1 9 848 -5561 2324 229 4 13 chr9 41424412 41424657 -76437970 + MER70A LTR ERVL 1 242 -230 2181 86 17 10 chr9 41424657 41424959 -76437668 + AluSq SINE Alu 1 304 -9 2324 229 4 13 chr9 41424959 41425189 -76437438 + MER70A LTR ERVL 242 472 0 4995 199 83 6 chr9 41425198 41426189 -76436438 + MER70A-int LTR ERVL 10 1076 -3947 493 179 12 0 chr9 41426208 41426292 -76436335 + MER70A-int LTR ERVL 2300 2384 -2639 1957 110 35 22 chr9 41426292 41426686 -76435941 - LTR7 LTR ERV1 0 450 1 2918 95 7 11 chr9 41426686 41427119 -76435508 - HERVH LTR ERV1 0 7713 7283 7199 138 6 7 chr9 41427138 41428631 -76433996 - HERVH LTR ERV1 -2287 4242 3582 708 120 0 34 chr9 41428633 41428750 -76433877 - HERVH LTR ERV1 -4988 2725 2613 2041 115 26 9 chr9 41428757 41429148 -76433479 - LTR7 LTR ERV1 0 450 1 13990 187 38 14 chr9 41429148 41431298 -76431329 + MER70A-int LTR ERVL 2380 4604 -419 1872 127 3 27 chr9 41431298 41431597 -76431030 - AluSp SINE Alu -21 292 1 13990 187 38 14 chr9 41431597 41432027 -76430600 + MER70A-int LTR ERVL 4604 5022 -1 2089 222 4 68 chr9 41432035 41432539 -76430088 + MER70A LTR ERVL 1 472 0 2145 237 20 28 chr9 41432540 41433283 -76429344 + L1MD2 LINE L1 845 1585 -4821 1101 222 42 114 chr9 41433291 41433792 -76428835 - MLT1D LTR MaLR -40 465 1 227 408 90 8 chr9 41434030 41434275 -76428352 + L3 LINE CR1 116 380 -1197 3674 154 32 50 chr9 41434297 41435082 -76427545 - L1MA5 LINE L1 0 6300 5530 791 181 0 0 chr9 41435094 41435249 -76427378 - L1MA5 LINE L1 -1120 5026 4872 1041 243 92 64 chr9 41435251 41436297 -76426330 + L1MD2 LINE L1 1571 2644 -3762 491 277 43 56 chr9 41436695 41436911 -76425716 + MER61D LTR ERV1 338 1237 -10 1925 241 43 53 chr9 41436911 41437141 -76425486 + L1MD2 LINE L1 2667 2898 -3508 273 109 0 0 chr9 41437141 41437187 -76425440 + (CA)n Simple_repeat Simple_repeat 1 46 0 1925 241 43 53 chr9 41437187 41437836 -76424791 + L1MD2 LINE L1 2898 3537 -2869 1145 218 23 32 chr9 41437813 41438161 -76424466 + L1MD2 LINE L1 5523 5867 -635 * 297 189 0 78 chr9 41438161 41438251 -76424376 - L1MA1 LINE L1 -233 6069 5987 30 45 0 0 chr9 41438269 41438313 -76424314 + AT_rich Low_complexity Low_complexity 1 44 0 789 254 78 32 chr9 41438313 41438596 -76424031 + L1MD2 LINE L1 5855 6150 -469 1322 230 78 78 chr9 41438640 41439452 -76423175 + SST1 Satellite centromeric 751 1562 -1 489 58 0 0 chr9 41439456 41439525 -76423102 + (TG)n Simple_repeat Simple_repeat 2 70 0 239 173 19 0 chr9 41439532 41439584 -76423043 + CT-rich Low_complexity Low_complexity 2 54 0 2690 257 75 55 chr9 41440323 41440574 -76422053 + SST1 Satellite centromeric 1 245 -1318 309 26 0 0 chr9 41440574 41440612 -76422015 + (CTGGGG)n Simple_repeat Simple_repeat 2 39 0 2690 257 75 55 chr9 41440612 41441891 -76420736 + SST1 Satellite centromeric 245 1562 -1 204 40 0 0 chr9 41441895 41441920 -76420707 + (TG)n Simple_repeat Simple_repeat 2 26 0 222 220 17 0 chr9 41441920 41441979 -76420648 + CT-rich Low_complexity Low_complexity 2 61 0 2034 269 57 65 chr9 41441980 41443291 -76419336 + SST1 Satellite centromeric 262 1562 -1 186 43 0 0 chr9 41443295 41443318 -76419309 + (TG)n Simple_repeat Simple_repeat 2 24 0 240 220 17 0 chr9 41443318 41443377 -76419250 + CT-rich Low_complexity Low_complexity 2 61 0 2897 274 52 54 chr9 41444109 41446117 -76416510 - SST1 Satellite centromeric -13 2298 250 363 23 0 0 chr9 41446117 41446161 -76416466 + (CCCCAG)n Simple_repeat Simple_repeat 2 45 0 2897 274 52 54 chr9 41446161 41446411 -76416216 - SST1 Satellite centromeric -2061 250 1 249 210 16 0 chr9 41447144 41447206 -76415421 + GA-rich Low_complexity Low_complexity 1 63 0 261 57 0 0 chr9 41447206 41447241 -76415386 + (CA)n Simple_repeat Simple_repeat 2 36 0 817 262 67 52 chr9 41447267 41447744 -76414883 - SST1 Satellite centromeric -14 1549 1066 26 74 0 0 chr9 41448254 41448308 -76414319 + AT_rich Low_complexity Low_complexity 1 54 0 181 167 24 24 chr9 41448851 41448893 -76413734 - L2 LINE L2 -85 3187 3146 318 26 0 0 chr9 41449056 41449095 -76413532 + (CA)n Simple_repeat Simple_repeat 2 40 0 330 87 0 0 chr9 41451363 41451409 -76411218 + (TG)n Simple_repeat Simple_repeat 1 46 0 21 57 0 0 chr9 41452435 41452470 -76410157 + AT_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr9 41452558 41452589 -76410038 + (CA)n Simple_repeat Simple_repeat 1 31 0 288 137 0 0 chr9 41454124 41454175 -76408452 + (CGGGGG)n Simple_repeat Simple_repeat 2 52 0 913 201 0 0 chr9 41454807 41454971 -76407656 - FRAM SINE Alu -2 164 1 207 69 0 0 chr9 41455323 41455352 -76407275 + (GA)n Simple_repeat Simple_repeat 2 30 0 495 270 190 6 chr9 41458069 41458232 -76404395 + MIR SINE MIR 2 194 -68 658 172 0 39 chr9 41458443 41458485 -76404142 - MER5B DNA MER1_type -1 177 135 2037 123 3 3 chr9 41458485 41458795 -76403832 - AluSq SINE Alu -3 310 1 658 172 0 39 chr9 41458795 41458880 -76403747 - MER5B DNA MER1_type -43 135 55 3324 33 7 7 chr9 41458880 41459379 -76403248 - L1PA2 LINE L1 -1 6154 5657 1806 24 0 0 chr9 41459251 41459459 -76403168 + L1P1 LINE L1 5593 5800 -355 301 42 62 21 chr9 41459461 41459509 -76403118 - MER5B DNA MER1_type -121 57 8 432 290 48 41 chr9 41460326 41460471 -76402156 + MIR SINE MIR 27 172 -90 375 297 43 65 chr9 41460629 41460814 -76401813 - MIR SINE MIR -61 201 21 * 929 235 32 44 chr9 41460758 41460827 -76401800 + MIR SINE MIR 13 81 -181 1957 138 2 121 chr9 41460827 41461241 -76401386 - MER47A DNA MER2_type -1 365 1 929 235 32 44 chr9 41461241 41461422 -76401205 + MIR SINE MIR 81 260 -2 208 338 23 8 chr9 41462279 41462378 -76400249 - MIR SINE MIR -65 143 44 427 304 19 0 chr9 41463108 41463266 -76399361 - MIR3 SINE MIR 0 208 48 302 250 180 0 chr9 41463267 41463367 -76399260 - L2 LINE L2 -2 3270 3153 436 231 11 0 chr9 41464997 41465088 -76397539 - MIR SINE MIR -115 147 56 209 108 27 0 chr9 41465111 41465148 -76397479 + GA-rich Low_complexity Low_complexity 3 40 0 215 303 64 37 chr9 41465342 41465451 -76397176 + MIR3 SINE MIR 11 122 -86 237 280 16 123 chr9 41466169 41466412 -76396215 - L3b LINE CR1 -189 1394 1178 1420 252 113 21 chr9 41466766 41467309 -76395318 - L2 LINE L2 -18 3295 2696 2163 130 0 0 chr9 41467309 41467601 -76395026 - AluSg SINE Alu -18 292 1 1420 252 113 21 chr9 41467601 41467778 -76394849 - L2 LINE L2 -617 2696 2537 190 175 18 105 chr9 41470117 41470174 -76392453 - MIR3 SINE MIR 0 208 157 2217 116 0 7 chr9 41470360 41470662 -76391965 - AluY SINE Alu -11 300 1 679 273 60 0 chr9 41470844 41471027 -76391600 - MIR SINE MIR -10 252 59 206 321 18 0 chr9 41471124 41471180 -76391447 - MIR SINE MIR -115 93 37 794 81 9 0 chr9 41471217 41471328 -76391299 - HY1 scRNA scRNA 0 112 1 349 213 18 29 chr9 41471437 41471598 -76391029 + MIR SINE MIR 29 260 -2 25 31 0 0 chr9 41471957 41471989 -76390638 + AT_rich Low_complexity Low_complexity 1 32 0 23 86 0 0 chr9 41472665 41472723 -76389904 + AT_rich Low_complexity Low_complexity 1 58 0 193 293 120 60 chr9 41474244 41474394 -76388233 + L2 LINE L2 2353 2511 -803 * 344 239 109 0 chr9 41474385 41474477 -76388150 - L2 LINE L2 -10 3303 3202 472 152 0 0 chr9 41474968 41475034 -76387593 + AluJ/FLAM SINE Alu 9 74 -238 250 118 0 59 chr9 41475068 41475119 -76387508 + Alu SINE Alu 251 298 -4 841 178 0 0 chr9 41475123 41475258 -76387369 + AluJb SINE Alu 167 301 -11 2115 123 0 3 chr9 41475263 41475555 -76387072 + AluSx SINE Alu 21 311 -1 210 278 155 0 chr9 41475725 41475822 -76386805 + L2 LINE L2 2910 3021 -251 589 221 83 33 chr9 41476468 41476649 -76385978 + L2 LINE L2 3122 3311 -2 505 261 54 8 chr9 41476666 41476796 -76385831 + L2 LINE L2 3137 3272 0 1901 166 3 16 chr9 41477211 41477519 -76385108 + AluJb SINE Alu 1 304 -8 403 327 51 0 chr9 41479912 41480068 -76382559 + L2 LINE L2 3101 3264 -8 370 0 40 0 chr9 41480352 41480402 -76382225 + (CA)n Simple_repeat Simple_repeat 2 53 0 329 283 21 84 chr9 41480750 41480877 -76381750 - MIR3 SINE MIR -6 202 83 2094 137 3 3 chr9 41480877 41481177 -76381450 + AluSx SINE Alu 1 300 -12 329 283 21 84 chr9 41481177 41481216 -76381411 - MIR3 SINE MIR -125 83 43 252 271 0 0 chr9 41481208 41481256 -76381371 - MIR SINE MIR -124 84 37 * 1720 149 73 0 chr9 41481326 41481587 -76381040 - AluJb SINE Alu -32 280 1 524 254 71 12 chr9 41481587 41481756 -76380871 - MIR SINE MIR -71 191 13 465 259 182 0 chr9 41482494 41482637 -76379990 - MER5A DNA MER1_type 0 189 21 659 330 66 24 chr9 41482778 41482877 -76379750 + L2 LINE L2 2959 3052 -261 2371 91 0 0 chr9 41482877 41483225 -76379402 - AluSp SINE Alu 0 348 1 659 330 66 24 chr9 41483225 41483457 -76379170 + L2 LINE L2 3052 3305 -8 2119 142 7 0 chr9 41483458 41483768 -76378859 + AluSx SINE Alu 1 312 0 535 340 7 0 chr9 41484103 41484247 -76378380 - L2 LINE L2 -1 3271 3127 313 235 62 0 chr9 41485442 41485523 -76377104 - MIR3 SINE MIR -15 193 108 670 176 125 60 chr9 41486410 41486626 -76376001 - MIR SINE MIR -10 252 23 320 93 0 0 chr9 41486744 41486787 -76375840 + MIR SINE MIR 104 146 -62 288 320 24 8 chr9 41487125 41487250 -76375377 - LTR33 LTR ERVL -5 516 390 262 253 154 68 chr9 41487301 41487522 -76375105 - LTR33 LTR ERVL -235 286 47 265 252 180 18 chr9 41487893 41488004 -76374623 + L2 LINE L2 3142 3270 -2 603 254 112 12 chr9 41488581 41488750 -76373877 + MIR SINE MIR 13 198 -64 669 179 9 0 chr9 41488763 41488869 -76373758 + FLAM_A SINE Alu 1 107 -35 2052 110 35 24 chr9 41488880 41489170 -76373457 - AluSq SINE Alu -20 293 1 2278 119 6 0 chr9 41489820 41490131 -76372496 + AluSq SINE Alu 1 313 0 349 263 132 33 chr9 41490195 41490347 -76372280 + MIR SINE MIR 64 230 -32 268 178 0 68 chr9 41490581 41490654 -76371973 + L2 LINE L2 3163 3230 -83 2449 158 17 13 chr9 41491184 41491653 -76370974 + L1MB7 LINE L1 5714 6184 0 335 213 133 0 chr9 41492353 41492428 -76370199 + MIR3 SINE MIR 76 160 -48 413 343 58 0 chr9 41492673 41492845 -76369782 + MIR SINE MIR 49 230 -32 2109 139 0 3 chr9 41492886 41493180 -76369447 - AluSx SINE Alu -19 293 1 301 304 138 54 chr9 41493244 41493593 -76369034 - MLT1J2 LTR MaLR -21 429 52 427 256 160 0 chr9 41494073 41494229 -76368398 + MIR SINE MIR 70 250 -12 287 274 25 96 chr9 41494560 41494717 -76367910 + MIR3 SINE MIR 40 185 -23 1062 227 36 8 chr9 41495081 41495332 -76367295 - MIR SINE MIR 0 262 5 758 237 34 36 chr9 41495334 41495588 -76367039 - MIR SINE MIR -3 259 7 1815 295 35 42 chr9 41498095 41499132 -76363495 - SST1 Satellite centromeric -534 1029 1 387 73 0 0 chr9 41499830 41499885 -76362742 + (CA)n Simple_repeat Simple_repeat 2 56 0 200 154 19 0 chr9 41499892 41499944 -76362683 + GA-rich Low_complexity Low_complexity 2 54 0 1274 184 57 111 chr9 41500171 41500557 -76362070 - MLT1A1 LTR MaLR 0 365 1 674 241 102 62 chr9 41500972 41501254 -76361373 - L1ME LINE L1 -393 5771 5502 2615 89 3 43 chr9 41501254 41501624 -76361003 + THE1A LTR MaLR 1 355 0 11389 115 2 1 chr9 41501624 41503201 -76359426 + THE1A-int LTR MaLR 1 1580 0 2259 141 0 22 chr9 41503201 41503564 -76359063 + THE1A LTR MaLR 1 355 0 674 241 102 62 chr9 41503564 41503728 -76358899 - L1ME LINE L1 -661 5503 5305 1956 151 3 3 chr9 41503844 41504136 -76358491 - AluSq SINE Alu -19 294 3 884 159 0 0 chr9 41504359 41504491 -76358136 - FLAM_C SINE Alu -1 132 1 1410 218 39 0 chr9 41504950 41505070 -76357557 + AluJb SINE Alu 1 115 -197 198 0 0 0 chr9 41505070 41505092 -76357535 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1410 218 39 0 chr9 41505092 41505256 -76357371 + AluJb SINE Alu 115 296 -16 3961 153 44 4 chr9 41505258 41505939 -76356688 + Tigger1 DNA MER2_type 1066 1773 -645 2218 120 7 0 chr9 41505939 41506238 -76356389 - AluSp SINE Alu -12 301 1 550 206 32 123 chr9 41506295 41506514 -76356113 + MER115 DNA AcHobo 445 643 -50 32 43 0 0 chr9 41506695 41506741 -76355886 + AT_rich Low_complexity Low_complexity 1 46 0 533 85 79 18 chr9 41506741 41506905 -76355722 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 3628 157 2 11 chr9 41506906 41507413 -76355214 + Tigger1 DNA MER2_type 1801 2302 -116 1946 136 39 0 chr9 41507413 41507693 -76354934 - AluSx SINE Alu -20 292 2 3628 157 2 11 chr9 41507693 41507809 -76354818 + Tigger1 DNA MER2_type 2302 2418 0 356 267 22 22 chr9 41507812 41507947 -76354680 - LTR16C LTR ERVL -17 474 340 997 275 107 26 chr9 41508294 41508840 -76353787 + MER115 DNA AcHobo 15 643 -50 1716 115 32 18 chr9 41509248 41509527 -76353100 - L1MA4 LINE L1 0 6300 6018 413 245 118 98 chr9 41509847 41510051 -76352576 - MIR SINE MIR -11 251 44 1952 154 0 7 chr9 41510151 41510450 -76352177 + AluSx SINE Alu 1 297 -15 336 297 50 0 chr9 41510547 41510648 -76351979 - L2 LINE L2 -15 3298 3193 188 246 18 53 chr9 41510964 41511021 -76351606 + L3 LINE CR1 1515 1569 -8 379 344 56 19 chr9 41511198 41511413 -76351214 - MIR SINE MIR -12 250 28 24 32 0 0 chr9 41511797 41511828 -76350799 + AT_rich Low_complexity Low_complexity 1 31 0 239 313 10 10 chr9 41511869 41511968 -76350659 + L1M4 LINE L1 3767 3865 -2281 602 111 0 11 chr9 41512066 41512156 -76350471 - L1PA16 LINE L1 -9 6157 6069 803 180 0 50 chr9 41512394 41512533 -76350094 + FLAM_A SINE Alu 1 132 -1 1456 230 19 6 chr9 41512534 41512862 -76349765 - MER93a LTR ERV1 -7 395 17 201 74 0 0 chr9 41513006 41513033 -76349594 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 599 177 26 44 chr9 41513385 41513498 -76349129 - AluSp SINE Alu -101 212 102 1836 152 3 7 chr9 41513590 41513880 -76348747 + AluJb SINE Alu 1 289 -23 2082 132 7 3 chr9 41514730 41515026 -76347601 + AluSq SINE Alu 5 301 -12 582 287 67 22 chr9 41515157 41515504 -76347123 + L1ME3A LINE L1 5421 5784 -389 1839 161 0 0 chr9 41515510 41515853 -76346774 - AluSx SINE Alu 0 345 3 1944 130 16 39 chr9 41515855 41516020 -76346607 - AluSx SINE Alu -12 300 144 1872 151 7 0 chr9 41516020 41516305 -76346322 - AluY SINE Alu -17 294 8 1944 130 16 39 chr9 41516305 41516446 -76346181 - AluSx SINE Alu -168 144 1 264 226 54 21 chr9 41516486 41516579 -76346048 + L1ME3A LINE L1 5852 5947 -223 1455 143 4 29 chr9 41516627 41516865 -76345762 + AluSg/x SINE Alu 66 297 -15 21 36 0 0 chr9 41516865 41516893 -76345734 + AT_rich Low_complexity Low_complexity 1 28 0 281 133 50 2 chr9 41517223 41517465 -76345162 + AluSq SINE Alu 1 292 -11 3474 179 40 17 chr9 41517731 41518424 -76344203 + L1MC2 LINE L1 5616 6328 -16 2088 114 0 0 chr9 41518424 41518752 -76343875 - AluY SINE Alu 0 328 1 3474 179 40 17 chr9 41518752 41518765 -76343862 + L1MC2 LINE L1 6328 6339 -5 963 170 0 0 chr9 41518765 41518912 -76343715 - AluJb SINE Alu -29 283 137 1387 204 23 5 chr9 41518917 41519232 -76343395 + L1MC/D LINE L1 5370 5629 -715 40 0 0 0 chr9 41519232 41519272 -76343355 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr9 41519451 41519474 -76343153 + AT_rich Low_complexity Low_complexity 1 23 0 506 167 24 0 chr9 41519742 41519826 -76342801 + AluJ/FLAM SINE Alu 1 86 -226 223 290 40 95 chr9 41519965 41520165 -76342462 + L2 LINE L2 3119 3307 -6 550 323 102 43 chr9 41520365 41520854 -76341773 - LTR33A LTR ERVL -4 519 2 1939 138 10 3 chr9 41520918 41521216 -76341411 + AluSq SINE Alu 14 313 0 829 183 12 47 chr9 41521216 41521385 -76341242 + AluSg/x SINE Alu 132 294 -16 800 174 0 30 chr9 41521596 41521728 -76340899 + FLAM_C SINE Alu 3 130 -13 443 84 42 11 chr9 41521728 41521823 -76340804 + A-rich Low_complexity Low_complexity 1 98 0 353 167 0 56 chr9 41521849 41521921 -76340706 + AluJ/FRAM SINE Alu 225 292 -10 1335 197 4 0 chr9 41522377 41522626 -76340001 + AluJb SINE Alu 1 250 -62 241 154 0 0 chr9 41522626 41522665 -76339962 + Alu SINE Alu 39 77 -226 655 273 60 0 chr9 41522939 41523122 -76339505 - MIR SINE MIR -10 252 59 200 321 18 0 chr9 41523209 41523265 -76339362 - MIR SINE MIR -115 93 37 832 81 9 0 chr9 41523302 41523413 -76339214 - HY1 scRNA scRNA 0 112 1 333 213 18 29 chr9 41523522 41523683 -76338944 + MIR SINE MIR 29 260 -2 21 36 0 0 chr9 41524043 41524071 -76338556 + AT_rich Low_complexity Low_complexity 1 28 0 24 85 0 0 chr9 41524746 41524805 -76337822 + AT_rich Low_complexity Low_complexity 1 59 0 333 239 109 0 chr9 41526469 41526561 -76336066 - L2 LINE L2 -10 3303 3202 837 253 54 64 chr9 41527052 41527349 -76335278 + AluJb SINE Alu 9 302 -10 1734 136 12 0 chr9 41527355 41527612 -76335015 + AluSx SINE Alu 21 280 -32 351 0 0 0 chr9 41527613 41527652 -76334975 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 19569 21 1 0 chr9 41528613 41531671 -76330956 + L1HS LINE L1 3096 6155 0 219 69 0 0 chr9 41531671 41531700 -76330927 + (A)n Simple_repeat Simple_repeat 1 29 0 30 0 0 0 chr9 41532102 41532132 -76330495 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr9 41532400 41532439 -76330188 + AT_rich Low_complexity Low_complexity 1 39 0 1141 90 0 0 chr9 41532531 41532676 -76329951 + L1PA6 LINE L1 6005 6149 -5 32 26 0 0 chr9 41532844 41532883 -76329744 + AT_rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr9 41532941 41532983 -76329644 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr9 41533000 41533025 -76329602 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 41533069 41533098 -76329529 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr9 41533137 41533181 -76329446 + AT_rich Low_complexity Low_complexity 1 44 0 21 57 0 0 chr9 41533214 41533249 -76329378 + AT_rich Low_complexity Low_complexity 1 35 0 2161 120 0 23 chr9 41533279 41533588 -76329039 - AluY SINE Alu -9 302 1 723 229 51 6 chr9 41533713 41533870 -76328757 + MLT1A2 LTR MaLR 157 320 -54 1468 303 43 72 chr9 41533878 41535132 -76327495 + L1PA12 LINE L1 8 1762 -5819 2166 162 25 25 chr9 41535132 41535496 -76327131 + THE1B LTR MaLR 1 364 0 11529 108 5 2 chr9 41535496 41537067 -76325560 + THE1B-int LTR MaLR 1 1575 -5 2061 184 16 28 chr9 41537072 41537436 -76325191 + THE1B LTR MaLR 1 360 -4 6909 269 19 12 chr9 41537440 41539190 -76323437 + L1PA12 LINE L1 1587 3324 -4260 1878 113 93 24 chr9 41539190 41539481 -76323146 + AluY SINE Alu 1 311 0 6909 269 19 12 chr9 41539481 41541665 -76320962 + L1PA12 LINE L1 3324 5185 -2399 188 246 18 53 chr9 41541931 41541988 -76320639 - L3 LINE CR1 -8 1569 1515 336 297 50 0 chr9 41542304 41542405 -76320222 + L2 LINE L2 3193 3298 -15 2156 125 0 0 chr9 41542502 41542797 -76319830 - AluSg SINE Alu -15 295 1 2035 107 35 24 chr9 41543447 41543737 -76318890 + AluSq SINE Alu 1 293 -20 698 179 9 0 chr9 41543748 41543854 -76318773 - FLAM_A SINE Alu -35 107 1 546 250 119 12 chr9 41543867 41544035 -76318592 - MIR SINE MIR -64 198 13 262 252 180 18 chr9 41544612 41544723 -76317904 - L2 LINE L2 -2 3270 3142 698 147 7 59 chr9 41544892 41545058 -76317569 - AluSp/q SINE Alu 0 313 176 2086 117 0 0 chr9 41545114 41545395 -76317232 + AluSg SINE Alu 29 309 -1 2286 214 117 8 chr9 41545783 41546303 -76316324 - MER77 LTR ERV1 -28 577 1 238 308 15 0 chr9 41546319 41546384 -76316243 + L1MC/D LINE L1 5511 5576 -2232 1842 172 3 7 chr9 41546415 41546717 -76315910 - AluJb SINE Alu -11 301 1 260 209 57 19 chr9 41546717 41546750 -76315877 + (TATATG)n Simple_repeat Simple_repeat 6 36 -78 1854 152 38 0 chr9 41546750 41547040 -76315587 + AluSx SINE Alu 1 301 -11 260 209 57 19 chr9 41547040 41547111 -76315516 + (TATATG)n Simple_repeat Simple_repeat 36 114 0 1651 167 26 22 chr9 41547411 41547722 -76314905 - MER44D DNA MER2_type -1 604 421 1839 157 3 40 chr9 41547723 41548116 -76314511 - AluSx SINE Alu 0 381 1 272 252 68 0 chr9 41548189 41548292 -76314335 + HAL1b LINE L1 1234 1343 -5 1824 169 11 0 chr9 41548427 41548706 -76313921 + AluSx SINE Alu 3 284 -28 1885 138 7 0 chr9 41548795 41549070 -76313557 + AluSx SINE Alu 1 277 -35 423 0 0 0 chr9 41549074 41549121 -76313506 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr9 41550211 41550232 -76312395 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 1537 197 14 7 chr9 41551060 41551350 -76311277 - AluJb SINE Alu -20 292 1 604 157 0 3 chr9 41551476 41551713 -76310914 + AluSx SINE Alu 1 308 -1 1532 180 54 21 chr9 41551798 41552131 -76310496 - L1MB8 LINE L1 0 6178 5835 841 255 49 75 chr9 41552555 41553038 -76309589 - PABL_B LTR ERV1 -42 625 1 1959 154 3 0 chr9 41553289 41553601 -76309026 - AluSq SINE Alu 0 313 1 2053 128 3 0 chr9 41553603 41553893 -76308734 - AluSx SINE Alu -21 291 1 1213 123 0 6 chr9 41553896 41554075 -76308552 - AluSq SINE Alu -5 308 131 23 0 0 0 chr9 41554077 41554100 -76308527 + AT_rich Low_complexity Low_complexity 1 23 0 530 115 13 0 chr9 41554350 41554428 -76308199 + AluY SINE Alu 217 295 -16 21 0 0 0 chr9 41554522 41554543 -76308084 + AT_rich Low_complexity Low_complexity 1 21 0 2017 131 3 16 chr9 41554715 41555020 -76307607 + AluSx SINE Alu 1 301 -11 1971 141 7 0 chr9 41555327 41555746 -76306881 + AluSx SINE Alu 4 424 0 1593 188 6 13 chr9 41556558 41556872 -76305755 - AluJb SINE Alu 0 312 1 2116 116 3 14 chr9 41556940 41557257 -76305370 + AluSp SINE Alu 1 314 0 1869 170 0 26 chr9 41557332 41557643 -76304984 + AluJo SINE Alu 1 303 -9 2100 138 0 0 chr9 41557643 41557939 -76304688 + AluSc SINE Alu 1 296 -13 1497 165 34 4 chr9 41557939 41558205 -76304422 - MER54A LTR ERVL -627 274 1 1606 147 143 0 chr9 41558388 41558647 -76303980 - AluSx SINE Alu -6 296 1 2244 107 3 0 chr9 41559247 41559545 -76303082 - AluSp SINE Alu -14 299 1 1467 166 6 94 chr9 41559550 41559881 -76302746 - AluSq SINE Alu -11 302 1 279 225 0 56 chr9 41560334 41560405 -76302222 - AluJ/FRAM SINE Alu -11 291 225 27 62 0 0 chr9 41560427 41560475 -76302152 + AT_rich Low_complexity Low_complexity 1 48 0 1682 142 4 0 chr9 41560704 41560979 -76301648 + AluSx SINE Alu 37 312 0 1887 142 10 3 chr9 41560979 41561290 -76301337 + AluSq SINE Alu 1 313 0 834 184 12 48 chr9 41561290 41561458 -76301169 + AluSg/x SINE Alu 134 295 -17 333 198 64 31 chr9 41561669 41561787 -76300840 + AluJo SINE Alu 3 116 -186 1061 14 35 0 chr9 41561787 41561929 -76300698 + (TAAAA)n Simple_repeat Simple_repeat 2 148 0 333 198 64 31 chr9 41561929 41562027 -76300600 + AluJo SINE Alu 116 292 -10 1292 189 4 0 chr9 41562484 41562728 -76299899 + AluJb SINE Alu 1 245 -67 1829 126 7 7 chr9 41562728 41563006 -76299621 + AluSx SINE Alu 34 311 -1 1090 224 17 23 chr9 41563049 41563348 -76299279 + AluJb SINE Alu 15 311 -1 3824 173 83 32 chr9 41563404 41564135 -76298492 - MER21B LTR ERV1 -1 862 83 1915 124 16 35 chr9 41564135 41564449 -76298178 + AluSx SINE Alu 3 310 -2 3824 173 83 32 chr9 41564449 41564537 -76298090 - MER21B LTR ERV1 -780 83 1 1858 159 20 48 chr9 41564838 41565235 -76297392 - LTR25 LTR ERV1 -47 747 362 903 151 201 28 chr9 41565235 41565563 -76297064 + LTR46 LTR ERV1 1 460 0 622 191 35 0 chr9 41565563 41565666 -76296961 - LTR25 LTR ERV1 -438 356 250 421 165 23 120 chr9 41565660 41565793 -76296834 - MER61E LTR ERV1 -417 152 33 * 1282 77 18 0 chr9 41566433 41566603 -76296024 + AluSg/x SINE Alu 114 286 -24 489 288 133 45 chr9 41566608 41566962 -76295665 - L2 LINE L2 -82 3231 2847 296 105 0 0 chr9 41567014 41567052 -76295575 - Alu SINE Alu -263 38 1 2205 107 3 0 chr9 41567425 41567734 -76294893 - AluSx SINE Alu -2 310 1 1643 172 3 0 chr9 41567787 41568078 -76294549 - AluSx SINE Alu -16 296 5 870 121 0 0 chr9 41568310 41568434 -76294193 + AluSq/x SINE Alu 1 124 -188 273 274 25 96 chr9 41568822 41568979 -76293648 + MIR3 SINE MIR 40 185 -23 1056 223 36 8 chr9 41569343 41569594 -76293033 - MIR SINE MIR 0 262 5 760 237 34 36 chr9 41569596 41569850 -76292777 - MIR SINE MIR -3 259 7 1052 296 39 28 chr9 41572358 41572895 -76289732 - SST1 Satellite centromeric -534 1029 487 1742 144 4 0 chr9 41572896 41573160 -76289467 - AluSp SINE Alu -48 265 1 583 233 23 114 chr9 41573217 41573436 -76289191 + MER115 DNA AcHobo 445 643 -50 498 101 82 6 chr9 41573619 41573777 -76288850 + (TATAA)n Simple_repeat Simple_repeat 5 174 0 33 56 0 0 chr9 41573777 41573831 -76288796 + AT_rich Low_complexity Low_complexity 1 54 0 3537 154 3 43 chr9 41573831 41574337 -76288290 + Tigger1 DNA MER2_type 1801 2277 -141 1908 118 39 0 chr9 41574337 41574617 -76288010 - AluSx SINE Alu -20 292 2 3537 154 3 43 chr9 41574617 41574754 -76287873 + Tigger1 DNA MER2_type 2277 2418 0 382 267 22 22 chr9 41574757 41574892 -76287735 - LTR16C LTR ERVL -17 474 340 1168 270 109 28 chr9 41575239 41575785 -76286842 + MER115 DNA AcHobo 15 643 -50 1711 113 14 18 chr9 41576193 41576477 -76286150 - L1MA4 LINE L1 0 6300 6018 414 245 118 98 chr9 41576801 41577005 -76285622 - MIR SINE MIR -11 251 44 1859 151 0 7 chr9 41577105 41577404 -76285223 + AluSx SINE Alu 1 297 -15 307 284 59 65 chr9 41577501 41577670 -76284957 - L2 LINE L2 -15 3298 3131 190 246 18 53 chr9 41577918 41577975 -76284652 + L3 LINE CR1 1515 1569 -8 435 335 56 19 chr9 41578152 41578367 -76284260 - MIR SINE MIR -12 250 28 303 384 53 0 chr9 41578775 41578926 -76283701 + L1 LINE L1 3707 3865 -2281 572 111 0 11 chr9 41579024 41579114 -76283513 - L1PA16 LINE L1 -9 6157 6069 746 181 0 51 chr9 41579352 41579490 -76283137 + FLAM_A SINE Alu 1 131 -2 1467 221 21 7 chr9 41579491 41579819 -76282808 - MER93a LTR ERV1 -7 395 17 201 74 0 0 chr9 41579963 41579990 -76282637 + (CTTAT)n Simple_repeat Simple_repeat 5 31 0 558 212 0 18 chr9 41580342 41580455 -76282172 - AluSp SINE Alu -101 212 102 1712 155 3 7 chr9 41580547 41580837 -76281790 + AluJb SINE Alu 1 289 -23 2113 128 0 0 chr9 41581687 41581992 -76280635 + AluSq SINE Alu 5 309 -4 485 303 77 30 chr9 41582123 41582460 -76280167 + L1ME3A LINE L1 5421 5773 -389 44 35 0 0 chr9 41582474 41582532 -76280095 + AT_rich Low_complexity Low_complexity 1 58 0 1721 161 0 0 chr9 41582532 41582818 -76279809 - AluSx SINE Alu -24 288 3 1896 127 16 38 chr9 41582820 41582993 -76279634 - AluSx SINE Alu -4 308 144 1586 170 7 3 chr9 41582993 41583276 -76279351 - AluY SINE Alu -20 291 8 1896 127 16 38 chr9 41583276 41583417 -76279210 - AluSx SINE Alu -168 144 1 254 226 54 21 chr9 41583457 41583550 -76279077 + L1ME3A LINE L1 5852 5947 -223 1384 143 4 29 chr9 41583598 41583836 -76278791 + AluSg/x SINE Alu 66 297 -15 21 36 0 0 chr9 41583836 41583864 -76278763 + AT_rich Low_complexity Low_complexity 1 28 0 289 129 50 2 chr9 41584194 41584436 -76278191 + AluSq SINE Alu 1 292 -11 3272 177 40 16 chr9 41584702 41585395 -76277232 + L1MC2 LINE L1 5616 6328 -16 2021 112 0 7 chr9 41585395 41585714 -76276913 - AluY SINE Alu 0 311 1 3272 177 40 16 chr9 41585714 41585727 -76276900 + L1MC2 LINE L1 6328 6339 -5 931 163 0 0 chr9 41585727 41585874 -76276753 - AluJb SINE Alu -29 283 137 1372 206 23 5 chr9 41585879 41586194 -76276433 + L1MC/D LINE L1 5370 5629 -715 40 0 0 0 chr9 41586194 41586234 -76276393 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr9 41586413 41586436 -76276191 + AT_rich Low_complexity Low_complexity 1 23 0 914 222 14 32 chr9 41586709 41586925 -76275702 + AluSx SINE Alu 1 212 -100 233 182 0 0 chr9 41586934 41586978 -76275649 + Charlie1 DNA MER1_type 2718 2761 0 546 213 24 24 chr9 41586982 41587109 -76275518 - L2 LINE L2 0 3313 3187 983 122 0 0 chr9 41587147 41587286 -76275341 + AluSq/x SINE Alu 3 141 -171 2072 93 0 45 chr9 41587286 41587599 -76275028 + AluSx SINE Alu 1 299 -13 688 158 8 23 chr9 41587738 41587909 -76274718 - AluSp/q SINE Alu 0 313 176 1964 118 0 0 chr9 41587965 41588244 -76274383 + AluSg SINE Alu 29 307 -3 233 323 77 8 chr9 41588297 41588427 -76274200 + HAL1 LINE L1 2219 2357 -150 2306 215 115 6 chr9 41588632 41589152 -76273475 - MER77 LTR ERV1 -28 577 1 229 308 15 0 chr9 41589168 41589233 -76273394 + L1MC4 LINE L1 5511 5576 -2232 1730 176 3 7 chr9 41589264 41589566 -76273061 - AluJb SINE Alu -11 301 1 1787 156 10 3 chr9 41589599 41589907 -76272720 + AluSx SINE Alu 1 310 -2 1787 182 136 43 chr9 41589910 41590195 -76272432 - MER106B DNA MER1_type -527 532 275 1654 163 10 7 chr9 41590195 41590490 -76272137 - AluSx SINE Alu -16 296 1 1787 182 136 43 chr9 41590490 41590587 -76272040 - MER106B DNA MER1_type -784 275 188 2051 134 0 0 chr9 41590587 41590886 -76271741 + AluSx SINE Alu 1 299 -13 1787 182 136 43 chr9 41590886 41590986 -76271641 - MER106B DNA MER1_type -871 188 4 2049 130 0 0 chr9 41590988 41591287 -76271340 + AluSx SINE Alu 1 299 -13 1020 221 19 102 chr9 41591303 41591446 -76271181 + L1MC4 LINE L1 6646 6799 -1243 734 150 0 57 chr9 41591446 41591586 -76271041 - FLAM_C SINE Alu -1 132 1 1020 221 19 102 chr9 41591586 41591804 -76270823 + L1MC4 LINE L1 6799 6977 -1065 1958 130 7 3 chr9 41591804 41592103 -76270524 - AluSq SINE Alu -12 301 2 1210 102 5 88 chr9 41592441 41592682 -76269945 - AluSp SINE Alu 0 313 100 1954 131 0 3 chr9 41592682 41592979 -76269648 - AluSg SINE Alu -14 296 1 1691 149 7 24 chr9 41592987 41593276 -76269351 - AluSg SINE Alu -24 286 3 272 221 0 39 chr9 41593331 41593408 -76269219 - MER89 LTR ERV1 0 559 486 2094 237 9 14 chr9 41593411 41593537 -76269090 - L1P LINE L1 -858 5288 5163 1736 122 19 0 chr9 41593537 41593800 -76268827 - AluSg SINE Alu -3 307 40 2094 237 9 14 chr9 41593800 41594235 -76268392 - L1P LINE L1 -983 5163 4730 2338 156 19 12 chr9 41594245 41594663 -76267964 + L1PA15 LINE L1 5745 6165 0 2079 129 3 0 chr9 41594735 41595044 -76267583 + AluSg SINE Alu 1 310 0 2120 104 0 13 chr9 41595188 41595497 -76267130 + AluY SINE Alu 1 305 -6 2151 196 19 5 chr9 41595744 41596272 -76266355 - MER77 LTR ERV1 -28 577 2 1699 177 3 0 chr9 41596392 41596686 -76265941 - AluJb SINE Alu -17 295 1 252 188 47 0 chr9 41596687 41596719 -76265908 + (TA)n Simple_repeat Simple_repeat 1 30 -396 1664 182 3 0 chr9 41596719 41597016 -76265611 + AluSx SINE Alu 1 298 -14 252 188 47 0 chr9 41597016 41597094 -76265533 + (TA)n Simple_repeat Simple_repeat 30 426 0 1717 166 23 10 chr9 41597370 41597678 -76264949 - MER44D DNA MER2_type -1 604 421 1738 182 0 0 chr9 41597678 41598100 -76264527 - AluSx SINE Alu 0 425 4 288 276 52 15 chr9 41598144 41598278 -76264349 + HAL1b LINE L1 1205 1343 -5 613 189 38 0 chr9 41598407 41598513 -76264114 + AluSq/x SINE Alu 2 111 -202 839 127 22 0 chr9 41598542 41598676 -76263951 - AluSg/x SINE Alu -20 290 154 241 302 71 44 chr9 41598708 41598890 -76263737 + L1ME3A LINE L1 5970 6156 -14 573 208 169 65 chr9 41600295 41600603 -76262024 - LTR16A1 LTR ERVL 0 457 118 461 240 187 18 chr9 41600757 41600982 -76261645 + L2 LINE L2 59 321 -2993 2602 120 47 49 chr9 41600982 41601578 -76261049 + MER4E LTR ERV1 1 766 0 459 240 98 49 chr9 41601647 41601851 -76260776 + L2 LINE L2 651 864 -2450 787 71 71 5 chr9 41601855 41602009 -76260618 + LTR19A LTR ERV1 7 241 -245 260 95 0 0 chr9 41602009 41602051 -76260576 + LTR19A LTR ERV1 445 486 0 230 231 92 15 chr9 41602051 41602181 -76260446 + L2 LINE L2 879 1018 -2296 202 291 63 38 chr9 41602197 41602355 -76260272 - L3 LINE CR1 -315 1262 1101 * 260 303 148 16 chr9 41602330 41602452 -76260175 + L2 LINE L2 3163 3300 -13 528 161 60 0 chr9 41602467 41602616 -76260011 + (TGGA)n Simple_repeat Simple_repeat 4 161 0 763 152 35 10 chr9 41602646 41603147 -76259480 + (TGGA)n Simple_repeat Simple_repeat 1 513 0 690 191 21 9 chr9 41603166 41603498 -76259129 + (TGGA)n Simple_repeat Simple_repeat 1 336 0 1313 213 10 10 chr9 41604291 41604601 -76258026 + AluJo SINE Alu 1 310 -2 298 281 13 0 chr9 41605000 41605087 -76257540 - MIR SINE MIR -65 143 80 309 314 32 32 chr9 41606122 41606307 -76256320 + L2 LINE L2 3111 3295 -18 745 139 0 0 chr9 41606307 41606422 -76256205 - AluSx SINE Alu -4 305 191 1035 106 0 0 chr9 41606423 41606564 -76256063 - AluSx SINE Alu -172 141 1 772 147 0 29 chr9 41606617 41606753 -76255874 + FLAM_C SINE Alu 12 143 0 1185 313 92 18 chr9 41606770 41607502 -76255125 - L1M4 LINE L1 -1492 4654 3869 622 273 74 24 chr9 41607749 41608086 -76254541 + MER74B LTR ERVL 213 566 -56 268 88 0 0 chr9 41608212 41608246 -76254381 - AluSq/x SINE Alu -193 110 77 * 1597 237 125 31 chr9 41608236 41608409 -76254218 + MER69B DNA AcHobo 520 675 -1851 1559 161 50 4 chr9 41608409 41608688 -76253939 - AluJb SINE Alu -20 292 1 1597 237 125 31 chr9 41608688 41609122 -76253505 + MER69B DNA AcHobo 675 1184 -42 418 244 84 30 chr9 41609624 41609755 -76252872 + MER20 DNA MER1_type 25 162 -57 234 156 44 0 chr9 41610107 41610152 -76252475 - MIR SINE MIR -108 154 108 297 194 15 0 chr9 41610846 41610913 -76251714 + MIR SINE MIR 77 144 -118 2029 115 0 37 chr9 41610955 41611281 -76251346 + AluSq SINE Alu 1 315 0 810 204 6 29 chr9 41611306 41611478 -76251149 + FAM SINE Alu 1 44 -5 728 176 64 60 chr9 41612794 41613082 -76249545 + MSTD LTR MaLR 2 337 -59 2271 112 0 0 chr9 41613082 41613386 -76249241 - AluSx SINE Alu -8 304 1 634 243 14 7 chr9 41613388 41613536 -76249091 - MLT1C LTR MaLR -285 182 34 * 1961 99 0 29 chr9 41613545 41613817 -76248810 - AluSx SINE Alu -14 298 35 631 243 6 17 chr9 41613867 41614044 -76248583 - HAL1b LINE L1 -882 466 292 322 156 250 73 chr9 41614147 41614243 -76248384 + FLAM_A SINE Alu 3 115 -18 2286 104 7 0 chr9 41614330 41614638 -76247989 - AluSg SINE Alu 0 310 1 980 205 14 54 chr9 41615033 41615208 -76247419 - AluJo SINE Alu -6 306 146 1829 158 0 48 chr9 41615208 41615524 -76247103 - AluJb SINE Alu -11 301 1 980 205 14 54 chr9 41615524 41615645 -76246982 - AluJo SINE Alu -166 146 22 725 158 0 0 chr9 41615652 41615766 -76246861 - MER41B LTR ERV1 -12 623 510 2732 84 5 11 chr9 41615768 41616147 -76246480 - MER41B LTR ERV1 -258 377 1 414 111 48 0 chr9 41616619 41616682 -76245945 + MLT1J LTR MaLR 6 71 -396 961 267 22 83 chr9 41617265 41617756 -76244871 + MLT1J LTR MaLR 37 497 -14 687 217 14 7 chr9 41617855 41617998 -76244629 + MER83C LTR ERV1 49 192 -181 229 192 39 0 chr9 41618176 41618228 -76244399 + MER83B LTR ERV1 134 187 -191 866 247 94 0 chr9 41618237 41618460 -76244167 + MER83C LTR ERV1 130 373 0 361 205 0 12 chr9 41618506 41618589 -76244038 - MIR SINE MIR -101 161 80 908 154 6 0 chr9 41620945 41621120 -76241507 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 666 229 0 0 chr9 41621098 41621277 -76241350 + (CCCA)n Simple_repeat Simple_repeat 1 179 0 * 347 234 20 37 chr9 41621579 41621598 -76241029 - ORSL DNA AcHobo -4 271 253 3788 113 11 31 chr9 41621598 41621733 -76240894 - MER4A LTR ERV1 0 600 464 2062 113 0 4 chr9 41621733 41622040 -76240587 - AluSg1 SINE Alu 0 312 7 3788 113 11 31 chr9 41622040 41622515 -76240112 - MER4A LTR ERV1 -136 464 1 347 234 20 37 chr9 41622515 41622712 -76239915 - ORSL DNA AcHobo -22 253 22 3298 161 18 76 chr9 41623185 41623919 -76238708 + LTR8 LTR ERV1 1 691 0 920 305 73 9 chr9 41625165 41625591 -76237036 + L1MC/D LINE L1 5298 5750 -2058 2592 56 0 3 chr9 41626332 41626636 -76235991 + AluY SINE Alu 1 303 -8 2441 96 3 0 chr9 41627499 41627811 -76234816 - AluSq SINE Alu 0 313 1 384 229 34 42 chr9 41628169 41628287 -76234340 - MER20 DNA MER1_type -4 215 99 2252 79 14 3 chr9 41628417 41628709 -76233918 + AluSc SINE Alu 1 295 -14 1842 183 117 76 chr9 41629086 41629584 -76233043 - MLT2B1 LTR ERVL 0 520 3 2450 78 0 0 chr9 41629747 41630053 -76232574 + AluY SINE Alu 1 306 -5 2964 231 42 1 chr9 41630054 41630774 -76231853 + L1 LINE L1 3349 4097 -2049 28 29 0 0 chr9 41630775 41630810 -76231817 + AT_rich Low_complexity Low_complexity 1 35 0 1417 97 97 0 chr9 41630815 41631052 -76231575 - L1MA8 LINE L1 0 6291 6032 3722 139 20 98 chr9 41631054 41631249 -76231378 + L1MA9 LINE L1 5137 5346 -966 2322 63 21 0 chr9 41631249 41631533 -76231094 + AluY SINE Alu 1 290 -21 3722 139 20 98 chr9 41631533 41632296 -76230331 + L1MA9 LINE L1 5346 6019 -293 347 109 0 0 chr9 41632299 41632345 -76230282 + L1 LINE L1 4088 4133 -2013 2629 188 34 3 chr9 41632346 41633116 -76229511 + L1M3 LINE L1 5001 5803 -368 799 191 7 0 chr9 41634582 41634734 -76227893 + L1 LINE L1 4144 4296 -1850 363 181 0 0 chr9 41634734 41634805 -76227822 + L1MA5A LINE L1 6226 6297 0 25 31 0 0 chr9 41634878 41634910 -76227717 + AT_rich Low_complexity Low_complexity 1 32 0 2421 65 0 3 chr9 41634939 41635233 -76227394 + AluY SINE Alu 1 293 -18 2312 92 0 3 chr9 41635594 41635887 -76226740 - AluSc SINE Alu -17 292 1 23 0 0 0 chr9 41636025 41636048 -76226579 + AT_rich Low_complexity Low_complexity 1 23 0 2226 51 0 0 chr9 41636325 41636619 -76226008 - AluY SINE Alu 0 321 28 835 258 41 54 chr9 41637138 41637590 -76225037 + MLT1C LTR MaLR 2 466 -1 237 308 30 30 chr9 41637716 41637849 -76224778 - L2 LINE L2 -4 3309 3177 2245 115 0 0 chr9 41638310 41638606 -76224021 + AluSq SINE Alu 1 296 -17 297 205 248 31 chr9 41640147 41640308 -76222319 + L2 LINE L2 3118 3313 0 2765 16 0 19 chr9 41640540 41640854 -76221773 - AluYa5 SINE Alu -3 308 1 260 285 165 45 chr9 41641817 41642017 -76220610 - MIR SINE MIR -19 243 20 721 320 62 49 chr9 41642277 41642665 -76219962 + L1MB2 LINE L1 413 805 -5498 261 0 0 0 chr9 41642833 41642862 -76219765 + (T)n Simple_repeat Simple_repeat 1 29 0 6397 224 79 41 chr9 41643107 41643425 -76219202 + L1MB2 LINE L1 773 1077 -5330 2247 125 0 22 chr9 41643425 41643745 -76218882 + AluSq SINE Alu 1 313 0 2376 97 0 3 chr9 41643746 41644056 -76218571 + AluY SINE Alu 1 309 -2 6397 224 79 41 chr9 41644056 41645993 -76216634 + L1MB2 LINE L1 1077 2939 -3468 2306 80 3 0 chr9 41645993 41646281 -76216346 - AluY SINE Alu -22 289 1 6397 224 79 41 chr9 41646281 41646511 -76216116 + L1MB2 LINE L1 2939 3159 -3248 2435 93 0 3 chr9 41646511 41646822 -76215805 + AluY SINE Alu 1 310 -1 6397 224 79 41 chr9 41646822 41647077 -76215550 + L1MB2 LINE L1 3159 3403 -3004 2450 82 0 0 chr9 41647077 41647383 -76215244 + AluY SINE Alu 1 306 -5 6397 224 79 41 chr9 41647383 41648146 -76214481 + L1MB2 LINE L1 3403 4135 -2272 1417 97 97 0 chr9 41648146 41648383 -76214244 - L1MA8 LINE L1 0 6291 6032 6397 224 79 41 chr9 41648383 41648581 -76214046 + L1MB2 LINE L1 4135 4324 -2083 2337 60 21 0 chr9 41648581 41648865 -76213762 + AluY SINE Alu 1 290 -21 6397 224 79 41 chr9 41648865 41650811 -76211816 + L1MB2 LINE L1 4324 6406 -1 1696 194 129 12 chr9 41650860 41651278 -76211349 + MLT1C LTR MaLR 1 467 0 1868 102 4 23 chr9 41652473 41652729 -76209898 + AluSq SINE Alu 1 251 -62 1723 181 0 26 chr9 41653246 41653550 -76209077 + AluJb SINE Alu 1 296 -16 207 293 53 53 chr9 41653837 41653970 -76208657 - MER5A DNA MER1_type -54 135 3 1318 221 112 66 chr9 41654331 41654788 -76207839 + MLT2F LTR ERVL 186 663 0 752 198 0 0 chr9 41654847 41654973 -76207654 + FLAM_C SINE Alu 2 127 -16 3159 232 67 26 chr9 41654977 41656195 -76206432 + L1MEc LINE L1 2037 3268 -2947 2204 116 3 0 chr9 41657003 41657296 -76205331 + AluSx SINE Alu 1 294 -18 232 296 82 0 chr9 41657508 41657606 -76205021 - MER5B DNA MER1_type 0 178 73 2033 130 3 0 chr9 41657622 41657914 -76204713 - AluSx SINE Alu -19 293 1 2400 59 0 0 chr9 41659888 41660170 -76202457 + AluY SINE Alu 1 280 -31 205 40 0 0 chr9 41660170 41660195 -76202432 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 607 307 17 6 chr9 41661156 41661335 -76201292 + MLT1J LTR MaLR 10 190 -321 15019 192 18 13 chr9 41661344 41666310 -76196317 + L1PA13 LINE L1 1 5015 -1782 4194 112 13 5 chr9 41666310 41666935 -76195692 + L1PA13 LINE L1 6176 6807 -7 2529 49 3 16 chr9 41666935 41667242 -76195385 + AluY SINE Alu 1 303 -8 186 364 13 0 chr9 41667250 41667327 -76195300 - MIR SINE MIR -151 111 34 22 35 0 0 chr9 41668436 41668465 -76194162 + AT_rich Low_complexity Low_complexity 1 29 0 1515 124 5 0 chr9 41670069 41670287 -76192340 + AluSg/x SINE Alu 89 307 -5 1516 205 6 21 chr9 41670297 41670628 -76191999 + L1PB4 LINE L1 5831 6156 0 1672 201 74 37 chr9 41671554 41672041 -76190586 + MLT1D LTR MaLR 1 505 0 333 0 0 0 chr9 41672833 41672870 -76189757 + (TG)n Simple_repeat Simple_repeat 1 37 0 334 322 17 25 chr9 41672925 41673043 -76189584 + L2 LINE L2 2906 3022 -291 1908 204 104 7 chr9 41673078 41673109 -76189518 - MLT2B2 LTR ERVL -11 504 477 363 44 0 0 chr9 41673109 41673154 -76189473 + (TG)n Simple_repeat Simple_repeat 2 46 0 1908 204 104 7 chr9 41673154 41673572 -76189055 - MLT2B2 LTR ERVL -38 477 11 411 281 48 0 chr9 41673588 41673734 -76188893 + L2 LINE L2 3161 3313 0 330 50 0 0 chr9 41673737 41673777 -76188850 - L1P LINE L1 -4370 1776 1737 3341 19 0 0 chr9 41673778 41674154 -76188473 + L1PA2 LINE L1 5780 6155 0 2161 85 0 0 chr9 41674182 41674453 -76188174 - AluY SINE Alu -3 308 38 2404 190 27 40 chr9 41674754 41675232 -76187395 + MLT2B1 LTR ERVL 1 472 -48 1340 133 9 14 chr9 41676721 41676939 -76185688 + L1PB3 LINE L1 5933 6149 -5 2124 174 16 5 chr9 41677357 41677743 -76184884 + MLT1B LTR MaLR 1 390 0 2415 92 0 0 chr9 41677767 41678071 -76184556 + AluY SINE Alu 1 304 -7 1147 168 0 0 chr9 41678071 41678250 -76184377 + AluSg/x SINE Alu 134 312 0 3516 63 44 6 chr9 41678534 41679013 -76183614 - L1PA8 LINE L1 -1 6171 5675 1345 226 43 3 chr9 41679013 41679314 -76183313 + MER65C LTR ERV1 37 349 -112 1008 146 20 0 chr9 41679318 41679469 -76183158 - LTR12 LTR ERV1 -232 482 329 * 6264 141 1 9 chr9 41679466 41680482 -76182145 - HERV9 LTR ERV1 -7235 1164 72 611 119 13 102 chr9 41680482 41680605 -76182022 - LTR12 LTR ERV1 0 714 582 2371 86 3 32 chr9 41680605 41680920 -76181707 - AluY SINE Alu -5 306 1 611 119 13 102 chr9 41680920 41680946 -76181681 - LTR12 LTR ERV1 -132 582 301 317 304 16 0 chr9 41680946 41681071 -76181556 - LTR30 LTR ERV1 -79 643 517 1215 118 5 62 chr9 41681071 41681282 -76181345 - LTR12 LTR ERV1 -463 251 53 238 250 0 0 chr9 41681282 41681334 -76181293 - LTR30 LTR ERV1 -670 52 1 440 236 0 0 chr9 41681334 41681423 -76181204 + LTR51 LTR ERV1 583 671 0 242 252 32 81 chr9 41682731 41682854 -76179773 + MIR SINE MIR 141 257 -5 398 256 104 0 chr9 41683091 41683216 -76179411 - MIR SINE MIR -35 227 90 290 310 17 9 chr9 41686115 41686231 -76176396 + MIR SINE MIR 41 157 -105 216 288 50 0 chr9 41686349 41686429 -76176198 + MIR3 SINE MIR 82 165 -43 2033 133 57 31 chr9 41686739 41687092 -76175535 + THE1B LTR MaLR 3 364 0 216 67 0 0 chr9 41687450 41687480 -76175147 + (TG)n Simple_repeat Simple_repeat 1 30 0 2516 53 0 3 chr9 41688085 41688387 -76174240 - AluY SINE Alu -10 301 1 243 229 98 35 chr9 41689125 41689257 -76173370 - L1ME LINE L1 -5901 169 30 2505 73 0 6 chr9 41689441 41689786 -76172841 + AluY SINE Alu 1 343 0 2030 208 50 15 chr9 41689806 41690126 -76172501 - L1MB5 LINE L1 -6 6168 5821 1892 154 0 13 chr9 41690126 41690459 -76172168 - AluSx SINE Alu 0 312 1 2030 208 50 15 chr9 41690459 41690604 -76172023 - L1MB5 LINE L1 -353 5821 5683 2020 152 0 3 chr9 41690709 41691018 -76171609 + AluSx SINE Alu 1 308 -4 554 288 71 4 chr9 41691555 41691781 -76170846 - MIR SINE MIR -10 252 12 24 0 0 0 chr9 41692333 41692357 -76170270 + AT_rich Low_complexity Low_complexity 1 24 0 327 288 124 13 chr9 41692653 41692806 -76169821 - MIR SINE MIR -36 226 57 182 219 0 0 chr9 41693021 41693053 -76169574 - L2 LINE L2 -86 3186 3155 1046 268 99 77 chr9 41693116 41693792 -76168835 - MER21B LTR ERV1 -149 714 24 3573 230 68 29 chr9 41694027 41694907 -76167720 - MER21B-int LTR ERV1 -42 4149 3147 2161 108 0 14 chr9 41694907 41695086 -76167541 - AluSp SINE Alu 0 312 137 2291 86 0 10 chr9 41695086 41695388 -76167239 - AluY SINE Alu -12 299 1 2161 108 0 14 chr9 41695388 41695524 -76167103 - AluSp SINE Alu -175 137 1 3573 230 68 29 chr9 41695524 41696131 -76166496 - MER21B-int LTR ERV1 -1044 3147 2565 636 283 36 43 chr9 41696139 41696212 -76166415 - MER21B-int LTR ERV1 -1907 2284 2212 1096 189 45 139 chr9 41696212 41696365 -76166262 + MLT1A1 LTR MaLR 1 167 -198 2104 103 24 3 chr9 41696365 41696656 -76165971 + AluY SINE Alu 6 302 -9 1096 189 45 139 chr9 41696656 41696905 -76165722 + MLT1A1 LTR MaLR 167 365 0 636 283 36 43 chr9 41696905 41697107 -76165520 - MER21B-int LTR ERV1 -1979 2212 2011 * 1592 256 41 62 chr9 41697101 41697717 -76164910 - MER4B-int LTR ERV1 -2294 4464 3862 1734 172 0 0 chr9 41697840 41698148 -76164479 + L1P5 LINE L1 4758 5065 -1081 2514 67 0 13 chr9 41698150 41698463 -76164164 + AluY SINE Alu 1 309 -2 828 173 0 0 chr9 41698464 41698603 -76164024 + L1P5 LINE L1 5597 5735 -421 887 259 5 0 chr9 41699663 41699848 -76162779 + MER5A DNA MER1_type 4 189 0 1313 129 39 28 chr9 41700320 41700575 -76162052 - L1MA8 LINE L1 -11 6280 6023 2361 100 0 13 chr9 41700575 41700885 -76161742 - AluY SINE Alu -5 306 1 1105 81 7 0 chr9 41700885 41701021 -76161606 - AluSp SINE Alu -176 137 1 1833 248 58 9 chr9 41701021 41701627 -76161000 - MER4B-int LTR ERV1 -953 3238 2565 612 286 36 43 chr9 41701635 41701708 -76160919 - MER4B-int LTR ERV1 -1907 2284 2212 1096 189 45 139 chr9 41701708 41701861 -76160766 + MLT1A1 LTR MaLR 1 167 -198 2112 103 24 3 chr9 41701861 41702152 -76160475 + AluY SINE Alu 6 302 -9 1096 189 45 139 chr9 41702152 41702401 -76160226 + MLT1A1 LTR MaLR 167 365 0 612 286 36 43 chr9 41702401 41702603 -76160024 - MER4B-int LTR ERV1 -1979 2212 2011 * 4056 239 51 84 chr9 41702597 41704030 -76158597 - MER4B-int LTR ERV1 -2294 4464 3079 2388 152 15 2 chr9 41704407 41704802 -76157825 + MER57A LTR ERV1 1 400 -3 2257 77 0 14 chr9 41705627 41705946 -76156681 + AluY SINE Alu 1 315 0 291 122 0 0 chr9 41706565 41706614 -76156013 + (GA)n Simple_repeat Simple_repeat 2 50 0 2377 97 0 13 chr9 41708931 41709241 -76153386 + AluY SINE Alu 1 306 -5 1358 122 39 28 chr9 41709241 41709496 -76153131 + L1MA8 LINE L1 6023 6280 -11 881 259 5 0 chr9 41709968 41710153 -76152474 - MER5A DNA MER1_type 0 189 4 809 180 0 0 chr9 41711213 41711352 -76151275 - L1P5 LINE L1 -421 5735 5597 2438 77 0 13 chr9 41711353 41711666 -76150961 - AluY SINE Alu -2 309 1 1612 197 0 3 chr9 41711668 41711977 -76150650 - L1P5 LINE L1 -1081 5065 4758 511 174 0 0 chr9 41711976 41712068 -76150559 + L1PA16 LINE L1 5736 5827 -339 * 484 257 21 14 chr9 41712072 41712212 -76150415 + AluYa5 SINE Alu 2 142 -169 304 191 22 0 chr9 41712533 41712617 -76150010 + L1MB5 LINE L1 6043 6132 -42 1992 79 8 11 chr9 41712663 41712957 -76149670 + AluY SINE Alu 17 309 0 754 307 98 48 chr9 41713197 41713467 -76149160 + L1MEd LINE L1 56 311 -5808 2252 84 37 7 chr9 41713467 41713765 -76148862 - AluY SINE Alu -3 308 2 754 307 98 48 chr9 41713765 41714344 -76148283 + L1MEd LINE L1 311 947 -5172 388 244 33 72 chr9 41714606 41714751 -76147876 - MER41B LTR ERV1 -205 430 281 1964 125 0 7 chr9 41714751 41715038 -76147589 - AluSx SINE Alu -1 311 27 1352 208 0 63 chr9 41715036 41715353 -76147274 - AluJo SINE Alu -15 297 1 * 388 244 33 72 chr9 41715353 41715388 -76147239 - MER41B LTR ERV1 -669 4294967262 258 286 292 25 61 chr9 41715759 41716036 -76146591 + L1MEd LINE L1 2468 2734 -3395 1758 139 174 47 chr9 41716215 41716256 -76146371 - MSTA LTR MaLR 0 428 394 2560 43 0 13 chr9 41716256 41716558 -76146069 + AluY SINE Alu 1 298 -13 1758 139 174 47 chr9 41716558 41716896 -76145731 - MSTA LTR MaLR -34 394 1 301 296 119 87 chr9 41717033 41717171 -76145456 + L1MEd LINE L1 3613 3745 -2384 1633 181 41 24 chr9 41717171 41717509 -76145118 + L1MC2 LINE L1 5990 6333 -11 301 296 119 87 chr9 41717509 41717647 -76144980 + L1MEd LINE L1 3745 3898 -2231 2345 66 0 23 chr9 41717686 41717989 -76144638 + AluY SINE Alu 1 296 -15 26 82 0 0 chr9 41718242 41718303 -76144324 + AT_rich Low_complexity Low_complexity 1 61 0 35 54 0 0 chr9 41718326 41718382 -76144245 + AT_rich Low_complexity Low_complexity 1 56 0 475 332 68 9 chr9 41718390 41718610 -76144017 + MIR SINE MIR 2 234 -28 2340 106 0 0 chr9 41719235 41719537 -76143090 - AluSx SINE Alu -10 302 1 230 289 119 19 chr9 41719557 41719716 -76142911 + MIR SINE MIR 70 244 -18 330 26 0 0 chr9 41719879 41719918 -76142709 + (CA)n Simple_repeat Simple_repeat 2 40 0 2366 96 0 0 chr9 41720764 41721066 -76141561 - AluSx SINE Alu -10 302 1 521 264 30 20 chr9 41721422 41721623 -76141004 - LTR37B LTR ERV1 -57 411 209 2382 81 0 0 chr9 41721775 41722073 -76140554 + AluSp SINE Alu 1 298 -15 226 242 106 0 chr9 41723849 41723915 -76138712 - MER110 LTR ERV1 -9 482 410 282 196 0 0 chr9 41723937 41723988 -76138639 - MSTA LTR MaLR 0 428 378 1220 133 0 0 chr9 41723988 41724161 -76138466 - AluSg/x SINE Alu -8 304 132 1092 247 42 76 chr9 41724175 41724309 -76138318 - MER110 LTR ERV1 -70 421 284 2364 85 7 0 chr9 41724309 41724603 -76138024 + AluY SINE Alu 1 296 -15 1092 247 42 76 chr9 41724603 41724970 -76137657 - MER110 LTR ERV1 -207 284 8 2414 86 16 0 chr9 41725304 41725607 -76137020 + AluSc SINE Alu 1 308 -1 2745 149 29 2 chr9 41726128 41726506 -76136121 + MSTA LTR MaLR 1 392 -36 1831 143 7 18 chr9 41726506 41726837 -76135790 + AluSx SINE Alu 1 312 0 2745 149 29 2 chr9 41726837 41726875 -76135752 + MSTA LTR MaLR 392 428 0 432 0 0 0 chr9 41727069 41727117 -76135510 + (TA)n Simple_repeat Simple_repeat 1 48 0 2320 79 3 0 chr9 41727119 41727409 -76135218 - AluY SINE Alu -20 291 1 306 0 0 0 chr9 41727790 41727824 -76134803 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 2555 62 0 7 chr9 41727993 41728299 -76134328 + AluY SINE Alu 1 304 -7 2464 52 13 3 chr9 41728489 41728795 -76133832 + AluY SINE Alu 2 310 -1 1413 165 0 9 chr9 41729048 41729266 -76133361 + MER20 DNA MER1_type 4 219 0 2093 101 17 0 chr9 41729332 41729619 -76133008 + AluSc SINE Alu 1 292 -17 23 0 0 0 chr9 41729928 41729951 -76132676 + AT_rich Low_complexity Low_complexity 1 23 0 1913 170 57 24 chr9 41730437 41730820 -76131807 + MER31A LTR ERV1 1 396 -89 573 168 0 9 chr9 41730822 41730935 -76131692 + L1MA7 LINE L1 6178 6289 -2 373 265 12 3 chr9 41730955 41730984 -76131643 + L1M4 LINE L1 3712 3739 -2407 788 180 31 12 chr9 41730984 41731145 -76131482 + L1MA9 LINE L1 6149 6312 0 373 265 12 3 chr9 41731145 41731229 -76131398 + L1M4 LINE L1 3739 3828 -2318 2267 110 43 48 chr9 41731640 41732032 -76130595 + L1MA4A LINE L1 5913 6302 -1 330 26 0 0 chr9 41733010 41733049 -76129578 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1919 131 4 0 chr9 41733052 41733326 -76129301 - AluSg SINE Alu -35 275 1 859 312 41 35 chr9 41733552 41734062 -76128565 - L1ME3A LINE L1 -204 5966 5454 207 139 0 0 chr9 41734394 41734430 -76128197 + (CA)n Simple_repeat Simple_repeat 2 37 0 2388 70 0 0 chr9 41734454 41734741 -76127886 + AluY SINE Alu 22 308 -3 366 269 69 63 chr9 41734839 41735014 -76127613 + MIR SINE MIR 46 221 -41 2959 234 40 76 chr9 41735196 41735308 -76127319 - MER21-int LTR ERV1 -110 4081 3967 2585 118 75 5 chr9 41735308 41735724 -76126903 + LTR56 LTR ERV1 1 445 0 2959 234 40 76 chr9 41735724 41735776 -76126851 - MER21-int LTR ERV1 -224 3967 3915 2067 134 0 6 chr9 41735776 41736090 -76126537 - AluSx SINE Alu 0 312 1 2188 204 40 73 chr9 41736099 41736676 -76125951 - MER74A LTR ERVL 0 558 1 2959 234 40 76 chr9 41736676 41736774 -76125853 - MER21-int LTR ERV1 -284 3907 3807 2247 98 3 3 chr9 41736774 41737081 -76125546 - AluY SINE Alu -4 307 1 2959 234 40 76 chr9 41737081 41737750 -76124877 - MER21-int LTR ERV1 -384 3807 3172 2415 46 0 26 chr9 41738188 41738491 -76124136 + AluY SINE Alu 1 295 -16 206 216 20 39 chr9 41738788 41738839 -76123788 - L2 LINE L2 -14 3299 3250 1482 200 43 145 chr9 41739128 41739443 -76123184 + LTR38B LTR ERV1 1 140 -401 2660 36 0 0 chr9 41739443 41739744 -76122883 + AluY SINE Alu 1 301 -10 1482 200 43 145 chr9 41739744 41740109 -76122518 + LTR38B LTR ERV1 140 541 0 503 15 0 15 chr9 41740135 41740200 -76122427 + (TG)n Simple_repeat Simple_repeat 2 65 0 228 67 0 0 chr9 41740384 41740414 -76122213 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 1219 209 75 88 chr9 41741581 41741749 -76120878 - MER39 LTR ERV1 0 707 538 2406 57 0 0 chr9 41741749 41742059 -76120568 + AluY SINE Alu 1 310 0 1219 209 75 88 chr9 41742059 41742353 -76120274 - MER39 LTR ERV1 -169 538 250 2240 201 41 11 chr9 41742478 41742987 -76119640 - MER39 LTR ERV1 0 707 1 215 358 58 15 chr9 41743094 41743231 -76119396 + MIR SINE MIR 99 241 -21 187 204 0 111 chr9 41743202 41743256 -76119371 + L2 LINE L2 3258 3305 -8 * 212 267 0 17 chr9 41743860 41743920 -76118707 + (TATG)n Simple_repeat Simple_repeat 2 60 0 776 264 174 15 chr9 41744022 41744419 -76118208 - L2 LINE L2 -475 2839 2380 310 366 45 13 chr9 41745113 41745337 -76117290 - L1M4 LINE L1 -1002 5144 4914 2000 132 0 46 chr9 41745565 41745751 -76116876 + AluSx SINE Alu 1 167 -145 2794 95 125 5 chr9 41745751 41746151 -76116476 - LTR7 LTR ERV1 -2 448 1 2000 132 0 46 chr9 41746151 41746289 -76116338 + AluSx SINE Alu 167 310 -2 425 316 94 0 chr9 41746459 41746630 -76115997 + MIR SINE MIR 66 252 -10 225 0 0 0 chr9 41746705 41746730 -76115897 + (A)n Simple_repeat Simple_repeat 1 25 0 2296 96 0 17 chr9 41746904 41747206 -76115421 - AluY SINE Alu -14 297 1 705 204 52 12 chr9 41747245 41747417 -76115210 + MER96B DNA MER1_type? 1 179 -238 232 200 0 122 chr9 41747482 41747572 -76115055 - MER116 DNA Mariner -1 79 1 4253 142 81 68 chr9 41748309 41748651 -76113976 + MER4D LTR ERV1 1 337 -566 1987 129 38 0 chr9 41748651 41748938 -76113689 + AluSx SINE Alu 1 298 -14 4253 142 81 68 chr9 41748938 41749435 -76113192 + MER4D LTR ERV1 337 854 -49 3822 107 14 4 chr9 41749435 41749941 -76112686 - MER9 LTR ERVK 0 511 1 4253 142 81 68 chr9 41749941 41749992 -76112635 + MER4D LTR ERV1 854 903 0 1370 242 87 3 chr9 41750032 41750412 -76112215 + L1M4 LINE L1 4832 5243 -903 669 256 72 48 chr9 41750462 41750712 -76111915 + MIR SINE MIR 2 257 -5 1623 198 101 17 chr9 41751561 41751975 -76110652 - LTR48 LTR ERV1 -45 742 294 182 328 165 36 chr9 41752438 41752928 -76109699 - L2 LINE L2 -527 2787 2225 2143 119 7 0 chr9 41752928 41753221 -76109406 + AluSc SINE Alu 1 295 -14 182 328 165 36 chr9 41753221 41753252 -76109375 - L2 LINE L2 -1089 2225 2199 1198 246 39 21 chr9 41753609 41753939 -76108688 - MER4D LTR ERV1 0 903 568 1501 181 14 3 chr9 41754006 41754288 -76108339 - MER49 LTR ERV1 -638 285 1 198 194 45 0 chr9 41755112 41755179 -76107448 + GA-rich Low_complexity Low_complexity 3 72 0 418 334 72 40 chr9 41755703 41755950 -76106677 - MIR SINE MIR -6 256 2 218 371 14 0 chr9 41756969 41757039 -76105588 - MIR SINE MIR -187 75 5 3123 137 98 84 chr9 41757908 41758563 -76104064 + MER4A LTR ERV1 1 664 0 746 206 70 89 chr9 41758563 41758960 -76103667 + MER4C LTR ERV1 149 699 0 647 257 29 0 chr9 41760005 41760176 -76102451 - MER5B DNA MER1_type 0 178 3 509 80 13 0 chr9 41760208 41760283 -76102344 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 2237 100 10 0 chr9 41760283 41760573 -76102054 - AluSp SINE Alu -20 293 1 1620 83 0 0 chr9 41761188 41761392 -76101235 + AluY SINE Alu 1 204 -107 2090 96 27 14 chr9 41761404 41761696 -76100931 + AluY SINE Alu 3 298 -13 2188 100 4 0 chr9 41762596 41762917 -76099710 - AluY SINE Alu 0 322 1 228 191 79 63 chr9 41764397 41764460 -76098167 + LTR33A LTR ERVL 460 523 0 288 313 62 51 chr9 41764830 41764891 -76097736 + MER5B DNA MER1_type 1 60 -118 2040 127 3 0 chr9 41764891 41765183 -76097444 + AluSx SINE Alu 1 293 -19 288 313 62 51 chr9 41765183 41765297 -76097330 + MER5B DNA MER1_type 60 178 0 17474 210 28 11 chr9 41765873 41768129 -76094498 + L1PA15 LINE L1 1319 3536 -3280 1983 66 92 4 chr9 41768129 41768400 -76094227 - AluY SINE Alu -16 295 1 17474 210 28 11 chr9 41768400 41771560 -76091067 + L1PA15 LINE L1 3536 6816 0 239 106 43 0 chr9 41771894 41771941 -76090686 + A-rich Low_complexity Low_complexity 2 50 0 1079 227 33 94 chr9 41773794 41774147 -76088480 + MLT1A2 LTR MaLR 1 329 -45 2423 70 0 16 chr9 41774147 41774459 -76088168 - AluY SINE Alu -4 307 1 1079 227 33 94 chr9 41774459 41774497 -76088130 + MLT1A2 LTR MaLR 329 368 -6 2463 63 0 0 chr9 41776072 41776359 -76086268 - AluY SINE Alu -24 287 1 821 259 8 59 chr9 41776449 41776544 -76086083 + MIR SINE MIR 2 100 -162 3050 148 25 16 chr9 41776544 41777029 -76085598 + LTR45B LTR ERV1 1 489 0 821 259 8 59 chr9 41777029 41777169 -76085458 + MIR SINE MIR 100 225 -37 23 33 0 0 chr9 41777555 41777585 -76085042 + AT_rich Low_complexity Low_complexity 1 30 0 2346 68 0 0 chr9 41777746 41778057 -76084570 + AluY SINE Alu 1 311 0 650 296 17 6 chr9 41779017 41779196 -76083431 + MLT1J LTR MaLR 10 190 -321 13527 187 16 10 chr9 41779205 41781800 -76080827 + L1PA13 LINE L1 1 2627 -4170 1603 199 118 97 chr9 41781910 41782623 -76080004 + LTR1B LTR ERV1 18 745 -81 3656 252 42 33 chr9 41782710 41783952 -76078675 + L1MC2 LINE L1 3818 5070 -1076 820 188 0 7 chr9 41783952 41784096 -76078531 - FRAM SINE Alu -12 164 22 2937 199 109 11 chr9 41784164 41784961 -76077666 + L1MC2 LINE L1 5132 6001 -343 209 385 19 10 chr9 41785320 41785424 -76077203 - MIR3 SINE MIR -10 198 94 378 274 29 73 chr9 41785694 41785810 -76076817 - L2 LINE L2 0 3313 3208 2136 124 0 7 chr9 41785810 41786108 -76076519 + AluSq SINE Alu 1 296 -17 378 274 29 73 chr9 41786108 41786195 -76076432 - L2 LINE L2 -105 3208 3119 4611 149 29 59 chr9 41786285 41786311 -76076316 - L1MA9 LINE L1 -35 6277 6252 2229 106 10 0 chr9 41786311 41786614 -76076013 + AluSq SINE Alu 1 306 -7 4611 149 29 59 chr9 41786614 41786709 -76075918 - L1MA9 LINE L1 -60 6252 6156 254 29 29 0 chr9 41786709 41786744 -76075883 + (TG)n Simple_repeat Simple_repeat 1 36 0 4611 149 29 59 chr9 41786744 41787532 -76075095 - L1MA9 LINE L1 -156 6156 5395 5014 186 139 11 chr9 41787550 41788294 -76074333 - L1MA9 LINE L1 -754 5392 4745 2285 88 3 16 chr9 41788294 41788599 -76074028 - AluSp SINE Alu -12 301 1 5014 186 139 11 chr9 41788599 41789064 -76073563 - L1MA9 LINE L1 -1401 4745 4048 2841 226 249 10 chr9 41789053 41791063 -76071564 - L1M4c LINE L1 -4529 2508 1 * 22 35 0 0 chr9 41791352 41791381 -76071246 + AT_rich Low_complexity Low_complexity 1 29 0 2557 53 0 0 chr9 41792242 41792545 -76070082 + AluY SINE Alu 1 303 -8 1600 167 0 16 chr9 41792554 41792811 -76069816 + AluJo SINE Alu 1 253 -59 317 211 14 0 chr9 41793915 41793986 -76068641 - MER74B LTR ERVL -501 121 50 1151 249 53 58 chr9 41793986 41794172 -76068455 + L1ME1 LINE L1 5671 5856 -478 2209 85 3 7 chr9 41794172 41794489 -76068138 + AluY SINE Alu 1 316 0 1151 249 53 58 chr9 41794489 41794807 -76067820 + L1ME1 LINE L1 5856 6333 -1 180 293 17 0 chr9 41794908 41794966 -76067661 + L2 LINE L2 2301 2359 -955 404 214 102 31 chr9 41795001 41795099 -76067528 + MER63 DNA MER1_type 3 733 -329 198 357 135 16 chr9 41795141 41795393 -76067234 + L2 LINE L2 3020 3301 -12 * 373 300 109 93 chr9 41795376 41796035 -76066592 - L2 LINE L2 -9 3263 2599 2316 135 125 16 chr9 41796035 41796420 -76066207 + MSTA LTR MaLR 1 427 -1 373 300 109 93 chr9 41796420 41796685 -76065942 - L2 LINE L2 -673 2599 2340 23 0 0 0 chr9 41796935 41796958 -76065669 + AT_rich Low_complexity Low_complexity 1 23 0 2885 101 13 0 chr9 41796963 41797359 -76065268 + L1PA13 LINE L1 5760 6160 -3 2305 80 7 7 chr9 41797365 41797654 -76064973 + AluSg SINE Alu 1 289 -21 2390 91 0 0 chr9 41798469 41798778 -76063849 + AluY SINE Alu 1 309 -2 201 95 0 48 chr9 41799459 41799477 -76063150 + (CAA)n Simple_repeat Simple_repeat 2 19 -22 2275 75 16 20 chr9 41799477 41799782 -76062845 + AluY SINE Alu 1 304 -7 201 95 0 48 chr9 41799782 41799805 -76062822 + (CAA)n Simple_repeat Simple_repeat 19 41 0 272 319 166 12 chr9 41801012 41801175 -76061452 + MIR3 SINE MIR 18 205 -3 1495 163 82 12 chr9 41801214 41801818 -76060809 - MER39 LTR ERV1 0 707 1 4531 189 77 13 chr9 41803140 41803706 -76058921 - L1MC2 LINE L1 -109 6235 5707 2301 99 0 0 chr9 41803706 41803998 -76058629 + AluSc SINE Alu 1 292 -17 4531 189 77 13 chr9 41803998 41805123 -76057504 - L1MC2 LINE L1 -637 5707 4443 6245 190 14 23 chr9 41805315 41806461 -76056166 + L1PA13 LINE L1 2 1137 -5650 2470 65 3 3 chr9 41807797 41808104 -76054523 + AluY SINE Alu 1 307 -4 540 178 0 19 chr9 41808323 41808430 -76054197 - MER53 DNA DNA -84 105 1 2478 77 0 3 chr9 41809160 41809472 -76053155 + AluY SINE Alu 1 311 0 227 340 46 56 chr9 41809560 41809757 -76052870 + L3 LINE CR1 1381 1575 -2 2448 86 3 3 chr9 41810320 41810633 -76051994 - AluSq SINE Alu 0 313 1 387 229 34 42 chr9 41810991 41811109 -76051518 - MER20 DNA MER1_type -4 215 99 2228 79 14 3 chr9 41811239 41811531 -76051096 + AluSc SINE Alu 1 295 -14 1973 185 117 76 chr9 41811908 41812406 -76050221 - MLT2B1 LTR ERVL 0 520 3 2838 16 0 0 chr9 41812569 41812876 -76049751 + AluYb8 SINE Alu 1 307 -11 1058 240 132 17 chr9 41813534 41813950 -76048677 - MLT1C LTR MaLR 0 467 4 1422 221 45 40 chr9 41814540 41814939 -76047688 - MLT1C LTR MaLR -8 459 59 410 207 76 83 chr9 41815711 41815856 -76046771 + MLT1H LTR MaLR 404 547 -2 266 191 19 76 chr9 41816564 41816669 -76045958 + LTR41 LTR ERVL 662 760 -13 772 180 64 0 chr9 41817193 41817365 -76045262 - L1MA7 LINE L1 -2 6289 6107 225 245 0 0 chr9 41817488 41817537 -76045090 + L2 LINE L2 3264 3312 -1 271 316 209 11 chr9 41817686 41817863 -76044764 - MIR SINE MIR 0 262 51 2098 107 24 0 chr9 41817878 41818169 -76044458 + AluSq SINE Alu 1 298 -15 430 282 43 19 chr9 41818756 41818965 -76043662 + L1ME4a LINE L1 5730 5943 -178 270 0 0 0 chr9 41819143 41819173 -76043454 + (CA)n Simple_repeat Simple_repeat 1 30 0 32 0 0 0 chr9 41820680 41820712 -76041915 + AT_rich Low_complexity Low_complexity 1 32 0 339 25 0 0 chr9 41820911 41820951 -76041676 + (TG)n Simple_repeat Simple_repeat 1 40 0 686 272 72 72 chr9 41820955 41821370 -76041257 - L2 LINE L2 -49 3264 2850 224 241 0 0 chr9 41822456 41822510 -76040117 + (TA)n Simple_repeat Simple_repeat 1 54 0 2092 90 0 48 chr9 41823047 41823357 -76039270 - AluSx SINE Alu -17 295 1 2517 49 3 0 chr9 41823632 41823936 -76038691 - AluY SINE Alu -6 305 1 2188 125 0 0 chr9 41824705 41825008 -76037619 + AluSq SINE Alu 1 303 -10 21 71 0 0 chr9 41825008 41825050 -76037577 + AT_rich Low_complexity Low_complexity 1 42 0 2417 176 58 0 chr9 41825522 41825949 -76036678 - MER70A LTR ERVL -20 452 1 2448 60 17 0 chr9 41826950 41827249 -76035378 - AluSp SINE Alu -9 304 1 2076 164 53 43 chr9 41827984 41828228 -76034399 + L1MDa LINE L1 1846 2086 -4454 2150 79 18 4 chr9 41828228 41828530 -76034097 - AluY SINE Alu 0 306 1 2076 164 53 43 chr9 41828530 41828870 -76033757 + L1MDa LINE L1 2086 2558 -3982 600 252 248 0 chr9 41829042 41829288 -76033339 + L1MD2 LINE L1 6043 6349 -10 329 304 66 33 chr9 41829332 41829513 -76033114 + L1MEc LINE L1 1630 1816 -4580 1534 207 21 24 chr9 41829546 41829928 -76032699 + L1MEc LINE L1 2521 2901 -3314 3993 162 18 34 chr9 41829991 41830779 -76031848 - LTR1 LTR ERV1 0 785 11 423 214 0 48 chr9 41830791 41830917 -76031710 + Charlie5 DNA MER1_type 2416 2535 -77 1953 216 54 14 chr9 41830918 41831512 -76031115 + L1MEc LINE L1 2896 3513 -2702 2227 151 31 26 chr9 41831557 41831661 -76030966 + L1M4c LINE L1 1 103 -6281 2136 93 3 10 chr9 41831661 41831961 -76030666 - AluY SINE Alu -13 298 1 2227 151 31 26 chr9 41831961 41832247 -76030380 + L1M4c LINE L1 103 393 -5991 255 152 22 0 chr9 41832233 41832279 -76030348 + L1MB4 LINE L1 5237 5283 -863 * 4081 187 19 54 chr9 41832315 41832346 -76030281 + L1MB4 LINE L1 5258 5289 -891 2165 146 128 13 chr9 41832346 41832730 -76029897 + MSTA LTR MaLR 1 428 0 4081 187 19 54 chr9 41832730 41833514 -76029113 + L1MB4 LINE L1 5289 6099 -81 2204 72 4 4 chr9 41833514 41833792 -76028835 + AluY SINE Alu 1 278 -33 414 0 0 0 chr9 41833797 41833843 -76028784 + (TA)n Simple_repeat Simple_repeat 2 47 0 4081 187 19 54 chr9 41833843 41833977 -76028650 + L1MB4 LINE L1 6103 6180 0 1162 206 23 68 chr9 41834152 41834462 -76028165 + MLT2B1 LTR ERVL 1 296 -118 27 29 0 0 chr9 41834532 41834566 -76028061 + AT_rich Low_complexity Low_complexity 1 34 0 468 296 106 12 chr9 41834684 41835340 -76027287 + L1MB7 LINE L1 2131 2928 -3218 3819 216 55 54 chr9 41835456 41835697 -76026930 + L1MB7 LINE L1 4146 4385 -1799 1809 91 95 0 chr9 41835697 41835949 -76026678 + L1PB3 LINE L1 5876 6151 -3 3819 216 55 54 chr9 41835949 41836120 -76026507 + L1MB7 LINE L1 4385 4554 -1630 207 0 0 0 chr9 41836120 41836143 -76026484 + (TTG)n Simple_repeat Simple_repeat 2 24 0 885 104 0 24 chr9 41836145 41836270 -76026357 - AluSp/q SINE Alu -18 295 174 3819 216 55 54 chr9 41836270 41837357 -76025270 + L1MB7 LINE L1 4554 5668 -516 2264 90 7 3 chr9 41837357 41837647 -76024980 + AluSg SINE Alu 1 291 -19 3819 216 55 54 chr9 41837647 41838165 -76024462 + L1MB7 LINE L1 5668 6184 0 572 259 24 0 chr9 41838329 41838495 -76024132 + L1M4 LINE L1 4222 4391 -1755 658 135 110 1 chr9 41838495 41838640 -76023987 + L1PB3 LINE L1 5876 6043 -125 2552 49 0 3 chr9 41838659 41838965 -76023662 - AluY SINE Alu -6 305 1 433 278 83 33 chr9 41839271 41839451 -76023176 + HAL1 LINE L1 8 196 -2311 1735 105 4 0 chr9 41839887 41840115 -76022512 - AluSc SINE Alu -14 295 67 291 281 48 68 chr9 41840117 41840263 -76022364 + LTR16C LTR ERVL 347 489 -2 296 309 27 37 chr9 41840316 41840504 -76022123 + HAL1 LINE L1 2031 2216 -291 3342 156 27 9 chr9 41840520 41841084 -76021543 + LTR69 LTR ERVL 8 581 -7 2287 117 0 0 chr9 41841335 41841777 -76020850 + AluSc SINE Alu 1 442 0 3524 172 5 4 chr9 41842143 41842696 -76019931 - MER41D LTR ERV1 -2 555 2 24 0 0 0 chr9 41842893 41842917 -76019710 + AT_rich Low_complexity Low_complexity 1 24 0 2087 115 37 0 chr9 41843313 41843431 -76019196 + AluSc SINE Alu 3 115 -194 234 0 0 0 chr9 41843431 41843457 -76019170 + (CA)n Simple_repeat Simple_repeat 2 27 0 2087 115 37 0 chr9 41843457 41843634 -76018993 + AluSc SINE Alu 115 309 0 205 261 0 0 chr9 41843718 41843764 -76018863 + L3 LINE CR1 1426 1471 -106 2421 60 3 13 chr9 41843788 41844089 -76018538 + AluY SINE Alu 1 298 -13 1015 278 115 17 chr9 41845099 41845516 -76017111 - MLT1E2 LTR MaLR -58 568 111 2630 55 0 0 chr9 41845844 41846154 -76016473 + AluY SINE Alu 1 310 -1 2111 79 52 24 chr9 41846454 41846745 -76015882 + AluY SINE Alu 1 299 -12 749 255 85 88 chr9 41846773 41847054 -76015573 + MLT1I LTR MaLR 54 335 -74 2402 96 3 0 chr9 41847054 41847356 -76015271 - AluSg SINE Alu -7 303 1 749 255 85 88 chr9 41847356 41847427 -76015200 + MLT1I LTR MaLR 335 405 -4 1831 188 65 31 chr9 41847744 41848159 -76014468 + MLT2B1 LTR ERVL 1 429 -91 3168 182 3 46 chr9 41848246 41848842 -76013785 + ERVL LTR ERVL 4814 5383 -381 2516 65 0 7 chr9 41848842 41849151 -76013476 - AluY SINE Alu -4 307 1 3168 182 3 46 chr9 41849151 41849186 -76013441 + ERVL LTR ERVL 5383 5418 -346 327 85 0 0 chr9 41849190 41849237 -76013390 + (TG)n Simple_repeat Simple_repeat 2 48 0 311 342 83 22 chr9 41849392 41849620 -76013007 - L2 LINE L2 -2919 395 154 244 308 131 0 chr9 41850593 41850723 -76011904 + MIR3 SINE MIR 56 202 -6 724 150 176 13 chr9 41851618 41851771 -76010856 + L1MB5 LINE L1 466 643 -6846 721 274 15 75 chr9 41851803 41852215 -76010412 + L1MB5 LINE L1 1173 1559 -5930 2218 255 79 26 chr9 41852221 41853040 -76009587 + L1MB5 LINE L1 2565 3427 -4138 563 261 29 19 chr9 41853018 41853225 -76009402 + L1MB5 LINE L1 3769 3977 -3588 * 1069 194 35 40 chr9 41853249 41853589 -76009038 + MSTB1 LTR MaLR 4 432 0 1409 217 68 28 chr9 41853591 41853704 -76008923 + L1MB5 LINE L1 3974 4081 -3484 2427 55 0 19 chr9 41853704 41854012 -76008615 + AluY SINE Alu 1 302 -9 1409 217 68 28 chr9 41854012 41854322 -76008305 + L1MB5 LINE L1 4081 4414 -3151 2466 80 0 0 chr9 41854322 41854621 -76008006 + AluSx SINE Alu 1 299 -13 882 222 22 17 chr9 41854621 41854851 -76007776 + L1MB5 LINE L1 4770 5000 -2565 * 6752 201 20 14 chr9 41854844 41856348 -76006279 - L1PB2 LINE L1 -2236 5329 3817 7052 170 9 17 chr9 41856349 41856802 -76005825 + L1PB2 LINE L1 5348 5803 -1767 2176 135 0 3 chr9 41856802 41857114 -76005513 + AluSx SINE Alu 1 311 -1 7052 170 9 17 chr9 41857114 41858336 -76004291 + L1PB2 LINE L1 5803 7005 -565 2404 80 0 6 chr9 41858377 41858690 -76003937 - AluY SINE Alu 0 311 1 4228 92 21 9 chr9 41858690 41859263 -76003364 + L1PB2 LINE L1 6989 7568 -2 6766 192 47 31 chr9 41859269 41859676 -76002951 + L1MB5 LINE L1 4979 5378 -2215 2035 121 0 36 chr9 41859676 41859982 -76002645 + AluSg SINE Alu 1 295 -15 6766 192 47 31 chr9 41859982 41862139 -76000488 + L1MB5 LINE L1 5378 7587 -6 6344 61 2 24 chr9 41862224 41863616 -75999011 + L1PA7 LINE L1 4774 6134 -20 285 29 0 0 chr9 41863616 41863650 -75998977 + (TG)n Simple_repeat Simple_repeat 2 35 0 366 325 43 11 chr9 41863658 41863846 -75998781 + L1M4 LINE L1 4260 4453 -1693 23 33 0 0 chr9 41864258 41864288 -75998339 + AT_rich Low_complexity Low_complexity 1 30 0 2294 88 0 14 chr9 41864311 41864606 -75998021 + AluY SINE Alu 1 291 -20 22 35 0 0 chr9 41865180 41865209 -75997418 + AT_rich Low_complexity Low_complexity 1 29 0 2570 49 0 0 chr9 41866110 41866416 -75996211 - AluY SINE Alu -5 306 1 306 206 31 19 chr9 41866491 41866589 -75996038 - L1ME LINE L1 -355 5766 5668 2469 62 0 13 chr9 41866589 41866894 -75995733 - AluY SINE Alu -10 301 1 306 206 31 19 chr9 41866894 41866927 -75995700 - L1ME LINE L1 -453 5668 5637 2474 55 3 3 chr9 41867077 41867387 -75995240 - AluY SINE Alu -1 310 1 446 194 21 11 chr9 41867643 41867736 -75994891 + MER20 DNA MER1_type 1 94 -125 2233 66 3 35 chr9 41868549 41868867 -75993760 + AluY SINE Alu 1 308 -3 4309 190 50 30 chr9 41868881 41870512 -75992115 - L1MB2 LINE L1 -18 6389 4791 2032 127 0 10 chr9 41870512 41870831 -75991796 - AluJb SINE Alu 0 312 1 4309 190 50 30 chr9 41870831 41871205 -75991422 - L1MB2 LINE L1 -1616 4791 4340 2373 55 3 35 chr9 41871205 41871515 -75991112 + AluY SINE Alu 1 300 -11 4309 190 50 30 chr9 41871515 41871545 -75991082 - L1MB2 LINE L1 -2067 4340 4312 39604 60 7 2 chr9 41871554 41877676 -75984951 - L1PA5 LINE L1 0 6154 2 308 191 26 29 chr9 41877672 41877765 -75984862 - L1MB2 LINE L1 -2058 4324 4233 * 5018 232 52 29 chr9 41877815 41878747 -75983880 - L1MB2 LINE L1 -2134 4248 3339 2204 101 7 0 chr9 41878747 41879043 -75983584 - AluY SINE Alu -13 298 1 5018 232 52 29 chr9 41879043 41880313 -75982314 - L1MB2 LINE L1 -3043 3339 2052 353 268 70 66 chr9 41880315 41880558 -75982069 - L1MB2 LINE L1 -5896 417 174 5224 171 10 15 chr9 41881348 41882411 -75980216 + L1 LINE L1 3510 4567 -1579 2081 93 0 4 chr9 41882486 41882764 -75979863 + AluSg SINE Alu 1 277 -33 1386 177 14 7 chr9 41883278 41883561 -75979066 + MER49 LTR ERV1 1 285 -638 1065 249 39 21 chr9 41883628 41883958 -75978669 + MER4D LTR ERV1 568 903 0 251 319 33 66 chr9 41884315 41884346 -75978281 + L2 LINE L2 2199 2229 -1085 2024 137 7 3 chr9 41884346 41884638 -75977989 - AluSc SINE Alu -16 293 1 251 319 33 66 chr9 41884638 41884847 -75977780 + L2 LINE L2 2229 2431 -883 919 209 72 11 chr9 41885236 41885660 -75976967 - MLT1D LTR MaLR -4 501 5 448 332 93 37 chr9 41885832 41886208 -75976419 - L1MC4 LINE L1 -906 6987 6479 284 242 85 7 chr9 41886397 41886550 -75976077 - L1MC4a LINE L1 -1577 6231 6067 264 217 28 38 chr9 41886562 41886668 -75975959 + (TG)n Simple_repeat Simple_repeat 2 106 0 193 175 8 56 chr9 41886689 41886815 -75975812 + (TG)n Simple_repeat Simple_repeat 1 120 0 195 138 23 46 chr9 41886904 41886991 -75975636 + (TG)n Simple_repeat Simple_repeat 2 86 0 353 167 7 61 chr9 41887055 41887515 -75975112 + (TG)n Simple_repeat Simple_repeat 1 434 0 331 199 20 40 chr9 41887534 41887839 -75974788 + (TG)n Simple_repeat Simple_repeat 1 298 0 1701 236 106 37 chr9 41888067 41888746 -75973881 + L1MCa LINE L1 2 727 -5699 1227 30 0 0 chr9 41888747 41888881 -75973746 + AluY SINE Alu 1 134 -177 2378 64 20 7 chr9 41888882 41889180 -75973447 + AluY SINE Alu 1 302 -9 285 89 22 0 chr9 41889722 41889767 -75972860 - Alu SINE Alu -19 281 236 2506 60 0 0 chr9 41890697 41890997 -75971630 + AluY SINE Alu 1 300 -11 1720 209 82 19 chr9 41891000 41891697 -75970930 - L1MCb LINE L1 -4851 1194 634 29 28 0 0 chr9 41891697 41891733 -75970894 + AT_rich Low_complexity Low_complexity 1 36 0 2041 141 10 0 chr9 41892062 41892367 -75970260 + AluSx SINE Alu 1 308 -4 2099 110 0 32 chr9 41892963 41893271 -75969356 + AluY SINE Alu 1 298 -13 1521 211 64 44 chr9 41894587 41895043 -75967584 - LTR40c LTR ERVL 0 465 1 238 329 14 0 chr9 41895143 41895216 -75967411 + MIR3 SINE MIR 126 199 -9 680 194 0 61 chr9 41895300 41895465 -75967162 + MER3 DNA MER1_type 5 159 -50 2323 77 0 62 chr9 41895468 41895791 -75966836 - AluY SINE Alu -8 303 1 1194 262 122 17 chr9 41896149 41896672 -75965955 - LTR48B LTR ERV1 -2 642 65 2534 63 0 0 chr9 41896673 41896974 -75965653 + AluY SINE Alu 1 301 -10 562 159 38 8 chr9 41897134 41897266 -75965361 + LTR37B LTR ERV1 333 468 0 415 324 112 22 chr9 41897343 41897800 -75964827 - L1M4 LINE L1 -991 5155 4658 598 231 100 6 chr9 41897979 41898139 -75964488 + MER5B DNA MER1_type 2 176 -2 2109 137 16 0 chr9 41900026 41900333 -75962294 + AluSx SINE Alu 1 312 0 2191 98 14 0 chr9 41900336 41900623 -75962004 + AluY SINE Alu 20 310 -1 2331 104 0 0 chr9 41900625 41900932 -75961695 + AluSq SINE Alu 1 307 -6 392 231 68 41 chr9 41901481 41901628 -75960999 - MER58A DNA MER1_type -29 195 45 301 333 0 0 chr9 41903079 41903181 -75959446 - MER94 DNA DNA -32 102 1 1764 151 112 17 chr9 41904073 41904395 -75958232 + MLT2D LTR ERVL 17 378 -36 369 75 0 0 chr9 41904395 41904448 -75958179 + (CA)n Simple_repeat Simple_repeat 2 54 0 1764 151 112 17 chr9 41904448 41904483 -75958144 + MLT2D LTR ERVL 378 408 -6 21 36 0 0 chr9 41904687 41904715 -75957912 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 41904799 41904822 -75957805 + AT_rich Low_complexity Low_complexity 1 23 0 1306 180 141 0 chr9 41906034 41906289 -75956338 + AluJb SINE Alu 1 291 -11 440 219 48 119 chr9 41907705 41907915 -75954712 + MER58A DNA MER1_type 1 195 -29 2096 122 3 3 chr9 41908462 41908765 -75953862 - AluSq SINE Alu -8 305 3 1904 100 77 0 chr9 41908770 41909029 -75953598 - AluY SINE Alu -13 298 20 2066 136 16 3 chr9 41909032 41909340 -75953287 - AluSx SINE Alu 0 312 1 551 231 100 6 chr9 41911231 41911391 -75951236 - MER5B DNA MER1_type -2 176 2 416 310 85 21 chr9 41911570 41911899 -75950728 + L1M4 LINE L1 4658 5007 -1139 604 144 38 8 chr9 41912104 41912236 -75950391 - LTR37B LTR ERV1 0 468 333 285 273 13 0 chr9 41912288 41912365 -75950262 + L2 LINE L2 3186 3263 -9 229 300 55 36 chr9 41913395 41913505 -75949122 + MIR SINE MIR 32 143 -119 518 193 201 31 chr9 41914194 41914285 -75948342 - LTR37A LTR ERV1 -13 413 339 2337 189 127 17 chr9 41914285 41914925 -75947702 - MER67C LTR ERV1 0 710 1 518 193 201 31 chr9 41914925 41915092 -75947535 - LTR37A LTR ERV1 -87 339 111 777 173 189 86 chr9 41915660 41915948 -75946679 - LTR37A LTR ERV1 0 426 90 2491 74 0 3 chr9 41915948 41916258 -75946369 + AluY SINE Alu 1 309 -2 777 173 189 86 chr9 41916258 41916340 -75946287 - LTR37A LTR ERV1 -336 90 18 1915 144 3 3 chr9 41917010 41917317 -75945310 - AluSx SINE Alu 0 308 2 853 219 127 4 chr9 41917384 41917644 -75944983 - LTR37A LTR ERV1 -57 369 78 1255 182 87 33 chr9 41918979 41919314 -75943313 + MLT1A1 LTR MaLR 11 363 -2 641 250 106 40 chr9 41920046 41920332 -75942295 + MER93b LTR ERV1 92 370 -3 2265 106 0 3 chr9 41920410 41920722 -75941905 - AluY SINE Alu 0 311 1 6833 177 20 21 chr9 41921279 41922403 -75940224 - L1PA15 LINE L1 -2 6163 5017 1529 151 81 28 chr9 41922403 41922567 -75940060 - AluJo SINE Alu -12 300 113 375 23 0 0 chr9 41922567 41922611 -75940016 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1529 151 81 28 chr9 41922611 41922730 -75939897 - AluJo SINE Alu -199 113 2 6833 177 20 21 chr9 41922730 41923815 -75938812 - L1PA15 LINE L1 -1148 5017 3933 1512 215 111 35 chr9 41923905 41924417 -75938210 + MLT1E2 LTR MaLR 11 561 -65 405 0 0 0 chr9 41924590 41924635 -75937992 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1370 109 0 43 chr9 41924635 41924846 -75937781 + AluSq SINE Alu 3 204 -109 256 132 59 0 chr9 41924852 41924920 -75937707 + (TA)n Simple_repeat Simple_repeat 2 73 0 879 167 105 29 chr9 41925228 41925438 -75937189 + MLT1B LTR MaLR 1 226 -164 26 0 0 0 chr9 41925581 41925607 -75937020 + AT_rich Low_complexity Low_complexity 1 26 0 839 194 14 28 chr9 41925607 41925824 -75936803 - L1MA9 LINE L1 -25 6287 6074 2257 92 0 29 chr9 41926619 41926925 -75935702 + AluY SINE Alu 1 297 -14 1491 164 47 60 chr9 41927617 41927916 -75934711 - AluJb SINE Alu -17 295 1 21 0 0 0 chr9 41928572 41928593 -75934034 + AT_rich Low_complexity Low_complexity 1 21 0 2041 141 10 0 chr9 41930406 41930711 -75931916 + AluSx SINE Alu 1 308 -4 2103 89 0 40 chr9 41931299 41931602 -75931025 + AluY SINE Alu 1 291 -20 2413 77 0 10 chr9 41932681 41932992 -75929635 - AluY SINE Alu -3 308 1 439 193 184 0 chr9 41932996 41933110 -75929517 + MER58C DNA MER1_type 81 215 0 2173 64 44 24 chr9 41934622 41934920 -75927707 + AluY SINE Alu 1 304 -7 2368 67 7 0 chr9 41935440 41935738 -75926889 + AluY SINE Alu 1 300 -11 2743 91 3 3 chr9 41937006 41937370 -75925257 - THE1B LTR MaLR 0 364 1 204 40 0 0 chr9 41937546 41937571 -75925056 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2404 53 0 0 chr9 41937574 41937856 -75924771 - AluY SINE Alu -29 282 1 219 233 0 0 chr9 41938333 41938376 -75924251 + GA-rich Low_complexity Low_complexity 3 45 0 786 198 31 5 chr9 41939189 41939381 -75923246 - L1 LINE L1 -1412 4734 4538 185 196 103 112 chr9 41940466 41940573 -75922054 + L3 LINE CR1 1469 1574 -3 614 265 118 0 chr9 41940623 41940827 -75921800 - MIR SINE MIR -13 249 22 624 274 24 0 chr9 41940842 41941006 -75921621 + MER5A DNA MER1_type 17 184 -5 2424 89 0 0 chr9 41941571 41941873 -75920754 - AluY SINE Alu -9 302 1 22 35 0 0 chr9 41943434 41943463 -75919164 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr9 41943857 41943881 -75918746 + AT_rich Low_complexity Low_complexity 1 24 0 2377 94 0 7 chr9 41944218 41944527 -75918100 + AluSc SINE Alu 1 307 -2 240 311 133 22 chr9 41944982 41945117 -75917510 - MIR3 SINE MIR -17 191 42 3594 178 45 21 chr9 41945290 41945771 -75916856 + L1MCa LINE L1 49 556 -5870 275 26 51 0 chr9 41945771 41945810 -75916817 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 3594 178 45 21 chr9 41945810 41946086 -75916541 + L1MCa LINE L1 556 824 -5602 464 209 18 27 chr9 41946092 41946202 -75916425 + FLAM_C SINE Alu 22 130 -13 1097 161 0 0 chr9 41946244 41946406 -75916221 + AluJb SINE Alu 142 303 -9 3395 119 91 56 chr9 41946410 41946458 -75916169 + L1MCa LINE L1 836 881 -5545 2348 86 0 7 chr9 41946458 41946762 -75915865 + AluY SINE Alu 10 311 0 3395 119 91 56 chr9 41946762 41947355 -75915272 + L1MCa LINE L1 881 1452 -4974 2141 117 3 3 chr9 41947355 41947645 -75914982 - AluSp SINE Alu -23 290 1 3395 119 91 56 chr9 41947645 41947780 -75914847 + L1MCa LINE L1 1452 1646 -4780 180 0 0 0 chr9 41947780 41947800 -75914827 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 3395 119 91 56 chr9 41947800 41947843 -75914784 + L1MCa LINE L1 1646 1686 -4740 1575 149 97 49 chr9 41947997 41948089 -75914538 + MER47A DNA MER2_type 1 87 -2236 2197 88 0 7 chr9 41948089 41948415 -75914212 - AluSc SINE Alu 0 324 1 1575 149 97 49 chr9 41948415 41948670 -75913957 + MER47A DNA MER2_type 87 366 0 661 147 0 0 chr9 41948885 41948994 -75913633 + FRAM SINE Alu 60 168 -8 242 245 0 19 chr9 41948999 41949052 -75913575 + MIR3 SINE MIR 147 198 -10 2258 97 0 19 chr9 41949535 41949846 -75912781 + AluSx SINE Alu 1 305 -7 668 164 9 0 chr9 41952126 41952236 -75910391 + AluJb SINE Alu 185 295 -17 2116 74 0 7 chr9 41952449 41952719 -75909908 - AluSx SINE Alu -44 268 1 323 313 62 36 chr9 41952817 41953012 -75909615 + MIR SINE MIR 2 201 -61 202 211 0 96 chr9 41953107 41953159 -75909468 - MER5B DNA MER1_type -100 78 32 6776 220 65 35 chr9 41953273 41953460 -75909167 - L1MD1 LINE L1 -21 6221 6041 2445 61 3 16 chr9 41953460 41953770 -75908857 + AluY SINE Alu 1 306 -5 6776 220 65 35 chr9 41953770 41956124 -75906503 - L1MD1 LINE L1 -201 6041 3522 2321 108 0 6 chr9 41956124 41956438 -75906189 + AluSx SINE Alu 1 312 0 6776 220 65 35 chr9 41956438 41957503 -75905124 - L1MD1 LINE L1 -2720 3522 2490 334 131 0 0 chr9 41957508 41957569 -75905058 - L1MC2 LINE L1 -10 6334 6274 1239 246 47 0 chr9 41957575 41957962 -75904665 - L1MCa LINE L1 -2252 4312 3908 2856 244 58 60 chr9 41957970 41958745 -75903882 - L1MCa LINE L1 -3213 3351 2575 7265 47 13 22 chr9 41958745 41959806 -75902821 - L1PA5 LINE L1 -3 6151 5094 2856 244 58 60 chr9 41959806 41960867 -75901760 - L1MCa LINE L1 -3989 2575 1513 2520 46 0 7 chr9 41960867 41961171 -75901456 + AluY SINE Alu 1 302 -9 2856 244 58 60 chr9 41961171 41961874 -75900753 - L1MCa LINE L1 -5051 1513 810 2475 41 6 22 chr9 41961874 41962190 -75900437 - AluY SINE Alu 0 311 1 2856 244 58 60 chr9 41962190 41962891 -75899736 - L1MCa LINE L1 -5754 810 1 2460 219 116 29 chr9 41962867 41963569 -75899058 - L1MDa LINE L1 -3649 2915 2276 * 2340 70 13 0 chr9 41963569 41963870 -75898757 - AluY SINE Alu -6 305 1 2460 219 116 29 chr9 41963870 41964463 -75898164 - L1MDa LINE L1 -4288 2276 1344 587 233 83 0 chr9 41964451 41964584 -75898043 - L1MDa LINE L1 -6242 301 158 * 340 252 82 22 chr9 41966517 41966652 -75895975 - MER103 DNA DNA -10 156 14 2037 127 3 0 chr9 41966971 41967289 -75895338 + AluSx SINE Alu 1 312 0 1613 79 23 0 chr9 41968091 41968306 -75894321 - AluSg/x SINE Alu -10 302 83 22 35 0 0 chr9 41969228 41969257 -75893370 + AT_rich Low_complexity Low_complexity 1 29 0 342 252 63 0 chr9 41969634 41969761 -75892866 + L1M4 LINE L1 2219 2353 -3793 2412 66 0 10 chr9 41969877 41970180 -75892447 + AluY SINE Alu 1 300 -11 510 204 0 0 chr9 41970180 41970288 -75892339 + (TG)n Simple_repeat Simple_repeat 2 109 0 22 0 0 0 chr9 41970396 41970418 -75892209 + AT_rich Low_complexity Low_complexity 1 22 0 608 274 89 63 chr9 41970668 41971028 -75891599 + L1M4 LINE L1 4175 4561 -1585 944 200 47 33 chr9 41971028 41971243 -75891384 + MER20 DNA MER1_type 1 218 -1 608 274 89 63 chr9 41971243 41971520 -75891107 + L1M4 LINE L1 4561 4829 -1317 2318 91 0 3 chr9 41971598 41971894 -75890733 + AluSg SINE Alu 1 295 -15 36 0 0 0 chr9 41972061 41972097 -75890530 + AT_rich Low_complexity Low_complexity 1 36 0 1322 168 50 0 chr9 41972948 41973210 -75889417 + L1MA4 LINE L1 6015 6289 -11 183 211 0 26 chr9 41973606 41973644 -75888983 - MIR SINE MIR -129 79 43 245 346 19 39 chr9 41973728 41973832 -75888795 + L2 LINE L2 3148 3249 -23 2071 149 0 0 chr9 41973840 41974148 -75888479 - AluJb SINE Alu -4 308 1 1092 219 98 16 chr9 41974497 41974812 -75887815 + MER58B DNA MER1_type 1 341 0 274 264 97 51 chr9 41975311 41975527 -75887100 - HAL1b LINE L1 -690 658 433 230 302 42 31 chr9 41975678 41975774 -75886853 - HAL1b LINE L1 -861 487 391 1359 224 13 31 chr9 41975986 41976303 -75886324 + LTR40b LTR ERVL 152 462 0 413 239 17 17 chr9 41976846 41977022 -75885605 + CT-rich Low_complexity Low_complexity 4 179 0 1397 187 23 4 chr9 41977712 41977969 -75884658 + AluJo SINE Alu 38 299 -13 3218 230 74 46 chr9 41978187 41978808 -75883819 + L1MC4 LINE L1 6459 7061 -981 2268 85 0 0 chr9 41978808 41979115 -75883512 - AluY SINE Alu 0 307 1 3218 230 74 46 chr9 41979115 41979679 -75882948 + L1MC4 LINE L1 7061 7678 -364 453 36 0 0 chr9 41979739 41979794 -75882833 + (TG)n Simple_repeat Simple_repeat 1 55 0 727 268 163 0 chr9 41979820 41980066 -75882561 + L2 LINE L2 2266 2551 -763 1884 155 0 20 chr9 41980658 41980961 -75881666 - AluSx SINE Alu -15 297 1 2084 115 0 13 chr9 41981951 41982263 -75880364 - AluSc SINE Alu 0 309 2 205 253 0 0 chr9 41982295 41982348 -75880279 - MIR SINE MIR -68 140 99 358 337 37 6 chr9 41983246 41983409 -75879218 + MER5A DNA MER1_type 16 183 -6 336 344 37 6 chr9 41984793 41984956 -75877671 + MER5A DNA MER1_type 16 183 -6 332 190 2 136 chr9 41986232 41986359 -75876268 - FLAM SINE Alu 0 133 51 2115 96 65 0 chr9 41986559 41986850 -75875777 + AluSg SINE Alu 1 310 0 21 0 0 0 chr9 41986885 41986906 -75875721 + AT_rich Low_complexity Low_complexity 1 21 0 3129 268 73 7 chr9 41987851 41988699 -75873928 + L1MB8 LINE L1 10 913 -5946 1336 290 60 13 chr9 41988683 41989175 -75873452 + L1MB8 LINE L1 1698 2232 -4727 * 1332 114 13 13 chr9 41989175 41989403 -75873224 + L1MA4 LINE L1 6072 6299 -1 1336 290 60 13 chr9 41989403 41989597 -75873030 + L1MB8 LINE L1 2232 2416 -4543 21 0 0 0 chr9 41989909 41989930 -75872697 + AT_rich Low_complexity Low_complexity 1 21 0 234 226 69 39 chr9 41989982 41990084 -75872543 + L1MB8 LINE L1 2675 2779 -4178 5580 213 49 19 chr9 41990102 41992448 -75870179 + L1MB4 LINE L1 3767 6173 -7 8135 237 51 33 chr9 41992456 41995470 -75867157 + L1MB8 LINE L1 2801 5869 -1088 3626 198 19 69 chr9 41995471 41995576 -75867051 + L1MB8 LINE L1 6003 6112 -877 2429 85 0 0 chr9 41995576 41995882 -75866745 + AluY SINE Alu 2 307 -4 3626 198 19 69 chr9 41995882 41996808 -75865819 + L1MB8 LINE L1 6112 6989 0 2431 76 0 0 chr9 41998028 41998332 -75864295 + AluY SINE Alu 1 304 -7 21 89 0 0 chr9 41999129 41999185 -75863442 + AT_rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr9 41999322 41999359 -75863268 + AT_rich Low_complexity Low_complexity 1 37 0 2488 43 20 7 chr9 42001320 42001619 -75861008 + AluY SINE Alu 1 303 -8 2249 92 3 0 chr9 42002400 42002683 -75859944 - AluSg SINE Alu -26 284 1 1518 211 64 44 chr9 42003074 42003530 -75859097 - LTR40c LTR ERVL 0 465 1 218 343 14 0 chr9 42003630 42003703 -75858924 + MIR3 SINE MIR 126 199 -9 925 164 0 89 chr9 42003787 42003955 -75858672 + MER3 DNA MER1_type 5 150 -59 2347 81 0 29 chr9 42003955 42004265 -75858362 - AluY SINE Alu -10 301 1 925 164 0 89 chr9 42004265 42004321 -75858306 + MER3 DNA MER1_type 150 209 0 2401 76 0 16 chr9 42005097 42005401 -75857226 + AluSc SINE Alu 1 299 -10 1546 234 37 31 chr9 42005489 42005943 -75856684 - MER31A LTR ERV1 -27 458 2 26 50 0 0 chr9 42006793 42006833 -75855794 + AT_rich Low_complexity Low_complexity 1 40 0 243 143 0 0 chr9 42007539 42007581 -75855046 - L1MA7 LINE L1 -64 6227 6186 1994 147 0 6 chr9 42007825 42008137 -75854490 - AluSx SINE Alu -2 310 1 2235 56 4 0 chr9 42008466 42008768 -75853859 - AluY SINE Alu 0 319 17 295 231 51 0 chr9 42008814 42008892 -75853735 - L1MB4 LINE L1 -49 6131 6050 2051 93 43 0 chr9 42009094 42009374 -75853253 - AluY SINE Alu -19 292 1 804 219 62 32 chr9 42010127 42010614 -75852013 - MER34B LTR ERV1 -1 564 1 197 402 56 9 chr9 42010718 42010825 -75851802 - MER5B DNA MER1_type -12 166 55 2517 47 0 0 chr9 42010993 42011289 -75851338 + AluY SINE Alu 1 296 -15 1415 146 115 56 chr9 42011732 42012019 -75850608 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 42014048 42014076 -75848551 + AT_rich Low_complexity Low_complexity 1 28 0 3943 96 24 21 chr9 42015237 42015855 -75846772 - L1MA1 LINE L1 0 6302 5683 242 302 74 33 chr9 42016701 42016882 -75845745 - MIR SINE MIR -49 213 27 186 224 0 0 chr9 42017017 42017066 -75845561 + (TA)n Simple_repeat Simple_repeat 1 49 0 1274 224 78 39 chr9 42017078 42017516 -75845111 + L1ME2 LINE L1 39 493 -5903 457 223 45 110 chr9 42017519 42017608 -75845019 - MER106B DNA MER1_type 0 1059 966 1983 101 0 57 chr9 42017608 42017938 -75844689 - AluY SINE Alu 0 316 4 457 223 45 110 chr9 42017938 42018106 -75844521 - MER106B DNA MER1_type -93 966 1 3091 241 87 68 chr9 42018107 42018363 -75844264 + L1ME2 LINE L1 514 764 -5632 2127 80 14 3 chr9 42018363 42018650 -75843977 + AluY SINE Alu 1 290 -21 3091 241 87 68 chr9 42018650 42020068 -75842559 + L1ME2 LINE L1 764 2220 -4176 3001 212 77 37 chr9 42020051 42021062 -75841565 + L1ME2 LINE L1 5176 6224 -9 * 195 129 0 0 chr9 42021064 42021095 -75841532 + (TATATG)n Simple_repeat Simple_repeat 5 35 0 276 79 0 0 chr9 42022103 42022141 -75840486 - L1M4b LINE L1 -6732 127 90 625 123 41 75 chr9 42022632 42022778 -75839849 - L1P LINE L1 -746 5410 5270 3562 124 33 5 chr9 42022778 42023357 -75839270 + L1PB4 LINE L1 5384 5978 -178 2328 48 0 55 chr9 42023374 42023684 -75838943 + AluY SINE Alu 1 293 -18 2511 53 0 28 chr9 42023801 42024121 -75838506 + AluY SINE Alu 1 311 0 24 0 0 0 chr9 42024645 42024669 -75837958 + AT_rich Low_complexity Low_complexity 1 24 0 1077 78 0 0 chr9 42025231 42025360 -75837267 - AluSg SINE Alu -21 291 163 694 82 0 0 chr9 42025365 42025462 -75837165 - AluSg SINE Alu -213 97 1 285 278 65 37 chr9 42026310 42026418 -75836209 + L3b LINE CR1 1290 1400 -183 23 0 0 0 chr9 42026866 42026889 -75835738 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 42026955 42026980 -75835647 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr9 42027216 42027245 -75835382 + AT_rich Low_complexity Low_complexity 1 29 0 2494 61 0 13 chr9 42027319 42027629 -75834998 - AluY SINE Alu -5 306 1 23 33 0 0 chr9 42027790 42027820 -75834807 + AT_rich Low_complexity Low_complexity 1 30 0 854 259 8 59 chr9 42028218 42028358 -75834269 - MIR SINE MIR -37 225 100 2882 142 23 16 chr9 42028358 42028844 -75833783 - LTR45B LTR ERV1 0 489 1 854 259 8 59 chr9 42028844 42028939 -75833688 - MIR SINE MIR -162 100 2 2447 63 0 0 chr9 42029031 42029316 -75833311 + AluY SINE Alu 3 287 -24 1023 223 33 101 chr9 42030890 42030928 -75831699 - MLT1A2 LTR MaLR -6 368 329 2377 79 0 16 chr9 42030928 42031244 -75831383 + AluY SINE Alu 1 311 0 1023 223 33 101 chr9 42031244 42031600 -75831027 - MLT1A2 LTR MaLR -45 329 1 338 58 39 0 chr9 42033442 42033494 -75829133 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 16798 210 31 13 chr9 42033827 42036988 -75825639 - L1PA15 LINE L1 -1 6815 3524 1978 63 93 4 chr9 42036988 42037258 -75825369 + AluY SINE Alu 1 294 -17 16798 210 31 13 chr9 42037258 42039506 -75823121 - L1PA15 LINE L1 -3292 3524 1319 251 211 28 42 chr9 42039863 42039934 -75822693 + LTR40c LTR ERVL 5 74 -391 3482 189 38 4 chr9 42039937 42040648 -75821979 + L1MB3 LINE L1 5447 6181 -2 1532 253 34 10 chr9 42040711 42041099 -75821528 + LTR40c LTR ERVL 63 459 -6 210 176 0 0 chr9 42043081 42043132 -75819495 + (TG)n Simple_repeat Simple_repeat 2 52 0 3736 148 105 29 chr9 42043137 42044526 -75818101 + pTR5 LTR ERV1 742 2606 0 348 143 0 0 chr9 42044532 42044602 -75818025 + (TG)n Simple_repeat Simple_repeat 2 71 0 2454 57 0 3 chr9 42044991 42045290 -75817337 - AluY SINE Alu -13 298 1 1875 134 71 34 chr9 42047141 42047492 -75815135 - THE1B LTR MaLR 0 364 1 988 304 116 20 chr9 42048121 42048643 -75813984 + L2 LINE L2 2432 3005 -308 943 230 0 0 chr9 42048647 42048821 -75813806 + MSTB LTR MaLR 5 178 -248 27 29 0 0 chr9 42049165 42049199 -75813428 + AT_rich Low_complexity Low_complexity 1 34 0 2224 105 0 7 chr9 42049299 42049605 -75813022 + AluSq SINE Alu 2 305 -8 502 219 48 119 chr9 42050153 42050363 -75812264 - MER58A DNA MER1_type -29 195 1 328 333 0 0 chr9 42051772 42051874 -75810753 - MER94 DNA DNA -32 102 1 1868 156 117 17 chr9 42052767 42053087 -75809540 + MLT2D LTR ERVL 17 378 -36 516 45 0 0 chr9 42053087 42053154 -75809473 + (CA)n Simple_repeat Simple_repeat 2 68 0 1868 156 117 17 chr9 42053154 42053193 -75809434 + MLT2D LTR ERVL 378 412 -2 21 36 0 0 chr9 42053393 42053421 -75809206 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr9 42053505 42053528 -75809099 + AT_rich Low_complexity Low_complexity 1 23 0 1249 191 141 0 chr9 42054747 42055003 -75807624 + AluJb SINE Alu 1 292 -10 653 258 113 19 chr9 42055452 42055665 -75806962 + MIR SINE MIR 30 262 0 214 244 0 0 chr9 42056151 42056196 -75806431 - L2 LINE L2 -2 3270 3226 1725 171 3 13 chr9 42056471 42056770 -75805857 - AluJo SINE Alu -16 296 1 291 307 118 8 chr9 42057044 42057171 -75805456 + MER5A DNA MER1_type 43 183 -6 1858 144 21 7 chr9 42057249 42057540 -75805087 + AluSx SINE Alu 6 300 -12 2688 215 74 22 chr9 42057572 42058302 -75804325 - L1ME1 LINE L1 -3 6163 5396 250 162 88 29 chr9 42058335 42058403 -75804224 - L1ME1 LINE L1 -1556 4590 4519 204 259 0 37 chr9 42058552 42058606 -75804021 + CT-rich Low_complexity Low_complexity 5 56 0 1751 158 42 3 chr9 42058752 42059037 -75803590 - AluJb SINE Alu -16 296 1 23 54 0 0 chr9 42059037 42059074 -75803553 + AT_rich Low_complexity Low_complexity 1 37 0 678 299 44 53 chr9 42059960 42060683 -75801944 + L1MEc LINE L1 1022 1738 -4658 23 54 0 0 chr9 42060754 42060791 -75801836 + AT_rich Low_complexity Low_complexity 1 37 0 759 272 85 21 chr9 42060976 42061417 -75801210 + L1MEc LINE L1 2134 2558 -3657 362 169 28 0 chr9 42061915 42061986 -75800641 + MER116 DNA Mariner 5 77 -3 675 348 112 16 chr9 42063239 42064045 -75798582 - L2 LINE L2 0 3313 2427 219 368 28 9 chr9 42064202 42064308 -75798319 - L2 LINE L2 -606 2708 2601 1499 164 74 0 chr9 42064910 42065179 -75797448 + 7SLRNA srpRNA srpRNA 24 312 -8 183 100 0 0 chr9 42065180 42065210 -75797417 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 181 367 0 0 chr9 42066637 42066686 -75795941 - L2 LINE L2 -20 3293 3245 311 280 28 9 chr9 42067476 42067583 -75795044 - MIR3 SINE MIR 0 208 100 2401 75 3 3 chr9 42068065 42068370 -75794257 + AluY SINE Alu 1 305 -6 2034 160 0 3 chr9 42068583 42068890 -75793737 - AluSx SINE Alu -6 306 1 24 32 0 0 chr9 42069730 42069761 -75792866 + AT_rich Low_complexity Low_complexity 1 31 0 192 318 220 8 chr9 42070298 42070430 -75792197 + MIR SINE MIR 53 212 -50 198 297 14 54 chr9 42071078 42071152 -75791475 - MIR SINE MIR -17 245 175 251 260 48 68 chr9 42071307 42071453 -75791174 + MIR SINE MIR 42 184 -78 289 336 49 7 chr9 42072292 42072435 -75790192 + MIR SINE MIR 22 170 -92 272 322 89 0 chr9 42072911 42073001 -75789626 + MIR SINE MIR 30 127 -81 2163 114 0 32 chr9 42073031 42073339 -75789288 + AluSx SINE Alu 1 298 -14 29 0 0 0 chr9 42073589 42073618 -75789009 + AT_rich Low_complexity Low_complexity 1 29 0 3786 154 39 22 chr9 42075373 42076088 -75786539 + LTR8A LTR ERV1 1 727 0 323 271 21 42 chr9 42076098 42076242 -75786385 - HERVS71 LTR ERV1 -3911 5067 4927 1990 140 72 4 chr9 42076335 42076942 -75785685 + MER50 LTR ERV1 12 711 -23 206 255 0 0 chr9 42078195 42078246 -75784381 + A-rich Low_complexity Low_complexity 1 51 0 1973 91 34 20 chr9 42079837 42080133 -75782494 + AluY SINE Alu 1 300 -11 441 268 54 0 chr9 42081626 42081738 -75780889 - MER8 DNA MER2_type -121 118 1 22 0 0 0 chr9 42082434 42082456 -75780171 + AT_rich Low_complexity Low_complexity 1 22 0 1581 132 0 0 chr9 42083051 42083270 -75779357 - AluSg/x SINE Alu -12 298 80 2116 69 45 21 chr9 42083545 42083835 -75778792 + AluY SINE Alu 1 297 -14 2412 61 7 0 chr9 42084359 42084654 -75777973 + AluY SINE Alu 1 297 -14 2722 91 6 3 chr9 42085928 42086291 -75776336 - THE1B LTR MaLR 0 364 1 2472 67 0 0 chr9 42086470 42086770 -75775857 - AluY SINE Alu -11 300 1 233 209 0 0 chr9 42087247 42087290 -75775337 + GA-rich Low_complexity Low_complexity 3 45 0 621 225 59 5 chr9 42088103 42088290 -75774337 - L1 LINE L1 -1412 4734 4538 185 196 103 112 chr9 42089362 42089469 -75773158 + L3 LINE CR1 1469 1574 -3 586 259 134 0 chr9 42089519 42089720 -75772907 - MIR SINE MIR -13 249 22 646 262 24 0 chr9 42089735 42089899 -75772728 + MER5A DNA MER1_type 17 184 -5 2421 69 0 19 chr9 42090472 42090789 -75771838 - AluY SINE Alu 0 311 1 2298 48 0 55 chr9 42090906 42091218 -75771409 - AluY SINE Alu -16 295 1 3474 119 33 3 chr9 42091235 42091813 -75770814 - L1PB4 LINE L1 -178 5978 5384 578 124 48 76 chr9 42091813 42091958 -75770669 + L1P LINE L1 5270 5410 -746 264 79 0 0 chr9 42092445 42092483 -75770144 + L1M4b LINE L1 90 127 -6732 2664 217 62 31 chr9 42093539 42094527 -75768100 - L1ME2 LINE L1 -9 6224 5196 1866 249 66 72 chr9 42094534 42095751 -75766876 - L1ME2 LINE L1 -4176 2220 1012 1051 245 68 43 chr9 42095766 42095950 -75766677 - L1ME2 LINE L1 -5431 965 787 2109 84 14 3 chr9 42095950 42096237 -75766390 - AluY SINE Alu -21 290 1 1051 245 68 43 chr9 42096237 42096493 -75766134 - L1ME2 LINE L1 -5609 787 514 411 239 51 96 chr9 42096494 42096659 -75765968 + MER106B DNA MER1_type 1 172 -887 2044 103 0 34 chr9 42096659 42096986 -75765641 + AluY SINE Alu 1 317 0 411 239 51 96 chr9 42096986 42097065 -75765562 + MER106B DNA MER1_type 172 1054 -5 1146 219 78 39 chr9 42097073 42097511 -75765116 - L1ME2 LINE L1 -5903 493 39 198 191 0 0 chr9 42097534 42097576 -75765051 + (TA)n Simple_repeat Simple_repeat 1 42 0 267 287 74 33 chr9 42097711 42097892 -75764735 + MIR SINE MIR 27 213 -49 3916 96 24 21 chr9 42098742 42099360 -75763267 + L1MA1 LINE L1 5683 6302 0 28 0 0 0 chr9 42100524 42100552 -75762075 + AT_rich Low_complexity Low_complexity 1 28 0 1455 144 116 49 chr9 42102569 42102854 -75759773 - AluJo SINE Alu -8 304 1 2414 61 0 0 chr9 42103297 42103593 -75759034 - AluY SINE Alu -15 296 1 198 402 56 9 chr9 42103761 42103868 -75758759 + MER5B DNA MER1_type 55 166 -12 640 235 135 23 chr9 42103980 42104449 -75758178 + MER34B LTR ERV1 1 564 -1 2289 92 3 10 chr9 42105202 42105506 -75757121 + AluY SINE Alu 1 302 -9 2075 115 28 3 chr9 42105506 42105827 -75756800 + L1PA16 LINE L1 5828 6156 -10 213 380 92 6 chr9 42107768 42107931 -75754696 + MIR3 SINE MIR 30 206 -2 1876 58 12 0 chr9 42108569 42108810 -75753817 - L1PA5 LINE L1 -2 6152 5909 346 224 12 0 chr9 42109341 42109426 -75753201 - MER96 DNA MER1_type? -89 86 1 2212 114 3 13 chr9 42110270 42110585 -75752042 + AluSx SINE Alu 1 312 0 4165 186 11 37 chr9 42111594 42112117 -75750510 - L1MA10 LINE L1 -39 6295 5760 3999 87 5 69 chr9 42112117 42112758 -75749869 - MER4A LTR ERV1 0 600 1 4165 186 11 37 chr9 42112758 42112948 -75749679 - L1MA10 LINE L1 -574 5760 5567 2560 36 0 13 chr9 42112948 42113250 -75749377 - AluY SINE Alu -13 298 1 4165 186 11 37 chr9 42113250 42113491 -75749136 - L1MA10 LINE L1 -767 5567 5364 295 29 0 0 chr9 42113508 42113543 -75749084 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1212 67 0 0 chr9 42113543 42113692 -75748935 - AluY SINE Alu -28 283 135 588 165 31 17 chr9 42113692 42113838 -75748789 - L1M4 LINE L1 -766 5380 5227 * 1122 185 83 29 chr9 42113832 42114108 -75748519 + L1M4 LINE L1 4939 5229 -917 2358 91 0 0 chr9 42114245 42114541 -75748086 + AluSx SINE Alu 6 301 -11 2228 99 0 0 chr9 42114558 42114840 -75747787 + AluSc SINE Alu 5 286 -23 5844 63 1 12 chr9 42114865 42115583 -75747044 - L1PA8 LINE L1 -2 6170 5461 2115 129 0 23 chr9 42115635 42115945 -75746682 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr9 42116081 42116104 -75746523 + AT_rich Low_complexity Low_complexity 1 23 0 2214 105 0 7 chr9 42116104 42116398 -75746229 - AluY SINE Alu -19 292 1 606 152 0 0 chr9 42117870 42117962 -75744665 - MER20 DNA MER1_type -127 92 1 195 263 12 100 chr9 42118616 42118696 -75743931 + L2 LINE L2 3241 3313 0 2243 171 28 21 chr9 42118777 42119250 -75743377 - MER31A LTR ERV1 -9 476 1 923 327 118 5 chr9 42120325 42120934 -75741693 + L2 LINE L2 2109 2786 -528 2442 130 42 12 chr9 42121138 42121545 -75741082 + MSTB1 LTR MaLR 14 432 0 2255 107 0 13 chr9 42122295 42122603 -75740024 + AluSc SINE Alu 1 304 -5 2280 110 43 48 chr9 42123067 42123459 -75739168 + L1MA4A LINE L1 5913 6302 -1 375 23 0 0 chr9 42124437 42124481 -75738146 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 1821 146 4 0 chr9 42124484 42124758 -75737869 - AluSg SINE Alu -35 275 1 845 314 41 35 chr9 42124984 42125494 -75737133 - L1ME3A LINE L1 -204 5966 5454 207 139 0 0 chr9 42125774 42125810 -75736817 + (CA)n Simple_repeat Simple_repeat 2 37 0 2342 77 0 0 chr9 42125834 42126119 -75736508 + AluY SINE Alu 22 306 -5 379 269 84 18 chr9 42126240 42126407 -75736220 + MIR SINE MIR 61 238 -24 2954 233 40 76 chr9 42126575 42126687 -75735940 - MER31A-int LTR ERV1 -110 4081 3967 2596 118 75 5 chr9 42126687 42127103 -75735524 + LTR56 LTR ERV1 1 445 0 2954 233 40 76 chr9 42127103 42127155 -75735472 - MER31A-int LTR ERV1 -224 3967 3915 2079 134 0 6 chr9 42127155 42127469 -75735158 - AluSx SINE Alu 0 312 1 2206 203 40 73 chr9 42127478 42128055 -75734572 - MER74A LTR ERVL 0 558 1 2954 233 40 76 chr9 42128055 42128153 -75734474 - MER31A-int LTR ERV1 -284 3907 3807 2256 97 3 3 chr9 42128153 42128461 -75734166 - AluY SINE Alu -3 308 1 2954 233 40 76 chr9 42128461 42129130 -75733497 - MER31A-int LTR ERV1 -384 3807 3172 2466 81 0 0 chr9 42129568 42129876 -75732751 + AluY SINE Alu 1 308 -3 3461 21 0 0 chr9 42129904 42130280 -75732347 - L1PA2 LINE L1 0 6155 5780 328 50 0 0 chr9 42130281 42130321 -75732306 + L1P LINE L1 1737 1776 -4370 455 281 48 0 chr9 42130324 42130470 -75732157 - L2 LINE L2 0 3313 3161 1907 204 104 7 chr9 42130486 42130904 -75731723 + MLT2B2 LTR ERVL 11 477 -38 309 51 0 0 chr9 42130904 42130943 -75731684 + (CA)n Simple_repeat Simple_repeat 2 40 0 1907 204 104 7 chr9 42130943 42130974 -75731653 + MLT2B2 LTR ERVL 477 504 -11 357 322 8 17 chr9 42131009 42131127 -75731500 - L2 LINE L2 -291 3022 2906 297 0 0 0 chr9 42131182 42131215 -75731412 + (CA)n Simple_repeat Simple_repeat 1 33 0 1819 201 74 39 chr9 42132007 42132495 -75730132 - MLT1D LTR MaLR 0 505 1 1575 193 6 39 chr9 42133420 42133461 -75729166 - L1PB4 LINE L1 0 6156 6115 2950 6 0 0 chr9 42133461 42133777 -75728850 - AluYb8 SINE Alu -2 316 1 1575 193 6 39 chr9 42133777 42134072 -75728555 - L1PB4 LINE L1 -41 6115 5831 1494 128 5 0 chr9 42134082 42134300 -75728327 - AluSg/x SINE Alu -5 307 89 22 35 0 0 chr9 42135903 42135932 -75726695 + AT_rich Low_complexity Low_complexity 1 29 0 2510 53 3 13 chr9 42137124 42137428 -75725199 - AluY SINE Alu -10 301 1 4142 123 16 6 chr9 42137428 42138054 -75724573 - L1PA13 LINE L1 -7 6156 5525 5734 159 8 8 chr9 42138054 42139028 -75723599 - L1PA13 LINE L1 -1784 4362 3389 248 65 0 0 chr9 42139130 42139161 -75723466 + (A)n Simple_repeat Simple_repeat 1 31 0 11739 201 33 13 chr9 42139178 42139284 -75723343 + L1PA13 LINE L1 1173 1275 -5522 183 80 0 0 chr9 42139284 42139309 -75723318 + (CTG)n Simple_repeat Simple_repeat 1 25 0 11739 201 33 13 chr9 42139309 42142579 -75720048 + L1PA13 LINE L1 1275 4617 -2180 5861 114 34 20 chr9 42142580 42143734 -75718893 + L1PA13 LINE L1 5647 6814 0 448 241 29 51 chr9 42144180 42144317 -75718310 - MER5B DNA MER1_type -1 177 44 1589 226 117 40 chr9 42144481 42144784 -75717843 + LTR40b LTR ERVL 1 279 -183 2262 98 0 0 chr9 42144784 42145071 -75717556 + AluY SINE Alu 1 287 -24 201 26 79 0 chr9 42145078 42145116 -75717511 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1589 226 117 40 chr9 42145116 42145233 -75717394 + LTR40b LTR ERVL 284 462 0 1714 178 7 23 chr9 42145567 42145876 -75716751 + AluJb SINE Alu 3 306 -6 878 172 0 0 chr9 42146203 42146325 -75716302 + FLAM_C SINE Alu 3 124 -9 1885 69 0 4 chr9 42146505 42146737 -75715890 + L1PA8 LINE L1 5940 6170 -2 40 21 0 0 chr9 42148521 42148568 -75714059 + AT_rich Low_complexity Low_complexity 1 47 0 2105 98 14 0 chr9 42148898 42149199 -75713428 + AluSx SINE Alu 1 305 0 392 290 83 7 chr9 42149553 42149698 -75712929 - MIR3 SINE MIR -24 184 29 784 276 13 0 chr9 42150097 42150329 -75712298 + L1MC1 LINE L1 4863 5097 -1049 * 1112 156 0 0 chr9 42150324 42150504 -75712123 + L1MC/D LINE L1 5615 5794 -539 6405 164 15 9 chr9 42150507 42150555 -75712072 + L1MC1 LINE L1 5117 5163 -1170 2086 132 3 0 chr9 42150555 42150851 -75711776 + AluSx SINE Alu 1 297 -15 6405 164 15 9 chr9 42150851 42151272 -75711355 + L1MC1 LINE L1 5163 5580 -753 2531 46 0 7 chr9 42151272 42151575 -75711052 + AluY SINE Alu 1 301 -10 6405 164 15 9 chr9 42151575 42152302 -75710325 + L1MC1 LINE L1 5580 6327 -6 2835 19 3 0 chr9 42152325 42152642 -75709985 + AluYb8 SINE Alu 1 318 0 2230 78 0 3 chr9 42152948 42153258 -75709369 + AluY SINE Alu 1 309 0 186 43 0 0 chr9 42153442 42153465 -75709162 + (A)n Simple_repeat Simple_repeat 1 23 0 840 83 8 8 chr9 42153510 42153631 -75708996 - Alu SINE Alu -16 295 175 1459 268 78 44 chr9 42153636 42154300 -75708327 + L1MCa LINE L1 775 1461 -4965 234 300 40 40 chr9 42154374 42154524 -75708103 - MLT1K LTR MaLR -13 575 426 1703 238 110 42 chr9 42154554 42154630 -75707997 + LTR48B LTR ERV1 1 70 -574 2561 66 0 0 chr9 42154630 42154934 -75707693 - AluY SINE Alu -7 304 1 1703 238 110 42 chr9 42154934 42155458 -75707169 + LTR48B LTR ERV1 70 642 -2 2299 90 0 22 chr9 42155815 42156126 -75706501 + AluY SINE Alu 1 304 -7 205 223 154 69 chr9 42156487 42156617 -75706010 + MIR3 SINE MIR 11 151 -57 403 313 62 91 chr9 42157147 42157356 -75705271 - L2 LINE L2 -588 2726 2533 2509 72 0 0 chr9 42157356 42157660 -75704967 - AluSg SINE Alu -6 304 1 403 313 62 91 chr9 42157660 42157866 -75704761 - L2 LINE L2 -781 2533 2323 446 261 183 7 chr9 42157972 42158125 -75704502 + MER5A DNA MER1_type 10 189 0 2153 104 4 0 chr9 42159729 42160054 -75702573 + AluY SINE Alu 1 326 0 2090 96 27 14 chr9 42160953 42161245 -75701382 - AluY SINE Alu -13 298 3 1620 83 0 0 chr9 42161257 42161461 -75701166 - AluY SINE Alu -107 204 1 244 206 162 0 chr9 42161985 42162053 -75700574 + L1MEd LINE L1 318 396 -5723 257 361 172 0 chr9 42162616 42162738 -75699889 - L2 LINE L2 -3 3269 3127 684 268 50 42 chr9 42163215 42163668 -75698959 + MLT1D LTR MaLR 7 505 0 213 39 0 0 chr9 42164046 42164072 -75698555 + (A)n Simple_repeat Simple_repeat 1 26 0 1706 208 0 7 chr9 42166979 42167287 -75695340 - AluJo SINE Alu -6 306 1 351 204 39 29 chr9 42167289 42167392 -75695235 - MER58 DNA MER1_type -88 127 24 668 213 20 87 chr9 42167566 42167761 -75694866 + MIR SINE MIR 31 214 -48 297 205 36 12 chr9 42167768 42167851 -75694776 + L1MB3 LINE L1 5688 5772 -411 1842 153 55 0 chr9 42167863 42168209 -75694418 + L1MB3 LINE L1 5818 6182 -1 2046 106 33 10 chr9 42168283 42168585 -75694042 - AluSg SINE Alu 0 310 2 698 120 0 0 chr9 42169514 42169622 -75693005 + L1MA2 LINE L1 6197 6304 0 5328 137 13 24 chr9 42169979 42171434 -75691193 + L1PA16 LINE L1 4708 6161 -5 234 114 0 0 chr9 42171455 42171490 -75691137 + MSTD LTR MaLR 1 35 -361 * 651 179 61 14 chr9 42171488 42171663 -75690964 + MSTD LTR MaLR 155 377 -51 689 228 85 0 chr9 42171665 42171937 -75690690 + L1M3c LINE L1 1202 1496 -4645 11594 36 6 1 chr9 42172048 42174275 -75688352 + L1PA4 LINE L1 3942 6152 -3 286 327 108 16 chr9 42174385 42174636 -75687991 + LTR16C LTR ERVL 169 442 -49 1295 175 59 20 chr9 42175103 42175406 -75687221 - LTR40b LTR ERVL 0 462 148 2350 80 3 0 chr9 42176204 42176503 -75686124 + AluY SINE Alu 1 300 -11 2743 91 3 3 chr9 42177772 42178136 -75684491 - THE1B LTR MaLR 0 364 1 2328 64 0 7 chr9 42178313 42178625 -75684002 - AluY SINE Alu 0 310 1 272 322 89 0 chr9 42178655 42178745 -75683882 - MIR SINE MIR -81 127 30 606 253 146 0 chr9 42179251 42179484 -75683143 - L1MC4 LINE L1 -180 7862 7596 592 106 0 0 chr9 42179855 42179940 -75682687 - AluSg/x SINE Alu -12 297 213 1118 111 6 12 chr9 42179940 42180102 -75682525 - AluSq SINE Alu -152 161 1 2329 76 0 23 chr9 42180751 42181052 -75681575 - AluSq SINE Alu -19 294 1 639 226 7 15 chr9 42183208 42183345 -75679282 + FRAM SINE Alu 1 136 -40 221 197 14 0 chr9 42183404 42183475 -75679152 + GA-rich Low_complexity Low_complexity 3 74 0 2429 230 47 66 chr9 42183491 42184757 -75677870 + L1M1 LINE L1 2598 3825 -3740 2400 93 0 13 chr9 42184757 42185070 -75677557 + AluSg SINE Alu 1 309 -1 2429 230 47 66 chr9 42185070 42185477 -75677150 + L1M1 LINE L1 3825 4238 -3327 21 0 0 0 chr9 42185602 42185623 -75677004 + AT_rich Low_complexity Low_complexity 1 21 0 2331 110 0 3 chr9 42185921 42186231 -75676396 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 42187678 42187718 -75674909 + AT_rich Low_complexity Low_complexity 1 40 0 17792 65 4 5 chr9 42188149 42190668 -75671959 + L1P LINE L1 951 3466 -2680 302 0 0 26 chr9 42190771 42190810 -75671817 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 42191071 42191099 -75671528 + AT_rich Low_complexity Low_complexity 1 28 0 1269 191 141 0 chr9 42192426 42192682 -75669945 + AluJb SINE Alu 1 292 -10 492 18 0 0 chr9 42194887 42194944 -75667683 + (TG)n Simple_repeat Simple_repeat 1 57 0 1773 276 56 7 chr9 42195500 42196380 -75666247 + L1MEc LINE L1 2172 3051 -3164 756 155 20 0 chr9 42199313 42199461 -75663166 - L1MB3 LINE L1 -4 6179 6029 312 269 9 9 chr9 42199736 42199844 -75662783 + (TA)n Simple_repeat Simple_repeat 1 108 0 1821 62 0 9 chr9 42200599 42200824 -75661803 + AluY SINE Alu 87 309 -2 490 88 11 11 chr9 42201384 42201475 -75661152 + (GA)n Simple_repeat Simple_repeat 2 92 0 184 267 100 0 chr9 42202369 42202429 -75660198 + MIR SINE MIR 178 243 -19 1414 207 99 14 chr9 42203325 42203678 -75658949 - MLT1B LTR MaLR -4 386 4 268 119 45 0 chr9 42204777 42204844 -75657783 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 281 346 33 25 chr9 42205103 42205399 -75657228 + L2 LINE L2 2791 3090 -223 213 214 0 0 chr9 42205499 42205541 -75657086 + L2 LINE L2 3241 3282 -31 196 239 104 0 chr9 42205853 42205920 -75656707 - MIR SINE MIR -83 179 106 204 338 14 14 chr9 42205977 42206051 -75656576 - MIR SINE MIR -105 103 30 454 204 259 27 chr9 42206075 42206260 -75656367 + MIR SINE MIR 40 262 0 1348 199 10 70 chr9 42206279 42206517 -75656110 - AluJo SINE Alu -15 297 79 1723 104 0 0 chr9 42206517 42206747 -75655880 + AluSg/x SINE Alu 72 301 -9 1348 199 10 70 chr9 42206747 42206809 -75655818 - AluJo SINE Alu -233 79 15 35755 62 10 6 chr9 42207083 42207856 -75654771 + L1PA5 LINE L1 405 1174 -4980 318 23 0 0 chr9 42207856 42207900 -75654727 + L1PA2 LINE L1 6110 6153 -2 35755 62 10 6 chr9 42207900 42212850 -75649777 + L1PA5 LINE L1 1174 6148 -6 1494 192 45 24 chr9 42213038 42213371 -75649256 - MER2 DNA MER2_type -4 340 1 2285 104 13 0 chr9 42213765 42214073 -75648554 - AluSq SINE Alu -1 312 1 2955 182 10 11 chr9 42214435 42214956 -75647671 + MER44D DNA MER2_type 1 575 -30 471 134 268 0 chr9 42215881 42215993 -75646634 - L1MB1 LINE L1 -19 6170 6029 1538 181 16 23 chr9 42216000 42216304 -75646323 + L1M3 LINE L1 5484 5785 -383 26 0 0 0 chr9 42218054 42218080 -75644547 + AT_rich Low_complexity Low_complexity 1 26 0 194 88 0 29 chr9 42218175 42218209 -75644418 + (TCCC)n Simple_repeat Simple_repeat 4 36 0 27 29 0 0 chr9 42218284 42218318 -75644309 + AT_rich Low_complexity Low_complexity 1 34 0 284 167 0 0 chr9 42218623 42218671 -75643956 + Alu SINE Alu 1 48 -253 353 204 157 9 chr9 42218820 42218928 -75643699 - L1MB1 LINE L1 0 6168 6045 1277 204 23 30 chr9 42218942 42219246 -75643381 + L1M3 LINE L1 5484 5785 -383 29 0 0 0 chr9 42221002 42221031 -75641596 + AT_rich Low_complexity Low_complexity 1 29 0 276 30 0 0 chr9 42221250 42221283 -75641344 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 295 129 0 57 chr9 42221995 42222065 -75640562 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 346 284 29 10 chr9 42223175 42223277 -75639350 - MER5B DNA MER1_type 0 178 75 1758 173 13 7 chr9 42223411 42223712 -75638915 - AluJb SINE Alu -6 306 4 660 288 29 0 chr9 42224231 42224401 -75638226 - MIR SINE MIR -74 188 14 256 159 16 16 chr9 42224684 42224747 -75637880 + GA-rich Low_complexity Low_complexity 2 64 0 3968 119 34 0 chr9 42226218 42226832 -75635795 - MER41B LTR ERV1 0 635 1 302 224 26 0 chr9 42227944 42228020 -75634607 - MER116 DNA Mariner 0 80 3 327 49 0 0 chr9 42228868 42228909 -75633718 + (TA)n Simple_repeat Simple_repeat 2 42 0 273 288 153 13 chr9 42228942 42229178 -75633449 - L1MB1 LINE L1 -1919 5889 5621 708 296 57 6 chr9 42229402 42229633 -75632994 + MIR SINE MIR 5 244 -18 316 233 22 11 chr9 42229826 42229916 -75632711 - L1MB1 LINE L1 -2312 5473 5383 2314 69 0 0 chr9 42229921 42230227 -75632400 - AluY SINE Alu 0 311 6 299 281 65 43 chr9 42230516 42230655 -75631972 - L1P LINE L1 -1101 5045 4904 2142 117 0 13 chr9 42230787 42231087 -75631540 - AluSx SINE Alu -16 296 1 800 132 72 6 chr9 42231173 42231340 -75631287 - L1MA8 LINE L1 -2 6289 6112 420 259 80 0 chr9 42231443 42231555 -75631072 + MIR SINE MIR 124 244 -18 310 212 5 25 chr9 42231749 42231840 -75630787 - L1MC/D LINE L1 -674 5447 5380 2244 87 0 0 chr9 42231843 42232158 -75630469 - AluY SINE Alu 0 320 6 287 303 0 28 chr9 42232472 42232581 -75630046 - L1P LINE L1 -1137 5009 4904 2060 127 0 13 chr9 42232713 42233012 -75629615 - AluSx SINE Alu -17 295 1 14120 182 33 36 chr9 42233098 42235113 -75627514 - L1MA8 LINE L1 -2 7708 5689 1617 176 32 7 chr9 42235113 42235397 -75627230 - AluJb SINE Alu -21 291 1 14120 182 33 36 chr9 42235397 42236811 -75625816 - L1MA8 LINE L1 -2021 5689 4272 2120 116 20 0 chr9 42236811 42237112 -75625515 - AluSc SINE Alu -2 307 1 14120 182 33 36 chr9 42237112 42237547 -75625080 - L1MA8 LINE L1 -3438 4272 3837 2293 90 0 13 chr9 42237547 42237846 -75624781 - AluSg SINE Alu -15 295 1 14120 182 33 36 chr9 42237846 42239112 -75623515 - L1MA8 LINE L1 -3873 3837 2598 287 169 14 0 chr9 42239128 42239199 -75623428 + CT-rich Low_complexity Low_complexity 3 74 0 676 257 0 0 chr9 42239250 42239386 -75623241 - FRAM SINE Alu -40 136 1 782 229 83 9 chr9 42239387 42239723 -75622904 - L1M3c LINE L1 -4572 2465 2105 754 170 115 6 chr9 42239739 42239904 -75622723 - MSTD LTR MaLR -59 337 155 245 114 0 0 chr9 42239902 42239937 -75622690 - MSTD LTR MaLR -361 35 1 * 5534 143 19 6 chr9 42239958 42241429 -75621198 - L1PA16 LINE L1 -5 6161 4675 346 237 108 0 chr9 42241457 42241550 -75621077 - L1M3c LINE L1 -6922 108 6 229 263 0 0 chr9 42241626 42241683 -75620944 - L1M4 LINE L1 -1569 4577 4521 2203 90 35 7 chr9 42241924 42242214 -75620413 - AluSq SINE Alu -9 304 7 24 0 0 0 chr9 42242748 42242772 -75619855 + AT_rich Low_complexity Low_complexity 1 24 0 277 308 192 0 chr9 42242953 42243109 -75619518 - MIR SINE MIR -1 261 76 186 343 60 0 chr9 42244457 42244524 -75618103 - MIR SINE MIR -121 141 71 837 120 20 7 chr9 42244813 42244963 -75617664 - L1MB3 LINE L1 -3 6180 6029 235 180 20 0 chr9 42245241 42245291 -75617336 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 74 0 0 chr9 42245315 42245342 -75617285 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr9 42245342 42245369 -75617258 + AT_rich Low_complexity Low_complexity 1 27 0 204 324 127 0 chr9 42246785 42246931 -75615696 - L2 LINE L2 -264 3049 2885 519 291 53 93 chr9 42247117 42247492 -75615135 - L2 LINE L2 -658 2656 2297 708 268 113 26 chr9 42248297 42248607 -75614020 - MER46C DNA MER2_type 0 338 2 2157 100 25 0 chr9 42249353 42249674 -75612953 + L1MA2 LINE L1 5976 6304 0 197 274 48 0 chr9 42250332 42250394 -75612233 - L2 LINE L2 -2 3270 3206 1359 210 107 62 chr9 42250400 42250838 -75611789 - MLT1C LTR MaLR -4 463 6 871 102 0 8 chr9 42251336 42251507 -75611120 - AluSp/q SINE Alu 0 336 167 2089 130 0 34 chr9 42251647 42251970 -75610657 + AluSx SINE Alu 1 312 0 23 54 0 0 chr9 42252189 42252226 -75610401 + AT_rich Low_complexity Low_complexity 1 37 0 465 218 73 0 chr9 42253060 42253170 -75609457 + L1MA8 LINE L1 5914 6031 -260 203 136 23 23 chr9 42253965 42254009 -75608618 + (TA)n Simple_repeat Simple_repeat 1 44 0 204 336 33 33 chr9 42254595 42254717 -75607910 + L3 LINE CR1 597 718 -859 2059 119 0 0 chr9 42255021 42255336 -75607291 - AluSc SINE Alu 0 315 1 206 136 23 0 chr9 42257475 42257519 -75605108 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2270 275 39 7 chr9 42258298 42259188 -75603439 + L1MEc LINE L1 2172 3051 -3164 584 214 40 0 chr9 42260667 42260793 -75601834 - L1MD2 LINE L1 -19 6340 6210 266 265 179 26 chr9 42260831 42260948 -75601679 - L1ME1 LINE L1 -90 6076 5942 * 503 206 96 14 chr9 42260946 42261092 -75601535 - L1MDa LINE L1 -6363 177 20 1015 179 17 125 chr9 42261396 42261510 -75601117 - L1ME1 LINE L1 -334 5832 5707 2105 141 36 28 chr9 42261510 42261871 -75600756 - THE1B LTR MaLR 0 364 1 1015 179 17 125 chr9 42261871 42261950 -75600677 - L1ME1 LINE L1 -459 5707 5621 1880 139 10 23 chr9 42261950 42262252 -75600375 - AluSx SINE Alu -14 298 1 1015 179 17 125 chr9 42262252 42262408 -75600219 - L1ME1 LINE L1 -545 5621 5520 1057 213 41 25 chr9 42262438 42262753 -75599874 - L1ME1 LINE L1 -1610 4536 4217 1248 284 11 11 chr9 42262776 42263135 -75599492 + LTR40c LTR ERVL 5 363 -102 297 228 87 11 chr9 42263138 42263230 -75599397 - L1ME LINE L1 -676 5490 5392 * 1093 252 143 49 chr9 42263228 42263839 -75598788 + L1ME2 LINE L1 5488 6163 -1 1191 150 0 6 chr9 42264439 42264619 -75598008 + AluSq SINE Alu 1 179 -134 251 286 43 0 chr9 42264640 42264710 -75597917 + GA-rich Low_complexity Low_complexity 6 78 0 180 0 0 0 chr9 42264711 42264731 -75597896 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 353 296 0 22 chr9 42266088 42266267 -75596360 + (TA)n Simple_repeat Simple_repeat 2 176 0 228 174 0 0 chr9 42266296 42266342 -75596285 - LTR66 LTR ERVL -171 439 394 204 40 0 0 chr9 42266379 42266404 -75596223 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 253 58 0 chr9 42266492 42266579 -75596048 - L1MC4 LINE L1 -1337 6705 6614 698 120 0 0 chr9 42267527 42267635 -75594992 - L1MA2 LINE L1 0 6304 6197 207 0 0 0 chr9 42267723 42267746 -75594881 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2127 68 21 21 chr9 42268596 42268911 -75593716 + AluSg SINE Alu 2 316 0 1861 147 55 0 chr9 42268983 42269329 -75593298 - L1MB3 LINE L1 -1 6182 5818 317 229 24 0 chr9 42269341 42269424 -75593203 - L1MB3 LINE L1 -411 5772 5688 669 213 20 87 chr9 42269431 42269626 -75593001 - MIR SINE MIR -48 214 31 322 219 21 31 chr9 42269800 42269896 -75592731 + MER58C DNA MER1_type 24 118 -97 1716 204 0 7 chr9 42269905 42270213 -75592414 + AluJo SINE Alu 1 306 -6 317 214 0 12 chr9 42270220 42270304 -75592323 + GA-rich Low_complexity Low_complexity 3 85 0 374 240 39 0 chr9 42270308 42270412 -75592215 + MER58C DNA MER1_type 106 213 -2 2331 164 24 19 chr9 42270422 42270890 -75591737 - L1MA7 LINE L1 0 6291 5822 884 91 15 23 chr9 42272456 42272588 -75590039 - FLAM_C SINE Alu -2 131 1 2414 63 0 60 chr9 42273828 42274159 -75588468 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 42275369 42275390 -75587237 + AT_rich Low_complexity Low_complexity 1 21 0 1815 117 53 0 chr9 42277337 42277645 -75584982 + AluSc SINE Alu 1 322 0 21 0 0 0 chr9 42278964 42278985 -75583642 + AT_rich Low_complexity Low_complexity 1 21 0 2048 108 0 57 chr9 42278985 42279301 -75583326 + AluY SINE Alu 1 298 -13 543 193 0 93 chr9 42280430 42280591 -75582036 - L1ME1 LINE L1 -8 6158 6013 241 381 68 7 chr9 42282652 42282799 -75579828 + L2 LINE L2 3109 3264 -8 2152 126 0 0 chr9 42283244 42283546 -75579081 + AluY SINE Alu 4 305 -6 283 353 172 0 chr9 42284644 42284766 -75577861 - L2 LINE L2 -3 3269 3127 627 268 50 42 chr9 42285245 42285698 -75576929 + MLT1D LTR MaLR 7 505 0 192 77 0 0 chr9 42286076 42286102 -75576525 + (A)n Simple_repeat Simple_repeat 1 26 0 267 281 28 28 chr9 42286576 42286754 -75575873 + MLT1K LTR MaLR 88 265 -323 576 252 48 0 chr9 42286809 42286956 -75575671 - L2 LINE L2 0 3313 3160 312 312 208 9 chr9 42287011 42287232 -75575395 + MLT1K LTR MaLR 309 573 -15 187 350 21 57 chr9 42287506 42287700 -75574927 + L2 LINE L2 2738 2924 -390 1101 70 6 38 chr9 42288444 42288602 -75574025 - AluYb8 SINE Alu -165 153 1 1711 85 15 0 chr9 42289234 42289494 -75573133 + L1MA1 LINE L1 6039 6302 0 26 0 0 0 chr9 42289496 42289522 -75573105 + AT_rich Low_complexity Low_complexity 1 26 0 1773 139 0 0 chr9 42290365 42290617 -75572010 + AluSg SINE Alu 45 296 -14 611 85 0 0 chr9 42290805 42290887 -75571740 + L1PA4 LINE L1 7 88 -6058 31830 51 37 34 chr9 42290887 42296407 -75566220 + L1PA4 LINE L1 617 6152 -3 254 331 108 16 chr9 42296521 42296772 -75565855 + LTR16C LTR ERVL 169 442 -49 1305 175 59 20 chr9 42297244 42297547 -75565080 - LTR40b LTR ERVL 0 462 148 24 0 0 0 chr9 42297980 42298004 -75564623 + AT_rich Low_complexity Low_complexity 1 24 0 629 253 146 0 chr9 42300483 42300716 -75561911 - L1MC4 LINE L1 -180 7862 7596 610 103 0 0 chr9 42301096 42301183 -75561444 - AluSg/x SINE Alu -10 300 214 1143 111 6 12 chr9 42301183 42301345 -75561282 - AluSq SINE Alu -152 161 1 2409 70 0 23 chr9 42301995 42302297 -75560330 - AluSq SINE Alu -18 295 1 22 0 0 0 chr9 42303679 42303701 -75558926 + GC_rich Low_complexity Low_complexity 1 22 0 309 210 153 51 chr9 42304163 42304320 -75558307 - MER96B DNA MER1_type? -244 173 1 2104 85 24 3 chr9 42305009 42305302 -75557325 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr9 42306095 42306123 -75556504 + AT_rich Low_complexity Low_complexity 1 28 0 1970 141 0 16 chr9 42306482 42306787 -75555840 - AluSx SINE Alu -12 300 1 27 29 0 0 chr9 42308049 42308083 -75554544 + AT_rich Low_complexity Low_complexity 1 34 0 2320 110 0 3 chr9 42308385 42308695 -75553932 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 42310143 42310183 -75552444 + AT_rich Low_complexity Low_complexity 1 40 0 1301 99 10 20 chr9 42310600 42310774 -75551853 - AluY SINE Alu -7 304 131 383 0 21 0 chr9 42310774 42310821 -75551806 + (TG)n Simple_repeat Simple_repeat 2 49 0 1301 99 10 20 chr9 42310821 42310847 -75551780 - AluY SINE Alu -180 131 106 262 0 0 0 chr9 42310849 42310885 -75551742 - AluY SINE Alu -130 171 136 441 0 0 0 chr9 42310885 42310934 -75551693 + (TG)n Simple_repeat Simple_repeat 2 50 0 2324 69 10 0 chr9 42310935 42311226 -75551401 - AluY SINE Alu -17 294 1 2081 130 7 0 chr9 42311452 42311751 -75550876 + AluSx SINE Alu 1 301 -11 3652 117 71 23 chr9 42311762 42311989 -75550638 + L1PA15 LINE L1 5522 5737 -428 2274 88 0 0 chr9 42311989 42312294 -75550333 + AluY SINE Alu 1 305 -6 3652 117 71 23 chr9 42312294 42312674 -75549953 + L1PA15 LINE L1 5737 6158 -7 334 317 148 0 chr9 42312758 42312900 -75549727 + MIR SINE MIR 74 236 -26 2021 258 64 27 chr9 42313015 42314072 -75548555 + L1MEc LINE L1 1562 2617 -3598 2283 103 0 3 chr9 42314072 42314374 -75548253 - AluSq SINE Alu -12 301 1 2021 258 64 27 chr9 42314374 42314606 -75548021 + L1MEc LINE L1 2617 2839 -3376 262 308 65 33 chr9 42314589 42314803 -75547824 + L1MCa LINE L1 -260 4294967256 -6320 * 1896 238 26 34 chr9 42315297 42315927 -75546700 + L1M4 LINE L1 794 1709 -4594 2955 141 103 6 chr9 42315927 42316432 -75546195 + MER41C LTR ERV1 1 554 0 1896 238 26 34 chr9 42316432 42316511 -75546116 + L1M4 LINE L1 1709 1787 -4516 282 266 0 0 chr9 42316532 42316596 -75546031 + L1M4 LINE L1 1595 1658 -4726 * 5241 208 67 49 chr9 42316592 42316831 -75545796 + L1MCa LINE L1 -27 206 -6176 2126 128 10 0 chr9 42316831 42317136 -75545491 + AluSq SINE Alu 1 308 -5 5241 208 67 49 chr9 42317136 42319431 -75543196 + L1MCa LINE L1 206 2533 -3849 1249 202 96 22 chr9 42319624 42320000 -75542627 + LTR43 LTR ERV1 176 632 -2 5781 236 46 81 chr9 42320002 42322531 -75540096 + L1MCa LINE L1 2531 4970 -1412 1881 182 57 12 chr9 42322530 42322948 -75539679 + L1MC2 LINE L1 5907 6343 -1 * 1351 260 36 4 chr9 42322953 42323430 -75539197 + L1M4 LINE L1 2398 2889 -3493 516 286 17 47 chr9 42323434 42323610 -75539017 + L1MB8 LINE L1 1491 1660 -4724 2469 70 0 0 chr9 42323610 42323909 -75538718 + AluY SINE Alu 1 299 -12 516 286 17 47 chr9 42323909 42323966 -75538661 + L1MB8 LINE L1 1660 1717 -4667 4818 83 15 0 chr9 42324374 42325135 -75537492 + L1P3 LINE L1 4692 5461 -711 2427 45 7 7 chr9 42325158 42325466 -75537161 - AluY SINE Alu -3 308 1 964 111 177 22 chr9 42325466 42325647 -75536980 + THE1B LTR MaLR 156 364 0 1035 234 70 23 chr9 42325649 42326517 -75536110 + L1MB8 LINE L1 2616 3841 -2541 1621 219 50 50 chr9 42326520 42326999 -75535628 + L1MB8 LINE L1 5930 6408 -6 312 259 35 65 chr9 42327507 42327677 -75534950 + L1M4 LINE L1 3180 3344 -3038 2259 89 0 0 chr9 42327788 42328080 -75534547 - AluSc SINE Alu -17 292 1 715 234 30 52 chr9 42328457 42328715 -75533912 + L1MC4 LINE L1 7803 7995 0 1872 185 25 48 chr9 42329226 42329702 -75532925 - L1MA7 LINE L1 0 6291 5827 2575 192 35 79 chr9 42329714 42330489 -75532138 - L1 LINE L1 -2777 3369 2629 2463 65 3 3 chr9 42330518 42330826 -75531801 - AluY SINE Alu -1 310 3 23 78 0 0 chr9 42330880 42330931 -75531696 + AT_rich Low_complexity Low_complexity 1 51 0 24 77 0 0 chr9 42331548 42331600 -75531027 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 42332251 42332273 -75530354 + (T)n Simple_repeat Simple_repeat 1 22 0 1603 178 70 13 chr9 42332407 42332722 -75529905 + THE1C LTR MaLR 43 375 0 9853 106 36 50 chr9 42332722 42332852 -75529775 + THE1C-int LTR MaLR 1 131 -1449 2103 108 3 3 chr9 42332852 42333147 -75529480 + AluSq SINE Alu 5 299 -14 9853 106 36 50 chr9 42333147 42334618 -75528009 + THE1C-int LTR MaLR 131 1580 0 2131 128 56 14 chr9 42334618 42334978 -75527649 + THE1C LTR MaLR 1 375 0 713 150 0 0 chr9 42335341 42335484 -75527143 - AluSc SINE Alu 0 310 168 2006 187 13 33 chr9 42336109 42336559 -75526068 + MER66B LTR ERV1 46 486 0 325 290 131 9 chr9 42337529 42337636 -75524991 + MIR3 SINE MIR 14 133 -75 269 296 94 28 chr9 42338641 42338959 -75523668 - L1ME3A LINE L1 -222 5948 5610 2247 109 3 0 chr9 42339059 42339361 -75523266 - AluY SINE Alu -8 303 1 214 332 129 17 chr9 42339433 42339665 -75522962 - L2 LINE L2 -128 3185 2928 954 211 10 19 chr9 42339712 42339921 -75522706 + Tigger6a DNA MER2_type 5 211 -872 1654 224 41 37 chr9 42339921 42340380 -75522247 - MLT1C LTR MaLR 0 467 7 * 3390 184 93 33 chr9 42340367 42340989 -75521638 + Tigger6a DNA MER2_type 216 900 -697 1965 112 47 0 chr9 42340989 42341267 -75521360 + AluY SINE Alu 3 293 -18 3390 184 93 33 chr9 42341267 42341463 -75521164 + Tigger6a DNA MER2_type 900 1083 0 1595 176 39 73 chr9 42341984 42342280 -75520347 - MER67B LTR ERV1 -108 452 272 2120 115 24 0 chr9 42342280 42342576 -75520051 - AluSc SINE Alu -6 303 1 1595 176 39 73 chr9 42342576 42342840 -75519787 - MER67B LTR ERV1 -288 272 1 32 67 0 0 chr9 42343251 42343311 -75519316 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr9 42343348 42343369 -75519258 + AT_rich Low_complexity Low_complexity 1 21 0 760 111 133 0 chr9 42343509 42343644 -75518983 + AluSg/x SINE Alu 130 282 -28 21 0 0 0 chr9 42343932 42343953 -75518674 + AT_rich Low_complexity Low_complexity 1 21 0 1449 221 65 27 chr9 42343998 42344401 -75518226 + MER67B LTR ERV1 1 418 -243 2043 120 0 0 chr9 42346267 42346543 -75516084 - AluSc SINE Alu -33 276 1 264 241 65 42 chr9 42347137 42347292 -75515335 - L1M4 LINE L1 -1090 5056 4911 232 257 40 0 chr9 42347461 42347535 -75515092 - L1M4 LINE L1 -1437 4709 4633 * 570 273 105 28 chr9 42347534 42347704 -75514923 - L1M4 LINE L1 -2042 4104 3949 2263 90 0 10 chr9 42347704 42348003 -75514624 - AluY SINE Alu -15 296 1 570 273 105 28 chr9 42348003 42348195 -75514432 - L1M4 LINE L1 -2197 3949 3714 245 316 51 6 chr9 42348297 42348455 -75514172 - L1M4 LINE L1 -2607 3539 3375 662 229 89 128 chr9 42348475 42348749 -75513878 - L1ME3A LINE L1 -11 6159 5876 2408 69 0 10 chr9 42348749 42349052 -75513575 - AluY SINE Alu -11 300 1 662 229 89 128 chr9 42349052 42349136 -75513491 - L1ME3A LINE L1 -294 5876 5790 4448 144 68 25 chr9 42349136 42349607 -75513020 - L1MC1 LINE L1 -11 6322 5873 205 27 81 0 chr9 42349607 42349644 -75512983 + T-rich Low_complexity Low_complexity 1 40 0 2006 95 0 18 chr9 42349644 42349928 -75512699 - AluY SINE Alu -32 279 1 4448 144 68 25 chr9 42349928 42350306 -75512321 - L1MC1 LINE L1 -459 5874 5435 662 229 89 128 chr9 42350306 42350841 -75511786 - L1ME3A LINE L1 -380 5790 5310 285 234 78 26 chr9 42350844 42350998 -75511629 - L1ME3A LINE L1 -877 5269 5108 2174 74 10 17 chr9 42351024 42351321 -75511306 + AluY SINE Alu 1 295 -16 1481 141 36 62 chr9 42351584 42352010 -75510617 - LTR12 LTR ERV1 -234 480 1 288 318 127 62 chr9 42352019 42352485 -75510142 - L1MEd LINE L1 -5560 559 64 22 0 0 0 chr9 42353198 42353220 -75509407 + AT_rich Low_complexity Low_complexity 1 22 0 2846 19 0 0 chr9 42353544 42353859 -75508768 - AluYb8 SINE Alu -3 315 1 964 111 177 22 chr9 42353859 42354040 -75508587 + THE1B LTR MaLR 156 364 0 707 244 72 27 chr9 42354042 42354910 -75507717 + L1M4 LINE L1 2380 3605 -2541 1609 219 50 50 chr9 42354913 42355392 -75507235 + L1MB8 LINE L1 5694 6172 -6 312 259 35 65 chr9 42355900 42356070 -75506557 + L1M4 LINE L1 2944 3108 -3038 2259 89 0 0 chr9 42356181 42356473 -75506154 - AluSc SINE Alu -17 292 1 715 234 30 52 chr9 42356850 42357108 -75505519 + L1MC4 LINE L1 7803 7995 0 999 194 0 0 chr9 42358115 42358280 -75504347 - AluJb SINE Alu -15 297 133 1868 124 0 4 chr9 42358295 42358561 -75504066 + AluSc SINE Alu 35 299 -10 2272 91 17 0 chr9 42359340 42359637 -75502990 + AluSx SINE Alu 5 306 -6 746 86 17 0 chr9 42359774 42359890 -75502737 - AluY SINE Alu -4 307 190 653 107 183 0 chr9 42360005 42360136 -75502491 - AluY SINE Alu -156 155 1 200 279 29 0 chr9 42360420 42360488 -75502139 + T-rich Low_complexity Low_complexity 2 71 0 333 304 114 43 chr9 42360512 42360792 -75501835 - L1M4 LINE L1 -3131 3015 2716 2261 79 41 0 chr9 42361186 42361478 -75501149 - AluY SINE Alu -7 304 1 2823 201 78 13 chr9 42361750 42361807 -75500820 + L1MB7 LINE L1 5363 5415 -769 1459 198 58 68 chr9 42361807 42362201 -75500426 + MLT1B LTR MaLR 1 390 0 2823 201 78 13 chr9 42362201 42362823 -75499804 + L1MB7 LINE L1 5415 6086 -98 1758 171 24 3 chr9 42362825 42363123 -75499504 + MER2 DNA MER2_type 1 304 -41 422 117 13 26 chr9 42363123 42363200 -75499427 + L1MB8 LINE L1 6103 6178 0 2254 109 0 3 chr9 42363846 42364157 -75498470 + AluY SINE Alu 1 310 -1 2417 91 0 3 chr9 42364415 42364724 -75497903 + AluSc SINE Alu 1 308 -1 248 305 96 5 chr9 42366142 42366329 -75496298 - HAL1 LINE L1 -814 1693 1490 408 318 56 13 chr9 42366348 42366581 -75496046 + HAL1 LINE L1 1491 1733 -774 1526 191 3 7 chr9 42367265 42367572 -75495055 + AluSx SINE Alu 1 306 0 4965 143 50 32 chr9 42367782 42368300 -75494327 - L1MA9 LINE L1 0 6312 5768 246 32 0 0 chr9 42368300 42368331 -75494296 + (TG)n Simple_repeat Simple_repeat 2 32 0 4965 143 50 32 chr9 42368331 42368776 -75493851 - L1MA9 LINE L1 -544 5768 5332 2063 161 42 31 chr9 42368776 42369136 -75493491 + THE1B LTR MaLR 1 364 0 11446 128 9 0 chr9 42369136 42370702 -75491925 + THE1B-int LTR MaLR 1 1580 0 2170 147 35 46 chr9 42370702 42370998 -75491629 + THE1B LTR MaLR 1 294 -70 2240 110 0 0 chr9 42370998 42371288 -75491339 - AluY SINE Alu -21 290 1 2170 147 35 46 chr9 42371288 42371359 -75491268 + THE1B LTR MaLR 294 364 0 4596 212 63 17 chr9 42371369 42372228 -75490399 - L1MA9 LINE L1 -857 5289 4366 1898 99 91 0 chr9 42372228 42372491 -75490136 - AluY SINE Alu -24 287 1 4596 212 63 17 chr9 42372491 42372747 -75489880 - L1MA9 LINE L1 -1780 4366 4123 5662 216 83 32 chr9 42372764 42373135 -75489492 + L1MCa LINE L1 1773 2124 -4302 2037 184 24 0 chr9 42373135 42373471 -75489156 - MER7A DNA MER2_type -1 345 4 5662 216 83 32 chr9 42373471 42374719 -75487908 + L1MCa LINE L1 2124 3552 -2874 2003 94 25 0 chr9 42374719 42375029 -75487598 + AluY SINE Alu 1 317 0 5662 216 83 32 chr9 42375029 42375466 -75487161 + L1MCa LINE L1 3552 3965 -2461 14576 137 28 15 chr9 42375589 42377936 -75484691 + Tigger1 DNA MER2_type 1 2377 -41 296 163 0 0 chr9 42378153 42378196 -75484431 + Tigger1 DNA MER2_type 2375 2417 -1 2202 250 58 42 chr9 42378354 42379082 -75483545 + L1M2 LINE L1 2 1126 -5722 4094 86 17 0 chr9 42379086 42379612 -75483015 + L1PA10 LINE L1 5629 6163 -5 326 169 11 0 chr9 42380079 42380168 -75482459 + C-rich Low_complexity Low_complexity 3 92 0 315 0 0 0 chr9 42381040 42381075 -75481552 + (TG)n Simple_repeat Simple_repeat 2 36 0 1947 128 11 3 chr9 42381101 42381437 -75481190 - AluSx SINE Alu 0 338 1 2030 142 3 0 chr9 42387642 42387937 -75474690 - AluSq SINE Alu -17 296 1 2198 110 3 10 chr9 42390318 42390618 -75472009 - AluSx SINE Alu -14 298 1 21 36 0 0 chr9 42391646 42391674 -75470953 + AT_rich Low_complexity Low_complexity 1 28 0 2218 104 0 22 chr9 42391761 42392078 -75470549 - AluY SINE Alu -1 310 1 2272 82 3 28 chr9 42393502 42393821 -75468806 + AluY SINE Alu 1 311 0 199 256 256 22 chr9 42394187 42394324 -75468303 + MIR SINE MIR 21 189 -73 2253 101 10 7 chr9 42394449 42394755 -75467872 + AluSq SINE Alu 1 307 -6 399 315 78 17 chr9 42395295 42395527 -75467100 - MER41B LTR ERV1 -209 426 181 549 108 0 0 chr9 42396887 42396961 -75465666 - MLT1B LTR MaLR 0 390 317 3158 42 5 23 chr9 42396979 42397365 -75465262 - L1PA3 LINE L1 0 6155 5777 1773 172 12 15 chr9 42397365 42397697 -75464930 - MLT1B LTR MaLR -59 331 1 2233 114 0 10 chr9 42397751 42398059 -75464568 + AluSq SINE Alu 1 305 -8 414 0 0 0 chr9 42398404 42398450 -75464177 + (TA)n Simple_repeat Simple_repeat 2 47 0 3232 132 31 19 chr9 42399354 42399466 -75463161 - L1MA8 LINE L1 -172 6119 6008 1665 269 92 16 chr9 42399466 42400131 -75462496 - L1PA10 LINE L1 -161 6007 5293 1246 173 235 12 chr9 42400477 42400801 -75461826 + MSTD LTR MaLR 1 396 0 2334 190 7 17 chr9 42400854 42401270 -75461357 - LOR1b LTR ERV1 0 461 50 292 323 10 50 chr9 42401331 42401430 -75461197 - L2 LINE L2 -42 3230 3136 2446 89 0 0 chr9 42401672 42401974 -75460653 + AluSg SINE Alu 1 302 -8 1889 248 105 40 chr9 42401974 42402632 -75459995 + L1ME1 LINE L1 5462 6162 -4 206 143 61 0 chr9 42402645 42402694 -75459933 + (TA)n Simple_repeat Simple_repeat 2 53 0 2318 58 24 17 chr9 42402729 42403022 -75459605 - AluY SINE Alu -16 295 1 251 346 94 24 chr9 42403296 42403423 -75459204 - L2 LINE L2 0 3272 3137 2457 77 0 3 chr9 42403939 42404239 -75458388 + AluY SINE Alu 1 299 -12 2059 120 41 0 chr9 42405697 42405988 -75456639 + AluSp SINE Alu 1 303 -10 473 273 165 6 chr9 42406115 42406291 -75456336 + MIR SINE MIR 59 262 0 1999 190 14 11 chr9 42406469 42406833 -75455794 - MLT1A1 LTR MaLR 0 365 1 274 150 0 67 chr9 42407149 42407209 -75455418 + L1MB7 LINE L1 6128 6183 -1 5714 124 22 4 chr9 42407466 42408310 -75454317 - Tigger1 DNA MER2_type -1554 864 5 2396 86 10 0 chr9 42408311 42408615 -75454012 + AluSp SINE Alu 1 307 -6 1488 243 18 47 chr9 42408622 42409181 -75453446 + L1M4 LINE L1 3087 3629 -2517 23 0 0 0 chr9 42409937 42409960 -75452667 + AT_rich Low_complexity Low_complexity 1 23 0 2072 110 13 7 chr9 42411215 42411515 -75451112 - AluSx SINE Alu -10 302 1 963 124 7 0 chr9 42411768 42411913 -75450714 + L1P LINE L1 687 832 -5314 1960 153 0 3 chr9 42415864 42416152 -75446475 - AluJo SINE Alu -25 287 1 565 279 64 45 chr9 42416282 42416594 -75446033 + L1MDa LINE L1 34 351 -6189 807 236 66 18 chr9 42417054 42417388 -75445239 + L1M4 LINE L1 2669 3018 -3128 24 77 0 0 chr9 42418098 42418150 -75444477 + AT_rich Low_complexity Low_complexity 1 52 0 198 0 0 0 chr9 42418801 42418823 -75443804 + (T)n Simple_repeat Simple_repeat 1 22 0 1578 165 70 13 chr9 42418957 42419272 -75443355 + THE1C LTR MaLR 43 375 0 716 122 8 8 chr9 42419272 42419395 -75443232 + THE1C-int LTR MaLR 1 123 -1457 1951 119 43 0 chr9 42419395 42419673 -75442954 + AluSx SINE Alu 1 290 -22 373 265 95 45 chr9 42419728 42419928 -75442699 + L1M4 LINE L1 3134 3343 -2803 678 237 60 30 chr9 42419937 42420169 -75442458 - MLT1A1 LTR MaLR 0 365 127 357 24 0 0 chr9 42420484 42420526 -75442101 + (TG)n Simple_repeat Simple_repeat 1 42 0 727 231 25 17 chr9 42420532 42420770 -75441857 + L1M4 LINE L1 3509 3748 -2398 1099 257 151 7 chr9 42420976 42421552 -75441075 + L1M4 LINE L1 3995 4653 -1493 1147 232 37 13 chr9 42421574 42421954 -75440673 + L1M4 LINE L1 4724 5112 -1034 304 250 64 104 chr9 42421980 42422133 -75440494 - L1MDa LINE L1 -5517 1023 880 2219 112 13 0 chr9 42422133 42422436 -75440191 - AluSq SINE Alu -6 307 1 304 250 64 104 chr9 42422436 42422502 -75440125 - L1MDa LINE L1 -5660 880 813 1432 186 8 12 chr9 42422567 42422814 -75439813 - AluSx SINE Alu -66 246 1 295 118 39 0 chr9 42422814 42422865 -75439762 + Tigger1 DNA MER2_type 45 97 -2321 2358 82 0 0 chr9 42422969 42423273 -75439354 + AluSx SINE Alu 5 308 -4 2331 97 0 3 chr9 42423273 42423582 -75439045 + AluSc SINE Alu 1 308 -1 2021 70 59 7 chr9 42423990 42424292 -75438335 + AluY SINE Alu 1 316 0 2226 117 0 3 chr9 42424298 42424598 -75438029 + AluSx SINE Alu 1 299 -13 363 342 186 30 chr9 42426025 42426444 -75436183 - L3 LINE CR1 -227 1350 998 2246 98 3 13 chr9 42426444 42426750 -75435877 - AluSg SINE Alu -7 303 1 363 342 186 30 chr9 42426750 42426970 -75435657 - L3 LINE CR1 -579 998 611 4399 225 37 51 chr9 42427454 42427633 -75434994 + L1M4 LINE L1 3776 3956 -2190 1994 132 3 38 chr9 42427633 42427952 -75434675 + AluSg SINE Alu 1 308 -2 4399 225 37 51 chr9 42427952 42428196 -75434431 + L1M4 LINE L1 3956 4202 -1944 2448 84 0 0 chr9 42428196 42428506 -75434121 + AluY SINE Alu 1 310 -1 4399 225 37 51 chr9 42428506 42429659 -75432968 + L1M4 LINE L1 4202 5330 -816 2225 111 0 0 chr9 42429660 42429957 -75432670 + AluSg SINE Alu 1 297 -13 1651 69 0 28 chr9 42430477 42430695 -75431932 - AluY SINE Alu -2 309 98 1722 70 58 4 chr9 42430795 42431037 -75431590 + AluY SINE Alu 53 307 -4 2181 106 17 0 chr9 42431174 42431466 -75431161 - AluSx SINE Alu -11 301 5 2149 120 0 3 chr9 42432255 42432555 -75430072 - AluSc SINE Alu -10 299 1 2413 77 0 6 chr9 42432806 42433118 -75429509 + AluY SINE Alu 1 310 -1 1007 194 0 0 chr9 42433713 42433878 -75428749 - AluJb SINE Alu -15 297 133 270 179 30 30 chr9 42434267 42434334 -75428293 + (CATA)n Simple_repeat Simple_repeat 2 68 0 2060 143 10 7 chr9 42434360 42434668 -75427959 + AluSg1 SINE Alu 1 309 0 1022 107 24 48 chr9 42434937 42435105 -75427522 + LTR1 LTR ERV1 622 785 0 297 183 7 33 chr9 42435187 42435344 -75427283 + CT-rich Low_complexity Low_complexity 1 152 0 11389 155 10 19 chr9 42435395 42436797 -75425830 + L1PA13 LINE L1 3142 4509 -1654 2339 110 0 0 chr9 42436797 42437098 -75425529 + AluSc SINE Alu 1 301 -8 11389 155 10 19 chr9 42437098 42438062 -75424565 + L1PA13 LINE L1 4509 5480 -683 265 155 113 0 chr9 42438068 42438139 -75424488 + L1M4 LINE L1 2617 2695 -3451 1537 104 0 0 chr9 42438226 42438447 -75424180 - L1PA13 LINE L1 -4 6159 5939 4020 109 32 0 chr9 42438481 42439104 -75423523 + L1PA13 LINE L1 5476 6118 -45 1244 135 69 22 chr9 42439147 42439421 -75423206 + LTR1 LTR ERV1 1 287 -498 2299 58 4 0 chr9 42439459 42439737 -75422890 - AluY SINE Alu -32 279 1 524 92 53 0 chr9 42439952 42440028 -75422599 - MADE1 DNA Mariner 0 80 1 1088 159 95 4 chr9 42440787 42441019 -75421608 - MLT1C LTR MaLR 0 467 215 1549 206 16 44 chr9 42441408 42441723 -75420904 - AluJo SINE Alu -6 306 1 2199 164 51 7 chr9 42441881 42442295 -75420332 + MSTB1 LTR MaLR 1 432 0 1553 176 0 70 chr9 42442560 42442730 -75419897 - AluJo SINE Alu 0 306 166 2810 91 3 0 chr9 42442730 42443093 -75419534 - THE1B LTR MaLR 0 364 1 1553 176 0 70 chr9 42443093 42443249 -75419378 - AluJo SINE Alu -140 166 1 2099 107 10 13 chr9 42444595 42444893 -75417734 + AluSq SINE Alu 1 297 -16 2345 103 0 3 chr9 42445443 42445755 -75416872 - AluSx SINE Alu -1 311 1 441 330 44 19 chr9 42448384 42448699 -75413928 + L1M4 LINE L1 4573 4895 -1251 23 33 0 0 chr9 42448758 42448788 -75413839 + AT_rich Low_complexity Low_complexity 1 30 0 775 297 127 49 chr9 42448930 42449343 -75413284 + L1M4 LINE L1 4470 4849 -1297 2188 74 0 45 chr9 42449343 42449678 -75412949 + AluSx SINE Alu 1 312 0 775 297 127 49 chr9 42449678 42449898 -75412729 + L1M4 LINE L1 4849 5050 -1096 2356 68 7 0 chr9 42449898 42450191 -75412436 - AluY SINE Alu -16 295 1 775 297 127 49 chr9 42450191 42450311 -75412316 + L1M4 LINE L1 5050 5283 -863 2458 67 0 0 chr9 42450487 42450787 -75411840 - AluY SINE Alu -11 300 1 370 137 42 63 chr9 42451554 42451649 -75410978 - L1MD2 LINE L1 -2 6357 6265 946 100 0 15 chr9 42452565 42452695 -75409932 - AluSc SINE Alu -181 128 1 2398 96 0 3 chr9 42453138 42453451 -75409176 + AluSx SINE Alu 1 312 0 402 220 52 14 chr9 42454250 42454413 -75408214 - L1MA10 LINE L1 -10 6315 5985 249 92 53 79 chr9 42454425 42454501 -75408126 - L1M4 LINE L1 -1690 4456 4383 1046 91 0 0 chr9 42454520 42454652 -75407975 - AluY SINE Alu -179 132 1 258 260 70 0 chr9 42454674 42454774 -75407853 - L1M4 LINE L1 -1783 4363 4257 924 234 167 21 chr9 42454806 42455190 -75407437 - L1M4 LINE L1 -1871 4275 3836 4371 168 25 11 chr9 42455197 42456098 -75406529 - L1MB1 LINE L1 -1 6167 5254 3564 197 42 2 chr9 42456099 42456925 -75405702 - L1MB1 LINE L1 -1085 5061 4203 349 247 0 0 chr9 42457651 42457740 -75404887 - L1MB1 LINE L1 -2104 4042 3954 4403 166 22 12 chr9 42457828 42458733 -75403894 - L1MB1 LINE L1 -1 6167 5254 7337 200 30 3 chr9 42458734 42460463 -75402164 - L1MB1 LINE L1 -1085 5061 3288 1772 251 44 7 chr9 42460485 42461095 -75401532 - L1MB1 LINE L1 -2291 3855 3223 626 202 113 8 chr9 42461088 42461326 -75401301 - L1MEc LINE L1 -3961 2435 2173 * 3161 138 77 45 chr9 42461376 42461689 -75400938 + MER4D LTR ERV1 1 303 -600 2192 119 0 19 chr9 42461689 42462007 -75400620 - AluSx SINE Alu 0 312 1 3161 138 77 45 chr9 42462007 42462330 -75400297 + MER4D LTR ERV1 303 657 -246 1901 181 44 29 chr9 42462379 42462917 -75399710 + MLT2A2 LTR ERVL 1 554 0 1173 177 5 0 chr9 42462918 42463127 -75399500 + MER4B LTR ERV1 399 608 -2 895 192 48 24 chr9 42463131 42463381 -75399246 - L1MEc LINE L1 -4300 2096 1841 4956 138 26 2 chr9 42463388 42464200 -75398427 + L1PA5 LINE L1 2 832 -5314 29806 54 8 8 chr9 42464213 42469179 -75393448 + L1PA5 LINE L1 1178 6141 -13 1272 276 66 47 chr9 42469202 42469750 -75392877 - L1MEc LINE L1 -4547 1849 1276 2085 139 0 3 chr9 42469750 42470053 -75392574 - AluSx SINE Alu -10 302 1 1272 276 66 47 chr9 42470053 42470411 -75392216 - L1MEc LINE L1 -5120 1276 926 * 1384 224 154 4 chr9 42470405 42470886 -75391741 - L1MCa LINE L1 -3981 2445 1893 1700 162 36 12 chr9 42470938 42471272 -75391355 - L1MB4 LINE L1 0 6180 5839 1126 208 34 0 chr9 42471272 42471508 -75391119 + MLT1B LTR MaLR 9 252 -138 2121 64 38 0 chr9 42471509 42471776 -75390851 + AluY SINE Alu 3 279 -32 216 0 0 0 chr9 42471776 42471800 -75390827 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2069 71 0 8 chr9 42471805 42472093 -75390534 + AluY SINE Alu 41 311 0 40 37 0 0 chr9 42472328 42472382 -75390245 + AT_rich Low_complexity Low_complexity 1 54 0 470 275 150 26 chr9 42473807 42474000 -75388627 - MLT1I LTR MaLR -192 217 1 7806 184 32 21 chr9 42475092 42476458 -75386169 + L1PB4 LINE L1 3167 4559 -1587 1811 86 55 24 chr9 42476458 42476713 -75385914 + AluY SINE Alu 35 297 -14 7806 184 32 21 chr9 42476713 42477113 -75385514 + L1PB4 LINE L1 4559 4953 -1193 257 231 0 0 chr9 42477120 42477172 -75385455 + LTR30 LTR ERV1 1 52 -670 2054 139 14 99 chr9 42477195 42477611 -75385016 + LTR12 LTR ERV1 100 480 -234 4260 159 54 36 chr9 42477612 42477962 -75384665 + L1PB4 LINE L1 4957 5299 -857 1707 135 25 53 chr9 42477962 42478281 -75384346 + AluSx SINE Alu 1 310 -2 4260 159 54 36 chr9 42478281 42479091 -75383536 + L1PB4 LINE L1 5299 6156 0 2075 111 0 13 chr9 42479601 42479899 -75382728 + AluSx SINE Alu 1 294 -18 212 221 88 29 chr9 42480741 42480809 -75381818 - MIR SINE MIR -145 117 46 1994 101 42 39 chr9 42481096 42481404 -75381223 - AluSg SINE Alu -1 309 1 301 295 101 17 chr9 42481465 42481669 -75380958 + L1MC2 LINE L1 5693 5819 -302 311 320 38 94 chr9 42481908 42481965 -75380662 + MER68 LTR ERV1 234 293 -269 1625 91 0 5 chr9 42481965 42482185 -75380442 - AluSq SINE Alu -12 301 83 311 320 38 94 chr9 42482185 42482468 -75380159 + MER68 LTR ERV1 293 555 -7 1523 46 0 0 chr9 42483663 42483836 -75378791 + AluY SINE Alu 1 173 -138 398 318 56 13 chr9 42484529 42484762 -75377865 - HAL1 LINE L1 -774 1733 1491 245 309 90 5 chr9 42484781 42484969 -75377658 + HAL1 LINE L1 1490 1693 -814 2066 140 0 3 chr9 42486400 42486708 -75375919 - AluSc SINE Alu 0 309 3 371 180 34 0 chr9 42486977 42487066 -75375561 + L1M4 LINE L1 2866 2957 -3189 4647 238 50 56 chr9 42487177 42488953 -75373674 + L1M4 LINE L1 2969 4733 -1413 1877 177 57 12 chr9 42488953 42489371 -75373256 + L1MC2 LINE L1 5907 6343 -1 1363 258 36 4 chr9 42489376 42489853 -75372774 + L1M4 LINE L1 2162 2653 -3493 509 291 17 47 chr9 42489857 42490033 -75372594 + L1MB8 LINE L1 1491 1660 -4724 2425 74 0 0 chr9 42490033 42490329 -75372298 + AluY SINE Alu 1 296 -15 509 291 17 47 chr9 42490329 42490386 -75372241 + L1MB8 LINE L1 1660 1717 -4667 4956 88 9 0 chr9 42490809 42491574 -75371053 + L1P3 LINE L1 4692 5460 -694 962 111 177 22 chr9 42491574 42491755 -75370872 + THE1B LTR MaLR 156 364 0 1141 237 60 27 chr9 42491757 42492632 -75369995 + L1MB8 LINE L1 2616 3841 -2541 1600 217 50 50 chr9 42492635 42493114 -75369513 + L1MB8 LINE L1 5930 6408 -6 2456 50 0 20 chr9 42493607 42493906 -75368721 + AluY SINE Alu 1 293 -18 283 265 35 65 chr9 42493948 42494118 -75368509 + L1M4 LINE L1 2944 3108 -3038 2351 80 0 0 chr9 42494229 42494528 -75368099 - AluSc SINE Alu -10 299 1 755 234 32 52 chr9 42494901 42495158 -75367469 + L1MC4 LINE L1 7803 7995 0 1845 183 34 47 chr9 42496413 42496884 -75365743 - L1MA7 LINE L1 0 6291 5827 2606 201 35 77 chr9 42496896 42497699 -75364928 - L1MCa LINE L1 -2777 3649 2881 2555 58 0 3 chr9 42497700 42498011 -75364616 - AluY SINE Alu -1 310 1 237 232 29 14 chr9 42498068 42498137 -75364490 - L1MCa LINE L1 -5042 1384 1315 201 39 0 0 chr9 42499923 42499949 -75362678 + (CA)n Simple_repeat Simple_repeat 2 27 0 962 268 92 31 chr9 42500537 42501041 -75361586 + L2 LINE L2 2606 3148 -165 797 232 116 72 chr9 42501436 42501724 -75360903 + L1MC5 LINE L1 7300 7574 -387 2096 109 0 53 chr9 42501724 42502046 -75360581 + AluSx SINE Alu 1 305 -7 797 232 116 72 chr9 42502046 42502378 -75360249 + L1MC5 LINE L1 7574 7947 -14 1445 209 0 35 chr9 42502606 42502929 -75359698 + AluJo SINE Alu 11 323 0 2398 81 0 0 chr9 42503112 42503410 -75359217 - AluY SINE Alu -13 298 1 211 215 13 25 chr9 42503436 42503497 -75359130 + (CATATA)n Simple_repeat Simple_repeat 2 63 -16 342 104 0 0 chr9 42503497 42503545 -75359082 - L1MC1 LINE L1 -17 6316 6269 211 215 13 25 chr9 42503545 42503562 -75359065 + (CATATA)n Simple_repeat Simple_repeat 63 79 0 4526 139 64 31 chr9 42503562 42504043 -75358584 - L1MC1 LINE L1 -11 6322 5799 2222 92 0 16 chr9 42504043 42504359 -75358268 - AluY SINE Alu 0 311 1 4526 139 64 31 chr9 42504359 42504737 -75357890 - L1MC1 LINE L1 -534 5799 5435 663 266 93 83 chr9 42504755 42505237 -75357390 - L1ME3A LINE L1 -329 5841 5355 310 279 58 7 chr9 42505274 42505428 -75357199 - L1ME3A LINE L1 -877 5269 5108 2253 67 7 20 chr9 42505454 42505752 -75356875 + AluY SINE Alu 1 294 -17 21 0 0 0 chr9 42505803 42505824 -75356803 + AT_rich Low_complexity Low_complexity 1 21 0 696 102 0 0 chr9 42506014 42506112 -75356515 - LTR12 LTR ERV1 0 714 617 230 228 98 11 chr9 42506112 42506204 -75356423 - LTR30 LTR ERV1 -70 652 553 630 119 45 95 chr9 42506205 42506440 -75356187 - LTR12 LTR ERV1 -429 285 1 298 302 130 66 chr9 42506449 42506902 -75355725 - L1MEd LINE L1 -5560 559 78 2188 119 0 3 chr9 42508111 42508423 -75354204 + AluY SINE Alu 1 311 0 2418 88 0 3 chr9 42508670 42508978 -75353649 + AluSc SINE Alu 3 309 0 369 285 51 68 chr9 42509826 42510061 -75352566 - MER67C LTR ERV1 -479 231 1 279 255 64 64 chr9 42510438 42510590 -75352037 - MIR3 SINE MIR -36 172 3 288 197 13 40 chr9 42510779 42510855 -75351772 - MER92C LTR ERV1 -2 552 479 1005 215 10 0 chr9 42510902 42511097 -75351530 - MER92C LTR ERV1 -170 384 188 2499 77 0 3 chr9 42511212 42511522 -75351105 + AluY SINE Alu 3 311 0 5905 218 50 45 chr9 42511906 42513257 -75349370 + MLT1A1-int LTR MaLR 379 1735 0 805 213 108 54 chr9 42513257 42513391 -75349236 + MLT1A1 LTR MaLR 1 126 -270 1463 203 140 9 chr9 42513391 42513741 -75348886 - MSTD LTR MaLR 0 396 1 805 213 108 54 chr9 42513741 42513944 -75348683 + MLT1A1 LTR MaLR 126 396 0 880 293 285 41 chr9 42513944 42514776 -75347851 + L2 LINE L2 1459 2493 -821 854 290 58 17 chr9 42514840 42515161 -75347466 - MLT1H LTR MaLR -237 312 4 555 326 79 9 chr9 42515372 42515599 -75347028 + L2 LINE L2 2828 3070 -243 1754 132 17 7 chr9 42516092 42516387 -75346240 - L1MA9 LINE L1 -59 6253 5956 982 241 91 18 chr9 42516389 42516729 -75345898 - L1M4 LINE L1 -1473 4673 4309 240 250 62 10 chr9 42516734 42516830 -75345797 - L1M4 LINE L1 -3002 3144 3044 2404 196 25 6 chr9 42516832 42517322 -75345305 + L1 LINE L1 4660 5158 -988 404 239 37 69 chr9 42517325 42517543 -75345084 - L1M4 LINE L1 -955 5191 4981 410 267 14 48 chr9 42517695 42517772 -75344855 + L1M4 LINE L1 4865 4943 -1203 1801 201 23 58 chr9 42517772 42517976 -75344651 + MLT2D LTR ERVL 1 211 -203 2393 64 11 0 chr9 42517976 42518280 -75344347 + AluY SINE Alu 1 307 0 1801 201 23 58 chr9 42518280 42518451 -75344176 + MLT2D LTR ERVL 211 363 -51 237 108 0 0 chr9 42518451 42518488 -75344139 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1801 201 23 58 chr9 42518488 42518539 -75344088 + MLT2D LTR ERVL 363 414 0 410 267 14 48 chr9 42518539 42518607 -75344020 + L1M4 LINE L1 4943 5005 -1141 32 57 0 0 chr9 42518667 42518720 -75343907 + AT_rich Low_complexity Low_complexity 1 53 0 341 259 38 51 chr9 42518792 42518950 -75343677 - MIR SINE MIR -5 257 102 2469 70 0 3 chr9 42519036 42519338 -75343289 + AluY SINE Alu 1 301 -10 38 61 0 0 chr9 42519561 42519627 -75343000 + AT_rich Low_complexity Low_complexity 1 66 0 198 270 0 45 chr9 42520431 42520520 -75342107 + MIR SINE MIR 64 148 -114 1822 125 0 4 chr9 42521060 42521308 -75341319 + AluSx SINE Alu 44 290 -22 210 71 0 0 chr9 42521531 42521559 -75341068 + (CA)n Simple_repeat Simple_repeat 2 29 0 2824 10 0 0 chr9 42521616 42521917 -75340710 + AluYa5 SINE Alu 1 301 -10 387 162 0 0 chr9 42522622 42522690 -75339937 - MSTA LTR MaLR 0 428 361 25 90 0 0 chr9 42524076 42524143 -75338484 + AT_rich Low_complexity Low_complexity 1 67 0 1905 119 43 36 chr9 42524383 42524685 -75337942 + AluSx SINE Alu 1 304 -8 2153 133 0 3 chr9 42526496 42526805 -75335822 + AluSg SINE Alu 1 308 -2 180 174 65 0 chr9 42526983 42527029 -75335598 - MIR SINE MIR -118 144 96 1170 171 20 0 chr9 42527439 42527638 -75334989 - LTR12 LTR ERV1 -133 581 379 288 328 16 0 chr9 42527640 42527765 -75334862 - LTR30 LTR ERV1 -79 643 517 834 80 18 0 chr9 42527787 42527900 -75334727 - LTR12 LTR ERV1 -599 115 1 2165 117 3 16 chr9 42527912 42528228 -75334399 - AluSq SINE Alu -1 312 1 274 192 0 0 chr9 42528230 42528282 -75334345 - MER5A DNA MER1_type -115 74 23 4214 134 56 42 chr9 42528301 42528449 -75334178 - LTR39 LTR ERV1 -18 765 620 2456 46 0 0 chr9 42528449 42528752 -75333875 - AluY SINE Alu 0 303 1 4214 134 56 42 chr9 42528752 42529357 -75333270 - LTR39 LTR ERV1 -163 620 1 390 272 64 16 chr9 42529426 42529551 -75333076 - MER58B DNA MER1_type -14 327 197 2502 69 0 3 chr9 42529555 42529860 -75332767 + AluY SINE Alu 1 304 -7 228 62 250 0 chr9 42530253 42530301 -75332326 + AluSc SINE Alu 238 297 -2 2508 82 0 0 chr9 42532111 42532417 -75330210 + AluY SINE Alu 1 306 -5 2348 82 10 3 chr9 42532443 42532737 -75329890 + AluY SINE Alu 2 297 -14 2237 115 0 0 chr9 42532764 42533068 -75329559 + AluSx SINE Alu 5 308 -4 1145 95 0 0 chr9 42533081 42533228 -75329399 + AluSq SINE Alu 152 298 -15 240 200 0 0 chr9 42533705 42533745 -75328882 + LTR40a LTR ERVL 6 45 -474 321 262 66 0 chr9 42533853 42533975 -75328652 - L1M3e LINE L1 -5546 1484 1355 * 758 196 7 20 chr9 42533974 42534127 -75328500 - L1M3e LINE L1 -6879 151 1 2122 138 0 3 chr9 42534598 42534910 -75327717 + AluSx SINE Alu 2 312 0 180 174 65 0 chr9 42535086 42535132 -75327495 - MIR SINE MIR -118 144 96 1270 113 148 0 chr9 42535541 42535744 -75326883 - LTR12 LTR ERV1 0 714 482 268 304 32 16 chr9 42535746 42535871 -75326756 - LTR30 LTR ERV1 -79 643 517 834 66 10 0 chr9 42535871 42536006 -75326621 - LTR12 LTR ERV1 -463 251 1 2161 120 3 16 chr9 42536018 42536334 -75326293 - AluSq SINE Alu -1 312 1 274 192 0 0 chr9 42536336 42536388 -75326239 - MER5A DNA MER1_type -115 74 23 4119 138 56 44 chr9 42536407 42536555 -75326072 - LTR39 LTR ERV1 -18 765 620 2441 46 0 0 chr9 42536555 42536858 -75325769 - AluY SINE Alu 0 303 1 4119 138 56 44 chr9 42536858 42537464 -75325163 - LTR39 LTR ERV1 -163 620 1 400 272 64 16 chr9 42537533 42537658 -75324969 - MER58B DNA MER1_type -14 327 197 2331 59 6 56 chr9 42537662 42537983 -75324644 + AluY SINE Alu 1 305 -6 2591 47 0 3 chr9 42538985 42539286 -75323341 + AluY SINE Alu 1 300 -11 1792 127 65 10 chr9 42539334 42539626 -75323001 + AluSx SINE Alu 1 308 -4 372 217 0 0 chr9 42539743 42539835 -75322792 + CT-rich Low_complexity Low_complexity 4 95 0 466 276 116 88 chr9 42540535 42540991 -75321636 - L2 LINE L2 0 3313 2845 33 56 0 0 chr9 42541206 42541260 -75321367 + AT_rich Low_complexity Low_complexity 1 54 0 2397 82 0 0 chr9 42541415 42541707 -75320920 + AluSg SINE Alu 1 292 -18 1196 99 0 163 chr9 42542473 42542694 -75319933 - AluSq SINE Alu -128 185 1 770 200 65 0 chr9 42542698 42542926 -75319701 - L1M4 LINE L1 -741 5437 5197 2879 216 61 26 chr9 42543026 42543101 -75319526 - L1M4 LINE L1 -913 5233 5162 2085 131 0 0 chr9 42543101 42543391 -75319236 + AluSx SINE Alu 1 290 -22 2879 216 61 26 chr9 42543391 42543414 -75319213 - L1M4 LINE L1 -984 5162 5141 382 158 0 13 chr9 42543414 42543490 -75319137 - L1MA7 LINE L1 -7 6284 6210 2879 216 61 26 chr9 42543490 42544277 -75318350 - L1M4 LINE L1 -1005 5141 4316 1854 142 129 3 chr9 42544277 42544609 -75318018 - MER57A LTR ERV1 -25 378 5 1646 169 38 0 chr9 42544611 42544878 -75317749 + AluJo SINE Alu 19 295 -17 2369 109 0 0 chr9 42545025 42545337 -75317290 + AluSx SINE Alu 1 312 0 31 26 0 0 chr9 42545372 42545410 -75317217 + AT_rich Low_complexity Low_complexity 1 38 0 517 251 73 17 chr9 42545570 42545749 -75316878 - L1MC4 LINE L1 -140 7902 7714 1884 210 59 0 chr9 42545751 42546142 -75316485 - L1MC4 LINE L1 -371 7671 7258 409 279 71 14 chr9 42546779 42546919 -75315708 + MIR SINE MIR 72 219 -43 188 33 0 33 chr9 42546992 42547022 -75315605 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2668 208 125 81 chr9 42547080 42548027 -75314600 + LTR28 LTR ERV1 1 988 -32 430 159 75 37 chr9 42548029 42548136 -75314491 + LTR27 LTR ERV1 525 635 -1 4120 129 29 2 chr9 42548242 42548860 -75313767 + MER41B LTR ERV1 1 635 0 252 191 0 0 chr9 42549125 42549172 -75313455 - MIR SINE MIR -133 129 83 862 220 18 35 chr9 42550040 42550267 -75312360 - L1M4 LINE L1 -1825 4321 4099 1311 182 17 4 chr9 42550273 42550504 -75312123 - MER54B LTR ERVL 0 793 560 499 192 115 10 chr9 42550499 42550603 -75312024 - MER54A LTR ERVL -271 630 516 * 1894 110 4 0 chr9 42553838 42554093 -75308534 - AluSx SINE Alu -13 299 44 535 133 0 22 chr9 42554115 42554205 -75308422 - AluS SINE Alu -224 89 2 2209 108 11 0 chr9 42554464 42554750 -75307877 - AluSq SINE Alu -23 290 2 25 31 0 0 chr9 42554876 42554908 -75307719 + AT_rich Low_complexity Low_complexity 1 32 0 2551 51 14 0 chr9 42555057 42555352 -75307275 + AluY SINE Alu 1 299 -12 746 187 136 51 chr9 42555361 42555546 -75307081 + L1ME2 LINE L1 5608 5822 -342 2133 97 10 7 chr9 42555546 42555836 -75306791 - AluSx SINE Alu -21 291 1 746 187 136 51 chr9 42555836 42555907 -75306720 + L1ME2 LINE L1 5822 5886 -278 413 198 0 153 chr9 42556187 42556243 -75306384 + MER58B DNA MER1_type 208 271 -2149 2565 157 39 35 chr9 42556243 42556728 -75305899 - LTR45B LTR ERV1 0 489 3 413 198 0 153 chr9 42556728 42556780 -75305847 + MER58B DNA MER1_type 271 287 -2133 2734 170 85 2 chr9 42556780 42557287 -75305340 - MER44D DNA MER2_type 0 605 2 413 198 0 153 chr9 42557287 42557334 -75305293 + MER58B DNA MER1_type 287 340 -1 293 148 0 19 chr9 42557722 42557776 -75304851 + L1ME LINE L1 5770 5822 -299 2425 88 0 0 chr9 42557784 42558080 -75304547 + AluY SINE Alu 1 296 -15 6239 152 26 7 chr9 42558191 42559304 -75303323 + L1P LINE L1 4195 5328 -818 233 248 98 53 chr9 42559644 42559777 -75302850 - L1MEd LINE L1 -5979 140 2 2441 82 3 0 chr9 42560640 42560946 -75301681 - AluY SINE Alu -4 307 1 23 68 0 0 chr9 42561050 42561094 -75301533 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr9 42561284 42561314 -75301313 + AT_rich Low_complexity Low_complexity 1 30 0 1380 233 50 1 chr9 42562365 42562833 -75299794 + MER89 LTR ERV1 3 555 -4 2192 127 0 13 chr9 42562838 42563153 -75299474 - AluSx SINE Alu -1 311 1 4068 265 63 70 chr9 42563166 42564836 -75297791 + MER89-int LTR ERV1 2 1660 -5141 591 296 133 5 chr9 42565280 42565483 -75297144 - MIR SINE MIR -30 232 4 252 395 31 8 chr9 42566027 42566156 -75296471 + MIR3 SINE MIR 44 175 -33 2296 62 22 0 chr9 42566164 42566465 -75296162 + AluY SINE Alu 2 308 0 313 188 14 0 chr9 42566687 42566756 -75295871 + Alu SINE Alu 227 296 -5 2363 67 0 17 chr9 42566779 42567076 -75295551 + AluY SINE Alu 1 292 -19 2470 58 0 16 chr9 42567361 42567669 -75294958 - AluY SINE Alu -8 303 1 614 291 133 5 chr9 42567858 42568061 -75294566 - MIR SINE MIR -30 232 4 253 388 39 8 chr9 42568605 42568734 -75293893 + MIR3 SINE MIR 43 175 -33 2265 76 22 0 chr9 42568742 42569043 -75293584 + AluY SINE Alu 2 308 0 545 294 43 47 chr9 42569247 42569515 -75293112 - MLT1G LTR MaLR -170 425 144 1059 241 121 69 chr9 42570663 42571256 -75291371 + MLT1E3 LTR MaLR 1 624 0 1966 128 0 42 chr9 42572158 42572291 -75290336 + AluSx SINE Alu 3 140 -172 2401 80 0 10 chr9 42572291 42572602 -75290025 + AluY SINE Alu 1 308 -3 1966 128 0 42 chr9 42572602 42572774 -75289853 + AluSx SINE Alu 140 295 -17 2031 120 0 3 chr9 42573588 42573897 -75288730 - AluSx SINE Alu 0 308 1 26 0 0 0 chr9 42574485 42574511 -75288116 + AT_rich Low_complexity Low_complexity 1 26 0 301 308 25 66 chr9 42574711 42574997 -75287630 + L1MC4a LINE L1 5636 5909 -1899 302 280 152 24 chr9 42575189 42575314 -75287313 - MIR SINE MIR -121 141 1 2059 100 0 24 chr9 42575382 42575671 -75286956 + AluY SINE Alu 1 282 -29 287 335 124 54 chr9 42576012 42576116 -75286511 + L2 LINE L2 2242 2337 -977 1749 99 39 46 chr9 42576116 42576398 -75286229 - AluSx SINE Alu -15 297 18 287 335 124 54 chr9 42576398 42576738 -75285889 + L2 LINE L2 2337 2717 -597 2527 62 0 3 chr9 42577464 42577773 -75284854 - AluY SINE Alu -3 308 1 431 311 161 31 chr9 42577825 42578111 -75284516 + L2 LINE L2 2912 3234 -38 589 155 146 0 chr9 42578950 42579053 -75283574 + THE1B LTR MaLR 21 138 -226 1621 203 90 123 chr9 42580544 42581081 -75281546 + MLT1E2 LTR MaLR 1 517 -109 2414 102 0 0 chr9 42581081 42581394 -75281233 - AluSq SINE Alu 0 313 1 1621 203 90 123 chr9 42581394 42581501 -75281126 + MLT1E2 LTR MaLR 517 626 0 449 209 75 67 chr9 42581580 42581714 -75280913 + MLT1E1 LTR MaLR 520 654 0 1346 151 70 126 chr9 42581877 42582046 -75280581 + THE1C LTR MaLR 1 178 -197 1600 92 9 5 chr9 42582046 42582263 -75280364 + L1PA8 LINE L1 5950 6167 -5 1346 151 70 126 chr9 42582263 42582490 -75280137 + THE1C LTR MaLR 178 375 0 3002 64 0 3 chr9 42582490 42582866 -75279761 + THE1C-int LTR MaLR 1 375 -1205 24 53 0 0 chr9 42583179 42583217 -75279410 + AT_rich Low_complexity Low_complexity 1 38 0 2274 88 0 7 chr9 42585443 42585780 -75276847 + AluSq SINE Alu 1 313 0 235 298 43 62 chr9 42585999 42586160 -75276467 + L1 LINE L1 3544 3701 -2445 2522 32 0 0 chr9 42586272 42586603 -75276024 - AluY SINE Alu 0 331 1 1682 168 77 12 chr9 42586754 42587347 -75275280 - MER39 LTR ERV1 -1 706 1 257 0 30 0 chr9 42588445 42588478 -75274149 + (TG)n Simple_repeat Simple_repeat 1 34 0 264 77 0 0 chr9 42588478 42588517 -75274110 + (GA)n Simple_repeat Simple_repeat 2 40 0 4324 166 61 24 chr9 42589350 42590312 -75272315 - L1MB1 LINE L1 -5 6163 5160 1438 179 8 19 chr9 42590585 42590842 -75271785 + L1PA16 LINE L1 5904 6157 -9 189 319 14 14 chr9 42591790 42591862 -75270765 + L2 LINE L2 3193 3264 -8 206 200 60 40 chr9 42592063 42592113 -75270514 - L2 LINE L2 -518 2796 2746 2508 83 0 3 chr9 42592538 42592850 -75269777 - AluY SINE Alu 0 311 1 1075 205 10 0 chr9 42592963 42593158 -75269469 + MER92C LTR ERV1 188 384 -170 266 239 0 15 chr9 42593214 42593281 -75269346 + MER92C LTR ERV1 487 552 -2 261 267 60 64 chr9 42593470 42593622 -75269005 + MIR3 SINE MIR 3 172 -36 782 248 56 56 chr9 42593999 42594269 -75268358 + MER67C LTR ERV1 1 270 -440 3268 132 14 51 chr9 42594276 42594395 -75268232 + MER4B LTR ERV1 1 123 -487 2393 133 15 3 chr9 42594395 42594734 -75267893 + MER61A LTR ERV1 1 343 0 3268 132 14 51 chr9 42594734 42595207 -75267420 + MER4B LTR ERV1 123 571 -39 1958 187 62 17 chr9 42595243 42595661 -75266966 + MER67C LTR ERV1 274 710 0 706 240 77 5 chr9 42595693 42595889 -75266738 - MER58C DNA MER1_type -1 214 5 357 197 0 0 chr9 42596090 42596151 -75266476 + MER82 DNA MER2_type 1 61 -592 2491 168 68 50 chr9 42596152 42596711 -75265916 - LTR48 LTR ERV1 0 787 219 2405 69 0 10 chr9 42596711 42597014 -75265613 + AluY SINE Alu 1 300 -11 2360 107 0 7 chr9 42597016 42597326 -75265301 + AluSg SINE Alu 1 308 -2 732 204 23 136 chr9 42597382 42597501 -75265126 - LTR48 LTR ERV1 -552 235 161 2208 149 27 43 chr9 42597501 42597871 -75264756 + THE1B LTR MaLR 1 364 0 732 204 23 136 chr9 42597871 42598016 -75264611 - LTR48 LTR ERV1 -626 161 1 * 2418 236 47 11 chr9 42598016 42598566 -75264061 + MER82 DNA MER2_type 59 628 -25 286 237 0 0 chr9 42598566 42598625 -75264002 + MER82 DNA MER2_type 593 651 -2 2151 122 7 0 chr9 42599106 42599402 -75263225 - AluSq SINE Alu -15 298 1 31 44 0 0 chr9 42599846 42599891 -75262736 + AT_rich Low_complexity Low_complexity 1 45 0 30 69 0 0 chr9 42600446 42600504 -75262123 + AT_rich Low_complexity Low_complexity 1 58 0 906 242 126 53 chr9 42600531 42600927 -75261700 + MLT2B1 LTR ERVL 20 444 -76 1625 154 51 73 chr9 42600937 42601255 -75261372 + MER47A DNA MER2_type 2 312 -2011 4439 79 5 16 chr9 42601255 42601639 -75260988 + MER41A LTR ERV1 1 379 -175 2246 110 0 0 chr9 42601639 42601938 -75260689 + AluSg SINE Alu 1 299 -11 4439 79 5 16 chr9 42601938 42602113 -75260514 + MER41A LTR ERV1 379 554 0 1625 154 51 73 chr9 42602113 42602165 -75260462 + MER47A DNA MER2_type 312 364 -2 315 49 0 0 chr9 42602165 42602206 -75260421 + (TG)n Simple_repeat Simple_repeat 2 42 0 1363 200 54 11 chr9 42602600 42602880 -75259747 + AluJb SINE Alu 1 292 -20 2237 98 0 16 chr9 42603020 42603336 -75259291 - AluSx SINE Alu -1 311 1 341 345 85 20 chr9 42604077 42604277 -75258350 - MIR SINE MIR -37 225 13 799 171 16 0 chr9 42604432 42604561 -75258066 + FLAM_C SINE Alu 1 131 -2 24 32 0 0 chr9 42604811 42604842 -75257785 + AT_rich Low_complexity Low_complexity 1 31 0 463 221 29 43 chr9 42605167 42605307 -75257320 - MIR SINE MIR 0 262 125 1490 195 28 83 chr9 42605331 42605713 -75256914 - MLT1B LTR MaLR 0 390 47 2147 134 0 6 chr9 42605713 42606027 -75256600 + AluSx SINE Alu 1 312 0 1490 195 28 83 chr9 42606027 42606072 -75256555 - MLT1B LTR MaLR -343 47 1 246 62 0 0 chr9 42607375 42607407 -75255220 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 236 0 0 chr9 42607678 42607733 -75254894 + MIR3 SINE MIR 108 162 -46 189 0 0 0 chr9 42608891 42608912 -75253715 + (CA)n Simple_repeat Simple_repeat 1 21 0 2287 131 51 22 chr9 42610588 42611032 -75251595 - LTR56 LTR ERV1 0 437 10 2493 33 3 13 chr9 42611397 42611698 -75250929 + AluY SINE Alu 1 298 -13 1966 126 23 23 chr9 42611999 42612301 -75250326 + AluSq SINE Alu 1 302 -11 2230 153 26 48 chr9 42612915 42613226 -75249401 - MER39 LTR ERV1 -2 705 406 4443 132 18 40 chr9 42613226 42613932 -75248695 - LTR8 LTR ERV1 0 691 1 2230 153 26 48 chr9 42613932 42614076 -75248551 - MER39 LTR ERV1 -301 406 260 535 213 94 8 chr9 42614048 42614175 -75248452 - MER39 LTR ERV1 -569 138 1 * 1981 159 3 0 chr9 42614387 42614695 -75247932 + AluSx SINE Alu 1 309 -3 1340 98 5 5 chr9 42614772 42614965 -75247662 - AluY SINE Alu -7 304 112 2233 137 50 17 chr9 42615486 42615908 -75246719 - LTR56 LTR ERV1 0 445 10 2491 43 3 13 chr9 42616273 42616577 -75246050 + AluY SINE Alu 1 301 -10 2130 115 0 32 chr9 42616880 42617192 -75245435 + AluSq SINE Alu 1 302 -11 198 0 0 0 chr9 42617510 42617532 -75245095 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr9 42617635 42617657 -75244970 + AT_rich Low_complexity Low_complexity 1 22 0 2329 62 0 10 chr9 42617727 42618044 -75244583 + AluY SINE Alu 1 311 0 1841 157 17 0 chr9 42619111 42619404 -75243223 - AluSx SINE Alu -14 298 1 2031 131 10 0 chr9 42619963 42620288 -75242339 + AluSx SINE Alu 1 312 0 2332 59 0 16 chr9 42621675 42621982 -75240645 - AluY SINE Alu -9 302 1 371 223 34 126 chr9 42622486 42622724 -75239903 - L2 LINE L2 0 3313 3098 2268 115 0 0 chr9 42622897 42623202 -75239425 + AluSx SINE Alu 1 305 -7 29 78 0 0 chr9 42623379 42623443 -75239184 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr9 42623914 42623935 -75238692 + AT_rich Low_complexity Low_complexity 1 21 0 2155 123 7 0 chr9 42624214 42624514 -75238113 - AluSx SINE Alu -10 302 1 201 224 112 41 chr9 42624850 42624948 -75237679 - L2 LINE L2 -1582 1732 1628 192 311 27 40 chr9 42625915 42625989 -75236638 - MER5A DNA MER1_type 0 189 117 1565 74 69 0 chr9 42626064 42626266 -75236361 - AluSq SINE Alu -97 216 1 265 264 0 0 chr9 42626403 42626456 -75236171 - MLT1H1 LTR MaLR -361 194 142 21 36 0 0 chr9 42626730 42626758 -75235869 + AT_rich Low_complexity Low_complexity 1 28 0 1201 216 179 76 chr9 42627605 42628198 -75234429 + MLT1E1 LTR MaLR 1 654 0 2020 125 0 39 chr9 42629095 42629228 -75233399 + AluSx SINE Alu 3 140 -172 2423 75 0 10 chr9 42629228 42629536 -75233091 + AluY SINE Alu 1 305 -6 2020 125 0 39 chr9 42629536 42629707 -75232920 + AluSx SINE Alu 140 295 -17 2061 117 0 3 chr9 42630521 42630830 -75231797 - AluSx SINE Alu 0 308 1 26 0 0 0 chr9 42631418 42631444 -75231183 + AT_rich Low_complexity Low_complexity 1 26 0 316 304 25 66 chr9 42631645 42631931 -75230696 + L1MC4a LINE L1 5636 5909 -1899 359 248 152 24 chr9 42632122 42632247 -75230380 - MIR SINE MIR -121 141 1 1999 109 0 41 chr9 42632315 42632609 -75230018 + AluY SINE Alu 1 282 -29 266 345 108 62 chr9 42632953 42633052 -75229575 + L2 LINE L2 2242 2335 -979 219 69 0 0 chr9 42633052 42633081 -75229546 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 1697 84 4 65 chr9 42633089 42633351 -75229276 - AluSx SINE Alu -49 263 18 266 345 108 62 chr9 42633351 42633697 -75228930 + L2 LINE L2 2341 2717 -597 301 316 176 34 chr9 42634401 42634423 -75228204 + L2 LINE L2 2827 2844 -428 2633 48 0 3 chr9 42634423 42634735 -75227892 - AluY SINE Alu 0 311 1 301 316 176 34 chr9 42634735 42635069 -75227558 + L2 LINE L2 2844 3234 -38 616 155 140 17 chr9 42635879 42636011 -75226616 + THE1B LTR MaLR 7 138 -226 2834 0 0 10 chr9 42636228 42636535 -75226092 - AluYa5 SINE Alu -7 304 1 22 0 0 0 chr9 42636733 42636755 -75225872 + AT_rich Low_complexity Low_complexity 1 22 0 2282 60 10 3 chr9 42636903 42637201 -75225426 + AluY SINE Alu 1 300 -11 1532 194 101 100 chr9 42638121 42638669 -75223958 + MLT1E2 LTR MaLR 1 521 -105 2475 96 0 0 chr9 42638669 42638981 -75223646 - AluSq SINE Alu -1 312 1 1532 194 101 100 chr9 42638981 42639088 -75223539 + MLT1E2 LTR MaLR 521 626 0 462 209 75 67 chr9 42639167 42639301 -75223326 + MLT1E1 LTR MaLR 520 654 0 2005 101 49 111 chr9 42639464 42639633 -75222994 + THE1B LTR MaLR 1 179 -185 1525 92 10 10 chr9 42639633 42639865 -75222762 + L1PA8 LINE L1 5950 6181 0 2005 101 49 111 chr9 42639865 42640082 -75222545 + THE1B LTR MaLR 179 364 0 3026 64 0 0 chr9 42640082 42640457 -75222170 + THE1B-int LTR MaLR 1 375 -1205 22 0 0 0 chr9 42640772 42640794 -75221833 + AT_rich Low_complexity Low_complexity 1 22 0 2189 109 6 3 chr9 42643035 42643373 -75219254 + AluSq SINE Alu 1 313 0 410 321 90 58 chr9 42643383 42643794 -75218833 + L1M4 LINE L1 3324 3747 -2399 1689 163 77 12 chr9 42644007 42644600 -75218027 - MER39 LTR ERV1 -1 706 1 288 0 0 0 chr9 42645700 42645732 -75216895 + (TG)n Simple_repeat Simple_repeat 1 32 0 * 291 28 0 0 chr9 42645731 42645767 -75216860 + (GA)n Simple_repeat Simple_repeat 1 36 0 4310 166 61 15 chr9 42646599 42647559 -75215068 - L1MB1 LINE L1 -5 6163 5160 1470 164 8 20 chr9 42647832 42648082 -75214545 + L1PA16 LINE L1 5904 6150 -16 215 315 90 0 chr9 42649018 42649107 -75213520 + L2 LINE L2 3209 3305 -8 185 220 60 40 chr9 42649308 42649358 -75213269 - L2 LINE L2 -518 2796 2746 2545 72 0 3 chr9 42649798 42650104 -75212523 - AluY SINE Alu -6 305 1 1018 215 10 0 chr9 42650217 42650412 -75212215 + MER92C LTR ERV1 188 384 -170 297 197 13 40 chr9 42650459 42650535 -75212092 + MER92C LTR ERV1 479 552 -2 277 255 64 64 chr9 42650724 42650876 -75211751 + MIR3 SINE MIR 3 172 -36 765 252 56 56 chr9 42651253 42651523 -75211104 + MER67C LTR ERV1 1 270 -440 3242 136 12 50 chr9 42651530 42651649 -75210978 + MER4B LTR ERV1 1 123 -487 2376 135 15 6 chr9 42651649 42651989 -75210638 + MER61A LTR ERV1 1 343 0 3242 136 12 50 chr9 42651989 42652463 -75210164 + MER4B LTR ERV1 123 571 -39 1911 194 62 17 chr9 42652499 42652917 -75209710 + MER67C LTR ERV1 274 710 0 687 237 88 10 chr9 42652960 42653154 -75209473 - MER58C DNA MER1_type -1 214 6 357 197 0 0 chr9 42653355 42653416 -75209211 + MER82 DNA MER2_type 1 61 -592 2545 161 68 50 chr9 42653417 42653976 -75208651 - LTR48 LTR ERV1 0 787 219 2412 69 0 10 chr9 42653976 42654282 -75208345 + AluY SINE Alu 1 303 -8 2402 97 0 7 chr9 42654284 42654594 -75208033 + AluSg SINE Alu 1 308 -2 207 0 0 0 chr9 42654633 42654656 -75207971 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 707 208 19 138 chr9 42654659 42654773 -75207854 - LTR48 LTR ERV1 -558 229 162 2207 149 27 43 chr9 42654773 42655143 -75207484 + THE1B LTR MaLR 1 364 0 707 208 19 138 chr9 42655143 42655288 -75207339 - LTR48 LTR ERV1 -625 162 1 * 2525 236 48 2 chr9 42655288 42655833 -75206794 + MER82 DNA MER2_type 59 628 -25 307 220 0 0 chr9 42655833 42655892 -75206735 + MER82 DNA MER2_type 593 651 -2 2215 117 0 3 chr9 42656373 42656672 -75205955 - AluSq SINE Alu -15 298 1 936 262 124 17 chr9 42656676 42656697 -75205930 - MER110A LTR ERV1 -12 456 439 1812 202 54 42 chr9 42656697 42657196 -75205431 + MLT1D LTR MaLR 1 505 0 936 262 124 17 chr9 42657196 42657586 -75205041 - MER110A LTR ERV1 -29 439 1 339 175 0 0 chr9 42658676 42658733 -75203894 + MER57-int LTR ERV1 7249 7305 -232 943 196 75 8 chr9 42658750 42659015 -75203612 + LTR54B LTR ERV1 212 494 -4 1639 176 66 0 chr9 42659030 42659319 -75203308 + AluJb SINE Alu 1 308 -4 2493 164 24 19 chr9 42659596 42660022 -75202605 + MSTB1 LTR MaLR 5 432 0 315 237 144 50 chr9 42660205 42660344 -75202283 + Charlie8 DNA MER1_type 30 181 -2236 2463 65 0 3 chr9 42661661 42661968 -75200659 - AluY SINE Alu -5 306 1 373 296 84 0 chr9 42662408 42662550 -75200077 + MLT1I LTR MaLR 13 166 -243 24 32 0 0 chr9 42662818 42662849 -75199778 + AT_rich Low_complexity Low_complexity 1 31 0 2457 67 6 13 chr9 42663329 42663642 -75198985 - AluY SINE Alu 0 311 1 458 277 18 57 chr9 42663643 42663925 -75198702 - L1ME3 LINE L1 -214 5948 5678 2480 66 3 0 chr9 42664216 42664519 -75198108 + AluY SINE Alu 1 304 -7 2564 49 3 3 chr9 42664992 42665299 -75197328 + AluY SINE Alu 1 307 -4 207 0 0 0 chr9 42665299 42665322 -75197305 + (TA)n Simple_repeat Simple_repeat 2 24 0 2311 190 27 5 chr9 42665322 42665509 -75197118 + MSTB LTR MaLR 8 189 -237 1774 149 3 3 chr9 42665509 42665791 -75196836 + AluSx SINE Alu 1 282 -30 807 134 0 0 chr9 42665679 42665791 -75196836 + AluSg/x SINE Alu 171 322 0 361 0 0 0 chr9 42665791 42665831 -75196796 + (TAAA)n Simple_repeat Simple_repeat 2 168 0 2311 190 27 5 chr9 42665831 42666052 -75196575 + MSTB LTR MaLR 188 426 0 1872 117 0 0 chr9 42666079 42666328 -75196299 + AluSx SINE Alu 44 292 -20 659 203 38 0 chr9 42666541 42666699 -75195928 - MER96B DNA MER1_type? -13 404 241 231 263 38 25 chr9 42667038 42667118 -75195509 + MER94 DNA DNA 1 81 -53 896 96 0 0 chr9 42667243 42667397 -75195230 + AluY SINE Alu 175 311 0 2203 100 7 0 chr9 42667568 42667859 -75194768 - AluSq SINE Alu -20 293 1 1412 234 117 60 chr9 42668396 42668536 -75194091 + MER89-int LTR ERV1 1922 2053 -4748 1910 152 9 25 chr9 42668536 42668852 -75193775 - AluSx SINE Alu -1 311 1 1412 234 117 60 chr9 42668852 42669083 -75193544 + MER89-int LTR ERV1 2053 2269 -4532 1755 155 3 67 chr9 42669083 42669399 -75193228 + AluSx SINE Alu 1 296 -16 1412 234 117 60 chr9 42669399 42669608 -75193019 + MER89-int LTR ERV1 2269 2536 -4265 4973 233 57 62 chr9 42669839 42671249 -75191378 + MER89-int LTR ERV1 354 3897 -2904 2196 83 0 23 chr9 42671399 42671699 -75190928 - AluY SINE Alu -18 293 1 2177 192 55 59 chr9 42671798 42672308 -75190319 + MER89-int LTR ERV1 6052 6559 -242 1082 222 66 82 chr9 42672308 42672935 -75189692 + MER52A LTR ERV1 711 1470 -285 513 274 13 13 chr9 42672943 42673096 -75189531 + MER52A LTR ERV1 1603 1755 0 1651 148 45 39 chr9 42673285 42673696 -75188931 - LTR12 LTR ERV1 -234 480 1 704 221 27 0 chr9 42673697 42673846 -75188781 + MER89-int LTR ERV1 6649 6801 0 1338 183 26 57 chr9 42673910 42674255 -75188372 + MER89 LTR ERV1 165 559 0 2733 159 29 23 chr9 42674893 42675377 -75187250 + LTR22B LTR ERVK 1 487 -5 2254 132 0 54 chr9 42675565 42675935 -75186692 - L1PB4 LINE L1 -13 6143 5794 380 348 14 0 chr9 42676101 42676239 -75186388 - L2 LINE L2 -454 2860 2721 22 70 0 0 chr9 42676914 42676957 -75185670 + AT_rich Low_complexity Low_complexity 1 43 0 317 259 12 12 chr9 42677820 42677905 -75184722 - MER5A DNA MER1_type -102 87 3 1934 73 15 27 chr9 42679013 42679273 -75183354 + AluSx SINE Alu 52 308 -4 186 43 0 0 chr9 42679273 42679296 -75183331 + (TA)n Simple_repeat Simple_repeat 1 23 0 1464 161 62 26 chr9 42679319 42679624 -75183003 + THE1C LTR MaLR 1 316 -59 394 162 0 0 chr9 42681255 42681323 -75181304 + THE1C LTR MaLR 361 428 0 2813 13 0 3 chr9 42681632 42681941 -75180686 - AluYb8 SINE Alu -10 308 1 2480 69 0 3 chr9 42681966 42682272 -75180355 - AluY SINE Alu -6 305 1 367 256 37 61 chr9 42682352 42682516 -75180111 + MIR SINE MIR 98 257 -5 32 57 0 0 chr9 42682588 42682641 -75179986 + AT_rich Low_complexity Low_complexity 1 53 0 396 267 14 48 chr9 42682701 42682769 -75179858 - L1M4 LINE L1 -1141 5005 4936 1603 183 15 154 chr9 42682769 42683045 -75179582 - MLT2D LTR ERVL 0 414 232 2336 67 11 0 chr9 42683045 42683329 -75179298 - AluY SINE Alu -24 287 1 1603 183 15 154 chr9 42683329 42683533 -75179094 - MLT2D LTR ERVL -182 232 1 396 267 14 48 chr9 42683533 42683610 -75179017 - L1M4 LINE L1 -1210 4936 4865 406 244 37 69 chr9 42683768 42683985 -75178642 + L1M4 LINE L1 4981 5190 -956 * 2501 196 24 4 chr9 42683982 42684478 -75178149 - L1 LINE L1 -981 5165 4660 278 253 63 0 chr9 42684480 42684575 -75178052 + L1M4 LINE L1 3044 3144 -3002 923 250 91 18 chr9 42684580 42684920 -75177707 + L1M4 LINE L1 4309 4673 -1473 1824 122 17 7 chr9 42684922 42685217 -75177410 + L1MA9 LINE L1 5956 6253 -59 2817 3 0 0 chr9 42685541 42685841 -75176786 - AluYa5 SINE Alu -11 300 1 542 338 31 18 chr9 42686019 42686244 -75176383 - L2 LINE L2 -243 3070 2843 868 265 67 30 chr9 42686458 42686756 -75175871 + MLT1H LTR MaLR 4 312 -237 917 291 298 39 chr9 42686874 42687670 -75174957 - L2 LINE L2 -854 2460 1459 845 214 108 54 chr9 42687670 42687873 -75174754 - MLT1A1 LTR MaLR 0 396 205 1601 206 140 9 chr9 42687873 42688223 -75174404 + MSTD LTR MaLR 1 396 0 845 214 108 54 chr9 42688223 42688357 -75174270 - MLT1A1 LTR MaLR -191 205 1 8261 205 38 46 chr9 42688357 42690105 -75172522 - MLT1A1-int LTR MaLR 0 1735 2 1130 202 113 64 chr9 42690107 42690174 -75172453 - MLT1A1 LTR MaLR -1 364 302 2137 126 7 0 chr9 42690174 42690475 -75172152 + AluSq SINE Alu 1 303 -10 1130 202 113 64 chr9 42690475 42690753 -75171874 - MLT1A1 LTR MaLR -63 302 2 590 304 82 0 chr9 42690762 42690956 -75171671 - L2 LINE L2 -1859 1455 1246 304 346 10 0 chr9 42690972 42691076 -75171551 - MIR SINE MIR -61 147 43 358 206 0 0 chr9 42691835 42691903 -75170724 - MER105 DNA DNA 0 204 137 2624 53 0 0 chr9 42693548 42693851 -75168776 + AluY SINE Alu 1 303 -8 311 313 54 7 chr9 42694697 42694844 -75167783 + MIR SINE MIR 39 192 -70 2909 9 0 9 chr9 42694969 42695290 -75167337 - AluYb8 SINE Alu 0 318 1 595 208 195 0 chr9 42696090 42696244 -75166383 + MIR SINE MIR 36 219 -43 2091 144 64 25 chr9 42696756 42697294 -75165333 + MLT2A2 LTR ERVL 4 554 0 2040 125 0 7 chr9 42697519 42697833 -75164794 + AluSg SINE Alu 1 312 0 2628 49 0 0 chr9 42698150 42698457 -75164170 + AluY SINE Alu 1 307 -4 358 234 21 0 chr9 42698812 42698906 -75163721 + MIR SINE MIR 75 170 -92 23 33 0 0 chr9 42699074 42699104 -75163523 + AT_rich Low_complexity Low_complexity 1 30 0 2051 141 3 0 chr9 42699187 42699491 -75163136 + AluSq SINE Alu 1 305 -8 890 217 47 19 chr9 42700552 42700764 -75161863 - MLT1A2 LTR MaLR 0 374 157 5820 128 26 5 chr9 42701694 42703386 -75159241 - L1PA16 LINE L1 -16 6150 4441 1239 190 0 65 chr9 42704829 42704950 -75157677 - L1 LINE L1 -1693 4453 4326 2930 164 58 24 chr9 42704950 42705488 -75157139 - LTR38 LTR ERV1 0 556 1 1239 190 0 65 chr9 42705488 42705616 -75157011 - L1 LINE L1 -1820 4326 4225 2143 125 0 3 chr9 42705616 42705913 -75156714 + AluSx SINE Alu 1 296 -16 1239 190 0 65 chr9 42705913 42705972 -75156655 - L1 LINE L1 -1921 4225 4164 1084 53 8 8 chr9 42705993 42706124 -75156503 - AluY SINE Alu -180 131 1 1810 176 34 21 chr9 42706229 42706609 -75156018 + L1PB4 LINE L1 3544 3928 -2218 326 186 17 0 chr9 42706605 42706664 -75155963 + L1PB4 LINE L1 4894 4953 -1193 * 258 231 0 0 chr9 42706671 42706723 -75155904 + LTR30 LTR ERV1 1 52 -670 2038 166 86 10 chr9 42706747 42707153 -75155474 + LTR12 LTR ERV1 55 480 -234 4350 159 51 42 chr9 42707154 42707515 -75155112 + L1PB4 LINE L1 4957 5313 -843 1621 147 25 53 chr9 42707515 42707835 -75154792 + AluSx SINE Alu 1 311 -1 4350 159 51 42 chr9 42707835 42708643 -75153984 + L1PB4 LINE L1 5313 6156 0 2069 114 0 13 chr9 42709152 42709450 -75153177 + AluSx SINE Alu 1 294 -18 200 235 88 29 chr9 42710321 42710389 -75152238 - MIR SINE MIR -145 117 46 2073 113 23 0 chr9 42710687 42710988 -75151639 - AluSg SINE Alu -2 308 1 334 294 114 20 chr9 42711052 42711253 -75151374 + L1MC4a LINE L1 5694 5913 -1895 444 267 50 77 chr9 42711486 42711543 -75151084 + MER77 LTR ERV1 234 291 -314 1558 109 0 5 chr9 42711543 42711763 -75150864 - AluSq SINE Alu -12 301 83 444 267 50 77 chr9 42711763 42712041 -75150586 + MER77 LTR ERV1 291 598 -7 2409 70 3 0 chr9 42713232 42713530 -75149097 + AluY SINE Alu 1 299 -12 2365 65 0 36 chr9 42713552 42713859 -75148768 + AluY SINE Alu 1 296 -15 251 118 0 0 chr9 42714104 42714138 -75148489 - Alu SINE Alu -266 34 1 2288 107 3 0 chr9 42714188 42714496 -75148131 + AluSg SINE Alu 1 309 -1 1196 214 64 10 chr9 42714801 42715114 -75147513 - L1ME1 LINE L1 -15 6151 5822 21 0 0 0 chr9 42715294 42715315 -75147312 + AT_rich Low_complexity Low_complexity 1 21 0 258 221 287 16 chr9 42716005 42716127 -75146500 + MER5A DNA MER1_type 35 189 0 3383 131 39 0 chr9 42716769 42717302 -75145325 + MER41C LTR ERV1 1 554 0 1630 16 0 0 chr9 42717689 42717873 -75144754 - AluYb8 SINE Alu -2 316 133 2310 63 0 66 chr9 42717898 42718217 -75144410 - AluY SINE Alu -13 298 1 1071 245 71 58 chr9 42719458 42719854 -75142773 + MLT2B1 LTR ERVL 120 520 0 2543 231 71 11 chr9 42719877 42721041 -75141586 + ERVL-B1 LTR ERVL 4 1262 -4502 2157 158 13 10 chr9 42721042 42721440 -75141187 - Tigger5 DNA MER2_type -1 2322 1924 1232 120 48 10 chr9 42721440 42721648 -75140979 + L1PB1 LINE L1 5936 6151 0 1035 162 91 50 chr9 42721676 42721917 -75140710 - MER47B DNA MER2_type -167 251 1 1673 238 61 7 chr9 42721917 42722341 -75140286 + ERVL-B1 LTR ERVL 1261 1707 -4057 2244 137 71 2 chr9 42722345 42722740 -75139887 - MSTA LTR MaLR -6 422 1 5055 196 38 11 chr9 42722740 42723777 -75138850 + ERVL-B1 LTR ERVL 1701 2765 -2999 621 61 12 0 chr9 42723877 42723959 -75138668 - AluY SINE Alu -227 83 1 5118 215 7 21 chr9 42723961 42725313 -75137314 - L1 LINE L1 -1972 4174 2841 1181 293 28 30 chr9 42725555 42726026 -75136601 - L1PA13 LINE L1 -6317 470 1 9007 215 72 35 chr9 42726146 42726670 -75135957 + L1MB2 LINE L1 1297 1800 -4607 2124 103 0 48 chr9 42726670 42726980 -75135647 + AluY SINE Alu 1 295 -16 9007 215 72 35 chr9 42726980 42729411 -75133216 + L1MB2 LINE L1 1800 4139 -2268 369 0 0 0 chr9 42729411 42729452 -75133175 + (CA)n Simple_repeat Simple_repeat 2 42 0 9007 215 72 35 chr9 42729452 42730203 -75132424 + L1MB2 LINE L1 4139 4860 -1547 1507 140 70 28 chr9 42730203 42730488 -75132139 + AluJo SINE Alu 1 297 -15 9007 215 72 35 chr9 42730488 42730859 -75131768 + L1MB2 LINE L1 4860 5216 -1191 189 0 0 0 chr9 42730859 42730880 -75131747 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 9007 215 72 35 chr9 42730880 42731710 -75130917 + L1MB2 LINE L1 5216 6398 -9 800 168 24 0 chr9 42731709 42731876 -75130751 + L1MB8 LINE L1 5814 5984 -194 * 355 156 0 16 chr9 42731912 42731970 -75130657 - AluSg SINE Alu 0 302 245 1698 78 0 0 chr9 42731970 42732175 -75130452 - AluSg SINE Alu -105 205 1 602 200 7 7 chr9 42732181 42732321 -75130306 + L1MB8 LINE L1 6031 6170 -8 876 334 63 19 chr9 42732583 42733008 -75129619 + L2 LINE L2 2866 3309 -4 2264 52 42 7 chr9 42733051 42733337 -75129290 - AluY SINE Alu -13 298 3 208 333 125 10 chr9 42733379 42733475 -75129152 - L2 LINE L2 -21 3251 3145 2052 120 0 3 chr9 42733669 42733953 -75128674 + AluSq SINE Alu 1 283 -30 214 331 69 47 chr9 42733977 42734470 -75128157 - L2 LINE L2 -1345 1969 1466 * 237 291 68 48 chr9 42734452 42734555 -75128072 + L2 LINE L2 3168 3272 0 251 345 93 7 chr9 42734599 42734738 -75127889 - L2 LINE L2 -1985 1329 1179 22 0 0 0 chr9 42735195 42735217 -75127410 + AT_rich Low_complexity Low_complexity 1 22 0 183 336 154 55 chr9 42735303 42735687 -75126940 - L2 LINE L2 -2743 571 150 225 229 16 49 chr9 42736034 42736095 -75126532 + MIR SINE MIR 204 262 0 2528 62 0 0 chr9 42737042 42737351 -75125276 - AluY SINE Alu -2 309 1 2159 151 49 58 chr9 42738707 42738757 -75123870 - MSTB LTR MaLR 0 426 377 2496 46 0 13 chr9 42738757 42739064 -75123563 - AluY SINE Alu -8 303 1 2159 151 49 58 chr9 42739064 42739316 -75123311 - MSTB LTR MaLR -49 377 127 2451 52 0 7 chr9 42739316 42739621 -75123006 - AluY SINE Alu -8 303 1 2159 151 49 58 chr9 42739621 42739747 -75122880 - MSTB LTR MaLR -299 127 1 1459 174 25 0 chr9 42740019 42740261 -75122366 - AluJo SINE Alu -22 290 43 352 253 11 0 chr9 42740348 42740435 -75122192 - MLT1K LTR MaLR -170 418 331 572 181 125 0 chr9 42740852 42740996 -75121631 + MER3 DNA MER1_type 15 129 -80 223 316 13 13 chr9 42742457 42742533 -75120094 + MIR SINE MIR 40 115 -147 434 314 28 8 chr9 42743259 42743427 -75119200 + MIR SINE MIR 1 170 -42 652 142 24 110 chr9 42743432 42743483 -75119144 - MER6 DNA MER2_type -1 864 810 2362 53 0 47 chr9 42743483 42743802 -75118825 + AluY SINE Alu 1 304 -7 652 142 24 110 chr9 42743802 42743962 -75118665 - MER6 DNA MER2_type -55 810 -64 245 198 279 0 chr9 42744023 42744109 -75118518 + MIR SINE MIR 21 130 -132 411 202 0 0 chr9 42744122 42744211 -75118416 + (TG)n Simple_repeat Simple_repeat 2 90 0 970 244 47 60 chr9 42744219 42744649 -75117978 - MLT2B1 LTR ERVL -40 424 1 286 285 73 32 chr9 42744656 42744779 -75117848 + MIR SINE MIR 114 241 -21 1114 314 38 75 chr9 42745549 42747012 -75115615 + L1PA12 LINE L1 56 1464 -6117 240 203 0 0 chr9 42747020 42747079 -75115548 + L1PA12 LINE L1 2022 2080 -5501 3382 182 42 4 chr9 42747084 42747783 -75114844 + L1P LINE L1 3624 4348 -1798 8601 86 4 8 chr9 42747788 42748993 -75113634 - L1P3 LINE L1 -5261 1200 1 4459 42 2 7 chr9 42749232 42749785 -75112842 - L1PA4 LINE L1 0 6155 5606 202 345 99 63 chr9 42749819 42750071 -75112556 - L2 LINE L2 -504 2810 2550 279 343 52 41 chr9 42750538 42750710 -75111917 - L2 LINE L2 -942 2372 2199 886 169 17 0 chr9 42752297 42752475 -75110152 + L1MC3 LINE L1 6858 7038 -747 269 250 21 0 chr9 42752631 42752727 -75109900 + L1 LINE L1 3905 4002 -2144 1085 213 161 2 chr9 42752728 42753131 -75109496 + L1 LINE L1 4631 5097 -1049 * 1088 198 39 47 chr9 42753122 42753544 -75109083 - L1M4 LINE L1 -3660 2722 2295 539 283 26 43 chr9 42753543 42753773 -75108854 + L1ME1 LINE L1 5907 6132 -34 * 384 175 62 72 chr9 42753787 42753884 -75108743 + MER21B LTR ERV1 1 96 -767 422 208 0 0 chr9 42753890 42753967 -75108660 + MER21B LTR ERV1 18 94 -769 * 1660 223 33 8 chr9 42753965 42754332 -75108295 + MER21B LTR ERV1 43 418 -445 1304 68 0 109 chr9 42754333 42754554 -75108073 + MER107 DNA MER1_type 1 197 0 * 2024 195 27 20 chr9 42754554 42754991 -75107636 + MER21B LTR ERV1 421 860 -3 24 0 0 0 chr9 42754998 42755022 -75107605 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr9 42755171 42755199 -75107428 + AT_rich Low_complexity Low_complexity 1 28 0 411 162 66 7 chr9 42756333 42756445 -75106182 + L1 LINE L1 5224 5347 -809 4041 152 20 0 chr9 42756445 42757128 -75105499 + L1PA16 LINE L1 5452 6151 -15 411 162 66 7 chr9 42757128 42757151 -75105476 + L1 LINE L1 5347 5367 -789 1659 155 182 19 chr9 42757644 42758012 -75104615 + MSTA LTR MaLR 1 428 0 250 291 127 0 chr9 42758058 42758137 -75104490 - L2 LINE L2 -43 3270 3182 374 314 44 6 chr9 42759933 42760092 -75102535 + MIR3 SINE MIR 33 197 -11 590 273 77 16 chr9 42761169 42761363 -75101264 - MIR SINE MIR -20 242 37 264 295 80 45 chr9 42762240 42762352 -75100275 + L2 LINE L2 3155 3270 -2 2260 24 0 0 chr9 42763800 42764052 -75098575 + AluYa8 SINE Alu 51 302 -8 632 287 275 33 chr9 42764672 42765116 -75097511 + MLT1F1 LTR MaLR 3 595 0 2805 10 0 0 chr9 42765532 42765840 -75096787 + AluYa5 SINE Alu 1 308 -3 1872 158 16 10 chr9 42765984 42766287 -75096340 - AluSx SINE Alu -7 305 1 609 206 23 0 chr9 42766760 42766891 -75095736 + MER5B DNA MER1_type 44 177 -1 753 277 44 21 chr9 42768789 42769129 -75093498 + MLT1F1 LTR MaLR 3 351 -179 434 217 61 17 chr9 42769117 42769232 -75093395 + MLT1F1 LTR MaLR 476 595 0 * 1878 162 3 10 chr9 42769782 42770084 -75092543 - AluSx SINE Alu -12 300 1 587 214 23 0 chr9 42770561 42770692 -75091935 + MER5B DNA MER1_type 44 177 -1 2280 79 3 23 chr9 42771681 42771985 -75090642 + AluSx SINE Alu 3 300 -12 10152 172 29 4 chr9 42772785 42775588 -75087039 + ERVL-B1 LTR ERVL 2823 5757 -7 1811 251 13 57 chr9 42775589 42776132 -75086495 + MLT2B1 LTR ERVL 2 520 0 2242 103 6 6 chr9 42776345 42776656 -75085971 - AluSp SINE Alu -2 311 1 219 315 14 0 chr9 42776736 42776809 -75085818 + CT-rich Low_complexity Low_complexity 1 74 0 907 256 124 25 chr9 42777196 42777598 -75085029 + LTR16A1 LTR ERVL 16 457 0 1971 141 0 32 chr9 42777829 42778141 -75084486 - AluSx SINE Alu -10 302 1 201 254 143 32 chr9 42778178 42778304 -75084323 + L2 LINE L2 3174 3313 0 1034 235 24 62 chr9 42780231 42780520 -75082107 - MER70A LTR ERVL -191 281 4 722 265 52 26 chr9 42780526 42780756 -75081871 - L2 LINE L2 -687 2627 2392 1296 7 0 0 chr9 42780860 42780996 -75081631 + AluY SINE Alu 1 136 -175 2260 76 13 3 chr9 42781159 42781462 -75081165 + AluY SINE Alu 1 306 -5 21 0 0 0 chr9 42781621 42781642 -75080985 + AT_rich Low_complexity Low_complexity 1 21 0 984 22 30 8 chr9 42781992 42782126 -75080501 + (TTATA)n Simple_repeat Simple_repeat 4 140 0 2307 68 0 14 chr9 42782126 42782411 -75080216 - AluY SINE Alu -28 283 1 314 223 64 11 chr9 42782838 42782932 -75079695 + LTR41 LTR ERVL 3 101 -672 2905 143 52 29 chr9 42783267 42783854 -75078773 - LTR49 LTR ERV1 0 549 1 396 264 119 25 chr9 42784035 42784270 -75078357 - LTR41 LTR ERVL -6 767 511 476 327 76 19 chr9 42834824 42835035 -75027592 + MIR SINE MIR 15 237 -25 608 302 34 15 chr9 42835068 42835273 -75027354 + MLT1K LTR MaLR 373 581 -7 374 367 28 17 chr9 42835284 42835461 -75027166 - MER5A DNA MER1_type -10 179 1 871 183 11 5 chr9 42835621 42835807 -75026820 - L1MA6 LINE L1 -2 6298 6112 1976 91 34 20 chr9 42836718 42837014 -75025613 - AluY SINE Alu -11 300 1 206 255 0 0 chr9 42838605 42838656 -75023971 + T-rich Low_complexity Low_complexity 1 51 0 2118 142 72 4 chr9 42839909 42840516 -75022111 - MER50 LTR ERV1 -23 711 12 372 271 21 42 chr9 42840609 42840753 -75021874 + HERVS71 LTR ERV1 4927 5067 -3911 3796 154 39 22 chr9 42840763 42841478 -75021149 - LTR8A LTR ERV1 0 727 1 29 0 0 0 chr9 42843233 42843262 -75019365 + AT_rich Low_complexity Low_complexity 1 29 0 2140 114 0 32 chr9 42843512 42843820 -75018807 - AluSx SINE Alu -14 298 1 269 322 89 0 chr9 42843850 42843940 -75018687 - MIR SINE MIR -81 127 30 273 336 49 7 chr9 42844416 42844559 -75018068 - MIR SINE MIR -92 170 22 252 260 48 68 chr9 42845398 42845544 -75017083 - MIR SINE MIR -78 184 42 198 297 14 54 chr9 42845699 42845773 -75016854 + MIR SINE MIR 175 245 -17 202 318 220 8 chr9 42846421 42846553 -75016074 - MIR SINE MIR -50 212 53 24 32 0 0 chr9 42847090 42847121 -75015506 + AT_rich Low_complexity Low_complexity 1 31 0 1995 160 0 3 chr9 42847961 42848268 -75014359 + AluSx SINE Alu 1 306 -6 2401 73 0 3 chr9 42848481 42848781 -75013846 - AluY SINE Alu -6 305 7 308 280 28 9 chr9 42849268 42849375 -75013252 + MIR3 SINE MIR 100 208 0 181 367 0 0 chr9 42850165 42850214 -75012413 + L2 LINE L2 3245 3293 -20 183 100 0 0 chr9 42851641 42851671 -75010956 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 1483 164 74 0 chr9 42851672 42851941 -75010686 - 7SLRNA srpRNA srpRNA -8 312 24 218 368 28 9 chr9 42852543 42852649 -75009978 + L2 LINE L2 2601 2708 -606 648 348 112 16 chr9 42852806 42853612 -75009015 + L2 LINE L2 2427 3313 0 362 169 28 0 chr9 42854865 42854936 -75007691 - MER116 DNA Mariner -3 77 5 729 275 86 19 chr9 42855434 42855900 -75006727 - L1MEc LINE L1 -3657 2558 2104 703 297 44 53 chr9 42856170 42856893 -75005734 - L1MEc LINE L1 -4658 1738 1022 33 46 0 15 chr9 42857779 42857817 -75004810 + AT_rich Low_complexity Low_complexity 1 39 -25 1746 158 42 3 chr9 42857817 42858102 -75004525 + AluJb SINE Alu 1 296 -16 33 46 0 15 chr9 42858102 42858128 -75004499 + AT_rich Low_complexity Low_complexity 39 64 0 204 259 0 37 chr9 42858248 42858302 -75004325 + GA-rich Low_complexity Low_complexity 5 56 0 238 176 88 29 chr9 42858451 42858519 -75004108 + L1M4 LINE L1 4519 4590 -1556 2720 206 73 30 chr9 42858552 42859288 -75003339 + L1ME1 LINE L1 5396 6163 -3 1882 141 21 7 chr9 42859321 42859612 -75003015 - AluSx SINE Alu -12 300 6 276 315 118 8 chr9 42859690 42859817 -75002810 - MER5A DNA MER1_type -6 183 43 1767 168 3 10 chr9 42860108 42860406 -75002221 + AluJo SINE Alu 1 296 -16 189 227 23 0 chr9 42860681 42860725 -75001902 + L2 LINE L2 3226 3270 -2 618 264 111 32 chr9 42861208 42861424 -75001203 - MIR SINE MIR 0 262 30 1284 180 141 0 chr9 42861873 42862128 -75000499 - AluJb SINE Alu -11 291 1 23 0 0 0 chr9 42863340 42863363 -74999264 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 42863447 42863475 -74999152 + AT_rich Low_complexity Low_complexity 1 28 0 1893 155 111 17 chr9 42863675 42863714 -74998913 - MLT2D LTR ERVL -2 412 378 369 75 0 0 chr9 42863714 42863767 -74998860 + (TG)n Simple_repeat Simple_repeat 2 54 0 1893 155 111 17 chr9 42863767 42864089 -74998538 - MLT2D LTR ERVL -36 378 17 328 333 0 0 chr9 42864981 42865083 -74997544 + MER94 DNA DNA 1 102 -32 436 224 68 41 chr9 42866534 42866681 -74995946 + MER58A DNA MER1_type 45 195 -29 2331 104 0 0 chr9 42867230 42867537 -74995090 - AluSq SINE Alu -6 307 1 2258 87 14 0 chr9 42867539 42867826 -74994801 - AluY SINE Alu -1 310 20 2109 137 16 0 chr9 42867829 42868136 -74994491 - AluSx SINE Alu 0 312 1 598 231 100 6 chr9 42870023 42870183 -74992444 - MER5B DNA MER1_type -2 176 2 415 324 112 22 chr9 42870362 42870819 -74991808 + L1M4 LINE L1 4658 5155 -991 562 159 38 8 chr9 42870896 42871028 -74991599 - LTR37B LTR ERV1 0 468 333 285 273 13 0 chr9 42871080 42871157 -74991470 + L2 LINE L2 3186 3263 -9 236 291 55 36 chr9 42872187 42872297 -74990330 + MIR SINE MIR 32 143 -119 529 178 212 42 chr9 42872981 42873072 -74989555 - LTR37A LTR ERV1 -13 413 339 2231 185 144 22 chr9 42873072 42873574 -74989053 - MER67C LTR ERV1 0 710 114 216 0 0 0 chr9 42873574 42873598 -74989029 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2231 185 144 22 chr9 42873598 42873728 -74988899 - MER67C LTR ERV1 -596 114 1 529 178 212 42 chr9 42873728 42873895 -74988732 - LTR37A LTR ERV1 -87 339 111 706 171 190 96 chr9 42874462 42874749 -74987878 - LTR37A LTR ERV1 0 426 95 2491 71 0 7 chr9 42874749 42875059 -74987568 + AluY SINE Alu 1 308 -3 706 171 190 96 chr9 42875059 42875145 -74987482 - LTR37A LTR ERV1 -331 95 18 1956 141 3 3 chr9 42875810 42876118 -74986509 - AluSx SINE Alu 0 309 2 23 33 0 0 chr9 42876141 42876171 -74986456 + AT_rich Low_complexity Low_complexity 1 30 0 883 215 127 4 chr9 42876182 42876442 -74986185 - LTR37A LTR ERV1 -57 369 78 1278 179 87 33 chr9 42877780 42878115 -74984512 + MLT1A1 LTR MaLR 11 363 -2 662 248 109 42 chr9 42878799 42879139 -74983488 + MER93b LTR ERV1 35 370 -3 2368 83 0 6 chr9 42879217 42879530 -74983097 - AluY SINE Alu 0 311 1 6872 180 16 20 chr9 42880087 42881215 -74981412 - L1PA15 LINE L1 -1 6164 5021 1520 160 82 25 chr9 42881215 42881376 -74981251 - AluJo SINE Alu -14 298 113 375 23 0 0 chr9 42881376 42881420 -74981207 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1520 160 82 25 chr9 42881420 42881539 -74981088 - AluJo SINE Alu -199 113 2 6872 180 16 20 chr9 42881539 42882625 -74980002 - L1PA15 LINE L1 -1144 5021 3933 1553 216 136 34 chr9 42882715 42883274 -74979353 + MLT1E2 LTR MaLR 11 626 0 198 0 0 0 chr9 42883341 42883363 -74979264 + (A)n Simple_repeat Simple_repeat 1 22 0 1292 117 0 44 chr9 42883431 42883636 -74978991 + AluSq SINE Alu 9 204 -109 240 143 57 0 chr9 42883645 42883715 -74978912 + (TA)n Simple_repeat Simple_repeat 2 75 0 867 191 95 19 chr9 42884023 42884233 -74978394 + MLT1B LTR MaLR 1 226 -164 934 171 14 28 chr9 42884402 42884619 -74978008 - L1MA9 LINE L1 -25 6287 6074 2277 79 0 30 chr9 42885416 42885720 -74976907 + AluY SINE Alu 1 295 -16 1490 163 47 60 chr9 42886407 42886707 -74975920 - AluJb SINE Alu -16 296 1 2041 141 10 0 chr9 42889198 42889503 -74973124 + AluSx SINE Alu 1 308 -4 2099 110 0 32 chr9 42890099 42890407 -74972220 + AluY SINE Alu 1 298 -13 23 78 0 0 chr9 42891290 42891341 -74971286 + AT_rich Low_complexity Low_complexity 1 51 0 2460 68 0 10 chr9 42891497 42891807 -74970820 - AluY SINE Alu -4 307 1 454 184 184 0 chr9 42891811 42891925 -74970702 + MER58C DNA MER1_type 81 215 0 441 268 54 0 chr9 42894133 42894245 -74968382 - MER8 DNA MER2_type -121 118 1 22 0 0 0 chr9 42894941 42894963 -74967664 + AT_rich Low_complexity Low_complexity 1 22 0 2239 114 0 0 chr9 42895558 42895855 -74966772 - AluSg SINE Alu -12 298 2 2470 68 3 7 chr9 42895888 42896198 -74966429 + AluY SINE Alu 1 309 -2 490 88 11 11 chr9 42896758 42896849 -74965778 + (GA)n Simple_repeat Simple_repeat 2 92 0 184 267 100 0 chr9 42897743 42897803 -74964824 + MIR SINE MIR 178 243 -19 1414 207 99 14 chr9 42898699 42899052 -74963575 - MLT1B LTR MaLR -4 386 4 268 119 45 0 chr9 42900151 42900218 -74962409 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 281 346 33 25 chr9 42900477 42900773 -74961854 + L2 LINE L2 2791 3090 -223 213 214 0 0 chr9 42900873 42900915 -74961712 + L2 LINE L2 3241 3282 -31 196 239 104 0 chr9 42901227 42901294 -74961333 - MIR SINE MIR -83 179 106 204 338 14 14 chr9 42901351 42901425 -74961202 - MIR SINE MIR -105 103 30 454 204 259 27 chr9 42901449 42901634 -74960993 + MIR SINE MIR 40 262 0 1348 199 10 70 chr9 42901653 42901891 -74960736 - AluJo SINE Alu -15 297 79 1723 104 0 0 chr9 42901891 42902121 -74960506 + AluSg/x SINE Alu 72 301 -9 1348 199 10 70 chr9 42902121 42902183 -74960444 - AluJo SINE Alu -233 79 15 35755 62 10 6 chr9 42902457 42903230 -74959397 + L1PA5 LINE L1 405 1174 -4980 318 23 0 0 chr9 42903230 42903274 -74959353 + L1PA2 LINE L1 6110 6153 -2 35755 62 10 6 chr9 42903274 42908224 -74954403 + L1PA5 LINE L1 1174 6148 -6 1494 192 45 24 chr9 42908412 42908745 -74953882 - MER2 DNA MER2_type -4 340 1 2285 104 13 0 chr9 42909139 42909447 -74953180 - AluSq SINE Alu -1 312 1 2778 182 10 11 chr9 42909809 42910330 -74952297 + MER44D DNA MER2_type 1 575 -30 436 134 268 0 chr9 42911255 42911367 -74951260 - L1MB1 LINE L1 -19 6170 6029 1445 181 16 23 chr9 42911374 42911678 -74950949 + L1M3 LINE L1 5484 5785 -383 26 0 0 0 chr9 42913428 42913454 -74949173 + AT_rich Low_complexity Low_complexity 1 26 0 433 165 31 16 chr9 42913549 42913676 -74948951 + CT-rich Low_complexity Low_complexity 4 132 0 295 129 0 57 chr9 42914390 42914460 -74948167 + (GGGAA)n Simple_repeat Simple_repeat 3 68 0 349 284 29 10 chr9 42915570 42915672 -74946955 - MER5B DNA MER1_type 0 178 75 1788 173 13 7 chr9 42915806 42916107 -74946520 - AluJb SINE Alu -6 306 4 655 288 29 0 chr9 42916626 42916796 -74945831 - MIR SINE MIR -74 188 14 256 159 16 16 chr9 42917079 42917142 -74945485 + GA-rich Low_complexity Low_complexity 2 64 0 3968 119 34 0 chr9 42918613 42919227 -74943400 - MER41B LTR ERV1 0 635 1 302 224 26 0 chr9 42920339 42920415 -74942212 - MER116 DNA Mariner 0 80 3 327 49 0 0 chr9 42921263 42921304 -74941323 + (TA)n Simple_repeat Simple_repeat 1 41 0 273 288 153 13 chr9 42921337 42921573 -74941054 - L1MC/D LINE L1 -1919 5889 5621 708 296 57 6 chr9 42921797 42922028 -74940599 + MIR SINE MIR 5 244 -18 316 233 22 11 chr9 42922221 42922311 -74940316 - L1MC/D LINE L1 -2312 5473 5383 2314 69 0 0 chr9 42922316 42922622 -74940005 - AluY SINE Alu 0 311 6 299 281 65 43 chr9 42922911 42923050 -74939577 - L1P LINE L1 -1101 5045 4904 2142 117 0 13 chr9 42923182 42923482 -74939145 - AluSx SINE Alu -16 296 1 14120 182 33 36 chr9 42923568 42925583 -74937044 - L1MA8 LINE L1 -2 7708 5689 1617 176 32 7 chr9 42925583 42925867 -74936760 - AluJb SINE Alu -21 291 1 14120 182 33 36 chr9 42925867 42927281 -74935346 - L1MA8 LINE L1 -2021 5689 4272 2120 116 20 0 chr9 42927281 42927582 -74935045 - AluSc SINE Alu -2 307 1 14120 182 33 36 chr9 42927582 42928017 -74934610 - L1MA8 LINE L1 -3438 4272 3837 2293 90 0 13 chr9 42928017 42928316 -74934311 - AluSg SINE Alu -15 295 1 14120 182 33 36 chr9 42928316 42929582 -74933045 - L1MA8 LINE L1 -3873 3837 2598 287 169 14 0 chr9 42929598 42929669 -74932958 + CT-rich Low_complexity Low_complexity 3 74 0 676 257 0 0 chr9 42929720 42929856 -74932771 - FRAM SINE Alu -40 136 1 782 229 83 9 chr9 42929857 42930193 -74932434 - L1M3c LINE L1 -4572 2465 2105 754 170 115 6 chr9 42930209 42930374 -74932253 - MSTD LTR MaLR -59 337 155 245 114 0 0 chr9 42930372 42930407 -74932220 - MSTD LTR MaLR -361 35 1 * 5534 143 19 6 chr9 42930428 42931899 -74930728 - L1PA16 LINE L1 -5 6161 4675 346 237 108 0 chr9 42931927 42932020 -74930607 - L1M3c LINE L1 -6922 108 6 229 263 0 0 chr9 42932096 42932153 -74930474 - L1M4 LINE L1 -1569 4577 4521 2203 90 35 7 chr9 42932394 42932684 -74929943 - AluSq SINE Alu -9 304 7 24 0 0 0 chr9 42933218 42933242 -74929385 + AT_rich Low_complexity Low_complexity 1 24 0 277 308 192 0 chr9 42933423 42933579 -74929048 - MIR SINE MIR -1 261 76 186 343 60 0 chr9 42934927 42934994 -74927633 - MIR SINE MIR -121 141 71 837 120 20 7 chr9 42935283 42935433 -74927194 - L1MB3 LINE L1 -3 6180 6029 235 180 20 0 chr9 42935711 42935761 -74926866 + (TA)n Simple_repeat Simple_repeat 2 52 0 201 74 0 0 chr9 42935785 42935812 -74926815 + (TG)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr9 42935812 42935839 -74926788 + AT_rich Low_complexity Low_complexity 1 27 0 204 324 127 0 chr9 42937255 42937401 -74925226 - L2 LINE L2 -264 3049 2885 519 291 53 93 chr9 42937587 42937962 -74924665 - L2 LINE L2 -658 2656 2297 708 268 113 26 chr9 42938767 42939077 -74923550 - MER46C DNA MER2_type 0 338 2 2157 100 25 0 chr9 42939823 42940144 -74922483 + L1MA2 LINE L1 5976 6304 0 197 274 48 0 chr9 42940802 42940864 -74921763 - L2 LINE L2 -2 3270 3206 1359 210 107 62 chr9 42940870 42941308 -74921319 - MLT1C LTR MaLR -4 463 6 871 102 0 8 chr9 42941806 42941977 -74920650 - AluSp/q SINE Alu 0 336 167 2089 130 0 34 chr9 42942117 42942440 -74920187 + AluSx SINE Alu 1 312 0 23 54 0 0 chr9 42942659 42942696 -74919931 + AT_rich Low_complexity Low_complexity 1 37 0 465 218 73 0 chr9 42943530 42943640 -74918987 + L1MA8 LINE L1 5914 6031 -260 203 136 23 23 chr9 42944540 42944584 -74918043 + (TA)n Simple_repeat Simple_repeat 1 44 0 204 336 33 33 chr9 42945170 42945292 -74917335 + L3 LINE CR1 597 718 -859 2059 119 0 0 chr9 42945596 42945911 -74916716 - AluSc SINE Alu 0 315 1 206 136 23 0 chr9 42948050 42948094 -74914533 + (CAT)n Simple_repeat Simple_repeat 2 46 0 2270 275 39 7 chr9 42948873 42949763 -74912864 + L1MEc LINE L1 2172 3051 -3164 584 214 40 0 chr9 42951242 42951368 -74911259 - L1MD2 LINE L1 -19 6340 6210 266 265 179 26 chr9 42951406 42951523 -74911104 - L1ME1 LINE L1 -90 6076 5942 * 503 206 96 14 chr9 42951521 42951667 -74910960 - L1MDa LINE L1 -6363 177 20 1015 179 17 125 chr9 42951971 42952085 -74910542 - L1ME1 LINE L1 -334 5832 5707 2105 141 36 28 chr9 42952085 42952446 -74910181 - THE1B LTR MaLR 0 364 1 1015 179 17 125 chr9 42952446 42952525 -74910102 - L1ME1 LINE L1 -459 5707 5621 1880 139 10 23 chr9 42952525 42952827 -74909800 - AluSx SINE Alu -14 298 1 1015 179 17 125 chr9 42952827 42952983 -74909644 - L1ME1 LINE L1 -545 5621 5520 1088 214 41 22 chr9 42953013 42953331 -74909296 - L1ME1 LINE L1 -1610 4536 4213 1248 284 11 11 chr9 42953349 42953708 -74908919 + LTR40c LTR ERVL 5 363 -102 297 228 87 11 chr9 42953711 42953803 -74908824 - L1ME LINE L1 -676 5490 5392 * 1093 252 143 49 chr9 42953801 42954412 -74908215 + L1ME2 LINE L1 5488 6163 -1 1183 146 0 6 chr9 42955014 42955192 -74907435 + AluSq SINE Alu 3 179 -134 251 286 43 0 chr9 42955213 42955283 -74907344 + GA-rich Low_complexity Low_complexity 6 78 0 180 0 0 0 chr9 42955284 42955304 -74907323 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 353 296 0 22 chr9 42956661 42956840 -74905787 + (TA)n Simple_repeat Simple_repeat 2 176 0 241 174 0 0 chr9 42956869 42956915 -74905712 - LTR66 LTR ERVL -171 439 394 204 40 0 0 chr9 42956952 42956977 -74905650 + (CA)n Simple_repeat Simple_repeat 2 26 0 300 253 58 0 chr9 42957065 42957152 -74905475 - L1MC4 LINE L1 -1337 6705 6614 707 120 0 0 chr9 42958100 42958208 -74904419 - L1MA2 LINE L1 0 6304 6197 207 0 0 0 chr9 42958296 42958319 -74904308 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2140 68 21 21 chr9 42959169 42959484 -74903143 + AluSg SINE Alu 2 316 0 1881 147 55 0 chr9 42959556 42959902 -74902725 - L1MB3 LINE L1 -1 6182 5818 341 229 24 0 chr9 42959914 42959997 -74902630 - L1MB3 LINE L1 -411 5772 5688 674 213 20 87 chr9 42960004 42960199 -74902428 - MIR SINE MIR -48 214 31 349 219 21 31 chr9 42960373 42960469 -74902158 + MER58C DNA MER1_type 24 118 -97 1676 204 0 7 chr9 42960478 42960786 -74901841 + AluJo SINE Alu 1 306 -6 317 214 0 12 chr9 42960793 42960877 -74901750 + GA-rich Low_complexity Low_complexity 3 85 0 406 240 39 0 chr9 42960881 42960985 -74901642 + MER58C DNA MER1_type 106 213 -2 2367 164 24 19 chr9 42960995 42961463 -74901164 - L1MA7 LINE L1 0 6291 5822 872 91 15 23 chr9 42963029 42963161 -74899466 - FLAM_C SINE Alu -2 131 1 2397 63 0 60 chr9 42964401 42964732 -74897895 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 42965942 42965963 -74896664 + AT_rich Low_complexity Low_complexity 1 21 0 1819 117 53 0 chr9 42967910 42968176 -74894451 + AluSc SINE Alu 1 322 0 379 0 0 0 chr9 42968176 42968218 -74894409 + (TAAA)n Simple_repeat Simple_repeat 4 76 0 21 0 0 0 chr9 42969536 42969557 -74893070 + AT_rich Low_complexity Low_complexity 1 21 0 2048 108 0 57 chr9 42969557 42969873 -74892754 + AluY SINE Alu 1 298 -13 543 193 0 93 chr9 42971003 42971164 -74891463 - L1ME1 LINE L1 -8 6158 6013 241 381 68 7 chr9 42973225 42973372 -74889255 + L2 LINE L2 3109 3264 -8 2152 126 0 0 chr9 42973817 42974119 -74888508 + AluY SINE Alu 4 305 -6 283 353 172 0 chr9 42975217 42975339 -74887288 - L2 LINE L2 -3 3269 3127 627 268 50 42 chr9 42975818 42976271 -74886356 + MLT1D LTR MaLR 7 505 0 192 77 0 0 chr9 42976649 42976675 -74885952 + (A)n Simple_repeat Simple_repeat 1 26 0 267 281 28 28 chr9 42977149 42977327 -74885300 + MLT1K LTR MaLR 88 265 -323 576 252 48 0 chr9 42977382 42977529 -74885098 - L2 LINE L2 0 3313 3160 312 312 208 9 chr9 42977584 42977805 -74884822 + MLT1K LTR MaLR 309 573 -15 187 350 21 57 chr9 42978079 42978273 -74884354 + L2 LINE L2 2738 2924 -390 1101 70 6 38 chr9 42979017 42979175 -74883452 - AluYb8 SINE Alu -165 153 1 1711 85 15 0 chr9 42979807 42980067 -74882560 + L1MA1 LINE L1 6039 6302 0 26 0 0 0 chr9 42980069 42980095 -74882532 + AT_rich Low_complexity Low_complexity 1 26 0 1773 139 0 0 chr9 42980938 42981190 -74881437 + AluSg SINE Alu 45 296 -14 611 85 0 0 chr9 42981378 42981460 -74881167 + L1PA4 LINE L1 7 88 -6058 31830 51 37 34 chr9 42981460 42986980 -74875647 + L1PA4 LINE L1 617 6152 -3 254 331 108 16 chr9 42987094 42987345 -74875282 + LTR16C LTR ERVL 169 442 -49 1305 175 59 20 chr9 42987817 42988120 -74874507 - LTR40b LTR ERVL 0 462 148 24 0 0 0 chr9 42988553 42988577 -74874050 + AT_rich Low_complexity Low_complexity 1 24 0 629 253 146 0 chr9 42991056 42991289 -74871338 - L1MC4 LINE L1 -180 7862 7596 610 103 0 0 chr9 42991669 42991756 -74870871 - AluSg/x SINE Alu -10 300 214 1143 111 6 12 chr9 42991756 42991918 -74870709 - AluSq SINE Alu -152 161 1 2409 70 0 23 chr9 42992568 42992870 -74869757 - AluSq SINE Alu -18 295 1 22 0 0 0 chr9 42994252 42994274 -74868353 + GC_rich Low_complexity Low_complexity 1 22 0 309 210 153 51 chr9 42994736 42994893 -74867734 - MER96B DNA MER1_type? -244 173 1 2104 85 24 3 chr9 42995582 42995875 -74866752 + AluSc SINE Alu 1 299 -10 21 36 0 0 chr9 42996668 42996696 -74865931 + AT_rich Low_complexity Low_complexity 1 28 0 1970 141 0 16 chr9 42997055 42997360 -74865267 - AluSx SINE Alu -12 300 1 27 29 0 0 chr9 42998622 42998656 -74863971 + AT_rich Low_complexity Low_complexity 1 34 0 2320 110 0 3 chr9 42998958 42999268 -74863359 + AluY SINE Alu 1 309 -2 26 50 0 0 chr9 43000716 43000756 -74861871 + AT_rich Low_complexity Low_complexity 1 40 0 1301 99 10 20 chr9 43001173 43001347 -74861280 - AluY SINE Alu -7 304 131 383 0 21 0 chr9 43001347 43001394 -74861233 + (TG)n Simple_repeat Simple_repeat 2 49 0 1301 99 10 20 chr9 43001394 43001420 -74861207 - AluY SINE Alu -180 131 106 262 0 0 0 chr9 43001422 43001458 -74861169 - AluY SINE Alu -130 171 136 441 0 0 0 chr9 43001458 43001507 -74861120 + (TG)n Simple_repeat Simple_repeat 2 50 0 2324 69 10 0 chr9 43001508 43001799 -74860828 - AluY SINE Alu -17 294 1 2081 130 7 0 chr9 43002025 43002324 -74860303 + AluSx SINE Alu 1 301 -11 3654 117 71 23 chr9 43002335 43002562 -74860065 + L1PA15 LINE L1 5522 5737 -428 2274 88 0 0 chr9 43002562 43002867 -74859760 + AluY SINE Alu 1 305 -6 3654 117 71 23 chr9 43002867 43003247 -74859380 + L1PA15 LINE L1 5737 6158 -7 334 317 148 0 chr9 43003331 43003473 -74859154 + MIR SINE MIR 74 236 -26 2021 258 64 27 chr9 43003588 43004645 -74857982 + L1MEc LINE L1 1562 2617 -3598 2283 103 0 3 chr9 43004645 43004947 -74857680 - AluSq SINE Alu -12 301 1 2021 258 64 27 chr9 43004947 43005179 -74857448 + L1MEc LINE L1 2617 2839 -3376 1741 231 26 30 chr9 43005970 43006500 -74856127 + L1M4c LINE L1 794 1323 -5061 2942 141 103 6 chr9 43006500 43007005 -74855622 + MER41C LTR ERV1 1 554 0 1741 231 26 30 chr9 43007005 43007084 -74855543 + L1M4c LINE L1 1323 1401 -4983 266 266 0 0 chr9 43007105 43007169 -74855458 + L1M4c LINE L1 1595 1658 -4726 * 4913 208 67 48 chr9 43007165 43007404 -74855223 + L1MC2 LINE L1 17 250 -6176 2161 128 10 0 chr9 43007404 43007709 -74854918 + AluSq SINE Alu 1 308 -5 4913 208 67 48 chr9 43007709 43010002 -74852625 + L1MC2 LINE L1 250 2575 -3851 1148 194 35 10 chr9 43010197 43010485 -74852142 + LTR43 LTR ERV1 176 470 -132 5211 235 47 81 chr9 43010567 43013104 -74849523 + L1MC2 LINE L1 2564 5014 -1412 1757 189 53 7 chr9 43013103 43013521 -74849106 + L1MC2 LINE L1 6187 6623 -1 * 1228 260 36 4 chr9 43013526 43014003 -74848624 + L1M4c LINE L1 2398 2889 -3493 452 266 18 50 chr9 43014007 43014183 -74848444 + L1M3 LINE L1 1491 1660 -4724 2477 70 0 0 chr9 43014183 43014482 -74848145 + AluY SINE Alu 1 299 -12 452 266 18 50 chr9 43014482 43014523 -74848104 + L1M3 LINE L1 1660 1701 -4683 4775 84 9 0 chr9 43014947 43015713 -74846914 + L1P3 LINE L1 4692 5461 -693 2421 45 7 7 chr9 43015736 43016044 -74846583 - AluY SINE Alu -3 308 1 903 116 177 22 chr9 43016044 43016225 -74846402 + THE1B LTR MaLR 156 364 0 295 288 8 23 chr9 43016227 43016359 -74846268 + L1M3 LINE L1 2616 2745 -3637 887 275 6 38 chr9 43116384 43116730 -74745897 + L1M4c LINE L1 3750 4084 -2298 8747 109 30 9 chr9 43116738 43122758 -74739869 - L1PA6 LINE L1 0 6154 11 1286 290 71 67 chr9 43122769 43122964 -74739663 + L1M4c LINE L1 4077 4270 -2112 1798 174 0 0 chr9 43122964 43123262 -74739365 + AluSx SINE Alu 15 312 0 1286 290 71 67 chr9 43123262 43124018 -74738609 + L1M4c LINE L1 4270 5007 -1375 1245 221 16 35 chr9 43124018 43124335 -74738292 + AluJb SINE Alu 1 311 -1 1286 290 71 67 chr9 43124335 43124563 -74738064 + L1M4c LINE L1 5007 5233 -1149 30 59 0 0 chr9 43125051 43125102 -74737525 + AT_rich Low_complexity Low_complexity 1 51 0 3699 226 40 38 chr9 43125807 43125889 -74736738 - L1PA16 LINE L1 -90 6076 5996 1949 124 3 0 chr9 43125889 43126198 -74736429 - AluSx SINE Alu 0 310 1 3699 226 40 38 chr9 43126198 43127640 -74734987 - L1PA16 LINE L1 -170 5996 4550 599 180 134 47 chr9 43128432 43128604 -74734023 + L1MA9 LINE L1 6126 6312 0 * 7872 246 55 22 chr9 43128590 43131611 -74731016 + L1M3 LINE L1 2719 5846 -570 3282 154 27 5 chr9 43132461 43133096 -74729531 + TAR1 Satellite telomeric 1420 2068 -43 422 99 6 88 chr9 43133240 43133411 -74729216 + (TTAGGG)n Simple_repeat Simple_repeat 5 161 0 10267 218 13 25 chr9 43133523 43136520 -74726107 - L1 LINE L1 -1699 4447 1497 22 56 0 0 chr9 43137615 43137651 -74724976 + AT_rich Low_complexity Low_complexity 1 36 0 962 160 36 27 chr9 43137664 43137889 -74724738 - Charlie5 DNA MER1_type -83 2529 2303 385 222 56 0 chr9 43138817 43138925 -74723702 - MER20B DNA MER1_type -148 635 522 186 48 24 48 chr9 43138950 43138992 -74723635 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2213 71 0 0 chr9 43138992 43139258 -74723369 - L1PA6 LINE L1 -11 6143 5878 661 319 93 40 chr9 43139680 43140078 -74722549 - MER20B DNA MER1_type -273 510 92 551 278 87 20 chr9 43141068 43141320 -74721307 - L2 LINE L2 -4 3309 3041 1356 193 46 49 chr9 43141400 43141705 -74720922 - AluJo SINE Alu -8 304 1 884 179 91 132 chr9 43142117 43142602 -74720025 + MER4C LTR ERV1 1 465 0 371 274 48 8 chr9 43142890 43143014 -74719613 - MIR3 SINE MIR -5 203 75 2373 75 0 0 chr9 43143078 43143372 -74719255 - AluY SINE Alu -17 294 1 1059 90 0 0 chr9 43143372 43143505 -74719122 - AluY SINE Alu -177 134 2 418 328 8 0 chr9 43143509 43143643 -74718984 - MIR SINE MIR -102 160 26 297 307 171 22 chr9 43144379 43144653 -74717974 + L1MC4a LINE L1 5560 5874 -1934 773 186 51 0 chr9 43144767 43144923 -74717704 - L1PA16 LINE L1 -44 6122 5959 190 246 180 74 chr9 43145398 43145520 -74717107 + MIR SINE MIR 48 182 -80 2244 98 0 0 chr9 43145705 43146002 -74716625 - AluY SINE Alu -14 297 1 282 270 17 0 chr9 43147089 43147204 -74715423 + (CA)n Simple_repeat Simple_repeat 2 118 0 286 207 0 27 chr9 43147266 43147377 -74715250 + GA-rich Low_complexity Low_complexity 2 109 0 221 155 17 0 chr9 43148489 43148547 -74714080 + (CA)n Simple_repeat Simple_repeat 2 60 0 1948 189 83 30 chr9 43148555 43149014 -74713613 + LTR2B LTR ERV1 8 490 0 389 212 8 0 chr9 43149018 43149136 -74713491 + GA-rich Low_complexity Low_complexity 1 119 0 748 91 25 25 chr9 43150027 43150148 -74712479 - 5S rRNA rRNA 0 121 1 8799 155 30 80 chr9 43150527 43152398 -74710229 - L1M1 LINE L1 -4311 3254 1477 * 10865 199 28 6 chr9 43152371 43154657 -74707970 - L1P LINE L1 -796 6769 4435 237 83 0 0 chr9 43155572 43155608 -74707019 + (CA)n Simple_repeat Simple_repeat 2 37 0 345 226 0 12 chr9 43155614 43155698 -74706929 + MER103 DNA DNA 12 94 -72 269 236 0 22 chr9 43155755 43155844 -74706783 + L2 LINE L2 1997 2083 -1231 2611 212 19 0 chr9 43156979 43157494 -74705133 - L1PB4 LINE L1 -12 6144 5620 301 231 51 0 chr9 43157769 43157847 -74704780 + L2 LINE L2 3191 3272 0 2195 191 104 38 chr9 43158062 43158591 -74704036 + LTR6A LTR ERV1 1 564 0 201 268 183 0 chr9 43159304 43159375 -74703252 + L2 LINE L2 3230 3313 0 180 336 161 15 chr9 43159459 43159596 -74703031 - L2 LINE L2 -1 3271 3115 21 89 0 0 chr9 43160402 43160458 -74702169 + AT_rich Low_complexity Low_complexity 1 56 0 604 293 100 11 chr9 43160500 43160848 -74701779 - MLT1H1 LTR MaLR -120 422 32 2537 62 0 0 chr9 43161606 43161910 -74700717 - AluY SINE Alu -7 304 1 371 106 0 45 chr9 43161910 43161969 -74700658 - L1P LINE L1 -812 5356 5304 3754 169 31 13 chr9 43161973 43162654 -74699973 + L1PA16 LINE L1 5390 6082 -84 658 125 0 19 chr9 43162659 43162763 -74699864 + L1PA16 LINE L1 6044 6145 -21 13229 208 95 17 chr9 43162774 43165815 -74696812 + L1M1 LINE L1 17 3294 -4271 10522 44 4 1 chr9 43165815 43167807 -74694820 - L1PA4 LINE L1 -1 6154 4161 893 260 110 61 chr9 43167817 43168793 -74693834 + L1M4c LINE L1 1686 2613 -3769 663 163 7 59 chr9 43168793 43168928 -74693699 + FLAM_C SINE Alu 1 128 -5 893 260 110 61 chr9 43168928 43169730 -74692897 + L1M4c LINE L1 2613 3650 -2732 1335 152 38 4 chr9 43169915 43170179 -74692448 - L1MB1 LINE L1 -14 6175 5903 27 29 0 0 chr9 43170406 43170440 -74692187 + AT_rich Low_complexity Low_complexity 1 34 0 745 264 42 62 chr9 43170485 43170891 -74691736 + L1MD2 LINE L1 5943 6340 -19 348 321 43 31 chr9 43170938 43171100 -74691527 + MIR SINE MIR 81 244 -18 267 133 0 0 chr9 43172181 43172226 -74690401 + (TA)n Simple_repeat Simple_repeat 2 46 0 274 284 46 46 chr9 43172249 43172358 -74690269 - MIR SINE MIR -73 189 81 564 255 78 86 chr9 43172394 43172790 -74689837 - L1MD2 LINE L1 -10 6349 5957 324 214 0 24 chr9 43173180 43173306 -74689321 + (TA)n Simple_repeat Simple_repeat 2 124 0 578 325 4 40 chr9 43173469 43173697 -74688930 - L2 LINE L2 0 3313 3094 2855 51 0 0 chr9 43176235 43176589 -74686038 - L1PA5 LINE L1 -7 6147 5794 194 0 39 0 chr9 43178963 43178989 -74683638 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 503 63 0 0 chr9 43179000 43179063 -74683564 - AluSq/x SINE Alu -183 129 67 517 78 0 0 chr9 43179071 43179135 -74683492 + AluSg/x SINE Alu 157 220 -92 1772 152 13 0 chr9 43179254 43179557 -74683070 - LTR8A LTR ERV1 -420 307 1 1940 122 4 0 chr9 43180309 43180635 -74681992 - AluSx SINE Alu 0 329 3 556 182 17 98 chr9 43180951 43181187 -74681440 - MER52A LTR ERV1 -1538 217 1 1382 165 44 40 chr9 43181188 43181509 -74681118 + LTR8 LTR ERV1 365 686 -5 524 186 9 0 chr9 43181526 43181639 -74680988 + (TA)n Simple_repeat Simple_repeat 1 114 0 189 241 148 0 chr9 43181809 43181863 -74680764 - L2 LINE L2 0 3272 3211 825 188 52 96 chr9 43182627 43182856 -74679771 + MER20 DNA MER1_type 1 219 0 233 284 23 45 chr9 43183578 43183666 -74678961 + L2 LINE L2 3182 3267 -46 411 320 66 66 chr9 43184951 43185024 -74677603 + L1ME LINE L1 5299 5371 -750 2254 110 0 3 chr9 43185024 43185333 -74677294 + AluSg SINE Alu 1 308 -2 411 320 66 66 chr9 43185333 43185593 -74677034 + L1ME LINE L1 5370 5629 -492 432 299 46 62 chr9 43186184 43186425 -74676202 - Charlie8 DNA MER1_type -1978 439 203 1192 253 67 47 chr9 43187001 43187330 -74675297 + L1MDb LINE L1 789 1110 -5296 2156 109 3 3 chr9 43187330 43187623 -74675004 - AluSc SINE Alu -16 293 1 1192 253 67 47 chr9 43187623 43188004 -74674623 + L1MDb LINE L1 1110 1477 -4929 301 225 12 0 chr9 43188001 43188081 -74674546 + L1MDb LINE L1 2747 2827 -3579 * 525 299 44 20 chr9 43189258 43189462 -74673165 + MIR SINE MIR 53 261 -1 233 185 12 136 chr9 43189547 43189628 -74672999 - L2 LINE L2 0 3272 3202 2156 103 0 0 chr9 43190671 43190953 -74671674 + AluSc SINE Alu 1 282 -27 232 365 17 0 chr9 43191176 43191291 -74671336 - L3b LINE CR1 -176 1407 1291 3317 181 56 15 chr9 43192621 43193367 -74669260 - L1MC2 LINE L1 -9 6335 5559 23 0 0 0 chr9 43193580 43193603 -74669024 + AT_rich Low_complexity Low_complexity 1 23 0 427 243 42 37 chr9 43194253 43194442 -74668185 + L1MCa LINE L1 1464 1653 -4773 1796 194 0 0 chr9 43194533 43194826 -74667801 - AluJb SINE Alu -19 293 1 2230 214 27 55 chr9 43194827 43195284 -74667343 + L1MD3 LINE L1 7360 7796 -199 2058 139 0 0 chr9 43195284 43195578 -74667049 + AluSx SINE Alu 1 294 -18 2230 214 27 55 chr9 43195578 43195752 -74666875 + L1MD3 LINE L1 7796 7973 -22 1561 266 38 19 chr9 43195754 43196317 -74666310 + L1M3b LINE L1 1216 1812 -4753 999 160 55 68 chr9 43196649 43196783 -74665844 - L1MC/D LINE L1 -743 5403 5400 1957 114 33 0 chr9 43196783 43197089 -74665538 - L1PA16 LINE L1 -9 6157 5842 999 160 55 68 chr9 43197089 43197264 -74665363 - L1MC/D LINE L1 -746 5400 5224 2425 102 0 0 chr9 43198448 43198761 -74663866 - AluSq SINE Alu 0 313 1 945 183 17 29 chr9 43199147 43199322 -74663305 - AluSg/x SINE Alu -6 306 134 2093 131 7 3 chr9 43199322 43199620 -74663007 - AluSx SINE Alu -13 299 1 497 127 13 0 chr9 43200035 43200114 -74662513 - MADE1 DNA Mariner 0 80 1 991 248 22 0 chr9 43201462 43201684 -74660943 + MIR SINE MIR 36 262 0 531 220 55 0 chr9 43202249 43202358 -74660269 + MIR3 SINE MIR 82 196 -12 180 350 0 50 chr9 43202608 43202688 -74659939 + L2 LINE L2 3197 3272 0 297 0 0 0 chr9 43203147 43203180 -74659447 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 194 299 65 37 chr9 43205292 43205399 -74657228 + L2 LINE L2 3197 3306 -7 215 378 199 0 chr9 43205735 43205891 -74656736 - MIR3 SINE MIR -6 202 16 25 31 0 0 chr9 43206281 43206313 -74656314 + AT_rich Low_complexity Low_complexity 1 32 0 616 111 56 0 chr9 43207162 43207270 -74655357 - L1 LINE L1 -1910 4236 4123 * 4801 226 90 35 chr9 43207265 43207656 -74654971 + L1M3b LINE L1 2917 3285 -4280 1676 187 58 0 chr9 43207656 43207982 -74654645 - MER7A DNA MER2_type 0 346 4 4801 226 90 35 chr9 43207982 43209657 -74652970 + L1M3b LINE L1 3285 5104 -2461 2815 187 21 0 chr9 43209780 43210310 -74652317 + Tigger1 DNA MER2_type 1 541 -1877 543 191 0 0 chr9 43210310 43210404 -74652223 - FLAM_A SINE Alu -48 94 1 802 257 73 2 chr9 43210490 43210910 -74651717 + MER90 LTR ERV1 56 574 -1 689 198 107 43 chr9 43212572 43212759 -74649868 + MIR SINE MIR 2 200 -62 225 281 162 36 chr9 43212862 43213029 -74649598 - L2 LINE L2 -5 3308 3121 286 238 79 0 chr9 43213373 43213436 -74649191 - MLT1H LTR MaLR -181 414 347 216 0 0 0 chr9 43213538 43213562 -74649065 + (A)n Simple_repeat Simple_repeat 1 24 0 2043 121 3 23 chr9 43213565 43213870 -74648757 + AluSc SINE Alu 1 299 -10 335 214 42 0 chr9 43213878 43213980 -74648647 - MLT1H LTR MaLR -378 171 39 239 290 45 22 chr9 43214074 43214298 -74648329 - L1M4 LINE L1 -1444 4702 4474 1268 163 10 58 chr9 43214429 43214723 -74647904 - L1MB7 LINE L1 -170 6014 5735 308 250 8 67 chr9 43215069 43215189 -74647438 - MER21-int LTR ERV1 -55 4136 4024 1828 169 77 14 chr9 43215200 43215731 -74646896 - L1MB7 LINE L1 -439 5739 5168 2494 112 3 35 chr9 43215731 43216107 -74646520 - THE1B LTR MaLR 0 364 1 1828 169 77 14 chr9 43216107 43216179 -74646448 - L1MB7 LINE L1 -1010 5168 5102 3277 145 33 35 chr9 43216218 43216881 -74645746 + L1MB3 LINE L1 5519 6180 -3 2394 156 35 9 chr9 43216913 43217343 -74645284 + MLT1C LTR MaLR 27 467 0 2237 251 45 38 chr9 43217358 43218096 -74644531 - MER21-int LTR ERV1 -1021 3170 2428 6060 159 10 76 chr9 43218126 43219314 -74643313 - MSTA-int LTR MaLR -349 1231 136 1980 167 0 13 chr9 43219314 43219625 -74643002 - AluSx SINE Alu -5 307 1 6060 159 10 76 chr9 43219625 43219753 -74642874 - MSTA-int LTR MaLR -1444 136 1 1789 160 163 39 chr9 43219753 43220134 -74642493 - MSTA LTR MaLR 0 428 1 382 304 81 69 chr9 43220334 43220669 -74641958 + L1MEd LINE L1 145 483 -5722 264 340 176 0 chr9 43220732 43220759 -74641868 + L1MEd LINE L1 532 553 -5652 312 91 0 0 chr9 43220759 43220803 -74641824 + (TA)n Simple_repeat Simple_repeat 1 44 0 264 340 176 0 chr9 43220803 43220934 -74641693 + L1MEd LINE L1 553 718 -5487 231 261 58 0 chr9 43221143 43221212 -74641415 + L1M3de LINE L1 1269 1341 -4795 501 225 3 1 chr9 43221235 43221352 -74641275 + L1M3de LINE L1 1640 1978 -4238 277 266 16 0 chr9 43221352 43221416 -74641211 + MER52A LTR ERV1 1 65 -1690 2280 226 158 24 chr9 43221727 43222359 -74640268 + MER52A LTR ERV1 61 777 -978 * 4633 166 42 21 chr9 43222334 43223161 -74639466 + MER52A LTR ERV1 911 1755 0 3224 231 73 43 chr9 43223161 43223750 -74638877 + L1MEd LINE L1 1743 2313 -3902 2097 110 16 32 chr9 43223750 43224060 -74638567 - AluSq SINE Alu -8 305 1 3224 231 73 43 chr9 43224060 43224880 -74637747 + L1MEd LINE L1 2313 3172 -3043 2040 118 4 4 chr9 43224880 43225160 -74637467 + AluSx SINE Alu 7 286 -26 3224 231 73 43 chr9 43225160 43225384 -74637243 + L1MEd LINE L1 3172 3388 -2827 279 167 37 0 chr9 43225381 43225435 -74637192 - L1MC3 LINE L1 -534 7251 7196 * 227 330 0 10 chr9 43225435 43225532 -74637095 - MLT1F1 LTR MaLR -436 131 36 603 157 164 0 chr9 43225535 43225669 -74636958 - L1MC3 LINE L1 -689 7096 6941 180 236 55 0 chr9 43225699 43225754 -74636873 + L2 LINE L2 2911 2968 -304 226 288 62 58 chr9 43226276 43226519 -74636108 - L2 LINE L2 -521 2793 2550 253 285 82 73 chr9 43226572 43226912 -74635715 - L2 LINE L2 -652 2662 2320 507 260 36 104 chr9 43227002 43227367 -74635260 - L1ME LINE L1 -342 5779 5435 232 244 207 18 chr9 43227935 43228073 -74634554 + MIR SINE MIR 18 144 -64 800 173 0 8 chr9 43229609 43229742 -74632885 + FLAM_C SINE Alu 2 133 0 298 247 85 62 chr9 43229875 43230099 -74632528 + L1ME4a LINE L1 5664 5887 -234 2403 242 35 41 chr9 43230135 43230188 -74632439 + L1M4c LINE L1 1609 1661 -4721 2236 105 0 23 chr9 43230188 43230492 -74632135 - AluSx SINE Alu -14 298 2 2403 242 35 41 chr9 43230492 43231924 -74630703 + L1M4c LINE L1 1661 3193 -3189 22 0 0 0 chr9 43232682 43232704 -74629923 + AT_rich Low_complexity Low_complexity 1 22 0 14602 175 38 48 chr9 43232711 43236598 -74626029 + L1M1 LINE L1 2005 5882 -654 2352 97 0 0 chr9 43237596 43237907 -74624720 + AluY SINE Alu 1 311 0 21 0 0 0 chr9 43238381 43238402 -74624225 + AT_rich Low_complexity Low_complexity 1 21 0 230 325 111 65 chr9 43239844 43240303 -74622324 + L1MEd LINE L1 78 557 -5562 1037 128 76 107 chr9 43240316 43240588 -74622039 + LTR12 LTR ERV1 3 1552 -480 228 258 34 22 chr9 43240665 43240754 -74621873 + LTR30 LTR ERV1 553 642 -80 679 130 4 1 chr9 43240757 43240872 -74621755 + LTR12 LTR ERV1 73 714 0 995 251 134 89 chr9 43240911 43241836 -74620791 + L1ME3A LINE L1 4835 5840 -330 4909 151 68 4 chr9 43241836 43242670 -74619957 + L1MC1 LINE L1 5435 6322 -11 995 251 134 89 chr9 43242670 43243005 -74619622 + L1ME3A LINE L1 5840 6159 -11 270 280 101 24 chr9 43243017 43243185 -74619442 + L1 LINE L1 3359 3539 -2607 776 274 91 11 chr9 43243287 43243649 -74618978 + L1 LINE L1 3714 4104 -2042 257 243 40 0 chr9 43243648 43243722 -74618905 + L1 LINE L1 4633 4709 -1437 * 298 269 34 69 chr9 43243859 43244034 -74618593 + L1 LINE L1 4889 5057 -1089 1981 126 0 0 chr9 43244627 43244904 -74617723 + AluSc SINE Alu 1 277 -32 262 0 0 0 chr9 43245735 43245769 -74616858 - AluY SINE Alu -5 294 261 1385 224 55 28 chr9 43246804 43247217 -74615410 - MER67B LTR ERV1 -243 418 1 862 95 117 0 chr9 43247561 43247698 -74614929 - AluSg/x SINE Alu -28 282 130 47 19 0 0 chr9 43247899 43247953 -74614674 + AT_rich Low_complexity Low_complexity 1 54 0 824 188 19 54 chr9 43248364 43248624 -74614003 + MER67B LTR ERV1 1 117 -397 1664 118 0 0 chr9 43248635 43248864 -74613763 + AluSg SINE Alu 11 239 -71 1433 191 44 14 chr9 43248905 43249199 -74613428 + MER67D LTR ERV1 104 406 -108 1012 203 20 0 chr9 43249720 43249922 -74612705 - Tigger6a DNA MER2_type 0 1083 878 684 212 101 40 chr9 43250660 43250858 -74611769 + MIR SINE MIR 2 211 -51 229 245 19 0 chr9 43250961 43251014 -74611613 - MIR SINE MIR -10 252 199 240 271 29 0 chr9 43251408 43251478 -74611149 - MLT1F LTR MaLR -113 429 358 * 265 265 88 0 chr9 43251451 43251519 -74611108 - MLT1H LTR MaLR -172 423 350 2042 119 3 14 chr9 43251641 43251934 -74610693 + AluSc SINE Alu 1 290 -19 335 226 42 0 chr9 43251947 43252047 -74610580 - MLT1H LTR MaLR -378 171 39 324 290 45 22 chr9 43252141 43252365 -74610262 - L1M4 LINE L1 -1444 4702 4474 1679 136 217 9 chr9 43252545 43252868 -74609759 - MSTA LTR MaLR -38 390 1 9992 140 17 35 chr9 43252870 43254475 -74608152 - MSTA-int LTR MaLR -2 1578 3 1943 133 173 32 chr9 43254477 43254852 -74607775 - MSTA LTR MaLR 0 428 1 195 129 0 0 chr9 43256320 43256351 -74606276 + (TA)n Simple_repeat Simple_repeat 2 32 0 354 206 32 0 chr9 43256693 43256756 -74605871 - MER2 DNA MER2_type 0 345 281 1000 186 42 10 chr9 43256786 43256979 -74605648 - MER2 DNA MER2_type -135 210 12 24 0 0 0 chr9 43258015 43258039 -74604588 + AT_rich Low_complexity Low_complexity 1 24 0 1878 96 7 51 chr9 43258257 43258549 -74604078 + AluSg SINE Alu 2 280 -30 29 0 0 0 chr9 43259683 43259712 -74602915 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr9 43260022 43260060 -74602567 + (CA)n Simple_repeat Simple_repeat 2 39 0 680 198 0 8 chr9 43260354 43260480 -74602147 - FLAM_A SINE Alu -6 127 3 1631 135 4 8 chr9 43261779 43262039 -74600588 - L1MA5 LINE L1 -6 6294 6036 306 0 0 0 chr9 43262184 43262218 -74600409 + (TG)n Simple_repeat Simple_repeat 2 35 0 521 269 7 13 chr9 43262671 43262687 -74599940 - L1MA10 LINE L1 0 6334 6319 2343 246 13 21 chr9 43262687 43263296 -74599331 - L1ME1 LINE L1 -7 6159 5556 1465 243 126 22 chr9 43263299 43263444 -74599183 - L1ME1 LINE L1 -2281 3865 3737 2231 104 0 3 chr9 43263444 43263741 -74598886 + AluSg SINE Alu 1 296 -14 1465 243 126 22 chr9 43263741 43264151 -74598476 - L1ME1 LINE L1 -2409 3737 3252 6119 141 156 18 chr9 43264154 43265277 -74597350 + MER52C LTR ERV1 1 1278 0 21 36 0 0 chr9 43265800 43265828 -74596799 + AT_rich Low_complexity Low_complexity 1 28 0 973 146 0 110 chr9 43266216 43266274 -74596353 + L1 LINE L1 4325 4388 -1758 1632 77 5 27 chr9 43266274 43266496 -74596131 + AluSq SINE Alu 1 217 -96 973 146 0 110 chr9 43266496 43266683 -74595944 + L1 LINE L1 4388 4543 -1603 5232 136 40 26 chr9 43266695 43267594 -74595033 - L1MA4 LINE L1 -1 6299 5388 810 102 19 0 chr9 43267694 43267802 -74594825 - AluSq/x SINE Alu -202 111 2 787 122 8 8 chr9 43267803 43267926 -74594701 - THE1C-int LTR MaLR -1457 123 1 1745 157 77 10 chr9 43267926 43268238 -74594389 - THE1C LTR MaLR 0 375 43 22 70 0 0 chr9 43268772 43268815 -74593812 + AT_rich Low_complexity Low_complexity 1 43 0 2317 78 17 0 chr9 43268875 43269171 -74593456 + AluY SINE Alu 1 301 -10 1473 210 0 33 chr9 43269369 43269669 -74592958 - AluJo SINE Alu -12 300 11 519 215 135 77 chr9 43269892 43270218 -74592409 - L1MC5 LINE L1 -14 7947 7603 2128 129 0 0 chr9 43270223 43270518 -74592109 - AluY SINE Alu -16 295 1 2553 190 113 24 chr9 43270518 43271135 -74591492 - Tigger6a DNA MER2_type -196 887 216 1683 220 42 37 chr9 43271126 43271581 -74591046 + MLT1C LTR MaLR 11 467 0 * 1016 212 9 19 chr9 43271581 43271793 -74590834 - Tigger6a DNA MER2_type -872 211 2 184 326 150 18 chr9 43271837 43272064 -74590563 + L2 LINE L2 2928 3184 -129 462 295 112 31 chr9 43272116 43272564 -74590063 + L1ME3A LINE L1 5465 5948 -222 270 222 16 48 chr9 43273613 43273676 -74588951 - MIR SINE MIR -130 78 18 2063 167 31 51 chr9 43274652 43275102 -74587525 - MER66B LTR ERV1 0 486 46 345 314 44 61 chr9 43276392 43276688 -74585939 + MER31-int LTR ERV1 726 1016 -3920 2258 63 33 10 chr9 43277503 43277805 -74584822 + AluY SINE Alu 1 309 -2 646 108 0 0 chr9 43277818 43277911 -74584716 + AluSg/x SINE Alu 218 310 0 237 65 0 0 chr9 43277916 43277947 -74584680 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 5017 138 27 32 chr9 43279210 43279791 -74582836 + L1PB3 LINE L1 5237 5814 -340 2033 125 0 0 chr9 43279791 43280087 -74582540 + AluSg1 SINE Alu 1 296 -13 5017 138 27 32 chr9 43280087 43280425 -74582202 + L1PB3 LINE L1 5814 6152 -2 8227 188 15 24 chr9 43280742 43280755 -74581872 - L1P LINE L1 -1851 4295 4283 6194 110 13 25 chr9 43280755 43282519 -74580108 - L1PA14 LINE L1 0 6161 4423 8227 188 15 24 chr9 43282519 43283504 -74579123 - L1P LINE L1 -1863 4283 3316 1991 159 7 0 chr9 43283504 43283812 -74578815 - AluSx SINE Alu -2 310 1 8227 188 15 24 chr9 43283812 43284558 -74578069 - L1P LINE L1 -2830 3316 2565 1768 96 4 63 chr9 43284660 43284931 -74577696 - AluSq SINE Alu -58 255 1 433 226 115 51 chr9 43284937 43285172 -74577455 - L1MC5 LINE L1 -363 7598 7349 1002 265 94 33 chr9 43285613 43286117 -74576510 - L2 LINE L2 -165 3148 2606 327 25 0 0 chr9 43286723 43286763 -74575864 + (TG)n Simple_repeat Simple_repeat 2 41 0 209 333 0 0 chr9 43286764 43286821 -74575806 + MER5A DNA MER1_type 69 125 -64 227 232 29 14 chr9 43288546 43288615 -74574012 + L1MCa LINE L1 1315 1384 -5042 2410 72 3 0 chr9 43288670 43288974 -74573653 + AluY SINE Alu 1 305 -6 3535 191 32 10 chr9 43289020 43289747 -74572880 - L1 LINE L1 -855 6710 5968 2664 256 71 33 chr9 43289742 43290709 -74571918 - L1 LINE L1 -3579 3986 3057 * 2025 108 63 0 chr9 43290709 43290996 -74571631 - AluSc SINE Alu -4 305 1 2664 256 71 33 chr9 43290996 43292027 -74570600 - L1 LINE L1 -4508 3057 2048 1554 253 23 25 chr9 43292453 43292891 -74569736 - L1 LINE L1 -5844 1652 1216 2451 225 31 34 chr9 43292891 43293067 -74569560 - L1MD3 LINE L1 -20 7975 7800 2007 150 0 0 chr9 43293067 43293361 -74569266 - AluSx SINE Alu -18 294 1 2451 225 31 34 chr9 43293361 43293802 -74568825 - L1MD3 LINE L1 -195 7800 7360 1789 188 3 0 chr9 43293803 43294095 -74568532 + AluJb SINE Alu 1 293 -19 387 264 28 50 chr9 43294197 43294379 -74568248 - L1MCa LINE L1 -4785 1641 1464 7585 32 7 0 chr9 43295009 43295912 -74566715 - L1P LINE L1 -910 5236 4328 1347 61 0 0 chr9 43296030 43296193 -74566434 + AluSg SINE Alu 1 163 -147 234 187 28 75 chr9 43296254 43296361 -74566266 + (CCCCAA)n Simple_repeat Simple_repeat 1 102 0 22 21 0 62 chr9 43296810 43296834 -74565793 + AT_rich Low_complexity Low_complexity 1 22 -23 1860 126 47 4 chr9 43296834 43296994 -74565633 - AluSq SINE Alu -22 291 113 261 0 0 0 chr9 43296994 43297023 -74565604 + (TG)n Simple_repeat Simple_repeat 2 30 0 1860 126 47 4 chr9 43297023 43297139 -74565488 - AluSq SINE Alu -200 113 3 22 21 0 62 chr9 43297139 43297162 -74565465 + AT_rich Low_complexity Low_complexity 22 45 0 1451 189 29 21 chr9 43297299 43297580 -74565047 + AluJo SINE Alu 7 289 -23 39 74 0 0 chr9 43297742 43297823 -74564804 + AT_rich Low_complexity Low_complexity 1 81 0 238 311 123 8 chr9 43297981 43298216 -74564411 - L1ME LINE L1 -478 5643 5382 4806 252 28 24 chr9 43298328 43298939 -74563688 + L1PA15-16 LINE L1 1954 2561 -4288 2120 126 7 0 chr9 43298939 43299232 -74563395 - AluSx SINE Alu -17 295 1 4806 252 28 24 chr9 43299232 43300800 -74561827 + L1PA15-16 LINE L1 2561 4147 -2702 3348 190 29 3 chr9 43300808 43301424 -74561203 + MSTB-int LTR MaLR 1020 1651 0 1731 237 16 0 chr9 43301424 43301795 -74560832 + MSTB LTR MaLR 1 377 -49 2178 224 20 6 chr9 43301797 43302287 -74560340 + L1 LINE L1 4150 4646 -2203 1818 132 32 4 chr9 43302287 43302563 -74560064 + AluSx SINE Alu 2 286 -22 255 93 0 0 chr9 43302563 43302606 -74560021 + (CAAAC)n Simple_repeat Simple_repeat 2 44 0 355 183 0 14 chr9 43302613 43302684 -74559943 + L1 LINE L1 2769 2838 -3308 214 311 0 33 chr9 43303540 43303630 -74558997 + C-rich Low_complexity Low_complexity 4 90 0 490 234 70 87 chr9 43304866 43305590 -74557037 + HSREP522 Satellite telomeric 1 712 -123 323 303 156 50 chr9 43306305 43306543 -74556084 - L1M2 LINE L1 -5605 1244 982 432 298 78 105 chr9 43306697 43307069 -74555558 - L1MDb LINE L1 -5685 724 363 800 324 106 21 chr9 43307095 43307568 -74555059 - L1MDb LINE L1 -5793 616 104 24 0 0 0 chr9 43307695 43307719 -74554908 + AT_rich Low_complexity Low_complexity 1 24 0 2039 118 4 0 chr9 43308093 43308372 -74554255 - AluSc SINE Alu -19 290 11 232 208 0 0 chr9 43308615 43308663 -74553964 + MER67B LTR ERV1 38 85 -576 1375 132 15 0 chr9 43308767 43308972 -74553655 + LTR8A LTR ERV1 100 307 -420 537 104 0 0 chr9 43309091 43309158 -74553469 - AluSg/x SINE Alu -92 218 152 * 772 115 0 0 chr9 43309154 43309250 -74553377 + AluSq/x SINE Alu 34 129 -183 198 0 0 0 chr9 43309261 43309283 -74553344 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 379 291 53 46 chr9 43311259 43311410 -74551217 + L2 LINE L2 3121 3272 0 182 137 78 78 chr9 43314084 43314135 -74548492 + MER5A DNA MER1_type 83 133 -56 198 0 0 0 chr9 43315058 43315080 -74547547 + (CCCCCT)n Simple_repeat Simple_repeat 1 22 0 279 157 0 0 chr9 43315265 43315316 -74547311 + GA-rich Low_complexity Low_complexity 4 54 0 21 0 0 0 chr9 43315791 43315812 -74546815 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 43316522 43316544 -74546083 + AT_rich Low_complexity Low_complexity 1 22 0 222 317 0 0 chr9 43317201 43317261 -74545366 + (CATA)n Simple_repeat Simple_repeat 4 63 0 9386 44 9 1 chr9 43318500 43319562 -74543065 - MER11C LTR ERVK 0 1071 1 2110 37 0 71 chr9 43320164 43320459 -74542168 - AluY SINE Alu -12 299 26 2727 141 45 7 chr9 43321400 43321847 -74540780 + MER4C LTR ERV1 2 465 0 695 328 23 8 chr9 43322645 43322901 -74539726 - MIR SINE MIR -1 261 2 510 312 110 13 chr9 43323562 43323799 -74538828 + MIR SINE MIR 3 262 0 528 283 61 42 chr9 43324366 43324578 -74538049 - MLT1K LTR MaLR -1 587 372 1236 284 70 32 chr9 43324736 43325094 -74537533 - MLT1J LTR MaLR 0 511 129 2008 130 57 41 chr9 43325094 43325463 -74537164 - THE1C LTR MaLR 0 375 1 1236 284 70 32 chr9 43325463 43325572 -74537055 - MLT1J LTR MaLR -382 129 26 306 0 0 0 chr9 43325907 43325941 -74536686 + (CA)n Simple_repeat Simple_repeat 2 35 0 279 266 71 44 chr9 43326370 43326483 -74536144 + MIR3 SINE MIR 67 182 -26 1120 203 28 0 chr9 43326969 43327181 -74535446 + MER20 DNA MER1_type 1 218 -1 4819 170 69 45 chr9 43327346 43328392 -74534235 - MER11C LTR ERVK 0 1071 1 274 309 43 36 chr9 43329577 43329716 -74532911 - MIR SINE MIR -111 151 12 238 261 0 0 chr9 43329839 43329885 -74532742 + MER5A DNA MER1_type 59 104 -85 306 211 42 0 chr9 43330058 43330129 -74532498 + MER5A DNA MER1_type 116 189 0 204 40 0 0 chr9 43330361 43330386 -74532241 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr9 43330654 43330676 -74531951 + AT_rich Low_complexity Low_complexity 1 22 0 458 211 96 36 chr9 43330901 43331067 -74531560 - L2 LINE L2 -1 3312 3137 514 314 57 41 chr9 43331525 43331770 -74530857 - MIR SINE MIR 0 262 14 184 287 58 58 chr9 43331949 43332036 -74530591 + MIR SINE MIR 159 245 -17 744 107 48 0 chr9 43332233 43332336 -74530291 + AluSq/x SINE Alu 2 109 -204 4015 237 57 12 chr9 43332837 43333886 -74528741 + L1MC4a LINE L1 6712 7807 -1 600 356 8 8 chr9 43334144 43334380 -74528247 + MIR SINE MIR 27 262 0 260 0 0 54 chr9 43335914 43335951 -74526676 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 774 175 0 0 chr9 43336151 43336265 -74526362 + AluJb SINE Alu 2 115 -197 980 112 0 0 chr9 43336265 43336390 -74526237 + AluSg/x SINE Alu 170 294 -18 438 244 92 0 chr9 43336528 43336647 -74525980 + L2 LINE L2 3180 3309 -4 457 250 230 0 chr9 43337332 43337480 -74525147 - MIR SINE MIR -8 254 73 257 298 93 6 chr9 43339569 43339730 -74522897 - HAL1 LINE L1 -814 1693 1519 417 300 70 13 chr9 43339776 43340006 -74522621 + HAL1 LINE L1 1491 1733 -774 1767 166 0 7 chr9 43340998 43341306 -74521321 + AluSx SINE Alu 1 306 0 4929 150 48 27 chr9 43341520 43342036 -74520591 - L1MA9 LINE L1 0 6312 5765 372 22 0 0 chr9 43342036 43342081 -74520546 + (TG)n Simple_repeat Simple_repeat 2 46 0 4929 150 48 27 chr9 43342081 43342525 -74520102 - L1MA9 LINE L1 -547 5765 5332 2008 167 45 31 chr9 43342525 43342884 -74519743 + THE1B LTR MaLR 1 364 0 11506 122 11 0 chr9 43342884 43344447 -74518180 + THE1B-int LTR MaLR 1 1580 0 2387 121 36 36 chr9 43344447 43344811 -74517816 + THE1B LTR MaLR 1 364 0 4997 197 65 16 chr9 43344821 43345669 -74516958 - L1MA9 LINE L1 -857 5289 4373 2098 91 40 0 chr9 43345669 43345945 -74516682 - AluY SINE Alu -24 287 1 4997 197 65 16 chr9 43345945 43346209 -74516418 - L1MA9 LINE L1 -1773 4373 4123 * 5542 223 88 35 chr9 43346204 43346594 -74516033 + L1M1 LINE L1 2917 3285 -4280 1937 182 30 3 chr9 43346594 43346929 -74515698 - MER7A DNA MER2_type -1 345 4 5542 223 88 35 chr9 43346929 43348608 -74514019 + L1M1 LINE L1 3285 5104 -2461 2999 191 25 0 chr9 43348731 43349259 -74513368 + Tigger1 DNA MER2_type 1 541 -1877 541 202 0 0 chr9 43349259 43349353 -74513274 - FLAM_A SINE Alu -48 94 1 743 275 12 0 chr9 43349439 43349610 -74513017 + MER90 LTR ERV1 56 228 -386 811 250 171 0 chr9 43349633 43349849 -74512778 + MER90 LTR ERV1 361 613 -1 684 212 101 40 chr9 43351510 43351708 -74510919 + MIR SINE MIR 2 211 -51 229 245 19 0 chr9 43351811 43351864 -74510763 - MIR SINE MIR -10 252 199 309 235 281 5 chr9 43352259 43352440 -74510187 - MLT1G1 LTR MaLR -114 453 148 297 250 26 104 chr9 43352420 43352498 -74510129 - MLT1H LTR MaLR -342 213 130 * 2015 117 3 27 chr9 43352498 43352797 -74509830 + AluSc SINE Alu 1 292 -17 297 250 26 104 chr9 43352797 43352964 -74509663 - MLT1H LTR MaLR -425 130 1 2128 179 19 0 chr9 43353127 43353491 -74509136 + Tigger1 DNA MER2_type 171 541 -1877 536 213 0 0 chr9 43353491 43353585 -74509042 - FLAM_A SINE Alu -48 94 1 727 268 11 17 chr9 43353670 43353849 -74508778 + MER90 LTR ERV1 51 228 -386 798 251 172 0 chr9 43353872 43354087 -74508540 + MER90 LTR ERV1 362 613 -1 1287 179 14 57 chr9 43355499 43355796 -74506831 - L1MB7 LINE L1 -170 6014 5731 372 254 8 63 chr9 43356138 43356264 -74506363 - MER21-int LTR ERV1 -55 4136 4018 1991 177 73 12 chr9 43356269 43356800 -74505827 - L1MB7 LINE L1 -439 5739 5169 2487 136 3 35 chr9 43356800 43357175 -74505452 - THE1B LTR MaLR 0 364 2 1991 177 73 12 chr9 43357175 43357248 -74505379 - L1MB7 LINE L1 -1009 5169 5102 248 91 18 73 chr9 43357250 43357305 -74505322 + MSTD LTR MaLR 1 52 -344 3594 136 28 15 chr9 43357305 43357917 -74504710 + L1MB3 LINE L1 5536 6155 -28 2554 158 35 12 chr9 43357969 43358400 -74504227 + MLT1C LTR MaLR 27 467 0 2347 261 45 38 chr9 43358415 43359153 -74503474 - MER21-int LTR ERV1 -1021 3170 2428 6878 178 24 25 chr9 43359182 43360352 -74502275 - MSTA-int LTR MaLR -354 1297 128 2019 154 0 19 chr9 43360352 43360670 -74501957 - AluSx SINE Alu 0 312 1 6878 178 24 25 chr9 43360670 43360798 -74501829 - MSTA-int LTR MaLR -1523 128 1 1829 152 163 39 chr9 43360798 43361179 -74501448 - MSTA LTR MaLR 0 428 1 396 298 80 68 chr9 43361378 43361714 -74500913 + L1MEd LINE L1 58 397 -5722 237 130 0 0 chr9 43361826 43361872 -74500755 + LTR66 LTR ERVL 394 439 -171 * 243 109 0 0 chr9 43361850 43361896 -74500731 - LTR66 LTR ERVL -171 439 394 1753 99 14 39 chr9 43362206 43362488 -74500139 - AluY SINE Alu -8 303 29 21 0 0 0 chr9 43362598 43362619 -74500008 + AT_rich Low_complexity Low_complexity 1 21 0 2632 110 5 21 chr9 43362619 43363001 -74499626 - L1PA13 LINE L1 -11 6152 5777 440 202 56 0 chr9 43363163 43363252 -74499375 - FLAM_C SINE Alu -15 128 35 22 35 0 0 chr9 43363923 43363952 -74498675 + AT_rich Low_complexity Low_complexity 1 29 0 3049 72 5 11 chr9 43363954 43364330 -74498297 + THE1C LTR MaLR 1 374 -1 30 69 0 0 chr9 43364570 43364628 -74497999 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr9 43365233 43365255 -74497372 + AT_rich Low_complexity Low_complexity 1 22 0 3842 182 45 15 chr9 43365468 43366222 -74496405 + L1MC2 LINE L1 5559 6335 -9 218 375 17 0 chr9 43367545 43367665 -74494962 + L3b LINE CR1 1286 1407 -176 2137 106 0 0 chr9 43367888 43368170 -74494457 - AluSc SINE Alu -27 282 1 233 185 12 136 chr9 43369212 43369293 -74493334 + L2 LINE L2 3202 3272 0 497 319 34 10 chr9 43369378 43369582 -74493045 - MIR SINE MIR -1 261 53 223 267 17 0 chr9 43370234 43370294 -74492333 + L3b LINE CR1 1347 1407 -176 1462 254 63 48 chr9 43370747 43371219 -74491408 - L1MDb LINE L1 -3569 2837 2374 2253 92 3 3 chr9 43371219 43371512 -74491115 + AluSc SINE Alu 1 293 -16 1462 254 63 48 chr9 43371512 43371866 -74490761 - L1MDb LINE L1 -4032 2374 769 507 270 43 99 chr9 43372421 43372725 -74489902 + Charlie8 DNA MER1_type 203 489 -1928 240 318 55 47 chr9 43373324 43373516 -74489111 - L1ME LINE L1 -567 5554 5358 2303 110 0 0 chr9 43373516 43373824 -74488803 - AluSg SINE Alu -2 308 1 240 318 55 47 chr9 43373824 43373867 -74488760 - L1ME LINE L1 -763 5358 5317 244 273 23 45 chr9 43375182 43375270 -74487357 - L2 LINE L2 -46 3267 3182 903 188 52 96 chr9 43376011 43376240 -74486387 - MER20 DNA MER1_type 0 219 1 214 204 148 0 chr9 43377006 43377060 -74485567 + L2 LINE L2 3252 3313 0 470 234 3 1 chr9 43377430 43377547 -74485080 + L1M2 LINE L1 1640 1978 -4238 267 281 16 0 chr9 43377547 43377611 -74485016 + MER52A LTR ERV1 1 65 -1690 2357 232 152 14 chr9 43377933 43378563 -74484064 + MER52A LTR ERV1 61 777 -978 * 4719 161 40 24 chr9 43378538 43379370 -74483257 + MER52A LTR ERV1 911 1755 0 3182 239 72 40 chr9 43379370 43379959 -74482668 + L1MEc LINE L1 1743 2312 -3903 2040 129 0 16 chr9 43379959 43380269 -74482358 - AluSq SINE Alu -8 305 1 3182 239 72 40 chr9 43380269 43381087 -74481540 + L1MEc LINE L1 2312 3174 -3041 1981 140 0 3 chr9 43381087 43381372 -74481255 + AluSx SINE Alu 3 286 -26 3182 239 72 40 chr9 43381372 43381595 -74481032 + L1MEc LINE L1 3174 3388 -2827 312 143 36 0 chr9 43381592 43381648 -74480979 - L1MC3 LINE L1 -534 7251 7194 * 263 297 0 11 chr9 43381652 43381743 -74480884 - MLT1F1 LTR MaLR -442 125 36 603 157 164 0 chr9 43381746 43381880 -74480747 - L1MC3 LINE L1 -689 7096 6941 197 304 53 49 chr9 43382485 43382728 -74479899 - L2 LINE L2 -521 2793 2550 345 264 79 73 chr9 43382781 43383122 -74479505 - L2 LINE L2 -652 2662 2320 486 246 43 114 chr9 43383229 43383577 -74479050 - L1ME LINE L1 -359 5762 5435 258 235 207 18 chr9 43384147 43384285 -74478342 + MIR SINE MIR 18 144 -64 821 165 0 8 chr9 43385807 43385940 -74476687 + FLAM_C SINE Alu 2 133 0 238 256 85 66 chr9 43386073 43386300 -74476327 + L1ME LINE L1 5664 5887 -234 445 127 0 89 chr9 43386389 43386468 -74476159 - AluSx SINE Alu -13 296 225 1162 123 0 0 chr9 43386468 43386623 -74476004 - AluSx SINE Alu -155 157 3 2742 221 58 26 chr9 43386624 43388059 -74474568 + L1ME1 LINE L1 1758 3237 -3189 28 0 0 0 chr9 43388814 43388842 -74473785 + AT_rich Low_complexity Low_complexity 1 28 0 14204 181 43 46 chr9 43388843 43392475 -74470152 + L1M4c LINE L1 2005 5637 -745 2865 160 126 3 chr9 43392584 43393173 -74469454 - MER52C LTR ERV1 -617 661 1 1419 253 58 32 chr9 43393176 43393580 -74469047 + L1ME1 LINE L1 3534 3955 -2471 2307 97 0 3 chr9 43393580 43393878 -74468749 - AluSg SINE Alu -13 297 1 1419 253 58 32 chr9 43393878 43393976 -74468651 + L1ME1 LINE L1 3955 4049 -2377 2247 255 13 21 chr9 43394026 43394651 -74467976 + L1ME1 LINE L1 5836 6614 0 333 0 0 0 chr9 43395107 43395144 -74467483 + (CA)n Simple_repeat Simple_repeat 2 38 0 1700 126 4 8 chr9 43395291 43395552 -74467075 + L1MA5 LINE L1 6035 6294 -6 703 195 0 8 chr9 43396852 43396980 -74465647 + FLAM_A SINE Alu 3 129 -4 288 0 0 0 chr9 43397273 43397305 -74465322 + (TG)n Simple_repeat Simple_repeat 1 32 0 29 0 0 0 chr9 43397616 43397645 -74464982 + AT_rich Low_complexity Low_complexity 1 29 0 1921 93 7 52 chr9 43398779 43399070 -74463557 - AluSg SINE Alu -31 279 2 977 207 31 0 chr9 43400347 43400540 -74462087 + MER2 DNA MER2_type 12 210 -135 327 222 32 0 chr9 43400570 43400633 -74461994 + MER2 DNA MER2_type 281 345 0 195 129 0 0 chr9 43400978 43401009 -74461618 + (TA)n Simple_repeat Simple_repeat 1 31 0 400 293 34 87 chr9 43402373 43402473 -74460154 + MIR3 SINE MIR 6 110 -98 1964 128 173 32 chr9 43402473 43402848 -74459779 + MSTA LTR MaLR 1 428 0 9776 143 18 34 chr9 43402850 43404453 -74458174 + MSTA-int LTR MaLR 3 1578 -2 1833 141 187 45 chr9 43404455 43404778 -74457849 + MSTA LTR MaLR 1 386 -42 2088 133 0 3 chr9 43404778 43405071 -74457556 + AluSc SINE Alu 3 294 -15 1833 141 187 45 chr9 43405071 43405122 -74457505 + MSTA LTR MaLR 386 428 0 400 293 34 87 chr9 43405122 43405223 -74457404 + MIR3 SINE MIR 112 202 -6 984 205 28 28 chr9 43405351 43405673 -74456954 - L1ME3 LINE L1 -92 6070 5719 360 271 145 36 chr9 43405675 43405896 -74456731 - L1MCa LINE L1 -4277 2330 2086 192 238 0 0 chr9 43406746 43406809 -74455818 + (TA)n Simple_repeat Simple_repeat 1 63 0 27 49 0 0 chr9 43407052 43407093 -74455534 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 43407212 43407242 -74455385 + AT_rich Low_complexity Low_complexity 1 30 0 180 111 0 0 chr9 43407268 43407295 -74455332 + (CA)n Simple_repeat Simple_repeat 2 28 0 4313 70 4 25 chr9 43407842 43408282 -74454345 + L1PA8 LINE L1 5627 6054 -118 2323 88 0 0 chr9 43408282 43408578 -74454049 + AluY SINE Alu 1 296 -15 4313 70 4 25 chr9 43408578 43408695 -74453932 + L1PA8 LINE L1 6054 6172 0 2191 34 64 0 chr9 43408699 43408991 -74453636 + AluY SINE Alu 1 309 0 3417 180 25 48 chr9 43409041 43409792 -74452835 - L1 LINE L1 -864 5486 4753 * 4167 267 112 48 chr9 43409787 43410757 -74451870 - L1 LINE L1 -3579 2771 1865 2275 109 0 10 chr9 43410757 43411069 -74451558 - AluSc SINE Alu 0 309 1 4167 267 112 48 chr9 43411069 43413059 -74449568 - L1 LINE L1 -4485 1865 1 2540 227 37 50 chr9 43413059 43413235 -74449392 - L1MD3 LINE L1 -20 7975 7798 1996 146 0 0 chr9 43413235 43413529 -74449098 - AluSx SINE Alu -18 294 1 2540 227 37 50 chr9 43413529 43413980 -74448647 - L1MD3 LINE L1 -197 7798 7356 1760 192 3 0 chr9 43413980 43414272 -74448355 + AluJb SINE Alu 1 293 -19 2540 227 37 50 chr9 43414272 43414366 -74448261 - L1MD3 LINE L1 -639 7356 7262 508 238 42 37 chr9 43414363 43414552 -74448075 - L1MCa LINE L1 -4773 1653 1464 * 2091 85 3 28 chr9 43415202 43415485 -74447142 - AluY SINE Alu -7 304 29 21 0 0 0 chr9 43415594 43415615 -74447012 + AT_rich Low_complexity Low_complexity 1 21 0 2645 110 5 21 chr9 43415615 43415997 -74446630 - L1PA13 LINE L1 -11 6152 5777 500 180 56 0 chr9 43416159 43416248 -74446379 - FLAM_C SINE Alu -15 128 35 22 35 0 0 chr9 43416919 43416948 -74445679 + AT_rich Low_complexity Low_complexity 1 29 0 2906 81 24 8 chr9 43416950 43417319 -74445308 + THE1C LTR MaLR 1 375 0 243 197 4 24 chr9 43417341 43417431 -74445196 - L1MEc LINE L1 -4862 1684 1479 40 49 0 0 chr9 43417558 43417619 -74445008 + AT_rich Low_complexity Low_complexity 1 61 0 339 25 0 0 chr9 43419649 43419689 -74442938 + (CA)n Simple_repeat Simple_repeat 2 41 0 2427 46 7 20 chr9 43421570 43421874 -74440753 + AluY SINE Alu 1 300 -11 250 192 135 39 chr9 43423724 43423828 -74438799 + L1M LINE L1 5265 5378 -800 1960 122 10 55 chr9 43423830 43424142 -74438485 - AluSx SINE Alu -14 298 1 2332 105 3 3 chr9 43426377 43426690 -74435937 - AluSp SINE Alu 0 313 1 203 209 23 0 chr9 43426783 43426826 -74435801 + CT-rich Low_complexity Low_complexity 1 44 0 920 259 122 22 chr9 43427213 43427615 -74435012 + LTR16A1 LTR ERVL 16 457 0 1947 144 0 35 chr9 43427846 43428159 -74434468 - AluSx SINE Alu -10 302 1 183 359 68 19 chr9 43428219 43428322 -74434305 + L2 LINE L2 3206 3313 0 1065 228 24 62 chr9 43430079 43430368 -74432259 - MER70B LTR ERVL -297 281 4 711 270 52 26 chr9 43430374 43430604 -74432023 - L2 LINE L2 -687 2627 2392 2520 52 10 0 chr9 43430708 43431014 -74431613 + AluY SINE Alu 1 309 -2 22 0 0 0 chr9 43431165 43431187 -74431440 + AT_rich Low_complexity Low_complexity 1 22 0 668 24 24 0 chr9 43431537 43431622 -74431005 + (TTATA)n Simple_repeat Simple_repeat 4 90 0 2277 78 0 14 chr9 43431622 43431907 -74430720 - AluY SINE Alu -28 283 1 275 265 20 10 chr9 43432333 43432431 -74430196 + LTR41 LTR ERVL 3 101 -672 352 177 44 87 chr9 43432786 43432914 -74429713 - LTR48 LTR ERV1 -30 739 540 15040 131 91 13 chr9 43433019 43435533 -74427094 + L1M1 LINE L1 729 3438 -4127 236 380 38 20 chr9 43435785 43435955 -74426672 - MIR SINE MIR -75 187 7 2475 74 0 0 chr9 43436286 43436596 -74426031 - AluY SINE Alu -1 310 1 262 130 78 78 chr9 43437883 43437960 -74424667 + MER72 LTR ERV1 646 722 0 748 167 107 6 chr9 43438632 43438800 -74423827 + L1MB2 LINE L1 5986 6170 -1 256 267 114 64 chr9 43438912 43439017 -74423610 + L1M4 LINE L1 2662 2760 -3386 2258 104 0 0 chr9 43439017 43439306 -74423321 + AluSc SINE Alu 1 289 -20 256 267 114 64 chr9 43439306 43439560 -74423067 + L1M4 LINE L1 2760 3039 -3107 386 275 99 42 chr9 43439723 43440217 -74422410 + L1M4 LINE L1 4881 5402 -744 186 71 0 0 chr9 43440278 43440306 -74422321 + (TG)n Simple_repeat Simple_repeat 2 29 0 456 215 9 9 chr9 43440643 43440750 -74421877 + L1MEc LINE L1 1640 1746 -4650 277 266 16 0 chr9 43440750 43440814 -74421813 + MER52A LTR ERV1 1 65 -1690 6002 206 201 16 chr9 43441125 43442556 -74420071 + MER52A LTR ERV1 61 1755 0 3102 235 78 41 chr9 43442556 43443145 -74419482 + L1MEc LINE L1 1743 2309 -3906 2029 123 16 32 chr9 43443145 43443455 -74419172 - AluSq SINE Alu -8 305 1 3102 235 78 41 chr9 43443455 43444259 -74418368 + L1MEc LINE L1 2309 3172 -3043 2037 123 3 3 chr9 43444259 43444543 -74418084 + AluSx SINE Alu 3 286 -26 3102 235 78 41 chr9 43444543 43444769 -74417858 + L1MEc LINE L1 3172 3388 -2827 275 132 75 0 chr9 43444766 43444819 -74417808 - L1MC3 LINE L1 -534 7251 7195 * 238 320 0 10 chr9 43444819 43444916 -74417711 - MLT1F1 LTR MaLR -436 131 36 540 158 173 0 chr9 43444919 43445052 -74417575 - L1MC3 LINE L1 -689 7096 6941 211 300 53 49 chr9 43445659 43445902 -74416725 - L2 LINE L2 -521 2793 2550 342 267 79 73 chr9 43445955 43446296 -74416331 - L2 LINE L2 -652 2662 2320 469 257 40 112 chr9 43446403 43446751 -74415876 - L1ME LINE L1 -359 5762 5435 248 235 207 18 chr9 43447725 43447863 -74414764 + MIR SINE MIR 18 144 -64 821 165 0 8 chr9 43449388 43449521 -74413106 + FLAM_C SINE Alu 2 133 0 315 259 74 51 chr9 43449683 43449881 -74412746 + L1ME4a LINE L1 5689 5887 -234 2315 242 32 44 chr9 43449917 43449970 -74412657 + L1M4c LINE L1 1609 1661 -4721 2246 102 0 23 chr9 43449970 43450274 -74412353 - AluSx SINE Alu -14 298 2 2315 242 32 44 chr9 43450274 43451709 -74410918 + L1M4c LINE L1 1661 3193 -3189 21 36 0 0 chr9 43452466 43452494 -74410133 + AT_rich Low_complexity Low_complexity 1 28 0 1173 241 41 37 chr9 43452495 43452966 -74409661 + L1M4c LINE L1 2005 2486 -3896 5060 228 94 33 chr9 43453073 43454694 -74407933 - L1MCa LINE L1 -2517 3909 2117 1813 181 61 3 chr9 43454694 43455020 -74407607 + MER7A DNA MER2_type 4 346 0 5060 228 94 33 chr9 43455020 43455405 -74407222 - L1MCa LINE L1 -4309 2117 1757 4754 194 70 24 chr9 43455400 43455673 -74406954 + L1MA9 LINE L1 4123 4382 -1764 * 2107 98 36 0 chr9 43455673 43455950 -74406677 + AluY SINE Alu 1 287 -24 4754 194 70 24 chr9 43455950 43456792 -74405835 + L1MA9 LINE L1 4382 5289 -857 2228 137 39 39 chr9 43456802 43457166 -74405461 - THE1B LTR MaLR 0 364 1 11321 126 10 2 chr9 43457166 43458733 -74403894 - THE1B-int LTR MaLR 0 1580 1 2000 167 42 31 chr9 43458733 43459093 -74403534 - THE1B LTR MaLR 0 364 1 4895 148 52 27 chr9 43459093 43459533 -74403094 + L1MA9 LINE L1 5332 5760 -552 243 0 0 0 chr9 43459533 43459560 -74403067 + (CA)n Simple_repeat Simple_repeat 2 28 0 4895 148 52 27 chr9 43459560 43460076 -74402551 + L1MA9 LINE L1 5760 6312 0 1673 177 0 7 chr9 43460290 43460598 -74402029 - AluSx SINE Alu 0 306 1 491 309 56 13 chr9 43461572 43461805 -74400822 - HAL1 LINE L1 -774 1733 1491 261 309 90 5 chr9 43461824 43462012 -74400615 + HAL1 LINE L1 1490 1693 -814 2550 68 0 0 chr9 43462926 43463237 -74399390 + AluY SINE Alu 1 311 0 26 0 0 0 chr9 43463713 43463739 -74398888 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 43463836 43463867 -74398760 + AT_rich Low_complexity Low_complexity 1 31 0 323 315 112 63 chr9 43465156 43465629 -74396998 + L1MEd LINE L1 64 559 -5560 927 153 81 94 chr9 43465640 43465875 -74396752 + LTR12 LTR ERV1 3 234 -480 234 247 34 22 chr9 43465989 43466078 -74396549 + LTR30 LTR ERV1 553 642 -80 660 148 4 1 chr9 43466081 43466196 -74396431 + LTR12 LTR ERV1 73 714 0 287 62 0 107 chr9 43466518 43466630 -74395997 + (CCCCCA)n Simple_repeat Simple_repeat 5 104 0 1175 142 38 28 chr9 43467092 43467304 -74395323 + AluJo SINE Alu 1 214 -98 557 248 28 75 chr9 43467426 43467664 -74394963 - MIR SINE MIR -36 226 1 219 293 104 19 chr9 43467950 43468056 -74394571 - L2 LINE L2 0 3272 3158 2358 83 0 3 chr9 43468727 43469027 -74393600 + AluSg SINE Alu 1 299 -11 360 333 23 33 chr9 43469030 43469169 -74393458 + MIR SINE MIR 28 160 -48 572 256 221 5 chr9 43469455 43469654 -74392973 + MIR SINE MIR 14 255 -7 292 329 12 0 chr9 43470195 43470280 -74392347 - MIR3 SINE MIR -30 178 93 201 125 0 0 chr9 43470944 43470976 -74391651 - MIR SINE MIR -10 252 221 352 314 21 14 chr9 43471249 43471389 -74391238 + MIR SINE MIR 35 175 -87 438 305 40 7 chr9 43471647 43471798 -74390829 + MIR3 SINE MIR 19 174 -34 223 226 19 0 chr9 43472048 43472101 -74390526 + L3b LINE CR1 1335 1388 -195 256 219 281 0 chr9 43472697 43472793 -74389834 + L2 LINE L2 3190 3312 -1 688 270 0 27 chr9 43472809 43472994 -74389633 + MIR SINE MIR 77 256 -6 369 303 42 0 chr9 43473002 43473121 -74389506 - MIR SINE MIR -55 207 84 2420 157 7 4 chr9 43474359 43474823 -74387804 + TAR1 Satellite telomeric 1604 2068 -43 439 113 0 87 chr9 43474968 43475163 -74387464 + (TTAGGG)n Simple_repeat Simple_repeat 1 178 0 8703 226 10 36 chr9 43475219 43475959 -74386668 - L1M4 LINE L1 -927 5219 4461 1080 171 0 0 chr9 43475959 43476135 -74386492 - AluSp SINE Alu -2 311 136 8703 226 10 36 chr9 43476135 43478369 -74384258 - L1M4 LINE L1 -1685 4461 2280 388 279 27 9 chr9 43478602 43478713 -74383914 - MER5B DNA MER1_type -3 175 63 441 36 0 0 chr9 43478713 43478768 -74383859 + (TC)n Simple_repeat Simple_repeat 2 56 0 1079 237 170 74 chr9 43479363 43479852 -74382775 + MLT1F LTR MaLR 6 541 -1 32 0 0 0 chr9 43481158 43481190 -74381437 + AT_rich Low_complexity Low_complexity 1 32 0 214 365 218 19 chr9 43481588 43481744 -74380883 + MIR3 SINE MIR 16 202 -6 183 308 75 47 chr9 43482080 43482187 -74380440 - L2 LINE L2 -7 3306 3197 29 47 0 0 chr9 43483117 43483160 -74379467 + AT_rich Low_complexity Low_complexity 1 43 0 201 39 0 0 chr9 43484299 43484325 -74378302 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 194 338 0 50 chr9 43484782 43484862 -74377765 - L2 LINE L2 0 3272 3197 549 211 55 0 chr9 43485112 43485221 -74377406 - MIR3 SINE MIR -12 196 82 993 246 23 0 chr9 43485789 43486009 -74376618 - MIR SINE MIR 0 262 38 512 90 26 0 chr9 43487362 43487440 -74375187 + MADE1 DNA Mariner 1 80 0 1932 137 55 3 chr9 43487855 43488147 -74374480 + AluSx SINE Alu 1 307 -5 932 187 20 0 chr9 43488147 43488348 -74374279 + AluSg/x SINE Alu 132 335 0 2406 102 0 6 chr9 43488736 43489051 -74373576 + AluSq SINE Alu 1 313 0 3928 172 54 58 chr9 43490235 43490417 -74372210 + L1MC2 LINE L1 5224 5405 -939 1975 114 33 0 chr9 43490417 43490719 -74371908 + L1PA16 LINE L1 5842 6157 -9 3928 172 54 58 chr9 43490719 43491598 -74371029 + L1MC2 LINE L1 5405 6288 -56 2549 52 0 3 chr9 43491598 43491904 -74370723 - AluY SINE Alu -6 305 1 208 333 0 0 chr9 43493753 43493810 -74368817 - MER5A DNA MER1_type -64 125 69 327 25 0 0 chr9 43493811 43493851 -74368776 + (CA)n Simple_repeat Simple_repeat 2 41 0 1006 265 94 33 chr9 43494457 43494961 -74367666 + L2 LINE L2 2606 3148 -165 645 223 122 77 chr9 43495402 43495643 -74366984 + L1MC5 LINE L1 7349 7578 -383 2086 102 0 54 chr9 43495643 43495956 -74366671 + AluSx SINE Alu 1 296 -16 645 223 122 77 chr9 43495956 43496287 -74366340 + L1MC5 LINE L1 7578 7947 -14 1519 211 0 30 chr9 43496508 43496807 -74365820 + AluJo SINE Alu 11 300 -12 2363 74 14 0 chr9 43497005 43497302 -74365325 - AluY SINE Alu -10 301 1 22 70 0 0 chr9 43497362 43497405 -74365222 + AT_rich Low_complexity Low_complexity 1 43 0 1602 157 77 10 chr9 43497939 43498251 -74364376 + THE1C LTR MaLR 43 375 0 9920 106 36 42 chr9 43498251 43498374 -74364253 + THE1C-int LTR MaLR 1 123 -1457 2208 126 3 0 chr9 43498374 43498684 -74363943 + AluSq SINE Alu 1 311 -2 9920 106 36 42 chr9 43498684 43500148 -74362479 + THE1C-int LTR MaLR 123 1579 -1 2076 141 53 14 chr9 43500149 43500510 -74362117 + THE1C LTR MaLR 1 375 0 288 250 89 89 chr9 43500750 43500869 -74361758 + MIR SINE MIR 81 202 -60 2191 116 0 0 chr9 43500869 43501172 -74361455 - AluSc SINE Alu -6 303 1 288 250 89 89 chr9 43501172 43501232 -74361395 + MIR SINE MIR 201 260 -2 239 333 55 30 chr9 43502340 43502541 -74360086 - MER67A LTR ERV1 0 543 338 2335 70 0 7 chr9 43502587 43502886 -74359741 + AluY SINE Alu 1 297 -14 2092 124 3 0 chr9 43503310 43503601 -74359026 + AluSc SINE Alu 11 302 -7 8643 183 11 21 chr9 43503663 43504604 -74358023 + L1PA14 LINE L1 2371 3320 -2826 2023 156 7 0 chr9 43504604 43504912 -74357715 + AluSx SINE Alu 1 310 -2 8643 183 11 21 chr9 43504912 43505896 -74356731 + L1PA14 LINE L1 3320 4276 -1870 5970 112 8 7 chr9 43505897 43507651 -74354976 + L1PA14 LINE L1 4423 6161 0 4693 129 37 23 chr9 43507988 43508323 -74354304 - L1PB3 LINE L1 -5 6149 5820 2101 115 0 0 chr9 43508323 43508619 -74354008 - AluSg1 SINE Alu -13 296 1 4693 129 37 23 chr9 43508619 43508931 -74353696 - L1PB3 LINE L1 -334 5820 5484 189 0 0 0 chr9 43508931 43508952 -74353675 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 4693 129 37 23 chr9 43508952 43509204 -74353423 - L1PB3 LINE L1 -670 5484 5237 640 86 0 0 chr9 43510480 43510573 -74352054 - Alu SINE Alu 0 312 220 2034 58 36 11 chr9 43510583 43510885 -74351742 - AluY SINE Alu 0 309 1 261 316 0 0 chr9 43511874 43511950 -74350677 - MER31-int LTR ERV1 -4089 847 772 1958 170 16 32 chr9 43513293 43513735 -74348892 + MER66B LTR ERV1 52 486 0 265 277 15 15 chr9 43514704 43514769 -74347858 + MIR3 SINE MIR 14 78 -130 228 303 118 23 chr9 43515817 43516259 -74346368 - L1ME3A LINE L1 -222 5948 5465 918 201 10 19 chr9 43516583 43516792 -74345835 + Tigger6a DNA MER2_type 5 211 -872 1452 224 42 37 chr9 43516792 43517247 -74345380 - MLT1C LTR MaLR 0 467 11 * 3045 196 93 24 chr9 43517244 43517855 -74344772 + Tigger6a DNA MER2_type 220 902 -695 2115 133 0 0 chr9 43517855 43518149 -74344478 + AluY SINE Alu 1 294 -17 3045 196 93 24 chr9 43518149 43518345 -74344282 + Tigger6a DNA MER2_type 902 1083 0 1298 191 44 14 chr9 43518863 43519157 -74343470 - MER67D LTR ERV1 -108 406 104 1714 126 0 0 chr9 43519199 43519438 -74343189 - AluSc SINE Alu -70 239 1 749 193 13 52 chr9 43519438 43519699 -74342928 - MER67B LTR ERV1 -397 225 1 44 35 0 0 chr9 43520110 43520168 -74342459 + AT_rich Low_complexity Low_complexity 1 58 0 822 128 114 0 chr9 43520354 43520503 -74342124 + AluY SINE Alu 118 283 -28 1270 239 76 28 chr9 43520847 43521260 -74341367 + MER67B LTR ERV1 1 418 -243 248 53 0 0 chr9 43522298 43522336 -74340291 + AluY SINE Alu 264 301 -1 1968 137 0 0 chr9 43523172 43523449 -74339178 - AluSc SINE Alu -32 277 1 639 287 91 11 chr9 43524505 43524867 -74337760 - L1M4 LINE L1 -2042 4104 3714 255 265 138 22 chr9 43524969 43525150 -74337477 - L1M4 LINE L1 -2607 3539 3338 904 238 95 104 chr9 43525151 43525487 -74337140 - L1ME3A LINE L1 -11 6159 5821 4476 159 65 2 chr9 43525487 43526323 -74336304 - L1MC1 LINE L1 -11 6322 5435 904 238 95 104 chr9 43526323 43527013 -74335614 - L1ME3A LINE L1 -349 5821 5108 617 160 4 1 chr9 43527285 43527400 -74335227 - LTR12 LTR ERV1 0 714 73 233 247 34 22 chr9 43527403 43527492 -74335135 - LTR30 LTR ERV1 -80 642 553 861 162 81 94 chr9 43527607 43527841 -74334786 - LTR12 LTR ERV1 -481 233 3 298 304 123 68 chr9 43527852 43528322 -74334305 - L1MEd LINE L1 -5560 559 64 24 32 0 0 chr9 43529611 43529642 -74332985 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr9 43529739 43529765 -74332862 + AT_rich Low_complexity Low_complexity 1 26 0 2188 77 3 11 chr9 43530239 43530524 -74332103 - AluY SINE Alu 0 311 29 21 0 0 0 chr9 43530633 43530654 -74331973 + AT_rich Low_complexity Low_complexity 1 21 0 2577 97 5 21 chr9 43530654 43531036 -74331591 - L1PA13 LINE L1 -11 6152 5777 460 180 56 0 chr9 43531198 43531287 -74331340 - AluJb SINE Alu -184 128 35 22 35 0 0 chr9 43531962 43531991 -74330636 + AT_rich Low_complexity Low_complexity 1 29 0 2866 72 5 11 chr9 43531993 43532369 -74330258 + THE1C LTR MaLR 1 374 -1 30 69 0 0 chr9 43532609 43532667 -74329960 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr9 43533265 43533287 -74329340 + AT_rich Low_complexity Low_complexity 1 22 0 3609 175 45 13 chr9 43533504 43534257 -74328370 + L1MC2 LINE L1 5559 6335 -9 236 317 50 33 chr9 43535585 43535705 -74326922 + L3b LINE CR1 1286 1407 -176 2183 99 0 0 chr9 43535929 43536211 -74326416 - AluSc SINE Alu -27 282 1 235 185 12 136 chr9 43537253 43537334 -74325293 + L2 LINE L2 3202 3272 0 512 324 34 10 chr9 43537419 43537623 -74325004 - MIR SINE MIR -1 261 53 202 283 17 0 chr9 43538274 43538334 -74324293 + L3b LINE CR1 1347 1407 -176 315 237 11 32 chr9 43538789 43538882 -74323745 - L1MDb LINE L1 -3569 2837 2747 * 1384 249 43 62 chr9 43538879 43539263 -74323364 - L1MDb LINE L1 -4929 1477 1128 2123 107 3 3 chr9 43539263 43539554 -74323073 + AluSc SINE Alu 3 293 -16 1384 249 43 62 chr9 43539554 43539908 -74322719 - L1MDb LINE L1 -5278 1128 769 545 280 48 90 chr9 43540459 43540791 -74321836 + Charlie8 DNA MER1_type 203 520 -1897 273 324 39 39 chr9 43541368 43541550 -74321077 - L1ME LINE L1 -573 5548 5367 2278 101 3 0 chr9 43541554 43541860 -74320767 - AluSg SINE Alu -3 307 1 255 296 15 68 chr9 43543176 43543308 -74319319 - L2 LINE L2 -7 3306 3182 682 201 57 100 chr9 43544030 43544259 -74318368 - MER20 DNA MER1_type 0 219 1 393 303 113 103 chr9 43544426 43544843 -74317784 + L1MEd LINE L1 188 618 -5587 1221 106 0 0 chr9 43544843 43545023 -74317604 + (TA)n Simple_repeat Simple_repeat 1 180 0 393 303 113 103 chr9 43545023 43545373 -74317254 + L1MEd LINE L1 618 963 -5242 230 246 58 0 chr9 43545390 43545459 -74317168 + L1MEd LINE L1 973 1045 -5170 465 246 11 2 chr9 43545486 43545626 -74317001 + L1M1 LINE L1 2907 3108 -4518 2387 233 152 14 chr9 43545975 43546605 -74316022 + MER52A LTR ERV1 61 777 -978 * 4686 166 38 26 chr9 43546581 43547414 -74315213 + MER52A LTR ERV1 913 1755 0 328 281 73 73 chr9 43547414 43547688 -74314939 + L1MEd LINE L1 1743 2016 -4380 262 285 146 0 chr9 43547802 43547925 -74314702 - L1ME LINE L1 -613 5557 5417 191 326 150 18 chr9 43547943 43548170 -74314457 - L2 LINE L2 -129 3184 2928 982 206 10 19 chr9 43548217 43548426 -74314201 + Tigger6a DNA MER2_type 5 211 -872 1631 220 42 37 chr9 43548426 43548881 -74313746 - MLT1C LTR MaLR 0 467 11 * 2436 191 113 24 chr9 43548872 43549489 -74313138 + Tigger6a DNA MER2_type 216 887 -196 2365 93 0 0 chr9 43549489 43549800 -74312827 + AluY SINE Alu 1 311 0 1705 173 0 7 chr9 43551359 43551672 -74310955 + AluSx SINE Alu 1 311 0 4608 142 65 33 chr9 43551882 43552391 -74310236 - L1MA9 LINE L1 0 6312 5756 207 0 0 0 chr9 43552391 43552414 -74310213 + (TG)n Simple_repeat Simple_repeat 2 24 0 4608 142 65 33 chr9 43552414 43552854 -74309773 - L1MA9 LINE L1 -556 5756 5332 1932 156 42 31 chr9 43552854 43553214 -74309413 + THE1B LTR MaLR 1 364 0 10425 126 13 6 chr9 43553214 43554782 -74307845 + THE1B-int LTR MaLR 1 1580 0 760 95 0 0 chr9 43554782 43554877 -74307750 + THE1B LTR MaLR 1 95 -269 3003 242 38 11 chr9 43554977 43555738 -74306889 - L1MA9 LINE L1 -944 5202 4380 2135 83 36 0 chr9 43555738 43556015 -74306612 - AluY SINE Alu -24 287 1 3003 242 38 11 chr9 43556015 43556279 -74306348 - L1MA9 LINE L1 -1766 4380 4124 * 4474 228 90 27 chr9 43556275 43556660 -74305967 + L1M1 LINE L1 2917 3276 -4289 1731 181 58 0 chr9 43556660 43556986 -74305641 - MER7A DNA MER2_type 0 346 4 4474 228 90 27 chr9 43556986 43558470 -74304157 + L1M1 LINE L1 3276 4910 -2655 392 263 11 0 chr9 43558982 43559077 -74303550 - Zaphod DNA AcHobo -1 4030 3935 183 42 0 0 chr9 43559572 43559596 -74303031 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1304 227 25 108 chr9 43559812 43559843 -74302784 + MLT1D LTR MaLR 1 33 -472 2062 156 37 6 chr9 43559843 43560196 -74302431 + THE1B LTR MaLR 1 364 0 1304 227 25 108 chr9 43560196 43560449 -74302178 + MLT1D LTR MaLR 33 225 -280 1098 155 10 5 chr9 43560449 43560656 -74301971 - L1MA6 LINE L1 -6 6294 6087 1304 227 25 108 chr9 43560656 43560890 -74301737 + MLT1D LTR MaLR 225 477 -28 309 349 14 37 chr9 43561496 43561714 -74300913 - L2 LINE L2 -2248 1066 854 194 318 58 52 chr9 43561779 43561933 -74300694 - L2 LINE L2 -2570 744 590 5596 32 0 9 chr9 43563977 43564737 -74297890 + SVA Other Other 624 1384 -2 267 188 0 47 chr9 43564737 43564801 -74297826 + LTR8A LTR ERV1 567 627 -100 704 241 29 23 chr9 43564907 43565081 -74297546 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 43565282 43565327 -74297300 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 43565386 43565447 -74297180 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 43566349 43566369 -74296258 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 943 336 50 7 chr9 43566399 43566815 -74295812 + LTR16B LTR ERVL 22 455 -9 1766 168 76 8 chr9 43567878 43568360 -74294267 - L1M4 LINE L1 -480 5698 5188 1623 108 4 50 chr9 43568370 43568628 -74293999 - THE1B LTR MaLR 0 364 119 352 181 14 14 chr9 43568710 43568782 -74293845 + L1M4 LINE L1 5391 5462 -712 209 298 40 96 chr9 43568782 43568980 -74293647 - L2 LINE L2 -8 3305 3119 681 335 124 16 chr9 43569088 43569530 -74293097 - L2 LINE L2 -353 2961 2472 1656 214 106 9 chr9 43571594 43572019 -74290608 + MER31B LTR ERV1 1 466 0 1837 154 3 16 chr9 43572162 43572467 -74290160 + AluSg SINE Alu 1 301 -9 30 0 0 0 chr9 43572513 43572543 -74290084 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr9 43572794 43572820 -74289807 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr9 43573736 43573759 -74288868 + AT_rich Low_complexity Low_complexity 1 23 0 30 69 0 0 chr9 43574136 43574194 -74288433 + AT_rich Low_complexity Low_complexity 1 58 0 216 214 0 0 chr9 43574595 43574637 -74287990 + T-rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 43574703 43574724 -74287903 + AT_rich Low_complexity Low_complexity 1 21 0 207 114 0 0 chr9 43575614 43575649 -74286978 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 56 0 0 chr9 43576129 43576165 -74286462 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 43576320 43576342 -74286285 + AT_rich Low_complexity Low_complexity 1 22 0 1613 178 35 0 chr9 43576441 43576728 -74285899 - 7SLRNA srpRNA srpRNA -2 318 22 2370 155 21 16 chr9 43576971 43577397 -74285230 - MSTA LTR MaLR 0 428 1 7624 195 66 10 chr9 43577397 43578960 -74283667 - MSTA-int LTR MaLR 0 1651 1 2598 126 24 5 chr9 43578960 43579380 -74283247 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr9 43580434 43580463 -74282164 + AT_rich Low_complexity Low_complexity 1 29 0 1705 139 0 4 chr9 43581442 43581736 -74280891 - AluSx SINE Alu 0 327 35 22 0 0 0 chr9 43581820 43581842 -74280785 + AT_rich Low_complexity Low_complexity 1 22 0 480 18 0 0 chr9 43582523 43582580 -74280047 + (TCTA)n Simple_repeat Simple_repeat 1 57 0 24 53 0 0 chr9 43583088 43583126 -74279501 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr9 43583474 43583505 -74279122 + AT_rich Low_complexity Low_complexity 1 31 0 2586 30 0 0 chr9 43583652 43583954 -74278673 - AluY SINE Alu -9 302 1 50 31 0 0 chr9 43584453 43584517 -74278110 + AT_rich Low_complexity Low_complexity 1 64 0 687 267 106 45 chr9 43584900 43585244 -74277383 + L1M4 LINE L1 2948 3270 -2876 2028 140 0 0 chr9 43585244 43585552 -74277075 + AluSx SINE Alu 1 308 -4 687 267 106 45 chr9 43585552 43585848 -74276779 + L1M4 LINE L1 3270 3627 -2519 5907 19 0 0 chr9 43585997 43586675 -74275952 - L1PA2 LINE L1 -89 6066 5389 3675 40 0 0 chr9 43586675 43587122 -74275505 + L1P LINE L1 3557 4003 -2143 461 234 18 42 chr9 43587109 43587276 -74275351 + L1M4 LINE L1 3601 3763 -2383 * 180 179 0 0 chr9 43587281 43587320 -74275307 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 283 33 0 chr9 43587615 43587707 -74274920 + CT-rich Low_complexity Low_complexity 6 100 0 1519 264 43 48 chr9 43587721 43588389 -74274238 - L1M4 LINE L1 -1909 4237 3573 554 228 134 35 chr9 43590138 43590340 -74272287 + MER77 LTR ERV1 4 225 -380 1224 280 56 30 chr9 43590360 43590788 -74271839 + MER77 LTR ERV1 161 599 -6 488 327 79 25 chr9 43590838 43591205 -74271422 - L1MEc LINE L1 -4574 1822 1436 284 357 75 9 chr9 43591239 43591452 -74271175 - L2 LINE L2 -4 3309 3083 317 332 71 37 chr9 43591828 43592153 -74270474 - L1MEc LINE L1 -5284 921 586 1663 63 18 0 chr9 43592166 43592387 -74270240 - L1PA8 LINE L1 0 6172 5948 4284 79 18 20 chr9 43592387 43592995 -74269632 - L1PA7 LINE L1 -42 6112 5506 2379 74 0 7 chr9 43593273 43593583 -74269044 + AluY SINE Alu 1 308 -3 25 0 0 0 chr9 43594849 43594874 -74267753 + AT_rich Low_complexity Low_complexity 1 25 0 1018 271 77 6 chr9 43595251 43595591 -74267036 + MLT1A1 LTR MaLR 1 364 -1 188 292 79 22 chr9 43596666 43596755 -74265872 - L2 LINE L2 -4 3268 3175 1352 204 60 27 chr9 43597203 43597536 -74265091 - MER2 DNA MER2_type 0 344 1 569 216 175 6 chr9 43597883 43598054 -74264573 + MLT1A1 LTR MaLR 1 200 -165 435 116 3 5 chr9 43598048 43598125 -74264502 + MLT1A1 LTR MaLR 289 390 0 * 703 325 13 10 chr9 43598339 43598653 -74263974 + L1MEc LINE L1 486 800 -5596 365 269 108 24 chr9 43598694 43598991 -74263636 + L1MEc LINE L1 933 1254 -5142 322 267 67 13 chr9 43599108 43599204 -74263423 + HAL1 LINE L1 1389 1497 -1010 189 0 0 0 chr9 43599204 43599225 -74263402 + (CA)n Simple_repeat Simple_repeat 2 22 0 322 267 67 13 chr9 43599225 43599278 -74263349 + HAL1 LINE L1 1497 1546 -961 23 0 0 0 chr9 43599279 43599302 -74263325 + AT_rich Low_complexity Low_complexity 1 23 0 426 299 22 76 chr9 43599388 43599572 -74263055 + MER96 DNA MER1_type? 2 175 0 345 244 0 0 chr9 43599696 43599778 -74262849 + L1MEc LINE L1 1985 2066 -4330 397 247 69 53 chr9 43599816 43600063 -74262564 + L1MEc LINE L1 2047 2297 -4099 316 280 24 16 chr9 43600123 43600248 -74262379 + L1MEc LINE L1 2370 2495 -3720 454 227 91 8 chr9 43600265 43600397 -74262230 + L1MA3 LINE L1 6163 6305 0 572 198 0 16 chr9 43600508 43600629 -74261998 + MLT1A1 LTR MaLR 1 119 -246 1012 207 11 0 chr9 43600675 43600854 -74261773 + MLT1A1 LTR MaLR 122 302 -63 28 0 0 0 chr9 43600866 43600894 -74261733 + AT_rich Low_complexity Low_complexity 1 28 0 682 278 73 25 chr9 43600955 43601519 -74261108 + L1MEc LINE L1 3190 3780 -2435 282 281 95 29 chr9 43601526 43601736 -74260891 + L1MEc LINE L1 3952 4175 -2040 579 259 20 10 chr9 43601750 43601951 -74260676 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr9 43601953 43601990 -74260637 + AT_rich Low_complexity Low_complexity 1 37 0 1074 279 89 34 chr9 43602016 43602782 -74259845 + L1M4 LINE L1 2269 3076 -3070 1405 214 15 35 chr9 43602882 43603224 -74259403 + LTR22A LTR ERVK 124 458 0 756 31 20 0 chr9 43603224 43603322 -74259305 - L1P LINE L1 -766 5406 5307 3506 72 8 6 chr9 43603322 43603795 -74258832 + L1PA7 LINE L1 5680 6154 0 186 250 33 50 chr9 43603840 43603900 -74258727 - L2 LINE L2 -873 2441 2383 416 261 49 49 chr9 43603901 43604085 -74258542 - L2 LINE L2 -906 2408 2225 2405 68 0 3 chr9 43605318 43605625 -74257002 - AluY SINE Alu -5 306 1 29 47 0 0 chr9 43605696 43605739 -74256888 + AT_rich Low_complexity Low_complexity 1 43 0 1191 221 74 34 chr9 43606092 43606445 -74256182 + MLT1A2 LTR MaLR 4 370 -4 293 260 55 0 chr9 43608290 43608363 -74254264 + L1ME4a LINE L1 5976 6052 -69 656 212 0 14 chr9 43608420 43608566 -74254061 - AluJb SINE Alu -6 306 163 338 216 108 7 chr9 43608566 43608705 -74253922 + L1M1 LINE L1 3305 3457 -4108 302 282 24 0 chr9 43608821 43608906 -74253721 - MER20 DNA MER1_type -132 87 1 285 257 71 44 chr9 43609392 43609505 -74253122 - MIR3 SINE MIR -26 182 67 351 0 0 0 chr9 43609936 43609975 -74252652 + (TG)n Simple_repeat Simple_repeat 2 40 0 413 284 43 0 chr9 43610308 43610417 -74252210 + MLT1J LTR MaLR 26 139 -372 1338 164 62 54 chr9 43610417 43610770 -74251857 + THE1C LTR MaLR 1 356 -19 316 207 24 24 chr9 43612811 43612893 -74249734 + THE1C LTR MaLR 1 82 -293 936 176 0 0 chr9 43613256 43613415 -74249212 - AluY SINE Alu -152 159 1 784 197 0 0 chr9 43613674 43613821 -74248806 - AluSg/x SINE Alu -5 307 161 725 311 36 26 chr9 43613826 43614241 -74248386 - L1ME2 LINE L1 -191 5973 5555 2148 83 0 30 chr9 43614242 43614544 -74248083 - AluY SINE Alu -18 293 1 307 315 59 88 chr9 43614602 43614875 -74247752 + L1MEd LINE L1 364 628 -5491 261 208 0 0 chr9 43614890 43614938 -74247689 - MER58 DNA MER1_type -15 2405 2358 303 311 57 6 chr9 43614940 43615117 -74247510 + L1MEd LINE L1 965 1150 -4969 21 0 0 0 chr9 43616567 43616588 -74246039 + AT_rich Low_complexity Low_complexity 1 21 0 418 262 83 21 chr9 43616968 43617203 -74245424 - MER102b DNA MER1_type -1 340 81 201 218 0 58 chr9 43617880 43617967 -74244660 + A-rich Low_complexity Low_complexity 4 85 0 21 0 0 0 chr9 43619559 43619580 -74243047 + AT_rich Low_complexity Low_complexity 1 21 0 2955 179 89 14 chr9 43619625 43619762 -74242865 - L1MA6 LINE L1 -367 5933 5808 601 13 26 0 chr9 43619762 43619840 -74242787 + (TAGA)n Simple_repeat Simple_repeat 3 82 0 2955 179 89 14 chr9 43619840 43620421 -74242206 - L1MA6 LINE L1 -492 5808 5183 2266 83 0 3 chr9 43620857 43621146 -74241481 + AluSx SINE Alu 1 288 -24 1570 211 112 36 chr9 43621172 43621670 -74240957 - L1ME2 LINE L1 -58 6106 5571 585 225 136 9 chr9 43621667 43621884 -74240743 - L1MEc LINE L1 -841 2461 2175 * 251 226 75 32 chr9 43621901 43621994 -74240633 - L1MEc LINE L1 -5451 972 876 913 70 0 0 chr9 43622003 43622118 -74240509 - AluY SINE Alu -13 298 184 232 312 52 0 chr9 43622819 43622896 -74239731 + L2 LINE L2 3231 3311 -2 2147 104 38 41 chr9 43624244 43624609 -74238018 + THE1B LTR MaLR 1 364 0 376 128 186 23 chr9 43624609 43624695 -74237932 + THE1B-int LTR MaLR 1 100 -1480 1348 109 0 5 chr9 43626112 43626296 -74236331 - AluSq SINE Alu -103 210 28 317 177 0 32 chr9 43626296 43626358 -74236269 - AluJo SINE Alu -159 143 84 427 211 13 0 chr9 43626373 43626449 -74236178 + MER2 DNA MER2_type 268 344 -1 1499 153 136 0 chr9 43626852 43627160 -74235467 - L1MB3 LINE L1 -2 6181 5832 293 173 49 12 chr9 43627168 43627249 -74235378 + MER20B DNA MER1_type 602 685 -98 242 157 39 0 chr9 43627286 43627337 -74235290 + MER20B DNA MER1_type 674 726 -57 256 272 12 37 chr9 43627919 43628000 -74234627 + MLT1F LTR MaLR 51 129 -413 341 303 138 24 chr9 43628000 43628424 -74234203 - L1MB3 LINE L1 -390 5731 5258 437 32 0 16 chr9 43628878 43628941 -74233686 - Harlequin LTR ERV1 -5263 1633 1572 * 4933 54 10 3 chr9 43628934 43629562 -74233065 - Harlequin LTR ERV1 -6003 893 262 2639 98 5 0 chr9 43629557 43629935 -74232692 - Harlequin LTR ERV1 -6516 380 1 * 396 62 0 0 chr9 43629935 43629983 -74232644 - LTR2B LTR ERV1 0 490 443 10573 72 0 6 chr9 43630083 43631479 -74231148 + L1P LINE L1 19 1406 -4740 797 214 41 38 chr9 43631987 43632254 -74230373 + L1MC4 LINE L1 7775 8042 0 209 257 20 20 chr9 43632441 43632542 -74230085 + (TA)n Simple_repeat Simple_repeat 1 101 0 916 133 0 0 chr9 43632906 43633041 -74229586 + L1P3 LINE L1 10 144 -6317 1088 208 10 0 chr9 43633943 43634150 -74228477 + MER2 DNA MER2_type 1 209 -136 659 317 45 8 chr9 43634616 43634859 -74227768 - MIR SINE MIR -3 259 8 1643 142 0 4 chr9 43635419 43635680 -74226947 - L1PA15 LINE L1 -4 6161 5902 315 191 0 0 chr9 43635853 43635916 -74226711 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 189 0 0 0 chr9 43636016 43636037 -74226590 + (TA)n Simple_repeat Simple_repeat 2 22 0 1961 201 41 35 chr9 43636675 43637137 -74225490 + MLT1C LTR MaLR 3 467 0 279 0 0 0 chr9 43637524 43637555 -74225072 + (TG)n Simple_repeat Simple_repeat 1 31 0 1234 210 159 42 chr9 43638746 43639155 -74223472 - MSTB2 LTR MaLR 0 457 1 388 319 32 51 chr9 43642029 43642186 -74220441 - L2 LINE L2 -192 3080 2927 256 277 69 0 chr9 43642397 43642498 -74220129 + MER103 DNA DNA 59 166 0 727 211 57 113 chr9 43642704 43643111 -74219516 + MLT1B LTR MaLR 7 390 0 441 285 90 77 chr9 43643244 43643717 -74218910 + MLT1G1 LTR MaLR 82 594 -1 225 0 0 0 chr9 43644458 43644483 -74218144 + (CA)n Simple_repeat Simple_repeat 1 25 0 189 270 0 0 chr9 43644911 43645000 -74217627 + CT-rich Low_complexity Low_complexity 3 91 0 200 280 0 0 chr9 43645094 43645144 -74217483 + CT-rich Low_complexity Low_complexity 3 52 0 3363 241 146 32 chr9 43646685 43648002 -74214625 + L1MDa LINE L1 580 2022 -4518 418 242 108 0 chr9 43648208 43648365 -74214262 + L1MDa LINE L1 2120 2293 -4247 * 581 237 163 6 chr9 43648352 43648584 -74214043 + L1MD2 LINE L1 6061 7773 -12 347 0 23 0 chr9 43650291 43650334 -74212293 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 2428 62 0 0 chr9 43650930 43651234 -74211393 + AluY SINE Alu 1 304 -7 24 0 0 0 chr9 43651467 43651491 -74211136 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr9 43651771 43651800 -74210827 + AT_rich Low_complexity Low_complexity 1 29 0 744 296 84 12 chr9 43651834 43652155 -74210472 - MER115 DNA AcHobo 0 693 350 470 351 44 18 chr9 43654621 43654849 -74207778 - MIR SINE MIR -26 236 3 262 225 18 27 chr9 43655538 43655649 -74206978 + (TTTA)n Simple_repeat Simple_repeat 3 112 0 5143 85 11 14 chr9 43655649 43656224 -74206403 - L1PA7 LINE L1 -148 6006 5431 2768 39 6 0 chr9 43656224 43656561 -74206066 - L1PA4 LINE L1 -2 6153 5815 5143 85 11 14 chr9 43656561 43657251 -74205376 - L1PA7 LINE L1 -723 5431 4743 * 8694 108 10 2 chr9 43657247 43657366 -74205261 + L1P LINE L1 2323 2440 -3706 324 0 0 0 chr9 43657366 43657402 -74205225 + (TA)n Simple_repeat Simple_repeat 1 36 0 8694 108 10 2 chr9 43657402 43658601 -74204026 + L1P LINE L1 2440 3651 -2495 2177 118 0 3 chr9 43658927 43659232 -74203395 - AluSg SINE Alu -6 304 1 257 312 128 0 chr9 43659380 43659489 -74203138 - L1ME LINE L1 -525 5639 5517 22 35 0 0 chr9 43659492 43659521 -74203106 + AT_rich Low_complexity Low_complexity 1 29 0 723 194 18 48 chr9 43659720 43659885 -74202742 - AluJo SINE Alu -144 168 9 338 298 29 0 chr9 43660384 43660488 -74202139 + L2 LINE L2 3191 3297 -16 253 318 54 61 chr9 43661046 43661194 -74201433 + MIR SINE MIR 61 207 -55 23 0 0 0 chr9 43661477 43661500 -74201127 + AT_rich Low_complexity Low_complexity 1 23 0 230 286 223 0 chr9 43663856 43663968 -74198659 - L2 LINE L2 0 3313 3177 306 243 14 0 chr9 43664145 43664215 -74198412 - MER69 DNA AcHobo -1 2525 2455 1485 204 7 4 chr9 43664946 43665225 -74197402 + AluJo SINE Alu 1 280 -32 211 27 27 27 chr9 43665225 43665262 -74197365 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 245 277 12 24 chr9 43665457 43665540 -74197087 - L1ME3A LINE L1 -48 6122 6041 189 0 0 0 chr9 43665616 43665637 -74196990 + (T)n Simple_repeat Simple_repeat 1 21 0 5103 33 2 0 chr9 43665666 43666273 -74196354 - L1PA3 LINE L1 -1 6154 5547 2212 103 0 3 chr9 43666362 43666653 -74195974 - AluSq SINE Alu -23 290 1 605 237 103 47 chr9 43666653 43666885 -74195742 - L1MC4 LINE L1 -5 8037 7793 471 298 122 50 chr9 43668032 43668535 -74194092 - L1MC4a LINE L1 -1895 5913 5357 1846 91 18 100 chr9 43668535 43668874 -74193753 - AluYb8 SINE Alu 0 318 8 471 298 122 50 chr9 43668874 43668985 -74193642 - L1MC4a LINE L1 -2451 5357 5255 269 132 0 0 chr9 43669046 43669084 -74193543 - U2 snRNA snRNA -149 39 2 280 321 61 20 chr9 43669763 43669959 -74192668 - MLT1L LTR MaLR -42 573 370 226 190 25 76 chr9 43670306 43670385 -74192242 - MLT1L LTR MaLR -532 83 9 1706 195 39 23 chr9 43671194 43671578 -74191049 + MLT1B LTR MaLR 1 390 0 24 32 0 0 chr9 43672461 43672492 -74190135 + AT_rich Low_complexity Low_complexity 1 31 0 203 343 60 30 chr9 43672494 43672695 -74189932 - L3b LINE CR1 -140 1443 1237 2022 137 76 15 chr9 43672988 43673331 -74189296 - THE1B LTR MaLR 0 364 1 7535 148 27 33 chr9 43673336 43674501 -74188126 - THE1B-int LTR MaLR -6 1574 408 1087 114 19 13 chr9 43674501 43674659 -74187968 - AluSg/x SINE Alu -20 292 134 7535 148 27 33 chr9 43674659 43675063 -74187564 - THE1B-int LTR MaLR -1172 408 3 1940 126 89 15 chr9 43675065 43675391 -74187236 - THE1B LTR MaLR 0 364 15 216 86 0 0 chr9 43675880 43675915 -74186712 + (T)n Simple_repeat Simple_repeat 1 35 0 234 336 29 39 chr9 43676257 43676361 -74186266 + MIR3 SINE MIR 67 169 -39 28 48 0 0 chr9 43679567 43679609 -74183018 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr9 43680636 43680659 -74181968 + AT_rich Low_complexity Low_complexity 1 23 0 247 356 26 9 chr9 43681097 43681212 -74181415 - L2 LINE L2 -936 2378 2262 663 243 28 23 chr9 43681339 43681516 -74181111 - MER5B DNA MER1_type 0 178 1 477 261 39 78 chr9 43681534 43681653 -74180974 + MER5B DNA MER1_type 3 114 -64 2009 123 0 32 chr9 43681653 43681962 -74180665 - AluSx SINE Alu -13 299 1 477 261 39 78 chr9 43681962 43682022 -74180605 + MER5B DNA MER1_type 114 175 -3 2430 41 0 53 chr9 43682123 43682443 -74180184 - AluY SINE Alu -8 303 1 186 273 0 0 chr9 43682889 43682933 -74179694 + MER5B DNA MER1_type 1 44 -134 2320 43 3 3 chr9 43682933 43683215 -74179412 + AluY SINE Alu 1 282 -29 457 198 10 0 chr9 43683358 43683454 -74179173 + MSTA LTR MaLR 1 97 -331 601 258 158 39 chr9 43683559 43683838 -74178789 - THE1-int LTR MaLR -362 1218 907 951 194 94 21 chr9 43683842 43684130 -74178497 + MSTA LTR MaLR 66 374 -54 385 180 38 3 chr9 43684160 43684261 -74178366 - MST-int LTR MaLR -972 661 506 5318 224 54 27 chr9 43684364 43685892 -74176735 + MSTA-int LTR MaLR 15 1583 -68 351 180 0 0 chr9 43685964 43686025 -74176602 - MSTA LTR MaLR -51 377 317 267 179 39 39 chr9 43686027 43686105 -74176522 + MSTA-int LTR MaLR 1574 1651 0 228 281 42 0 chr9 43686105 43686201 -74176426 + MSTA LTR MaLR 1 100 -328 312 233 117 10 chr9 43686246 43686349 -74176278 + MSTA LTR MaLR 58 171 -257 1230 210 15 52 chr9 43686352 43686695 -74175932 + MSTA-int LTR MaLR 1322 1651 0 526 156 10 0 chr9 43686695 43686791 -74175836 + MSTA LTR MaLR 1 97 -331 249 196 18 0 chr9 43686887 43686943 -74175684 + THE1-int LTR MaLR 911 967 -613 * 651 200 234 21 chr9 43686931 43687166 -74175461 - THE1-int LTR MaLR -389 1191 907 894 258 52 11 chr9 43687191 43687459 -74175168 + MSTA LTR MaLR 96 374 -54 299 239 196 7 chr9 43687488 43687626 -74175001 - MST-int LTR MaLR -981 670 507 278 197 15 0 chr9 43687632 43687698 -74174929 + MSTA-int LTR MaLR 36 102 -1549 708 233 79 65 chr9 43687820 43688112 -74174515 + MSTA LTR MaLR 75 372 -56 503 199 153 10 chr9 43688132 43688286 -74174341 - MST-int LTR MaLR -963 661 463 * 5432 236 49 20 chr9 43688281 43689859 -74172768 + MSTA-int LTR MaLR 28 1651 0 394 237 21 0 chr9 43689859 43689956 -74172671 + MSTA LTR MaLR 1 99 -329 280 267 109 0 chr9 43690005 43690106 -74172521 + MSTA LTR MaLR 60 171 -257 1181 213 30 42 chr9 43690111 43690444 -74172183 + MST-int LTR MaLR 1323 1651 0 314 191 32 0 chr9 43690444 43690507 -74172120 + MSTA LTR MaLR 1 65 -363 496 242 200 29 chr9 43690668 43690908 -74171719 - MST-int LTR MaLR -395 1256 976 547 250 49 11 chr9 43690913 43691097 -74171530 + MSTA LTR MaLR 76 266 -162 306 301 37 7 chr9 43691101 43691237 -74171390 - THE1-int LTR MaLR -975 605 466 * 5163 239 55 24 chr9 43691234 43692810 -74169817 + MST-int LTR MaLR 27 1651 0 383 189 28 38 chr9 43692810 43692916 -74169711 + MSTA LTR MaLR 1 105 -323 324 231 0 0 chr9 43693033 43693098 -74169529 + MSTA LTR MaLR 95 159 -269 1257 217 18 39 chr9 43693108 43693444 -74169183 + MSTA-int LTR MaLR 1321 1649 -2 440 198 10 0 chr9 43693446 43693542 -74169085 + MSTA LTR MaLR 1 97 -331 249 196 18 0 chr9 43693638 43693694 -74168933 + THE1-int LTR MaLR 911 967 -613 * 610 245 191 21 chr9 43693685 43693926 -74168701 - THE1-int LTR MaLR -392 1188 907 960 191 94 21 chr9 43693930 43694218 -74168409 + MSTA LTR MaLR 66 374 -54 306 208 14 5 chr9 43694254 43694349 -74168278 - MST-int LTR MaLR -990 661 506 5690 215 50 29 chr9 43694474 43696065 -74166562 + MSTA-int LTR MaLR 28 1651 0 394 237 21 0 chr9 43696065 43696162 -74166465 + MSTA LTR MaLR 1 99 -329 257 280 120 0 chr9 43696211 43696311 -74166316 + MSTA LTR MaLR 60 171 -257 1122 222 30 42 chr9 43696316 43696649 -74165978 + MSTA-int LTR MaLR 1323 1651 0 314 191 32 0 chr9 43696649 43696712 -74165915 + MSTA LTR MaLR 1 65 -363 2152 130 0 0 chr9 43697375 43697675 -74164952 - AluSx SINE Alu -9 303 4 24 0 0 0 chr9 43697747 43697771 -74164856 + AT_rich Low_complexity Low_complexity 1 24 0 206 318 75 75 chr9 43698126 43698378 -74164249 - L2 LINE L2 -934 2380 2129 23 0 0 0 chr9 43698593 43698616 -74164011 + AT_rich Low_complexity Low_complexity 1 23 0 237 242 0 32 chr9 43698958 43699020 -74163607 + CT-rich Low_complexity Low_complexity 2 61 0 308 358 80 16 chr9 43701124 43701311 -74161316 + L2 LINE L2 2574 2772 -542 1400 137 4 31 chr9 43701394 43701650 -74160977 - L1PA13 LINE L1 -2 6161 5913 244 242 16 0 chr9 43702147 43702159 -74160468 + MER3 DNA MER1_type 37 49 -160 326 141 0 77 chr9 43702159 43702237 -74160390 - MER3 DNA MER1_type -1 208 137 2135 95 7 16 chr9 43702487 43702791 -74159836 - AluSc SINE Alu -8 301 1 21 0 0 0 chr9 43705507 43705528 -74157099 + AT_rich Low_complexity Low_complexity 1 21 0 235 298 12 48 chr9 43706161 43706245 -74156382 - L3 LINE CR1 -254 1323 1243 393 271 0 0 chr9 43706362 43706458 -74156169 - MER20 DNA MER1_type -5 214 119 28 48 0 0 chr9 43708956 43708998 -74153629 + AT_rich Low_complexity Low_complexity 1 42 0 1425 144 9 9 chr9 43709252 43709481 -74153146 - MER30 DNA MER1_type -1 229 1 438 250 103 7 chr9 43709685 43709821 -74152806 - MER45C DNA AcHobo -94 859 711 918 254 70 0 chr9 43709889 43710102 -74152525 - MER45C DNA AcHobo -721 232 5 795 338 11 3 chr9 43710461 43710745 -74151882 + MLT2E LTR ERVL 93 378 -250 471 255 12 19 chr9 43710776 43710937 -74151690 + MLT2E LTR ERVL 469 628 0 1197 269 11 4 chr9 43711826 43712290 -74150337 - L1M4 LINE L1 -2536 3610 3144 33 0 0 0 chr9 43712364 43712397 -74150230 + AT_rich Low_complexity Low_complexity 1 33 0 2040 263 65 93 chr9 43712843 43714142 -74148485 + L1MCc LINE L1 11 1273 -5150 24 85 0 0 chr9 43714798 43714857 -74147770 + AT_rich Low_complexity Low_complexity 1 59 0 2325 97 13 0 chr9 43715898 43716207 -74146420 + AluSq SINE Alu 1 313 0 361 285 167 11 chr9 43716215 43716401 -74146226 + L1MCc LINE L1 2056 2270 -4852 363 345 32 18 chr9 43716408 43716628 -74145999 + L1MCc LINE L1 2321 2543 -4579 22 0 0 0 chr9 43716658 43716680 -74145947 + AT_rich Low_complexity Low_complexity 1 22 0 381 298 98 58 chr9 43717034 43717681 -74144946 + L1MCc LINE L1 3041 3661 -3280 2483 48 3 6 chr9 43717681 43717992 -74144635 + AluY SINE Alu 1 310 -1 381 298 98 58 chr9 43717992 43718044 -74144583 + L1MCc LINE L1 3661 3709 -3232 1082 147 25 0 chr9 43718044 43718242 -74144385 + L1PB3 LINE L1 5942 6144 -10 381 298 98 58 chr9 43718242 43719692 -74142935 + L1MCc LINE L1 3709 5277 -1664 5778 144 6 24 chr9 43720221 43721364 -74141263 - L1PB1 LINE L1 -6 6145 4983 210 71 0 0 chr9 43721364 43721392 -74141235 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 5778 144 6 24 chr9 43721392 43721408 -74141219 - L1PB1 LINE L1 -1168 4983 4968 1796 139 15 7 chr9 43721408 43721682 -74140945 - AluSx SINE Alu -36 276 1 5778 144 6 24 chr9 43721682 43721883 -74140744 - L1PB1 LINE L1 -1183 4968 4815 410 273 8 30 chr9 43722026 43722158 -74140469 + L1M4 LINE L1 2673 2801 -3345 1672 62 0 0 chr9 43722607 43722801 -74139826 - AluY SINE Alu -116 195 2 661 95 0 0 chr9 43722802 43722897 -74139730 + AluY SINE Alu 215 309 -2 2000 119 3 17 chr9 43724214 43724509 -74138118 + AluSg SINE Alu 1 291 -19 1204 287 21 9 chr9 43725392 43725726 -74136901 - MLT1E2 LTR MaLR -66 560 223 5216 139 1 15 chr9 43725752 43727365 -74135262 - L1PA15 LINE L1 0 6165 4550 9288 221 11 39 chr9 43727366 43728603 -74134024 - L1PA15 LINE L1 -2171 3975 2844 3109 52 0 0 chr9 43728603 43728988 -74133639 - L1PA3 LINE L1 0 6155 5771 9288 221 11 39 chr9 43728988 43730268 -74132359 - L1PA15 LINE L1 -3302 2844 1529 5587 215 27 31 chr9 43730273 43731392 -74131235 + L1PA12 LINE L1 1543 2657 -4924 1955 146 50 14 chr9 43731392 43731754 -74130873 - THE1C LTR MaLR 0 375 1 5587 215 27 31 chr9 43731754 43731971 -74130656 + L1PA12 LINE L1 2657 2873 -4708 417 191 101 96 chr9 43731971 43732149 -74130478 - MLT1E1 LTR MaLR -397 257 1 5907 174 58 2 chr9 43733340 43734482 -74128145 - Tigger3b DNA MER2_type -25 1206 1 1079 194 132 32 chr9 43735549 43735876 -74126751 + MLT1A1 LTR MaLR 5 365 0 25 51 0 0 chr9 43736127 43736166 -74126461 + AT_rich Low_complexity Low_complexity 1 39 0 1789 156 46 48 chr9 43736302 43736674 -74125953 + THE1C LTR MaLR 4 374 -1 217 208 52 0 chr9 43736852 43736929 -74125698 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 2302 36 0 7 chr9 43738760 43739036 -74123591 - AluY SINE Alu -12 299 26 789 239 66 30 chr9 43739115 43739420 -74123207 - L1MCa LINE L1 -3950 2476 2161 1471 225 48 22 chr9 43739455 43739811 -74122816 + MLT1A1 LTR MaLR 1 365 0 1363 192 35 61 chr9 43739883 43740182 -74122445 - L1MCa LINE L1 -4421 2005 1700 1840 110 8 12 chr9 43740182 43740437 -74122190 + AluY SINE Alu 3 256 -55 1363 192 35 61 chr9 43740437 43740815 -74121812 - L1MCa LINE L1 -4726 1700 1259 233 104 62 0 chr9 43740841 43740889 -74121738 + A-rich Low_complexity Low_complexity 3 53 0 366 156 0 0 chr9 43741132 43741196 -74121431 + (TA)n Simple_repeat Simple_repeat 1 64 0 2531 166 22 41 chr9 43741512 43742064 -74120563 + L1MC2 LINE L1 5647 6186 -158 22 35 0 0 chr9 43742072 43742101 -74120526 + AT_rich Low_complexity Low_complexity 1 29 0 1213 258 127 19 chr9 43742697 43743116 -74119511 + MLT1C LTR MaLR 4 467 0 254 335 68 12 chr9 43743153 43743314 -74119313 + L2 LINE L2 3104 3273 -40 357 339 8 0 chr9 43743825 43743946 -74118681 - LTR33 LTR ERVL -323 198 77 2436 196 37 33 chr9 43744506 43745079 -74117548 + Tigger3b DNA MER2_type 1 575 -656 260 178 14 0 chr9 43745593 43745666 -74116961 + (TG)n Simple_repeat Simple_repeat 2 75 0 507 263 100 0 chr9 43746729 43746889 -74115738 - MER67D LTR ERV1 -114 400 225 32 0 0 0 chr9 43746900 43746932 -74115695 + AT_rich Low_complexity Low_complexity 1 32 0 1988 130 3 3 chr9 43747164 43747471 -74115156 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr9 43747733 43747754 -74114873 + AT_rich Low_complexity Low_complexity 1 21 0 2295 167 20 18 chr9 43748392 43748834 -74113793 - L1MA5 LINE L1 -236 6064 5622 211 176 0 78 chr9 43749235 43749286 -74113341 + L2 LINE L2 3267 3313 0 285 241 84 0 chr9 43749830 43749932 -74112695 + HsTC2 DNA Tc2 615 1896 -2 22 70 0 0 chr9 43750191 43750234 -74112393 + AT_rich Low_complexity Low_complexity 1 43 0 387 319 49 32 chr9 43751210 43751395 -74111232 + MIR3 SINE MIR 5 192 -16 235 64 21 21 chr9 43752763 43752810 -74109817 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 643 243 14 0 chr9 43754154 43754302 -74108325 + MIR SINE MIR 113 262 0 560 302 138 9 chr9 43754408 43754633 -74107994 + MIR SINE MIR 1 254 -8 183 376 43 11 chr9 43755303 43755396 -74107231 + MER5A DNA MER1_type 72 167 -22 23 78 0 0 chr9 43756560 43756611 -74106016 + AT_rich Low_complexity Low_complexity 1 51 0 1983 109 7 0 chr9 43758733 43759007 -74103620 - AluSx SINE Alu -20 292 17 2427 77 0 13 chr9 43759143 43759456 -74103171 - AluSg1 SINE Alu 0 309 1 288 175 0 0 chr9 43759577 43759640 -74102987 + (TG)n Simple_repeat Simple_repeat 1 63 0 1929 136 7 3 chr9 43761477 43761786 -74100841 - AluSx SINE Alu 0 312 3 37 0 0 0 chr9 43762015 43762052 -74100575 + AT_rich Low_complexity Low_complexity 1 37 0 507 263 100 0 chr9 43762063 43762223 -74100404 + MER67D LTR ERV1 225 400 -114 281 164 14 0 chr9 43763291 43763364 -74099263 + (CA)n Simple_repeat Simple_repeat 2 75 0 354 331 85 36 chr9 43764985 43765348 -74097279 + L2 LINE L2 2460 2840 -474 2314 93 0 29 chr9 43765475 43765787 -74096840 - AluY SINE Alu -8 303 1 24 77 0 0 chr9 43765895 43765947 -74096680 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr9 43766514 43766537 -74096090 + AT_rich Low_complexity Low_complexity 1 23 0 230 233 0 0 chr9 43766564 43766607 -74096020 + (CA)n Simple_repeat Simple_repeat 2 44 0 6048 122 21 27 chr9 43767200 43768173 -74094454 - LTR5 LTR ERVK -2 967 1 338 283 66 30 chr9 43768763 43768929 -74093698 + L1MCc LINE L1 17 188 -6235 1290 209 7 54 chr9 43769131 43769427 -74093200 - AluJo SINE Alu -30 282 1 251 253 126 11 chr9 43769469 43769556 -74093071 - Charlie7 DNA MER1_type -2511 101 5 1316 174 69 43 chr9 43770168 43770470 -74092157 - MSTB LTR MaLR 0 426 117 942 144 195 15 chr9 43770470 43770567 -74092060 - MER30 DNA MER1_type 0 230 152 270 56 0 0 chr9 43770567 43770603 -74092024 + (TG)n Simple_repeat Simple_repeat 1 36 0 219 103 0 0 chr9 43770604 43770643 -74091984 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 942 144 195 15 chr9 43770643 43770738 -74091889 - MER30 DNA MER1_type -77 153 1 832 130 16 0 chr9 43770738 43770860 -74091767 - MSTB LTR MaLR -302 124 1 386 298 79 53 chr9 43770885 43771150 -74091477 - L1ME LINE L1 -547 5623 5352 26 64 0 0 chr9 43771283 43771330 -74091297 + AT_rich Low_complexity Low_complexity 1 47 0 1384 285 40 7 chr9 43771504 43771908 -74090719 + MER70A LTR ERVL 4 420 -52 3251 130 20 0 chr9 43772646 43773176 -74089451 + L1PB2 LINE L1 5609 6147 -4 21 57 0 0 chr9 43774858 43774893 -74087734 + AT_rich Low_complexity Low_complexity 1 35 0 1573 158 3 40 chr9 43774893 43775196 -74087431 - AluJo SINE Alu -20 292 1 189 0 0 0 chr9 43775837 43775858 -74086769 + (TG)n Simple_repeat Simple_repeat 2 22 0 251 308 0 44 chr9 43776050 43776141 -74086486 - MIR SINE MIR -20 242 156 471 123 0 0 chr9 43776142 43776223 -74086404 + (CA)n Simple_repeat Simple_repeat 2 82 0 406 159 307 0 chr9 43776299 43776387 -74086240 + FLAM_C SINE Alu 12 126 -17 810 281 105 23 chr9 43776630 43777029 -74085598 - MLT1K LTR MaLR -2 586 155 431 324 14 7 chr9 43777463 43777602 -74085025 + MIR3 SINE MIR 18 157 -51 1481 202 179 3 chr9 43777603 43777994 -74084633 - LTR46 LTR ERV1 0 460 1 314 330 28 0 chr9 43778036 43778142 -74084485 - L2 LINE L2 -24 3289 3181 2185 94 0 0 chr9 43778440 43778737 -74083890 - AluY SINE Alu -14 297 1 519 324 132 0 chr9 43778827 43779046 -74083581 + MIR SINE MIR 15 262 0 373 324 0 0 chr9 43779197 43779308 -74083319 + MIR SINE MIR 30 140 -122 1092 229 20 112 chr9 43779359 43779752 -74082875 - LTR16C LTR ERVL 0 491 135 221 57 29 0 chr9 43779844 43779879 -74082748 + (CA)n Simple_repeat Simple_repeat 2 37 0 237 314 70 19 chr9 43780100 43780252 -74082375 - MIR SINE MIR -54 208 45 653 128 2 2 chr9 43784486 43785164 -74077463 + HSAT5 Satellite Satellite 1 678 -1 241 202 36 36 chr9 43785195 43785279 -74077348 + HSAT5 Satellite Satellite 1 84 -2 351 214 0 67 chr9 43785339 43785428 -74077199 + HSAT5 Satellite Satellite 1 83 -3 349 145 29 14 chr9 43785702 43785771 -74076856 + HSAT5 Satellite Satellite 9 78 -8 * 556 250 28 7 chr9 43785769 43785913 -74076714 - MSTA LTR MaLR -154 274 128 725 227 182 21 chr9 43785941 43786183 -74076444 + MST-int LTR MaLR 976 1256 -395 285 196 18 0 chr9 43786171 43786227 -74076400 - THE1-int LTR MaLR -613 967 911 * 342 216 78 39 chr9 43786312 43786414 -74076213 - MSTA LTR MaLR -322 106 1 1111 241 60 16 chr9 43786414 43786730 -74075897 - MSTA-int LTR MaLR -1 1650 1321 320 247 155 0 chr9 43786732 43786829 -74075798 - MSTA LTR MaLR -257 171 60 418 224 20 10 chr9 43786878 43786976 -74075651 - MSTA LTR MaLR -329 99 1 6109 224 61 34 chr9 43786976 43788557 -74074070 - MSTA-int LTR MaLR 0 1651 28 437 257 29 7 chr9 43788555 43788695 -74073932 + THE1-int LTR MaLR 466 608 -972 * 1029 211 109 8 chr9 43788731 43788997 -74073630 - MSTA LTR MaLR -60 368 76 848 184 197 29 chr9 43789001 43789245 -74073382 + THE1-int LTR MaLR 907 1191 -389 483 189 21 0 chr9 43789372 43789467 -74073160 - MSTA LTR MaLR -331 97 1 1384 208 6 40 chr9 43789467 43789813 -74072814 - MSTA-int LTR MaLR 0 1651 1318 299 266 43 32 chr9 43789820 43789914 -74072713 - MSTA LTR MaLR -269 159 65 437 175 25 0 chr9 43789964 43790044 -74072583 - MSTA LTR MaLR -331 97 16 5926 229 55 25 chr9 43790059 43791630 -74070997 - MSTA-int LTR MaLR 0 1651 34 458 286 26 26 chr9 43791632 43791786 -74070841 + THE1-int LTR MaLR 464 617 -963 1032 232 74 11 chr9 43791802 43792087 -74070540 - MSTA LTR MaLR -52 376 74 879 183 203 21 chr9 43792089 43792330 -74070297 + THE1-int LTR MaLR 907 1191 -389 239 211 18 18 chr9 43792318 43792375 -74070252 - THE1-int LTR MaLR -613 967 911 * 215 241 11 46 chr9 43792382 43792469 -74070158 + (CACCC)n Simple_repeat Simple_repeat 4 87 0 454 189 21 0 chr9 43792471 43792566 -74070061 - MSTA LTR MaLR -331 97 1 1355 188 40 46 chr9 43792566 43792895 -74069732 - MSTA-int LTR MaLR 0 1651 1325 425 189 104 9 chr9 43792896 43793002 -74069625 - MSTA LTR MaLR -253 175 60 446 204 20 10 chr9 43793051 43793149 -74069478 - MSTA LTR MaLR -329 99 1 626 155 17 9 chr9 43793149 43793265 -74069362 - MSTA-int LTR MaLR 0 1651 1535 * 4792 244 57 27 chr9 43793261 43794579 -74068048 - MSTA-int LTR MaLR -262 1389 32 473 241 156 0 chr9 43794582 43794723 -74067904 + MST-int LTR MaLR 508 670 -981 844 254 79 14 chr9 43794752 43795031 -74067596 - MSTA LTR MaLR -56 372 76 621 242 208 21 chr9 43795035 43795275 -74067352 + THE1-int LTR MaLR 907 1191 -389 256 185 19 19 chr9 43795263 43795317 -74067310 - THE1-int LTR MaLR -613 967 914 * 298 194 87 78 chr9 43795396 43795499 -74067128 - MSTB LTR MaLR -324 104 1 1270 222 30 42 chr9 43795499 43795832 -74066795 - MSTB-int LTR MaLR 0 1651 1323 324 267 109 0 chr9 43795837 43795938 -74066689 - MSTA LTR MaLR -257 171 60 451 227 21 0 chr9 43795988 43796085 -74066542 - MSTA LTR MaLR -329 99 1 6315 215 52 29 chr9 43796085 43797686 -74064941 - MSTA-int LTR MaLR 0 1651 15 430 182 36 13 chr9 43797789 43797902 -74064725 + MST-int LTR MaLR 506 661 -963 1078 199 89 21 chr9 43797918 43798209 -74064418 - MSTA LTR MaLR -52 376 66 760 229 169 50 chr9 43798213 43798492 -74064135 + THE1-int LTR MaLR 907 1218 -362 271 214 18 0 chr9 43798445 43798501 -74064126 - THE1-int LTR MaLR -613 967 911 * 485 198 10 0 chr9 43798597 43798693 -74063934 - MSTA LTR MaLR -331 97 1 1439 211 6 46 chr9 43798695 43799041 -74063586 - MSTA-int LTR MaLR -2 1649 1318 358 206 59 0 chr9 43799045 43799113 -74063514 - MSTA LTR MaLR -262 166 95 449 196 9 37 chr9 43799208 43799315 -74063312 - MSTA LTR MaLR -324 104 1 2388 209 9 39 chr9 43799316 43799877 -74062750 - MSTA-int LTR MaLR -1 1650 1107 2391 249 53 5 chr9 43799883 43800522 -74062105 - MSTA-int LTR MaLR -955 696 27 472 219 156 10 chr9 43800519 43800670 -74061957 + MST-int LTR MaLR 466 661 -963 * 1215 227 59 7 chr9 43800686 43800972 -74061655 - MSTA LTR MaLR -52 376 76 828 212 203 21 chr9 43800976 43801217 -74061410 + THE1-int LTR MaLR 907 1191 -389 259 188 94 82 chr9 43801176 43801261 -74061366 - MSTA-int LTR MaLR -584 996 911 * 447 236 0 0 chr9 43801380 43801486 -74061141 - MSTA-int LTR MaLR -1518 133 28 436 222 152 1 chr9 43801483 43801634 -74060993 + MST-int LTR MaLR 465 657 -959 * 1492 230 32 27 chr9 43801649 43802023 -74060604 - MSTA LTR MaLR -52 376 1 1175 178 37 12 chr9 43802023 43802265 -74060362 - MSTA-int LTR MaLR 0 1651 1404 1320 177 16 0 chr9 43802268 43802511 -74060116 - MSTA-int LTR MaLR -1404 247 1 1446 244 57 3 chr9 43802528 43802877 -74059750 - MSTA LTR MaLR -60 368 1 1948 117 87 46 chr9 43804832 43805269 -74057358 + SN5 Other centromeric 1 455 0 213 196 0 0 chr9 43805511 43805557 -74057070 + (TG)n Simple_repeat Simple_repeat 2 47 0 248 200 24 35 chr9 43805967 43806052 -74056575 + HSAT5 Satellite Satellite 1 84 -2 292 205 13 26 chr9 43806063 43806141 -74056486 + HSAT5 Satellite Satellite 9 85 -1 305 229 27 26 chr9 43806337 43806483 -74056144 + HSAT5 Satellite Satellite 1 146 -1 757 243 22 0 chr9 43807069 43807250 -74055377 + L1MC4 LINE L1 6819 7003 -1039 871 194 48 7 chr9 43807293 43807507 -74055120 + L1MC4 LINE L1 7112 7362 -680 24 53 0 0 chr9 43807813 43807851 -74054776 + AT_rich Low_complexity Low_complexity 1 38 0 231 294 140 37 chr9 43808379 43808652 -74053975 - L2 LINE L2 -227 3045 2745 2125 122 0 0 chr9 43809466 43809761 -74052866 + AluSc SINE Alu 1 295 -14 4539 189 23 17 chr9 43809941 43811075 -74051552 - L1PA16 LINE L1 0 6166 5026 1888 147 17 0 chr9 43811111 43811410 -74051217 - AluSx SINE Alu -8 304 1 1708 134 27 27 chr9 43811588 43811887 -74050740 - AluSg1 SINE Alu -10 299 1 1915 148 0 0 chr9 43811915 43812206 -74050421 + AluSg SINE Alu 1 291 -19 398 230 10 0 chr9 43813161 43813261 -74049366 + L1MA9 LINE L1 6163 6263 -49 4576 42 0 4 chr9 43813559 43814112 -74048515 - L1PA4 LINE L1 -2 6153 5603 203 161 0 0 chr9 43814496 43814527 -74048100 + polypurine Low_complexity Low_complexity 2 32 0 1138 236 7 14 chr9 43816260 43816553 -74046074 + AluJo SINE Alu 6 296 -16 3054 209 29 11 chr9 43816666 43817780 -74044847 + L1MA5 LINE L1 4808 5941 -359 1039 229 31 8 chr9 43817788 43818046 -74044581 + AluJo SINE Alu 1 264 -48 1276 170 80 0 chr9 43818113 43818389 -74044238 + L1MA5 LINE L1 5997 6294 -6 702 320 87 22 chr9 43818425 43818804 -74043823 + MLT1G1 LTR MaLR 79 560 -35 2500 192 39 42 chr9 43820132 43821127 -74041500 + L1MB8 LINE L1 4766 5836 -342 2158 148 78 7 chr9 43821136 43821548 -74041079 + MER61C LTR ERV1 11 434 0 1204 201 84 28 chr9 43821548 43821871 -74040756 + L1MB8 LINE L1 5833 6173 -5 1329 206 96 30 chr9 43822101 43822465 -74040162 + MER4E LTR ERV1 1 388 -391 3259 126 22 0 chr9 43822561 43823053 -74039574 + L1PA10 LINE L1 5655 6157 -11 2004 148 20 0 chr9 43823435 43823739 -74038888 - AluSq SINE Alu -3 310 1 24 32 0 0 chr9 43824314 43824345 -74038282 + AT_rich Low_complexity Low_complexity 1 31 0 320 172 0 16 chr9 43824352 43824416 -74038211 - MER34C LTR ERV1 -100 485 423 1942 122 66 0 chr9 43824676 43824962 -74037665 + AluSg SINE Alu 1 305 -5 2233 114 3 3 chr9 43826151 43826459 -74036168 - AluSg SINE Alu -1 309 2 1922 154 7 0 chr9 43826808 43827100 -74035527 - AluSx SINE Alu -18 294 1 1441 160 0 48 chr9 43827519 43827787 -74034840 - AluJb SINE Alu -20 292 38 203 233 50 0 chr9 43827810 43827870 -74034757 + MIR SINE MIR 198 260 -2 1929 208 78 26 chr9 43828883 43829382 -74033245 + L1MB8 LINE L1 5653 6177 -1 410 302 54 13 chr9 43830450 43830599 -74032028 + L2 LINE L2 2722 2876 -438 1119 226 36 7 chr9 43831325 43831599 -74031028 - L1MB7 LINE L1 0 6184 5903 23 0 0 0 chr9 43833635 43833658 -74028969 + AT_rich Low_complexity Low_complexity 1 23 0 574 290 74 4 chr9 43834716 43834947 -74027680 - L1MB7 LINE L1 -479 5642 5396 2193 119 0 3 chr9 43835061 43835371 -74027256 + AluSq SINE Alu 1 309 -4 591 45 22 22 chr9 43837396 43837485 -74025142 - L1PA5 LINE L1 0 6154 6066 26 30 0 0 chr9 43839487 43839520 -74023107 + AT_rich Low_complexity Low_complexity 1 33 0 1465 231 30 0 chr9 43840221 43840519 -74022108 + AluJo SINE Alu 1 307 -5 206 225 0 0 chr9 43840740 43840780 -74021847 - L2 LINE L2 -12 3301 3262 1952 159 7 0 chr9 43841062 43841364 -74021263 - AluSx SINE Alu -8 304 1 2107 110 7 0 chr9 43841796 43842128 -74020499 - AluSp SINE Alu 0 334 1 2372 214 72 12 chr9 43843436 43844084 -74018543 - L1MD2 LINE L1 -226 6133 5447 600 329 108 67 chr9 43844292 43844969 -74017658 - L2 LINE L2 -340 2974 2270 205 222 56 0 chr9 43848290 43848344 -74014283 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 382 211 19 0 chr9 43848366 43848470 -74014157 + (TA)n Simple_repeat Simple_repeat 1 106 0 269 318 167 0 chr9 43849077 43849203 -74013424 + MLT1H LTR MaLR 399 545 -4 393 353 75 44 chr9 43849339 43849821 -74012806 + L3 LINE CR1 338 834 -743 12630 37 3 0 chr9 43850297 43852609 -74010018 + L1PA4 LINE L1 3841 6155 0 1822 69 0 0 chr9 43854590 43854823 -74007804 - L1PA3 LINE L1 -59 6096 5864 22 80 0 0 chr9 43854962 43855012 -74007615 + AT_rich Low_complexity Low_complexity 1 50 0 1486 182 35 14 chr9 43855407 43855693 -74006934 + AluJo SINE Alu 1 292 -20 2059 158 61 18 chr9 43856596 43856989 -74005638 + MSTA LTR MaLR 19 428 0 2098 225 106 35 chr9 43856991 43857612 -74005015 + MSTA-int LTR MaLR 3 667 -913 2104 111 4 0 chr9 43857634 43857945 -74004682 - AluY SINE Alu 0 314 3 3428 85 12 26 chr9 43857953 43858447 -74004180 - LTR15 LTR ERV1 -6 487 1 4267 185 80 17 chr9 43858449 43859321 -74003306 + MSTA-int LTR MaLR 725 1651 0 2088 178 41 14 chr9 43859321 43859738 -74002889 + MSTA LTR MaLR 1 428 0 21 57 0 0 chr9 43859754 43859789 -74002838 + AT_rich Low_complexity Low_complexity 1 35 0 2071 191 26 28 chr9 43859982 43860444 -74002183 - MER65C LTR ERV1 0 461 1 324 184 80 112 chr9 43860449 43860574 -74002053 - MER65C-int LTR ERV1 -5 4866 4746 518 286 42 5 chr9 43860614 43860827 -74001800 - MER65-int LTR ERV1 -2776 2095 1875 5102 248 158 24 chr9 43860830 43862756 -73999871 + L1PA15-16 LINE L1 3 2226 -4623 2058 144 0 0 chr9 43862756 43863055 -73999572 - AluSx SINE Alu -13 299 1 5102 248 158 24 chr9 43863055 43863198 -73999429 + L1PA15-16 LINE L1 2226 2349 -4500 619 247 97 3 chr9 43863202 43863525 -73999102 - LTR34 LTR ERV1 -189 510 156 368 218 73 18 chr9 43863655 43863765 -73998862 - MER4C LTR ERV1 -346 119 4 1291 163 66 31 chr9 43863965 43864222 -73998405 + AluJo SINE Alu 1 266 -46 344 330 128 35 chr9 43864264 43864361 -73998266 + L1MC4a LINE L1 5542 5629 -2179 1877 132 0 4 chr9 43864361 43864648 -73997979 - AluSx SINE Alu 0 306 21 344 330 128 35 chr9 43864648 43864860 -73997767 + L1MC4a LINE L1 5629 5882 -1926 31 0 0 0 chr9 43865133 43865164 -73997463 + AT_rich Low_complexity Low_complexity 1 31 0 245 296 37 12 chr9 43865202 43865283 -73997344 + MIR SINE MIR 61 143 -65 22 0 0 0 chr9 43866734 43866756 -73995871 + AT_rich Low_complexity Low_complexity 1 22 0 922 81 0 0 chr9 43866756 43866879 -73995748 - L1MA3 LINE L1 0 6305 6183 1263 112 5 21 chr9 43866880 43867067 -73995560 - THE1C LTR MaLR -191 184 1 187 299 15 15 chr9 43870653 43870720 -73991907 - L2 LINE L2 -75 3238 3172 330 107 0 0 chr9 43871055 43871111 -73991516 + (TG)n Simple_repeat Simple_repeat 1 56 0 209 167 19 0 chr9 43871115 43871169 -73991458 + GA-rich Low_complexity Low_complexity 2 56 0 876 295 138 26 chr9 43871197 43871777 -73990850 - L2 LINE L2 -831 2483 1839 611 64 0 0 chr9 43871979 43872057 -73990570 + L1PA8 LINE L1 6077 6154 -18 351 0 0 0 chr9 43872057 43872096 -73990531 + (GA)n Simple_repeat Simple_repeat 2 40 0 1783 178 13 0 chr9 43872102 43872405 -73990222 + AluSx SINE Alu 1 307 -5 279 299 60 30 chr9 43872405 43872606 -73990021 + L1ME LINE L1 5453 5659 -505 364 197 28 44 chr9 43872704 43872811 -73989816 + L1MC4 LINE L1 1995 6984 -1338 320 208 73 52 chr9 43872740 43872836 -73989791 - L1MC3 LINE L1 -1139 6646 6549 * 696 156 47 0 chr9 43872817 43872933 -73989694 + (TA)n Simple_repeat Simple_repeat 1 110 -159 320 267 40 0 chr9 43872933 43873008 -73989619 - L1MCa LINE L1 -4354 2072 1995 304 236 56 0 chr9 43872983 43873055 -73989572 - L1MC3 LINE L1 -1139 6926 6851 * 696 156 47 0 chr9 43873008 43873074 -73989553 + (TA)n Simple_repeat Simple_repeat 110 269 0 334 256 47 0 chr9 43873019 43873105 -73989522 + L1MC4 LINE L1 6615 6704 -1338 * 2172 100 4 0 chr9 43873105 43873386 -73989241 - AluSq SINE Alu -31 282 1 222 319 14 0 chr9 43873440 43873509 -73989118 + L2 LINE L2 3242 3311 -2 1175 149 56 5 chr9 43874032 43874246 -73988381 - MER61E LTR ERV1 -4 565 341 230 209 0 104 chr9 43874330 43874397 -73988230 - MER61E LTR ERV1 -411 158 99 * 358 266 35 9 chr9 43874394 43874507 -73988120 - LTR25 LTR ERV1 -431 363 248 1977 125 11 0 chr9 43875086 43875358 -73987269 - AluSx SINE Alu -2 310 36 768 245 79 47 chr9 43875524 43875842 -73986785 + MER89-int LTR ERV1 1030 1357 -5444 1493 223 27 3 chr9 43875842 43876174 -73986453 + MLT1A1 LTR MaLR 1 340 -25 788 270 40 27 chr9 43876203 43876499 -73986128 + MER89-int LTR ERV1 1361 1660 -5141 2005 130 0 38 chr9 43877799 43877978 -73984649 - AluSg SINE Alu -7 303 140 1758 69 4 26 chr9 43877978 43878237 -73984390 - AluY SINE Alu 0 311 63 2005 130 0 38 chr9 43878237 43878372 -73984255 - AluSg SINE Alu -170 140 1 1532 192 173 16 chr9 43883578 43883948 -73978679 + MSTA LTR MaLR 1 428 0 1460 108 62 17 chr9 43887802 43892183 -73970444 - GSATII Satellite centromeric 0 4577 1 2578 150 10 14 chr9 43892186 43892678 -73969949 - TAR1 Satellite telomeric -105 2006 1517 1136 169 47 13 chr9 43892678 43893678 -73968949 - GSATII Satellite centromeric 0 1034 1 246 150 0 0 chr9 43893687 43893727 -73968900 + SUBTEL_sa Satellite Satellite 121 160 -14 7755 65 4 21 chr9 43893727 43894984 -73967643 + SST1 Satellite centromeric 1 1235 0 267 175 0 0 chr9 43895001 43895058 -73967569 + (TG)n Simple_repeat Simple_repeat 1 57 0 350 139 14 0 chr9 43895081 43895153 -73967474 + CT-rich Low_complexity Low_complexity 2 74 0 328 383 95 27 chr9 43895765 43896060 -73966567 - L1M2 LINE L1 -6526 323 9 401 285 107 52 chr9 43896072 43896469 -73966158 + L1M4 LINE L1 2869 3319 -2827 542 238 73 0 chr9 43896490 43896641 -73965986 - MER58B DNA MER1_type -16 325 164 296 327 40 36 chr9 43896731 43897226 -73965401 + L1M4 LINE L1 3369 3865 -2281 462 391 63 19 chr9 43897285 43897663 -73964964 + L1M4 LINE L1 3957 4351 -1795 1098 256 67 58 chr9 43898976 43899547 -73963080 - L1ME2 LINE L1 -134 6030 5455 1486 100 5 68 chr9 43899862 43900082 -73962545 + AluSp SINE Alu 1 206 -107 1114 249 95 37 chr9 43900187 43900786 -73961841 + L2 LINE L2 2480 3097 -216 1366 225 24 10 chr9 43900790 43901088 -73961539 - AluJo SINE Alu -10 302 1 1420 183 17 61 chr9 43901091 43901451 -73961176 - MLT1D LTR MaLR -2 503 160 567 215 0 37 chr9 43901467 43901602 -73961025 + FLAM_C SINE Alu 14 143 0 1523 214 7 13 chr9 43901604 43901907 -73960720 + AluJo SINE Alu 1 301 -11 2109 252 57 53 chr9 43902003 43902424 -73960203 + MER21B LTR ERV1 19 437 -426 1456 176 0 100 chr9 43902424 43902754 -73959873 - AluJb SINE Alu -14 298 2 2109 252 57 53 chr9 43902754 43902832 -73959795 + MER21B LTR ERV1 437 513 -350 1815 176 0 10 chr9 43902832 43903127 -73959500 + AluJo SINE Alu 9 300 -12 2109 252 57 53 chr9 43903127 43903411 -73959216 + MER21B LTR ERV1 513 806 -57 1274 189 39 45 chr9 43903610 43903943 -73958684 - MST-int LTR MaLR 0 1651 1321 381 198 109 0 chr9 43903945 43904046 -73958581 - MSTA LTR MaLR -257 171 60 414 204 20 10 chr9 43904095 43904193 -73958434 - MSTA LTR MaLR -329 99 1 590 155 17 9 chr9 43904193 43904309 -73958318 - MSTA-int LTR MaLR 0 1651 1535 * 4424 251 57 27 chr9 43904305 43905623 -73957004 - MSTA-int LTR MaLR -262 1389 32 443 241 156 0 chr9 43905626 43905767 -73956860 + MST-int LTR MaLR 508 670 -981 786 265 58 8 chr9 43905796 43906053 -73956574 - MSTA LTR MaLR -56 372 103 536 248 198 21 chr9 43906079 43906321 -73956306 + THE1-int LTR MaLR 907 1191 -389 237 185 19 19 chr9 43906309 43906363 -73956264 - THE1-int LTR MaLR -613 967 914 * 308 206 32 0 chr9 43906482 43906545 -73956082 - MSTA LTR MaLR -363 65 1 1220 219 30 42 chr9 43906545 43906878 -73955749 - MSTA-int LTR MaLR 0 1651 1323 283 289 78 0 chr9 43906883 43906973 -73955654 - MSTA LTR MaLR -257 171 75 421 227 21 0 chr9 43907034 43907131 -73955496 - MSTA LTR MaLR -329 99 1 5695 236 49 20 chr9 43907131 43908709 -73953918 - MSTA-int LTR MaLR 0 1651 28 519 199 153 10 chr9 43908704 43908858 -73953769 + MST-int LTR MaLR 463 661 -963 * 700 251 78 12 chr9 43908866 43909121 -73953506 - MSTA LTR MaLR -43 385 114 287 197 15 0 chr9 43909293 43909359 -73953268 - MSTA-int LTR MaLR -1549 102 36 313 225 196 7 chr9 43909365 43909503 -73953124 + MST-int LTR MaLR 507 670 -981 874 251 55 12 chr9 43909532 43909787 -73952840 - MSTA LTR MaLR -54 374 109 21 0 0 0 chr9 43910147 43910168 -73952459 + AT_rich Low_complexity Low_complexity 1 21 0 1855 177 0 0 chr9 43910421 43910721 -73951906 + AluSx SINE Alu 3 302 -10 356 335 46 31 chr9 43911307 43911501 -73951126 + L1ME2 LINE L1 5750 5946 -218 230 217 0 0 chr9 43911721 43911767 -73950860 + (CA)n Simple_repeat Simple_repeat 1 46 0 300 169 181 12 chr9 43913843 43913926 -73948701 + MER5A DNA MER1_type 10 106 -83 2412 83 0 0 chr9 43914802 43915104 -73947523 - AluY SINE Alu -9 302 1 1357 229 0 27 chr9 43915300 43915597 -73947030 - AluJo SINE Alu -23 289 1 1686 183 0 17 chr9 43915631 43915921 -73946706 + AluJb SINE Alu 3 287 -25 6446 49 1 0 chr9 43916298 43917074 -73945553 + L1PA5 LINE L1 5376 6152 -2 22 35 0 0 chr9 43917320 43917349 -73945278 + AT_rich Low_complexity Low_complexity 1 29 0 1220 205 35 56 chr9 43917441 43917729 -73944898 + AluJb SINE Alu 13 294 -18 1937 131 32 3 chr9 43917983 43918152 -73944475 - AluSx SINE Alu -19 293 111 290 44 0 22 chr9 43918152 43918197 -73944430 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1937 131 32 3 chr9 43918197 43918310 -73944317 - AluSx SINE Alu -201 111 3 634 194 0 0 chr9 43918567 43918665 -73943962 - FLAM_A SINE Alu -43 99 2 196 307 134 24 chr9 43920992 43921119 -73941508 + MIR SINE MIR 19 159 -49 222 336 93 44 chr9 43921724 43921950 -73940677 + MIR SINE MIR 20 256 -6 655 219 0 24 chr9 43922106 43922229 -73940398 + FLAM_A SINE Alu 6 125 -17 180 97 0 0 chr9 43922262 43922293 -73940334 + (TTTTTG)n Simple_repeat Simple_repeat 4 34 0 661 135 51 39 chr9 43922676 43922832 -73939795 - MER21A LTR ERV1 -29 902 745 793 141 44 7 chr9 43922836 43922971 -73939656 + Tigger7 DNA MER2_type 2448 2587 0 2451 157 0 39 chr9 43923988 43924446 -73938181 + L1MC1 LINE L1 5894 6333 0 2078 133 0 0 chr9 43924455 43924749 -73937878 + AluSx SINE Alu 1 294 -18 315 0 0 0 chr9 43924792 43924827 -73937800 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2009 149 7 3 chr9 43924827 43925136 -73937491 + AluSq SINE Alu 1 310 -3 33 0 0 0 chr9 43925255 43925288 -73937339 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr9 43925627 43925662 -73936965 + AT_rich Low_complexity Low_complexity 1 35 0 2515 190 48 9 chr9 43925695 43926236 -73936391 + MER68 LTR ERV1 1 562 0 1311 206 0 71 chr9 43926601 43926927 -73935700 + AluJb SINE Alu 1 303 -9 892 173 0 0 chr9 43926962 43927101 -73935526 + FAM SINE Alu 22 160 -25 237 291 0 0 chr9 43927403 43927458 -73935169 + (TG)n Simple_repeat Simple_repeat 2 56 0 1957 183 40 12 chr9 43927711 43928133 -73934494 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr9 43928403 43928425 -73934202 + AT_rich Low_complexity Low_complexity 1 22 0 210 294 101 18 chr9 43928956 43929065 -73933562 + MIR SINE MIR 86 203 -59 541 226 0 0 chr9 43929740 43929846 -73932781 - U6 snRNA snRNA -1 106 1 637 177 0 0 chr9 43930809 43930922 -73931705 + FLAM_C SINE Alu 31 143 0 204 125 0 0 chr9 43931757 43931789 -73930838 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2275 103 0 0 chr9 43931839 43932131 -73930496 + AluSc SINE Alu 2 293 -16 21 0 0 0 chr9 43933576 43933597 -73929030 + AT_rich Low_complexity Low_complexity 1 21 0 418 264 61 19 chr9 43933977 43934212 -73928415 - MER102a DNA MER1_type -1 329 81 356 200 322 11 chr9 43935143 43935233 -73927394 - FLAM_A SINE Alu -15 118 1 265 261 90 54 chr9 43935258 43935369 -73927258 + MER5A DNA MER1_type 75 189 0 21 36 0 0 chr9 43936101 43936129 -73926498 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 43936231 43936260 -73926367 + AT_rich Low_complexity Low_complexity 1 29 0 565 269 145 45 chr9 43937029 43937257 -73925370 + MIR SINE MIR 4 251 -11 1534 176 42 7 chr9 43937261 43937545 -73925082 - AluJo SINE Alu -18 294 1 518 238 13 40 chr9 43937646 43937797 -73924830 + MER104 DNA Tc2 34 180 0 184 291 18 0 chr9 43938253 43938308 -73924319 + L2 LINE L2 3216 3271 -1 276 148 57 23 chr9 43939352 43939440 -73923187 + (TA)n Simple_repeat Simple_repeat 2 92 0 815 74 0 0 chr9 43939452 43939560 -73923067 + AluSq/x SINE Alu 1 108 -204 297 284 17 9 chr9 43939874 43939990 -73922637 + L1ME3A LINE L1 4905 5021 -1125 497 307 122 27 chr9 43940196 43940607 -73922020 + L1ME3A LINE L1 5499 5948 -222 31 26 0 0 chr9 43942579 43942617 -73920010 + AT_rich Low_complexity Low_complexity 1 38 0 2314 59 7 10 chr9 43943872 43944176 -73918451 - AluY SINE Alu -7 304 2 438 115 0 53 chr9 43944394 43944507 -73918120 + (TTCCC)n Simple_repeat Simple_repeat 2 108 0 573 202 0 0 chr9 43944696 43944800 -73917827 - AluJb SINE Alu -14 298 195 862 241 103 103 chr9 43944906 43945224 -73917403 - MLT1D LTR MaLR 0 505 185 2050 128 3 10 chr9 43945224 43945530 -73917097 + AluSx SINE Alu 1 304 -8 862 241 103 103 chr9 43945530 43945714 -73916913 - MLT1D LTR MaLR -319 186 3 63 51 0 0 chr9 43946303 43946401 -73916226 + AT_rich Low_complexity Low_complexity 1 98 0 265 182 20 40 chr9 43946529 43946628 -73915999 + (TTATA)n Simple_repeat Simple_repeat 2 98 0 337 315 22 62 chr9 43946628 43946806 -73915821 - MIR SINE MIR -90 172 2 3395 266 54 26 chr9 43946811 43947269 -73915358 - L1ME1 LINE L1 -239 5996 5552 2220 114 3 0 chr9 43947269 43947575 -73915052 - AluSq SINE Alu -6 307 1 1594 169 3 60 chr9 43947577 43947891 -73914736 - AluJo SINE Alu -16 296 1 3395 266 54 26 chr9 43947891 43949308 -73913319 - L1ME1 LINE L1 -683 5552 4064 1008 207 54 86 chr9 43949317 43949439 -73913188 - L1ME1 LINE L1 -4044 2352 2228 2265 102 0 3 chr9 43949439 43949744 -73912883 - AluSg SINE Alu 0 310 7 1008 207 54 86 chr9 43949744 43949797 -73912830 - L1ME1 LINE L1 -4168 2228 2175 2627 170 27 47 chr9 43949797 43950349 -73912278 + MER34 LTR ERV1 1 541 -1 1008 207 54 86 chr9 43950349 43950675 -73911952 - L1ME1 LINE L1 -4221 2175 1866 2134 128 3 0 chr9 43950696 43951002 -73911625 - AluSc SINE Alu 0 309 3 721 236 69 6 chr9 43951021 43951195 -73911432 - MER58A DNA MER1_type -38 186 2 1071 306 28 0 chr9 43951229 43951627 -73911000 - L1ME1 LINE L1 -4568 1828 1420 2413 181 18 20 chr9 43951645 43952137 -73910490 + L1P LINE L1 4076 4566 -1580 22 0 0 0 chr9 43952211 43952233 -73910394 + AT_rich Low_complexity Low_complexity 1 22 0 397 329 57 52 chr9 43952269 43952670 -73909957 - HAL1 LINE L1 -868 1639 1237 310 331 81 39 chr9 43952692 43953024 -73909603 - HAL1 LINE L1 -1313 1194 849 2142 121 48 22 chr9 43953445 43953800 -73908827 + THE1B LTR MaLR 1 364 0 9192 113 11 0 chr9 43953800 43955096 -73907531 + THE1B-int LTR MaLR 1 1310 -270 1397 269 78 63 chr9 43955096 43955547 -73907080 + L1ME2 LINE L1 4157 4600 -1564 2093 122 0 26 chr9 43955547 43955858 -73906769 + AluY SINE Alu 1 303 -8 1397 269 78 63 chr9 43955858 43956777 -73905850 + L1ME2 LINE L1 4600 5565 -599 2048 98 0 60 chr9 43956777 43957092 -73905535 + AluY SINE Alu 1 296 -15 1397 269 78 63 chr9 43957092 43957508 -73905119 + L1ME2 LINE L1 5565 5973 -191 828 174 0 0 chr9 43957513 43957651 -73904976 + AluSg/x SINE Alu 161 298 -14 2198 113 0 0 chr9 43957919 43958219 -73904408 + AluY SINE Alu 1 300 -11 203 394 94 25 chr9 43959067 43959227 -73903400 - L2 LINE L2 0 3272 3102 185 108 27 0 chr9 43959446 43959483 -73903144 + CT-rich Low_complexity Low_complexity 2 39 0 212 86 29 0 chr9 43959486 43959521 -73903106 + (TA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr9 43959537 43959581 -73903046 + AT_rich Low_complexity Low_complexity 1 44 0 1763 142 40 20 chr9 43959976 43960279 -73902348 + AluSg1 SINE Alu 1 309 0 2126 128 0 3 chr9 43961470 43961783 -73900844 - AluSq SINE Alu -1 312 1 2273 133 20 145 chr9 43962368 43962878 -73899749 + MER4E LTR ERV1 305 750 -29 1429 165 134 0 chr9 43963364 43963625 -73899002 + AluJb SINE Alu 2 297 -5 2031 174 29 84 chr9 43965301 43965712 -73896915 - L1PB4 LINE L1 -3 6153 5776 5265 88 0 4 chr9 43965712 43966425 -73896202 - L1PA7 LINE L1 -7 6147 5438 2031 174 29 84 chr9 43966425 43966535 -73896092 - L1PB4 LINE L1 -380 5776 5661 683 344 122 20 chr9 43966898 43967455 -73895172 - L2 LINE L2 -25 3288 2670 306 0 0 0 chr9 43968159 43968193 -73894434 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr9 43970115 43970139 -73892488 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr9 43970294 43970323 -73892304 + AT_rich Low_complexity Low_complexity 1 29 0 1229 182 39 9 chr9 43970514 43970745 -73891882 + AluJo SINE Alu 21 258 -54 258 136 0 0 chr9 43970748 43970792 -73891835 + (A)n Simple_repeat Simple_repeat 1 44 0 594 260 0 0 chr9 43970963 43971086 -73891541 + FLAM_A SINE Alu 2 124 -9 2976 189 32 8 chr9 43971242 43971831 -73890796 - MER6A DNA MER2_type -1 604 2 201 218 0 58 chr9 43972368 43972455 -73890172 + A-rich Low_complexity Low_complexity 4 85 0 22 0 0 0 chr9 43974053 43974075 -73888552 + AT_rich Low_complexity Low_complexity 1 22 0 3035 175 73 17 chr9 43974118 43974257 -73888370 - L1MA6 LINE L1 -365 5935 5805 565 14 27 0 chr9 43974257 43974331 -73888296 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 3035 175 73 17 chr9 43974331 43974912 -73887715 - L1MA6 LINE L1 -495 5805 5183 22 0 0 0 chr9 43975515 43975537 -73887090 + AT_rich Low_complexity Low_complexity 1 22 0 326 314 0 0 chr9 43975541 43975643 -73886984 + MER103 DNA DNA 26 127 -39 235 304 108 23 chr9 43976015 43976229 -73886398 - L1MEd LINE L1 -4862 1257 1026 379 296 32 0 chr9 43976532 43976657 -73885970 - MIR SINE MIR -67 195 67 422 236 82 127 chr9 43977263 43977640 -73884987 - MER57B LTR ERV1 -2 401 42 303 311 57 6 chr9 43978081 43978258 -73884369 - L1MEd LINE L1 -4969 1150 965 261 208 0 0 chr9 43978260 43978308 -73884319 + MER58B DNA MER1_type 279 326 -15 266 254 9 53 chr9 43978385 43978499 -73884128 - L1MEd LINE L1 -5554 565 457 2606 32 0 10 chr9 43978654 43978964 -73883663 + AluY SINE Alu 1 307 -4 306 350 62 0 chr9 43979030 43979190 -73883437 - L1MEd LINE L1 -5943 176 7 315 335 18 6 chr9 43980440 43980610 -73882017 + MER5B DNA MER1_type 4 175 -3 4377 137 8 3 chr9 43980615 43981324 -73881303 + L1PA13 LINE L1 5451 6163 0 1129 222 118 12 chr9 43982638 43982976 -73879651 - MLT1A2 LTR MaLR 0 374 1 388 64 51 13 chr9 43982977 43983055 -73879572 + (TA)n Simple_repeat Simple_repeat 1 81 0 320 209 93 0 chr9 43983056 43983142 -73879485 - L1MC4 LINE L1 -1337 6705 6612 1795 190 18 0 chr9 43983192 43983518 -73879109 + Tigger1 DNA MER2_type 2 333 -2085 1399 161 13 67 chr9 43983576 43983874 -73878753 + AluJo SINE Alu 1 282 -30 1602 263 53 71 chr9 43984372 43984980 -73877647 - MER77 LTR ERV1 0 605 9 986 306 63 11 chr9 43985134 43985595 -73877032 - L1ME3A LINE L1 -171 5999 5515 524 278 75 63 chr9 43985780 43986111 -73876516 - LTR68 LTR ERV1 -292 448 114 733 366 149 0 chr9 43986126 43986577 -73876050 - MER69 DNA AcHobo -2008 518 1 333 303 57 100 chr9 43986578 43986984 -73875643 - L1ME LINE L1 -265 5856 5460 25 0 0 0 chr9 43987525 43987550 -73875077 + AT_rich Low_complexity Low_complexity 1 25 0 315 85 0 0 chr9 43989056 43989103 -73873524 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2028 117 3 0 chr9 43989103 43989385 -73873242 - AluSg SINE Alu -27 283 1 233 233 50 0 chr9 43989743 43989803 -73872824 - MLT1J1 LTR MaLR -315 131 69 262 255 67 40 chr9 43989986 43990135 -73872492 + L1ME LINE L1 5522 5674 -492 35 0 0 0 chr9 43991033 43991068 -73871559 + AT_rich Low_complexity Low_complexity 1 35 0 1958 110 25 7 chr9 43991666 43991948 -73870679 + AluSx SINE Alu 5 291 -21 32 26 0 0 chr9 43993301 43993340 -73869287 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr9 43993473 43993513 -73869114 + AT_rich Low_complexity Low_complexity 1 40 0 741 326 115 40 chr9 43993525 43994436 -73868191 + L2 LINE L2 2329 3312 -1 200 242 16 16 chr9 43994559 43994621 -73868006 + (TATATG)n Simple_repeat Simple_repeat 3 64 0 32 81 0 0 chr9 43995271 43995345 -73867282 + AT_rich Low_complexity Low_complexity 1 74 0 289 274 176 0 chr9 43995723 43995825 -73866802 + MIR3 SINE MIR 83 202 -6 23 0 0 0 chr9 43996675 43996698 -73865929 + AT_rich Low_complexity Low_complexity 1 23 0 312 313 42 72 chr9 43997606 43997696 -73864931 + Charlie2 DNA MER1_type 2 93 -2769 1594 258 59 35 chr9 43997696 43998203 -73864424 - LTR40a LTR ERVL 0 519 1 312 313 42 72 chr9 43998203 43998377 -73864250 + Charlie2 DNA MER1_type 93 258 -2604 229 250 0 0 chr9 43998547 43998599 -73864028 + LTR30 LTR ERV1 1 52 -670 519 117 56 145 chr9 43998603 43998782 -73863845 + LTR12 LTR ERV1 123 285 -429 226 227 0 40 chr9 43998783 43998858 -73863769 + LTR30 LTR ERV1 553 624 -98 517 143 59 76 chr9 43998858 43998977 -73863650 + LTR12 LTR ERV1 362 478 -236 437 315 41 6 chr9 43998981 43999184 -73863443 - MIR SINE MIR -27 235 27 834 201 44 84 chr9 43999288 43999537 -73863090 - MER8 DNA MER2_type 0 239 1 339 265 95 42 chr9 44000136 44000455 -73862172 + MLT1J2 LTR MaLR 40 450 0 603 286 80 50 chr9 44000534 44000897 -73861730 + MLT1I LTR MaLR 2 375 -34 700 286 19 19 chr9 44002580 44002793 -73859834 - MER58A DNA MER1_type -10 214 2 29 0 0 0 chr9 44002914 44002943 -73859684 + AT_rich Low_complexity Low_complexity 1 29 0 2148 98 3 13 chr9 44003282 44003589 -73859038 - AluY SINE Alu -7 304 1 384 218 0 0 chr9 44003705 44003792 -73858835 + (TATATG)n Simple_repeat Simple_repeat 3 89 0 339 216 9 18 chr9 44003792 44003901 -73858726 + L1MC4 LINE L1 2006 6983 -1339 311 333 0 0 chr9 44003821 44003911 -73858716 - L1MC4 LINE L1 -1339 6703 6614 * 240 184 0 0 chr9 44003911 44003960 -73858667 + (TA)n Simple_repeat Simple_repeat 2 50 0 327 344 50 28 chr9 44004052 44004270 -73858357 + L2 LINE L2 1564 1786 -1528 411 232 9 176 chr9 44004280 44004317 -73858310 - L1M4 LINE L1 -2022 4124 4082 1387 227 42 51 chr9 44004317 44004823 -73857804 + MLT1D LTR MaLR 1 501 -4 411 232 9 176 chr9 44004823 44005108 -73857519 - L1M4 LINE L1 -2064 4082 3856 250 336 23 16 chr9 44005482 44005610 -73857017 - L1MEc LINE L1 -5980 281 153 245 313 90 8 chr9 44005731 44005865 -73856762 - L1MEc LINE L1 -5923 147 3 196 281 29 151 chr9 44006404 44006508 -73856119 + L2 LINE L2 2476 2591 -723 1162 259 19 35 chr9 44006508 44006879 -73855748 - MLT1A1 LTR MaLR 0 365 1 196 281 29 151 chr9 44006879 44006922 -73855705 + L2 LINE L2 2591 2587 -727 11406 32 0 0 chr9 44006922 44009050 -73853577 - L1PA3 LINE L1 0 6155 4028 196 281 29 151 chr9 44009050 44009139 -73853488 + L2 LINE L2 2586 2684 -630 1557 201 160 9 chr9 44009140 44009545 -73853082 - MER31B LTR ERV1 0 543 1 501 283 102 54 chr9 44009606 44010048 -73852579 - L1M4 LINE L1 -3574 2572 2110 23 0 0 0 chr9 44010060 44010083 -73852544 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 44010160 44010197 -73852430 + AT_rich Low_complexity Low_complexity 1 37 0 33 0 0 0 chr9 44010791 44010824 -73851803 + AT_rich Low_complexity Low_complexity 1 33 0 24 53 0 0 chr9 44010993 44011031 -73851596 + AT_rich Low_complexity Low_complexity 1 38 0 489 39 13 26 chr9 44011391 44011469 -73851158 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1888 142 3 14 chr9 44011661 44011956 -73850671 + AluSq SINE Alu 1 292 -21 183 333 51 0 chr9 44012383 44012461 -73850166 + MIR SINE MIR 76 157 -105 30 69 0 0 chr9 44013201 44013259 -73849368 + AT_rich Low_complexity Low_complexity 1 58 0 195 259 74 0 chr9 44014511 44014565 -73848062 - L2 LINE L2 -5 3308 3251 690 153 22 7 chr9 44014611 44014748 -73847879 + L1PA16 LINE L1 6026 6164 -2 3854 227 104 34 chr9 44014805 44014975 -73847652 + L1MC4a LINE L1 6517 6674 -1134 282 56 0 0 chr9 44014975 44015011 -73847616 + (TA)n Simple_repeat Simple_repeat 2 37 0 2275 95 0 3 chr9 44015011 44015306 -73847321 - AluY SINE Alu -17 294 1 3854 227 104 34 chr9 44015306 44016165 -73846462 + L1MC4a LINE L1 6674 7562 -246 2250 82 3 10 chr9 44016165 44016470 -73846157 - AluY SINE Alu -5 306 4 3854 227 104 34 chr9 44016470 44016736 -73845891 + L1MC4a LINE L1 7562 7808 0 213 159 0 0 chr9 44017273 44017317 -73845310 + A-rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr9 44017319 44017340 -73845287 + AT_rich Low_complexity Low_complexity 1 21 0 200 448 26 0 chr9 44017403 44017519 -73845108 - L2 LINE L2 -623 2691 2573 396 357 31 27 chr9 44017654 44017878 -73844749 - L2 LINE L2 -943 2371 2147 2228 176 19 27 chr9 44018236 44018718 -73843909 + L1MA5 LINE L1 5823 6300 0 26 0 0 0 chr9 44019129 44019155 -73843472 + AT_rich Low_complexity Low_complexity 1 26 0 199 393 25 33 chr9 44020981 44021103 -73841524 - L2 LINE L2 -3 3269 3149 2068 126 13 0 chr9 44021268 44021577 -73841050 - AluSp SINE Alu 0 313 1 2390 68 7 0 chr9 44022166 44022461 -73840166 - AluSp SINE Alu -16 297 1 248 216 0 0 chr9 44022510 44022561 -73840066 - MER58B DNA MER1_type 0 341 291 1015 196 93 47 chr9 44022627 44022948 -73839679 - MER58B DNA MER1_type -5 336 1 258 299 47 16 chr9 44023863 44023990 -73838637 - L1ME LINE L1 -376 5786 5656 603 352 37 3 chr9 44024162 44024533 -73838094 + L1ME3A LINE L1 5521 5904 -266 47 19 0 0 chr9 44024857 44024911 -73837716 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr9 44024980 44025010 -73837617 + AT_rich Low_complexity Low_complexity 1 30 0 230 293 8 16 chr9 44025533 44025656 -73836971 + HAL1 LINE L1 923 1044 -1463 28 29 0 0 chr9 44026851 44026886 -73835741 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 44027284 44027306 -73835321 + AT_rich Low_complexity Low_complexity 1 22 0 303 278 97 42 chr9 44027487 44027631 -73834996 - HAL1b LINE L1 -746 602 451 1419 289 44 68 chr9 44027650 44028493 -73834134 - L1ME1 LINE L1 -27 6139 5317 669 191 48 8 chr9 44028884 44029010 -73833617 + FRAM SINE Alu 1 131 -45 21 57 0 0 chr9 44029019 44029054 -73833573 + AT_rich Low_complexity Low_complexity 1 35 0 399 304 52 40 chr9 44029174 44029599 -73833028 - L1ME1 LINE L1 -1391 4755 4326 1363 199 7 0 chr9 44029636 44029908 -73832719 + L1PA16 LINE L1 5877 6150 -16 727 209 7 0 chr9 44029908 44030047 -73832580 + MER67A LTR ERV1 404 543 0 249 345 23 0 chr9 44030058 44030145 -73832482 + L2 LINE L2 3225 3313 0 1151 206 5 5 chr9 44030166 44030380 -73832247 - MER46A DNA MER2_type -22 214 1 597 262 92 17 chr9 44030381 44030416 -73832211 - L1ME1 LINE L1 -1825 4321 4290 459 0 0 0 chr9 44030416 44030467 -73832160 + (TA)n Simple_repeat Simple_repeat 1 51 0 597 262 92 17 chr9 44030467 44030725 -73831902 - L1ME1 LINE L1 -1856 4290 4006 1575 232 30 24 chr9 44030725 44031155 -73831472 - MER89 LTR ERV1 0 559 28 1922 228 7 15 chr9 44031159 44031562 -73831065 - MER89-int LTR ERV1 -1 6800 6401 1558 282 58 31 chr9 44031562 44032080 -73830547 + MER74A LTR ERVL 1 532 -26 9163 204 25 16 chr9 44032139 44034344 -73828283 - L1PA16 LINE L1 -9 6157 3909 2211 48 44 0 chr9 44034344 44034646 -73827981 - AluY SINE Alu 0 314 1 9163 204 25 16 chr9 44034646 44035582 -73827045 - L1PA16 LINE L1 -2257 3909 2983 523 235 51 3 chr9 44036382 44036566 -73826061 - MLT1A2 LTR MaLR -4 370 162 756 192 11 50 chr9 44036606 44036788 -73825839 - MLT1A2 LTR MaLR -194 180 6 23 33 0 0 chr9 44037577 44037607 -73825020 + AT_rich Low_complexity Low_complexity 1 30 0 2185 117 0 0 chr9 44037666 44037965 -73824662 - AluSx SINE Alu -13 299 1 431 333 7 0 chr9 44038030 44038165 -73824462 + L1ME LINE L1 5506 5641 -521 1672 234 76 0 chr9 44038545 44038926 -73823701 + MER74A LTR ERVL 119 528 -30 207 290 0 0 chr9 44040021 44040090 -73822537 + (TCTCTG)n Simple_repeat Simple_repeat 4 72 0 22 70 0 0 chr9 44040313 44040356 -73822271 + AT_rich Low_complexity Low_complexity 1 43 0 29 47 0 0 chr9 44040603 44040646 -73821981 + AT_rich Low_complexity Low_complexity 1 43 0 29 70 0 0 chr9 44041014 44041071 -73821556 + AT_rich Low_complexity Low_complexity 1 57 0 21 71 0 0 chr9 44042400 44042442 -73820185 + AT_rich Low_complexity Low_complexity 1 42 0 188 111 28 0 chr9 44043327 44043363 -73819264 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 266 305 172 29 chr9 44043501 44043675 -73818952 + MIR SINE MIR 64 262 0 455 302 70 35 chr9 44044222 44044577 -73818050 - L1ME LINE L1 -348 5822 5458 24 32 0 0 chr9 44045731 44045762 -73816865 + AT_rich Low_complexity Low_complexity 1 31 0 1856 256 72 53 chr9 44045902 44046811 -73815816 - L1ME1 LINE L1 -5 6161 5244 1807 233 48 41 chr9 44046812 44047272 -73815355 - MER77 LTR ERV1 0 605 143 436 281 92 20 chr9 44047240 44047393 -73815234 - MER77 LTR ERV1 -380 225 62 * 21 0 0 0 chr9 44047475 44047496 -73815131 + AT_rich Low_complexity Low_complexity 1 21 0 8783 98 5 2 chr9 44047496 44049533 -73813094 + L1PA7 LINE L1 4089 6144 -10 417 275 70 58 chr9 44049541 44049955 -73812672 - L1ME1 LINE L1 -973 5173 4755 234 62 0 0 chr9 44050587 44050619 -73812008 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 4164 90 25 10 chr9 44050619 44051222 -73811405 - L1PA8 LINE L1 -28 6144 5533 1743 156 55 0 chr9 44052071 44052249 -73810378 - AluSx SINE Alu -7 305 103 212 0 36 0 chr9 44052249 44052277 -73810350 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1743 156 55 0 chr9 44052277 44052387 -73810240 - AluSx SINE Alu -209 103 1 358 266 11 0 chr9 44052394 44052488 -73810139 - MIR SINE MIR -65 197 103 395 263 11 0 chr9 44052966 44053061 -73809566 - Zaphod DNA AcHobo -1 4030 3935 346 20 39 0 chr9 44053557 44053608 -73809019 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 1388 225 21 106 chr9 44053822 44053853 -73808774 + MLT1D LTR MaLR 1 33 -472 2033 156 37 6 chr9 44053853 44054206 -73808421 + THE1B LTR MaLR 1 364 0 1388 225 21 106 chr9 44054206 44054459 -73808168 + MLT1D LTR MaLR 33 224 -281 1108 155 10 5 chr9 44054459 44054666 -73807961 - L1MA6 LINE L1 -6 6294 6087 1388 225 21 106 chr9 44054666 44054901 -73807726 + MLT1D LTR MaLR 224 477 -28 280 341 138 39 chr9 44055508 44055942 -73806685 - L2 LINE L2 -2248 1066 590 671 247 29 23 chr9 44058069 44058243 -73804384 - MER45A DNA AcHobo -3 175 1 24 67 0 0 chr9 44058444 44058489 -73804138 + AT_rich Low_complexity Low_complexity 1 45 0 33 66 0 0 chr9 44058548 44058609 -73804018 + AT_rich Low_complexity Low_complexity 1 61 0 180 0 0 0 chr9 44059511 44059531 -73803096 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 996 338 33 7 chr9 44059561 44059984 -73802643 + LTR16B LTR ERVL 22 455 -9 210 71 0 0 chr9 44060600 44060628 -73801999 + (T)n Simple_repeat Simple_repeat 1 28 0 2072 107 10 13 chr9 44060910 44061218 -73801409 - AluSg SINE Alu -3 307 1 1655 200 15 6 chr9 44061379 44061719 -73800908 + L1M3 LINE L1 5480 5822 -361 516 226 0 0 chr9 44061726 44061828 -73800799 + AluJ/FLAM SINE Alu 1 102 -210 2014 126 0 3 chr9 44062432 44062717 -73799910 + AluSc SINE Alu 16 299 -10 2133 94 3 7 chr9 44062921 44063220 -73799407 + AluSq SINE Alu 1 298 -15 1295 207 194 3 chr9 44064495 44064882 -73797745 - LOR1b LTR ERV1 0 461 1 1013 172 32 16 chr9 44065541 44065727 -73796900 + AluSx SINE Alu 1 189 -123 249 307 79 76 chr9 44065785 44066101 -73796526 + L3 LINE CR1 1142 1458 -119 331 322 153 17 chr9 44066962 44067139 -73795488 + L3 LINE CR1 1307 1507 -70 355 248 20 20 chr9 44068852 44068953 -73793674 + HsTC2 DNA Tc2 4 104 -1794 377 289 75 47 chr9 44068965 44069218 -73793409 - L1MEd LINE L1 -5493 626 367 386 191 0 48 chr9 44069267 44069351 -73793276 + HsTC2 DNA Tc2 1821 1900 0 1760 101 4 12 chr9 44069857 44070105 -73792522 - AluSg1 SINE Alu -20 289 44 446 301 8 0 chr9 44070580 44070703 -73791924 - MIR SINE MIR -60 202 79 1129 222 80 34 chr9 44071880 44072231 -73790396 + MLT1A2 LTR MaLR 4 370 -4 21 0 0 0 chr9 44072902 44072923 -73789704 + AT_rich Low_complexity Low_complexity 1 21 0 306 248 94 26 chr9 44074079 44074196 -73788431 + L1ME4a LINE L1 5976 6100 -21 879 144 0 14 chr9 44074209 44074355 -73788272 - AluJb SINE Alu -6 306 163 10337 203 72 45 chr9 44074355 44075203 -73787424 + L1M1 LINE L1 3305 4128 -3437 1699 60 94 0 chr9 44075203 44075438 -73787189 - AluY SINE Alu -16 295 39 10337 203 72 45 chr9 44075438 44077946 -73784681 + L1M1 LINE L1 4128 6735 -830 367 292 140 99 chr9 44078949 44079456 -73783171 + L1M2 LINE L1 395 922 -5927 523 241 128 35 chr9 44080184 44080387 -73782240 + MER77 LTR ERV1 4 225 -380 1224 280 56 30 chr9 44080407 44080835 -73781792 + MER77 LTR ERV1 161 599 -6 478 327 79 25 chr9 44080885 44081252 -73781375 - L1MEc LINE L1 -4574 1822 1436 281 338 76 22 chr9 44081286 44081511 -73781116 - L2 LINE L2 -4 3309 3073 188 292 79 22 chr9 44082759 44082848 -73779779 - L2 LINE L2 -4 3268 3175 1359 195 63 30 chr9 44083296 44083629 -73778998 - MER2 DNA MER2_type 0 344 1 196 389 0 0 chr9 44083899 44083971 -73778656 + L2 LINE L2 2843 2914 -358 535 228 175 6 chr9 44083976 44084147 -73778480 + MLT1A1 LTR MaLR 1 200 -165 425 129 3 5 chr9 44084141 44084218 -73778409 + MLT1A1 LTR MaLR 289 390 0 * 859 339 13 10 chr9 44084254 44084643 -73777984 + L1MEc LINE L1 411 800 -5596 347 260 42 16 chr9 44084722 44084914 -73777713 + L1MEc LINE L1 972 1168 -5228 294 277 6 54 chr9 44085098 44085264 -73777363 + HAL1 LINE L1 1389 1546 -961 23 0 0 0 chr9 44085265 44085288 -73777339 + AT_rich Low_complexity Low_complexity 1 23 0 320 314 22 81 chr9 44085374 44085559 -73777068 - MER96 DNA MER1_type? -1 174 1 255 215 0 118 chr9 44085683 44085730 -73776897 + L1MEc LINE L1 1985 2017 -4379 2767 10 0 0 chr9 44085730 44086035 -73776592 + AluYa5 SINE Alu 1 305 -6 255 215 0 118 chr9 44086035 44086080 -73776547 + L1MEc LINE L1 2017 2066 -4330 366 268 146 21 chr9 44086118 44086551 -73776076 + L1MEc LINE L1 2047 2495 -3720 516 204 91 8 chr9 44086568 44086700 -73775927 + L1MA3 LINE L1 6163 6305 0 1035 219 63 45 chr9 44086811 44087180 -73775447 + MLT1A1 LTR MaLR 1 335 -30 716 273 75 27 chr9 44087258 44087822 -73774805 + L1MEc LINE L1 3190 3780 -2435 14098 28 0 1 chr9 44087839 44090291 -73772336 - L1PA3 LINE L1 0 6155 3705 324 294 98 14 chr9 44090297 44090511 -73772116 + L1MEc LINE L1 3957 4188 -2027 555 264 20 10 chr9 44090513 44090714 -73771913 + L1MEc LINE L1 4525 4727 -1488 30 27 0 0 chr9 44090716 44090753 -73771874 + AT_rich Low_complexity Low_complexity 1 37 0 1321 283 80 40 chr9 44090779 44092010 -73770617 + L1M4 LINE L1 2269 3548 -2598 1960 172 11 16 chr9 44092403 44092780 -73769847 - THE1C LTR MaLR 0 375 1 242 324 81 36 chr9 44092781 44093028 -73769599 - L2 LINE L2 -123 3190 2933 1831 161 66 20 chr9 44093046 44093394 -73769233 - THE1B LTR MaLR 0 364 1 292 336 120 12 chr9 44093397 44093647 -73768980 - L1MEc LINE L1 -6015 381 105 218 95 24 0 chr9 44093655 44093697 -73768930 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 375 282 21 31 chr9 44093803 44094090 -73768537 - L1MEc LINE L1 -4079 2317 2034 358 287 74 37 chr9 44094203 44094419 -73768208 + L1M4 LINE L1 4155 4378 -1768 1062 257 30 116 chr9 44094420 44095310 -73767317 + L1MC4 LINE L1 6811 7550 -258 221 258 0 0 chr9 44095610 44095672 -73766955 + T-rich Low_complexity Low_complexity 1 62 0 215 347 28 0 chr9 44097030 44097102 -73765525 - L2 LINE L2 -47 3266 3193 2406 157 39 2 chr9 44097394 44097809 -73764818 - MER57B LTR ERV1 -4 430 1 792 296 46 32 chr9 44098111 44098456 -73764171 - LTR16B LTR ERVL -6 458 109 3876 166 75 42 chr9 44098463 44099337 -73763290 + MER4D LTR ERV1 1 903 0 237 294 157 50 chr9 44100103 44100365 -73762262 + MLT1J2 LTR MaLR 137 426 -24 361 297 115 33 chr9 44102108 44102290 -73760337 + MLT1J LTR MaLR 36 232 -279 25 65 0 0 chr9 44102754 44102800 -73759827 + AT_rich Low_complexity Low_complexity 1 46 0 528 289 40 32 chr9 44102847 44103124 -73759503 - L1ME3 LINE L1 0 6162 5884 1639 199 3 3 chr9 44103608 44103914 -73758713 - AluJb SINE Alu -6 306 1 229 87 22 22 chr9 44103955 44104001 -73758626 + (TA)n Simple_repeat Simple_repeat 1 46 0 2665 198 23 45 chr9 44104494 44105114 -73757513 + L1MA6 LINE L1 5694 6299 -1 508 132 0 0 chr9 44106385 44106461 -73756166 - AluSc SINE Alu -18 291 216 267 311 47 16 chr9 44107761 44107954 -73754673 + L1M4 LINE L1 3350 3548 -2598 2028 164 11 16 chr9 44108343 44108720 -73753907 - THE1C LTR MaLR 0 375 1 258 320 81 36 chr9 44108721 44108968 -73753659 - L2 LINE L2 -123 3190 2933 1830 161 66 20 chr9 44108986 44109334 -73753293 - THE1B LTR MaLR 0 364 1 270 327 114 24 chr9 44109337 44109591 -73753036 - L1MEc LINE L1 -6015 381 105 185 119 24 0 chr9 44109599 44109641 -73752986 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 393 278 21 21 chr9 44109747 44110031 -73752596 - L1MEc LINE L1 -4079 2317 2034 587 297 73 22 chr9 44110049 44110362 -73752265 + L1M4 LINE L1 4050 4378 -1768 1070 268 47 70 chr9 44110363 44111230 -73751397 + L1MC4 LINE L1 6811 7550 -258 205 274 0 0 chr9 44111523 44111585 -73751042 + T-rich Low_complexity Low_complexity 1 62 0 215 347 28 0 chr9 44112945 44113017 -73749610 - L2 LINE L2 -47 3266 3193 2466 160 39 0 chr9 44113313 44113726 -73748901 - MER57B LTR ERV1 -5 429 1 821 301 47 23 chr9 44114028 44114370 -73748257 - LTR16B LTR ERVL -6 458 109 3914 161 79 42 chr9 44114377 44115248 -73747379 + MER4D LTR ERV1 1 903 0 226 288 158 56 chr9 44116014 44116299 -73746328 + MLT1J2 LTR MaLR 137 450 0 343 313 119 11 chr9 44118022 44118198 -73744429 + MLT1J LTR MaLR 38 232 -279 514 292 40 32 chr9 44118756 44119033 -73743594 - L1ME3 LINE L1 0 6162 5884 1512 196 3 38 chr9 44119517 44119834 -73742793 - AluJb SINE Alu -6 306 1 229 121 61 30 chr9 44119861 44119927 -73742700 + (TA)n Simple_repeat Simple_repeat 2 69 0 2684 196 21 45 chr9 44120415 44121036 -73741591 + L1MA6 LINE L1 5694 6299 -1 25 0 0 0 chr9 44121993 44122018 -73740609 + AT_rich Low_complexity Low_complexity 1 25 0 1987 161 39 18 chr9 44122740 44122827 -73739800 - MER1B DNA MER1_type -2375 337 253 1940 221 39 65 chr9 44122827 44123396 -73739231 + MLT2B3 LTR ERVL 1 554 0 1987 161 39 18 chr9 44123396 44123638 -73738989 - MER1B DNA MER1_type -2459 253 1 857 195 19 123 chr9 44123638 44123946 -73738681 - MER93b LTR ERV1 0 373 98 2642 166 32 28 chr9 44124322 44124500 -73738127 - MER61D LTR ERV1 0 501 325 1906 151 3 0 chr9 44124500 44124791 -73737836 - AluSg SINE Alu -17 293 2 2642 166 32 28 chr9 44124791 44125111 -73737516 - MER61D LTR ERV1 -176 325 1 9200 191 48 41 chr9 44125112 44125384 -73737243 - MER61D-int LTR ERV1 -1 6995 6726 225 0 0 0 chr9 44125384 44125409 -73737218 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 9200 191 48 41 chr9 44125409 44128142 -73734485 - MER61D-int LTR ERV1 -270 6726 4014 2023 142 27 33 chr9 44128142 44128508 -73734119 - THE1B LTR MaLR 0 364 1 9200 191 48 41 chr9 44128508 44129959 -73732668 - MER61D-int LTR ERV1 -2982 4014 2575 2359 62 3 49 chr9 44129959 44130283 -73732344 - AluY SINE Alu -2 309 1 9200 191 48 41 chr9 44130283 44130911 -73731716 - MER61D-int LTR ERV1 -4421 2575 609 946 174 69 140 chr9 44130910 44131323 -73731304 - MER61D-int LTR ERV1 -4742 475 195 * 2604 155 8 2 chr9 44131419 44131818 -73730809 - MER61D LTR ERV1 -100 401 1 22 80 0 0 chr9 44132547 44132597 -73730030 + AT_rich Low_complexity Low_complexity 1 50 0 528 211 0 0 chr9 44133023 44133127 -73729500 - FRAM SINE Alu -10 166 63 283 159 48 16 chr9 44133127 44133190 -73729437 + LTR68 LTR ERV1 23 87 -653 1087 234 47 27 chr9 44133377 44133676 -73728951 + LTR68 LTR ERV1 309 613 -127 28 0 0 0 chr9 44133775 44133803 -73728824 + AT_rich Low_complexity Low_complexity 1 28 0 7573 229 79 64 chr9 44133899 44138544 -73724083 - L1PB3 LINE L1 -11 6859 2153 4646 157 40 35 chr9 44138530 44139524 -73723103 - L1PB3 LINE L1 -5066 1797 799 * 3858 279 39 31 chr9 44139525 44141216 -73721411 - L1PB3 LINE L1 -5223 1640 3 29 70 0 0 chr9 44141340 44141397 -73721230 + AT_rich Low_complexity Low_complexity 1 57 0 230 214 0 0 chr9 44143098 44143140 -73719487 + GA-rich Low_complexity Low_complexity 3 44 0 535 242 81 28 chr9 44143505 44143753 -73718874 + LTR37B LTR ERV1 208 468 0 489 331 68 70 chr9 44143884 44144193 -73718434 + L1MEd LINE L1 447 756 -5363 2117 120 3 3 chr9 44144193 44144493 -73718134 + AluSq SINE Alu 2 301 -12 489 331 68 70 chr9 44144493 44144700 -73717927 + L1MEd LINE L1 756 962 -5157 27 0 0 0 chr9 44144706 44144733 -73717894 + AT_rich Low_complexity Low_complexity 1 27 0 695 291 302 22 chr9 44145327 44145446 -73717181 + L2 LINE L2 1864 1948 -1366 236 71 48 0 chr9 44145446 44145488 -73717139 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 695 291 302 22 chr9 44145488 44145918 -73716709 + L2 LINE L2 1948 2567 -747 237 361 89 19 chr9 44145991 44146204 -73716423 + L2 LINE L2 2996 3223 -90 918 276 85 28 chr9 44146296 44146694 -73715933 + MLT1C LTR MaLR 47 467 0 26 50 0 0 chr9 44146976 44147016 -73715611 + AT_rich Low_complexity Low_complexity 1 40 0 257 348 68 22 chr9 44147078 44147434 -73715193 + L1MC/D LINE L1 5496 5876 -288 31 102 0 0 chr9 44148721 44148829 -73713798 + AT_rich Low_complexity Low_complexity 1 108 0 22 70 0 0 chr9 44149020 44149063 -73713564 + AT_rich Low_complexity Low_complexity 1 43 0 1417 263 55 44 chr9 44149346 44149918 -73712709 + MLT1G LTR MaLR 13 549 0 200 268 12 0 chr9 44151063 44151145 -73711482 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 180 325 168 29 chr9 44151247 44151456 -73711171 - MIR SINE MIR 0 262 25 733 237 81 86 chr9 44151746 44152142 -73710485 - MSTD LTR MaLR 0 396 3 274 243 117 0 chr9 44152144 44152255 -73710372 + MER103 DNA DNA 31 154 -12 21 0 0 0 chr9 44152938 44152959 -73709668 + AT_rich Low_complexity Low_complexity 1 21 0 629 171 0 0 chr9 44152959 44153070 -73709557 - AluJb SINE Alu -14 298 188 1680 205 129 91 chr9 44153072 44153974 -73708653 - LTR1B LTR ERV1 -4 1016 1 1168 182 5 0 chr9 44153988 44154180 -73708447 - AluJb SINE Alu -119 193 1 27 0 0 0 chr9 44154207 44154234 -73708393 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr9 44154438 44154466 -73708161 + AT_rich Low_complexity Low_complexity 1 28 0 48 43 0 0 chr9 44154536 44154605 -73708022 + AT_rich Low_complexity Low_complexity 1 69 0 329 311 69 9 chr9 44154838 44155090 -73707537 + L1ME LINE L1 5272 5539 -582 559 314 102 8 chr9 44155322 44155558 -73707069 + MIR SINE MIR 5 262 0 1007 247 5 0 chr9 44158002 44158225 -73704402 + MER58A DNA MER1_type 1 224 0 325 225 127 70 chr9 44158237 44158379 -73704248 + MER69A DNA AcHobo 20 169 -8 1954 169 28 22 chr9 44158480 44158842 -73703785 + THE1B LTR MaLR 1 364 0 10536 105 32 9 chr9 44158842 44160386 -73702241 + THE1B-int LTR MaLR 1 1580 0 1914 164 39 25 chr9 44160386 44160745 -73701882 + THE1B LTR MaLR 1 364 0 1949 131 13 7 chr9 44162207 44162679 -73699948 - AluSq SINE Alu 0 313 2 22 0 0 0 chr9 44163295 44163317 -73699310 + AT_rich Low_complexity Low_complexity 1 22 0 567 59 12 0 chr9 44163979 44164064 -73698563 - L1PA13 LINE L1 0 6163 6078 440 171 13 0 chr9 44164461 44164537 -73698090 + MER45A DNA AcHobo 101 177 -1 1395 233 86 16 chr9 44164841 44165227 -73697400 + MLT1C LTR MaLR 55 467 0 619 252 0 0 chr9 44165751 44165878 -73696749 + MER45A DNA AcHobo 52 178 0 2328 294 62 58 chr9 44169089 44169518 -73693109 + L2 LINE L2 1098 1524 -1790 766 230 17 65 chr9 44169518 44169748 -73692879 - MER20 DNA MER1_type 0 219 1 2328 294 62 58 chr9 44169748 44170537 -73692090 + L2 LINE L2 1524 2320 -994 878 288 126 18 chr9 44170649 44171038 -73691589 + LTR33A LTR ERVL 87 517 -6 694 294 54 95 chr9 44171038 44171752 -73690875 + L2 LINE L2 2310 3066 -247 194 276 69 0 chr9 44171939 44171997 -73690630 + L3 LINE CR1 932 993 -584 341 317 10 0 chr9 44172114 44172218 -73690409 + MIR SINE MIR 110 214 -48 196 306 111 35 chr9 44172881 44173025 -73689602 + L2 LINE L2 2717 2871 -443 2516 63 0 0 chr9 44173203 44173505 -73689122 + AluY SINE Alu 1 302 -9 277 281 88 38 chr9 44174045 44174205 -73688422 + L1MC5 LINE L1 7697 7864 -97 793 122 139 0 chr9 44376155 44376299 -73486328 - MSTB LTR MaLR -293 164 1 562 257 40 14 chr9 44376328 44376476 -73486151 - L2 LINE L2 0 3272 3121 637 254 17 86 chr9 44376837 44376975 -73485652 + MIR SINE MIR 35 153 -109 2332 71 0 0 chr9 44376975 44377279 -73485348 - AluSx SINE Alu 0 304 1 637 254 17 86 chr9 44377279 44377371 -73485256 + MIR SINE MIR 153 250 -12 3449 258 70 63 chr9 44377733 44378648 -73483979 + HAL1 LINE L1 1 908 -1599 4644 106 21 15 chr9 44378648 44379339 -73483288 + L1MA3 LINE L1 5555 6253 -52 2332 81 10 0 chr9 44379339 44379635 -73482992 + AluSp SINE Alu 2 300 -13 4644 106 21 15 chr9 44379635 44379688 -73482939 + L1MA3 LINE L1 6253 6304 -1 3449 258 70 63 chr9 44379688 44380171 -73482456 + HAL1 LINE L1 908 1414 -1093 2005 165 10 52 chr9 44380171 44380576 -73482051 - MLT1B LTR MaLR 0 390 3 3449 258 70 63 chr9 44380576 44380737 -73481890 + HAL1 LINE L1 1414 1572 -935 986 98 8 0 chr9 44380737 44380869 -73481758 + AluSg SINE Alu 1 133 -177 2218 123 0 0 chr9 44380869 44381179 -73481448 + AluSg SINE Alu 1 310 0 310 278 22 3 chr9 44381459 44381561 -73481066 + MLT1I LTR MaLR 324 403 -6 1626 247 61 52 chr9 44381569 44382188 -73480439 + HAL1 LINE L1 1597 2221 -286 323 119 15 0 chr9 44382471 44382538 -73480089 + (TA)n Simple_repeat Simple_repeat 1 68 0 439 239 67 118 chr9 44382540 44382778 -73479849 - MER102b DNA MER1_type -9 332 107 186 121 35 35 chr9 44382927 44382985 -73479642 + A-rich Low_complexity Low_complexity 4 61 0 276 346 50 0 chr9 44383366 44383467 -73479160 + L1ME1 LINE L1 5947 6052 -114 2343 210 73 10 chr9 44383629 44384233 -73478394 + L1MC4a LINE L1 7162 7803 -5 393 249 110 38 chr9 44385207 44385444 -73477183 - L1ME LINE L1 -322 5799 5546 26 0 0 0 chr9 44385444 44385470 -73477157 + AT_rich Low_complexity Low_complexity 1 26 0 257 73 0 24 chr9 44385631 44385672 -73476955 + (TA)n Simple_repeat Simple_repeat 2 41 0 2130 122 76 15 chr9 44385943 44386286 -73476341 + THE1B LTR MaLR 1 364 0 11164 91 25 15 chr9 44386286 44387850 -73474777 + THE1B-int LTR MaLR 1 1580 0 1977 115 142 16 chr9 44387850 44388173 -73474454 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr9 44388274 44388305 -73474322 + AT_rich Low_complexity Low_complexity 1 31 0 2085 149 0 0 chr9 44388489 44388798 -73473829 - AluSq SINE Alu -4 309 1 22 35 0 0 chr9 44389083 44389112 -73473515 + AT_rich Low_complexity Low_complexity 1 29 0 2217 121 0 0 chr9 44389385 44389682 -73472945 + AluSq SINE Alu 1 297 -16 226 276 26 0 chr9 44389726 44389802 -73472825 + L1MC/D LINE L1 5858 5935 -1873 272 172 0 16 chr9 44390149 44390213 -73472414 + (TA)n Simple_repeat Simple_repeat 2 64 0 1760 177 0 0 chr9 44390221 44390503 -73472124 - AluJo SINE Alu -30 282 1 820 206 28 22 chr9 44390642 44390822 -73471805 + MLT1A1 LTR MaLR 185 365 0 24 0 0 0 chr9 44391686 44391710 -73470917 + AT_rich Low_complexity Low_complexity 1 24 0 378 213 71 50 chr9 44392390 44392494 -73470133 + MER58 DNA MER1_type 38 144 -197 975 156 55 92 chr9 44392494 44392805 -73469822 - MER57A LTR ERV1 0 403 1 417 180 0 133 chr9 44392806 44392934 -73469693 - MER57A-int LTR ERV1 -2 7535 7425 884 199 102 61 chr9 44392934 44393025 -73469602 - LTR54B LTR ERV1 -121 377 291 1911 139 4 0 chr9 44393025 44393291 -73469336 - AluSx SINE Alu -45 267 1 884 199 102 61 chr9 44393291 44393561 -73469066 - LTR54B LTR ERV1 -207 291 1 608 200 25 0 chr9 44393582 44393702 -73468925 + MER58 DNA MER1_type 2294 2416 -4 792 270 63 17 chr9 44393705 44393942 -73468685 + MIR SINE MIR 15 262 0 2288 108 3 0 chr9 44394138 44394445 -73468182 + AluSg SINE Alu 1 308 -2 2141 142 53 44 chr9 44394707 44395158 -73467469 - L1MB8 LINE L1 -9 6169 5715 1287 166 0 18 chr9 44395273 44395490 -73467137 + AluJo SINE Alu 82 294 -18 190 106 21 106 chr9 44396139 44396186 -73466441 + MIR SINE MIR 84 126 -136 1035 249 122 10 chr9 44396218 44396627 -73466000 + L1ME LINE L1 5357 5811 -351 21 57 0 0 chr9 44397074 44397109 -73465518 + AT_rich Low_complexity Low_complexity 1 35 0 187 240 48 67 chr9 44398093 44398197 -73464430 + MIR SINE MIR 70 171 -91 382 310 133 43 chr9 44399212 44399467 -73463160 + L2 LINE L2 2562 2839 -475 263 239 239 0 chr9 44399687 44399779 -73462848 + L2 LINE L2 3199 3312 -1 329 189 124 51 chr9 44400123 44400288 -73462339 + L1ME LINE L1 5638 5809 -361 21 0 0 0 chr9 44400648 44400669 -73461958 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr9 44400808 44400855 -73461772 + AT_rich Low_complexity Low_complexity 1 47 0 2224 104 7 3 chr9 44401235 44401542 -73461085 - AluSc SINE Alu -1 308 1 1958 87 0 0 chr9 44402482 44402735 -73459892 - AluY SINE Alu -18 293 41 274 203 68 14 chr9 44403756 44403830 -73458797 + L2 LINE L2 3232 3309 -4 1472 145 4 0 chr9 44404856 44405084 -73457543 + MER2 DNA MER2_type 1 229 -116 1902 131 4 4 chr9 44405935 44406210 -73456417 + AluSx SINE Alu 1 275 -37 372 119 0 0 chr9 44406214 44406273 -73456354 + (CA)n Simple_repeat Simple_repeat 2 60 0 730 159 30 8 chr9 44406335 44406467 -73456160 + MER5A DNA MER1_type 32 166 -23 691 183 0 0 chr9 44406471 44406586 -73456041 - Tigger1 DNA MER2_type 0 2418 2304 897 153 108 13 chr9 44406590 44406747 -73455880 + FRAM SINE Alu 1 169 -7 12936 93 37 8 chr9 44406747 44408053 -73454574 - Tigger1 DNA MER2_type -109 2309 929 2102 96 4 4 chr9 44408053 44408363 -73454264 + AluSg SINE Alu 1 310 0 12936 93 37 8 chr9 44408363 44408922 -73453705 - Tigger1 DNA MER2_type -1489 929 388 762 234 101 54 chr9 44408925 44409241 -73453386 - HAL1b LINE L1 -579 769 439 722 249 144 76 chr9 44409240 44409766 -73452861 - HAL1b LINE L1 -710 638 77 * 189 132 0 0 chr9 44410793 44410831 -73451796 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 1237 164 28 5 chr9 44410865 44411078 -73451549 - MER20 DNA MER1_type 0 219 2 2269 106 0 28 chr9 44412660 44412981 -73449646 - AluSx SINE Alu 0 312 1 31 44 0 0 chr9 44413895 44413940 -73448687 + AT_rich Low_complexity Low_complexity 1 45 0 785 65 47 0 chr9 44414625 44414732 -73447895 + L1PA10 LINE L1 6054 6165 -3 287 57 0 0 chr9 44414805 44414840 -73447787 + U2 snRNA snRNA 1 35 -153 2233 111 3 0 chr9 44415151 44415448 -73447179 - AluSx SINE Alu -14 298 1 1351 114 126 15 chr9 44417061 44417332 -73445295 - L1MA9 LINE L1 -5 6307 6007 27 0 0 0 chr9 44417507 44417534 -73445093 + AT_rich Low_complexity Low_complexity 1 27 0 281 164 91 0 chr9 44418399 44418454 -73444173 - L2 LINE L2 -4 3309 3250 339 25 0 0 chr9 44420459 44420499 -73442128 + (TA)n Simple_repeat Simple_repeat 1 40 0 2071 77 55 4 chr9 44420518 44420671 -73441956 - AluSx SINE Alu -24 288 113 311 0 26 0 chr9 44420671 44420710 -73441917 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2071 77 55 4 chr9 44420710 44420829 -73441798 - AluSx SINE Alu -199 113 2 793 176 0 0 chr9 44421220 44421345 -73441282 - FLAM_A SINE Alu -8 125 1 21 0 0 0 chr9 44422351 44422372 -73440255 + AT_rich Low_complexity Low_complexity 1 21 0 581 246 181 0 chr9 44423040 44423255 -73439372 + MIR SINE MIR 9 262 0 360 0 0 0 chr9 44425187 44425227 -73437400 + (T)n Simple_repeat Simple_repeat 1 40 0 2523 68 0 0 chr9 44426239 44426548 -73436079 + AluY SINE Alu 1 309 -2 23 33 0 0 chr9 44426599 44426629 -73435998 + AT_rich Low_complexity Low_complexity 1 30 0 206 262 206 40 chr9 44426927 44427053 -73435574 - L2 LINE L2 -4 3268 3122 230 320 39 62 chr9 44427140 44427268 -73435359 - L2 LINE L2 -200 3072 2948 192 328 144 8 chr9 44427334 44427459 -73435168 - L2 LINE L2 -456 2858 2717 192 77 0 0 chr9 44428065 44428091 -73434536 + (T)n Simple_repeat Simple_repeat 1 26 0 236 54 54 0 chr9 44428583 44428620 -73434007 + T-rich Low_complexity Low_complexity 2 40 0 1735 121 12 4 chr9 44428642 44428891 -73433736 - AluSx SINE Alu -27 285 35 2295 78 10 20 chr9 44429473 44429779 -73432848 - AluSc SINE Alu -6 303 1 25 0 0 0 chr9 44430922 44430947 -73431680 + AT_rich Low_complexity Low_complexity 1 25 0 33225 34 7 2 chr9 44430964 44435827 -73426800 - L1PA3 LINE L1 0 6155 1267 437 162 0 0 chr9 44435930 44436004 -73426623 - AluJ/FLAM SINE Alu -238 74 1 259 145 72 0 chr9 44436107 44436176 -73426451 + (TA)n Simple_repeat Simple_repeat 1 74 0 192 268 113 14 chr9 44436445 44436516 -73426111 - MIR SINE MIR -52 210 133 983 260 45 4 chr9 44436630 44436872 -73425755 - MIR SINE MIR -10 252 1 23 0 0 0 chr9 44437502 44437525 -73425102 + AT_rich Low_complexity Low_complexity 1 23 0 279 180 0 0 chr9 44438086 44438136 -73424491 - L2 LINE L2 -9 3304 3255 300 314 57 93 chr9 44438430 44438816 -73423811 - L2 LINE L2 -9 3263 2892 767 339 25 7 chr9 44438896 44439176 -73423451 + MLT1K LTR MaLR 2 286 -302 859 241 50 6 chr9 44439211 44439529 -73423098 + HAL1 LINE L1 638 1000 -1507 3436 186 30 16 chr9 44439532 44440227 -73422400 + L1ME1 LINE L1 5457 6161 -5 2443 237 152 26 chr9 44440237 44441185 -73421442 + HAL1 LINE L1 993 2059 -448 1970 152 3 0 chr9 44441516 44441818 -73420809 + AluSg SINE Alu 1 303 -7 225 217 9 94 chr9 44442015 44442121 -73420506 - LTR37A LTR ERV1 -89 337 241 21 0 0 0 chr9 44442122 44442143 -73420484 + AT_rich Low_complexity Low_complexity 1 21 0 965 211 53 4 chr9 44442285 44442439 -73420188 - AluJo SINE Alu -26 286 116 207 0 0 0 chr9 44442439 44442462 -73420165 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 965 211 53 4 chr9 44442462 44442534 -73420093 - AluJo SINE Alu -196 116 49 620 223 0 23 chr9 44442598 44442728 -73419899 - FLAM_C SINE Alu -6 127 1 1035 257 104 20 chr9 44442819 44443343 -73419284 + L2 LINE L2 2541 3097 -216 1301 242 20 3 chr9 44443347 44443645 -73418982 - AluJo SINE Alu -9 303 1 1497 179 22 63 chr9 44443654 44444017 -73418610 - MLT1D LTR MaLR -8 497 150 569 199 15 22 chr9 44444020 44444156 -73418471 + FLAM_C SINE Alu 9 143 0 1278 237 7 29 chr9 44444158 44444466 -73418161 + AluJo SINE Alu 1 301 -11 2308 257 50 57 chr9 44444561 44444984 -73417643 + MER21B LTR ERV1 19 443 -420 1455 174 0 100 chr9 44444984 44445324 -73417303 - AluJb SINE Alu -5 307 2 2308 257 50 57 chr9 44445324 44445405 -73417222 + MER21B LTR ERV1 443 523 -340 1506 189 32 11 chr9 44445405 44445686 -73416941 + AluJo SINE Alu 12 298 -14 2308 257 50 57 chr9 44445686 44445973 -73416654 + MER21B LTR ERV1 523 806 -57 1784 156 3 7 chr9 44446523 44446811 -73415816 + AluSx SINE Alu 4 290 -22 1790 152 7 19 chr9 44446965 44447275 -73415352 - AluSg1 SINE Alu -3 306 1 1505 209 18 6 chr9 44447436 44447775 -73414852 + L1M3 LINE L1 5480 5822 -361 496 235 0 0 chr9 44447782 44447884 -73414743 + AluJ/FLAM SINE Alu 1 102 -210 5588 239 68 26 chr9 44448429 44450835 -73411792 + L1M3 LINE L1 3097 5610 -570 274 157 22 101 chr9 44451643 44451732 -73410895 + L1MA9 LINE L1 6126 6207 -105 588 217 26 26 chr9 44451733 44451885 -73410742 + L1M3 LINE L1 5442 5593 -587 * 7639 211 12 93 chr9 44451876 44453526 -73409101 + L1 LINE L1 2873 4431 -1715 1088 163 0 0 chr9 44453526 44453698 -73408929 + AluSp SINE Alu 136 307 -6 7639 211 12 93 chr9 44453698 44454429 -73408198 + L1 LINE L1 4431 5219 -927 369 120 7 63 chr9 44454437 44454579 -73408048 + (CCCTAA)n Simple_repeat Simple_repeat 2 135 0 311 128 0 47 chr9 44454622 44454708 -73407919 + (CCCTAA)n Simple_repeat Simple_repeat 2 83 0 3267 156 8 14 chr9 44454852 44455487 -73407140 - TAR1 Satellite telomeric -43 2068 1438 1327 212 34 31 chr9 44456803 44457096 -73405531 + AluJo SINE Alu 3 296 -6 3056 215 20 13 chr9 44457209 44458338 -73404289 + L1MA5 LINE L1 4808 5946 -354 1142 236 27 8 chr9 44458339 44458598 -73404029 + AluJo SINE Alu 1 264 -48 802 148 89 0 chr9 44458702 44458871 -73403756 + L1MA5 LINE L1 6111 6294 -6 665 300 102 20 chr9 44458905 44459282 -73403345 + MLT1G1 LTR MaLR 79 561 -34 2380 198 49 43 chr9 44460620 44461675 -73400952 + L1MB8 LINE L1 4771 5836 -342 1995 133 101 5 chr9 44461703 44462078 -73400549 + MER61C LTR ERV1 14 424 -10 1200 224 67 12 chr9 44462082 44462412 -73400215 + L1MB8 LINE L1 5826 6173 -5 1213 205 110 20 chr9 44462647 44463003 -73399624 + MER4E LTR ERV1 1 388 -391 3050 139 26 0 chr9 44463099 44463589 -73399038 + L1PA10 LINE L1 5655 6157 -11 1938 152 21 0 chr9 44463973 44464263 -73398364 - AluSq SINE Alu -15 298 3 23 33 0 0 chr9 44464847 44464877 -73397750 + AT_rich Low_complexity Low_complexity 1 30 0 254 197 49 16 chr9 44464884 44464945 -73397682 - MER34C LTR ERV1 -100 485 423 1863 125 68 0 chr9 44465213 44465494 -73397133 + AluSg SINE Alu 1 300 -10 2099 123 3 10 chr9 44466947 44467257 -73395370 - AluSg SINE Alu 0 310 3 2158 142 0 0 chr9 44467608 44467918 -73394709 - AluSx SINE Alu -1 311 2 1302 162 0 78 chr9 44468342 44468613 -73394014 - AluJb SINE Alu -25 287 38 187 250 50 0 chr9 44468635 44468695 -73393932 + MIR SINE MIR 198 260 -2 1879 205 80 36 chr9 44469703 44470201 -73392426 + L1MB8 LINE L1 5653 6172 -6 23 33 0 0 chr9 44471040 44471070 -73391557 + AT_rich Low_complexity Low_complexity 1 30 0 416 316 51 13 chr9 44471283 44471441 -73391186 + L2 LINE L2 2722 2885 -429 29 28 0 0 chr9 44471736 44471772 -73390855 + AT_rich Low_complexity Low_complexity 1 36 0 987 252 36 7 chr9 44472159 44472433 -73390194 - L1MB7 LINE L1 0 6184 5903 22 0 0 0 chr9 44475405 44475427 -73387200 + AT_rich Low_complexity Low_complexity 1 22 0 462 274 85 55 chr9 44475495 44475745 -73386882 - L1P4 LINE L1 -478 5643 5396 1985 147 0 3 chr9 44475859 44476165 -73386462 + AluSq SINE Alu 1 305 -8 30 59 0 0 chr9 44476351 44476402 -73386225 + AT_rich Low_complexity Low_complexity 1 51 0 605 79 22 0 chr9 44478168 44478257 -73384370 - L1PA3 LINE L1 -2 6153 6063 27 49 0 0 chr9 44480246 44480287 -73382340 + AT_rich Low_complexity Low_complexity 1 41 0 1354 259 31 0 chr9 44480984 44481278 -73381349 + AluJo SINE Alu 1 303 -9 195 225 0 0 chr9 44481499 44481539 -73381088 - L2 LINE L2 -12 3301 3262 1972 156 7 0 chr9 44481821 44482122 -73380505 - AluSx SINE Alu -9 303 1 1993 131 7 0 chr9 44482591 44482874 -73379753 - AluSp SINE Alu -27 286 2 24 77 0 0 chr9 44484087 44484139 -73378488 + AT_rich Low_complexity Low_complexity 1 52 0 22 56 0 0 chr9 44484483 44484519 -73378108 + AT_rich Low_complexity Low_complexity 1 36 0 1922 162 0 0 chr9 44484631 44484934 -73377693 + AluSx SINE Alu 6 308 -4 239 217 0 0 chr9 44485921 44485967 -73376660 + (CA)n Simple_repeat Simple_repeat 1 46 0 278 183 195 12 chr9 44488126 44488208 -73374419 + MER5A DNA MER1_type 10 106 -83 6759 66 9 23 chr9 44488702 44490340 -73372287 - SVA Other Other -727 1386 1 387 73 0 0 chr9 44490350 44490405 -73372222 + (GGGAGA)n Simple_repeat Simple_repeat 1 55 0 2358 79 0 0 chr9 44490810 44491101 -73371526 - AluY SINE Alu -20 291 1 1400 216 10 34 chr9 44491297 44491593 -73371034 - AluJo SINE Alu -23 289 1 1555 209 0 7 chr9 44491627 44491909 -73370718 + AluJb SINE Alu 3 282 -30 6066 60 1 3 chr9 44492298 44493070 -73369557 + L1PA5 LINE L1 5376 6146 -8 1175 227 30 54 chr9 44493444 44493739 -73368888 + AluJb SINE Alu 13 300 -12 1976 138 0 28 chr9 44493910 44494248 -73368379 - AluSx SINE Alu 0 331 2 580 212 0 0 chr9 44494502 44494601 -73368026 - FLAM_A SINE Alu -43 99 1 204 324 139 9 chr9 44496940 44497048 -73365579 + MIR SINE MIR 20 141 -121 224 378 81 14 chr9 44497654 44497876 -73364751 + MIR SINE MIR 20 256 -6 10282 28 2 0 chr9 44497896 44499895 -73362732 - L1PA2 LINE L1 0 6155 4155 595 242 0 24 chr9 44500045 44500169 -73362458 + FLAM_A SINE Alu 6 126 -16 207 88 0 0 chr9 44500200 44500234 -73362393 + (TTG)n Simple_repeat Simple_repeat 2 35 0 636 143 52 39 chr9 44500624 44500778 -73361849 - MER21A LTR ERV1 -29 902 747 717 164 45 0 chr9 44500784 44500918 -73361709 + Tigger7 DNA MER2_type 2348 2487 0 2249 154 9 42 chr9 44501943 44502377 -73360250 + L1MC1 LINE L1 5914 6333 0 2083 135 0 7 chr9 44502385 44502681 -73359946 + AluSx SINE Alu 1 294 -18 23 0 0 0 chr9 44502723 44502746 -73359881 + AT_rich Low_complexity Low_complexity 1 23 0 1970 169 3 0 chr9 44502749 44503057 -73359570 + AluSq SINE Alu 1 309 -4 27 0 0 0 chr9 44503178 44503205 -73359422 + AT_rich Low_complexity Low_complexity 1 27 0 1887 202 52 9 chr9 44503618 44504059 -73358568 + MER68 LTR ERV1 1 460 -102 560 29 0 0 chr9 44504077 44504147 -73358480 - L1P LINE L1 -945 5201 5132 2205 38 0 0 chr9 44504147 44504462 -73358165 + L1PA2 LINE L1 5876 6195 0 482 163 12 0 chr9 44504467 44504547 -73358080 + MER68 LTR ERV1 481 561 -1 1367 214 13 29 chr9 44504908 44505031 -73357596 + AluJb SINE Alu 1 124 -188 191 61 30 0 chr9 44505031 44505064 -73357563 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1367 214 13 29 chr9 44505064 44505248 -73357379 + AluJb SINE Alu 124 303 -9 880 187 0 0 chr9 44505283 44505422 -73357205 + FAM SINE Alu 22 160 -25 244 291 0 0 chr9 44505724 44505779 -73356848 + (TG)n Simple_repeat Simple_repeat 2 56 0 1918 198 33 12 chr9 44506032 44506457 -73356170 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr9 44506726 44506748 -73355879 + AT_rich Low_complexity Low_complexity 1 22 0 210 289 97 26 chr9 44507287 44507401 -73355226 + MIR SINE MIR 94 215 -47 522 0 0 0 chr9 44507620 44507678 -73354949 + (TA)n Simple_repeat Simple_repeat 1 58 0 472 206 10 0 chr9 44508109 44508206 -73354421 - U6 snRNA snRNA -1 106 9 637 169 127 0 chr9 44509166 44509317 -73353310 + FLAM_C SINE Alu 1 166 0 195 184 0 0 chr9 44510125 44510163 -73352464 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2287 111 0 0 chr9 44510212 44510510 -73352117 + AluSc SINE Alu 1 298 -11 190 257 129 14 chr9 44511197 44511267 -73351360 + L2 LINE L2 3138 3215 -57 21 0 0 0 chr9 44511975 44511996 -73350631 + AT_rich Low_complexity Low_complexity 1 21 0 376 255 83 21 chr9 44512376 44512611 -73350016 - Charlie8 DNA MER1_type -990 1427 81 21 57 0 0 chr9 44512833 44512868 -73349759 + AT_rich Low_complexity Low_complexity 1 35 0 267 168 274 124 chr9 44513504 44513617 -73349010 - FLAM_A SINE Alu 0 133 4 226 282 129 48 chr9 44513632 44513756 -73348871 + MER5A DNA MER1_type 56 189 0 442 295 140 47 chr9 44515429 44515645 -73346982 + MIR SINE MIR 4 236 -26 1713 182 0 7 chr9 44515653 44515949 -73346678 - AluJo SINE Alu -18 294 1 352 246 78 42 chr9 44516048 44516190 -73346437 + MER104 DNA Tc2 34 180 0 219 217 0 50 chr9 44516637 44516697 -73345930 + L2 LINE L2 3216 3272 0 31 58 0 0 chr9 44516772 44516824 -73345803 + AT_rich Low_complexity Low_complexity 1 52 0 332 319 42 7 chr9 44517323 44517467 -73345160 - L1ME LINE L1 -445 5676 5528 482 66 11 33 chr9 44517686 44517777 -73344850 + (TA)n Simple_repeat Simple_repeat 1 89 0 2194 115 0 0 chr9 44517805 44518109 -73344518 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr9 44518158 44518186 -73344441 + AT_rich Low_complexity Low_complexity 1 28 0 326 299 91 110 chr9 44519683 44520291 -73342336 - L1M2 LINE L1 -5704 1145 550 1128 261 48 52 chr9 44520681 44521259 -73341368 - L1ME2 LINE L1 -134 6030 5455 2168 106 0 53 chr9 44521576 44521898 -73340729 + AluSp SINE Alu 1 305 -8 1650 146 12 0 chr9 44521954 44522200 -73340427 - AluSx SINE Alu -19 293 45 273 57 0 0 chr9 44522331 44522366 -73340261 + (CA)n Simple_repeat Simple_repeat 1 35 0 319 272 165 87 chr9 44523116 44523509 -73339118 + L1M2 LINE L1 472 895 -5954 247 95 0 111 chr9 44524545 44524608 -73338019 - Alu SINE Alu 0 300 245 3327 198 32 56 chr9 44525013 44525984 -73336643 - L1MC2 LINE L1 -912 5234 4287 1003 171 46 16 chr9 44525990 44526290 -73336337 + L1MC2 LINE L1 5246 5979 -214 * 11961 27 0 0 chr9 44526275 44528544 -73334083 + L1PA2 LINE L1 3906 6175 0 881 213 107 0 chr9 44528546 44528818 -73333809 + L1MC2 LINE L1 6043 6343 -1 2802 190 50 78 chr9 44528840 44529542 -73333085 + L1MB7 LINE L1 5317 5990 -194 907 173 0 42 chr9 44529542 44529710 -73332917 + FRAM SINE Alu 1 161 -5 2802 190 50 78 chr9 44529710 44529890 -73332737 + L1MB7 LINE L1 5990 6174 -10 4807 97 50 26 chr9 44530830 44531632 -73330995 - Tigger4(Zombi) DNA MER2_type 0 2731 1911 2332 175 119 0 chr9 44531635 44532104 -73330523 - Tigger4(Zombi) DNA MER2_type -2205 526 2 339 158 0 0 chr9 44532057 44532114 -73330513 + MER46A DNA MER2_type 97 153 -83 * 211 293 0 53 chr9 44534370 44534445 -73328182 + L2 LINE L2 3182 3252 -20 1389 150 55 20 chr9 44534739 44534993 -73327634 + AluSx SINE Alu 33 295 -17 405 265 145 9 chr9 44535009 44535048 -73327579 + L1MC4 LINE L1 7609 7641 -401 2201 105 0 23 chr9 44535048 44535352 -73327275 - AluY SINE Alu -14 297 1 405 265 145 9 chr9 44535352 44535493 -73327134 + L1MC4 LINE L1 7641 7762 -280 351 0 0 0 chr9 44535493 44535532 -73327095 + (TG)n Simple_repeat Simple_repeat 2 40 0 405 265 145 9 chr9 44535532 44535637 -73326990 + L1MC4 LINE L1 7762 8042 0 184 346 77 31 chr9 44535637 44535767 -73326860 + MIR3 SINE MIR 12 147 -61 932 166 113 46 chr9 44537904 44538206 -73324421 - MER33 DNA MER1_type -2 322 1 22 0 0 0 chr9 44538361 44538383 -73324244 + AT_rich Low_complexity Low_complexity 1 22 0 228 117 65 65 chr9 44538728 44538805 -73323822 + AluJb SINE Alu 41 117 -185 31 0 0 0 chr9 44538850 44538881 -73323746 + AT_rich Low_complexity Low_complexity 1 31 0 1325 183 28 58 chr9 44539773 44540169 -73322458 - MLT2B3 LTR ERVL 0 554 183 2097 159 119 15 chr9 44540193 44541879 -73320748 - SATR1 Satellite Satellite 0 2252 45 2488 72 0 0 chr9 44541879 44542183 -73320444 + AluY SINE Alu 1 304 -7 2097 159 119 15 chr9 44542183 44542234 -73320393 - SATR1 Satellite Satellite -2207 45 1 1596 189 128 8 chr9 44545148 44545625 -73317002 - SATR1 Satellite Satellite 0 534 1 1953 172 98 33 chr9 44545655 44546732 -73315895 + SATR1 Satellite Satellite 1 1147 -1 2064 180 99 14 chr9 44546759 44547470 -73315157 + SATR1 Satellite Satellite 1 771 0 2207 176 111 4 chr9 44547496 44548997 -73313630 - SATR1 Satellite Satellite -110 1660 1 1248 195 75 0 chr9 44548997 44549345 -73313282 + L1PA15 LINE L1 4964 5337 -809 378 125 411 0 chr9 44549345 44549457 -73313170 + LTR1B LTR ERV1 427 584 -242 1043 144 53 0 chr9 44549462 44549650 -73312977 + L1PA15 LINE L1 5347 5544 -621 2694 191 59 28 chr9 44549650 44550404 -73312223 + LTR1B LTR ERV1 1 785 0 3768 141 8 10 chr9 44550407 44551026 -73311601 + L1PA15 LINE L1 5544 6161 -4 251 333 44 5 chr9 44551047 44551251 -73311376 + L1ME LINE L1 5646 5857 -264 25 65 0 0 chr9 44551515 44551561 -73311066 + AT_rich Low_complexity Low_complexity 1 46 0 336 182 13 13 chr9 44552523 44552600 -73310027 - L1ME1 LINE L1 -4 6162 6086 1221 271 75 35 chr9 44552608 44552855 -73309772 - L1M4 LINE L1 -2284 3862 3627 2233 108 3 3 chr9 44552855 44553161 -73309466 - AluSp SINE Alu -7 306 1 1221 271 75 35 chr9 44553161 44553207 -73309420 - L1M4 LINE L1 -2519 3627 3584 1531 214 58 0 chr9 44553207 44553552 -73309075 - MER47A DNA MER2_type -1 365 1 1221 271 75 35 chr9 44553552 44554265 -73308362 - L1M4 LINE L1 -2562 3584 2814 * 3023 228 120 10 chr9 44554262 44554826 -73307801 - L1MC4 LINE L1 -364 7678 7178 2086 123 3 3 chr9 44554826 44555118 -73307509 - AluSx SINE Alu -20 292 1 3023 228 120 10 chr9 44555118 44555558 -73307069 - L1MC4 LINE L1 -864 7178 6563 26 64 0 0 chr9 44556260 44556307 -73306320 + AT_rich Low_complexity Low_complexity 1 47 0 1976 142 7 0 chr9 44556441 44556762 -73305865 + AluSx SINE Alu 1 323 0 29 59 0 15 chr9 44557019 44557059 -73305568 + AT_rich Low_complexity Low_complexity 1 41 -26 525 144 10 10 chr9 44557059 44557156 -73305471 + L1PB1 LINE L1 6053 6149 -2 29 59 0 15 chr9 44557156 44557183 -73305444 + AT_rich Low_complexity Low_complexity 41 67 0 1497 225 3 7 chr9 44557431 44557729 -73304898 + AluJb SINE Alu 1 297 -15 415 189 0 0 chr9 44557729 44557803 -73304824 + L1MB8 LINE L1 5495 5568 -598 483 259 0 0 chr9 44557845 44557953 -73304674 - FLAM_C SINE Alu -35 108 1 1914 217 51 60 chr9 44557954 44558512 -73304115 + L1MB8 LINE L1 5557 6111 -67 1474 229 0 0 chr9 44558512 44558818 -73303809 - AluJb SINE Alu -6 306 1 1914 217 51 60 chr9 44558818 44558881 -73303746 + L1MB8 LINE L1 6111 6173 -5 1985 141 0 7 chr9 44558901 44559200 -73303427 + AluSx SINE Alu 6 302 -10 1412 210 3 23 chr9 44559215 44559515 -73303112 + AluJo SINE Alu 11 304 -8 1359 109 78 11 chr9 44559848 44562726 -73299901 + GSATII Satellite centromeric 1 3069 -32 1167 154 5 0 chr9 44564469 44564670 -73297957 + MER2 DNA MER2_type 28 229 -116 1919 127 4 4 chr9 44565524 44565799 -73296828 + AluSx SINE Alu 1 275 -37 336 102 0 0 chr9 44565803 44565852 -73296775 + (CA)n Simple_repeat Simple_repeat 2 50 0 754 152 30 8 chr9 44565914 44566046 -73296581 + MER5A DNA MER1_type 32 166 -23 652 183 0 0 chr9 44566050 44566165 -73296462 - Tigger1 DNA MER2_type 0 2418 2304 883 136 136 13 chr9 44566169 44566323 -73296304 + FRAM SINE Alu 1 170 -6 11874 96 47 8 chr9 44566323 44567607 -73295020 - Tigger1 DNA MER2_type -109 2309 928 2071 103 4 4 chr9 44567607 44567941 -73294686 + AluSg SINE Alu 1 334 0 11874 96 47 8 chr9 44567941 44568495 -73294132 - Tigger1 DNA MER2_type -1490 928 397 722 228 92 53 chr9 44568538 44568819 -73293808 - HAL1b LINE L1 -618 730 439 587 247 149 75 chr9 44568818 44569341 -73293286 - HAL1b LINE L1 -710 638 77 * 314 171 43 0 chr9 44569430 44569547 -73293080 + (TTAA)n Simple_repeat Simple_repeat 3 124 0 189 132 0 0 chr9 44570466 44570504 -73292123 + (TTTTTA)n Simple_repeat Simple_repeat 5 42 0 1250 164 28 5 chr9 44570538 44570752 -73291875 - MER20 DNA MER1_type 0 219 1 2206 114 0 28 chr9 44572327 44572644 -73289983 - AluSx SINE Alu -4 308 1 31 44 0 0 chr9 44573556 44573601 -73289026 + AT_rich Low_complexity Low_complexity 1 45 0 786 65 47 0 chr9 44574286 44574393 -73288234 + L1PA10 LINE L1 6054 6165 -3 264 86 0 0 chr9 44574466 44574501 -73288126 + U2 snRNA snRNA 1 35 -153 2278 108 3 0 chr9 44574812 44575108 -73287519 - AluSx SINE Alu -15 297 1 202 151 0 75 chr9 44576581 44576634 -73285993 + CT-rich Low_complexity Low_complexity 4 52 0 1268 120 120 21 chr9 44576722 44577005 -73285622 - L1MA9 LINE L1 -5 6307 5997 27 0 0 0 chr9 44577168 44577195 -73285432 + AT_rich Low_complexity Low_complexity 1 27 0 283 164 91 0 chr9 44578057 44578112 -73284515 - L2 LINE L2 -4 3309 3250 36 23 0 0 chr9 44580115 44580158 -73282469 + AT_rich Low_complexity Low_complexity 1 43 0 1932 68 42 113 chr9 44580158 44580468 -73282159 - AluSx SINE Alu -24 288 1 762 192 0 0 chr9 44580858 44580983 -73281644 - FLAM_A SINE Alu -8 125 1 564 251 181 0 chr9 44582675 44582890 -73279737 + MIR SINE MIR 9 262 0 243 0 0 0 chr9 44584821 44584848 -73277779 + (T)n Simple_repeat Simple_repeat 1 27 0 2608 50 0 0 chr9 44585860 44586162 -73276465 + AluY SINE Alu 1 302 -9 22 35 0 0 chr9 44586211 44586240 -73276387 + AT_rich Low_complexity Low_complexity 1 29 0 230 320 39 62 chr9 44586751 44586879 -73275748 - L2 LINE L2 -200 3072 2948 186 333 105 9 chr9 44586945 44587059 -73275568 - L2 LINE L2 -456 2858 2734 183 80 0 0 chr9 44587671 44587696 -73274931 + (T)n Simple_repeat Simple_repeat 1 25 0 257 27 54 0 chr9 44588177 44588214 -73274413 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 1725 118 72 4 chr9 44588236 44588499 -73274128 - AluSx SINE Alu -27 285 5 2245 82 10 20 chr9 44589063 44589367 -73273260 - AluSc SINE Alu -8 301 1 203 171 0 0 chr9 44590506 44590547 -73272080 + T-rich Low_complexity Low_complexity 1 41 0 42106 36 21 8 chr9 44590553 44596626 -73266001 - L1PA3 LINE L1 0 6155 1 2708 143 17 2 chr9 44596736 44597203 -73265424 - L1MB1 LINE L1 0 6168 5695 1886 164 10 13 chr9 44597347 44597657 -73264970 - AluJo SINE Alu -1 311 3 194 222 143 0 chr9 44597938 44598001 -73264626 - MIR SINE MIR -113 149 78 1649 203 7 3 chr9 44598880 44599186 -73263441 - AluJb SINE Alu -5 307 1 22 0 0 0 chr9 44599191 44599213 -73263414 + AT_rich Low_complexity Low_complexity 1 22 0 1628 169 17 24 chr9 44599213 44599508 -73263119 - AluJo SINE Alu -18 294 2 2769 16 0 3 chr9 44599890 44600201 -73262426 + AluYa5 SINE Alu 1 310 -1 243 0 0 0 chr9 44600471 44600498 -73262129 + (T)n Simple_repeat Simple_repeat 1 27 0 235 262 115 0 chr9 44602779 44602840 -73259787 + L2 LINE L2 3204 3271 -1 254 241 129 69 chr9 44602845 44602961 -73259666 + MER5B DNA MER1_type 3 125 -53 353 264 28 51 chr9 44602961 44603139 -73259488 - L1MC5 LINE L1 -25 7936 7763 229 220 51 17 chr9 44603152 44603211 -73259416 - L1MC5 LINE L1 -51 7910 7850 961 220 117 69 chr9 44603417 44603854 -73258773 - MER39 LTR ERV1 0 707 250 244 273 34 34 chr9 44603831 44603919 -73258708 - LTR48B LTR ERV1 -556 88 1 * 2085 105 0 66 chr9 44604029 44604362 -73258265 - AluSx SINE Alu -1 311 1 359 294 73 0 chr9 44604421 44604530 -73258097 - L1ME3 LINE L1 -81 6081 5965 1783 178 0 14 chr9 44605869 44606162 -73256465 + AluJb SINE Alu 1 289 -23 325 153 333 0 chr9 44606473 44606545 -73256082 + Tigger3(Golem) DNA MER2_type 2 97 -2932 * 1269 126 10 24 chr9 44606543 44606750 -73255877 + Tigger3(Golem) DNA MER2_type 2811 3014 -15 2506 138 25 11 chr9 44606762 44607211 -73255416 - L1MB1 LINE L1 0 6168 5714 202 151 0 75 chr9 44607434 44607487 -73255140 + CT-rich Low_complexity Low_complexity 4 52 0 1357 117 120 21 chr9 44607575 44607858 -73254769 - L1MA9 LINE L1 -5 6307 5997 27 0 0 0 chr9 44608021 44608048 -73254579 + AT_rich Low_complexity Low_complexity 1 27 0 281 164 91 0 chr9 44608910 44608965 -73253662 - L2 LINE L2 -4 3309 3250 36 23 0 0 chr9 44610968 44611011 -73251616 + AT_rich Low_complexity Low_complexity 1 43 0 1932 68 42 113 chr9 44611011 44611321 -73251306 - AluSx SINE Alu -24 288 1 762 192 0 0 chr9 44611711 44611836 -73250791 - FLAM_A SINE Alu -8 125 1 551 250 184 0 chr9 44613532 44613744 -73248883 + MIR SINE MIR 12 262 0 8894 166 46 6 chr9 44616711 44619905 -73242722 + L1PB1 LINE L1 1087 4557 -2305 6360 126 18 5 chr9 44619911 44621372 -73241255 + L1PB1 LINE L1 5392 6867 0 289 322 66 46 chr9 44621998 44622150 -73240477 + MIR SINE MIR 86 240 -22 566 106 18 46 chr9 44624890 44625004 -73237623 - L1MC3 LINE L1 -488 7507 7189 233 279 0 0 chr9 44625004 44625065 -73237562 - MLT1F1 LTR MaLR -443 124 64 1232 143 77 44 chr9 44625072 44625344 -73237283 - L1MC3 LINE L1 -666 7119 6839 187 275 0 0 chr9 44625545 44625585 -73237042 - MIR SINE MIR -171 91 52 22 70 0 0 chr9 44625947 44625990 -73236637 + AT_rich Low_complexity Low_complexity 1 43 0 2566 55 7 0 chr9 44626237 44626546 -73236081 + AluY SINE Alu 1 311 0 741 122 52 0 chr9 44626563 44626678 -73235949 + FLAM_A SINE Alu 1 121 -12 379 219 219 28 chr9 44626779 44626994 -73235633 - MER112 DNA MER1_type 0 256 1 226 213 0 0 chr9 44627945 44627992 -73234635 + GA-rich Low_complexity Low_complexity 1 47 0 225 0 0 0 chr9 44629324 44629349 -73233278 + (TA)n Simple_repeat Simple_repeat 1 25 0 180 299 43 34 chr9 44631037 44631154 -73231473 - MIR SINE MIR -70 192 75 742 237 68 58 chr9 44633117 44633249 -73229378 - L1MC5 LINE L1 -135 7826 7697 728 195 0 0 chr9 44633249 44633377 -73229250 + FLAM_C SINE Alu 1 128 -5 742 237 68 58 chr9 44633377 44633658 -73228969 - L1MC5 LINE L1 -264 7697 7409 21 82 0 0 chr9 44633887 44633936 -73228691 + AT_rich Low_complexity Low_complexity 1 49 0 28 29 0 0 chr9 44634888 44634923 -73227704 + AT_rich Low_complexity Low_complexity 1 35 0 896 269 0 0 chr9 44635044 44635256 -73227371 + MIR SINE MIR 51 262 0 371 328 54 30 chr9 44635710 44636006 -73226621 - L2 LINE L2 -1 3271 2969 2406 177 105 7 chr9 44636205 44640447 -73222180 - SATR1 Satellite Satellite 0 4658 1 247 229 11 56 chr9 44640585 44640764 -73221863 + (TAA)n Simple_repeat Simple_repeat 1 171 0 1807 205 115 65 chr9 44640862 44642084 -73220543 + SATR1 Satellite Satellite 1 1283 -8 2291 182 96 22 chr9 44642121 44644815 -73217812 - SATR1 Satellite Satellite -2 2894 1 413 228 6 31 chr9 44644816 44644978 -73217649 + (TAA)n Simple_repeat Simple_repeat 3 160 0 204 221 11 63 chr9 44645012 44645202 -73217425 + (TAA)n Simple_repeat Simple_repeat 1 180 0 1894 207 124 63 chr9 44645228 44646366 -73216261 + SATR1 Satellite Satellite 1 1208 -87 274 258 22 47 chr9 44646914 44647195 -73215432 + SATR1 Satellite Satellite 1 274 -135 3837 128 5 13 chr9 44647291 44647893 -73214734 - HERVE LTR ERV1 -3967 3846 3250 1450 231 92 66 chr9 44648627 44649296 -73213331 + SATR1 Satellite Satellite 1 651 -1676 3096 210 19 80 chr9 44649296 44650328 -73212299 - LTR5 LTR ERVK 0 969 1 1450 231 92 66 chr9 44650328 44650853 -73211774 + SATR1 Satellite Satellite 651 2285 -42 289 164 0 33 chr9 44650889 44650950 -73211677 - LTR5 LTR ERVK -910 59 1 821 236 68 39 chr9 44650950 44651316 -73211311 + SATR1 Satellite Satellite 1 376 -131 1976 127 30 3 chr9 44651442 44651742 -73210885 - AluSc SINE Alu -1 308 1 1451 265 9 58 chr9 44651743 44652192 -73210435 - L1MEc LINE L1 -5932 464 38 691 226 8 73 chr9 44652193 44652427 -73210200 + MER20B DNA MER1_type 563 781 -2 629 205 16 0 chr9 44652439 44652561 -73210066 + MER94 DNA DNA 1 124 -10 952 243 5 0 chr9 44653038 44653252 -73209375 - MIR SINE MIR 0 262 48 347 302 78 53 chr9 44653572 44653969 -73208658 - L2 LINE L2 -841 2473 2067 1860 190 79 41 chr9 44654107 44654550 -73208077 - MLT1C LTR MaLR 0 467 8 1034 161 16 115 chr9 44655884 44655965 -73206662 + MER20 DNA MER1_type 1 88 -131 1665 137 7 4 chr9 44655965 44656235 -73206392 - L1MB3 LINE L1 -7 6176 5906 1034 161 16 115 chr9 44656235 44656396 -73206231 + MER20 DNA MER1_type 88 219 0 559 253 47 25 chr9 44656433 44656740 -73205887 - MLT1I LTR MaLR -1 408 61 183 42 0 0 chr9 44656859 44656883 -73205744 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1761 149 4 11 chr9 44656906 44657175 -73205452 - AluJb SINE Alu -45 267 1 300 266 80 43 chr9 44657601 44657789 -73204838 + MER117 DNA MER1_type 2 196 -1 677 102 0 2 chr9 44657980 44658239 -73204388 + AluSx SINE Alu 1 308 0 428 271 8 0 chr9 44658245 44658363 -73204264 - L2 LINE L2 -15 3298 3180 1020 248 121 22 chr9 44658620 44658983 -73203644 + L2 LINE L2 2910 3308 -5 1434 131 68 0 chr9 44659451 44659672 -73202955 + AluJb SINE Alu 67 302 -10 240 282 0 14 chr9 44659675 44659746 -73202881 - MIR3 SINE MIR -27 181 112 296 261 134 15 chr9 44660433 44660567 -73202060 + MIR SINE MIR 110 259 -3 1805 149 23 32 chr9 44661515 44661823 -73200804 - AluJb SINE Alu -7 305 1 1463 160 4 8 chr9 44662441 44662678 -73199949 + MER65A LTR ERV1 41 276 -169 890 141 55 12 chr9 44662778 44662941 -73199686 + MER65A LTR ERV1 276 445 0 828 233 22 0 chr9 44663101 44663281 -73199346 + MER5A DNA MER1_type 5 188 -1 279 0 0 0 chr9 44663345 44663376 -73199251 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1167 152 62 43 chr9 44663409 44663620 -73199007 - AluJb SINE Alu -97 215 1 631 225 7 7 chr9 44663638 44663780 -73198847 + MER5B DNA MER1_type 37 178 0 513 207 173 0 chr9 44663794 44663944 -73198683 - MER5A DNA MER1_type -6 183 8 614 217 49 5 chr9 44664221 44664405 -73198222 - MER113 DNA MER1_type? -329 192 1 21 0 0 0 chr9 44664810 44664831 -73197796 + AT_rich Low_complexity Low_complexity 1 21 0 279 268 57 39 chr9 44665260 44665406 -73197221 + MIR3 SINE MIR 58 207 -1 2184 111 0 0 chr9 44665825 44666113 -73196514 - AluSx SINE Alu -24 288 1 21 36 0 0 chr9 44667241 44667269 -73195358 + AT_rich Low_complexity Low_complexity 1 28 0 4712 169 54 48 chr9 44668875 44668959 -73193668 - L1 LINE L1 -1828 4318 4236 1134 129 5 58 chr9 44668959 44669183 -73193444 - L1PA16 LINE L1 0 6166 5955 4712 169 54 48 chr9 44669183 44670124 -73192503 - L1 LINE L1 -1910 4236 3287 390 285 23 31 chr9 44670851 44670946 -73191681 + MIR SINE MIR 53 148 -114 2113 148 54 11 chr9 44670946 44671297 -73191330 + MER47A DNA MER2_type 1 366 0 390 285 23 31 chr9 44671297 44671331 -73191296 + MIR SINE MIR 148 181 -81 431 304 8 0 chr9 44671859 44671984 -73190643 + MER94 DNA DNA 3 128 -6 288 232 105 32 chr9 44672292 44672387 -73190240 - LTR67 LTR ERVL 0 557 456 2572 188 93 0 chr9 44672815 44673330 -73189297 - MER99 DNA DNA 0 828 266 503 250 18 0 chr9 44673667 44673779 -73188848 - MER99 DNA DNA -714 114 1 821 126 0 30 chr9 44675205 44675340 -73187287 + FLAM_C SINE Alu 1 131 -2 224 275 0 0 chr9 44675572 44675652 -73186975 + (TAA)n Simple_repeat Simple_repeat 3 82 0 675 279 21 0 chr9 44675659 44675849 -73186778 - MIR SINE MIR -10 252 59 333 239 0 0 chr9 44676413 44676484 -73186143 + MIR SINE MIR 80 150 -112 347 183 12 0 chr9 44676487 44676569 -73186058 + (TA)n Simple_repeat Simple_repeat 1 83 0 563 138 145 14 chr9 44676839 44676977 -73185650 + MER103 DNA DNA 3 158 -8 396 125 0 0 chr9 44677428 44677484 -73185143 + Alu SINE Alu 238 293 -7 340 256 74 8 chr9 44677477 44677598 -73185029 + MER103 DNA DNA 38 166 0 * 447 163 163 8 chr9 44677997 44678120 -73184507 - MIR SINE MIR -3 259 118 1495 145 99 0 chr9 44678906 44679148 -73183479 + AluJb SINE Alu 1 266 -46 1717 129 14 14 chr9 44679246 44679541 -73183086 - L1MA7 LINE L1 -8 6283 5989 213 39 0 0 chr9 44680432 44680458 -73182169 + (A)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr9 44680592 44680617 -73182010 + (CA)n Simple_repeat Simple_repeat 1 25 0 468 0 0 0 chr9 44681970 44682022 -73180605 + (CA)n Simple_repeat Simple_repeat 2 53 0 1446 204 40 23 chr9 44683886 44684190 -73178437 - AluJb SINE Alu -3 309 1 69 59 0 0 chr9 44684341 44684459 -73178168 + AT_rich Low_complexity Low_complexity 1 118 0 25 0 0 0 chr9 44684627 44684652 -73177975 + AT_rich Low_complexity Low_complexity 1 25 0 1612 159 12 8 chr9 44685013 44685265 -73177362 - AluJo SINE Alu -19 293 41 284 219 81 16 chr9 44685409 44685532 -73177095 - L1MC5 LINE L1 -498 7463 7333 1866 192 3 3 chr9 44685533 44685892 -73176735 - MLT1A1 LTR MaLR -6 359 1 229 264 42 0 chr9 44685892 44685964 -73176663 - L1MC5 LINE L1 -630 7331 7257 * 460 266 48 31 chr9 44685962 44686398 -73176229 - L1MC4 LINE L1 -646 7396 6960 2305 115 0 3 chr9 44686944 44687257 -73175370 - AluSx SINE Alu 0 312 1 1093 147 34 34 chr9 44687308 44687512 -73175115 + MER3 DNA MER1_type 2 205 -4 280 167 0 61 chr9 44687775 44687841 -73174786 - MER4D LTR ERV1 -810 62 1 23 0 0 0 chr9 44689775 44689798 -73172829 + AT_rich Low_complexity Low_complexity 1 23 0 506 267 158 38 chr9 44690051 44690628 -73171999 + L1ME4a LINE L1 5379 6024 -97 492 256 13 58 chr9 44690753 44690909 -73171718 + MIR SINE MIR 49 197 -65 217 291 0 0 chr9 44691161 44691216 -73171411 + (CA)n Simple_repeat Simple_repeat 1 55 0 1783 176 7 7 chr9 44692726 44693032 -73169595 - AluJo SINE Alu -6 306 1 310 188 38 0 chr9 44693133 44693213 -73169414 + L1ME4a LINE L1 5774 5856 -265 292 316 0 0 chr9 44693312 44693391 -73169236 - MIR SINE MIR -121 141 63 193 315 0 0 chr9 44695692 44695746 -73166881 - MIR SINE MIR -68 140 87 808 255 80 11 chr9 44695925 44696188 -73166439 + MLT1C LTR MaLR 187 467 0 878 224 46 12 chr9 44696212 44696471 -73166156 - MLT1C LTR MaLR 0 467 200 1412 156 8 0 chr9 44696471 44696708 -73165919 - ERVL LTR ERVL -1363 4401 4163 2503 156 15 0 chr9 44696719 44697129 -73165498 - MSTB LTR MaLR -10 416 1 777 163 56 12 chr9 44697129 44697289 -73165338 - ERVL LTR ERVL -1598 4166 4000 502 251 73 73 chr9 44697802 44698172 -73164455 - MLT1J2 LTR MaLR -43 407 59 217 316 53 0 chr9 44698336 44698431 -73164196 + L2 LINE L2 3208 3307 -6 254 313 48 0 chr9 44698513 44698596 -73164031 + L2 LINE L2 2395 2481 -833 305 135 0 0 chr9 44698605 44698657 -73163970 - MLT1F LTR MaLR -1 541 490 427 107 13 0 chr9 44698662 44698737 -73163890 - MLT1F LTR MaLR -185 357 282 456 232 187 0 chr9 44698825 44698980 -73163647 - L2 LINE L2 0 3313 3130 1571 234 60 1 chr9 44698985 44699434 -73163193 - MLT1F LTR MaLR -58 509 1 387 324 51 17 chr9 44699451 44699627 -73163000 + L2 LINE L2 2494 2675 -639 1086 264 90 38 chr9 44699663 44700259 -73162368 - L2 LINE L2 0 3313 2681 275 292 0 14 chr9 44700283 44700355 -73162272 + L2 LINE L2 2716 2786 -528 27 0 0 0 chr9 44700359 44700386 -73162241 + AT_rich Low_complexity Low_complexity 1 27 0 441 0 0 0 chr9 44700563 44700612 -73162015 + (TG)n Simple_repeat Simple_repeat 2 50 0 588 14 0 0 chr9 44700853 44700922 -73161705 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 186 250 60 90 chr9 44701736 44701836 -73160791 - MIR SINE MIR -89 119 23 266 313 12 0 chr9 44701937 44702017 -73160610 - MIR SINE MIR -61 147 67 389 272 74 36 chr9 44702235 44702544 -73160083 - L1MC5 LINE L1 -140 7821 7501 8814 244 50 9 chr9 44702728 44704901 -73157726 + L1PBa LINE L1 2719 5054 -1808 276 77 0 0 chr9 44704901 44704940 -73157687 + (CA)n Simple_repeat Simple_repeat 2 40 0 8814 244 50 9 chr9 44704940 44705813 -73156814 + L1PBa LINE L1 5054 5890 -972 28 29 0 0 chr9 44705916 44705951 -73156676 + AT_rich Low_complexity Low_complexity 1 35 0 1330 168 69 0 chr9 44706495 44706798 -73155829 - MER33 DNA MER1_type 0 324 1 189 0 0 0 chr9 44707008 44707029 -73155598 + (A)n Simple_repeat Simple_repeat 1 21 0 305 269 25 67 chr9 44707141 44707260 -73155367 - MIR SINE MIR -62 146 33 407 75 30 0 chr9 44709503 44709570 -73153057 - L1MB4 LINE L1 0 6180 6112 6995 177 48 64 chr9 44711269 44712966 -73149661 + MER52A LTR ERV1 1 1755 0 35 24 0 0 chr9 44715096 44715138 -73147489 + AT_rich Low_complexity Low_complexity 1 42 0 2148 131 0 3 chr9 44715518 44715823 -73146804 + AluSx SINE Alu 1 304 -8 505 304 59 26 chr9 44716526 44716796 -73145831 + L1MC/D LINE L1 5545 5823 -1985 587 212 9 0 chr9 44716872 44716985 -73145642 - FRAM SINE Alu -22 154 41 5581 156 12 11 chr9 44717090 44718849 -73143778 + L1PB1 LINE L1 4396 6151 0 17159 97 4 210 chr9 44720156 44722282 -73140345 + L1P LINE L1 1189 3751 -2395 389 197 0 0 chr9 44722282 44722353 -73140274 + MER21B LTR ERV1 15 85 -778 17159 97 4 210 chr9 44722353 44722382 -73140245 + L1P LINE L1 3751 3784 -2362 295 227 45 0 chr9 44722382 44722448 -73140179 + MER21B LTR ERV1 21 89 -774 17159 97 4 210 chr9 44722448 44722726 -73139901 + L1P LINE L1 3784 4117 -2029 2127 133 3 0 chr9 44722726 44723034 -73139593 + AluSp SINE Alu 1 309 -4 17159 97 4 210 chr9 44723034 44723288 -73139339 + L1P LINE L1 4117 4422 -1724 2379 73 3 3 chr9 44723288 44723591 -73139036 + AluY SINE Alu 1 303 -8 17159 97 4 210 chr9 44723591 44725898 -73136729 + L1P LINE L1 4422 5265 -881 771 243 60 11 chr9 44726051 44726421 -73136206 + L1M4 LINE L1 3025 3412 -2734 295 340 34 25 chr9 44726907 44727043 -73135584 - MER5A DNA MER1_type -3 175 44 227 219 68 137 chr9 44726927 44727073 -73135554 + MER5A DNA MER1_type 42 177 -12 * 2085 204 12 66 chr9 44727278 44727857 -73134770 + LTR55 LTR ERV 1 548 0 1602 174 42 55 chr9 44728775 44729154 -73133473 + MLT1A2 LTR MaLR 1 374 0 394 286 105 26 chr9 44729236 44729446 -73133181 - MIR SINE MIR -36 226 4 22 0 0 0 chr9 44730268 44730290 -73132337 + AT_rich Low_complexity Low_complexity 1 22 0 743 126 24 8 chr9 44731267 44731394 -73131233 + L1MA5A LINE L1 5905 6033 -264 379 267 147 17 chr9 44731528 44731760 -73130867 + L2 LINE L2 1556 1817 -1497 461 337 45 16 chr9 44731932 44732175 -73130452 + L2 LINE L2 2219 2468 -846 199 349 93 0 chr9 44732231 44732317 -73130310 + L2 LINE L2 3118 3211 -61 245 29 29 0 chr9 44732628 44732662 -73129965 + (CA)n Simple_repeat Simple_repeat 2 36 0 229 227 261 0 chr9 44733024 44733112 -73129515 + MIR SINE MIR 82 192 -70 2129 108 11 0 chr9 44733176 44733453 -73129174 + AluSx SINE Alu 6 285 -27 648 70 0 0 chr9 44733459 44733545 -73129082 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 1113 216 97 128 chr9 44733722 44733964 -73128663 - L1MC5 LINE L1 -55 7906 7658 2103 118 3 0 chr9 44733964 44734251 -73128376 + AluSx SINE Alu 4 291 -21 1113 216 97 128 chr9 44734251 44734936 -73127691 - L1MC5 LINE L1 -303 7658 7008 614 193 67 0 chr9 44735056 44735175 -73127452 + MER20 DNA MER1_type 93 219 0 24 32 0 0 chr9 44736217 44736248 -73126379 + AT_rich Low_complexity Low_complexity 1 31 0 788 272 46 17 chr9 44736289 44736528 -73126099 + L2 LINE L2 2147 2392 -922 1798 156 125 3 chr9 44736835 44737156 -73125471 + MLT1A1 LTR MaLR 5 364 -1 280 235 12 25 chr9 44737790 44737871 -73124756 + MIR SINE MIR 156 235 -27 1109 164 9 73 chr9 44739816 44740048 -73122579 - MER20 DNA MER1_type -2 217 1 873 108 78 0 chr9 44740252 44740381 -73122246 + MER85 DNA T2_type 1 139 0 523 128 239 0 chr9 44741677 44741794 -73120833 + MLT1E3 LTR MaLR 474 618 -6 271 284 35 52 chr9 44741939 44742055 -73120572 + MIR SINE MIR 31 144 -118 319 382 7 7 chr9 44742539 44742691 -73119936 - L2 LINE L2 -527 2787 2636 2308 120 0 0 chr9 44745897 44746327 -73116300 + AluSx SINE Alu 1 430 0 743 308 52 4 chr9 44746414 44746664 -73115963 - MIR SINE MIR 0 262 1 228 284 123 0 chr9 44746752 44746833 -73115794 + L1MEd LINE L1 270 360 -5759 249 261 0 15 chr9 44747408 44747473 -73115154 - L1 LINE L1 -1222 4924 4861 217 325 75 42 chr9 44747658 44747778 -73114849 - MIR SINE MIR -133 129 6 186 43 0 0 chr9 44748107 44748130 -73114497 + (CA)n Simple_repeat Simple_repeat 2 24 0 403 345 0 9 chr9 44749595 44749708 -73112919 - L2 LINE L2 -1 3271 3160 657 179 34 8 chr9 44751070 44751187 -73111440 - MLT1A1 LTR MaLR 0 365 246 316 284 101 0 chr9 44751833 44751964 -73110663 + MIR SINE MIR 57 200 -62 1753 183 35 6 chr9 44751985 44752313 -73110314 - MLT1A1 LTR MaLR 0 365 10 1655 206 19 25 chr9 44752313 44752677 -73109950 + L1PA12 LINE L1 13 374 -7207 1087 264 42 72 chr9 44754560 44755112 -73107515 - MLT1K LTR MaLR 0 588 54 836 177 81 27 chr9 44755368 44755554 -73107073 + MLT1D LTR MaLR 1 196 -309 5234 168 16 4 chr9 44755673 44757241 -73105386 - L1PB1 LINE L1 -124 6027 4446 454 173 154 25 chr9 44757751 44757913 -73104714 + MER113 DNA MER1_type? 7 189 -332 2566 52 0 3 chr9 44757956 44758264 -73104363 + AluY SINE Alu 1 307 -4 352 275 89 51 chr9 44758794 44758821 -73103806 - MIR SINE MIR -3 259 234 2296 95 0 13 chr9 44758821 44759126 -73103501 + AluSg SINE Alu 1 301 -9 352 275 89 51 chr9 44759126 44759334 -73103293 - MIR SINE MIR -28 234 15 685 244 115 19 chr9 44759863 44760072 -73102555 - Charlie8 DNA MER1_type -2142 275 47 393 188 0 0 chr9 44760072 44760152 -73102475 + (CA)n Simple_repeat Simple_repeat 1 80 0 223 182 0 0 chr9 44760203 44760247 -73102380 - MIR3 SINE MIR -1 207 164 305 271 52 10 chr9 44761990 44762086 -73100541 - L2 LINE L2 -5 3267 3168 2858 162 34 19 chr9 44762744 44763270 -73099357 + L1MA9 LINE L1 5316 5849 -463 1970 185 35 37 chr9 44763272 44763815 -73098812 - MLT2A2 LTR ERVL -8 546 2 2770 147 24 11 chr9 44763817 44764274 -73098353 + L1MA9 LINE L1 5848 6310 -2 266 360 77 24 chr9 44766148 44766317 -73096310 + MIR3 SINE MIR 15 190 -66 211 304 130 22 chr9 44766689 44766781 -73095846 + L2 LINE L2 3170 3271 -1 1443 219 78 3 chr9 44767100 44767470 -73095157 - L1MB7 LINE L1 -23 6161 5764 217 348 214 0 chr9 44767678 44767767 -73094860 - L2 LINE L2 -16 3256 3149 715 201 55 0 chr9 44767767 44767931 -73094696 - MIR SINE MIR 0 262 90 393 337 100 40 chr9 44767967 44768466 -73094161 - L2 LINE L2 -888 2426 1898 3756 147 2 0 chr9 44768568 44769153 -73093474 + L1PA11 LINE L1 3972 4557 -1589 4859 107 32 27 chr9 44770433 44771724 -73090903 + L1PA11 LINE L1 4548 5843 -331 332 306 111 37 chr9 44772061 44772332 -73090295 + L2 LINE L2 3023 3313 0 1520 62 0 0 chr9 44772773 44772951 -73089676 - L1PA7 LINE L1 -6 6148 5971 181 333 70 26 chr9 44773160 44773316 -73089311 + L2 LINE L2 2740 2902 -412 1382 144 11 49 chr9 44773498 44773761 -73088866 - AluJo SINE Alu -19 293 41 191 174 14 116 chr9 44773761 44773830 -73088797 + L2 LINE L2 3159 3220 -93 3805 187 34 14 chr9 44774154 44774998 -73087629 + L1MB1 LINE L1 5297 6168 0 17681 43 3 0 chr9 44775791 44778048 -73084579 + L1P1 LINE L1 3237 5500 -655 1615 134 4 4 chr9 44778156 44778395 -73084232 + AluSg/x SINE Alu 70 308 -4 182 36 0 36 chr9 44778395 44778423 -73084204 + (GGA)n Simple_repeat Simple_repeat 2 28 0 1950 146 3 0 chr9 44778429 44778716 -73083911 - AluSx SINE Alu -24 288 1 2084 114 27 129 chr9 44778884 44779287 -73083340 - THE1B LTR MaLR -2 362 1 1688 150 68 37 chr9 44779838 44780218 -73082409 + L1MB3 LINE L1 5572 5963 -220 471 325 188 6 chr9 44780595 44780915 -73081712 + L1MC4a LINE L1 5531 5908 -1900 420 97 0 0 chr9 44782270 44782332 -73080295 + (CA)n Simple_repeat Simple_repeat 1 62 0 478 258 201 13 chr9 44783304 44783463 -73079164 + MIR SINE MIR 8 196 -66 411 246 138 66 chr9 44783993 44784413 -73078214 - L1PA8A LINE L1 -688 5443 4996 1040 225 122 39 chr9 44784581 44784967 -73077660 - MLT1J2 LTR MaLR -31 419 2 616 274 13 51 chr9 44784967 44785201 -73077426 - L1M4 LINE L1 -1307 4839 4615 305 158 18 35 chr9 44785472 44785529 -73077098 - LTR40a LTR ERVL -450 69 14 2127 106 0 7 chr9 44785625 44785959 -73076668 - AluSx SINE Alu 0 312 1 435 157 0 116 chr9 44786473 44786594 -73076033 + L1M4 LINE L1 4948 5054 -1092 6130 134 56 6 chr9 44786954 44788774 -73073853 + L1PBa LINE L1 6 2060 -4803 232 338 0 0 chr9 44789904 44789972 -73072655 + L2 LINE L2 3203 3270 -2 690 206 0 14 chr9 44790886 44791027 -73071600 - MLT1A1 LTR MaLR 0 365 227 9512 30 0 1 chr9 44791178 44793011 -73069616 + L1PA3 LINE L1 4321 6152 -3 3751 132 9 9 chr9 44793039 44793608 -73069019 + Tigger1 DNA MER2_type 1100 1668 -750 246 285 101 39 chr9 44844091 44844298 -73018329 + MLT1K LTR MaLR 367 586 -2 2189 115 3 7 chr9 44844677 44844981 -73017646 + AluSx SINE Alu 1 303 -9 584 230 59 87 chr9 44845459 44845871 -73016756 - MLT1L LTR MaLR -33 565 111 2137 136 3 0 chr9 44846069 44846476 -73016151 - AluSx SINE Alu 0 408 1 239 235 0 0 chr9 44846476 44846527 -73016100 - MER5A DNA MER1_type -113 76 26 739 261 12 0 chr9 44846557 44846718 -73015909 - MER5B DNA MER1_type -14 164 2 186 250 60 90 chr9 44847722 44847822 -73014805 - MIR SINE MIR -89 119 23 240 325 12 0 chr9 44847923 44848003 -73014624 - MIR SINE MIR -61 147 67 389 272 74 36 chr9 44848221 44848530 -73014097 - L1MC5 LINE L1 -140 7821 7501 826 212 24 28 chr9 44848714 44848999 -73013628 + L1PBa LINE L1 2719 2994 -3868 420 299 58 75 chr9 44849106 44849260 -73013367 - L1MC4 LINE L1 -188 7854 7706 1612 159 12 8 chr9 44849260 44849512 -73013115 - AluJo SINE Alu -19 293 41 420 299 58 75 chr9 44849512 44849635 -73012992 - L1MC4 LINE L1 -336 7706 7582 284 219 81 16 chr9 44849656 44849779 -73012848 - L1MC5 LINE L1 -498 7463 7333 1843 195 3 3 chr9 44849780 44850139 -73012488 - MLT1A1 LTR MaLR -6 359 1 229 264 42 0 chr9 44850139 44850211 -73012416 - L1MC5 LINE L1 -630 7331 7257 * 460 266 48 31 chr9 44850209 44850645 -73011982 - L1MC4 LINE L1 -646 7396 6960 2305 115 0 3 chr9 44851189 44851502 -73011125 - AluSx SINE Alu 0 312 1 1093 147 34 34 chr9 44851553 44851757 -73010870 + MER3 DNA MER1_type 2 205 -4 280 167 0 61 chr9 44852020 44852086 -73010541 - MER4D LTR ERV1 -810 62 1 23 0 0 0 chr9 44854020 44854043 -73008584 + AT_rich Low_complexity Low_complexity 1 23 0 506 267 158 38 chr9 44854296 44854873 -73007754 + L1ME4a LINE L1 5379 6024 -97 502 250 13 58 chr9 44854998 44855154 -73007473 + MIR SINE MIR 49 197 -65 1783 176 7 7 chr9 44856522 44856828 -73005799 - AluJo SINE Alu -6 306 1 310 188 38 0 chr9 44856929 44857009 -73005618 + L1ME4a LINE L1 5774 5856 -265 294 316 0 0 chr9 44857108 44857187 -73005440 - MIR SINE MIR -121 141 63 193 315 0 0 chr9 44859486 44859540 -73003087 - MIR SINE MIR -68 140 87 796 259 80 11 chr9 44859721 44859984 -73002643 + MLT1C LTR MaLR 187 467 0 909 223 42 11 chr9 44860008 44860268 -73002359 - MLT1C LTR MaLR 0 467 200 1426 156 8 0 chr9 44860268 44860505 -73002122 - ERVL LTR ERVL -1363 4401 4163 2486 158 15 0 chr9 44860516 44860926 -73001701 - MSTB LTR MaLR -10 416 1 836 144 56 12 chr9 44860926 44861086 -73001541 - ERVL LTR ERVL -1598 4166 4000 502 251 73 73 chr9 44861599 44861969 -73000658 - MLT1J2 LTR MaLR -43 407 59 220 316 53 0 chr9 44862133 44862228 -73000399 + L2 LINE L2 3208 3307 -6 254 313 48 0 chr9 44862310 44862393 -73000234 + L2 LINE L2 2395 2481 -833 305 135 0 0 chr9 44862402 44862454 -73000173 - MLT1F LTR MaLR -1 541 490 427 107 13 0 chr9 44862459 44862534 -73000093 - MLT1F LTR MaLR -185 357 282 456 232 187 0 chr9 44862622 44862777 -72999850 - L2 LINE L2 0 3313 3130 363 254 31 0 chr9 44862821 44862951 -72999676 - MLT1K LTR MaLR -111 431 298 957 202 59 4 chr9 44863053 44863291 -72999336 + L1 LINE L1 4917 5167 -979 28 29 0 0 chr9 44863403 44863438 -72999189 + AT_rich Low_complexity Low_complexity 1 35 0 1330 168 69 0 chr9 44863983 44864286 -72998341 - MER33 DNA MER1_type 0 324 1 189 0 0 0 chr9 44864495 44864516 -72998111 + (A)n Simple_repeat Simple_repeat 1 21 0 305 269 25 67 chr9 44864628 44864747 -72997880 - MIR SINE MIR -62 146 33 407 75 30 0 chr9 44866993 44867060 -72995567 - L1MB4 LINE L1 0 6180 6112 3059 238 124 41 chr9 44868608 44869989 -72992638 - HAL1 LINE L1 -19 2488 993 3281 186 30 14 chr9 44869999 44870693 -72991934 - L1ME1 LINE L1 -5 6161 5457 788 247 57 4 chr9 44870696 44870959 -72991668 - HAL1 LINE L1 -1507 1000 724 676 339 25 7 chr9 44871049 44871329 -72991298 - MLT1K LTR MaLR -302 286 2 289 319 57 93 chr9 44871409 44871795 -72990832 + L2 LINE L2 2892 3263 -9 279 180 0 0 chr9 44872089 44872139 -72990488 + L2 LINE L2 3255 3304 -9 23 0 0 0 chr9 44872700 44872723 -72989904 + AT_rich Low_complexity Low_complexity 1 23 0 982 260 45 4 chr9 44873353 44873595 -72989032 + MIR SINE MIR 1 252 -10 188 268 113 14 chr9 44873709 44873780 -72988847 + MIR SINE MIR 133 210 -52 259 145 72 0 chr9 44874049 44874118 -72988509 + (TA)n Simple_repeat Simple_repeat 1 74 0 948 200 0 12 chr9 44874221 44874391 -72988236 + AluJo SINE Alu 1 168 -144 2242 228 74 3 chr9 44874392 44875011 -72987616 + L1ME2 LINE L1 5491 6153 -11 1130 139 0 44 chr9 44875072 44875252 -72987375 + AluSp SINE Alu 131 302 -11 1797 183 7 10 chr9 44875379 44875679 -72986948 - AluJo SINE Alu -13 299 1 2316 206 103 39 chr9 44875680 44876531 -72986096 - L1ME1 LINE L1 -945 5201 4296 535 267 6 42 chr9 44876899 44877064 -72985563 - MIR SINE MIR -64 198 40 254 352 95 57 chr9 44878326 44878641 -72983986 - L2 LINE L2 0 3272 2946 538 253 49 48 chr9 44879057 44879468 -72983159 - LTR33 LTR ERVL -4 517 38 431 290 26 61 chr9 44880069 44880472 -72982155 - L1MC/D LINE L1 -843 5516 5254 260 399 110 22 chr9 44880568 44880969 -72981658 + L2 LINE L2 2315 2750 -564 184 307 104 50 chr9 44881061 44881263 -72981364 + L2 LINE L2 2835 3047 -225 605 188 6 111 chr9 44882553 44882643 -72979984 + L1ME1 LINE L1 6000 6098 -68 315 0 0 0 chr9 44882643 44882678 -72979949 + (TG)n Simple_repeat Simple_repeat 2 36 0 605 188 6 111 chr9 44882678 44882728 -72979899 + L1ME1 LINE L1 6098 6120 -46 2310 96 0 3 chr9 44882728 44883029 -72979598 + AluSx SINE Alu 1 300 -12 605 188 6 111 chr9 44883029 44883068 -72979559 + L1ME1 LINE L1 6120 6161 -5 2932 107 5 2 chr9 44883870 44884263 -72978364 + MER1A DNA MER1_type 135 528 -1 339 254 107 8 chr9 44884312 44884434 -72978193 - MIR SINE MIR -96 166 33 183 139 0 0 chr9 44884509 44884545 -72978082 + (TGGGGG)n Simple_repeat Simple_repeat 6 41 0 1968 137 0 7 chr9 44884869 44885176 -72977451 - AluSx SINE Alu 0 305 1 314 291 91 91 chr9 44885555 44886049 -72976578 - MLT1K LTR MaLR -2 586 93 297 191 38 30 chr9 44886339 44886470 -72976157 + CT-rich Low_complexity Low_complexity 1 132 0 324 302 0 0 chr9 44886890 44886976 -72975651 + MIR SINE MIR 28 113 -149 3008 108 47 0 chr9 44886980 44887389 -72975238 - MSTC LTR MaLR 0 428 1 205 217 181 36 chr9 44887390 44887418 -72975209 + MIR SINE MIR 168 191 -71 606 28 0 0 chr9 44887418 44887490 -72975137 + (TA)n Simple_repeat Simple_repeat 1 72 0 205 217 181 36 chr9 44887490 44887544 -72975083 + MIR SINE MIR 191 262 0 1687 159 18 18 chr9 44887914 44888190 -72974437 - AluJo SINE Alu -36 276 1 6192 30 0 1 chr9 44889116 44889850 -72972777 - L1PA3 LINE L1 -777 5369 4637 7419 16 1 0 chr9 44889850 44890644 -72971983 + L1PA3 LINE L1 5353 6154 -1 1073 264 22 47 chr9 44890742 44891144 -72971483 - MLT1J LTR MaLR -115 396 5 248 70 23 0 chr9 44891302 44891345 -72971282 + (GGA)n Simple_repeat Simple_repeat 2 45 0 239 226 97 0 chr9 44891390 44891452 -72971175 - MIR SINE MIR -87 175 108 591 262 153 35 chr9 44891540 44891853 -72970774 - MLT1L LTR MaLR -15 600 251 268 227 15 15 chr9 44891902 44891968 -72970659 - MLT1L LTR MaLR -532 83 18 692 112 0 86 chr9 44892014 44892130 -72970497 + FLAM_A SINE Alu 16 121 -21 237 258 11 11 chr9 44892134 44892223 -72970404 - L1MC4 LINE L1 -1339 6703 6615 225 0 0 0 chr9 44892242 44892267 -72970360 + (TA)n Simple_repeat Simple_repeat 1 25 0 247 343 128 64 chr9 44892378 44892582 -72970045 - L2 LINE L2 -10 3262 3046 184 351 85 0 chr9 44892638 44892732 -72969895 + L2 LINE L2 3189 3290 -23 2882 118 42 24 chr9 44894652 44895076 -72967551 + MSTB1 LTR MaLR 1 432 0 204 347 49 91 chr9 44895325 44895590 -72967037 - L2 LINE L2 -25 3247 2994 541 0 14 14 chr9 44896543 44896613 -72966014 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 1012 224 39 60 chr9 44897080 44897361 -72965266 + LTR16C LTR ERVL 216 490 -1 630 219 48 80 chr9 44902074 44902215 -72960412 + LTR33A LTR ERVL 340 476 -47 2159 106 3 0 chr9 44902215 44902526 -72960101 + AluSx SINE Alu 1 312 0 630 219 48 80 chr9 44902526 44902570 -72960057 + LTR33A LTR ERVL 476 520 -3 22 56 0 0 chr9 44902792 44902828 -72959799 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr9 44902848 44902891 -72959736 + AT_rich Low_complexity Low_complexity 1 43 0 254 0 83 0 chr9 44903210 44903246 -72959381 + T-rich Low_complexity Low_complexity 2 40 0 829 112 40 0 chr9 44903246 44903371 -72959256 - AluJb SINE Alu -182 130 1 5417 86 1 3 chr9 44903510 44904207 -72958420 - L1PB1 LINE L1 -3 6148 5453 525 80 0 0 chr9 44904409 44904484 -72958143 + (TC)n Simple_repeat Simple_repeat 2 76 0 244 306 35 0 chr9 44904882 44904967 -72957660 + L3 LINE CR1 1143 1230 -347 2007 189 2 4 chr9 44905006 44905361 -72957266 - MLT1A1 LTR MaLR 0 365 15 475 214 84 13 chr9 44905410 44905564 -72957063 + MER103 DNA DNA 2 166 0 281 259 14 116 chr9 44906989 44907136 -72955491 + MIR SINE MIR 86 217 -45 419 226 19 118 chr9 44907260 44907472 -72955155 - L1ME LINE L1 -330 5791 5601 190 330 147 9 chr9 44907650 44907759 -72954868 + L2 LINE L2 3144 3267 -5 212 250 118 13 chr9 44907820 44907896 -72954731 - L2 LINE L2 -3 3269 3186 425 300 0 0 chr9 44909709 44909809 -72952818 + MIR SINE MIR 48 147 -115 261 264 35 11 chr9 44909914 44910001 -72952626 + MIR SINE MIR 172 260 -2 294 327 74 12 chr9 44910464 44910626 -72952001 - L3b LINE CR1 -90 1493 1322 516 256 37 100 chr9 44912863 44912967 -72949660 - L1ME4a LINE L1 -94 6027 5918 1948 150 3 13 chr9 44912967 44913280 -72949347 - AluSx SINE Alu -2 310 1 516 256 37 100 chr9 44913280 44913393 -72949234 - L1ME4a LINE L1 -203 5918 5799 2187 109 0 3 chr9 44913393 44913686 -72948941 - AluSx SINE Alu -20 292 1 516 256 37 100 chr9 44913686 44913925 -72948702 - L1ME4a LINE L1 -322 5799 5599 185 296 217 26 chr9 44913980 44914095 -72948532 + MIR3 SINE MIR 38 174 -34 2370 109 0 0 chr9 44914814 44915125 -72947502 + AluSx SINE Alu 1 311 -1 1767 134 69 0 chr9 44915304 44915580 -72947047 + AluSx SINE Alu 1 295 -17 21 71 0 0 chr9 44915677 44915719 -72946908 + AT_rich Low_complexity Low_complexity 1 42 0 565 276 92 81 chr9 44915791 44916027 -72946600 + L2 LINE L2 2922 3165 -148 2758 198 13 13 chr9 44916027 44916583 -72946044 - L1MB8 LINE L1 -2 6176 5621 565 276 92 81 chr9 44916583 44916705 -72945922 + L2 LINE L2 3165 3284 -29 227 277 196 31 chr9 44917540 44917672 -72944955 - MIR SINE MIR -65 143 1 288 70 0 0 chr9 44918346 44918389 -72944238 + (CA)n Simple_repeat Simple_repeat 2 44 0 728 257 32 23 chr9 44918494 44918712 -72943915 + Charlie8 DNA MER1_type 70 289 -2128 2267 101 7 3 chr9 44918785 44919093 -72943534 + AluSx SINE Alu 1 309 -3 295 340 0 42 chr9 44919149 44919293 -72943334 - MER5A DNA MER1_type -3 186 49 303 369 37 37 chr9 44919298 44919566 -72943061 + L1ME1 LINE L1 21 288 -6252 1602 195 0 11 chr9 44919860 44920147 -72942480 + AluJb SINE Alu 1 284 -28 350 131 40 0 chr9 44920147 44920246 -72942381 + (TA)n Simple_repeat Simple_repeat 1 103 0 209 135 27 0 chr9 44920282 44920319 -72942308 + (TA)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr9 44920394 44920416 -72942211 + AT_rich Low_complexity Low_complexity 1 22 0 392 191 11 0 chr9 44920425 44920514 -72942113 + (TA)n Simple_repeat Simple_repeat 2 91 0 7251 215 73 52 chr9 44920780 44923060 -72939567 + L1ME1 LINE L1 2807 5145 -1395 1714 118 87 0 chr9 44923060 44923314 -72939313 - AluSq SINE Alu -9 304 29 7251 215 73 52 chr9 44923314 44923480 -72939147 + L1ME1 LINE L1 5145 5306 -1234 3199 221 75 10 chr9 44923489 44924299 -72938328 + L1ME1 LINE L1 5689 6551 -9 213 121 0 0 chr9 44924824 44924857 -72937770 + (TTTC)n Simple_repeat Simple_repeat 2 34 0 349 301 30 60 chr9 44925656 44925822 -72936805 + MIR3 SINE MIR 17 177 -31 494 223 11 128 chr9 44925935 44926134 -72936493 - MER5A DNA MER1_type 0 189 5 443 250 194 13 chr9 44928192 44928396 -72934231 + MIR SINE MIR 24 262 0 389 355 14 12 chr9 44928552 44928702 -72933925 + MIR SINE MIR 2 153 -55 189 305 147 11 chr9 44929465 44929560 -72933067 - L2 LINE L2 -5 3267 3160 2244 157 6 3 chr9 44929706 44930056 -72932571 - MLT1A1 LTR MaLR -13 352 2 269 304 6 82 chr9 44930388 44930559 -72932068 - MIR3 SINE MIR -45 163 6 260 302 23 47 chr9 44930549 44930678 -72931949 - MIR SINE MIR -56 152 27 * 242 73 24 0 chr9 44931026 44931067 -72931560 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 277 330 10 19 chr9 44931077 44931180 -72931447 + MER5A DNA MER1_type 63 164 -25 189 175 0 0 chr9 44931866 44931906 -72930721 + (CA)n Simple_repeat Simple_repeat 1 40 0 469 259 0 79 chr9 44932587 44932726 -72929901 + MER91B DNA MER1_type 3 130 -60 1640 153 33 18 chr9 44934126 44934401 -72928226 - AluJo SINE Alu -19 293 15 525 307 105 14 chr9 44934746 44935042 -72927585 + LTR33 LTR ERVL 1 323 -198 409 220 34 25 chr9 44935068 44935186 -72927441 + LTR33 LTR ERVL 403 521 0 339 283 82 0 chr9 44935374 44935527 -72927100 - MIR SINE MIR -65 143 25 411 301 59 61 chr9 44936749 44937072 -72925555 - L1ME LINE L1 -369 5793 5470 1994 95 3 32 chr9 44937109 44937392 -72925235 - AluY SINE Alu -32 279 5 2202 130 0 3 chr9 44937397 44937704 -72924923 - AluSx SINE Alu -6 306 1 240 222 171 17 chr9 44937709 44937826 -72924801 - L1ME LINE L1 -680 5482 5348 337 274 53 16 chr9 44937831 44938021 -72924606 - L1ME LINE L1 -832 5314 5118 183 80 0 0 chr9 44938627 44938652 -72923975 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 1500 244 29 21 chr9 44939979 44940364 -72922263 - L1ME3A LINE L1 -6 6164 5777 822 228 67 57 chr9 44940377 44940741 -72921886 - L1ME3A LINE L1 -591 5571 5208 289 280 90 10 chr9 44941045 44941145 -72921482 - L2 LINE L2 -10 3262 3155 939 260 76 48 chr9 44941786 44942220 -72920407 - MLT1J1 LTR MaLR 0 446 1 1022 206 106 97 chr9 44942225 44942575 -72920052 + MLT1A1 LTR MaLR 1 353 -12 286 374 17 9 chr9 44944275 44944390 -72918237 + MIR3 SINE MIR 3 118 -90 396 262 0 0 chr9 44944390 44944493 -72918134 - L1ME3A LINE L1 -198 5972 5870 541 159 0 11 chr9 44944493 44944581 -72918046 - Tigger5 DNA MER2_type 0 2323 2237 494 179 12 0 chr9 44944592 44944676 -72917951 + Tigger5 DNA MER2_type 1 85 -2238 349 235 0 0 chr9 44944700 44944768 -72917859 - Tigger5 DNA MER2_type -5 2318 2251 279 226 0 0 chr9 44944739 44944792 -72917835 - Tigger5 DNA MER2_type -2270 53 1 * 571 215 117 0 chr9 44944794 44944957 -72917670 - L1ME3A LINE L1 -301 5869 5688 1321 239 48 48 chr9 44944988 44945382 -72917245 - LTR16A LTR ERVL -2 448 55 274 238 0 0 chr9 44945486 44945549 -72917078 - L1ME3A LINE L1 -566 5604 5542 585 274 25 65 chr9 44946196 44946473 -72916154 - L1MC5 LINE L1 -35 7926 7661 2197 250 37 45 chr9 44946484 44947747 -72914880 - L1MCc LINE L1 -4818 2123 654 1363 244 81 12 chr9 44947911 44948317 -72914310 - L1MCc LINE L1 -5983 440 7 508 193 55 21 chr9 44948377 44948522 -72914105 - L1MC5 LINE L1 -385 7576 7427 23 54 0 0 chr9 44948643 44948680 -72913947 + AT_rich Low_complexity Low_complexity 1 37 0 1597 126 8 0 chr9 44948815 44949053 -72913574 - L1PA14 LINE L1 -11 6150 5911 261 269 0 45 chr9 44949315 44949382 -72913245 - L2 LINE L2 -8 3264 3201 476 200 55 21 chr9 44949457 44949602 -72913025 - L1MC5 LINE L1 -385 7576 7427 252 216 68 14 chr9 44949612 44949686 -72912941 - L1MCc LINE L1 -6339 84 7 1824 151 7 3 chr9 44949710 44949995 -72912632 - AluSx SINE Alu -26 286 1 210 354 192 0 chr9 44950443 44950542 -72912085 + L2 LINE L2 3154 3271 -1 239 276 13 0 chr9 44950549 44950625 -72912002 + GA-rich Low_complexity Low_complexity 3 79 0 25 51 0 0 chr9 44950806 44950845 -72911782 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr9 44950932 44950958 -72911669 + AT_rich Low_complexity Low_complexity 1 26 0 639 168 0 0 chr9 44952310 44952411 -72910216 + FLAM_A SINE Alu 34 134 -8 2188 112 3 0 chr9 44952420 44952705 -72909922 + AluSx SINE Alu 6 291 -21 350 311 96 34 chr9 44952872 44953081 -72909546 - MIR SINE MIR -18 244 23 280 339 108 27 chr9 44953180 44953366 -72909261 + MIR3 SINE MIR 2 202 -6 334 252 155 10 chr9 44953431 44953534 -72909093 - L2 LINE L2 0 3272 3155 216 179 0 0 chr9 44953855 44953894 -72908733 + (ATCG)n Simple_repeat Simple_repeat 2 40 0 458 294 185 0 chr9 44954195 44954379 -72908248 + MIR SINE MIR 12 229 -33 633 220 0 0 chr9 44954476 44954585 -72908042 + MER81 DNA DNA 6 114 0 739 263 0 45 chr9 44954825 44955004 -72907623 - MER5B DNA MER1_type -1 177 7 659 186 36 0 chr9 44955598 44955738 -72906889 + L1MC1 LINE L1 5800 5944 -389 2101 109 0 64 chr9 44955783 44956112 -72906515 - AluSq SINE Alu -5 308 1 311 225 115 60 chr9 44956163 44956345 -72906282 - L1ME4a LINE L1 -57 6064 5873 703 138 95 0 chr9 44956361 44956477 -72906150 + L1PB4 LINE L1 6027 6153 -3 1330 146 0 15 chr9 44956600 44956806 -72905821 + AluJb SINE Alu 87 289 -23 260 208 13 65 chr9 44956878 44956955 -72905672 - L1ME4a LINE L1 -482 5639 5567 483 275 214 6 chr9 44958520 44958698 -72903929 - MIR SINE MIR -31 231 17 254 256 12 37 chr9 44958744 44958826 -72903801 - MIR SINE MIR -116 146 67 380 319 59 7 chr9 44959101 44959236 -72903391 + L2 LINE L2 2918 3059 -254 1260 229 78 43 chr9 44959236 44959658 -72902969 - MLT1C LTR MaLR 0 467 16 525 248 48 53 chr9 44959723 44959929 -72902698 + L2 LINE L2 3109 3313 0 2612 10 38 0 chr9 44960431 44960720 -72901907 + AluYa5 SINE Alu 1 300 -11 2142 112 20 0 chr9 44961201 44961524 -72901103 + AluSx SINE Alu 1 312 0 302 259 12 12 chr9 44963815 44963900 -72898727 + CT-rich Low_complexity Low_complexity 4 88 0 780 269 85 55 chr9 44963916 44964528 -72898099 - L2 LINE L2 -54 3259 2624 407 278 46 33 chr9 44964877 44965028 -72897599 - MIR3 SINE MIR -15 193 41 1741 172 0 25 chr9 44965029 44965320 -72897307 + AluJb SINE Alu 1 285 -27 333 0 0 0 chr9 44965320 44965357 -72897270 + (CA)n Simple_repeat Simple_repeat 2 38 0 1741 172 0 25 chr9 44965357 44965385 -72897242 + AluJb SINE Alu 285 312 0 2343 107 86 3 chr9 44966093 44966429 -72896198 + THE1B LTR MaLR 1 364 0 221 200 0 0 chr9 44966955 44966995 -72895632 - L2 LINE L2 -3 3310 3271 3623 198 20 10 chr9 44967039 44967735 -72894892 - L1MB8 LINE L1 -5 6173 5471 400 338 61 14 chr9 44967931 44968144 -72894483 + MIR SINE MIR 34 256 -6 372 43 0 0 chr9 44968230 44968276 -72894351 + (CA)n Simple_repeat Simple_repeat 1 46 0 691 304 78 13 chr9 44968607 44968837 -72893790 + MIR SINE MIR 13 257 -5 225 0 0 0 chr9 44970201 44970226 -72892401 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1972 109 4 7 chr9 44970231 44970507 -72892120 - AluSx SINE Alu 0 312 38 2292 94 3 28 chr9 44971113 44971433 -72891194 - AluSx SINE Alu 0 312 1 454 348 50 74 chr9 44971841 44972140 -72890487 - L2 LINE L2 -1 3271 2980 821 155 0 70 chr9 44972498 44972640 -72889987 + FLAM_A SINE Alu 1 132 -1 328 284 100 68 chr9 44973307 44973497 -72889130 + MER91A DNA MER1_type 1 196 0 24 0 0 0 chr9 44974042 44974066 -72888561 + AT_rich Low_complexity Low_complexity 1 24 0 205 359 16 0 chr9 44974079 44974143 -72888484 - L2 LINE L2 -3 3269 3205 276 267 118 44 chr9 44974240 44974375 -72888252 + MIR3 SINE MIR 37 181 -27 427 235 76 23 chr9 44974384 44974516 -72888111 - MIR SINE MIR -73 189 51 198 282 39 68 chr9 44975157 44975260 -72887367 - MIR3 SINE MIR -13 195 96 657 230 14 0 chr9 44975269 44975408 -72887219 + MER5B DNA MER1_type 20 160 -18 434 318 8 23 chr9 44975764 44975893 -72886734 - L2 LINE L2 -3 3269 3143 1159 228 9 13 chr9 44976661 44976885 -72885742 - MER58A DNA MER1_type 0 224 2 285 268 93 10 chr9 44978026 44978123 -72884504 + L2 LINE L2 3168 3272 0 1581 137 58 50 chr9 44978821 44979164 -72883463 + MER4A LTR ERV1 1 346 -318 667 139 192 82 chr9 44979169 44979422 -72883205 + MER4C LTR ERV1 153 444 -21 261 0 0 0 chr9 44981069 44981098 -72881529 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 44982833 44982857 -72879770 + AT_rich Low_complexity Low_complexity 1 24 0 2042 130 3 0 chr9 44983454 44983769 -72878858 - AluSx SINE Alu 0 316 1 1997 140 77 3 chr9 44983982 44984318 -72878309 - MER47A DNA MER2_type 0 366 6 573 256 56 31 chr9 44984513 44984673 -72877954 - MER5B DNA MER1_type 0 178 15 479 174 54 0 chr9 44984727 44984819 -72877808 - MER5A DNA MER1_type -83 106 10 370 231 31 128 chr9 44984908 44985103 -72877524 + L2 LINE L2 2248 2423 -891 991 267 160 8 chr9 44985103 44985616 -72877011 + L2 LINE L2 2701 3289 -24 2499 242 49 65 chr9 44986070 44986860 -72875767 - MER21B LTR ERV1 -77 786 9 2502 134 9 59 chr9 44986861 44987285 -72875342 + MER57A LTR ERV1 1 403 0 381 349 86 4 chr9 44987956 44988211 -72874416 + L3b LINE CR1 1122 1397 -186 26 0 0 0 chr9 44988357 44988383 -72874244 + AT_rich Low_complexity Low_complexity 1 26 0 2672 188 33 4 chr9 44990256 44990768 -72871859 - MER74A LTR ERVL -4 554 28 2499 70 0 0 chr9 44990925 44991227 -72871400 - AluY SINE Alu -9 302 1 470 230 152 52 chr9 44991245 44991393 -72871234 + MIR SINE MIR 53 226 -36 5548 122 40 37 chr9 44991393 44992262 -72870365 - MER4D LTR ERV1 0 872 1 470 230 152 52 chr9 44992262 44992304 -72870323 + MIR SINE MIR 226 262 0 1644 97 0 0 chr9 44992322 44992528 -72870099 - AluSc SINE Alu -6 303 98 1203 217 108 22 chr9 44993088 44993146 -72869481 - MER58B DNA MER1_type -2079 341 289 1982 168 12 90 chr9 44993146 44993569 -72869058 - MLT1B LTR MaLR 0 390 1 1203 217 108 22 chr9 44993569 44993824 -72868803 - MER58B DNA MER1_type -2131 289 1 731 176 162 0 chr9 44994805 44994953 -72867674 + MER5A DNA MER1_type 12 183 -6 702 191 0 23 chr9 44994961 44995092 -72867535 + FLAM_A SINE Alu 1 128 -5 2114 116 0 10 chr9 44995108 44995400 -72867227 + AluSx SINE Alu 13 301 -11 447 305 80 42 chr9 44996709 44996948 -72865679 - MIR SINE MIR 0 262 15 2231 102 0 37 chr9 44997637 44997960 -72864667 - AluSp SINE Alu -2 311 1 26 30 0 0 chr9 44998207 44998240 -72864387 + AT_rich Low_complexity Low_complexity 1 33 0 453 264 40 0 chr9 44998359 44998484 -72864143 - Charlie8 DNA MER1_type -2204 213 84 294 209 192 39 chr9 44999230 44999464 -72863163 + L1ME LINE L1 716 985 -5085 532 261 80 9 chr9 44999542 44999792 -72862835 + L1ME LINE L1 1013 1310 -4862 939 288 119 36 chr9 44999804 45000365 -72862262 + L1ME LINE L1 1378 1891 -4189 343 134 0 110 chr9 45000365 45000447 -72862180 + L1PA10 LINE L1 6096 6168 0 939 288 119 36 chr9 45000447 45000565 -72862062 + L1ME LINE L1 1891 1998 -4082 1600 193 44 0 chr9 45000565 45000674 -72861953 + AluJo SINE Alu 11 114 -198 378 0 0 0 chr9 45000674 45000716 -72861911 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1600 193 44 0 chr9 45000716 45000880 -72861747 + AluJo SINE Alu 114 296 -16 939 288 119 36 chr9 45000880 45001379 -72861248 + L1ME LINE L1 1998 2680 -3400 333 233 25 42 chr9 45001422 45001542 -72861085 + L1ME LINE L1 3837 3954 -2126 666 251 84 5 chr9 45001867 45002058 -72860569 + MIR SINE MIR 40 245 -17 1652 138 0 0 chr9 45002749 45002980 -72859647 + AluSx SINE Alu 1 231 -81 863 211 50 6 chr9 45004057 45004237 -72858390 + MER5A DNA MER1_type 1 188 -1 663 154 101 53 chr9 45004913 45005082 -72857545 + MER96B DNA MER1_type? 3 179 -238 386 344 12 25 chr9 45005602 45005765 -72856862 + MIR3 SINE MIR 42 202 -6 256 270 202 0 chr9 45006049 45006138 -72856489 - L2 LINE L2 0 3313 3207 395 244 0 0 chr9 45006170 45006248 -72856379 + Tigger3(Golem) DNA MER2_type 3 80 -2949 859 109 0 0 chr9 45006379 45006489 -72856138 + Tigger3(Golem) DNA MER2_type 2920 3029 0 2533 74 0 0 chr9 45006552 45006861 -72855766 + AluY SINE Alu 2 310 -1 1729 172 26 13 chr9 45009005 45009313 -72853314 - AluJo SINE Alu 0 312 1 758 205 246 13 chr9 45009313 45009630 -72852997 + MER113 DNA MER1_type? 85 475 -46 459 0 0 0 chr9 45009941 45009992 -72852635 + (TG)n Simple_repeat Simple_repeat 1 51 0 246 291 100 61 chr9 45012466 45012696 -72849931 - L2 LINE L2 0 3313 3075 264 371 67 28 chr9 45013006 45013184 -72849443 - L3b LINE CR1 -150 1433 1249 1947 150 13 3 chr9 45013194 45013500 -72849127 + AluSx SINE Alu 1 309 -3 2234 107 20 3 chr9 45013545 45013844 -72848783 + AluSg SINE Alu 1 304 -6 465 296 56 6 chr9 45016705 45016867 -72845760 + MIR SINE MIR 82 251 -11 302 180 0 16 chr9 45016883 45016944 -72845683 - MIR SINE MIR -62 146 87 22 35 0 0 chr9 45016998 45017027 -72845600 + AT_rich Low_complexity Low_complexity 1 29 0 3326 177 91 9 chr9 45020097 45020768 -72841859 - L1MB2 LINE L1 0 6171 5446 1687 229 89 35 chr9 45022986 45023471 -72839156 + MLT1E LTR MaLR 15 525 -68 231 186 0 0 chr9 45023621 45023664 -72838963 + MLT1E LTR MaLR 521 563 -4 199 341 24 0 chr9 45023683 45023765 -72838862 + MIR SINE MIR 178 261 -1 5886 80 9 1 chr9 45025341 45026127 -72836500 - L1PA13 LINE L1 -19 6144 5353 2373 82 0 7 chr9 45026946 45027249 -72835378 + AluY SINE Alu 1 301 -10 326 220 15 114 chr9 45028067 45028199 -72834428 - MER96B DNA MER1_type? -3 414 296 1896 258 42 13 chr9 45028647 45029174 -72833453 - L1MCc LINE L1 -5068 1355 814 554 221 7 34 chr9 45029356 45029505 -72833122 - L1MCc LINE L1 -6015 408 264 22 70 0 0 chr9 45030120 45030163 -72832464 + AT_rich Low_complexity Low_complexity 1 43 0 1743 239 169 27 chr9 45030494 45031305 -72831322 + L1MC4a LINE L1 5308 6233 -1575 1270 141 41 29 chr9 45031474 45031716 -72830911 + AluJb SINE Alu 24 268 -44 2009 151 0 7 chr9 45032333 45032512 -72830115 - AluJb SINE Alu -10 302 124 360 64 0 0 chr9 45032512 45032559 -72830068 + (TG)n Simple_repeat Simple_repeat 2 48 0 2009 151 0 7 chr9 45032559 45032683 -72829944 - AluJb SINE Alu -188 124 1 237 259 0 17 chr9 45033036 45033094 -72829533 - L1ME LINE L1 -195 5926 5870 219 259 98 56 chr9 45033245 45033388 -72829239 - MIR SINE MIR -28 234 86 1093 306 22 29 chr9 45033599 45034011 -72828616 - MLT1I LTR MaLR 0 409 1 202 235 98 0 chr9 45034598 45034649 -72827978 + L2 LINE L2 3217 3272 0 27 0 0 0 chr9 45035114 45035141 -72827486 + AT_rich Low_complexity Low_complexity 1 27 0 418 193 50 0 chr9 45035559 45035655 -72826972 - MER5A DNA MER1_type -84 105 4 531 310 49 13 chr9 45035695 45035921 -72826706 + MLT1L LTR MaLR 43 276 -339 227 328 0 0 chr9 45036183 45036250 -72826377 - MER112 DNA MER1_type -13 247 181 359 314 52 87 chr9 45036401 45036978 -72825649 + L2 LINE L2 2182 2738 -576 1597 162 55 0 chr9 45037016 45037287 -72825340 + AluJb SINE Alu 3 288 -24 352 359 71 39 chr9 45037339 45037748 -72824879 + L2 LINE L2 2851 3272 0 881 323 28 9 chr9 45039290 45039609 -72823018 - LTR16A LTR ERVL -6 444 120 349 252 104 0 chr9 45039629 45039744 -72822883 - LTR50 LTR ERVL -343 452 326 299 253 32 11 chr9 45039802 45039897 -72822730 - LTR50 LTR ERVL -587 208 112 332 331 14 20 chr9 45039950 45040098 -72822529 + MER102b DNA MER1_type 171 317 -24 204 103 0 0 chr9 45040967 45040996 -72821631 - MIR SINE MIR -13 249 221 240 254 0 0 chr9 45041119 45041178 -72821449 - MER113 DNA MER1_type? -125 396 338 1783 176 7 0 chr9 45041309 45041610 -72821017 - AluJo SINE Alu -9 303 1 628 223 31 49 chr9 45041610 45041757 -72820870 - MER113 DNA MER1_type? -268 253 110 1872 157 6 10 chr9 45041757 45042069 -72820558 + AluJb SINE Alu 1 311 -1 628 223 31 49 chr9 45042069 45042145 -72820482 - MER113 DNA MER1_type? -411 110 34 484 269 77 6 chr9 45042146 45042302 -72820325 + MIR SINE MIR 86 252 -10 545 174 41 158 chr9 45043164 45043270 -72819357 + MER5A DNA MER1_type 16 90 -99 2275 108 0 6 chr9 45043270 45043584 -72819043 + AluSx SINE Alu 1 312 0 545 174 41 158 chr9 45043584 45043673 -72818954 + MER5A DNA MER1_type 90 188 -1 2308 95 0 10 chr9 45043857 45044152 -72818475 - AluSx SINE Alu -20 292 1 293 258 79 11 chr9 45044593 45044682 -72817945 + L2 LINE L2 3164 3258 -14 385 243 0 37 chr9 45045006 45045113 -72817514 - L2 LINE L2 -8 3305 3203 2241 100 0 13 chr9 45045386 45045685 -72816942 + AluSg SINE Alu 1 295 -15 571 257 59 16 chr9 45046338 45046525 -72816102 + MIR SINE MIR 15 209 -53 319 257 115 0 chr9 45046625 45046738 -72815889 + MIR SINE MIR 116 241 -21 280 290 0 21 chr9 45047859 45047952 -72814675 - MIR SINE MIR -10 252 162 1254 232 82 23 chr9 45047953 45048275 -72814352 + LTR52 LTR ERVL 1 351 -70 360 0 0 0 chr9 45048275 45048315 -72814312 + (TG)n Simple_repeat Simple_repeat 1 40 0 1254 232 82 23 chr9 45048315 45048384 -72814243 + LTR52 LTR ERVL 351 415 -6 318 186 0 14 chr9 45048384 45048454 -72814173 - MIR SINE MIR -100 162 94 847 124 8 0 chr9 45048633 45048762 -72813865 - AluSp/q SINE Alu -13 300 171 1299 117 6 0 chr9 45048862 45049033 -72813594 - AluSx SINE Alu -138 174 3 669 293 11 5 chr9 45049033 45049224 -72813403 - MIR SINE MIR -66 196 5 2460 88 16 48 chr9 45050485 45050861 -72811766 - THE1B LTR MaLR 0 364 1 320 256 165 16 chr9 45050899 45051020 -72811607 - MIR3 SINE MIR -50 158 20 428 262 60 34 chr9 45051681 45051830 -72810797 - MIR SINE MIR -8 254 102 2695 144 16 29 chr9 45051960 45052181 -72810446 - L1MC3 LINE L1 -118 7667 7445 2284 81 14 0 chr9 45052181 45052478 -72810149 - AluSp SINE Alu -12 301 1 2695 144 16 29 chr9 45052478 45052741 -72809886 - L1MC3 LINE L1 -340 7445 7189 304 297 11 0 chr9 45052741 45052832 -72809795 - MLT1F1 LTR MaLR -442 125 34 1546 305 19 24 chr9 45052914 45053530 -72809097 - L1MC4a LINE L1 -1941 5867 5255 205 213 109 56 chr9 45053956 45054081 -72808546 - L2 LINE L2 -221 3051 2915 574 283 35 0 chr9 45054980 45055153 -72807474 - MIR SINE MIR -51 211 33 632 162 33 133 chr9 45055682 45055742 -72806885 + MER5A DNA MER1_type 1 65 -124 1920 189 26 0 chr9 45055742 45056086 -72806541 - L1MB5 LINE L1 -9 6165 5813 632 162 33 133 chr9 45056086 45056235 -72806392 + MER5A DNA MER1_type 65 189 0 285 279 71 84 chr9 45056877 45057031 -72805596 - L2 LINE L2 0 3272 3121 427 279 39 78 chr9 45057717 45057975 -72804652 + L1ME3A LINE L1 5663 5910 -211 2010 152 0 0 chr9 45058005 45058314 -72804313 + AluSq SINE Alu 1 309 -4 771 260 153 13 chr9 45058316 45058624 -72804003 - HsTC2 DNA Tc2 -34 1864 1514 686 291 21 33 chr9 45058753 45058994 -72803633 - HsTC2 DNA Tc2 -372 1526 1289 537 224 22 30 chr9 45059027 45059161 -72803466 - HsTC2 DNA Tc2 -1765 133 1 1889 157 7 0 chr9 45059199 45059526 -72803101 + AluSx SINE Alu 1 329 0 702 274 114 57 chr9 45060034 45060472 -72802155 + MLT1H LTR MaLR 86 548 -1 197 288 17 0 chr9 45060562 45060621 -72802006 - L2 LINE L2 -8 3305 3246 239 227 84 34 chr9 45061064 45061183 -72801444 - L2 LINE L2 -211 3061 2937 1587 98 17 38 chr9 45061743 45061978 -72800649 - MER30 DNA MER1_type 0 230 1 2364 101 0 7 chr9 45062710 45063018 -72799609 + AluSq SINE Alu 1 306 -7 10562 75 2 3 chr9 45063074 45064415 -72798212 + L1P3 LINE L1 2 1341 -5120 1557 30 5 5 chr9 45064409 45064601 -72798026 - L1PA4 LINE L1 -759 5387 5195 * 5510 61 5 29 chr9 45064601 45065386 -72797241 + L1PA4 LINE L1 5389 6155 0 228 271 193 36 chr9 45066187 45066327 -72796300 + MIR3 SINE MIR 34 195 -13 2299 99 0 43 chr9 45066372 45066561 -72796066 - AluSq SINE Alu -5 308 137 249 57 0 0 chr9 45066561 45066596 -72796031 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2299 99 0 43 chr9 45066596 45066728 -72795899 - AluSq SINE Alu -176 137 1 238 317 98 8 chr9 45066848 45066971 -72795656 - MIR SINE MIR -76 186 53 1464 129 24 108 chr9 45067206 45067538 -72795089 - L1MA2 LINE L1 0 6304 6001 1115 137 0 36 chr9 45067688 45067856 -72794771 + AluSq SINE Alu 1 162 -151 350 260 0 0 chr9 45068451 45068524 -72794103 + Charlie8 DNA MER1_type 1 73 -2344 2176 117 0 20 chr9 45070115 45070415 -72792212 + AluSx SINE Alu 1 294 -18 2619 151 12 107 chr9 45071018 45071527 -72791100 + MLT2B2 LTR ERVL 1 452 -63 1811 167 28 0 chr9 45071527 45071814 -72790813 - AluJb SINE Alu -17 295 1 2619 151 12 107 chr9 45071814 45071873 -72790754 + MLT2B2 LTR ERVL 452 515 0 2019 151 10 3 chr9 45072025 45072324 -72790303 + AluSx SINE Alu 1 301 -11 2138 135 3 0 chr9 45072649 45072960 -72789667 + AluSx SINE Alu 1 312 0 712 258 5 15 chr9 45072968 45073166 -72789461 + LTR16A1 LTR ERVL 262 457 0 461 272 8 8 chr9 45073308 45073433 -72789194 - LTR33 LTR ERVL -28 493 369 1752 176 67 3 chr9 45073850 45074196 -72788431 + L1MA8 LINE L1 5912 6279 -12 2212 101 3 0 chr9 45074540 45075020 -72787607 + AluSq SINE Alu 1 481 0 440 272 15 7 chr9 45076971 45077107 -72785520 + MIR SINE MIR 13 149 -113 1760 166 3 13 chr9 45078134 45078448 -72784179 + AluSx SINE Alu 1 311 -1 324 300 18 0 chr9 45078561 45078671 -72783956 - MIR3 SINE MIR -52 156 45 293 250 0 15 chr9 45078744 45078812 -72783815 - HAL1 LINE L1 -11 2496 2430 467 99 0 0 chr9 45078881 45078952 -72783675 - Alu SINE Alu -7 305 235 973 133 0 7 chr9 45078952 45079095 -72783532 - AluSq/x SINE Alu -171 142 1 4707 126 58 72 chr9 45079100 45080109 -72782518 + pTR5 LTR ERV1 743 2029 -409 335 222 11 16 chr9 45080109 45080216 -72782411 + LTR30 LTR ERV1 375 478 -91 1296 75 0 16 chr9 45080239 45080425 -72782202 + pTR5 LTR ERV1 209 391 -2047 1366 250 141 64 chr9 45080425 45081285 -72781342 - HAL1 LINE L1 -160 2347 1422 192 354 82 0 chr9 45081296 45081443 -72781184 - MIR SINE MIR -10 252 94 491 311 117 25 chr9 45081465 45081748 -72780879 - MLT1I LTR MaLR -19 390 82 2870 213 57 5 chr9 45081755 45082370 -72780257 - MER99 DNA DNA -1 827 181 22 35 0 0 chr9 45082508 45082537 -72780090 + AT_rich Low_complexity Low_complexity 1 29 0 327 287 75 0 chr9 45083015 45083109 -72779518 - MER99 DNA DNA -726 102 2 540 96 0 0 chr9 45083557 45083630 -72778997 + AluS SINE Alu 2 74 -239 1560 238 140 61 chr9 45083768 45084094 -72778533 + L1MC4 LINE L1 7278 7577 -465 2457 60 23 0 chr9 45084094 45084394 -72778233 + AluY SINE Alu 1 307 -4 1560 238 140 61 chr9 45084394 45084776 -72777851 + L1MC4 LINE L1 7577 8042 0 22 0 0 0 chr9 45084838 45084860 -72777767 + AT_rich Low_complexity Low_complexity 1 22 0 361 268 73 62 chr9 45085257 45085436 -72777191 - L3 LINE CR1 -26 1551 1371 485 300 68 5 chr9 45085979 45086199 -72776428 - L3 LINE CR1 -205 1372 1139 702 246 62 0 chr9 45086646 45086825 -72775802 + MIR SINE MIR 62 251 -11 2471 80 0 3 chr9 45087308 45087610 -72775017 - AluY SINE Alu -10 301 1 267 211 0 164 chr9 45088025 45088153 -72774474 - MER102a DNA MER1_type -2 328 222 215 303 148 41 chr9 45088275 45088397 -72774230 + MIR SINE MIR 2 136 -126 23 0 0 0 chr9 45088955 45088978 -72773649 + AT_rich Low_complexity Low_complexity 1 23 0 624 123 118 107 chr9 45089251 45089438 -72773189 + MER53 DNA DNA 1 189 0 266 329 0 0 chr9 45089830 45089903 -72772724 - MIR3 SINE MIR -28 180 108 180 111 0 0 chr9 45089964 45089991 -72772636 + (TAG)n Simple_repeat Simple_repeat 1 27 0 * 201 274 0 0 chr9 45089989 45090062 -72772565 + GA-rich Low_complexity Low_complexity 3 75 0 283 256 58 16 chr9 45090170 45090291 -72772336 - L1ME4a LINE L1 -12 6109 5984 941 232 156 6 chr9 45090644 45091076 -72771551 + MLT1H LTR MaLR 4 548 -1 530 341 39 0 chr9 45092055 45092237 -72770390 - MIR SINE MIR -66 196 8 940 157 0 136 chr9 45092686 45092928 -72769699 + MER3 DNA MER1_type 1 209 0 672 283 37 25 chr9 45093094 45093144 -72769483 - MER102b DNA MER1_type -1089 339 291 1801 133 19 0 chr9 45093144 45093407 -72769220 + AluSx SINE Alu 1 268 -44 672 283 37 25 chr9 45093407 45093600 -72769027 - MER102b DNA MER1_type -1137 291 93 1458 257 81 15 chr9 45093619 45094078 -72768549 + LTR16C LTR ERVL 3 491 0 2312 94 0 0 chr9 45094229 45094517 -72768110 - AluSc SINE Alu -21 288 1 21 0 0 0 chr9 45094545 45094566 -72768061 + AT_rich Low_complexity Low_complexity 1 21 0 287 177 42 31 chr9 45098662 45098758 -72763869 + (CATATA)n Simple_repeat Simple_repeat 5 101 0 24146 81 6 8 chr9 45099242 45103343 -72759284 - L1PA7 LINE L1 -1 6153 2059 30 59 0 0 chr9 45103664 45103715 -72758912 + AT_rich Low_complexity Low_complexity 1 51 0 234 227 0 0 chr9 45103721 45103765 -72758862 - MIR SINE MIR -68 140 97 609 310 62 25 chr9 45103771 45104013 -72758614 + MIR SINE MIR 3 253 -9 2294 96 3 0 chr9 45104851 45105143 -72757484 + AluSx SINE Alu 1 293 -19 210 222 0 0 chr9 45105143 45105179 -72757448 + polypurine Low_complexity Low_complexity 1 36 0 336 254 177 0 chr9 45105234 45105364 -72757263 + MIR SINE MIR 99 251 -11 558 286 51 20 chr9 45106540 45106786 -72755841 - MIR SINE MIR -4 258 6 185 299 30 15 chr9 45106803 45106870 -72755757 - L2 LINE L2 -5 3267 3200 326 308 11 0 chr9 45107131 45107241 -72755386 + MIR SINE MIR 47 141 -67 2016 136 3 26 chr9 45107316 45107625 -72755002 + AluSx SINE Alu 1 302 -10 5355 92 13 3 chr9 45108051 45108732 -72753895 - LTR8 LTR ERV1 0 691 4 320 235 31 31 chr9 45108732 45108824 -72753803 + MIR SINE MIR 106 197 -65 1570 133 49 4 chr9 45110440 45110703 -72751924 - L1MA7 LINE L1 0 6291 6017 496 256 32 0 chr9 45110703 45110828 -72751799 + MIR SINE MIR 58 186 -76 1033 323 115 35 chr9 45111367 45112392 -72750235 + L2 LINE L2 1727 2833 -481 468 283 68 54 chr9 45112530 45112809 -72749818 + MLT1J LTR MaLR 229 511 0 442 304 20 104 chr9 45112827 45112942 -72749685 + L2 LINE L2 2804 2927 -386 2046 151 0 0 chr9 45112942 45113254 -72749373 - AluSx SINE Alu 0 312 1 442 304 20 104 chr9 45113254 45113687 -72748940 + L2 LINE L2 2927 3306 -7 2318 99 6 10 chr9 45113687 45114000 -72748627 + AluSx SINE Alu 1 312 0 1178 150 16 42 chr9 45114497 45114690 -72747937 - MER5A DNA MER1_type -1 188 1 2306 118 3 0 chr9 45115475 45115781 -72746846 - AluSp SINE Alu -6 307 1 363 344 6 25 chr9 45115810 45115970 -72746657 + MIR SINE MIR 106 262 0 574 256 0 24 chr9 45116237 45116405 -72746222 - MIR SINE MIR 0 262 99 2171 127 0 10 chr9 45116422 45116729 -72745898 + AluSx SINE Alu 1 304 -8 279 297 0 0 chr9 45117139 45117213 -72745414 + MIR SINE MIR 110 183 -79 1111 300 136 41 chr9 45118688 45119224 -72743403 + L1MEd LINE L1 2 588 -5531 673 264 52 64 chr9 45119252 45119673 -72742954 + L1MEd LINE L1 760 1175 -4944 2187 227 76 72 chr9 45119747 45120765 -72741862 + L1MC5 LINE L1 6638 7659 -302 1817 145 64 14 chr9 45120873 45121169 -72741458 - AluSx SINE Alu -1 311 1 40 0 0 0 chr9 45121684 45121724 -72740903 + AT_rich Low_complexity Low_complexity 1 40 0 279 309 124 0 chr9 45122329 45122620 -72740007 + L1MEd LINE L1 3151 3477 -2652 5401 152 35 5 chr9 45123026 45123904 -72738723 + L1MC1 LINE L1 5423 6327 -6 561 41 102 0 chr9 45124073 45124220 -72738407 + (TA)n Simple_repeat Simple_repeat 1 162 0 269 180 0 0 chr9 45124234 45124284 -72738343 + L1MC/D LINE L1 5447 5496 -746 943 152 33 0 chr9 45124305 45124456 -72738171 - AluJb SINE Alu -19 293 138 6784 122 21 27 chr9 45125304 45125407 -72737220 + L1MA5A LINE L1 4992 5094 -1203 2343 109 0 3 chr9 45125407 45125711 -72736916 + AluSc SINE Alu 1 303 -6 6784 122 21 27 chr9 45125711 45126738 -72735889 + L1MA5A LINE L1 5094 6111 -186 1988 142 3 10 chr9 45126738 45127040 -72735587 - AluSx SINE Alu -12 300 1 6784 122 21 27 chr9 45127040 45127205 -72735422 + L1MA5A LINE L1 6111 6275 -22 35 0 0 0 chr9 45127205 45127240 -72735387 + AT_rich Low_complexity Low_complexity 1 35 0 673 228 74 19 chr9 45127659 45127821 -72734806 + MLT2E LTR ERVL 12 182 -446 615 216 40 99 chr9 45127961 45128183 -72734444 - MIR SINE MIR -2 260 52 437 247 25 24 chr9 45128193 45128331 -72734296 + MIR3 SINE MIR 65 204 -4 3403 256 66 20 chr9 45128947 45130960 -72731667 + ERVL LTR ERVL 2577 4732 -922 262 278 41 10 chr9 45130960 45131057 -72731570 - L1ME LINE L1 -357 5764 5665 247 326 94 36 chr9 45131057 45131195 -72731432 + L2 LINE L2 3127 3272 0 246 171 0 0 chr9 45131252 45131293 -72731334 + MLT2E LTR ERVL 248 288 -340 1232 201 49 47 chr9 45131910 45132214 -72730413 - MLT1B LTR MaLR 0 390 65 2301 142 12 0 chr9 45132214 45132553 -72730074 - MER2 DNA MER2_type 0 344 2 1232 201 49 47 chr9 45132553 45132613 -72730014 - MLT1B LTR MaLR -325 65 7 1188 248 72 14 chr9 45133368 45133731 -72728896 + LTR16C LTR ERVL 104 487 -4 1392 157 19 91 chr9 45134106 45134296 -72728331 + L1MB3 LINE L1 5867 6023 -160 1977 146 0 31 chr9 45134296 45134618 -72728009 + AluJo SINE Alu 1 312 0 1392 157 19 91 chr9 45134618 45134769 -72727858 + L1MB3 LINE L1 6023 6183 0 201 159 0 0 chr9 45136139 45136183 -72726444 + T-rich Low_complexity Low_complexity 1 44 0 1601 251 84 27 chr9 45136701 45137179 -72725448 + LTR40a LTR ERVL 1 505 -14 4391 148 49 23 chr9 45137187 45137984 -72724643 - L1MA4A LINE L1 0 6303 5486 201 121 0 0 chr9 45138309 45138342 -72724285 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 691 236 66 6 chr9 45138437 45138619 -72724008 + MIR SINE MIR 58 250 -12 575 307 60 20 chr9 45138820 45139071 -72723556 - MIR SINE MIR -1 261 1 184 293 27 64 chr9 45139136 45139324 -72723303 - L2 LINE L2 -922 2392 2212 359 304 65 36 chr9 45139643 45139805 -72722822 + MIR SINE MIR 16 180 -63 1971 260 109 8 chr9 45139870 45140374 -72722253 + MLT1H1 LTR MaLR 1 555 0 215 216 0 0 chr9 45140526 45140563 -72722064 + polypyrimidine Low_complexity Low_complexity 1 37 0 561 220 117 112 chr9 45140630 45140853 -72721774 - MER58A DNA MER1_type 0 224 1 2196 132 0 0 chr9 45142437 45142741 -72719886 - AluSq SINE Alu -5 308 5 379 264 83 107 chr9 45143192 45143354 -72719273 - MLT1J LTR MaLR -193 318 166 1685 164 3 31 chr9 45143354 45143647 -72718980 + AluJo SINE Alu 1 285 -27 379 264 83 107 chr9 45143647 45143810 -72718817 - MLT1J LTR MaLR -345 166 1 791 242 6 11 chr9 45143831 45144009 -72718618 - MER69A DNA AcHobo 0 177 1 2149 135 0 3 chr9 45144961 45145272 -72717355 - AluSx SINE Alu -2 310 1 285 319 156 44 chr9 45145575 45146139 -72716488 + L2 LINE L2 2211 2837 -477 192 333 53 114 chr9 45146236 45146500 -72716127 + L2 LINE L2 3025 3272 0 432 205 13 0 chr9 45146521 45146599 -72716028 - Tigger5 DNA MER2_type 0 2323 2245 300 213 49 0 chr9 45146602 45146663 -72715964 + Tigger5 DNA MER2_type 2254 2317 -6 429 218 0 0 chr9 45146668 45146746 -72715881 - Tigger5 DNA MER2_type -2244 79 2 253 357 80 56 chr9 45146952 45147165 -72715462 - L2 LINE L2 -84 3188 2971 253 344 86 25 chr9 45147231 45147474 -72715153 - L2 LINE L2 -467 2847 2590 680 228 155 10 chr9 45147474 45147667 -72714960 + MIR SINE MIR 2 222 -40 390 360 67 48 chr9 45147725 45148230 -72714397 - L2 LINE L2 -733 2581 2067 531 306 112 42 chr9 45148943 45149397 -72713230 - L2 LINE L2 -1 3312 2827 1849 146 20 7 chr9 45149506 45149801 -72712826 + AluJb SINE Alu 3 301 -11 462 114 0 0 chr9 45149801 45149871 -72712756 + (GGA)n Simple_repeat Simple_repeat 1 70 0 755 307 46 41 chr9 45149909 45150326 -72712301 - L2 LINE L2 -639 2675 2257 225 0 0 0 chr9 45150388 45150413 -72712214 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1377 189 87 8 chr9 45150418 45150682 -72711945 - AluJo SINE Alu -26 286 2 661 228 154 0 chr9 45151104 45151253 -72711374 - MER5A DNA MER1_type -2 187 16 2060 142 6 10 chr9 45151871 45152182 -72710445 + AluSx SINE Alu 1 310 -2 1065 167 23 0 chr9 45152926 45153122 -72709505 + AluSg/x SINE Alu 115 310 0 2348 211 57 64 chr9 45153123 45154247 -72708380 + L1ME3A LINE L1 4697 5809 -353 1149 230 9 18 chr9 45154247 45154473 -72708154 + MER58A DNA MER1_type 1 224 0 1136 167 25 10 chr9 45154502 45154700 -72707927 + AluJo SINE Alu 86 286 -26 1336 209 39 81 chr9 45154733 45155140 -72707487 - MLT2C1 LTR ERVL 0 397 8 314 299 43 17 chr9 45155176 45155293 -72707334 + L1ME3A LINE L1 5836 5955 -215 225 0 0 0 chr9 45155425 45155450 -72707177 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 245 243 86 46 chr9 45156226 45156378 -72706249 - L1ME4a LINE L1 -2 6119 5962 466 262 10 0 chr9 45156392 45156495 -72706132 - L2 LINE L2 -9 3304 3201 381 22 0 0 chr9 45156665 45156711 -72705916 + (TG)n Simple_repeat Simple_repeat 1 46 0 296 308 0 0 chr9 45157104 45157195 -72705432 - L1MC5 LINE L1 -532 7429 7339 527 239 148 0 chr9 45157211 45157366 -72705261 - MIR SINE MIR -76 186 9 559 122 0 0 chr9 45157402 45157484 -72705143 - L1MA5 LINE L1 -2 6298 6217 273 336 30 92 chr9 45157671 45157821 -72704806 - L2 LINE L2 -22 3250 3123 800 211 100 5 chr9 45157821 45158011 -72704616 - MER3 DNA MER1_type -1 208 1 273 336 30 92 chr9 45158011 45158131 -72704496 - L2 LINE L2 -149 3123 2997 224 322 195 7 chr9 45158132 45158281 -72704346 - MIR SINE MIR -74 188 12 307 313 151 42 chr9 45159310 45159575 -72703052 - L1ME4a LINE L1 -2031 5777 5484 332 235 151 0 chr9 45159609 45159728 -72702899 + MIR SINE MIR 100 236 -26 183 300 17 17 chr9 45160070 45160130 -72702497 - L3 LINE CR1 -2 1575 1516 328 304 80 43 chr9 45160486 45160624 -72702003 + HAL1 LINE L1 2274 2416 -91 4530 168 17 32 chr9 45160889 45161760 -72700867 - L1MB8 LINE L1 -10 6168 5313 881 262 158 27 chr9 45163143 45163509 -72699118 + MLT1J2 LTR MaLR 37 450 0 2883 56 8 32 chr9 45165004 45165378 -72697249 + L1PA5 LINE L1 5790 6154 0 420 310 89 6 chr9 45166012 45166170 -72696457 - MIR3 SINE MIR -18 190 20 194 105 26 0 chr9 45166211 45166249 -72696378 + GA-rich Low_complexity Low_complexity 3 41 0 864 267 23 113 chr9 45166908 45167252 -72695375 + MLT1H LTR MaLR 77 360 -189 1575 171 7 47 chr9 45167252 45167550 -72695077 + AluJo SINE Alu 1 286 -26 864 267 23 113 chr9 45167550 45167725 -72694902 + MLT1H LTR MaLR 360 549 0 692 288 191 12 chr9 45167725 45168060 -72694567 - MLT1H LTR MaLR -43 506 111 367 207 331 0 chr9 45169020 45169141 -72693486 + MIR3 SINE MIR 27 187 -21 244 132 0 0 chr9 45169285 45169323 -72693304 + L1MA9 LINE L1 6275 6312 0 202 154 15 15 chr9 45170786 45170851 -72691776 + C-rich Low_complexity Low_complexity 3 67 0 436 316 0 15 chr9 45172793 45172929 -72689698 - MIR3 SINE MIR -65 143 10 349 331 78 0 chr9 45173006 45173148 -72689479 + MIR3 SINE MIR 46 198 -10 215 191 0 0 chr9 45173466 45173508 -72689119 + L2 LINE L2 3271 3312 -1 208 291 73 0 chr9 45174146 45174201 -72688426 - MIR SINE MIR -68 140 82 1641 185 33 3 chr9 45174430 45174733 -72687894 - AluJb SINE Alu 0 312 1 1815 139 29 0 chr9 45174857 45175130 -72687497 + AluJo SINE Alu 22 302 -10 181 397 0 0 chr9 45176652 45176730 -72685897 + L2 LINE L2 3227 3304 -9 242 309 85 0 chr9 45176731 45176825 -72685802 - MARNA DNA Mariner -62 524 423 21 36 0 0 chr9 45176872 45176900 -72685727 + AT_rich Low_complexity Low_complexity 1 28 0 285 295 100 111 chr9 45177106 45177201 -72685426 + L2 LINE L2 3015 3110 -162 2407 176 41 17 chr9 45177201 45177616 -72685011 + MSTB LTR MaLR 1 425 -1 285 295 100 111 chr9 45177616 45177781 -72684846 + L2 LINE L2 3110 3272 0 414 222 0 0 chr9 45178243 45178315 -72684312 + MER5A DNA MER1_type 1 72 -117 2196 102 0 0 chr9 45178317 45178627 -72684000 + AluSq SINE Alu 1 310 0 314 324 113 15 chr9 45179029 45179233 -72683394 - MIR SINE MIR -19 243 20 931 334 64 5 chr9 45179305 45179742 -72682885 + L2 LINE L2 2229 2691 -623 306 314 59 13 chr9 45180466 45180619 -72682008 + L2 LINE L2 2729 2888 -426 5160 131 19 10 chr9 45181648 45182449 -72680178 + L1PA16 LINE L1 5356 6163 -3 1251 204 132 16 chr9 45182618 45182937 -72679690 - MLT1A1 LTR MaLR 0 365 10 661 262 0 63 chr9 45182975 45183196 -72679431 + MER112 DNA MER1_type 37 243 -17 513 251 54 24 chr9 45185166 45185333 -72677294 + L2 LINE L2 3137 3308 -5 519 324 98 57 chr9 45186273 45186804 -72675823 - L2 LINE L2 -460 2854 2302 2200 94 3 31 chr9 45187396 45187714 -72674913 - AluSx SINE Alu -3 309 1 231 95 0 79 chr9 45187809 45187872 -72674755 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 6169 172 24 50 chr9 45187886 45188360 -72674267 - L1MA4 LINE L1 -13 6287 5802 180 0 0 0 chr9 45188360 45188380 -72674247 + (TG)n Simple_repeat Simple_repeat 1 20 0 * 303 28 0 0 chr9 45188379 45188415 -72674212 + (GA)n Simple_repeat Simple_repeat 1 36 0 6169 172 24 50 chr9 45188380 45189975 -72672652 - L1MA4 LINE L1 -498 5802 4302 359 153 0 0 chr9 45189987 45190046 -72672581 - L1MA4 LINE L1 -2046 4100 4042 264 272 40 89 chr9 45190461 45190663 -72671964 + MIR SINE MIR 44 235 -27 1153 105 0 6 chr9 45191309 45191481 -72671146 + L1MA3 LINE L1 6135 6305 0 344 327 93 7 chr9 45191772 45191922 -72670705 + HAL1b LINE L1 748 910 -438 821 230 73 8 chr9 45191928 45192189 -72670438 - L1MC/D LINE L1 -596 5570 5296 463 282 118 32 chr9 45192761 45192981 -72669646 - MIR SINE MIR -8 254 16 602 290 70 55 chr9 45193116 45193347 -72669280 - L2 LINE L2 -1 3312 3086 1946 148 13 62 chr9 45193347 45193731 -72668896 - MLT1A1 LTR MaLR 0 365 1 602 290 70 55 chr9 45193731 45193997 -72668630 - L2 LINE L2 -227 3086 2727 356 314 111 52 chr9 45194941 45195266 -72667361 + L1ME LINE L1 5471 5639 -482 216 97 0 0 chr9 45198085 45198116 -72664511 + (ATG)n Simple_repeat Simple_repeat 1 31 0 2257 97 0 16 chr9 45198773 45199083 -72663544 - AluSg SINE Alu -4 306 2 467 311 132 6 chr9 45199139 45199306 -72663321 + MIR SINE MIR 3 190 -72 859 161 56 127 chr9 45200260 45200584 -72662043 - L1MC3 LINE L1 0 7785 7485 1724 122 0 4 chr9 45200598 45200836 -72661791 - AluSx SINE Alu -75 237 1 829 253 49 113 chr9 45200836 45201420 -72661207 - L2 LINE L2 -146 3167 2624 435 311 143 43 chr9 45201499 45201596 -72661031 - L1ME4a LINE L1 -213 5908 5822 2375 171 88 6 chr9 45201596 45202063 -72660564 - MLT1D LTR MaLR 0 505 1 435 311 143 43 chr9 45202063 45202491 -72660136 - L1ME4a LINE L1 -299 5822 5317 707 352 133 33 chr9 45202667 45203422 -72659205 + L3 LINE CR1 11 840 -737 253 313 17 78 chr9 45203605 45203784 -72658843 + MIR3 SINE MIR 30 197 -11 216 269 0 125 chr9 45207040 45207144 -72655483 + L3 LINE CR1 1482 1572 -5 544 196 34 29 chr9 45207293 45207450 -72655177 - MIR SINE MIR -5 257 99 356 291 55 18 chr9 45207946 45208056 -72654571 - L2 LINE L2 -14 3258 3145 1660 163 25 7 chr9 45208119 45208402 -72654225 - AluJb SINE Alu -12 300 13 222 269 172 78 chr9 45210500 45210913 -72651714 + L2 LINE L2 2862 3313 0 2006 116 0 0 chr9 45210988 45211256 -72651371 - AluSx SINE Alu -10 302 35 221 185 15 0 chr9 45211371 45211436 -72651191 + CT-rich Low_complexity Low_complexity 2 67 0 1539 191 84 0 chr9 45212818 45213153 -72649474 - L1MB5 LINE L1 -8 6166 5804 2301 79 33 0 chr9 45213520 45213823 -72648804 - AluSp SINE Alu 0 313 1 421 256 124 8 chr9 45213872 45213993 -72648634 + MIR SINE MIR 20 154 -108 1475 241 62 19 chr9 45214000 45214469 -72648158 + MLT1D LTR MaLR 17 505 0 1042 165 58 5 chr9 45214598 45214804 -72647823 - MER20 DNA MER1_type 0 219 3 878 185 34 39 chr9 45214833 45215038 -72647589 + MIR SINE MIR 57 260 -2 449 271 43 63 chr9 45215502 45215709 -72646918 - L2 LINE L2 -28 3285 3083 282 290 15 3 chr9 45216034 45216169 -72646458 + MIR SINE MIR 83 255 -7 407 156 133 0 chr9 45216708 45216798 -72645829 + L1MB5 LINE L1 6055 6156 -18 21 82 0 0 chr9 45216914 45216963 -72645664 + AT_rich Low_complexity Low_complexity 1 49 0 316 235 0 29 chr9 45217073 45217141 -72645486 + L2 LINE L2 3240 3305 -8 200 231 138 0 chr9 45217220 45217285 -72645342 - MIR3 SINE MIR -39 169 96 214 162 40 50 chr9 45217394 45217493 -72645134 + CT-rich Low_complexity Low_complexity 2 99 0 180 386 61 23 chr9 45217513 45217645 -72644982 + MIR SINE MIR 17 153 -55 382 250 8 0 chr9 45217895 45218019 -72644608 - L1M4 LINE L1 -1098 5048 4924 2267 101 0 32 chr9 45218245 45218424 -72644203 - AluSx SINE Alu -6 306 140 2497 80 0 0 chr9 45218424 45218735 -72643892 - AluY SINE Alu 0 311 1 2267 101 0 32 chr9 45218735 45218871 -72643756 - AluSx SINE Alu -172 140 1 637 299 39 44 chr9 45218873 45219083 -72643544 - L1M4 LINE L1 -1462 4684 4475 2535 57 0 0 chr9 45219083 45219380 -72643247 - AluY SINE Alu -14 297 1 637 299 39 44 chr9 45219380 45219577 -72643050 - L1M4 LINE L1 -1671 4475 4279 1574 184 37 5 chr9 45221672 45222052 -72640575 - Charlie5 DNA MER1_type 0 2624 2233 280 252 42 59 chr9 45222065 45222184 -72640443 - MER3 DNA MER1_type -53 156 40 27 0 0 0 chr9 45222580 45222607 -72640020 + AT_rich Low_complexity Low_complexity 1 27 0 594 99 20 0 chr9 45222608 45222709 -72639918 + MER3 DNA MER1_type 2234 2336 0 314 282 51 45 chr9 45222717 45222873 -72639754 + L1ME LINE L1 332 488 -5908 257 250 0 0 chr9 45222891 45222943 -72639684 - L1MEc LINE L1 -6310 86 35 4288 226 76 24 chr9 45222943 45224569 -72638058 + L1ME LINE L1 790 2462 -3944 786 199 85 4 chr9 45224569 45224840 -72637787 + MER3 DNA MER1_type 2328 2620 0 252 299 88 36 chr9 45225571 45225708 -72636919 + L2 LINE L2 3168 3311 -2 244 330 102 57 chr9 45225938 45226114 -72636513 + MIR3 SINE MIR 2 185 -23 2043 190 52 44 chr9 45226343 45226844 -72635783 - MLT1D LTR MaLR 0 505 1 204 293 40 53 chr9 45227775 45227850 -72634777 + MER91C DNA MER1_type 34 107 -33 310 378 37 54 chr9 45227908 45228204 -72634423 - L2 LINE L2 -120 3152 2862 515 303 19 12 chr9 45228226 45228388 -72634239 + MIR SINE MIR 94 256 -6 240 35 0 0 chr9 45228983 45229012 -72633615 + (T)n Simple_repeat Simple_repeat 1 29 0 34 42 0 0 chr9 45229814 45229862 -72632765 + AT_rich Low_complexity Low_complexity 1 48 0 574 301 107 9 chr9 45230583 45231008 -72631619 + L1ME4a LINE L1 5366 5826 -295 242 250 12 24 chr9 45231086 45231170 -72631457 + L1ME4a LINE L1 5970 6052 -69 422 275 88 22 chr9 45231223 45231678 -72630949 + L1ME4a LINE L1 5599 6119 -2 315 240 142 33 chr9 45232164 45232225 -72630402 + L1M4 LINE L1 3714 3767 -2379 2522 84 0 0 chr9 45232225 45232535 -72630092 + AluSx SINE Alu 3 312 0 315 240 142 33 chr9 45232535 45232697 -72629930 + L1M4 LINE L1 3767 3942 -2204 433 229 9 0 chr9 45232705 45232810 -72629817 + L1ME1 LINE L1 6057 6162 -4 376 338 108 17 chr9 45232901 45233132 -72629495 + L1M4 LINE L1 4041 4292 -1854 441 249 29 69 chr9 45233547 45233816 -72628811 + Charlie8 DNA MER1_type 79 1428 -989 29 28 0 0 chr9 45234007 45234043 -72628584 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr9 45234517 45234540 -72628087 + AT_rich Low_complexity Low_complexity 1 23 0 208 279 0 33 chr9 45234750 45234811 -72627816 + L2 LINE L2 3251 3309 -4 1669 154 43 7 chr9 45235433 45235738 -72626889 + MER1B DNA MER1_type 24 339 0 360 335 94 16 chr9 45235742 45235987 -72626640 - L2 LINE L2 -930 2384 2121 348 306 65 0 chr9 45236032 45236140 -72626487 + MIR3 SINE MIR 89 203 -5 514 243 216 28 chr9 45236376 45236557 -72626070 + MIR SINE MIR 2 216 -46 324 291 189 0 chr9 45237812 45237960 -72624667 - MIR SINE MIR -15 247 72 348 248 95 10 chr9 45239438 45239590 -72623037 - L1ME3 LINE L1 -8 6154 5973 318 161 48 0 chr9 45239590 45239652 -72622975 - Tigger7 DNA MER2_type -1 2586 2522 4817 137 62 6 chr9 45239763 45240586 -72622041 - Tigger7 DNA MER2_type -1617 870 2 734 246 213 17 chr9 45240586 45240943 -72621684 - L1ME3 LINE L1 -195 5975 5549 769 128 23 23 chr9 45241328 45241461 -72621166 - FLAM_C SINE Alu 0 133 1 37 69 0 0 chr9 45241467 45241539 -72621088 + AT_rich Low_complexity Low_complexity 1 72 0 583 273 99 51 chr9 45242108 45242401 -72620226 - L2 LINE L2 -8 3305 2999 389 241 218 17 chr9 45243029 45243203 -72619424 + MIR SINE MIR 51 259 -3 1099 301 46 3 chr9 45243260 45243629 -72618998 + L2 LINE L2 2395 2779 -535 290 291 23 12 chr9 45243766 45243852 -72618775 + L2 LINE L2 2947 3033 -280 199 211 28 99 chr9 45243970 45244041 -72618586 + L2 LINE L2 3248 3313 0 183 80 0 0 chr9 45244952 45244977 -72617650 + (CGG)n Simple_repeat Simple_repeat 1 25 0 308 358 138 50 chr9 45247598 45248221 -72614406 + L2 LINE L2 2248 2925 -389 688 329 98 33 chr9 45248487 45248937 -72613690 + L2 LINE L2 2461 2939 -375 722 227 41 23 chr9 45250425 45250597 -72612030 - MIR SINE MIR -21 241 67 195 281 31 0 chr9 45250637 45250701 -72611926 + MIR SINE MIR 170 235 -27 * 322 294 115 60 chr9 45250697 45250966 -72611661 - L3 LINE CR1 -85 1492 1209 571 221 27 47 chr9 45251129 45251278 -72611349 - MIR SINE MIR 0 262 117 34 24 0 0 chr9 45251338 45251379 -72611248 + AT_rich Low_complexity Low_complexity 1 41 0 2182 120 0 13 chr9 45252497 45252813 -72609814 - AluSx SINE Alu 0 312 1 261 0 0 0 chr9 45253355 45253384 -72609243 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 210 128 0 0 chr9 45255477 45255516 -72607111 + (CA)n Simple_repeat Simple_repeat 1 39 0 342 333 64 89 chr9 45256722 45257172 -72605455 + L2 LINE L2 2834 3272 0 201 194 0 0 chr9 45257290 45257326 -72605301 - L2 LINE L2 -4 3309 3274 2347 61 3 10 chr9 45257335 45257659 -72604968 - AluY SINE Alu 0 311 1 382 224 27 109 chr9 45257753 45257936 -72604691 - L2 LINE L2 0 3313 3146 213 260 20 0 chr9 45257954 45258004 -72604623 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 3423 238 73 50 chr9 45258005 45259097 -72603530 - L2 LINE L2 -404 2910 1793 311 0 0 25 chr9 45259271 45259311 -72603316 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr9 45259571 45259596 -72603031 + AT_rich Low_complexity Low_complexity 1 25 0 394 313 66 1 chr9 45260102 45260238 -72602389 + MIR SINE MIR 45 188 -57 562 289 155 24 chr9 45260852 45261226 -72601401 - L1ME4a LINE L1 -6 6115 5693 317 214 0 67 chr9 45261942 45262031 -72600596 - L2 LINE L2 0 3313 3231 315 0 0 0 chr9 45262693 45262728 -72599899 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 875 290 140 58 chr9 45263153 45264063 -72598564 - L2 LINE L2 -5 3308 2232 3378 197 26 9 chr9 45264223 45264990 -72597637 + L1 LINE L1 4587 5366 -780 274 206 32 0 chr9 45265121 45265184 -72597443 + Zaphod DNA AcHobo 3966 4030 -1 194 132 226 0 chr9 45265231 45265284 -72597343 + L2 LINE L2 3208 3272 0 339 263 29 126 chr9 45265448 45265623 -72597004 + MER91A DNA MER1_type 3 160 -36 210 209 47 0 chr9 45265655 45265698 -72596929 + MER91A DNA MER1_type 133 177 -13 299 269 55 21 chr9 45266817 45266962 -72595665 + L1ME4a LINE L1 5961 6110 -11 281 89 22 0 chr9 45267300 45267345 -72595282 + (TGGA)n Simple_repeat Simple_repeat 3 48 0 574 331 129 41 chr9 45267350 45268388 -72594239 - L2 LINE L2 -93 3179 2038 213 208 62 0 chr9 45268753 45268801 -72593826 - L2 LINE L2 0 3272 3222 385 220 110 34 chr9 45269349 45269467 -72593160 + MIR SINE MIR 2 128 -134 1057 189 0 0 chr9 45269469 45269638 -72592989 - FRAM SINE Alu -9 167 1 573 228 29 47 chr9 45269640 45269811 -72592816 + MIR SINE MIR 94 261 -1 566 275 65 31 chr9 45270321 45270550 -72592077 - MIR SINE MIR -20 242 6 24 67 0 0 chr9 45271823 45271868 -72590759 + AT_rich Low_complexity Low_complexity 1 45 0 2115 136 0 13 chr9 45272801 45273111 -72589516 + AluSx SINE Alu 6 311 -1 222 91 0 0 chr9 45274159 45274192 -72588435 + (TTG)n Simple_repeat Simple_repeat 1 33 0 315 325 95 56 chr9 45274567 45274872 -72587755 + L2 LINE L2 2955 3271 -1 198 301 77 77 chr9 45275836 45275979 -72586648 + MIR3 SINE MIR 17 159 -49 959 245 68 85 chr9 45276177 45276695 -72585932 + LTR33A LTR ERVL 7 515 -8 308 266 16 39 chr9 45276763 45276891 -72585736 - MER5B DNA MER1_type -35 143 19 372 341 77 33 chr9 45277760 45278033 -72584594 + HAL1 LINE L1 1364 1648 -859 1482 232 50 25 chr9 45278418 45278862 -72583765 + MLT1C LTR MaLR 11 465 -2 23 42 0 21 chr9 45279395 45279415 -72583212 + AT_rich Low_complexity Low_complexity 1 20 -27 1997 110 7 17 chr9 45279415 45279707 -72582920 + AluJb SINE Alu 1 289 -23 23 42 0 21 chr9 45279707 45279734 -72582893 + AT_rich Low_complexity Low_complexity 20 47 0 475 305 58 56 chr9 45279784 45280214 -72582413 + L1MC/D LINE L1 2662 3092 -3054 233 253 37 43 chr9 45280335 45280497 -72582130 + L1MC/D LINE L1 3283 3443 -2703 26 0 0 0 chr9 45280700 45280726 -72581901 + AT_rich Low_complexity Low_complexity 1 26 0 477 335 93 60 chr9 45280756 45280996 -72581631 + L1MC/D LINE L1 4383 4614 -1532 2316 112 0 0 chr9 45280996 45281309 -72581318 - AluSq SINE Alu 0 313 1 477 335 93 60 chr9 45281309 45281989 -72580638 + L1MC/D LINE L1 4614 5339 -807 455 292 88 45 chr9 45282009 45282430 -72580197 + L1MC/D LINE L1 5373 5811 -1997 911 150 0 0 chr9 45282603 45282736 -72579891 - FLAM_C SINE Alu 0 133 1 256 250 45 11 chr9 45283746 45283834 -72578793 - L1ME4a LINE L1 -28 6093 6003 804 116 0 84 chr9 45283940 45284095 -72578532 - L1MB5 LINE L1 -9 6165 6024 498 172 97 0 chr9 45284095 45284188 -72578439 + MER2 DNA MER2_type 2 103 -242 1685 191 3 0 chr9 45284188 45284481 -72578146 - AluJo SINE Alu -14 298 5 1743 127 91 11 chr9 45285908 45286183 -72576444 + AluJb SINE Alu 1 297 -15 631 275 79 46 chr9 45286319 45286884 -72575743 + L1ME4a LINE L1 5313 5892 -229 226 250 132 46 chr9 45286914 45287066 -72575561 + L1ME4a LINE L1 5956 6120 -1 973 178 0 37 chr9 45287088 45287251 -72575376 + FRAM SINE Alu 2 158 -8 1332 209 67 83 chr9 45287700 45288194 -72574433 - MLT1D LTR MaLR -4 501 16 829 391 77 8 chr9 45289751 45290405 -72572222 + L3 LINE CR1 31 729 -848 1140 251 45 15 chr9 45291151 45291482 -72571145 - MER102b DNA MER1_type 0 341 1 2246 105 3 3 chr9 45291658 45291964 -72570663 - AluSx SINE Alu -6 306 1 1047 187 44 15 chr9 45292219 45292422 -72570205 + MER3 DNA MER1_type 1 209 0 2159 115 0 0 chr9 45293732 45294020 -72568607 + AluSx SINE Alu 1 288 -24 934 210 78 24 chr9 45294329 45294534 -72568093 + MER20 DNA MER1_type 4 219 0 276 309 46 66 chr9 45294567 45294719 -72567908 + MIR SINE MIR 50 198 -64 330 179 0 0 chr9 45294998 45295054 -72567573 + Alu SINE Alu 238 293 -9 795 249 52 30 chr9 45296223 45296456 -72566171 - MIR SINE MIR -19 243 6 2179 85 7 3 chr9 45296596 45296878 -72565749 - AluSq SINE Alu -19 294 12 759 279 114 55 chr9 45297926 45298372 -72564255 - L2 LINE L2 0 3313 2836 576 181 281 0 chr9 45298372 45298543 -72564084 + MER20 DNA MER1_type 1 219 0 759 279 114 55 chr9 45298543 45298570 -72564057 - L2 LINE L2 -477 2836 2812 394 338 138 3 chr9 45298548 45298859 -72563768 - L2 LINE L2 -710 2604 2252 * 185 344 8 57 chr9 45299351 45299473 -72563154 + L2 LINE L2 3108 3223 -49 181 289 0 0 chr9 45300435 45300473 -72562154 + L2 LINE L2 3185 3222 -91 21 36 0 0 chr9 45301129 45301157 -72561470 + AT_rich Low_complexity Low_complexity 1 28 0 206 256 0 0 chr9 45301519 45301562 -72561065 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 879 329 81 50 chr9 45302205 45302578 -72560049 + L2 LINE L2 1554 1914 -1400 2389 109 0 0 chr9 45302578 45302890 -72559737 - AluSx SINE Alu 0 312 1 879 329 81 50 chr9 45302890 45303676 -72558951 + L2 LINE L2 1914 2749 -565 198 0 0 0 chr9 45303677 45303699 -72558928 + (TAA)n Simple_repeat Simple_repeat 1 22 0 271 215 0 62 chr9 45303752 45303817 -72558810 + L2 LINE L2 3253 3313 0 444 327 66 88 chr9 45304247 45304715 -72557912 - L2 LINE L2 0 3272 2815 2225 157 39 33 chr9 45305199 45305684 -72556943 - Charlie1b DNA MER1_type -1 522 35 2424 86 7 0 chr9 45305735 45306039 -72556588 + AluSp SINE Alu 1 306 -7 340 259 0 65 chr9 45306324 45306432 -72556195 - L2 LINE L2 -527 2787 2687 205 300 66 16 chr9 45306800 45306925 -72555702 + MIR SINE MIR 62 190 -70 2093 122 53 28 chr9 45307632 45307992 -72554635 - L1MA8 LINE L1 -3 6288 5920 482 253 68 12 chr9 45308343 45308505 -72554122 + MIR SINE MIR 23 193 -69 670 257 106 28 chr9 45308543 45308761 -72553866 + MIR SINE MIR 28 262 0 431 266 44 0 chr9 45309029 45309142 -72553485 + MER5A DNA MER1_type 67 184 -5 183 114 0 0 chr9 45309603 45309638 -72552989 + (T)n Simple_repeat Simple_repeat 1 35 0 263 341 59 44 chr9 45310054 45310234 -72552393 - L2 LINE L2 -1074 2240 2052 1978 135 7 0 chr9 45310234 45310560 -72552067 + AluSx SINE Alu 1 328 0 263 341 59 44 chr9 45310560 45310651 -72551976 - L2 LINE L2 -1262 2052 1964 802 168 143 6 chr9 45310783 45310944 -72551683 - MER20 DNA MER1_type 0 219 37 288 77 0 0 chr9 45311125 45311164 -72551463 + (CA)n Simple_repeat Simple_repeat 1 39 0 540 268 68 47 chr9 45311840 45312030 -72550597 + MER117 DNA MER1_type 3 196 -1 613 111 139 0 chr9 45312241 45312349 -72550278 + L1MB3 LINE L1 6057 6179 -4 842 179 36 0 chr9 45313375 45313543 -72549084 + MER5A DNA MER1_type 16 189 0 997 139 0 19 chr9 45313840 45313998 -72548629 + AluSg/x SINE Alu 150 304 -8 24 77 0 0 chr9 45314147 45314199 -72548428 + AT_rich Low_complexity Low_complexity 1 52 0 473 183 130 17 chr9 45315279 45315394 -72547233 + L1MA10 LINE L1 6193 6320 -14 362 307 65 52 chr9 45315997 45316228 -72546399 - MIR SINE MIR -9 253 20 2340 141 6 18 chr9 45316809 45317150 -72545477 + MER1B DNA MER1_type 1 337 0 1113 191 38 14 chr9 45317163 45317373 -72545254 + MER58A DNA MER1_type 4 218 -6 842 154 0 0 chr9 45317373 45317490 -72545137 + FLAM_C SINE Alu 1 117 -16 33 0 0 0 chr9 45317490 45317523 -72545104 + AT_rich Low_complexity Low_complexity 1 33 0 195 42 0 0 chr9 45318100 45318124 -72544503 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr9 45320196 45320217 -72542410 + AT_rich Low_complexity Low_complexity 1 21 0 1143 281 128 32 chr9 45320349 45320922 -72541705 - L1MC4a LINE L1 -1869 5939 5300 1622 126 0 0 chr9 45320922 45321144 -72541483 - AluJb SINE Alu -6 306 85 1143 281 128 32 chr9 45321144 45321196 -72541431 - L1MC4a LINE L1 -2508 5300 5254 184 308 26 26 chr9 45321436 45321514 -72541113 - MIR SINE MIR -176 86 9 211 273 0 0 chr9 45322038 45322093 -72540534 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr9 45322578 45322599 -72540028 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr9 45322937 45322966 -72539661 + (A)n Simple_repeat Simple_repeat 1 29 0 355 153 0 17 chr9 45323150 45323209 -72539418 - L2 LINE L2 0 3272 3215 369 0 0 0 chr9 45325655 45325696 -72536931 + (TG)n Simple_repeat Simple_repeat 2 42 0 592 206 40 23 chr9 45326721 45326896 -72535731 + L1MC5 LINE L1 7609 7786 -175 2349 109 0 0 chr9 45326927 45327239 -72535388 + AluSx SINE Alu 1 312 0 1006 166 116 21 chr9 45327239 45327480 -72535147 + L1MA4 LINE L1 6037 6300 0 899 118 7 7 chr9 45327481 45327625 -72535002 + L1MA8 LINE L1 6144 6287 -4 320 215 0 0 chr9 45327635 45327700 -72534927 + L1MB8 LINE L1 6111 6175 -3 665 261 27 16 chr9 45327877 45328065 -72534562 - AluJo SINE Alu -118 194 5 2004 177 160 40 chr9 45328374 45328825 -72533802 - MLT1D LTR MaLR 0 505 1 540 261 103 55 chr9 45328919 45329229 -72533398 - L2 LINE L2 -1 3312 2988 185 281 88 0 chr9 45329271 45329328 -72533299 - L2 LINE L2 -61 3252 3191 946 140 122 12 chr9 45329608 45329772 -72532855 + MLT1D LTR MaLR 324 505 0 1069 321 131 7 chr9 45329909 45330510 -72532117 - L2 LINE L2 -668 2646 1971 549 259 114 12 chr9 45330674 45330929 -72531698 + L1ME4a LINE L1 5801 6081 -40 1871 187 3 0 chr9 45331242 45331542 -72531085 + AluJb SINE Alu 3 303 -9 243 0 0 0 chr9 45331615 45331642 -72530985 + (TAA)n Simple_repeat Simple_repeat 1 27 0 340 346 74 30 chr9 45332731 45332962 -72529665 - MLT1J2 LTR MaLR -15 435 195 854 260 95 82 chr9 45332994 45333424 -72529203 + LTR33 LTR ERVL 2 441 -80 1942 55 0 13 chr9 45333424 45333659 -72528968 - L1PA8 LINE L1 0 6172 5941 854 260 95 82 chr9 45333659 45333731 -72528896 + LTR33 LTR ERVL 441 511 -10 781 213 67 88 chr9 45335112 45335441 -72527186 - MLT1D LTR MaLR -182 323 2 256 294 139 33 chr9 45336382 45336562 -72526065 - MIR3 SINE MIR -3 205 7 1025 208 37 37 chr9 45337132 45337348 -72525279 + MER20 DNA MER1_type 4 219 0 357 341 0 8 chr9 45339593 45339722 -72522905 - MIR3 SINE MIR -14 194 67 201 245 330 0 chr9 45340518 45340624 -72522003 + MIR SINE MIR 106 246 -16 459 0 0 0 chr9 45341939 45341990 -72520637 + (TG)n Simple_repeat Simple_repeat 2 52 0 483 304 18 2 chr9 45342507 45342650 -72519977 + MIR SINE MIR 9 147 -61 623 305 53 32 chr9 45343395 45343892 -72518735 + L1MC4a LINE L1 5373 5824 -297 1810 141 53 3 chr9 45343906 45344190 -72518437 - AluJb SINE Alu -14 298 1 326 290 124 26 chr9 45344524 45344717 -72517910 - MLT1J LTR MaLR -37 474 263 1036 153 62 14 chr9 45344867 45345076 -72517551 - MER20 DNA MER1_type 0 219 1 226 379 0 0 chr9 45346584 45346671 -72515956 - MIR SINE MIR -108 154 68 2837 181 31 0 chr9 45347207 45347295 -72515332 + L1MA6 LINE L1 4739 4823 -1323 234 0 0 0 chr9 45347295 45347321 -72515306 + (CA)n Simple_repeat Simple_repeat 2 27 0 2837 181 31 0 chr9 45347321 45347835 -72514792 + L1MA6 LINE L1 4823 5360 -786 1770 182 3 7 chr9 45347851 45348153 -72514474 + AluJb SINE Alu 1 301 -11 886 205 77 40 chr9 45348276 45348562 -72514065 + L1MA6 LINE L1 5985 6284 -16 1909 95 4 0 chr9 45348562 45348824 -72513803 + L1PB3 LINE L1 5892 6154 0 886 2